Query 009766
Match_columns 526
No_of_seqs 201 out of 1163
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 17:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0529 Protein geranylgeranyl 100.0 4.7E-72 1E-76 579.7 28.5 410 1-509 1-420 (421)
2 KOG0530 Protein farnesyltransf 100.0 1.3E-41 2.8E-46 336.3 14.2 207 8-233 26-233 (318)
3 PLN02789 farnesyltranstransfer 100.0 2.1E-38 4.5E-43 326.9 21.1 207 10-233 22-229 (320)
4 COG5536 BET4 Protein prenyltra 100.0 1.1E-36 2.5E-41 302.9 16.4 226 1-233 3-239 (328)
5 PLN02789 farnesyltranstransfer 99.9 2.2E-25 4.9E-30 230.2 20.8 172 42-232 89-266 (320)
6 KOG0529 Protein geranylgeranyl 99.9 9.8E-24 2.1E-28 220.1 11.9 138 40-187 90-241 (421)
7 KOG0530 Protein farnesyltransf 99.9 9E-22 2E-26 195.7 12.0 137 88-236 60-196 (318)
8 COG5536 BET4 Protein prenyltra 99.7 1.2E-17 2.6E-22 167.4 12.5 139 39-187 88-239 (328)
9 TIGR00990 3a0801s09 mitochondr 99.4 1.9E-11 4E-16 135.9 20.3 173 37-236 307-482 (615)
10 TIGR00990 3a0801s09 mitochondr 99.4 3.1E-11 6.8E-16 134.1 21.7 162 36-224 343-504 (615)
11 PRK15359 type III secretion sy 99.2 1.6E-10 3.4E-15 106.3 14.6 126 46-188 14-139 (144)
12 PRK12370 invasion protein regu 99.2 1.2E-09 2.6E-14 120.6 22.8 178 42-236 278-456 (553)
13 PRK15359 type III secretion sy 99.2 2.3E-10 5E-15 105.1 13.5 125 92-233 14-138 (144)
14 TIGR02521 type_IV_pilW type IV 99.1 1.6E-08 3.5E-13 93.6 21.3 175 32-233 39-215 (234)
15 PRK11189 lipoprotein NlpI; Pro 99.1 3.1E-09 6.8E-14 108.5 17.7 119 35-171 75-195 (296)
16 PRK12370 invasion protein regu 99.1 3.8E-09 8.3E-14 116.7 19.6 163 42-230 321-484 (553)
17 PRK11189 lipoprotein NlpI; Pro 99.1 7.6E-09 1.6E-13 105.6 19.6 120 42-175 43-166 (296)
18 TIGR02917 PEP_TPR_lipo putativ 99.0 2.8E-08 6.1E-13 110.0 22.1 47 27-74 25-71 (899)
19 PRK09782 bacteriophage N4 rece 99.0 3E-08 6.6E-13 116.5 21.9 162 35-224 553-714 (987)
20 KOG4626 O-linked N-acetylgluco 99.0 6.1E-09 1.3E-13 114.2 14.4 182 37-233 129-332 (966)
21 TIGR02917 PEP_TPR_lipo putativ 99.0 9.1E-08 2E-12 106.0 23.2 140 35-189 136-275 (899)
22 PRK15174 Vi polysaccharide exp 99.0 3.6E-08 7.7E-13 111.4 20.0 174 34-218 222-405 (656)
23 PRK15174 Vi polysaccharide exp 98.9 8.6E-08 1.9E-12 108.3 22.6 186 33-233 119-364 (656)
24 KOG4626 O-linked N-acetylgluco 98.9 2.6E-08 5.7E-13 109.3 16.7 171 37-233 299-502 (966)
25 KOG1126 DNA-binding cell divis 98.9 5E-09 1.1E-13 115.5 10.8 148 85-246 469-616 (638)
26 KOG1126 DNA-binding cell divis 98.9 2.3E-08 5.1E-13 110.3 13.5 159 36-221 467-625 (638)
27 PRK11447 cellulose synthase su 98.8 2E-07 4.3E-12 111.4 21.7 188 34-236 279-510 (1157)
28 PRK09782 bacteriophage N4 rece 98.8 2.8E-07 6.1E-12 108.5 20.9 158 36-221 588-745 (987)
29 TIGR02552 LcrH_SycD type III s 98.7 3.4E-07 7.4E-12 81.0 14.5 125 47-185 5-129 (135)
30 TIGR03302 OM_YfiO outer membra 98.7 1.5E-06 3.2E-11 84.4 20.0 168 25-218 34-234 (235)
31 PRK10370 formate-dependent nit 98.7 4.2E-07 9.1E-12 88.2 16.1 125 85-222 53-179 (198)
32 PRK11447 cellulose synthase su 98.7 1.4E-06 3.1E-11 104.2 23.4 69 34-115 471-539 (1157)
33 TIGR02552 LcrH_SycD type III s 98.7 4.2E-07 9.2E-12 80.4 13.8 127 92-232 4-130 (135)
34 PRK11788 tetratricopeptide rep 98.7 2.6E-06 5.7E-11 88.0 21.4 175 34-235 45-228 (389)
35 TIGR02521 type_IV_pilW type IV 98.7 5.3E-06 1.1E-10 76.8 21.3 157 34-217 75-233 (234)
36 PRK11788 tetratricopeptide rep 98.7 3.5E-06 7.5E-11 87.1 21.7 126 34-174 117-247 (389)
37 PRK15179 Vi polysaccharide bio 98.7 1.2E-06 2.6E-11 99.8 19.7 134 33-181 95-228 (694)
38 PRK10370 formate-dependent nit 98.7 7.5E-07 1.6E-11 86.4 15.4 125 38-176 53-179 (198)
39 PRK15179 Vi polysaccharide bio 98.6 1.5E-06 3.2E-11 99.1 19.8 153 42-220 69-221 (694)
40 KOG1125 TPR repeat-containing 98.6 8.4E-07 1.8E-11 97.1 16.8 178 33-236 294-557 (579)
41 PLN03088 SGT1, suppressor of 98.6 1.3E-06 2.7E-11 92.1 15.1 104 31-148 9-112 (356)
42 KOG1155 Anaphase-promoting com 98.5 2.8E-06 6E-11 91.3 17.4 135 42-190 347-481 (559)
43 KOG0547 Translocase of outer m 98.5 2.3E-06 4.9E-11 92.4 15.9 169 37-232 339-513 (606)
44 PF01239 PPTA: Protein prenylt 98.5 1.2E-07 2.7E-12 65.5 4.2 27 90-116 2-28 (31)
45 KOG0553 TPR repeat-containing 98.5 1.4E-06 3.1E-11 89.3 13.2 122 17-155 77-198 (304)
46 PF01239 PPTA: Protein prenylt 98.5 1.5E-07 3.2E-12 65.1 4.0 31 124-154 1-31 (31)
47 PF13429 TPR_15: Tetratricopep 98.5 2E-06 4.4E-11 86.1 13.8 187 37-239 57-266 (280)
48 PF13429 TPR_15: Tetratricopep 98.5 2.8E-06 6.1E-11 85.1 14.5 143 33-190 119-263 (280)
49 KOG1155 Anaphase-promoting com 98.5 2.1E-05 4.6E-10 84.7 21.4 139 83-235 342-480 (559)
50 KOG0547 Translocase of outer m 98.4 6.1E-06 1.3E-10 89.2 16.6 176 36-236 371-552 (606)
51 KOG0553 TPR repeat-containing 98.4 1.1E-06 2.4E-11 90.1 10.5 104 85-190 95-198 (304)
52 PRK10049 pgaA outer membrane p 98.4 1.2E-05 2.7E-10 92.4 20.3 181 33-230 246-470 (765)
53 PRK10049 pgaA outer membrane p 98.4 1.1E-05 2.3E-10 92.9 19.5 165 26-219 17-181 (765)
54 KOG0548 Molecular co-chaperone 98.3 6.2E-05 1.3E-09 82.2 21.5 199 16-233 219-472 (539)
55 TIGR03302 OM_YfiO outer membra 98.3 3.8E-05 8.2E-10 74.5 18.0 168 55-236 29-218 (235)
56 KOG2076 RNA polymerase III tra 98.3 2E-05 4.3E-10 90.0 17.9 137 21-172 136-272 (895)
57 PLN03088 SGT1, suppressor of 98.3 7.8E-06 1.7E-10 86.1 13.2 102 85-188 16-117 (356)
58 PRK14574 hmsH outer membrane p 98.3 4.1E-05 9E-10 88.9 19.4 177 28-234 38-216 (822)
59 COG3063 PilF Tfp pilus assembl 98.2 8E-05 1.7E-09 74.4 18.1 140 31-185 42-183 (250)
60 PF07711 RabGGT_insert: Rab ge 98.2 8.7E-07 1.9E-11 77.0 3.4 59 259-332 4-63 (102)
61 cd05804 StaR_like StaR_like; a 98.1 0.00014 3E-09 74.5 17.0 162 33-218 52-217 (355)
62 KOG0624 dsRNA-activated protei 98.0 0.00027 5.9E-09 74.2 17.9 193 22-231 39-267 (504)
63 COG3063 PilF Tfp pilus assembl 98.0 7E-05 1.5E-09 74.8 13.0 126 85-224 49-176 (250)
64 PF13414 TPR_11: TPR repeat; P 97.9 6.2E-05 1.3E-09 59.5 8.9 68 58-137 2-69 (69)
65 KOG0548 Molecular co-chaperone 97.9 0.00023 5E-09 77.9 15.2 92 85-178 372-463 (539)
66 KOG3060 Uncharacterized conser 97.9 0.0023 5.1E-08 65.0 20.8 154 26-190 12-169 (289)
67 KOG3060 Uncharacterized conser 97.9 0.0015 3.2E-08 66.4 19.2 176 26-225 53-229 (289)
68 PF13414 TPR_11: TPR repeat; P 97.9 6.7E-05 1.5E-09 59.3 7.8 67 140-218 3-69 (69)
69 cd05804 StaR_like StaR_like; a 97.8 0.00096 2.1E-08 68.3 17.9 157 38-221 20-182 (355)
70 cd00189 TPR Tetratricopeptide 97.8 0.00038 8.2E-09 53.7 11.3 88 36-137 12-99 (100)
71 cd00189 TPR Tetratricopeptide 97.8 0.00047 1E-08 53.2 11.7 99 107-219 2-100 (100)
72 KOG2076 RNA polymerase III tra 97.8 0.00037 8.1E-09 79.9 14.7 121 84-218 152-272 (895)
73 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00071 1.5E-08 57.5 13.2 100 28-141 6-111 (119)
74 PRK02603 photosystem I assembl 97.7 0.00028 6E-09 66.2 11.0 124 95-220 23-153 (172)
75 PRK02603 photosystem I assembl 97.7 0.00058 1.3E-08 64.0 12.9 117 46-175 20-154 (172)
76 PRK15363 pathogenicity island 97.7 0.00081 1.8E-08 63.7 13.4 101 22-136 33-133 (157)
77 KOG1156 N-terminal acetyltrans 97.7 0.002 4.4E-08 72.1 17.7 143 26-183 9-151 (700)
78 KOG4234 TPR repeat-containing 97.6 0.00078 1.7E-08 66.5 12.6 119 12-177 86-204 (271)
79 PRK11906 transcriptional regul 97.6 0.0024 5.2E-08 69.5 17.2 158 51-230 240-415 (458)
80 PRK11906 transcriptional regul 97.6 0.0024 5.2E-08 69.5 16.7 135 42-181 275-412 (458)
81 KOG0624 dsRNA-activated protei 97.6 0.0091 2E-07 63.1 20.0 198 13-224 144-378 (504)
82 KOG4162 Predicted calmodulin-b 97.6 0.0014 3E-08 74.5 15.0 122 87-221 666-788 (799)
83 KOG2002 TPR-containing nuclear 97.5 0.0044 9.5E-08 72.0 18.9 184 36-234 542-763 (1018)
84 PRK10153 DNA-binding transcrip 97.5 0.006 1.3E-07 67.8 19.0 155 50-226 328-491 (517)
85 CHL00033 ycf3 photosystem I as 97.5 0.0024 5.2E-08 59.4 13.3 135 85-221 13-154 (168)
86 KOG1125 TPR repeat-containing 97.5 0.0013 2.9E-08 72.6 13.1 104 85-190 444-557 (579)
87 PF13432 TPR_16: Tetratricopep 97.4 0.00048 1E-08 54.0 6.7 61 32-105 5-65 (65)
88 KOG0550 Molecular chaperone (D 97.4 0.0017 3.7E-08 69.6 12.7 170 37-233 182-369 (486)
89 PRK14574 hmsH outer membrane p 97.4 0.0041 9E-08 72.6 16.4 138 35-190 79-218 (822)
90 PRK10153 DNA-binding transcrip 97.4 0.0045 9.8E-08 68.8 16.0 128 42-176 359-488 (517)
91 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0057 1.2E-07 51.9 13.3 89 86-176 17-111 (119)
92 CHL00033 ycf3 photosystem I as 97.4 0.0033 7.2E-08 58.5 12.6 120 43-175 17-154 (168)
93 KOG0550 Molecular chaperone (D 97.3 0.0012 2.7E-08 70.7 10.6 184 20-221 48-321 (486)
94 TIGR00540 hemY_coli hemY prote 97.3 0.022 4.7E-07 60.9 20.3 188 32-235 161-384 (409)
95 PF13432 TPR_16: Tetratricopep 97.3 0.0014 3E-08 51.3 7.6 53 86-139 12-64 (65)
96 KOG4162 Predicted calmodulin-b 97.2 0.0097 2.1E-07 67.8 16.8 125 38-175 663-788 (799)
97 COG4783 Putative Zn-dependent 97.2 0.03 6.6E-07 61.2 19.3 114 29-156 311-424 (484)
98 PRK14720 transcript cleavage f 97.2 0.0098 2.1E-07 69.8 16.7 200 20-224 26-260 (906)
99 PRK15363 pathogenicity island 97.2 0.0055 1.2E-07 58.2 11.9 97 107-217 37-133 (157)
100 PF12569 NARP1: NMDA receptor- 97.2 0.021 4.5E-07 63.7 18.3 162 36-221 50-262 (517)
101 KOG1173 Anaphase-promoting com 97.1 0.015 3.1E-07 64.6 16.5 174 36-236 290-504 (611)
102 KOG1173 Anaphase-promoting com 97.1 0.0079 1.7E-07 66.6 14.4 171 38-223 326-525 (611)
103 KOG0495 HAT repeat protein [RN 97.1 0.024 5.2E-07 64.0 18.1 201 37-252 664-887 (913)
104 COG4783 Putative Zn-dependent 97.1 0.0076 1.6E-07 65.7 13.9 122 102-237 303-424 (484)
105 PF12895 Apc3: Anaphase-promot 97.0 0.0026 5.6E-08 52.6 7.4 80 37-131 2-83 (84)
106 KOG2002 TPR-containing nuclear 97.0 0.0077 1.7E-07 70.1 13.4 135 42-190 629-765 (1018)
107 PF13371 TPR_9: Tetratricopept 97.0 0.0034 7.3E-08 49.9 7.7 62 35-109 6-67 (73)
108 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0028 6.1E-08 68.9 9.3 70 54-136 70-142 (453)
109 PRK10747 putative protoheme IX 97.0 0.064 1.4E-06 57.3 19.2 171 33-234 162-374 (398)
110 KOG1127 TPR repeat-containing 96.9 0.013 2.8E-07 68.5 14.3 150 41-215 474-658 (1238)
111 KOG1174 Anaphase-promoting com 96.9 0.016 3.5E-07 62.5 14.0 190 36-227 244-511 (564)
112 PRK10803 tol-pal system protei 96.9 0.018 3.9E-07 58.8 13.7 94 35-142 154-253 (263)
113 PRK14720 transcript cleavage f 96.8 0.018 4E-07 67.6 14.7 159 51-223 23-205 (906)
114 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0041 9E-08 67.6 8.6 70 100-171 70-142 (453)
115 TIGR00540 hemY_coli hemY prote 96.8 0.045 9.8E-07 58.5 16.5 115 85-214 277-397 (409)
116 KOG1156 N-terminal acetyltrans 96.8 0.013 2.9E-07 65.8 12.5 104 85-190 21-124 (700)
117 KOG1127 TPR repeat-containing 96.8 0.02 4.4E-07 66.9 14.1 126 42-169 509-658 (1238)
118 KOG1128 Uncharacterized conser 96.8 0.019 4E-07 65.3 13.4 157 43-214 442-614 (777)
119 PF14559 TPR_19: Tetratricopep 96.7 0.0044 9.6E-08 48.5 6.1 63 35-110 2-64 (68)
120 PF13371 TPR_9: Tetratricopept 96.7 0.0058 1.3E-07 48.6 6.5 56 86-142 10-65 (73)
121 PF12895 Apc3: Anaphase-promot 96.5 0.0085 1.8E-07 49.5 6.5 68 121-190 4-73 (84)
122 PRK10747 putative protoheme IX 96.4 0.63 1.4E-05 49.7 21.7 188 33-234 127-341 (398)
123 KOG0543 FKBP-type peptidyl-pro 96.3 0.16 3.5E-06 54.6 16.3 94 110-216 262-355 (397)
124 PF06552 TOM20_plant: Plant sp 96.2 0.029 6.4E-07 54.5 9.6 102 122-224 7-117 (186)
125 KOG0543 FKBP-type peptidyl-pro 96.1 0.063 1.4E-06 57.7 12.1 83 87-170 273-355 (397)
126 KOG4234 TPR repeat-containing 96.1 0.029 6.3E-07 55.7 8.8 70 121-191 110-184 (271)
127 COG0457 NrfG FOG: TPR repeat [ 96.0 0.87 1.9E-05 39.4 18.6 156 37-219 108-268 (291)
128 PRK10803 tol-pal system protei 95.9 0.1 2.3E-06 53.2 12.5 106 105-223 142-253 (263)
129 KOG2376 Signal recognition par 95.8 0.31 6.7E-06 54.8 16.3 130 25-176 13-145 (652)
130 KOG1128 Uncharacterized conser 95.8 0.094 2E-06 59.9 12.5 118 37-169 498-615 (777)
131 COG5010 TadD Flp pilus assembl 95.8 0.62 1.3E-05 47.6 17.2 135 42-190 83-217 (257)
132 PF14559 TPR_19: Tetratricopep 95.8 0.031 6.7E-07 43.7 6.4 58 85-143 5-62 (68)
133 PF09295 ChAPs: ChAPs (Chs5p-A 95.8 0.23 4.9E-06 53.8 15.0 103 42-161 186-288 (395)
134 KOG2003 TPR repeat-containing 95.8 0.16 3.5E-06 55.6 13.5 180 31-234 426-605 (840)
135 PF06552 TOM20_plant: Plant sp 95.8 0.049 1.1E-06 53.0 8.7 73 42-116 8-80 (186)
136 KOG2003 TPR repeat-containing 95.7 0.39 8.5E-06 52.6 16.2 170 37-233 503-706 (840)
137 COG0457 NrfG FOG: TPR repeat [ 95.7 1.3 2.7E-05 38.4 20.1 170 36-232 71-247 (291)
138 COG4235 Cytochrome c biogenesi 95.5 0.44 9.5E-06 49.5 15.1 124 85-221 136-261 (287)
139 KOG0495 HAT repeat protein [RN 95.5 0.69 1.5E-05 52.8 17.3 186 33-233 593-799 (913)
140 COG4235 Cytochrome c biogenesi 95.3 0.46 9.9E-06 49.4 14.4 122 42-176 139-262 (287)
141 KOG1129 TPR repeat-containing 95.2 0.26 5.6E-06 52.3 12.3 167 42-234 273-442 (478)
142 PRK15331 chaperone protein Sic 95.2 0.34 7.4E-06 46.5 12.2 82 86-169 52-133 (165)
143 PF12688 TPR_5: Tetratrico pep 94.8 0.57 1.2E-05 42.5 11.9 96 106-215 2-103 (120)
144 COG5010 TadD Flp pilus assembl 94.5 2.4 5.2E-05 43.4 16.9 164 43-233 51-214 (257)
145 PF09976 TPR_21: Tetratricopep 94.5 2.5 5.3E-05 38.5 15.7 127 26-168 13-145 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 94.1 0.89 1.9E-05 49.3 13.6 110 85-211 183-292 (395)
147 PF00515 TPR_1: Tetratricopept 94.0 0.11 2.3E-06 35.6 4.3 33 106-139 2-34 (34)
148 PF13431 TPR_17: Tetratricopep 93.8 0.056 1.2E-06 38.1 2.6 28 163-190 1-28 (34)
149 KOG0376 Serine-threonine phosp 93.7 0.09 2E-06 57.6 5.1 91 85-177 18-108 (476)
150 KOG1174 Anaphase-promoting com 93.7 2.3 5E-05 46.5 15.4 175 36-224 172-371 (564)
151 PF13525 YfiO: Outer membrane 93.6 2.8 6E-05 40.6 15.0 108 26-146 7-130 (203)
152 PF13431 TPR_17: Tetratricopep 93.6 0.077 1.7E-06 37.4 3.0 28 129-156 2-29 (34)
153 COG4785 NlpI Lipoprotein NlpI, 93.5 0.85 1.8E-05 46.2 11.1 92 88-181 82-175 (297)
154 KOG4555 TPR repeat-containing 93.3 1.4 3E-05 41.5 11.5 100 25-138 44-147 (175)
155 PF07719 TPR_2: Tetratricopept 93.1 0.25 5.5E-06 33.3 4.9 33 106-139 2-34 (34)
156 COG4785 NlpI Lipoprotein NlpI, 93.1 0.2 4.4E-06 50.5 6.1 102 111-226 71-174 (297)
157 PF00515 TPR_1: Tetratricopept 93.0 0.16 3.5E-06 34.7 3.9 33 176-220 2-34 (34)
158 KOG4648 Uncharacterized conser 93.0 0.42 9.1E-06 51.0 8.5 93 36-142 109-201 (536)
159 PF07719 TPR_2: Tetratricopept 92.8 0.25 5.4E-06 33.3 4.6 33 176-220 2-34 (34)
160 PF12569 NARP1: NMDA receptor- 92.6 4.3 9.3E-05 45.6 16.3 67 107-175 196-262 (517)
161 KOG1308 Hsp70-interacting prot 92.1 0.16 3.5E-06 53.8 4.2 98 26-137 116-213 (377)
162 PRK15331 chaperone protein Sic 92.1 7.5 0.00016 37.5 15.1 98 23-134 36-133 (165)
163 PF04184 ST7: ST7 protein; In 91.1 2.8 6E-05 46.8 12.4 167 26-234 170-342 (539)
164 KOG2376 Signal recognition par 91.1 2.1 4.6E-05 48.4 11.7 119 85-221 26-144 (652)
165 PF12688 TPR_5: Tetratrico pep 90.5 6.8 0.00015 35.5 12.6 96 60-169 2-103 (120)
166 KOG0376 Serine-threonine phosp 90.5 0.35 7.6E-06 53.1 5.0 71 121-192 19-89 (476)
167 PF13428 TPR_14: Tetratricopep 90.4 0.52 1.1E-05 34.5 4.4 40 177-228 3-42 (44)
168 KOG1129 TPR repeat-containing 89.9 2 4.3E-05 45.8 9.7 159 36-221 302-463 (478)
169 PRK10866 outer membrane biogen 89.7 24 0.00053 35.5 17.9 101 31-144 39-162 (243)
170 PF13424 TPR_12: Tetratricopep 89.4 0.85 1.8E-05 36.6 5.3 68 56-136 2-76 (78)
171 KOG1840 Kinesin light chain [C 89.3 15 0.00032 41.4 16.5 157 33-216 208-396 (508)
172 PF09976 TPR_21: Tetratricopep 89.2 7.9 0.00017 35.1 12.1 113 87-214 27-145 (145)
173 PF13428 TPR_14: Tetratricopep 89.0 0.94 2E-05 33.1 4.8 38 107-145 3-40 (44)
174 PLN03077 Protein ECB2; Provisi 88.9 25 0.00054 41.3 18.9 167 36-236 536-706 (857)
175 PF08424 NRDE-2: NRDE-2, neces 88.8 14 0.00031 38.5 15.2 110 46-156 6-116 (321)
176 KOG4648 Uncharacterized conser 88.3 0.86 1.9E-05 48.7 5.7 92 84-177 110-201 (536)
177 PF13181 TPR_8: Tetratricopept 87.9 1.1 2.4E-05 30.3 4.3 33 106-139 2-34 (34)
178 PRK10941 hypothetical protein; 87.3 4.1 9E-05 42.0 9.9 69 33-114 190-258 (269)
179 KOG4555 TPR repeat-containing 87.2 8.6 0.00019 36.4 10.9 70 120-190 57-130 (175)
180 PF13512 TPR_18: Tetratricopep 86.0 13 0.00028 35.0 11.5 81 27-117 13-96 (142)
181 PF04733 Coatomer_E: Coatomer 85.5 7.6 0.00016 40.2 10.8 88 86-174 182-269 (290)
182 PLN03218 maturation of RBCL 1; 84.7 82 0.0018 38.7 20.4 25 434-459 984-1012(1060)
183 PLN03077 Protein ECB2; Provisi 84.6 31 0.00068 40.5 16.6 137 36-190 566-706 (857)
184 PLN03081 pentatricopeptide (PP 84.6 40 0.00086 38.7 17.1 167 37-236 373-543 (697)
185 KOG4642 Chaperone-dependent E3 83.6 4.8 0.0001 41.3 8.0 80 42-134 27-106 (284)
186 PF13424 TPR_12: Tetratricopep 83.5 1.9 4.1E-05 34.5 4.4 66 103-170 3-75 (78)
187 PF13205 Big_5: Bacterial Ig-l 83.3 8.1 0.00018 32.8 8.5 80 279-371 23-106 (107)
188 PF08424 NRDE-2: NRDE-2, neces 82.1 33 0.00071 35.9 14.0 92 89-181 3-105 (321)
189 PF13525 YfiO: Outer membrane 82.0 29 0.00063 33.6 12.7 101 121-223 20-126 (203)
190 KOG2053 Mitochondrial inherita 81.6 49 0.0011 39.5 16.0 95 85-182 23-117 (932)
191 PLN03081 pentatricopeptide (PP 80.9 66 0.0014 36.9 17.1 46 121-170 375-420 (697)
192 KOG1310 WD40 repeat protein [G 79.2 7.9 0.00017 43.7 8.4 109 102-222 365-480 (758)
193 KOG3824 Huntingtin interacting 78.8 5.8 0.00013 42.1 6.9 75 28-115 120-194 (472)
194 KOG2053 Mitochondrial inherita 78.7 11 0.00023 44.7 9.6 87 121-220 24-110 (932)
195 PF13181 TPR_8: Tetratricopept 78.7 4 8.6E-05 27.5 4.0 34 59-104 1-34 (34)
196 PRK10866 outer membrane biogen 78.3 45 0.00099 33.5 13.1 118 104-223 31-160 (243)
197 PLN03218 maturation of RBCL 1; 78.1 1.8E+02 0.0039 35.9 21.9 75 427-514 825-909 (1060)
198 KOG4642 Chaperone-dependent E3 77.5 9.4 0.0002 39.2 7.8 82 84-167 23-104 (284)
199 PF14863 Alkyl_sulf_dimr: Alky 77.4 8.5 0.00018 36.0 7.0 49 25-74 71-119 (141)
200 KOG2396 HAT (Half-A-TPR) repea 77.3 85 0.0019 35.5 15.5 90 42-144 88-178 (568)
201 PF13512 TPR_18: Tetratricopep 77.0 21 0.00047 33.6 9.5 70 33-107 56-135 (142)
202 PRK10941 hypothetical protein; 76.7 16 0.00034 37.8 9.4 61 120-181 195-255 (269)
203 COG2956 Predicted N-acetylgluc 76.1 1.2E+02 0.0026 32.8 17.6 51 86-137 195-245 (389)
204 PF04733 Coatomer_E: Coatomer 76.1 20 0.00043 37.2 10.1 98 29-138 171-268 (290)
205 KOG1840 Kinesin light chain [C 73.5 1.2E+02 0.0027 34.2 16.0 186 30-238 247-467 (508)
206 COG2956 Predicted N-acetylgluc 72.7 1.5E+02 0.0031 32.2 18.5 139 23-176 106-249 (389)
207 KOG2396 HAT (Half-A-TPR) repea 72.3 23 0.00051 39.7 9.7 62 36-109 117-178 (568)
208 COG3071 HemY Uncharacterized e 72.1 1.6E+02 0.0034 32.3 20.4 174 31-237 160-377 (400)
209 KOG0551 Hsp90 co-chaperone CNS 71.9 13 0.00029 39.8 7.5 114 55-180 75-192 (390)
210 smart00028 TPR Tetratricopepti 69.5 13 0.00028 22.4 4.5 33 176-220 2-34 (34)
211 COG1729 Uncharacterized protei 68.4 48 0.001 34.3 10.5 105 27-142 144-251 (262)
212 PF03704 BTAD: Bacterial trans 68.2 68 0.0015 28.7 10.6 53 33-98 71-123 (146)
213 COG2912 Uncharacterized conser 67.8 32 0.00069 35.7 9.1 90 15-116 171-260 (269)
214 PF04781 DUF627: Protein of un 66.7 47 0.001 30.1 8.9 100 33-135 5-107 (111)
215 PF05843 Suf: Suppressor of fo 65.1 1.7E+02 0.0036 29.9 15.1 129 86-225 16-145 (280)
216 KOG1308 Hsp70-interacting prot 64.7 5.5 0.00012 42.6 3.0 92 85-178 128-220 (377)
217 KOG2796 Uncharacterized conser 64.7 80 0.0017 33.3 11.1 125 37-175 190-320 (366)
218 smart00028 TPR Tetratricopepti 64.5 12 0.00027 22.5 3.6 31 107-138 3-33 (34)
219 PF05843 Suf: Suppressor of fo 63.1 1.2E+02 0.0027 30.9 12.5 122 42-176 18-142 (280)
220 COG3071 HemY Uncharacterized e 61.3 2.6E+02 0.0055 30.8 14.8 67 88-156 311-377 (400)
221 KOG2610 Uncharacterized conser 61.3 1.2E+02 0.0026 33.0 12.0 113 36-163 115-231 (491)
222 PF14853 Fis1_TPR_C: Fis1 C-te 59.0 29 0.00063 27.2 5.4 40 32-72 9-48 (53)
223 KOG1310 WD40 repeat protein [G 57.6 29 0.00062 39.5 7.0 91 85-176 388-480 (758)
224 KOG0551 Hsp90 co-chaperone CNS 53.8 78 0.0017 34.2 9.2 82 44-138 100-185 (390)
225 PF13174 TPR_6: Tetratricopept 53.1 25 0.00053 23.0 3.7 30 108-138 3-32 (33)
226 PF13174 TPR_6: Tetratricopept 53.1 39 0.00085 22.0 4.7 32 61-104 2-33 (33)
227 KOG4340 Uncharacterized conser 50.8 2E+02 0.0043 31.0 11.4 153 33-216 19-173 (459)
228 PF13281 DUF4071: Domain of un 50.6 3.7E+02 0.008 29.3 16.0 178 29-231 146-345 (374)
229 PF02259 FAT: FAT domain; Int 47.2 1.4E+02 0.0031 30.3 9.9 77 26-103 256-341 (352)
230 PF13176 TPR_7: Tetratricopept 46.4 34 0.00073 23.9 3.7 32 177-220 1-34 (36)
231 PF12583 TPPII_N: Tripeptidyl 45.9 37 0.0008 31.8 4.7 53 10-66 65-117 (139)
232 COG5191 Uncharacterized conser 45.2 93 0.002 33.5 8.1 101 48-170 96-196 (435)
233 KOG3785 Uncharacterized conser 44.7 4.7E+02 0.01 28.9 13.8 76 37-128 35-113 (557)
234 PF13226 DUF4034: Domain of un 42.5 2E+02 0.0043 30.1 10.0 68 89-156 61-149 (277)
235 COG5191 Uncharacterized conser 42.2 42 0.00091 36.0 5.0 59 38-109 121-180 (435)
236 PF14853 Fis1_TPR_C: Fis1 C-te 41.7 95 0.0021 24.3 5.8 23 121-143 16-38 (53)
237 PF15297 CKAP2_C: Cytoskeleton 39.6 2.4E+02 0.0052 30.5 10.2 74 18-103 96-172 (353)
238 KOG3785 Uncharacterized conser 38.8 2.9E+02 0.0064 30.4 10.7 116 36-153 69-232 (557)
239 KOG3824 Huntingtin interacting 36.1 58 0.0013 34.9 4.9 62 121-183 131-192 (472)
240 PRK04841 transcriptional regul 32.1 8.9E+02 0.019 28.4 15.7 121 35-170 463-602 (903)
241 KOG2610 Uncharacterized conser 31.9 3.9E+02 0.0084 29.3 10.2 102 86-190 118-224 (491)
242 COG3914 Spy Predicted O-linked 30.5 5.8E+02 0.013 29.6 11.8 103 29-143 70-179 (620)
243 PF14561 TPR_20: Tetratricopep 29.6 1.8E+02 0.0039 24.9 6.2 50 159-220 6-55 (90)
244 KOG0545 Aryl-hydrocarbon recep 27.9 1.6E+02 0.0034 30.9 6.3 56 35-103 241-296 (329)
245 KOG2047 mRNA splicing factor [ 27.0 9.8E+02 0.021 28.4 12.8 162 45-229 335-592 (835)
246 KOG0545 Aryl-hydrocarbon recep 26.4 7.8E+02 0.017 26.0 12.2 58 121-180 245-303 (329)
247 PF03704 BTAD: Bacterial trans 26.3 4.6E+02 0.01 23.2 13.5 46 120-166 76-121 (146)
248 COG4976 Predicted methyltransf 26.1 1.7E+02 0.0037 30.3 6.2 71 159-241 13-83 (287)
249 smart00386 HAT HAT (Half-A-TPR 25.8 1.6E+02 0.0034 18.7 4.2 26 42-67 4-29 (33)
250 PF02259 FAT: FAT domain; Int 25.5 7.1E+02 0.015 25.1 19.5 62 158-219 275-341 (352)
251 cd02683 MIT_1 MIT: domain cont 25.3 40 0.00086 28.3 1.3 38 472-509 16-53 (77)
252 COG2912 Uncharacterized conser 24.2 2.9E+02 0.0063 28.8 7.6 64 121-185 196-259 (269)
253 PF04781 DUF627: Protein of un 22.5 3.4E+02 0.0074 24.7 6.8 65 159-224 14-81 (111)
254 KOG3081 Vesicle coat complex C 22.0 9.6E+02 0.021 25.4 13.4 69 87-156 189-257 (299)
255 COG5107 RNA14 Pre-mRNA 3'-end 22.0 1.2E+03 0.025 26.8 11.9 138 86-233 24-164 (660)
256 COG1729 Uncharacterized protei 21.6 7.6E+02 0.017 25.7 10.0 92 120-224 155-252 (262)
257 KOG1915 Cell cycle control pro 21.6 1.3E+03 0.027 26.7 17.2 176 13-210 55-237 (677)
258 PF15469 Sec5: Exocyst complex 21.4 7E+02 0.015 23.6 9.4 37 20-57 79-118 (182)
259 KOG1070 rRNA processing protei 20.0 2E+03 0.043 28.4 17.5 98 35-144 1540-1638(1710)
No 1
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-72 Score=579.71 Aligned_cols=410 Identities=42% Similarity=0.687 Sum_probs=349.2
Q ss_pred CCCCcCC-CCChHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC
Q 009766 1 MHGRPRK-PLKPEDAAASAA---KAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (526)
Q Consensus 1 mhgr~~~-~~~~e~~~~~~~---~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~ 76 (526)
||||+|+ ++++|.+++.++ ++..|+.++++|..+++.|+|++++|.++.++|..||++|++||||+.++.......
T Consensus 1 Mhg~~kv~~~eee~~~k~~~~~~k~~~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~ 80 (421)
T KOG0529|consen 1 MHGRLKVKTTEEEKEAKLKERAFKAGQLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA 80 (421)
T ss_pred CCcccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh
Confidence 9999999 677777775544 778888999999999999999999999999999999999999999999999886433
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCc
Q 009766 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (526)
Q Consensus 77 ~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~-~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~ 155 (526)
+.+|...+..+++||.++..||+.|||+|.+||||+|+|.+... .+..||++|+++++.||||||||+|||||+....+
T Consensus 81 ~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 81 QLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 55676777899999999999999999999999999999997653 48999999999999999999999999999999988
Q ss_pred C---hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHc
Q 009766 156 S---EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (526)
Q Consensus 156 ~---~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~ 232 (526)
. +.+|++||+++|..||+||||||||+.+|+.+.++...|..-..+.+..|++.+.+|+++||+|+|+|+|++||++
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 7 7899999999999999999999999999999998777773223456799999999999999999999999999999
Q ss_pred cccCCCCCcccccCCCCCCcceecCCccccCCCCCCcccccCCCCCcceeEeeccccccccccceEEecccCcCccceee
Q 009766 233 QTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTNKDLVWK 312 (526)
Q Consensus 233 ~~~~~e~~~~~~~w~~~~~~~~l~~~~~l~~~~~s~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~w~ 312 (526)
+.++.+ |..++. + .+++.++.+|.+.+|-+.+.||++ ++.++. +
T Consensus 241 ~~~~~~---------------------~~~~S~-s---~~ls~~~~~p~~~~l~~e~~~v~~---~i~~E~--------~ 284 (421)
T KOG0529|consen 241 RGMRRE---------------------CYIVSH-S---ALLSESFSEPLIKYLRSEIGLVQS---TIGSEF--------E 284 (421)
T ss_pred cccccc---------------------cccccc-c---cccccccCCccHHHHHHHhhhhhh---hhhhhc--------c
Confidence 987765 222211 1 456778899999999999999864 333333 3
Q ss_pred e-CCCCCCccceeEEEeccCCCCCCCCCccceEEEecCcccccccCCCcccCCCcceEEEEEEeecccccccccccceee
Q 009766 313 P-LSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQPVEALGKEIIS 391 (526)
Q Consensus 313 p-~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (526)
+ ++..+ |.|+.+. +|..|++ |.+|+.+.+..+.+ .++
T Consensus 285 ~~~d~~g------w~~~~~~-----------------------------n~~s~~~---~~~v~~~~e~~~~~----~~~ 322 (421)
T KOG0529|consen 285 TPIDKRG------WLCESLV-----------------------------NLESPYE---TKRVHLTVEDQQFG----IVS 322 (421)
T ss_pred ccccccC------chhcccc-----------------------------chhhhhh---cccccccccccccc----ccc
Confidence 3 33222 7777553 5667777 55666666555555 899
Q ss_pred ccCCCccccc-cccCCCCCcccccccccccCCccchhhhhHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhcCC
Q 009766 392 WRDESFHNYN-AHSQDSSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLSLINCKIGKLTLARLLMAHDAMMCP 470 (526)
Q Consensus 392 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (526)
|++ +++.|. +...+.+++. -++.+...|..++|..++++++-+| |+|+|+||+|+|++|.+.|.+.
T Consensus 323 ~~~-~~e~~~~~~~~~l~~~~---------~~e~~~~a~lqe~ie~c~~l~~~~P---~~k~~~l~~~~l~~a~e~~~~~ 389 (421)
T KOG0529|consen 323 WVA-SNEQWLHALLDDLDSLD---------CNEETRRAWLQEQIESCVELQELLP---DSKWGLLTSALLLRALEPMDSE 389 (421)
T ss_pred chh-hhhhhHHHHhhhccccc---------hhhhccHHHHHHHHHHHHHHHhhCC---ccchhHHHHHHHHhccccccch
Confidence 998 888888 5665555533 3788999999999999999999999 8999999999999999999983
Q ss_pred CCCCCcchHHHHHHHHHhhccCcchhhhhhchhhhhhhh
Q 009766 471 PANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQ 509 (526)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (526)
||+|++|++||++||.|.+||||+||..+|+
T Consensus 390 --------~~~l~~~~~le~~d~~~~~yykdl~s~~~l~ 420 (421)
T KOG0529|consen 390 --------EEILQLYNDLEALDPGRHQYYKDLHSRFLLE 420 (421)
T ss_pred --------HHHHHHHHHHhccchhhhHHHHhHHHHhccC
Confidence 9999999999999999999999999998875
No 2
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=336.31 Aligned_cols=207 Identities=28% Similarity=0.519 Sum_probs=192.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhH
Q 009766 8 PLKPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSIL 87 (526)
Q Consensus 8 ~~~~e~~~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~ 87 (526)
...+|+|+++|+|+++||+++++|++.+..+++|++||++++.+|..||.+||+|+||+.+|.+++ ..+
T Consensus 26 qdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~-----------~dL 94 (318)
T KOG0530|consen 26 QDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM-----------SDL 94 (318)
T ss_pred CCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH-----------HHH
Confidence 467889999999999999999999999999999999999999999999999999999999999997 368
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHH
Q 009766 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSID-NELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (526)
Q Consensus 88 ~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~e-eELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdk 166 (526)
.+||++.+.++..|||||++||||++++..++ .+. +||+++..+|..|.||||||+||.|+++.++.+ ++||.|+++
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~-~~EL~y~~~ 172 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY-EDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH-HHHHHHHHH
Confidence 99999999999999999999999999999886 555 999999999999999999999999999999998 589999999
Q ss_pred HHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 167 MICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 167 aI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
+|+.|..|+|||+||.+++.+.. |+.+ ...+++|+.+..+.|.+.|+|+|+|+|+++++..
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~-----~~~~-~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTK-----GVIS-KAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHhhhccchhheeeEEEEecc-----CCcc-HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 99999999999999999987642 2222 2457999999999999999999999999999987
No 3
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=2.1e-38 Score=326.94 Aligned_cols=207 Identities=27% Similarity=0.499 Sum_probs=189.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHH
Q 009766 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (526)
Q Consensus 10 ~~e~~~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~e 89 (526)
.++.++.+++|.++|+.++++|++.+..++++++||.+++++|.+||++||+|++|+.+|..++. .+++
T Consensus 22 ~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-----------~l~e 90 (320)
T PLN02789 22 DGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-----------DLEE 90 (320)
T ss_pred CCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-----------hHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999862 5899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHH
Q 009766 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (526)
Q Consensus 90 EL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~-~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI 168 (526)
||++++++++.|||+|++|+||+|++.+++. .+++|++++++++++||+|||||+||+|++..++.+ ++||++|+++|
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~-~eeL~~~~~~I 169 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW-EDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 9999999999999999999999999998863 247899999999999999999999999999999998 58999999999
Q ss_pred HhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 169 ~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
+.||+|+|||+||++++.+++.. .....++++|++++.++|.++|+|+|+|+|+++++..
T Consensus 170 ~~d~~N~sAW~~R~~vl~~~~~l-----~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 170 EEDVRNNSAWNQRYFVITRSPLL-----GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHCCCchhHHHHHHHHHHhcccc-----ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 99999999999999999887421 0122356889999999999999999999999999976
No 4
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=302.87 Aligned_cols=226 Identities=35% Similarity=0.601 Sum_probs=192.6
Q ss_pred CCCCcCC-CC----ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcC
Q 009766 1 MHGRPRK-PL----KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTE 75 (526)
Q Consensus 1 mhgr~~~-~~----~~e~~~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~ 75 (526)
|||-.|+ +. .-+.+.+++.+.+.|+.+++.|++++...+|+.+||+++..+|..||++|++||||+.++.+...
T Consensus 3 ~~~~~r~~~~~~q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~- 81 (328)
T COG5536 3 DLDLRRVKPLPIQFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQM- 81 (328)
T ss_pred cccchhccccccchhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhh-
Confidence 6777776 32 33457788889999999999999999999999999999999999999999999999999999431
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhC
Q 009766 76 NDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (526)
Q Consensus 76 ~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~-~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg 154 (526)
.+ +.-...++.||++++.+++.|||+|+.||||+|+|.... +++.+|+..++++|+.|+||||+|+||+|++....
T Consensus 82 -~s--edk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie 158 (328)
T COG5536 82 -VS--EDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIE 158 (328)
T ss_pred -hc--ccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecch
Confidence 11 111246899999999999999999999999999999763 57999999999999999999999999999995432
Q ss_pred c-----ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 009766 155 R-----SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (526)
Q Consensus 155 ~-----~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~ 229 (526)
. ...+|++++..+|+.|++|+||||||..++..+... |--...+.+.+||+++.++++++|+|+|+|.|+||
T Consensus 159 ~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~---~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 159 DLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNR---GDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred hhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhh---cccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 1 246899999999999999999999998877776542 21122335899999999999999999999999999
Q ss_pred HHcc
Q 009766 230 LLDQ 233 (526)
Q Consensus 230 LL~~ 233 (526)
+.+.
T Consensus 236 ~~~~ 239 (328)
T COG5536 236 VSSE 239 (328)
T ss_pred Hhcc
Confidence 9976
No 5
>PLN02789 farnesyltranstransferase
Probab=99.94 E-value=2.2e-25 Score=230.25 Aligned_cols=172 Identities=27% Similarity=0.404 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
+++|++++++|..||++|++|++|++++.+++. ..+.+|+.+++++|..|||||+||+||+|++.+++ .
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-~ 157 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-G 157 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-h
Confidence 899999999999999999999999999998863 13578999999999999999999999999999985 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHh---CcC---hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NRS---EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~L---g~~---~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g 195 (526)
+++||++|+++|+.||+|++||+||++++.++ +.. .++|++|++++|..+|+|+|||+|+++++..... +
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~----~ 233 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE----A 233 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc----c
Confidence 99999999999999999999999999999887 322 2579999999999999999999999999987321 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHc
Q 009766 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (526)
Q Consensus 196 ~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~ 232 (526)
+ -...++++++.+++..+|+..-+--++.-++.
T Consensus 234 l----~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 234 L----VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred c----ccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 0 01245778888888888888876666555554
No 6
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.8e-24 Score=220.12 Aligned_cols=138 Identities=27% Similarity=0.520 Sum_probs=125.3
Q ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 009766 40 YSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH 119 (526)
Q Consensus 40 yseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~ 119 (526)
..++.|.+...+|+.|||.|++||+|+++|++... ..+..||.+|+++|+.||+||++|+|||||+.+..
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~----------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH----------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 34788999999999999999999999999998863 36899999999999999999999999999999765
Q ss_pred CC---hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHh------Cc-----ChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 120 SS---IDNELRLLDKFQKADSRNFHAWNYRRFVAASM------NR-----SEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 120 ~~---~eeELe~~dkaLeiDprNyhAW~yRr~lL~~L------g~-----~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
.. ..+|+++|+++|.-+++|||||+||.+++..+ |. ....||+++..+|..||.|+|+|+|+.|+|
T Consensus 160 ~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 160 RSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred cccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 44 67999999999999999999999999999966 21 136899999999999999999999999998
Q ss_pred HH
Q 009766 186 SN 187 (526)
Q Consensus 186 ~~ 187 (526)
..
T Consensus 240 ~~ 241 (421)
T KOG0529|consen 240 GR 241 (421)
T ss_pred cc
Confidence 87
No 7
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9e-22 Score=195.73 Aligned_cols=137 Identities=26% Similarity=0.504 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHH
Q 009766 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (526)
Q Consensus 88 ~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdka 167 (526)
.++|++++.+|..||-||++|+||+-+|..+...+.+||++++.+++-+||||..|+||+++++.++.+.-.||+||..+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 78999999999999999999999999999988788999999999999999999999999999999998765899999999
Q ss_pred HHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccC
Q 009766 168 ICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (526)
Q Consensus 168 I~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~ 236 (526)
|..+..||.||.||.|+++..+. ++.||.+++..|+.|--|.|||+++.+++..+.+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~------------~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~ 196 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKD------------YEDELAYADELLEEDIRNNSAWNQRYFVITNTKG 196 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhh------------HHHHHHHHHHHHHHhhhccchhheeeEEEEeccC
Confidence 99999999999999999998753 8999999999999999999999999999987644
No 8
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=167.42 Aligned_cols=139 Identities=23% Similarity=0.379 Sum_probs=120.3
Q ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 009766 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (526)
Q Consensus 39 eyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl 118 (526)
.|-+..|+.++.+++-||++|++||||+++|..... ..+..|+.+++++|..+|+||++|+||+|++...
T Consensus 88 ~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~----------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~i 157 (328)
T COG5536 88 HLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK----------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTI 157 (328)
T ss_pred hhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC----------cccchhHHHHHHHhcccccccceeeeEeeeeecc
Confidence 345678999999999999999999999999988753 3599999999999999999999999999999543
Q ss_pred C-----CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH-h--Cc-----ChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 119 H-----SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS-M--NR-----SEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 119 ~-----~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~-L--g~-----~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
. +.+.+|+++...+|..|+.|++||+||-..+.. + |. +.++||++...++-.+|.|.|+|.|..+++
T Consensus 158 e~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 158 EDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred hhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 2 457799999999999999999999999333332 2 21 247899999999999999999999999998
Q ss_pred HH
Q 009766 186 SN 187 (526)
Q Consensus 186 ~~ 187 (526)
.+
T Consensus 238 ~~ 239 (328)
T COG5536 238 SE 239 (328)
T ss_pred cc
Confidence 87
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=1.9e-11 Score=135.89 Aligned_cols=173 Identities=14% Similarity=-0.015 Sum_probs=158.3
Q ss_pred cCCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLET---NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~i---NPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrw 113 (526)
.+.| ++|+..++++|.. +|+...+|+.++.+...++ .+++++..+++++..+|++..+|..+++
T Consensus 307 ~~~y-~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g------------~~~eA~~~~~kal~l~P~~~~~~~~la~ 373 (615)
T TIGR00990 307 DESY-EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG------------KHLEALADLSKSIELDPRVTQSYIKRAS 373 (615)
T ss_pred hhhH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3566 7899999999987 4888999999999988876 4899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 009766 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (526)
Q Consensus 114 vL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~ 193 (526)
++...+ .+++++..++++++.+|.+..+|.+++.+...+|.+. ++++++++++..+|.|..+|.+++.++..++.
T Consensus 374 ~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--- 448 (615)
T TIGR00990 374 MNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA-QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--- 448 (615)
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC---
Confidence 998874 8999999999999999999999999999999999984 89999999999999999999999999888765
Q ss_pred cCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccC
Q 009766 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (526)
Q Consensus 194 ~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~ 236 (526)
+++++..+.+++..+|++..+|++++.++....+
T Consensus 449 ---------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 449 ---------IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred ---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 7999999999999999999999999888876543
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.38 E-value=3.1e-11 Score=134.10 Aligned_cols=162 Identities=13% Similarity=0.002 Sum_probs=150.5
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
..|++ ++|+..+.++|.++|++..+|..++.++..++ .+++++..+++++..+|++..+|++|+.+.
T Consensus 343 ~~g~~-~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g------------~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 343 LKGKH-LEALADLSKSIELDPRVTQSYIKRASMNLELG------------DPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred HcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46888 89999999999999999999999999998876 489999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 009766 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g 195 (526)
...+ .+++++.+++++++++|.|..+|.+++.+...+|.+. +++..+.+++..+|.+..+|++.+.++..+++
T Consensus 410 ~~~g-~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~-eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~----- 482 (615)
T TIGR00990 410 FIKG-EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-SSMATFRRCKKNFPEAPDVYNYYGELLLDQNK----- 482 (615)
T ss_pred HHcC-CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-----
Confidence 8884 9999999999999999999999999999999999984 89999999999999999999999999988764
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 196 ~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
++++++.+.+|+.++|++...|
T Consensus 483 -------~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 483 -------FDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred -------HHHHHHHHHHHHhcCCcccccc
Confidence 7999999999999999876554
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=1.6e-10 Score=106.28 Aligned_cols=126 Identities=10% Similarity=-0.071 Sum_probs=116.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 009766 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (526)
Q Consensus 46 ~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeE 125 (526)
.+++++|.++|++ |..++.++...+ .+++++.++..++..+|.++.+|..++.++...+ .++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A 77 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEG------------DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK-EYTTA 77 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-hHHHH
Confidence 4689999999996 556888887776 4899999999999999999999999999999885 99999
Q ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 009766 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (526)
Q Consensus 126 Le~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L 188 (526)
+.+|+++++++|.+..+|.+++.++..+|.+. ++++.+.++|..+|.|..+|..|+.+...+
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~-eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPG-LAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999994 899999999999999999999999987765
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=1.2e-09 Score=120.56 Aligned_cols=178 Identities=9% Similarity=-0.028 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
++|+.++.+++.++|++..+|.....+...+......++ ...+.+++..+++++..+|++..+|..++.++...+ .
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~---~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-~ 353 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDK---QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-E 353 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCccc---chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-C
Confidence 689999999999999999999988876655432100111 235799999999999999999999999998888774 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhh
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~e 201 (526)
+++++..++++++++|.|..+|.+.+.++...|.++ ++++.++++++.+|.+..++.++..++...++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~-eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~----------- 421 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLE-EALQTINECLKLDPTRAAAGITKLWITYYHTG----------- 421 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-----------
Confidence 999999999999999999999999999999999984 79999999999999998776666665544432
Q ss_pred hHHHHHHHHHHHHHhC-CCCcccHHHHHHHHccccC
Q 009766 202 VLPDEYEFVHQAIFTD-PDDQSGWFYHLWLLDQTVR 236 (526)
Q Consensus 202 ileeELe~v~~AI~~d-P~DeSaW~Y~r~LL~~~~~ 236 (526)
++++++.+.+++..+ |++..++.++..++..+.+
T Consensus 422 -~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 422 -IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred -HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 689999999999885 7788788887777755443
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.20 E-value=2.3e-10 Score=105.14 Aligned_cols=125 Identities=8% Similarity=-0.096 Sum_probs=114.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc
Q 009766 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (526)
Q Consensus 92 ~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n 171 (526)
..++++++.+|.+ |.++++++...+ .+++++.+|.+++..+|.+..+|..++.++..+|.+. ++++++.+++..+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEG-DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT-TAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcC
Confidence 6789999999986 667899998874 8999999999999999999999999999999999994 8999999999999
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 172 PsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
|.|..+|++++.++..+++ ++++++.+..++..+|+|...|..++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE------------PGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999876 6999999999999999999999777766543
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1.6e-08 Score=93.60 Aligned_cols=175 Identities=13% Similarity=0.048 Sum_probs=149.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 009766 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (526)
Q Consensus 32 ~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HR 111 (526)
......|++ ++|+..+.+++..+|++..+|..++.+....+ .++++++.+++++..+|++..+|...
T Consensus 39 ~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 39 LGYLEQGDL-EVAKENLDKALEHDPDDYLAYLALALYYQQLG------------ELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 344567888 89999999999999999999999999888876 47999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhC--CCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 009766 112 KWILSKGHSSIDNELRLLDKFQKAD--SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (526)
Q Consensus 112 rwvL~kl~~~~eeELe~~dkaLeiD--prNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~ 189 (526)
+.++...+ .++++++.+.++++.. +....+|...+.+....+.+. ++.+++++++..+|.+..+|...+.++...+
T Consensus 106 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQG-KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD-KAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcc-cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 99998874 8999999999999853 566778888888888888884 7999999999999999999988888877665
Q ss_pred hhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 190 ~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
. +++++..+.+++...|.+...|.....+...
T Consensus 184 ~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 184 Q------------YKDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred C------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4 6889999999999988887777555444433
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=3.1e-09 Score=108.45 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=95.7
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwv 114 (526)
...|.+ ++|+..+.++|.++|++..+|+.++.++...+ .+++++..++++++++|++..+|..|+.+
T Consensus 75 ~~~g~~-~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 75 DSLGLR-ALARNDFSQALALRPDMADAYNYLGIYLTQAG------------NFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred HHCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356777 79999999999999999999999999998887 48999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChh--hhhHHHHHHHHhCcChHHHHHHHHHHHHhc
Q 009766 115 LSKGHSSIDNELRLLDKFQKADSRNFH--AWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (526)
Q Consensus 115 L~kl~~~~eeELe~~dkaLeiDprNyh--AW~yRr~lL~~Lg~~~eeELe~tdkaI~~n 171 (526)
+...+ .++++++.++++++++|.+.. .|.+ +....+.+ +++++.+.+.+...
T Consensus 142 l~~~g-~~~eA~~~~~~al~~~P~~~~~~~~~~---l~~~~~~~-~~A~~~l~~~~~~~ 195 (296)
T PRK11189 142 LYYGG-RYELAQDDLLAFYQDDPNDPYRALWLY---LAESKLDP-KQAKENLKQRYEKL 195 (296)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHccCCH-HHHHHHHHHHHhhC
Confidence 98874 899999999999999999863 3321 12223333 35666665555443
No 16
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=3.8e-09 Score=116.66 Aligned_cols=163 Identities=12% Similarity=-0.035 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
++|+..+.+++.++|++..+|..++.++...+ .+++++..+++++..+|.+..+|++.+.++...+ .
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G-~ 387 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHS------------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG-Q 387 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-C
Confidence 79999999999999999999999999888776 4899999999999999999999999999999884 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc-cCChhHHHHHHHHHHHhhhhhccCccchh
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN-FSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n-PsNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (526)
+++++..++++++++|.+..++.++.+++-..+.+ +++++.+.+++..+ |.+..++.+.+.++..+++
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~-eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~---------- 456 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGI-DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK---------- 456 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH-HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC----------
Confidence 99999999999999999887777777777777887 58999999999886 7777888889988887775
Q ss_pred hhHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 009766 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (526)
Q Consensus 201 eileeELe~v~~AI~~dP~DeSaW~Y~r~L 230 (526)
++++.+.+.++....|++..++....-.
T Consensus 457 --~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 457 --HELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred --HHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 6889999988888888877777654443
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=7.6e-09 Score=105.62 Aligned_cols=120 Identities=12% Similarity=-0.017 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhCC---Cc-HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 009766 42 KEAVELSTKLLETNP---EL-YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (526)
Q Consensus 42 eEAL~lt~kaL~iNP---d~-ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~k 117 (526)
+.++..+.++|..+| +. ..+|+.|+.+...++ .+.+++..+++++..+|+++.+|++++.++..
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLG------------LRALARNDFSQALALRPDMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 678888999996444 33 688999999988887 47899999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCCh
Q 009766 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (526)
Q Consensus 118 l~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNy 175 (526)
.+ .++++++.++++++++|.+..+|..|+.++...|++ +++++.+++++..+|.|.
T Consensus 111 ~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 111 AG-NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY-ELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCH
Confidence 85 999999999999999999999999999999999998 489999999999999996
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.02 E-value=2.8e-08 Score=109.98 Aligned_cols=47 Identities=15% Similarity=-0.020 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhc
Q 009766 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLT 74 (526)
Q Consensus 27 l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~ 74 (526)
+...-.....+|+| ++|+..+.+++.++|++..+|+.++.++...++
T Consensus 25 ~~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 71 (899)
T TIGR02917 25 LIEAAKSYLQKNKY-KAAIIQLKNALQKDPNDAEARFLLGKIYLALGD 71 (899)
T ss_pred HHHHHHHHHHcCCh-HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34444455578999 899999999999999999999999999888764
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.99 E-value=3e-08 Score=116.47 Aligned_cols=162 Identities=7% Similarity=-0.087 Sum_probs=133.8
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwv 114 (526)
.+.|.+ ++|+.++.+++..+|++..+.......+... ..+++++..+++++..+|. ..+|...+.+
T Consensus 553 l~~Gd~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~------------Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~ 618 (987)
T PRK09782 553 QAAGNG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIP------------GQPELALNDLTRSLNIAPS-ANAYVARATI 618 (987)
T ss_pred HHCCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 345555 5666666666666666654443322222222 3689999999999999996 9999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhcc
Q 009766 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (526)
Q Consensus 115 L~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~ 194 (526)
+.+.+ .++++++.+.+++..+|.|..++...++++...|.+ +++++.+.++++.+|.|..+|.+++.++..+++
T Consensus 619 l~~lG-~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---- 692 (987)
T PRK09782 619 YRQRH-NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-AQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---- 692 (987)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----
Confidence 99885 899999999999999999999999999999999998 589999999999999999999999999998876
Q ss_pred CccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 195 g~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
+++++.++.+++.++|++...=
T Consensus 693 --------~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 693 --------MAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred --------HHHHHHHHHHHHhcCCCCchhh
Confidence 6999999999999999876544
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.98 E-value=6.1e-09 Score=114.17 Aligned_cols=182 Identities=14% Similarity=0.058 Sum_probs=155.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
.|.+ ++||.+|..+|++.|++..||...+.++...++ ...+..+|..+|++||..|.+-.+-+-++.
T Consensus 129 rg~~-~~al~~y~~aiel~p~fida~inla~al~~~~~------------~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 129 RGQL-QDALALYRAAIELKPKFIDAYINLAAALVTQGD------------LELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred hchH-HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC------------CcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 4677 899999999999999999999999999988863 578889999999999999999999999998
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc---
Q 009766 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV--- 193 (526)
Q Consensus 117 kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~--- 193 (526)
..+ ++.++-++|-++++.+|...-||+.-+-++...|..+ .+|+.+++++.++|.--.|+.+.|.+++.+.....
T Consensus 196 a~G-rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~-~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEG-RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIW-LAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhc-ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHH-HHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 874 8899999999999999999999999999999988875 79999999999999999999999999998875310
Q ss_pred -----c----------Ccc----chhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 194 -----E----------GFV----SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 194 -----~----------g~~----~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
. |+. -.+..++-+|++|+++|.++|+-+.+++.....|..
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 0 000 113346777888888888888888888777776654
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.96 E-value=9.1e-08 Score=105.96 Aligned_cols=140 Identities=12% Similarity=-0.052 Sum_probs=105.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwv 114 (526)
...|++ ++|+..+.+++..+|++..+|.....++...+ .+++++..+++++..+|.+..+|..++.+
T Consensus 136 ~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 136 LGLGQL-ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN------------RFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred HHcCCH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 346777 78888888888888888888888877776665 46778888888888888888888888777
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 009766 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (526)
Q Consensus 115 L~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~ 189 (526)
....+ .+++++..++++++.+|.+..+|..++.++...|.+. ++...++++++.+|.+..++..++.+....+
T Consensus 203 ~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
T TIGR02917 203 LLSLG-NIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE-EAEKHADALLKKAPNSPLAHYLKALVDFQKK 275 (899)
T ss_pred HHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 77663 7778888888888888888888888877777777763 6777777777777777777766666654443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.95 E-value=3.6e-08 Score=111.35 Aligned_cols=174 Identities=9% Similarity=-0.110 Sum_probs=137.8
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009766 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (526)
Q Consensus 34 ~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrw 113 (526)
....|.+ ++|+..+.+++..+|++..+++..+.++...+... ....+++..+++++..+|.+..+|...+.
T Consensus 222 l~~~g~~-~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~--------eA~~~A~~~~~~Al~l~P~~~~a~~~lg~ 292 (656)
T PRK15174 222 LCAVGKY-QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR--------EAKLQAAEHWRHALQFNSDNVRIVTLYAD 292 (656)
T ss_pred HHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch--------hhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3456888 78999999999999999999999999888887410 01135899999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 009766 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (526)
Q Consensus 114 vL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~ 193 (526)
++...+ .+++++..++++++.+|.+..++.+.+.++...|.++ ++++.+.+++..+|.+..++.+++.++..+++...
T Consensus 293 ~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~-eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 293 ALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT-AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 999885 8999999999999999999999999999999999984 89999999999999987666667777777765321
Q ss_pred ----------cCccchhhhHHHHHHHHHHHHHhCC
Q 009766 194 ----------EGFVSKEKVLPDEYEFVHQAIFTDP 218 (526)
Q Consensus 194 ----------~g~~~~~eileeELe~v~~AI~~dP 218 (526)
.......+.+.+++..+.+++..-+
T Consensus 371 A~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 371 AESVFEHYIQARASHLPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcC
Confidence 0001123345566666666665543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=8.6e-08 Score=108.30 Aligned_cols=186 Identities=9% Similarity=-0.057 Sum_probs=106.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC----------CCCch-----------h--------
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPDS-----------L-------- 83 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~----------sdPe~-----------~-------- 83 (526)
.....|++ ++|+..+.+++.++|++..+|..+..++...++.++ ..|+. .
T Consensus 119 ~l~~~g~~-~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQY-ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Confidence 34456777 778888888888888888888887777666654211 01100 0
Q ss_pred ---------------------------hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHH----HHHHHHHH
Q 009766 84 ---------------------------KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDN----ELRLLDKF 132 (526)
Q Consensus 84 ---------------------------~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~ee----ELe~~dka 132 (526)
...+++++..+++++..+|.+..+++..+.++...+ .+++ ++..++++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG-RSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHH
Confidence 123344555555555555555555555555554443 3432 45566666
Q ss_pred HHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHH
Q 009766 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQ 212 (526)
Q Consensus 133 LeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~ 212 (526)
++.+|.+..+|...+.++...|.+. +++..+++++..+|.+..++.+.+.++..+++ ++++++.+.+
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~-eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~------------~~eA~~~l~~ 343 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNE-KAIPLLQQSLATHPDLPYVRAMYARALRQVGQ------------YTAASDEFVQ 343 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHH
Confidence 6666666666666666655555553 55555666666666666665555555554443 5677777777
Q ss_pred HHHhCCCCcccHHHHHHHHcc
Q 009766 213 AIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 213 AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
++..+|++...+.+...++..
T Consensus 344 al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHhCccchHHHHHHHHHHHH
Confidence 777777665433333444433
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.92 E-value=2.6e-08 Score=109.29 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=107.4
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
+|.. +-|++.|.++|...|.+..|+|.-..+|...|+ +.++.++++++|..+|....+-++-+-+..
T Consensus 299 qG~l-dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~------------V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 299 QGLL-DLAIDTYKRALELQPNFPDAYNNLANALKDKGS------------VTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred cccH-HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc------------hHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3555 678888888888888888888888888888763 455555555555555555555555544444
Q ss_pred hCC---------------------------------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHH
Q 009766 117 KGH---------------------------------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (526)
Q Consensus 117 kl~---------------------------------~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~ 163 (526)
..+ +.+++++.+|+.+|.++|....|.++++-.+..+|... .++++
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~-~A~q~ 444 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS-AAIQC 444 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH-HHHHH
Confidence 332 24455555555555555555555555555555555442 45555
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 164 tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
++++|..||.-..|..+.+.+.+--+. +.++|..|.+++.++|+-..+.+.+...+.-
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGn------------i~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGN------------IPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCC------------cHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 555555555555555444444332221 4899999999999999999999988777754
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=5e-09 Score=115.46 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..++.++.++..+|..+|.+|.||+.-+.+..+.. .++.+.-.+.++++++|+|----.|-+-+...++..+ ++|+++
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe-k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d-~AL~~~ 546 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE-KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD-KALQLY 546 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc-hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh-HHHHHH
Confidence 45788888888888888888888888888887763 7788888888888888888888888888888888874 788888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccCCCCCcccc
Q 009766 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQLVS 244 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~~e~~~~~~ 244 (526)
++++..||.|.-.=++|+.+|..+++ +++|+..+.+.-.+-|++.+..+-.+-...+..+....+.=-
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~------------~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGR------------YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcc------------hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 88888888888888888888888876 577777777777788888888865555555555544333333
Q ss_pred cC
Q 009766 245 SW 246 (526)
Q Consensus 245 ~w 246 (526)
+|
T Consensus 615 ~~ 616 (638)
T KOG1126|consen 615 SW 616 (638)
T ss_pred HH
Confidence 34
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.3e-08 Score=110.26 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=142.4
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
...+| +.|+..+..+|..+|.||-||..-|.+..+.+ .++.+.-.+.+|+.+||.|-..--|-+.++
T Consensus 467 ~~ee~-d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe------------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 467 ATEEF-DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE------------KLEFAEFHFQKAVEINPSNSVILCHIGRIQ 533 (638)
T ss_pred hhHHH-HhHHHHHHhhhcCCchhhHHHHhhhhheeccc------------hhhHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence 34567 78999999999999999999999999988776 488999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 009766 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g 195 (526)
.+++ ..+++|.++++++.+||+|.++=.+|+-++-.++++. ++|.-.+++-+.-|.+.++.+-.+.+...++.
T Consensus 534 ~~~k-~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~-eal~~LEeLk~~vP~es~v~~llgki~k~~~~----- 606 (638)
T KOG1126|consen 534 HQLK-RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV-EALQELEELKELVPQESSVFALLGKIYKRLGN----- 606 (638)
T ss_pred HHhh-hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH-HHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc-----
Confidence 9885 8899999999999999999999999999999999995 79999999999999999999999999888875
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 196 FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 196 ~~~~~eileeELe~v~~AI~~dP~De 221 (526)
...++--+--|..+||.-.
T Consensus 607 -------~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 607 -------TDLALLHFSWALDLDPKGA 625 (638)
T ss_pred -------chHHHHhhHHHhcCCCccc
Confidence 3667777777888888643
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.84 E-value=2e-07 Score=111.37 Aligned_cols=188 Identities=15% Similarity=0.049 Sum_probs=148.2
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChH--HHHH-
Q 009766 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG--AWHH- 110 (526)
Q Consensus 34 ~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~--AW~H- 110 (526)
....|++ ++|+..+.++|.++|++..+|...+.++...+ .+++++.++++++..+|++.. .|..
T Consensus 279 ~~~~g~~-~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g------------~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 279 AVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQG------------DRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 4467888 89999999999999999999999999998886 489999999999999998764 2311
Q ss_pred ----H-------HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHH
Q 009766 111 ----R-------KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (526)
Q Consensus 111 ----R-------rwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~ 179 (526)
+ +.+.... +.++++++.++++++++|.+..++...+.++...+.+ ++++++++++++.+|.|..+|.
T Consensus 346 l~~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~-~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY-AAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 1 2222233 4799999999999999999999999999999999998 4899999999999999999998
Q ss_pred HHHHHHHHhhhhhccC------------c------------------cchhhhHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 009766 180 NRSLLLSNLLKRKVEG------------F------------------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (526)
Q Consensus 180 yR~~LL~~L~~~~~~g------------~------------------~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~ 229 (526)
....++.......... . -.....++++++.+.+++..+|++..+++.+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7777653211000000 0 001234689999999999999999888877777
Q ss_pred HHccccC
Q 009766 230 LLDQTVR 236 (526)
Q Consensus 230 LL~~~~~ 236 (526)
++.+...
T Consensus 504 ~~~~~G~ 510 (1157)
T PRK11447 504 DLRQAGQ 510 (1157)
T ss_pred HHHHcCC
Confidence 6655433
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.80 E-value=2.8e-07 Score=108.46 Aligned_cols=158 Identities=11% Similarity=-0.008 Sum_probs=141.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
..|.+ ++|+..+.++|.++|+ ..+|...+.++.+++ .+++++.++++++..+|++..+++..++++
T Consensus 588 ~~Gr~-~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG------------~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 588 IPGQP-ELALNDLTRSLNIAPS-ANAYVARATIYRQRH------------NVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred hCCCH-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45888 8999999999999997 999999999999887 489999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 009766 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g 195 (526)
...+ .++++++.++++++.+|.+..+|.++++++..+|.+. +++.++++++..+|++...-.-.+.++..-.
T Consensus 654 ~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~------ 725 (987)
T PRK09782 654 WDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDDIDNQALITPLTPEQNQQRF------ 725 (987)
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCCCCchhhhhhhHHHHHHH------
Confidence 9885 8999999999999999999999999999999999984 8999999999999999877666666655432
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 196 FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 196 ~~~~~eileeELe~v~~AI~~dP~De 221 (526)
.++++.+.+.++...+|.-.
T Consensus 726 ------~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 726 ------NFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred ------HHHHHHHHHHHHhhcCccch
Confidence 26888888899888888744
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=3.4e-07 Score=80.98 Aligned_cols=125 Identities=10% Similarity=-0.047 Sum_probs=111.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 009766 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (526)
Q Consensus 47 lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeEL 126 (526)
.+.++|..+|++..+-..++..+...+ .+++++..++.++..+|.+..+|..++.++...+ .+++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~ 71 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQG------------RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK-EYEEAI 71 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH-HHHHHH
Confidence 578999999999988888888777765 4899999999999999999999999999998774 889999
Q ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 127 RLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 127 e~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
..++++++.+|.+...|.+++.+....+.+ ++++.+++++++.+|.+...+-.+..+.
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEP-ESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 999999999999999999999999999988 4899999999999999988776665543
No 30
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=1.5e-06 Score=84.39 Aligned_cols=168 Identities=11% Similarity=-0.074 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC
Q 009766 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (526)
Q Consensus 25 r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~y---tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N 101 (526)
..+...-......|+| ++|+..+.+++..+|++. .+|...+.++...+ .+++++..++.+++.+
T Consensus 34 ~~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~------------~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 34 EELYEEAKEALDSGDY-TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG------------DYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHC
Confidence 3445555566778999 799999999999999876 58888998888876 4899999999999999
Q ss_pred CCChH---HHHHHHHHHHhCC-------CChHHHHHHHHHHHHhCCCChhhhhHH-----------------HHHHHHhC
Q 009766 102 FKSYG---AWHHRKWILSKGH-------SSIDNELRLLDKFQKADSRNFHAWNYR-----------------RFVAASMN 154 (526)
Q Consensus 102 PKsy~---AW~HRrwvL~kl~-------~~~eeELe~~dkaLeiDprNyhAW~yR-----------------r~lL~~Lg 154 (526)
|++.. +|+.++.+..... +.++.+++.+++++..+|.+-.+|.-. +.+....|
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99987 7988888887541 257889999999999999998776322 22222336
Q ss_pred cChHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCC
Q 009766 155 RSEEDELKYTEDMICNNFSN---YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (526)
Q Consensus 155 ~~~eeELe~tdkaI~~nPsN---ySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP 218 (526)
.+ .+++..+.+++...|++ ..+|..++.++..++. +++++++++......|
T Consensus 181 ~~-~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~------------~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 181 AY-VAAINRFETVVENYPDTPATEEALARLVEAYLKLGL------------KDLAQDAAAVLGANYP 234 (235)
T ss_pred Ch-HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCC
Confidence 66 57999999999997764 5799999999998875 6888887777665555
No 31
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.72 E-value=4.2e-07 Score=88.18 Aligned_cols=125 Identities=9% Similarity=0.030 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH-HHhCcC-hHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA-ASMNRS-EEDELK 162 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL-~~Lg~~-~eeELe 162 (526)
...++.+..+..+++.+|++..+|...+.++...+ .+++++..+++++.++|+|..+|...+.++ ...|.. .+++.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g-~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN-DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 45688999999999999999999999999998885 899999999999999999999999999875 566664 368999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcc
Q 009766 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (526)
Q Consensus 163 ~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeS 222 (526)
.++++++.+|+|..+++..+......++ +++++.++.+++..+|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~------------~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD------------YAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999999999999998775 79999999999999998774
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.71 E-value=1.4e-06 Score=104.17 Aligned_cols=69 Identities=10% Similarity=-0.045 Sum_probs=57.0
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009766 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (526)
Q Consensus 34 ~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrw 113 (526)
....|++ ++|+..+.++|.++|++..++.....++...+ .+++++..+++++..+|.+..+++-+..
T Consensus 471 ~~~~g~~-~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G------------~~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 471 LENQGKW-AQAAELQRQRLALDPGSVWLTYRLAQDLRQAG------------QRSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467888 89999999999999999999999999988886 4788888888888888888877765544
Q ss_pred HH
Q 009766 114 IL 115 (526)
Q Consensus 114 vL 115 (526)
++
T Consensus 538 ~l 539 (1157)
T PRK11447 538 YL 539 (1157)
T ss_pred HH
Confidence 43
No 33
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=4.2e-07 Score=80.39 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=113.3
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc
Q 009766 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (526)
Q Consensus 92 ~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n 171 (526)
+.+++++..+|++..+-..+...+...+ .+++++..+++++..+|.|..+|...+.++...+.+. +++.++.+++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE-EAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 4578899999999988877888777764 8999999999999999999999999999999999884 7899999999999
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHc
Q 009766 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (526)
Q Consensus 172 PsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~ 232 (526)
|.+...|++++.++...++ +++++..+..++..+|++...+.+.+.+..
T Consensus 82 p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGE------------PESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999888764 699999999999999999998877766543
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.68 E-value=2.6e-06 Score=88.00 Aligned_cols=175 Identities=11% Similarity=-0.015 Sum_probs=135.5
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC----hHHHH
Q 009766 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS----YGAWH 109 (526)
Q Consensus 34 ~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs----y~AW~ 109 (526)
.+..|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++..++.++...+.. ..+|.
T Consensus 45 ~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 45 FLLNEQP-DKAIDLFIEMLKVDPETVELHLALGNLFRRRG------------EVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHhcCCh-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC------------cHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3567888 78999999999999999999999998888776 4789999999888754322 24566
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhH-----HHHHHHH
Q 009766 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA-----WHNRSLL 184 (526)
Q Consensus 110 HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySA-----W~yR~~L 184 (526)
..+.++... +.+++++.+++++++.+|.+..++.....+....+.+ +++++.+.++++.+|.+... |...+.+
T Consensus 112 ~La~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 112 ELGQDYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 666666666 4899999999999999999999999888888888888 47899999999988876431 1222222
Q ss_pred HHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcccc
Q 009766 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (526)
Q Consensus 185 L~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~ 235 (526)
+... +.+++++..+.+++..+|++..+|..+..++.+..
T Consensus 190 ~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 190 ALAR------------GDLDAARALLKKALAADPQCVRASILLGDLALAQG 228 (389)
T ss_pred HHhC------------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence 2222 23689999999999999998888877766665543
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.68 E-value=5.3e-06 Score=76.78 Aligned_cols=157 Identities=10% Similarity=-0.024 Sum_probs=128.8
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC--CCChHHHHHH
Q 009766 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN--FKSYGAWHHR 111 (526)
Q Consensus 34 ~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N--PKsy~AW~HR 111 (526)
....|++ ++|+..+.+++..+|++..+|+..+.++...+ .+++++..+++++... +....+|...
T Consensus 75 ~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 75 YQQLGEL-EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG------------KYEQAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred HHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3456888 89999999999999999999999999888776 4899999999999853 5677888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 009766 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (526)
Q Consensus 112 rwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~ 191 (526)
+.++...+ .++++..+++++++.+|.+..+|...+.+....+.+ +++++++.+++...|.+...|.....+....+.
T Consensus 142 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (234)
T TIGR02521 142 GLCALKAG-DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY-KDARAYLERYQQTYNQTAESLWLGIRIARALGD- 218 (234)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-
Confidence 88887774 899999999999999999999999999999888988 478999999999988888888766666655443
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhC
Q 009766 192 KVEGFVSKEKVLPDEYEFVHQAIFTD 217 (526)
Q Consensus 192 ~~~g~~~~~eileeELe~v~~AI~~d 217 (526)
.+++..+...+....
T Consensus 219 -----------~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 219 -----------VAAAQRYGAQLQKLF 233 (234)
T ss_pred -----------HHHHHHHHHHHHhhC
Confidence 355555555554443
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.66 E-value=3.5e-06 Score=87.10 Aligned_cols=126 Identities=14% Similarity=0.003 Sum_probs=67.3
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChH-----HH
Q 009766 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG-----AW 108 (526)
Q Consensus 34 ~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~-----AW 108 (526)
....|++ ++|+..+.+++..+|.+..+++....++...++ ++++++.++.++..+|.+.. .|
T Consensus 117 ~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 117 YLKAGLL-DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD------------WQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred HHHCCCH-HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch------------HHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3456777 788888888888888888888887777766653 44444455544444444321 11
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCC
Q 009766 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (526)
Q Consensus 109 ~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsN 174 (526)
.....++... +.+++++.+++++++.+|.+..+|...+.+....|.+. ++++.+.+++..+|.+
T Consensus 184 ~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 184 CELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYA-AAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHChhh
Confidence 1111122222 24444555555555544444444444444444444442 4444444444444443
No 37
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=1.2e-06 Score=99.79 Aligned_cols=134 Identities=6% Similarity=-0.090 Sum_probs=118.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr 112 (526)
...+.|.| +||+.+++.++.+.|++..|+..+..+|.+++ .+++++..++++|..+|+|+.+-+++.
T Consensus 95 i~~~~g~~-~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~------------~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 95 ALEAAHRS-DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ------------GIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHcCCc-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc------------cHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 33456888 89999999999999999999999999999986 489999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHH
Q 009766 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (526)
Q Consensus 113 wvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR 181 (526)
.++.+++ .+++++++|++++..+|.+..+|.-++.++...|..+ ++...+.++|...-.-.-.+..+
T Consensus 162 ~~l~~~g-~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~-~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIG-QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW-RARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHhc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhhCcchHHHHHH
Confidence 9999985 9999999999999999999999999999999999984 78889999998765544554443
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=7.5e-07 Score=86.41 Aligned_cols=125 Identities=11% Similarity=0.045 Sum_probs=112.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-H
Q 009766 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL-S 116 (526)
Q Consensus 38 geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL-~ 116 (526)
+++ ++++..+.++|..+|++..+|...+.++..++ .+++++..++++++.+|++..+|.....++ .
T Consensus 53 ~~~-~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g------------~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 53 QTP-EAQLQALQDKIRANPQNSEQWALLGEYYLWRN------------DYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred hhH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344 78899999999999999999999999998887 489999999999999999999999999876 4
Q ss_pred hCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh
Q 009766 117 KGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (526)
Q Consensus 117 kl~~-~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS 176 (526)
..+. .++++.+.++++++.+|+|..++...+......|.+. +++.+++++++.+|.+-+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~-~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA-QAIELWQKVLDLNSPRVN 179 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCcc
Confidence 4431 2589999999999999999999999999999999994 899999999999988764
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=1.5e-06 Score=99.10 Aligned_cols=153 Identities=11% Similarity=-0.028 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
.++|.-......-.|++..+-..-..+.+++++ +++++..++.++...|++..|+.++.-+|.+.. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-~ 135 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHR------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-G 135 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-c
Confidence 455555555566789999999999999999874 899999999999999999999999999999985 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhh
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~e 201 (526)
+++++..+++++..+|.|..+-..++-++..+|.++ ++++.|++++..+|.+..+|..++.+|+.++.
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~-~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~----------- 203 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE-QADACFERLSRQHPEFENGYVGWAQSLTRRGA----------- 203 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------
Confidence 999999999999999999999999999999999994 89999999999999999999999999999886
Q ss_pred hHHHHHHHHHHHHHhCCCC
Q 009766 202 VLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 202 ileeELe~v~~AI~~dP~D 220 (526)
.+++...|.+|+...-.-
T Consensus 204 -~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 204 -LWRARDVLQAGLDAIGDG 221 (694)
T ss_pred -HHHHHHHHHHHHHhhCcc
Confidence 456666666666554433
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=8.4e-07 Score=97.07 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=136.6
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHH--
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH-- 110 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~H-- 110 (526)
..+++|.. .+|.-+++.++..||+|..||.+-|.+-..+..+ ..++..+.+|++++|+|-.|-.-
T Consensus 294 ~lm~nG~L-~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E------------~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 294 NLMKNGDL-SEAALAFEAAVKQDPQHAEAWQKLGITQAENENE------------QNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHHhcCCc-hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch------------HHHHHHHHHHHhcCCccHHHHHHHH
Confidence 45577887 6888899999999999999999999887666531 23334444444444444433321
Q ss_pred ----------------HHHHHHh---------------------------------------------------------
Q 009766 111 ----------------RKWILSK--------------------------------------------------------- 117 (526)
Q Consensus 111 ----------------RrwvL~k--------------------------------------------------------- 117 (526)
+.|+..+
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 1232221
Q ss_pred -CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc
Q 009766 118 -GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (526)
Q Consensus 118 -l~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~ 196 (526)
+.+.|++++.+++.+|..+|.||..|+--+=.+..-.+. +++++.|.+++++-|.-.-+|++.+....+++.
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~------ 513 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS-EEAISAYNRALQLQPGYVRVRYNLGISCMNLGA------ 513 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh------
Confidence 002478999999999999999999999999888888887 589999999999999999999999999999885
Q ss_pred cchhhhHHHHHHHHHHHHHhCCC----C------cccHHHHHHHHccccC
Q 009766 197 VSKEKVLPDEYEFVHQAIFTDPD----D------QSGWFYHLWLLDQTVR 236 (526)
Q Consensus 197 ~~~~eileeELe~v~~AI~~dP~----D------eSaW~Y~r~LL~~~~~ 236 (526)
|++++..+..||.+.+. . +..|-++|-.|....+
T Consensus 514 ------ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 514 ------YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred ------HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 79999999999988876 2 3489999976665544
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.56 E-value=1.3e-06 Score=92.08 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=67.8
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 009766 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (526)
Q Consensus 31 ~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~H 110 (526)
.......|+| ++|+.++.++|.++|++..+|..|+.++..++ .+++++..+++++.++|++..+|+.
T Consensus 9 a~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g------------~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 9 AKEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANIKLG------------NFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3444456666 66777777777777777777777777666665 3666777777777777777777666
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 009766 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (526)
Q Consensus 111 RrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~ 148 (526)
++.++..++ .+++++..++++++++|.|..+......
T Consensus 76 lg~~~~~lg-~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 76 KGTACMKLE-EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666666653 6666777777777777766655444333
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.8e-06 Score=91.31 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
+.|...+..+|++||+...||---|.=...+. .-..++..+..|+.+||++|-||+.-+....-+. .
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK------------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-M 413 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK------------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-M 413 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc------------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-c
Confidence 79999999999999999999998887777665 3578999999999999999999999999998774 5
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
..=+|=++.++++..|.+--.|.--+-+..++++. ++++.|+.++|...--|-+|..+.+.+..+|..
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~-~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRL-EEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999998 489999999999888888999999999999876
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.3e-06 Score=92.44 Aligned_cols=169 Identities=11% Similarity=0.027 Sum_probs=141.6
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
.|++ .++...++++|.++|.+...+.+|..++..... -++=.++++.+..+||.|..++|||+.+..
T Consensus 339 ~g~~-~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~------------~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 339 KGDS-LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ------------SEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred cCCc-hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc------------cHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 3555 578889999999999999998888888776642 255568999999999999999999999888
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc
Q 009766 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (526)
Q Consensus 117 kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~ 196 (526)
-+. .++++++-+++++.++|.|..+.-+.++++-+.+... +-...+.+++++-|+-....++-+.+|.--
T Consensus 406 lL~-q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~-~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-------- 475 (606)
T KOG0547|consen 406 LLQ-QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA-ESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-------- 475 (606)
T ss_pred HHH-HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCchHHHHHHHHHhhH--------
Confidence 774 8999999999999999999999999999999888874 678889999999999999998888877632
Q ss_pred cchhhhHHHHHHHHHHHHHhCCC------CcccHHHHHHHHc
Q 009766 197 VSKEKVLPDEYEFVHQAIFTDPD------DQSGWFYHLWLLD 232 (526)
Q Consensus 197 ~~~~eileeELe~v~~AI~~dP~------DeSaW~Y~r~LL~ 232 (526)
..++.+++.|+.||.+.|. +......+..++.
T Consensus 476 ----qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 476 ----QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred ----HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 2369999999999999999 5555444444443
No 44
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.52 E-value=1.2e-07 Score=65.55 Aligned_cols=27 Identities=41% Similarity=0.895 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 90 ELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 90 EL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
||+++..+|..|||||++|+||+|+++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 444444444444444444444444443
No 45
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.4e-06 Score=89.27 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHH
Q 009766 17 SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVES 96 (526)
Q Consensus 17 ~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~ 96 (526)
.++++|++|.==+ ..+.++.| ++|++.|+++|.++|.+...+-.|.-++.+|+ .+..+++-|+.
T Consensus 77 ~~~~AE~LK~eGN---~~m~~~~Y-~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg------------~~~~AVkDce~ 140 (304)
T KOG0553|consen 77 DKALAESLKNEGN---KLMKNKDY-QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG------------EYEDAVKDCES 140 (304)
T ss_pred HHHHHHHHHHHHH---HHHHhhhH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc------------chHHHHHHHHH
Confidence 3445555543222 23455777 77888888888888888888888888877776 36777888888
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCc
Q 009766 97 ALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (526)
Q Consensus 97 aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~ 155 (526)
+|.+||....+|---+.++.-+ +.++++++.|.++|++||.|-..|.+..++=..++.
T Consensus 141 Al~iDp~yskay~RLG~A~~~~-gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLAL-GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHcc-CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888877777555555555 377777777888888888888777777777666654
No 46
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.49 E-value=1.5e-07 Score=65.14 Aligned_cols=31 Identities=39% Similarity=0.819 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHhC
Q 009766 124 NELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (526)
Q Consensus 124 eELe~~dkaLeiDprNyhAW~yRr~lL~~Lg 154 (526)
+||+++..+|..+|+||+||+||+|+++.++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l~ 31 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQLN 31 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHcc
Confidence 5999999999999999999999999999874
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.49 E-value=2e-06 Score=86.13 Aligned_cols=187 Identities=18% Similarity=0.150 Sum_probs=109.3
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC------------CCCch---------hhhhHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND------------SDPDS---------LKSILDEELRVVE 95 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~------------sdPe~---------~~~~~~eEL~~~e 95 (526)
.|.+ ++|+..+++++..++........-..++ ..+.... .+|.. ....+++...+++
T Consensus 57 ~~~~-~~A~~ay~~l~~~~~~~~~~~~~l~~l~-~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDY-DEAIEAYEKLLASDKANPQDYERLIQLL-QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccc-cccccccccccccccccccccccccccc-ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 4555 6777777777777777665544333331 1111111 01111 1245677777777
Q ss_pred HHHHhC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccC
Q 009766 96 SALRQN--FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (526)
Q Consensus 96 ~aL~~N--PKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs 173 (526)
.+.... +.+...|..++.+..+.+ ..+++++++.++++.+|.|..++..-.|++-..|... +..+.+..+....|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~-~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD-EAREALKRLLKAAPD 212 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH-HHHHHHHHHHHH-HT
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH-HHHHHHHHHHHHCcC
Confidence 766544 788999999999999885 8899999999999999999999999999987777763 456677777777799
Q ss_pred ChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccCCCC
Q 009766 174 NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDS 239 (526)
Q Consensus 174 NySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~~e~ 239 (526)
|...|...+.++..+++ +++++..+.+++..+|+|.........+|.+....+.
T Consensus 213 ~~~~~~~la~~~~~lg~------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGR------------YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp SCCHCHHHHHHHHHHT-------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHhccccc------------ccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999876 6999999999999999999999988888888766553
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.47 E-value=2.8e-06 Score=85.12 Aligned_cols=143 Identities=21% Similarity=0.148 Sum_probs=114.3
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETN--PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iN--Pd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~H 110 (526)
.....+.+ +++..+.+.+.... |.+...|..++.+..+.| ..++++++++++|..+|++..++..
T Consensus 119 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G------------~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 119 LYYRLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLG------------DPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp -HHHTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 33455666 78888888877655 788999999999999887 4799999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 111 RrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
-.|++...+ ..++..+.+....+..|.|...|..-+++...+|.+ ++++.++.+++..+|.|.....+-+.++...++
T Consensus 186 l~~~li~~~-~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 186 LAWLLIDMG-DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHCC-ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-ccccccccccccccccccccccccccccccccc
Confidence 999997764 677778888888888899999999999999999998 589999999999999999999999999988876
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.1e-05 Score=84.68 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=123.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHH
Q 009766 83 LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (526)
Q Consensus 83 ~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe 162 (526)
+.+..++++.++.++|+.||+...||.--+.-.-.++ +-..+++.|+++++++|++|.||.--|.....|+-+. =+|=
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK-Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~-YaLy 419 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK-NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF-YALY 419 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc-ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH-HHHH
Confidence 3577899999999999999999999987777666664 6678999999999999999999999999999988774 5899
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcccc
Q 009766 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (526)
Q Consensus 163 ~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~ 235 (526)
|+.+++..-|.|.-.|.-.|.+..++.+ +++++.|+++|+...-.+-++..+..-|..++.
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~------------~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNR------------LEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhcc------------HHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 699999999999988778888888888776643
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=6.1e-06 Score=89.22 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=153.6
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
...+-+++..+.+.++..+||.+..+++||+.+..-+. .+++++.-+++++.++|.+.-+....+.++
T Consensus 371 ~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~------------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 371 ADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ------------QYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH------------HHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 33444588999999999999999999999999887775 589999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccC------ChhHHHHHHHHHHHhh
Q 009766 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS------NYSAWHNRSLLLSNLL 189 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs------NySAW~yR~~LL~~L~ 189 (526)
-+.+ .+++....++.+++.-|+-..+.++-+-++..-+.++ ++++.++.+|+..|. |.-...|++.++-+..
T Consensus 439 Yr~~-k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd-~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk 516 (606)
T KOG0547|consen 439 YRQH-KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD-KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK 516 (606)
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH-HHHHHHHHHHhhccccccccccchhhhhhhHhhhchh
Confidence 8875 8899999999999999999999999999998888885 899999999999999 8888889988876643
Q ss_pred hhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccC
Q 009766 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (526)
Q Consensus 190 ~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~ 236 (526)
. -+.++++++.+||++||.-+-+.-=...+..|..+
T Consensus 517 ~-----------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 517 E-----------DINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred h-----------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 2 25899999999999999998888766666655444
No 51
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.1e-06 Score=90.09 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..|++++..++.+|.++|+|...+-.|..++.+++ .++.+++-|..+|.+||+..-||.--+.+.-.+|++. +++++|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~-~A~~ay 172 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE-EAIEAY 172 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH-HHHHHH
Confidence 78999999999999999999999999999999996 8999999999999999999999999999999999994 899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 165 EDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
.++|+++|.|.+.|.+..++=.++..
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999888776653
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.43 E-value=1.2e-05 Score=92.39 Aligned_cols=181 Identities=8% Similarity=-0.055 Sum_probs=139.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhhhcCCC----------CCCch----------------h
Q 009766 33 HNHHNHIYSKEAVELSTKLLETN---PELYTAWNYRKLAVQHKLTEND----------SDPDS----------------L 83 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iN---Pd~ytAWN~Rr~vL~~L~~~~~----------sdPe~----------------~ 83 (526)
.....|.+ ++|+..+++++..+ |++..+|. +.+...++..+. .+|.. .
T Consensus 246 ~Ll~~g~~-~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 246 ALLARDRY-KDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHhhhH-HHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34556777 78888888888875 55555553 333333332110 11110 1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 009766 84 KSILDEELRVVESALRQNFKSY---------------GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (526)
Q Consensus 84 ~~~~~eEL~~~e~aL~~NPKsy---------------~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~ 148 (526)
...+++++..++.++..+|+.. .+...+..++... +.++++++.+++++...|.|..+|..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2678999999999999988532 3455566666666 48999999999999999999999999999
Q ss_pred HHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHH
Q 009766 149 VAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (526)
Q Consensus 149 lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r 228 (526)
++...|.+ +++++.+++++..+|.|..++..++.+...++. ++++...+++++..+|+|..+-.+.+
T Consensus 402 l~~~~g~~-~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~------------~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 402 VLQARGWP-RAAENELKKAEVLEPRNINLEVEQAWTALDLQE------------WRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHhcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999998 589999999999999999999999998777654 79999999999999999998887666
Q ss_pred HH
Q 009766 229 WL 230 (526)
Q Consensus 229 ~L 230 (526)
-+
T Consensus 469 ~~ 470 (765)
T PRK10049 469 AR 470 (765)
T ss_pred HH
Confidence 55
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.43 E-value=1.1e-05 Score=92.95 Aligned_cols=165 Identities=10% Similarity=-0.018 Sum_probs=140.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh
Q 009766 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (526)
Q Consensus 26 ~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy 105 (526)
.+-+...-....|.+ ++|+..+.+++..+|....++.....++...+ .+.+++.++++++..+|.+.
T Consensus 17 ~~~d~~~ia~~~g~~-~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g------------~~~~A~~~~~~al~~~P~~~ 83 (765)
T PRK10049 17 QIADWLQIALWAGQD-AEVITVYNRYRVHMQLPARGYAAVAVAYRNLK------------QWQNSLTLWQKALSLEPQND 83 (765)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCH
Confidence 344556666678888 89999999999999999999999999988886 48999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
.+|.....++...+ .+++++..++++++.+|.|.. |...+.++...+.+ ++++..++++++.+|.|..++...+.++
T Consensus 84 ~a~~~la~~l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~-~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 84 DYQRGLILTLADAG-QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH-WDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99998888777764 899999999999999999999 99999999999988 5899999999999999999999888777
Q ss_pred HHhhhhhccCccchhhhHHHHHHHHHHHHHhCCC
Q 009766 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (526)
Q Consensus 186 ~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~ 219 (526)
...+. .+++++.++++.. +|+
T Consensus 161 ~~~~~------------~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 161 RNNRL------------SAPALGAIDDANL-TPA 181 (765)
T ss_pred HHCCC------------hHHHHHHHHhCCC-CHH
Confidence 65432 4566766665554 554
No 54
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.2e-05 Score=82.19 Aligned_cols=199 Identities=14% Similarity=0.042 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC--CC-------------
Q 009766 16 ASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS--DP------------- 80 (526)
Q Consensus 16 ~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~s--dP------------- 80 (526)
..+.++.+++.+-++... +..+ ..+++.|.+++.++ .+.+-.+.+.-+...++.+... ++
T Consensus 219 ~~k~~a~~ek~lgnaayk---kk~f-~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad 293 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYK---KKDF-ETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD 293 (539)
T ss_pred HHHHhhhHHHHHHHHHHH---hhhH-HHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH
Confidence 355566666666655443 4456 78999999999999 8888888888777766643210 00
Q ss_pred --------------------------------------ch--hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 009766 81 --------------------------------------DS--LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (526)
Q Consensus 81 --------------------------------------e~--~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~ 120 (526)
+. ..+.++++++-.+.....+|+-...--.++-...+. +
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~-g 372 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK-G 372 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc-c
Confidence 00 012333444444444444444433333333333333 4
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (526)
.|..++..|+++|+.+|.+.-+..+|.-++-.++.+. ..|..+++.|+.||++.-+|..++.++..+.+
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~-~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---------- 441 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP-EALKDAKKCIELDPNFIKAYLRKGAALRAMKE---------- 441 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----------
Confidence 7899999999999999999999999999999999984 79999999999999999999999999998865
Q ss_pred hhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 201 eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
|..+++.|..++..||++..+=--.+.++.+
T Consensus 442 --ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 442 --YDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred --HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 8999999999999999988655444444443
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=3.8e-05 Score=74.54 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=123.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLDK 131 (526)
Q Consensus 55 NPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy---~AW~HRrwvL~kl~~~~eeELe~~dk 131 (526)
++....++..++..+...+ .+++++..++.++..+|.++ .+|.+.+-++...+ .+++++..+++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~------------~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~ 95 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSG------------DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-DYAEAIAAADR 95 (235)
T ss_pred ccCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 3446677777777776665 58999999999999999986 68888888888874 89999999999
Q ss_pred HHHhCCCChh---hhhHHHHHHHHh--------CcChHHHHHHHHHHHHhccCChhHHHHHHH---HHHHhhhhh-cc-C
Q 009766 132 FQKADSRNFH---AWNYRRFVAASM--------NRSEEDELKYTEDMICNNFSNYSAWHNRSL---LLSNLLKRK-VE-G 195 (526)
Q Consensus 132 aLeiDprNyh---AW~yRr~lL~~L--------g~~~eeELe~tdkaI~~nPsNySAW~yR~~---LL~~L~~~~-~~-g 195 (526)
+++.+|++.. +|..++.+.... +.+ +++++.+++++..+|.+..+|.-... +...+.... .. .
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA-REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 788888887654 333 57899999999999999877633221 111111000 00 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCCCc---ccHHHHHHHHccccC
Q 009766 196 FVSKEKVLPDEYEFVHQAIFTDPDDQ---SGWFYHLWLLDQTVR 236 (526)
Q Consensus 196 ~~~~~eileeELe~v~~AI~~dP~De---SaW~Y~r~LL~~~~~ 236 (526)
.......+.+++..+.+++...|++. .+|+..+.++..+..
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 00112347999999999999988754 688888777776544
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.32 E-value=2e-05 Score=89.95 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHh
Q 009766 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (526)
Q Consensus 21 ~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~ 100 (526)
+..++.++++.-.....|++ ++|..++..+|+.+|.++.||..-+.+.+++| +.++.+.+.=.|...
T Consensus 136 ~~~l~~ll~eAN~lfarg~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG------------d~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG------------DIEKALNFWLLAAHL 202 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCccchhhHHHHHHHHHHcc------------cHHHHHHHHHHHHhc
Confidence 34467777775555566999 99999999999999999999999999999997 478999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhcc
Q 009766 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (526)
Q Consensus 101 NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nP 172 (526)
||+++.-|.+-.-...++ +.+.+|.-+|.++|+.+|.|..--.-|.-+++++|.. ..+++.+.+++..+|
T Consensus 203 ~p~d~e~W~~ladls~~~-~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQL-GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-KRAMETFLQLLQLDP 272 (895)
T ss_pred CCCChHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-HHHHHHHHHHHhhCC
Confidence 999999999777777777 4899999999999999999988878888999999988 489999999999998
No 57
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.29 E-value=7.8e-06 Score=86.11 Aligned_cols=102 Identities=7% Similarity=-0.089 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..+.+++.+++++|..+|.+..+|.+|+.++..++ .+++++..+++++.++|.+..+|..++.++..+|.+. +++..+
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~-eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ-TAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 46899999999999999999999999999999885 9999999999999999999999999999999999994 899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHh
Q 009766 165 EDMICNNFSNYSAWHNRSLLLSNL 188 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~~LL~~L 188 (526)
+++++.+|.|..+......+...+
T Consensus 94 ~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 94 EKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999998877766665554
No 58
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.26 E-value=4.1e-05 Score=88.95 Aligned_cols=177 Identities=12% Similarity=-0.002 Sum_probs=127.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHH
Q 009766 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA 107 (526)
Q Consensus 28 ~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~A 107 (526)
+.+.....++|+| .+|++.+.++|..+|++..+.+---.++... ....+++..+++++ +|.+...
T Consensus 38 y~~aii~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~dll~l~~~~------------G~~~~A~~~~eka~--~p~n~~~ 102 (822)
T PRK14574 38 YDSLIIRARAGDT-APVLDYLQEESKAGPLQSGQVDDWLQIAGWA------------GRDQEVIDVYERYQ--SSMNISS 102 (822)
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHhhCccchhhHHHHHHHHHHc------------CCcHHHHHHHHHhc--cCCCCCH
Confidence 3445566688999 6999999999999999964433111112222 24689999999999 5555544
Q ss_pred HHHH--HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 108 WHHR--KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 108 W~HR--rwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
...+ ..++... +.+++++++++++++.+|.|..++..-.-+....+.. +++++.+.+++..+|.+... -.+..+.
T Consensus 103 ~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 103 RGLASAARAYRNE-KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG-GVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 4445 3355555 4899999999999999999999987554555566666 48999999999999996654 3344443
Q ss_pred HHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccc
Q 009766 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (526)
Q Consensus 186 ~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~ 234 (526)
..... ..++++.+++++..+|++..+..-+...|.+.
T Consensus 180 ~~~~~------------~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 180 RATDR------------NYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred Hhcch------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 32221 35599999999999999999986666666554
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.24 E-value=8e-05 Score=74.41 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=121.2
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 009766 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (526)
Q Consensus 31 ~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~H 110 (526)
-+...++|++ ..|.+..+++|+.+|++|.+|..|..+.+.++. .+-+-+.+++++..+|++-.+-++
T Consensus 42 al~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge------------~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 42 ALGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE------------NDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------hhhHHHHHHHHHhcCCCccchhhh
Confidence 3455678899 899999999999999999999999999999973 467778999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 111 RKWILSKGHSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 111 RrwvL~kl~~~~eeELe~~dkaLe--iDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
-+|.|...+ .+++++..+++++. ..+.-.-.|-+.++|.-+.|... .+-+++.++++.+|++-.+---..-..
T Consensus 109 YG~FLC~qg-~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~-~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQG-RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD-QAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCC-ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch-hHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 999999885 89999999999987 34566679999999999999985 678899999999999988754444433
No 60
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=98.22 E-value=8.7e-07 Score=77.00 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=38.9
Q ss_pred ccccCCCCCCcccccCCCCCcceeEeeccccccccccceEEecccCcC-ccceeeeCCCCCCccceeEEEeccCC
Q 009766 259 RCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTN-KDLVWKPLSSCNSKAAQVWVTQLNLP 332 (526)
Q Consensus 259 ~~l~~~~~s~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~-~~~~w~p~~~~~~~~~~~w~~~l~~~ 332 (526)
.|+|+ +.|.++ +.++||+||.+ ++.+|...+++. +.+.||+++.+ .+.|+||+|+||..
T Consensus 4 rCl~V---------Sr~e~~--l~V~FSrPv~v---~~~~LlL~~D~~Pl~VeWRtp~gr-~r~s~vWlcdLP~~ 63 (102)
T PF07711_consen 4 RCLHV---------SRDEAC--LTVAFSRPVNV---GSETLLLFVDGSPLTVEWRTPDGR-NRPSHVWLCDLPAG 63 (102)
T ss_dssp EEEEE---------ETTTTE--EEEEEEEEE-S---TTB-EEEEESSSEE----B-TTSS---SEEEEEEE--GG
T ss_pred EEEEE---------ecccCe--EEEEecceeee---eeeeEEEEEcCCceEEEeeCCCCC-CCcCeEEEEeCCcc
Confidence 68888 788888 89999999987 455566666666 89999999965 48899999999973
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.09 E-value=0.00014 Score=74.46 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=121.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr 112 (526)
.....|++ ++++..+.++|..+|++..+|.. ...+..++... .........++.....+|....+.....
T Consensus 52 ~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 52 SAWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFS--------GMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccc--------cCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 34567888 89999999999999999999887 55544444210 1123333334444456677777777777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh----HHHHHHHHHHHh
Q 009766 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS----AWHNRSLLLSNL 188 (526)
Q Consensus 113 wvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS----AW~yR~~LL~~L 188 (526)
.++...+ .++++++.++++++++|++.+++...+.++...|.++ +.++++.+++...|.+.. .|.+.+.++...
T Consensus 122 ~~~~~~G-~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~-eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAG-QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK-EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcC-CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 7887774 8999999999999999999999999999999999984 799999999998875432 355566665555
Q ss_pred hhhhccCccchhhhHHHHHHHHHHHHHhCC
Q 009766 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (526)
Q Consensus 189 ~~~~~~g~~~~~eileeELe~v~~AI~~dP 218 (526)
++ +++++..+++++...|
T Consensus 200 G~------------~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GD------------YEAALAIYDTHIAPSA 217 (355)
T ss_pred CC------------HHHHHHHHHHHhcccc
Confidence 43 6899999999877666
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.04 E-value=0.00027 Score=74.24 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC
Q 009766 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (526)
Q Consensus 22 ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N 101 (526)
++--++=..|+++ |.| .+||--|-.++..||++|.|...|.-+...+++ -.-+|.-++++|...
T Consensus 39 ekhlElGk~lla~---~Q~-sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk------------sk~al~Dl~rVlelK 102 (504)
T KOG0624|consen 39 EKHLELGKELLAR---GQL-SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK------------SKAALQDLSRVLELK 102 (504)
T ss_pred HHHHHHHHHHHHh---hhH-HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC------------CccchhhHHHHHhcC
Confidence 3333445556654 667 689999999999999999999999999999985 245678889999999
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh-------------hhHHHHHHHHhCcC-hHHHHHHHHHH
Q 009766 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA-------------WNYRRFVAASMNRS-EEDELKYTEDM 167 (526)
Q Consensus 102 PKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhA-------------W~yRr~lL~~Lg~~-~eeELe~tdka 167 (526)
|..+.|=..|+.++-+.+ .++++..-++.+|..+|.|... |.-|..+..-.+.- -...+++++..
T Consensus 103 pDF~~ARiQRg~vllK~G-ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQG-ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred ccHHHHHHHhchhhhhcc-cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999999998874 8899999999999999966543 44444444433221 14688999999
Q ss_pred HHhccCChhHHHHHHHHHHHhhhhh-c---------------cCccchhhh------HHHHHHHHHHHHHhCCCCcccHH
Q 009766 168 ICNNFSNYSAWHNRSLLLSNLLKRK-V---------------EGFVSKEKV------LPDEYEFVHQAIFTDPDDQSGWF 225 (526)
Q Consensus 168 I~~nPsNySAW~yR~~LL~~L~~~~-~---------------~g~~~~~ei------leeELe~v~~AI~~dP~DeSaW~ 225 (526)
|++.|=+.|...+|..++-.-+.-. + .++--..++ ....|.-+..-+.+||++-.++-
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 9999999999999987765433210 0 000000011 36778888999999999999997
Q ss_pred HHHHHH
Q 009766 226 YHLWLL 231 (526)
Q Consensus 226 Y~r~LL 231 (526)
+++-|-
T Consensus 262 ~YKklk 267 (504)
T KOG0624|consen 262 FYKKLK 267 (504)
T ss_pred HHHHHH
Confidence 766554
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.04 E-value=7e-05 Score=74.81 Aligned_cols=126 Identities=16% Similarity=0.070 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
.++..+.+-++++|+.+|++|.+|.-|..+.++.+ ..+.+-+.|.++++++|+|-..-++=+|.+...|.+ +++..++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~-~eA~q~F 126 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP-EEAMQQF 126 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh-HHHHHHH
Confidence 46789999999999999999999999999999985 788899999999999999999999999999999988 4899999
Q ss_pred HHHHHh--ccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 165 EDMICN--NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 165 dkaI~~--nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
++++.. .+.-.-.|-+.+++-.+.+. ...+-+.++++|..||++..+-
T Consensus 127 ~~Al~~P~Y~~~s~t~eN~G~Cal~~gq------------~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 127 ERALADPAYGEPSDTLENLGLCALKAGQ------------FDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHHhCCCCCCcchhhhhhHHHHhhcCC------------chhHHHHHHHHHHhCcCCChHH
Confidence 999983 56667788888888776654 4777788999999999988665
No 64
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=6.2e-05 Score=59.49 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 009766 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (526)
Q Consensus 58 ~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDp 137 (526)
+..+|+.++.++...+ .+++++..+++++..+|++..+|..|+.+....+..++++++.+++++++||
T Consensus 2 ~a~~~~~~g~~~~~~~------------~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG------------DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556777777777665 4777777777777777777777777777777663246777777777777776
No 65
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00023 Score=77.87 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
+.|..++..|+++|.++|++...+.+|..++.++. .+.++|+.|++++++||.+.-+|..++-++..+..|+ ++++.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd-kAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD-KALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 57999999999999999999999999999999985 8899999999999999999999999999999999995 899999
Q ss_pred HHHHHhccCChhHH
Q 009766 165 EDMICNNFSNYSAW 178 (526)
Q Consensus 165 dkaI~~nPsNySAW 178 (526)
.++++.||+|..+-
T Consensus 450 ~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 450 QEALELDPSNAEAI 463 (539)
T ss_pred HHHHhcCchhHHHH
Confidence 99999999987553
No 66
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0023 Score=64.97 Aligned_cols=154 Identities=11% Similarity=0.123 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhcC-CCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC
Q 009766 26 VLQSQFLHNHHNH-IYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (526)
Q Consensus 26 ~l~~~~~~~~~~g-eyseEAL~lt~kaL~iNPd~---ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N 101 (526)
.+++++..=+..+ .-+++.+++...++..-+.- ...|..-..++..... .....-+..|++.+-...
T Consensus 12 ~l~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld---------~~~~~lAq~C~~~L~~~f 82 (289)
T KOG3060|consen 12 ELRDQMRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD---------TGRDDLAQKCINQLRDRF 82 (289)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHhC
Confidence 4445555434433 33578888888887766554 2455544443333321 124566677777777777
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHH
Q 009766 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (526)
Q Consensus 102 PKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR 181 (526)
|+|+-+=--....++.. +.+++++++++..++-||-|+..---|--++...|... +.|+-..+.++.-+.|..||++.
T Consensus 83 p~S~RV~~lkam~lEa~-~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEAT-GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-EAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred CCChhHHHHHHHHHHHh-hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHhcCcHHHHHHH
Confidence 88877777777777665 37778888888888888877766554444455667664 67777777778888888888888
Q ss_pred HHHHHHhhh
Q 009766 182 SLLLSNLLK 190 (526)
Q Consensus 182 ~~LL~~L~~ 190 (526)
.-+.-.++.
T Consensus 161 aeiY~~~~~ 169 (289)
T KOG3060|consen 161 AEIYLSEGD 169 (289)
T ss_pred HHHHHhHhH
Confidence 777666554
No 67
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0015 Score=66.41 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=142.2
Q ss_pred HHHHH-HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC
Q 009766 26 VLQSQ-FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (526)
Q Consensus 26 ~l~~~-~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs 104 (526)
.++.+ |-+....|.. .-|..++.++-...|+.+.+=...+..|+..+ .+++++++++.+|..||.+
T Consensus 53 ~l~EqV~IAAld~~~~-~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~------------~~~~A~e~y~~lL~ddpt~ 119 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRD-DLAQKCINQLRDRFPGSKRVGKLKAMLLEATG------------NYKEAIEYYESLLEDDPTD 119 (289)
T ss_pred HHHHHHHHHHHHhcch-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh------------chhhHHHHHHHHhccCcch
Confidence 34444 4577777777 78999999999999999999888898888886 4899999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 009766 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (526)
Q Consensus 105 y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~L 184 (526)
.-..- |+..+.+..+.--++++-++..++.-+.+..||++-.-+.-..+.+ +++.=|+++.+-++|.|+-..--.+-+
T Consensus 120 ~v~~K-RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 120 TVIRK-RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-EKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred hHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 87766 6655554333455899999999999999999999999998888888 478888999999999997655544555
Q ss_pred HHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHH
Q 009766 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (526)
Q Consensus 185 L~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~ 225 (526)
+...+. .+-++-+.+++.+++.++|.+--+|+
T Consensus 198 ~Yt~gg---------~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 198 LYTQGG---------AENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHhh---------HHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 555442 12358888999999999999888885
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.86 E-value=6.7e-05 Score=59.28 Aligned_cols=67 Identities=24% Similarity=0.223 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCC
Q 009766 140 FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (526)
Q Consensus 140 yhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP 218 (526)
..+|..++-+....+.+. +++++++++|+.+|+|..+|.+++.+...+++ .+.++++.+++++.++|
T Consensus 3 a~~~~~~g~~~~~~~~~~-~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-----------~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYE-EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-----------DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-----------HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHcCc
Confidence 345555555555555552 45555555555555555555555555555431 14555555555555555
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.84 E-value=0.00096 Score=68.28 Aligned_cols=157 Identities=11% Similarity=-0.053 Sum_probs=117.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 38 HIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (526)
Q Consensus 38 geyseEAL~lt~kaL~iNPd~y---tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwv 114 (526)
|.+ +++...+.+++..+|.+. .....+..+....+ .++++++++++++..+|++..+|.. ...
T Consensus 20 ~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g------------~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 20 GER-PAAAAKAAAAAQALAARATERERAHVEALSAWIAG------------DLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred CCc-chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 455 566777888888887664 45555555554443 5789999999999999999999885 333
Q ss_pred HHhCC---CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 009766 115 LSKGH---SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (526)
Q Consensus 115 L~kl~---~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~ 191 (526)
+...+ .......+.+......+|....+....++++...|.+. ++++.+.++++.+|.|..+++..+.++...++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~-~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~- 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD-RAEEAARRALELNPDDAWAVHAVAHVLEMQGR- 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-
Confidence 33221 22334444444444566777777777888998899884 79999999999999999999999999887765
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 192 ~~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
+++++.++.+++...|.+.
T Consensus 164 -----------~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 164 -----------FKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred -----------HHHHHHHHHhhhhccCCCc
Confidence 7999999999999988644
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00038 Score=53.70 Aligned_cols=88 Identities=23% Similarity=0.149 Sum_probs=61.8
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
..|++ ++|+..+..++..+|++..+|..++.++...+ .+++++++++.++..+|++..+|.....++
T Consensus 12 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 12 KLGDY-DEALEYYEKALELDPDNADAYYNLAAAYYKLG------------KYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHhcH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 35666 67777777777777777777777777766664 367777777777777777777777666666
Q ss_pred HhCCCChHHHHHHHHHHHHhCC
Q 009766 116 SKGHSSIDNELRLLDKFQKADS 137 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDp 137 (526)
...+ .++++...+.++++.+|
T Consensus 79 ~~~~-~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLG-KYEEALEAYEKALELDP 99 (100)
T ss_pred HHHH-hHHHHHHHHHHHHccCC
Confidence 5553 56677777777776665
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00047 Score=53.15 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 009766 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (526)
Q Consensus 107 AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~ 186 (526)
+|..++-++... +.+++++..+.++++..|.+..+|...+.++...+.+ +++++++.+++..+|.+..+|...+.++.
T Consensus 2 ~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL-GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-EEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 355555555554 3788888888888888888888888888888888777 47888888888888888888888887777
Q ss_pred HhhhhhccCccchhhhHHHHHHHHHHHHHhCCC
Q 009766 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (526)
Q Consensus 187 ~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~ 219 (526)
..+. ++++...+..++..+|.
T Consensus 80 ~~~~------------~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGK------------YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHh------------HHHHHHHHHHHHccCCC
Confidence 6654 57777888888877763
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.78 E-value=0.00037 Score=79.91 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHH
Q 009766 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (526)
Q Consensus 84 ~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~ 163 (526)
..+++++...+..+|+.+|+++.+|+.-+-|.++.+ +.++.+.+.-.+..++|+++.-|..-.-+...++.+ ..+.-|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i-~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI-NQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH-HHHHHH
Confidence 367899999999999999999999999999999885 888999999999999999999999999999999887 478889
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCC
Q 009766 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (526)
Q Consensus 164 tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP 218 (526)
++++|..+|.|.-.-.-|+.|++++|. +..+++.+.+++..+|
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~------------~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGD------------LKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCh------------HHHHHHHHHHHHhhCC
Confidence 999999999998888888999998875 5778888888888888
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00071 Score=57.51 Aligned_cols=100 Identities=13% Similarity=0.012 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC
Q 009766 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (526)
Q Consensus 28 ~~~~~~~~~~geyseEAL~lt~kaL~iNPd~---ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs 104 (526)
..........|+| ++|+..+..++..+|++ ..++...+.++...+ .+++++..++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 6 YDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG------------KYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc------------cHHHHHHHHHHHHHHCCCC
Confidence 3334444566778 78888888888888876 467777777777765 4788888888888887775
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh
Q 009766 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH 141 (526)
Q Consensus 105 ---y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyh 141 (526)
..+|...++++.+.+ .+++++.+++++++..|.+-.
T Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELG-DKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred CcccHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHCcCChh
Confidence 467777777777764 778888888888888887643
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.00028 Score=66.18 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=96.4
Q ss_pred HHHHHhC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHhCcChHHHHHHHHHHHH
Q 009766 95 ESALRQN--FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (526)
Q Consensus 95 e~aL~~N--PKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN---yhAW~yRr~lL~~Lg~~~eeELe~tdkaI~ 169 (526)
-.++..+ ++...+++.++.++... +.+++++.+++++++.+|.. ..+|...+.+...+|.+ +++++++.+++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 100 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQAD-GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH-DKALEYYHQALE 100 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Confidence 3444444 45556667777777766 48999999999999987653 46888899999999998 489999999999
Q ss_pred hccCChhHHHHHHHHHHHhhhhhc-c-CccchhhhHHHHHHHHHHHHHhCCCC
Q 009766 170 NNFSNYSAWHNRSLLLSNLLKRKV-E-GFVSKEKVLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 170 ~nPsNySAW~yR~~LL~~L~~~~~-~-g~~~~~eileeELe~v~~AI~~dP~D 220 (526)
.+|.+..++..++.++..++.... . ........++++++++.+++..+|++
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999887764211 1 12233445789999999999999998
No 75
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.00058 Score=64.02 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCcHHHH--HHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCC
Q 009766 46 ELSTKLLETNPELYTAW--NYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHS 120 (526)
Q Consensus 46 ~lt~kaL~iNPd~ytAW--N~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs---y~AW~HRrwvL~kl~~ 120 (526)
+.+..++..+++...++ ..++.++...+ .+++++.++++++..+|+. ..+|.+.+.++.+++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g- 86 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQADG------------EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG- 86 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-
Confidence 44556666666666655 44555555554 5899999999999988764 468988899998885
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcC-------------hHHHHHHHHHHHHhccCCh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-------------EEDELKYTEDMICNNFSNY 175 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~-------------~eeELe~tdkaI~~nPsNy 175 (526)
.+++++.++.+++..+|.+..+|...+.+...++.. .++.++++.+++..+|.|+
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 899999999999999999999999999999887752 2467888888888888885
No 76
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.70 E-value=0.00081 Score=63.74 Aligned_cols=101 Identities=11% Similarity=-0.005 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC
Q 009766 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (526)
Q Consensus 22 ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N 101 (526)
+.+-.+...-...++.|++ ++|..++..+..++|.+...|..-+.+.+.++ .+.+++.++..++..+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l-~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g------------~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEF-AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK------------HWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHhcC
Confidence 3444455555555666666 66777777777777777777777776666665 3667777777777777
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 009766 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (526)
Q Consensus 102 PKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiD 136 (526)
|+++.+-.|-+.++-.++ ..+.+.+.+..++...
T Consensus 100 ~ddp~~~~~ag~c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHHh
Confidence 777777777766666663 5666666666666554
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.66 E-value=0.002 Score=72.06 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh
Q 009766 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (526)
Q Consensus 26 ~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy 105 (526)
.++......+..+.| ...|++...+|...|+|...--.+|..|..+++ -+++..++...++.+++|+
T Consensus 9 ~lF~~~lk~yE~kQY-kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~------------~~ea~~~vr~glr~d~~S~ 75 (700)
T KOG1156|consen 9 ALFRRALKCYETKQY-KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK------------KEEAYELVRLGLRNDLKSH 75 (700)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHhCCccchhHHhccchhhcccc------------hHHHHHHHHHHhccCcccc
Confidence 455556677788999 889999999999999999999999999999984 5899999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHH
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~ 183 (526)
-+||--+.+...- ..|++++++|..++.++|.|-.-|.--..+-..|+.+. .-++.=...++.+|++.-.|.--..
T Consensus 76 vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 76 VCWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999877766654 48999999999999999999999999888888888773 4555556778889999988865433
No 78
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00078 Score=66.53 Aligned_cols=119 Identities=20% Similarity=0.200 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHH
Q 009766 12 EDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL 91 (526)
Q Consensus 12 e~~~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL 91 (526)
|+..+.++++..++.==+-+|. +|.| ++|..-|..+|.+.|...+ --|..+
T Consensus 86 eek~k~~~kad~lK~EGN~~F~---ngdy-eeA~skY~~Ale~cp~~~~--e~rsIl----------------------- 136 (271)
T KOG4234|consen 86 EEKDKAIEKADSLKKEGNELFK---NGDY-EEANSKYQEALESCPSTST--EERSIL----------------------- 136 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh---cccH-HHHHHHHHHHHHhCccccH--HHHHHH-----------------------
Confidence 4455556666666655555554 5889 8999999999999998876 222111
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc
Q 009766 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (526)
Q Consensus 92 ~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n 171 (526)
+.+|..++-++. .++.++.-|.++|+++|.+..|--.|..+...+..+ +++|+-+.+.++.+
T Consensus 137 ----------------y~Nraaa~iKl~-k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~-eealeDyKki~E~d 198 (271)
T KOG4234|consen 137 ----------------YSNRAAALIKLR-KWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY-EEALEDYKKILESD 198 (271)
T ss_pred ----------------HhhhHHHHHHhh-hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhC
Confidence 234555555553 567777777777777777777777777777777666 36777777777788
Q ss_pred cCChhH
Q 009766 172 FSNYSA 177 (526)
Q Consensus 172 PsNySA 177 (526)
|++..|
T Consensus 199 Ps~~ea 204 (271)
T KOG4234|consen 199 PSRREA 204 (271)
T ss_pred cchHHH
Confidence 877754
No 79
>PRK11906 transcriptional regulator; Provisional
Probab=97.61 E-value=0.0024 Score=69.51 Aligned_cols=158 Identities=7% Similarity=-0.005 Sum_probs=128.0
Q ss_pred HHHhCCCcH---HHH----HHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHhCC-
Q 009766 51 LLETNPELY---TAW----NYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL---RQNFKSYGAWHHRKWILSKGH- 119 (526)
Q Consensus 51 aL~iNPd~y---tAW----N~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL---~~NPKsy~AW~HRrwvL~kl~- 119 (526)
+...-|.+. .+| ..|+.....-. .| .....++.++.+++ ..+|....++-.+.|+-....
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~-----t~----~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDF-----TP----ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhcc-----CH----HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 455557777 888 34554332222 22 45789999999999 999999999888888765431
Q ss_pred -------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 009766 120 -------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (526)
Q Consensus 120 -------~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~ 192 (526)
....+++++.++++++||.|..|-...+.++...+.. ...+..+++++..||+...+|+++++++..-++
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-- 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-KVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-- 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--
Confidence 1235788999999999999999999899988888886 478888999999999999999999999887665
Q ss_pred ccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 009766 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (526)
Q Consensus 193 ~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~L 230 (526)
.+++++.++++++++|....+=.-+.|+
T Consensus 388 ----------~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 388 ----------IEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred ----------HHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 6999999999999999988887777776
No 80
>PRK11906 transcriptional regulator; Provisional
Probab=97.58 E-value=0.0024 Score=69.50 Aligned_cols=135 Identities=8% Similarity=-0.022 Sum_probs=112.4
Q ss_pred HHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 009766 42 KEAVELSTKLL---ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (526)
Q Consensus 42 eEAL~lt~kaL---~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl 118 (526)
++|+.++.+++ .++|++..++-.+.++-....-.-..++ .....+++.+.+++++++|.+..|-...+.++...
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~---~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSEL---ELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 68899999999 9999999998888877665521111222 34578999999999999999999988888877766
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHH
Q 009766 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (526)
Q Consensus 119 ~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR 181 (526)
. .++.++..+++++.++|+...+|.+++|+.-.-|+. +++++..+++++.+|.---|=.-+
T Consensus 352 ~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 352 G-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-EEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred c-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCchhhHHHHHH
Confidence 4 689999999999999999999999999999999998 589999999999999876553333
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.56 E-value=0.0091 Score=63.13 Aligned_cols=198 Identities=12% Similarity=0.092 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC------------CCC
Q 009766 13 DAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND------------SDP 80 (526)
Q Consensus 13 ~~~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~------------sdP 80 (526)
+...+.+.+++-+.++.++......|.+ .-++..++.+|++.|=+.....+|..++...+.-.. .|.
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~-~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDC-QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 3344556788888899999999999999 789999999999999999999999998887652000 011
Q ss_pred -ch---------hhhhHHHHHHHHHHHHHhCCCChHHHHHHH---HHHHhCC--------CChHHHHHHHHHHHHhCCCC
Q 009766 81 -DS---------LKSILDEELRVVESALRQNFKSYGAWHHRK---WILSKGH--------SSIDNELRLLDKFQKADSRN 139 (526)
Q Consensus 81 -e~---------~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr---wvL~kl~--------~~~eeELe~~dkaLeiDprN 139 (526)
+. .-...+..|.....||+.||..-.++-+-+ -+...+. ..|.+-++-.+++++.+|.-
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~ 302 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE 302 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc
Confidence 10 125678888999999999997655554433 3333321 34667888888888888863
Q ss_pred hhh--hhHHHHH--HHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHH
Q 009766 140 FHA--WNYRRFV--AASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (526)
Q Consensus 140 yhA--W~yRr~l--L~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~ 215 (526)
... =.+|..+ ...-+.+ -++|+-|.+.+..+|+|..+...|.-.+-. .++|+.+|.-|.+|.+
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~-~eAiqqC~evL~~d~~dv~~l~dRAeA~l~------------dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQF-GEAIQQCKEVLDIDPDDVQVLCDRAEAYLG------------DEMYDDAIHDYEKALE 369 (504)
T ss_pred cceeeeeeheeeecccccCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHh
Confidence 221 1112111 1111233 479999999999999999999999876432 3579999999999999
Q ss_pred hCCCCcccH
Q 009766 216 TDPDDQSGW 224 (526)
Q Consensus 216 ~dP~DeSaW 224 (526)
.+|+|..+=
T Consensus 370 ~n~sn~~~r 378 (504)
T KOG0624|consen 370 LNESNTRAR 378 (504)
T ss_pred cCcccHHHH
Confidence 999998654
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.56 E-value=0.0014 Score=74.48 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcCh-HHHHHHHH
Q 009766 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELKYTE 165 (526)
Q Consensus 87 ~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~-eeELe~td 165 (526)
-+++.-|...+-.++|-+...|+-|+-++... +.+.++.+.|..++.+||..+.+=.-.+-++...|..- .+.-.+..
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 46777899999999999999999998888765 37899999999999999999999888899998888652 12223778
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 166 DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 166 kaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
.+++.||.|..||+|.|.+++.+|. .+++.+||+.|+.+++.++
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd------------~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGD------------SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccc------------hHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999986 5899999999999888765
No 83
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0044 Score=71.98 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=146.2
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcC---CC---------------------------------CC
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTE---ND---------------------------------SD 79 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~---~~---------------------------------sd 79 (526)
.++.. .+|..+...+|.+|-++.++|-+-|.+....... .. .+
T Consensus 542 ~k~~~-~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNL-YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCc-HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 44555 7999999999999999999999998443332210 00 12
Q ss_pred CchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHH
Q 009766 80 PDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEED 159 (526)
Q Consensus 80 Pe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~ee 159 (526)
|+.....+.+++.+|.++|+.+|||-.|=+.-+.||...+ .+.+++..+.++.+--..++.+|-+-+.|+-..+.|- .
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~-~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR-L 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH-H
Confidence 3344577899999999999999999999999999998764 8999999999998877789999999999999999984 7
Q ss_pred HHHHHHHHHHhcc--CChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccc
Q 009766 160 ELKYTEDMICNNF--SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (526)
Q Consensus 160 ELe~tdkaI~~nP--sNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~ 234 (526)
+++.|...++... .++...+|.+-++...+ .|+++.+....|+...|.|.+.=|....++.++
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~------------~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAG------------KLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999988654 34455565555554433 489999999999999999999888887777553
No 84
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.006 Score=67.82 Aligned_cols=155 Identities=11% Similarity=0.012 Sum_probs=103.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--CC-----h
Q 009766 50 KLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--SS-----I 122 (526)
Q Consensus 50 kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~--~~-----~ 122 (526)
.+...-|.+..||-+=-+....+.+ .+ ...+.+++.+++++++.+|.+..+|..+.++..... .. +
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~---~~----~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l 400 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNS---GD----AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQL 400 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 3345677888888753333333321 11 245789999999999999999988888766543221 11 2
Q ss_pred HHHHHHHHHHHHh--CCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchh
Q 009766 123 DNELRLLDKFQKA--DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (526)
Q Consensus 123 eeELe~~dkaLei--DprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (526)
....+...+++.+ ++....++.=.+.+....+.+ +++...+++++..+|+ .-+|..++.++...|+
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~-~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~---------- 468 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKT-DEAYQAINKAIDLEMS-WLNYVLLGKVYELKGD---------- 468 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC----------
Confidence 2334444555453 565544433333333334555 5799999999999994 6789999988887765
Q ss_pred hhHHHHHHHHHHHHHhCCCCcccHHH
Q 009766 201 KVLPDEYEFVHQAIFTDPDDQSGWFY 226 (526)
Q Consensus 201 eileeELe~v~~AI~~dP~DeSaW~Y 226 (526)
.+++++.+.+|+.++|.++. |+.
T Consensus 469 --~~eA~~~~~~A~~L~P~~pt-~~~ 491 (517)
T PRK10153 469 --NRLAADAYSTAFNLRPGENT-LYW 491 (517)
T ss_pred --HHHHHHHHHHHHhcCCCCch-HHH
Confidence 69999999999999999984 533
No 85
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0024 Score=59.44 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHhCcChHH
Q 009766 85 SILDEELRVVESALRQNFKS--YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEED 159 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKs--y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNy---hAW~yRr~lL~~Lg~~~ee 159 (526)
..+....+.+..+++.+++. ..+|+..+.+.... +.+++++..+.+++.+.|..+ .+|...+.+....+.+. +
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~-e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE-GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT-K 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH-H
Confidence 34566666677776667666 67778777777766 489999999999999877643 48999999999999984 8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh-ccC-ccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK-VEG-FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 160 ELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~-~~g-~~~~~eileeELe~v~~AI~~dP~De 221 (526)
+++++.+++..+|.+..+|.+++.++..+++.. ..| +......+++++..+.+++..+|++.
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999999999998666321 011 11223346788899999999999754
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0013 Score=72.61 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..|+++++|++.+|..+|.+|..|+--+..|.... ..++++..|++++++.|....+|++-+...-.+|-| +++++++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y-kEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY-KEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH-HHHHHHH
Confidence 47999999999999999999999998899998774 789999999999999999999999999999999998 5899999
Q ss_pred HHHHHhccC----------ChhHHHHHHHHHHHhhh
Q 009766 165 EDMICNNFS----------NYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 165 dkaI~~nPs----------NySAW~yR~~LL~~L~~ 190 (526)
-.+|.+.+. |...|.+.+..|..+.+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999998776 23589998877776654
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00048 Score=53.95 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=54.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh
Q 009766 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (526)
Q Consensus 32 ~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy 105 (526)
......|+| ++|+..+.+++..+|++..+|...+.++...+ .+++++..++.++..+|.++
T Consensus 5 ~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQG------------RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCCC
Confidence 345678999 89999999999999999999999999999887 48999999999999999874
No 88
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0017 Score=69.60 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=134.4
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHH---------
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA--------- 107 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~A--------- 107 (526)
.|.| .+|...+-.+|.+++.+..+-..|+.++-... ....++..++++|+.+|..+.+
T Consensus 182 ~~~~-~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~------------~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 182 LGDY-DEAQSEAIDILKLDATNAEALYVRGLCLYYND------------NADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred cccc-hhHHHHHHHHHhcccchhHHHHhccccccccc------------chHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3666 79999999999999999999999999987775 3678888888988888876654
Q ss_pred ---HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC----hhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHH
Q 009766 108 ---WHHRKWILSKGHSSIDNELRLLDKFQKADSRN----FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHN 180 (526)
Q Consensus 108 ---W~HRrwvL~kl~~~~eeELe~~dkaLeiDprN----yhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~y 180 (526)
|--|+--+.+. +.+..+-++|..+|.+||.| .+....|+-+.-++++. .++|.-|+.++.+|++---|.+-
T Consensus 249 le~~k~~gN~~fk~-G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 249 LEVKKERGNDAFKN-GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-REAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred HHHHHhhhhhHhhc-cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-hhhhhhhhhhhhcCHHHHHHHHH
Confidence 44444333333 47899999999999999975 47788899999999998 58999999999999999999988
Q ss_pred HHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCC--CcccHHHHHHHHcc
Q 009766 181 RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD--DQSGWFYHLWLLDQ 233 (526)
Q Consensus 181 R~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~--DeSaW~Y~r~LL~~ 233 (526)
|+..-.-|+. ++++++.+.+++...-+ +...|---..-|.+
T Consensus 327 ra~c~l~le~------------~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 327 RANCHLALEK------------WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 8887666653 79999999999976544 55555443334433
No 89
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.37 E-value=0.0041 Score=72.64 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=106.7
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYR--KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~R--r~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr 112 (526)
...|.+ ++|+..+++++ +|++......+ ..+....+ .+.++++.++++++.+|++..++..-.
T Consensus 79 ~~~G~~-~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g------------dyd~Aiely~kaL~~dP~n~~~l~gLa 143 (822)
T PRK14574 79 GWAGRD-QEVIDVYERYQ--SSMNISSRGLASAARAYRNEK------------RWDQALALWQSSLKKDPTNPDLISGMI 143 (822)
T ss_pred HHcCCc-HHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 355777 79999999999 66665555555 33554444 588999999999999999999997553
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 113 wvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
.+.... ...+++++.++++...+|.+... -.+..+....+... ++++.++++++.+|.|..+..-+..++..++-
T Consensus 144 ~~y~~~-~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 144 MTQADA-GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHhhc-CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 444444 47889999999999999997776 66666666656664 59999999999999999998888888877764
No 90
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.0045 Score=68.80 Aligned_cols=128 Identities=9% Similarity=0.002 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--NFKSYGAWHHRKWILSKGH 119 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~--NPKsy~AW~HRrwvL~kl~ 119 (526)
.+|+.++++++.++|++..+|-.+..+....... .| .....+........+++.. +|....++.-...+....
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~---~~-~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~- 433 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ---QP-LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK- 433 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc---CC-ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc-
Confidence 6899999999999999999999887655443221 11 0012345566666666664 565555544333333322
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh
Q 009766 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS 176 (526)
+.++++...++++++++| +..+|...+.+....|++. ++++.+.+++..+|.+..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~-eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR-LAADAYSTAFNLRPGENT 488 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCch
Confidence 589999999999999999 6889999999999999994 899999999999999874
No 91
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.37 E-value=0.0057 Score=51.88 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHhCcChHH
Q 009766 86 ILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEED 159 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKs---y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN---yhAW~yRr~lL~~Lg~~~ee 159 (526)
.+.+++..++.++..+|++ ..++...+.++...+ .++.++..++.++..+|.+ ..+|...+.++..++.+. +
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~ 94 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE-K 94 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH-H
Confidence 5899999999999999987 568888888888774 8999999999999999886 457888899999999884 7
Q ss_pred HHHHHHHHHHhccCChh
Q 009766 160 ELKYTEDMICNNFSNYS 176 (526)
Q Consensus 160 ELe~tdkaI~~nPsNyS 176 (526)
.+.++++++..+|++-.
T Consensus 95 A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 95 AKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHCcCChh
Confidence 99999999999998754
No 92
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.0033 Score=58.49 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHh
Q 009766 43 EAVELSTKLLETNPEL--YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSK 117 (526)
Q Consensus 43 EAL~lt~kaL~iNPd~--ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy---~AW~HRrwvL~k 117 (526)
.+.+....++..++.. ..+|+..+.+....+ .+++++..+++++...|+.. .+|...+.++..
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEG------------EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4445555555566655 566666676666654 47888888888888776643 377777777777
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHh-------CcC------hHHHHHHHHHHHHhccCCh
Q 009766 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM-------NRS------EEDELKYTEDMICNNFSNY 175 (526)
Q Consensus 118 l~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~L-------g~~------~eeELe~tdkaI~~nPsNy 175 (526)
.+ .+++++.++.+++.++|.+..+|...+.+...+ |.+ ..+.++.+.+++..+|.++
T Consensus 85 ~g-~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 85 NG-EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 74 788888888888888888888888888888743 333 1355666677777777765
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0012 Score=70.66 Aligned_cols=184 Identities=15% Similarity=0.097 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------CCch-------
Q 009766 20 KAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS------- 82 (526)
Q Consensus 20 ~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~s----------dPe~------- 82 (526)
.+++.+..=++|. .+..| .+||..|+.+|.+.|++...|-.|.-++..+++.+.+ +|..
T Consensus 48 ~Ae~~k~~gn~~y---k~k~Y-~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 48 QAEEAKEEGNAFY---KQKTY-GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred HHHHHHhhcchHH---HHhhH-HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence 3444444444443 45678 7999999999999999999999999999999865331 0000
Q ss_pred ---------------------------------------------------------hhhhHHHHHHHHHHHHHhCCCCh
Q 009766 83 ---------------------------------------------------------LKSILDEELRVVESALRQNFKSY 105 (526)
Q Consensus 83 ---------------------------------------------------------~~~~~~eEL~~~e~aL~~NPKsy 105 (526)
..+++.++...+-.+++.+++|-
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~ 203 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA 203 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh
Confidence 01345566666777777778887
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh------------hhHHHHHHHHhCcChHHHHHHHHHHHHhccC
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA------------WNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhA------------W~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs 173 (526)
.+-.-|+-++.... ..+.++..++++|.+||....+ |.-|+--.-+-|.+ .++-++|+.+|.++|+
T Consensus 204 ~al~vrg~~~yy~~-~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y-~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 204 EALYVRGLCLYYND-NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY-RKAYECYTEALNIDPS 281 (486)
T ss_pred HHHHhccccccccc-chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch-hHHHHHHHHhhcCCcc
Confidence 77777777776553 6677888888888888765543 33333333233445 5788899999999999
Q ss_pred Chh----HHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 174 NYS----AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 174 NyS----AW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
|-- .+.+|..+.-.|++ +.++|.-++.|+.+||.-.
T Consensus 282 n~~~naklY~nra~v~~rLgr------------l~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGR------------LREAISDCNEALKIDSSYI 321 (486)
T ss_pred ccchhHHHHHHhHhhhcccCC------------chhhhhhhhhhhhcCHHHH
Confidence 753 35566666666654 6899999999999998743
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.34 E-value=0.022 Score=60.93 Aligned_cols=188 Identities=13% Similarity=-0.073 Sum_probs=133.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC-------------CCCchh--------hhhHHH-
Q 009766 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND-------------SDPDSL--------KSILDE- 89 (526)
Q Consensus 32 ~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~-------------sdPe~~--------~~~~~e- 89 (526)
.-....|++ ++|+...+.++..+|++..++..-+.+....++.+. .+++.. ...+.+
T Consensus 161 ~l~l~~~~~-~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 161 RILLAQNEL-HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334457888 899999999999999999998888887777664211 111111 011111
Q ss_pred ----HHHHHHHHHHhCC----CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh--hHHHHHHHHhCcChHH
Q 009766 90 ----ELRVVESALRQNF----KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW--NYRRFVAASMNRSEED 159 (526)
Q Consensus 90 ----EL~~~e~aL~~NP----Ksy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW--~yRr~lL~~Lg~~~ee 159 (526)
..+.+..+....| ++..++..-.-.+...+ .++++++.++++++.+|.|.... ..+....-..+.. ..
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-EK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-HH
Confidence 1236666677777 58888888777777664 89999999999999999987542 3333322222223 56
Q ss_pred HHHHHHHHHHhccCCh--hHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHH--HHHHhCCCCcccHHHHHHHHcccc
Q 009766 160 ELKYTEDMICNNFSNY--SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH--QAIFTDPDDQSGWFYHLWLLDQTV 235 (526)
Q Consensus 160 ELe~tdkaI~~nPsNy--SAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~--~AI~~dP~DeSaW~Y~r~LL~~~~ 235 (526)
.++.++++++.+|.|. ......++++.+.+. ++++.+++. .++..+|+++... ...-++.+..
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~------------~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g 384 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE------------FIEAADAFKNVAACKEQLDANDLA-MAADAFDQAG 384 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc------------HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcC
Confidence 8889999999999999 777788888877654 799999999 6888999998755 5566665543
No 95
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.0014 Score=51.34 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN 139 (526)
.+++++..++.++..+|++..+|...+.++...+ .+++++..++++++.+|.|
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCC
Confidence 5888999999999999999999999988888874 8888999999999988876
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.25 E-value=0.0097 Score=67.84 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 009766 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (526)
Q Consensus 38 geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~k 117 (526)
...++++..+..++=.+.|-....|+-||.++...+ ...++...+..++..||....+-.--+-++.+
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~------------~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG------------QLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH------------hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344578888999999999999999999998887765 58999999999999999999999999888887
Q ss_pred CC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCCh
Q 009766 118 GH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (526)
Q Consensus 118 l~-~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNy 175 (526)
.+ ......-.+...++++||.|..||.|-+-+++..|... ++-+|++.++...++|.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~-~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK-QAAECFQAALQLEESNP 788 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH-HHHHHHHHHHhhccCCC
Confidence 75 23444445888899999999999999999999999984 79999999999988874
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.03 Score=61.21 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=94.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHH
Q 009766 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (526)
Q Consensus 29 ~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW 108 (526)
+.-.+.+..|.+ ++|+..+..++...|+|...|-.+..++...++ ..++++.+.+++..+|.++..|
T Consensus 311 G~A~~~~~~~~~-d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk------------~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 311 GRALQTYLAGQY-DEALKLLQPLIAAQPDNPYYLELAGDILLEANK------------AKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHHhccc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCccHHH
Confidence 334455667788 688888888888889988888888888887763 6888888888888888888888
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcC
Q 009766 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (526)
Q Consensus 109 ~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~ 156 (526)
......+.+++ .+.+++..++..+..+|.|...|.+-.-....+|.-
T Consensus 378 ~~~a~all~~g-~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 378 LNLAQALLKGG-KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 88888888874 778888888888888888888888888888888765
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.19 E-value=0.0098 Score=69.85 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCC-ch-----hhhhHHHHHH
Q 009766 20 KAEKLRVLQSQFLHNH-HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP-DS-----LKSILDEELR 92 (526)
Q Consensus 20 ~~ek~r~l~~~~~~~~-~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdP-e~-----~~~~~~eEL~ 92 (526)
|...+-....++.... ..+++ +++++.++..+..+|+...+|.+.+.+..+.....++.. .. ....+ ....
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence 3334445555555555 77888 899999999999999999999999997666653211100 00 01223 5556
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhcc
Q 009766 93 VVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (526)
Q Consensus 93 ~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nP 172 (526)
++..++...+.+-.|-...+-++.+++ ..++.++.++++|+.||.|..|-++-+..+... .. +++++++.+++....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g-~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL-~KA~~m~~KAV~~~i 180 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLN-ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK-EKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHH
Confidence 666666668888789999999999985 899999999999999999999999999988877 33 466677666666433
Q ss_pred --------------------CChhHHHH-HHHHHHHhhhhhccCc-----c--chhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 173 --------------------SNYSAWHN-RSLLLSNLLKRKVEGF-----V--SKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 173 --------------------sNySAW~y-R~~LL~~L~~~~~~g~-----~--~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
.|..-..+ ...++..++.....++ . ...+-+++.++.++.+|..+|.|.-+-
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 32222111 1111111110000000 0 112335789999999999999987664
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.17 E-value=0.0055 Score=58.18 Aligned_cols=97 Identities=7% Similarity=-0.067 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 009766 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (526)
Q Consensus 107 AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~ 186 (526)
.-+-....+... +.++++..++..++.+||.|+..|..-+-+.+.++.+ +++++++.+++..+|+|+.+..|.+.++-
T Consensus 37 ~lY~~A~~ly~~-G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEV-KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-GEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 333344444444 3677777777777777777777777777777777777 36777777777777777777777777777
Q ss_pred HhhhhhccCccchhhhHHHHHHHHHHHHHhC
Q 009766 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (526)
Q Consensus 187 ~L~~~~~~g~~~~~eileeELe~v~~AI~~d 217 (526)
.+++ ...+.++++.+|...
T Consensus 115 ~lG~------------~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDN------------VCYAIKALKAVVRIC 133 (157)
T ss_pred HcCC------------HHHHHHHHHHHHHHh
Confidence 6664 466666666666544
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.17 E-value=0.021 Score=63.69 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=109.1
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
..|.+ ++|...+..+|..||+++.-...-..++.-... .. ......-+.+++......|++..+ |+..|
T Consensus 50 kLg~~-~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~---~~----~~~~~~~~~~y~~l~~~yp~s~~~---~rl~L 118 (517)
T PF12569_consen 50 KLGRK-EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ---LS----DEDVEKLLELYDELAEKYPRSDAP---RRLPL 118 (517)
T ss_pred HcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc---cc----cccHHHHHHHHHHHHHhCccccch---hHhhc
Confidence 35777 789999999999999988766655554422210 00 113566678888888888886553 33333
Q ss_pred HhCC--------------------CC--------hH--HHHHHHHHH-------HHh------------CCCCh--hhhh
Q 009766 116 SKGH--------------------SS--------ID--NELRLLDKF-------QKA------------DSRNF--HAWN 144 (526)
Q Consensus 116 ~kl~--------------------~~--------~e--eELe~~dka-------Lei------------DprNy--hAW~ 144 (526)
.... +. |. .-...+..+ ++. .|... .+|.
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~ 198 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY 198 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence 3221 00 10 001111111 111 12222 3447
Q ss_pred HHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 145 YRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 145 yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
+.......+|.+. ++|++++++|+..|.......-++-++.+.|. +.++.+.++.|-.+|+.|-
T Consensus 199 ~lAqhyd~~g~~~-~Al~~Id~aI~htPt~~ely~~KarilKh~G~------------~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 199 FLAQHYDYLGDYE-KALEYIDKAIEHTPTLVELYMTKARILKHAGD------------LKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHhCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhCChhhH
Confidence 7788888889985 89999999999999999999999999999986 6889999999999999886
No 101
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.015 Score=64.62 Aligned_cols=174 Identities=14% Similarity=0.053 Sum_probs=104.6
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
..|+. .+.+.+.-++....|+..--|..-+.-....+ .+.++.+++.++..+||+.-.||-.-+..+
T Consensus 290 el~~~-n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~------------k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 290 ELGKS-NKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG------------KYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred Hhccc-chHHHHHHHHHHhCCCCCcchhhHHHHHHHhc------------CcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 44555 56777777777888888888877777666665 357777777777777777777777766666
Q ss_pred HhCCCChHHHHHHHHHHHHhCC----------------------------------CChhhhhHHHHHHHHhCcChHHHH
Q 009766 116 SKGHSSIDNELRLLDKFQKADS----------------------------------RNFHAWNYRRFVAASMNRSEEDEL 161 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDp----------------------------------rNyhAW~yRr~lL~~Lg~~~eeEL 161 (526)
...+ .-+.++.+|.++.+.-| .+.-.-+.-+.|.-..+.+ .+++
T Consensus 357 a~e~-EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y-~~A~ 434 (611)
T KOG1173|consen 357 AGEG-EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEY-PEAL 434 (611)
T ss_pred hhcc-hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhh-HHHH
Confidence 5332 33445555555555444 4443333333333222223 2444
Q ss_pred HHHHHHHHh--ccCChh-----HHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccc
Q 009766 162 KYTEDMICN--NFSNYS-----AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (526)
Q Consensus 162 e~tdkaI~~--nPsNyS-----AW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~ 234 (526)
.++.+++.. ...|.+ -|.+.|.+..+++ .++++|.+++++|.+.|.|.+...=.+++...+
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~------------~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN------------KYEEAIDYYQKALLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh------------hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 444444421 222222 2455555555444 479999999999999999888776555555444
Q ss_pred cC
Q 009766 235 VR 236 (526)
Q Consensus 235 ~~ 236 (526)
.+
T Consensus 503 gn 504 (611)
T KOG1173|consen 503 GN 504 (611)
T ss_pred cC
Confidence 44
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0079 Score=66.61 Aligned_cols=171 Identities=15% Similarity=0.096 Sum_probs=132.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC---------------CCch------h-hhhHHHHHHHHH
Q 009766 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS---------------DPDS------L-KSILDEELRVVE 95 (526)
Q Consensus 38 geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~s---------------dPe~------~-~~~~~eEL~~~e 95 (526)
|.+ .+|=.++.++-.+||.+..||..-|..+.-.+-.+++ -|-. . ...+.-+=.|+.
T Consensus 326 ~k~-seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKY-SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCc-HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 778 7999999999999999999999998877655421110 1210 1 134555667888
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CC---CChhhhhHHHHHHHHhCcChHHHHHHHHHHH
Q 009766 96 SALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA----DS---RNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (526)
Q Consensus 96 ~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLei----Dp---rNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI 168 (526)
+++.++|.++-+-|.-+.+..+. ..|.+++.++.+++.. .+ +=-..|.+-|.+.++++.+ +++|.++.++|
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-EEAIDYYQKAL 482 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-HHHHHHHHHHH
Confidence 88888888887777766666554 3788999999998832 11 1224488889999999999 48999999999
Q ss_pred HhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCccc
Q 009766 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (526)
Q Consensus 169 ~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSa 223 (526)
...|.|.+...-.+++.-.+++ ++.+++.+++|+.++|+|+.+
T Consensus 483 ~l~~k~~~~~asig~iy~llgn------------ld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGN------------LDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcC------------hHHHHHHHHHHHhcCCccHHH
Confidence 9999999998888888777765 799999999999999999844
No 103
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.13 E-value=0.024 Score=64.02 Aligned_cols=201 Identities=16% Similarity=0.169 Sum_probs=128.3
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
.++. ++|+.+++.+|+..|++.-.|-..|.+..+++ .++.+-+.|..-++..|.+...|.--.-+=.
T Consensus 664 ld~~-eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~------------~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 664 LDNV-EEALRLLEEALKSFPDFHKLWLMLGQIEEQME------------NIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhH-HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH------------HHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 3455 89999999999999999999999999999886 3566667777777777777777754433333
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh----
Q 009766 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK---- 192 (526)
Q Consensus 117 kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~---- 192 (526)
+-+ .+-++-..++++.-.+|+|.-.|--..-+=.+.|... .+=....+++...|++--.|.---++-.+-.+..
T Consensus 731 k~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~-~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 731 KDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE-QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred Hhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 332 4556666777777777777777765555544555543 2333456777777777777766555544333210
Q ss_pred ----ccCc-c---------chhhhHHHHHHHHHHHHHhCCCCcccH--HHHHHHHccccCCCCCc---ccccCCCCCCc
Q 009766 193 ----VEGF-V---------SKEKVLPDEYEFVHQAIFTDPDDQSGW--FYHLWLLDQTVRVDSPQ---LVSSWPTPGSD 252 (526)
Q Consensus 193 ----~~g~-~---------~~~eileeELe~v~~AI~~dP~DeSaW--~Y~r~LL~~~~~~e~~~---~~~~w~~~~~~ 252 (526)
+... . =.+..++.+.+.+.+|+..+|++-.+| ||+-.+.......-... -+.|=|.||..
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcH
Confidence 0000 0 013457899999999999999877666 44444443322111111 24556777754
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.12 E-value=0.0076 Score=65.74 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=104.5
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHH
Q 009766 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (526)
Q Consensus 102 PKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR 181 (526)
|+...+|+-+.......+ .+++++..++.++...|+|...|..++-+.-..++. .++++..++++..+|...-.|...
T Consensus 303 ~~~~aa~YG~A~~~~~~~-~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~-~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAG-QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA-KEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhc-ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCccHHHHHH
Confidence 788899988776666664 788999999999999999999999999999888888 479999999999999999999999
Q ss_pred HHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccCC
Q 009766 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRV 237 (526)
Q Consensus 182 ~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~~ 237 (526)
+..|.++++ .++++..++..++-+|+|...|.|+.-....+.+.
T Consensus 381 a~all~~g~------------~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 381 AQALLKGGK------------PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHhcCC------------hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 998888775 57889999999999999999999887777665543
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0026 Score=52.61 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=48.4
Q ss_pred cCCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPE--LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd--~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwv 114 (526)
+|.| ++|+.++++++..+|. +..+|...+.++.+.+ .+.+++.++++ +..+|++..+....+-+
T Consensus 2 ~~~y-~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~------------~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNY-ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG------------KYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-H-HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT------------HHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC------------CHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 4555 5666666666666663 4555666666666654 36666666666 66666666666666666
Q ss_pred HHhCCCChHHHHHHHHH
Q 009766 115 LSKGHSSIDNELRLLDK 131 (526)
Q Consensus 115 L~kl~~~~eeELe~~dk 131 (526)
+.+++ .++++++.+++
T Consensus 68 ~~~l~-~y~eAi~~l~~ 83 (84)
T PF12895_consen 68 LLKLG-KYEEAIKALEK 83 (84)
T ss_dssp HHHTT--HHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHhc
Confidence 66663 66666666654
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.0077 Score=70.06 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
++||++|.++|..+|+|..|=|.-+.||-..+ .+.++++++.++..--.+++.+|-+-..|+-..+ .
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg------------~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~-q 695 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKG------------RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG-Q 695 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhcc------------CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH-H
Confidence 79999999999999999999999999998886 4899999999999888899999999999988774 8
Q ss_pred hHHHHHHHHHHHHhCC--CChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 122 IDNELRLLDKFQKADS--RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 122 ~eeELe~~dkaLeiDp--rNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
|..+++.|+.+++..- .+++.-+|-+-++-.-+.+ .+..++..+++...|+|.+.-++++.+++++..
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~-~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL-QEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 9999999999998543 3456666666665555655 578999999999999999999999999998874
No 107
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.0034 Score=49.95 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=56.1
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~ 109 (526)
.+++.| ++|+..++.+|.++|++..+|..++.++..++ .+.+++..++.++..+|.+..+=.
T Consensus 6 ~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g------------~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 6 LQQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLG------------RYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HhCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc------------cHHHHHHHHHHHHHHCCCcHHHHH
Confidence 456788 89999999999999999999999999999997 489999999999999998877543
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.00 E-value=0.0028 Score=68.89 Aligned_cols=70 Identities=13% Similarity=-0.003 Sum_probs=56.9
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHhCCCChHHHHHHHH
Q 009766 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA---WHHRKWILSKGHSSIDNELRLLD 130 (526)
Q Consensus 54 iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~A---W~HRrwvL~kl~~~~eeELe~~d 130 (526)
.+|+++.+|+.++.++..++ .|++++.+++++|.++|.+..+ |+++..++..++ .++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG------------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG------------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 67888888888888888876 4788888888888888888744 888888888874 7888888888
Q ss_pred HHHHhC
Q 009766 131 KFQKAD 136 (526)
Q Consensus 131 kaLeiD 136 (526)
+++++.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 888873
No 109
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.96 E-value=0.064 Score=57.29 Aligned_cols=171 Identities=14% Similarity=0.012 Sum_probs=113.2
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCC---------
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK--------- 103 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPK--------- 103 (526)
-....|++ ++|+..+++++..+|++..+......+....+ +++++++.+..+.+..+.
T Consensus 162 l~l~~g~~-~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g------------dw~~a~~~l~~l~k~~~~~~~~~~~l~ 228 (398)
T PRK10747 162 IQLARNEN-HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG------------AWSSLLDILPSMAKAHVGDEEHRAMLE 228 (398)
T ss_pred HHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34467888 78999999999999999888887777776665 344555444444444333
Q ss_pred ---------------------------------ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 009766 104 ---------------------------------SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (526)
Q Consensus 104 ---------------------------------sy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL 150 (526)
+..++..-.-.+... +..+++.+.+++.++..+ +.....-...+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~-g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~ 306 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC-DDHDTAQQIILDGLKRQY-DERLVLLIPRLK 306 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC-CHHHHHHHhhcc
Confidence 333333333333333 367788888888888433 333322222221
Q ss_pred HHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 009766 151 ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (526)
Q Consensus 151 ~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~L 230 (526)
.+.+ .+.++..+++++.+|+|.......+.+....+. +.++.+.+..++..+|++.. +....-+
T Consensus 307 --~~~~-~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~------------~~~A~~~le~al~~~P~~~~-~~~La~~ 370 (398)
T PRK10747 307 --TNNP-EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE------------WQEASLAFRAALKQRPDAYD-YAWLADA 370 (398)
T ss_pred --CCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence 1444 578999999999999999988888887766543 79999999999999999875 3344444
Q ss_pred Hccc
Q 009766 231 LDQT 234 (526)
Q Consensus 231 L~~~ 234 (526)
+.+.
T Consensus 371 ~~~~ 374 (398)
T PRK10747 371 LDRL 374 (398)
T ss_pred HHHc
Confidence 4443
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.94 E-value=0.013 Score=68.47 Aligned_cols=150 Identities=9% Similarity=0.055 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-
Q 009766 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH- 119 (526)
Q Consensus 41 seEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~- 119 (526)
...++..+-++|.++|....+|-+-|.+....- +...+.+|++++..++|..+.+|-.-.-..-...
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~------------Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD------------DMKRAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 567888888888888888888888887766553 3566777777777777777777765443332221
Q ss_pred ----------------------------------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHH
Q 009766 120 ----------------------------------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (526)
Q Consensus 120 ----------------------------------~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~td 165 (526)
.....++.-+..++..||++|.+|.--+-+...-|++. .++.-++
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~-~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS-HALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee-hHHHhhh
Confidence 13345666666677777777777777766666666663 5677677
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHH
Q 009766 166 DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (526)
Q Consensus 166 kaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~ 215 (526)
++...+|.+--+=+....+..-++. |+++++.+...|.
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd~Gk------------Ykeald~l~~ii~ 658 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECDNGK------------YKEALDALGLIIY 658 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHH
Confidence 7777777665555555555555443 4555555555443
No 111
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.016 Score=62.50 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=132.8
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC---------------CCch-------hhhhHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS---------------DPDS-------LKSILDEELRV 93 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~s---------------dPe~-------~~~~~~eEL~~ 93 (526)
-.|.+ .++...+++++.+||...++----+.+|..-++++.. .|=. -.+.++.+|.+
T Consensus 244 ~~Gdn-~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 244 YNGDY-FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhcCc-hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 35778 7899999999999999988888777777766653321 0100 13789999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh-----------------hHHHHHHHHhCc-
Q 009766 94 VESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW-----------------NYRRFVAASMNR- 155 (526)
Q Consensus 94 ~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW-----------------~yRr~lL~~Lg~- 155 (526)
.+++|..||.+-++..-++-+|..++ +.++++-.+..++.+-|..-.++ .--+|+++.++.
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~-R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALE-RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhcc-chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999885 66666666666666655332221 111233333321
Q ss_pred -----------------ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc-------------c--------Ccc
Q 009766 156 -----------------SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV-------------E--------GFV 197 (526)
Q Consensus 156 -----------------~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~-------------~--------g~~ 197 (526)
.-|++=.|+++.++++|.---|-.-..-|+..=+++++ + .+.
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM 481 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH
Confidence 12678889999999999887777766666554443321 0 011
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCcccHHHH
Q 009766 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (526)
Q Consensus 198 ~~~eileeELe~v~~AI~~dP~DeSaW~Y~ 227 (526)
...+.++++++.|..|+++||+|+.+---.
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 234568999999999999999999776443
No 112
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.018 Score=58.77 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=80.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ChHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---SYGAW 108 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~---ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPK---sy~AW 108 (526)
..+|+| ++|+..+..+|..+|+. ..++.+.+.++...+ .+++++..+..++..+|+ .+.+|
T Consensus 154 ~~~~~y-~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g------------~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 154 QDKSRQ-DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG------------KKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HhcCCH-HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345888 79999999999999998 479999999888776 489999999999987665 68888
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 009766 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (526)
Q Consensus 109 ~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhA 142 (526)
...+.++..++ .++++.+.++++++.+|.+..|
T Consensus 221 ~klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHH
Confidence 88888888774 8999999999999999988765
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.84 E-value=0.018 Score=67.65 Aligned_cols=159 Identities=13% Similarity=-0.024 Sum_probs=115.1
Q ss_pred HHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-----------
Q 009766 51 LLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH----------- 119 (526)
Q Consensus 51 aL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~----------- 119 (526)
+....|++..+|-.--.+....+ .+++++..|+.++..+|+...+|++.+.+..+..
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~------------~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l 90 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSEN------------LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLI 90 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhh
Confidence 34467888888877666654443 5899999999999999999999999999776543
Q ss_pred ------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 009766 120 ------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (526)
Q Consensus 120 ------~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~ 193 (526)
..+ ..++++...+...+.|-.|-...+.+++++|... +.++.++++++.||.|..+.++-+..+....-.++
T Consensus 91 ~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~-ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA 168 (906)
T PRK14720 91 DSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENK-KLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKA 168 (906)
T ss_pred hhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHH
Confidence 112 4555555555667777799999999999999994 89999999999999999999999998877611111
Q ss_pred cCc-------cchhhhHHHHHHHHHHHHHhCCCCccc
Q 009766 194 EGF-------VSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (526)
Q Consensus 194 ~g~-------~~~~eileeELe~v~~AI~~dP~DeSa 223 (526)
... --..+.|.+..+.-.+.++.+|+|-.-
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchH
Confidence 000 011223455556666666667766544
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.81 E-value=0.0041 Score=67.65 Aligned_cols=70 Identities=7% Similarity=0.018 Sum_probs=65.0
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh---hhhHHHHHHHHhCcChHHHHHHHHHHHHhc
Q 009766 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH---AWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (526)
Q Consensus 100 ~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyh---AW~yRr~lL~~Lg~~~eeELe~tdkaI~~n 171 (526)
.+|+++.+|++++..+..++ .|++++..|+++|+++|.+.. +|++++.++..+|..+ ++++++.++|+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d-EAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK-KAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc
Confidence 59999999999999999985 999999999999999999984 5999999999999984 8999999999974
No 115
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.80 E-value=0.045 Score=58.51 Aligned_cols=115 Identities=5% Similarity=-0.119 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh--hhhhHHHHHHHHhCcChHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAW--HHRKWILSKGHSSIDNELRLLDKFQKADSRNF--HAWNYRRFVAASMNRSEEDE 160 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW--~HRrwvL~kl~~~~eeELe~~dkaLeiDprNy--hAW~yRr~lL~~Lg~~~eeE 160 (526)
+.++++++.++.+++.+|++.... ..+....... ......++.++++++.+|.|. .....-+|+.-+.+.+ .++
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~-~~A 354 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF-IEA 354 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-HHH
Confidence 468999999999999999997653 3333333222 356789999999999999999 7788889999999998 489
Q ss_pred HHHHH--HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHH
Q 009766 161 LKYTE--DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (526)
Q Consensus 161 Le~td--kaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI 214 (526)
.++++ .+++.+|++..+. +.+.++..++. .+++.+++.+++
T Consensus 355 ~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~------------~~~A~~~~~~~l 397 (409)
T TIGR00540 355 ADAFKNVAACKEQLDANDLA-MAADAFDQAGD------------KAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC------------HHHHHHHHHHHH
Confidence 99999 6888999998765 77888888775 355556655544
No 116
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.79 E-value=0.013 Score=65.77 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
+.|..-|++.+.+|+..|+....-.-++..|..++ .-+++..++...+..|++..-||+=-+.+.+.-..|. +++.|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~-eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD-EAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH-HHHHHH
Confidence 57899999999999999999999999999999885 7889999999999999999999999998888878885 899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 165 EDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
..++...|.|-+.|.-.+.|-.+++.
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999888777765
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.77 E-value=0.02 Score=66.95 Aligned_cols=126 Identities=15% Similarity=0.079 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC----------CCCc--------------hhhhhHHHHHHHHHHH
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPD--------------SLKSILDEELRVVESA 97 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~----------sdPe--------------~~~~~~~eEL~~~e~a 97 (526)
.+|-++|.++..++|..+++|-+-....-....-+. .+|- .-.....+++.-+..+
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence 588999999999999999999887665544321000 0110 0125678999999999
Q ss_pred HHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHH
Q 009766 98 LRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (526)
Q Consensus 98 L~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~ 169 (526)
|+.+||+|.+|..-+-..-.. +++..+++.++++..++|..-.+=....-+...+|.+ ++.++.....|.
T Consensus 589 LR~dPkD~n~W~gLGeAY~~s-Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY-keald~l~~ii~ 658 (1238)
T KOG1127|consen 589 LRTDPKDYNLWLGLGEAYPES-GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY-KEALDALGLIIY 658 (1238)
T ss_pred hcCCchhHHHHHHHHHHHHhc-CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 999999999999998888877 4899999999999999998666655555555566777 356665555443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.75 E-value=0.019 Score=65.35 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------------CCchhhhhHHHHHHHHHHHHHhCCCChH
Q 009766 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------------DPDSLKSILDEELRVVESALRQNFKSYG 106 (526)
Q Consensus 43 EAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~s----------------dPe~~~~~~~eEL~~~e~aL~~NPKsy~ 106 (526)
.|=.+..+.|+ +|.....|-.+|-++....-++.+ .+-..++.|.+..+.++..+++||-..+
T Consensus 442 kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 442 KAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG 520 (777)
T ss_pred hHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence 34344444455 677777888888776655322110 1111247899999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 009766 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (526)
Q Consensus 107 AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~ 186 (526)
.|+.++.+--++. .++.+..+|.+++..+|.|+.+|++-.-..-.++.- .++.....++++.|-.|-..|-+-..+..
T Consensus 521 ~wf~~G~~ALqle-k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-~ra~~~l~EAlKcn~~~w~iWENymlvsv 598 (777)
T KOG1128|consen 521 TWFGLGCAALQLE-KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-KRAFRKLKEALKCNYQHWQIWENYMLVSV 598 (777)
T ss_pred HHHhccHHHHHHh-hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh-HHHHHHHHHHhhcCCCCCeeeechhhhhh
Confidence 9999998888874 889999999999999999999999998887777765 36888889999999888888888777776
Q ss_pred HhhhhhccCccchhhhHHHHHHHHHHHH
Q 009766 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (526)
Q Consensus 187 ~L~~~~~~g~~~~~eileeELe~v~~AI 214 (526)
.++. .++++..+++.+
T Consensus 599 dvge------------~eda~~A~~rll 614 (777)
T KOG1128|consen 599 DVGE------------FEDAIKAYHRLL 614 (777)
T ss_pred hccc------------HHHHHHHHHHHH
Confidence 6653 577777777755
No 119
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.72 E-value=0.0044 Score=48.55 Aligned_cols=63 Identities=24% Similarity=0.166 Sum_probs=56.3
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~H 110 (526)
+.+|+| ++|+..+.+++..+|++..++.....++...+ .++++...+++++..+|++..+|.-
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQG------------QYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-------------HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888 89999999999999999999999999999987 4899999999999999998666653
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.0058 Score=48.55 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhA 142 (526)
.+++++++++.++..+|.++.+|..++.++...+ .+.++++.++++++.+|.+-.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLG-RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCcHHH
Confidence 4667777777777777777777777777776664 6777777777777777755443
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.48 E-value=0.0085 Score=49.50 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHhCCC--ChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 121 SIDNELRLLDKFQKADSR--NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDpr--NyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
.+++++.+++++++.+|. +...|.+.+.++-..+.+ +++++.+++ +..++.|.......+.++..+++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-EEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-HHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 355555555555555553 234455555555555555 245555555 55555554444444555555443
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.38 E-value=0.63 Score=49.74 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=112.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYR-KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~R-r~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HR 111 (526)
...+.|++ +++...+.++...+|++..+-..+ ..+....+ .+++++..++.++..+|++..+....
T Consensus 127 aA~~~g~~-~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g------------~~~~Al~~l~~~~~~~P~~~~al~ll 193 (398)
T PRK10747 127 AAQQRGDE-ARANQHLERAAELADNDQLPVEITRVRIQLARN------------ENHAARHGVDKLLEVAPRHPEVLRLA 193 (398)
T ss_pred HHHHCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33577888 899999999999999987554433 34433333 58999999999999999999998888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhh---HHHH---HHHHhCcChHHHHH-HHHHHHHhccCChhHHHHHHHH
Q 009766 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWN---YRRF---VAASMNRSEEDELK-YTEDMICNNFSNYSAWHNRSLL 184 (526)
Q Consensus 112 rwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~---yRr~---lL~~Lg~~~eeELe-~tdkaI~~nPsNySAW~yR~~L 184 (526)
.-+..+.+ +++++++.+.++.+..+.+-.... .+.+ +-........+.+. .....-+..|.+..++.-....
T Consensus 194 ~~~~~~~g-dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 194 EQAYIRTG-AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 77777664 888888888888877665433222 1111 11111110011111 1111112223333333333333
Q ss_pred HHHhhhhhc----------cCc---------cchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccc
Q 009766 185 LSNLLKRKV----------EGF---------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (526)
Q Consensus 185 L~~L~~~~~----------~g~---------~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~ 234 (526)
+...+.... ... ....+-..+.++.+.+++..+|+|.......+.++.+.
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 322222100 000 00012257889999999999999998887777776553
No 123
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.16 Score=54.65 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=73.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 009766 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (526)
Q Consensus 110 HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~ 189 (526)
+-..+..++. .|..++..|+++|+++|+|.-|-+.|+-++..++.++ .+...+.++++.+|+|-.+=.....+-++..
T Consensus 262 NlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~-~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 262 NLAACYLKLK-EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYD-LARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHHhhh-hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 3455666664 7899999999999999999999999999999999994 7999999999999999877665555555543
Q ss_pred hhhccCccchhhhHHHHHHHHHHHHHh
Q 009766 190 KRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (526)
Q Consensus 190 ~~~~~g~~~~~eileeELe~v~~AI~~ 216 (526)
. ..+.|-+.|.+++..
T Consensus 340 ~-----------~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 340 E-----------YEEKEKKMYANMFAK 355 (397)
T ss_pred H-----------HHHHHHHHHHHHhhc
Confidence 2 245566666665543
No 124
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.24 E-value=0.029 Score=54.48 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcC---------hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS---------EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~---------~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~ 192 (526)
|+.+.+.++.....||.+..++++-+-+|..+... .+++++-++++|.+||..+.|....+..+..+....
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45677777777778888888887777777666321 367888889999999999999999999988887632
Q ss_pred ccCccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 193 ~~g~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
.. .....+.++++.++|++|...+|+|+..+
T Consensus 87 ~d-~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PD-TAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CC-hHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 21 12345678999999999999999999533
No 125
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.063 Score=57.67 Aligned_cols=83 Identities=18% Similarity=0.071 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHH
Q 009766 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (526)
Q Consensus 87 ~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdk 166 (526)
+.+++..|+++|..+|+|.-|-+.|+.++-.++ .|+.+...+.++++++|.|-.+=..-.-+.++...+.+.|=+.+.+
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554442 5555555555555555555444333333333333333344444444
Q ss_pred HHHh
Q 009766 167 MICN 170 (526)
Q Consensus 167 aI~~ 170 (526)
++..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 4443
No 126
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.029 Score=55.72 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHhCCCChh-----hhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 009766 121 SIDNELRLLDKFQKADSRNFH-----AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyh-----AW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~ 191 (526)
.|+++..-|..+|++.|.-+. ++.+|+-++-+++.+ +.+++.|.++|+++|.+.-|.--|..+..++..+
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~-e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW-ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH-HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 444444444444444443321 355667777777777 5899999999999999999999999999988653
No 127
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.04 E-value=0.87 Score=39.37 Aligned_cols=156 Identities=26% Similarity=0.217 Sum_probs=115.9
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ChHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKL-AVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---SYGAWHHRK 112 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~-vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPK---sy~AW~HRr 112 (526)
.+.+ .+++..+..++..++.....+.+... ++...+ .+.+++..+.+++..+|. .......+.
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 108 LGKY-EEALELLEKALALDPDPDLAEALLALGALYELG------------DYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HhhH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 3445 67888888888888888766766666 555554 478899999999887773 334344444
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 009766 113 WILSKGHSSIDNELRLLDKFQKADSR-NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (526)
Q Consensus 113 wvL~kl~~~~eeELe~~dkaLeiDpr-NyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~ 191 (526)
..+... ..++.++..+.+++...+. ...++...+......+.+ ..++..+..++...|.....+......+. ...
T Consensus 175 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 250 (291)
T COG0457 175 ALLEAL-GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY-EEALEYYEKALELDPDNAEALYNLALLLL-ELG- 250 (291)
T ss_pred hHHHHh-cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH-HHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcC-
Confidence 433333 3788999999999999998 688888888888877766 47888999999999986677777777666 221
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhCCC
Q 009766 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (526)
Q Consensus 192 ~~~g~~~~~eileeELe~v~~AI~~dP~ 219 (526)
.+.+....+.+++..+|.
T Consensus 251 ----------~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 ----------RYEEALEALEKALELDPD 268 (291)
T ss_pred ----------CHHHHHHHHHHHHHhCcc
Confidence 257888889999999987
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.93 E-value=0.1 Score=53.23 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHhCcChHHHHHHHHHHHHhccC---ChhHH
Q 009766 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFS---NYSAW 178 (526)
Q Consensus 105 y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNy---hAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs---NySAW 178 (526)
-..|+....-+....+.|++++..|+.+++.+|.+- .|+...+.+.-..+.+. +++..+.+++..+|. ...+|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~-~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD-DAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCCcchhHHH
Confidence 467777755442212479999999999999999884 68888888888888884 899999999988776 56788
Q ss_pred HHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCccc
Q 009766 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (526)
Q Consensus 179 ~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSa 223 (526)
...+.++..++. ++++...+.+++..+|+...+
T Consensus 221 ~klg~~~~~~g~------------~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGD------------TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHH
Confidence 888888776654 689999999999999998743
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.31 Score=54.76 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCC-
Q 009766 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK- 103 (526)
Q Consensus 25 r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPK- 103 (526)
..+...+-.--++|+| ++|+....++|.++|+..+|..++=-++.++. .|+++|. .++.|+.
T Consensus 13 ~~l~t~ln~~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~------------ky~~ALk----~ikk~~~~ 75 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALIQLD------------KYEDALK----LIKKNGAL 75 (652)
T ss_pred HHHHHHHHHhccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh------------HHHHHHH----HHHhcchh
Confidence 3455555555578999 89999999999999999999998887777775 4788884 4444542
Q ss_pred -ChHHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh
Q 009766 104 -SYGAW-HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (526)
Q Consensus 104 -sy~AW-~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS 176 (526)
.+... .+|..|..+++ ..++++..++ ..|+..--.-.-|+.++-++++|+ +.++-|..+++.+-.++.
T Consensus 76 ~~~~~~~fEKAYc~Yrln-k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yd-ealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLN-KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYD-EALDIYQHLAKNNSDDQD 145 (652)
T ss_pred hhcchhhHHHHHHHHHcc-cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCCchHH
Confidence 22222 67888888875 7788888877 233333345566777777788774 566666666665555544
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.83 E-value=0.094 Score=59.86 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=105.6
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
+++| +++.+..+..+.+||-....|..+|.+-.+++ .++.+.+.|..++..+|.+..+|++-.-..-
T Consensus 498 ~~~f-s~~~~hle~sl~~nplq~~~wf~~G~~ALqle------------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 498 NKDF-SEADKHLERSLEINPLQLGTWFGLGCAALQLE------------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred chhH-HHHHHHHHHHhhcCccchhHHHhccHHHHHHh------------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 5778 79999999999999999999999999988886 4799999999999999999999999887777
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHH
Q 009766 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (526)
Q Consensus 117 kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~ 169 (526)
+++ .-.++......+++.+-.|...|-+-.-+....|.+ +++++.+.+.+.
T Consensus 565 ~~~-~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~-eda~~A~~rll~ 615 (777)
T KOG1128|consen 565 RLK-KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF-EDAIKAYHRLLD 615 (777)
T ss_pred HHh-hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH-HHHHHHHHHHHH
Confidence 664 567899999999999999999999999999888888 479988887665
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.82 E-value=0.62 Score=47.63 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
+..+..-.+++..+|++..+-+--+...... .++.+++..+.++.+.+|++..+|+-++.++.+++ +
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~------------g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-r 149 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRN------------GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-R 149 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHh------------cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-C
Confidence 3455555666666666666665544444444 36899999999999999999999999999999985 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
++.+-..|.+++++.|.+...-++-+..+---|.. +++-.++..+...-+.|...=+++..++...++
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~-~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL-EDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH-HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 88999999999999999988888777666544555 456666666666666688888888888777665
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.82 E-value=0.031 Score=43.70 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW 143 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW 143 (526)
+.+++++..++.++..+|++..++.....++.+.+ .++++.+.+++++..+|.|...|
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-QYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCHHHHH
Confidence 36788888888888888888888888888888774 88888888888888888864443
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.81 E-value=0.23 Score=53.78 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
++|+++++++...+|+. +..-.+++.... .-.+++++..++|+.+|.++....--.-.+... ..
T Consensus 186 ~~ai~lle~L~~~~pev---~~~LA~v~l~~~------------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~ 249 (395)
T PF09295_consen 186 DEAIELLEKLRERDPEV---AVLLARVYLLMN------------EEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KK 249 (395)
T ss_pred HHHHHHHHHHHhcCCcH---HHHHHHHHHhcC------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CC
Confidence 56666666666666652 222222222221 124666666777776776666666554444333 25
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHH
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDEL 161 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeEL 161 (526)
++.+++...++.+..|.+|.+|.+-.-+.-.+|.++ ++|
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e-~AL 288 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE-NAL 288 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH-HHH
Confidence 666777777777777777777776666666666663 455
No 134
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.78 E-value=0.16 Score=55.55 Aligned_cols=180 Identities=13% Similarity=0.023 Sum_probs=134.5
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 009766 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (526)
Q Consensus 31 ~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~H 110 (526)
....+.+|.+ +.|++.....=..+.+...|--..-..|.-+.. ..++.++-.+.+.++.++-=|.+|-.+
T Consensus 426 a~~~lk~~d~-~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---------gk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 426 AGELLKNGDI-EGAIEILKVFEKKDNKTASAAANNLCALRFLQG---------GKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred HHHHHhccCH-HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---------ccchhHHHHHHHHHhcccccCHHHhhc
Confidence 3355566777 667666655555555555444333333333311 135778888899999988888888877
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 111 RrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
++-+.... +.+++++++|..+|.-|..--.|..+-+...+.+|..+ ++|+|+-++-.+--+|.....+...+...|..
T Consensus 496 kgn~~f~n-gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld-eald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 496 KGNIAFAN-GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD-EALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCceeeec-CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 77666544 58999999999999999998899888888888888884 79999888877777777777777777666543
Q ss_pred hhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccc
Q 009766 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (526)
Q Consensus 191 ~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~ 234 (526)
-.++|+.+.++..+-|+|+..-.-+.-|.++-
T Consensus 574 ------------~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 574 ------------PAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred ------------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 37899999999999999999998888888874
No 135
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.76 E-value=0.049 Score=52.97 Aligned_cols=73 Identities=14% Similarity=0.022 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
+.+.+.++.....||.+..+++.=+.+|..+.. ..+.......+++++.=++.+|.+||+...|-..-+-.+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAq--fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQ--FKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 567888899999999999999999999999953 1111223467899999999999999998887655555444
No 136
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.39 Score=52.63 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=103.6
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
+|.| +.|++.|..+|.-+..+..|...-+.....++ .++++|+|+-++-.+--.|.++-..-.-+..
T Consensus 503 ngd~-dka~~~ykeal~ndasc~ealfniglt~e~~~------------~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 503 NGDL-DKAAEFYKEALNNDASCTEALFNIGLTAEALG------------NLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred cCcH-HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc------------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4666 67888888888888888887777777666665 3667777666554444445555544444444
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCc---------------------------------ChHHHHHH
Q 009766 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR---------------------------------SEEDELKY 163 (526)
Q Consensus 117 kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~---------------------------------~~eeELe~ 163 (526)
-+. ....+++++.++-.+-|.+....+--+-+..+-|. ++++.+.|
T Consensus 570 ~le-d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLE-DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred Hhh-CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 332 44556666666655555554444333333332221 23677777
Q ss_pred HHHHHHhccCChhHHHHH-HHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 164 TEDMICNNFSNYSAWHNR-SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 164 tdkaI~~nPsNySAW~yR-~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
++++--+.|. .+-|.-. ..++.+-+ -|+.+++.|+..-+..|+|-.+--|+-.+.+.
T Consensus 649 ~ekaaliqp~-~~kwqlmiasc~rrsg------------nyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 649 FEKAALIQPN-QSKWQLMIASCFRRSG------------NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHhcCcc-HHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 7777666663 4556422 12222222 28999999999999999999888776655543
No 137
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.67 E-value=1.3 Score=38.36 Aligned_cols=170 Identities=24% Similarity=0.178 Sum_probs=124.9
Q ss_pred hcCCCcHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLE--TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~--iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrw 113 (526)
..+.+ .+++......+. ..+....++...+.+...++ .+.+++..+..++..++.+...+.+...
T Consensus 71 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 71 KLGRL-EEALELLEKALELELLPNLAEALLNLGLLLEALG------------KYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred HcccH-HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 44555 677777777776 78888888888887777765 4789999999999998888777777777
Q ss_pred -HHHhCCCChHHHHHHHHHHHHhCCC---ChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccC-ChhHHHHHHHHHHHh
Q 009766 114 -ILSKGHSSIDNELRLLDKFQKADSR---NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS-NYSAWHNRSLLLSNL 188 (526)
Q Consensus 114 -vL~kl~~~~eeELe~~dkaLeiDpr---NyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs-NySAW~yR~~LL~~L 188 (526)
++... +.++.++..+.+++..+|. .......+.......+.+ .+.+..+.+++...+. ...++...+..+...
T Consensus 138 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYEL-GDYEEALELYEKALELDPELNELAEALLALGALLEALGRY-EEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHc-CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH-HHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 66666 4899999999999887773 333333334434444555 5788999999999999 577777777776655
Q ss_pred hhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHc
Q 009766 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (526)
Q Consensus 189 ~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~ 232 (526)
+. +.+++..+..++...|.....+......+.
T Consensus 216 ~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 216 GK------------YEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred cc------------HHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 42 588999999999999985555554444444
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.44 Score=49.50 Aligned_cols=124 Identities=9% Similarity=-0.050 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhC--cChHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN--RSEEDELK 162 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg--~~~eeELe 162 (526)
...++-+.-.+.-|..||.+..-|.--+-+.-..+ .+..++..|.+++++.|+|...|---+-++-... ....+.-+
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~-~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALG-RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 34677778889999999999999998888887774 8999999999999999999999987776665553 23456777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 163 ~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
.+++++..||.|..+-+|.++-...-++ |.+++......+...|.|.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~------------~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGD------------YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccc------------HHHHHHHHHHHHhcCCCCC
Confidence 8899999999999999998887765443 7999999999999988776
No 139
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.47 E-value=0.69 Score=52.81 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=136.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC----------CCCCc-----------hhhhhHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN----------DSDPD-----------SLKSILDEEL 91 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~----------~sdPe-----------~~~~~~~eEL 91 (526)
++...|.- ..|..+...++..||.+-.+|...-.+......++ ...|. -.....++++
T Consensus 593 e~w~agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHH
Confidence 33445666 78999999999999999999987554443332100 01111 1236678999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc
Q 009766 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (526)
Q Consensus 92 ~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n 171 (526)
++++.+|+..|.....|.-.+.+..++. ..+.+-+.|..-++..|.....|---.-+=+.-+... .+=...+++.-.|
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~-rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV-RARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh-hHHHHHHHHHhcC
Confidence 9999999999999999999999998874 7788888899999999999999876666555555543 5666778888899
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 172 PsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
|.|.-.|--.--+=.+++. .+.+=..+.+|+...|++--.|.--.||-..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn------------~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGN------------KEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred CCcchhHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 9998888644333222221 3566678889999999999999888777654
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.46 Score=49.38 Aligned_cols=122 Identities=14% Similarity=0.007 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~-- 119 (526)
++.+.-.+.-|..||++..-|-.-+.+...++ .+..++..|.+++++.|+|...|---.-++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~------------~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALG------------RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc------------chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 45666778889999999999999999999987 4899999999999999999999988877776532
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh
Q 009766 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS 176 (526)
..-.+.-.++++++..||.|..+-.|-++-...-+.+ .+++.....++...|-|-.
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~-~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDY-AEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCCCc
Confidence 2345788899999999999999999998888888888 4799999999998887754
No 141
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.21 E-value=0.26 Score=52.28 Aligned_cols=167 Identities=9% Similarity=-0.009 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
+.||..+.+.|...|.+.|.--.-.++-+.++ .++++++++..+++.+|.|..+-.--.--... ...
T Consensus 273 ~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~------------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~ 339 (478)
T KOG1129|consen 273 ERALLVIGEGLDSFPFDVTYLLGQARIHEAME------------QQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNN 339 (478)
T ss_pred HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH------------hHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCC
Confidence 68999999999999999999998888888886 47999999999999999988764311111111 135
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc--cCC-hhHHHHHHHHHHHhhhhhccCccc
Q 009766 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN--FSN-YSAWHNRSLLLSNLLKRKVEGFVS 198 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n--PsN-ySAW~yR~~LL~~L~~~~~~g~~~ 198 (526)
.+-++.+|.++|.+-..|...+.+-+.+.-.-+.++ -.|-++.+++..- |.- ...|++.+++.-.++.
T Consensus 340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D-~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-------- 410 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID-LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-------- 410 (478)
T ss_pred hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh-hhHHHHHHHHhhccCcchhhhhhhccceeEEeccc--------
Confidence 788999999999999999999999888876666664 5777888888753 332 3579999998776654
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccc
Q 009766 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (526)
Q Consensus 199 ~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~ 234 (526)
+.-+-.|+.-++.-||+|..+.+.+.-|-.+.
T Consensus 411 ----~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 411 ----FNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred ----hHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 46677899999999999999998877666553
No 142
>PRK15331 chaperone protein SicA; Provisional
Probab=95.21 E-value=0.34 Score=46.52 Aligned_cols=82 Identities=9% Similarity=-0.070 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHH
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~td 165 (526)
.++++..++.-+...+|-|+.-|..-+-+.+.++ .|++++.+|..+..+++.|+..-.|-+.+.-.++.. ..+..++.
T Consensus 52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~-~~A~~~f~ 129 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA-AKARQCFE 129 (165)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH-HHHHHHHH
Confidence 3566666666666666666666666666666553 666666666666666666666666666666666665 35666666
Q ss_pred HHHH
Q 009766 166 DMIC 169 (526)
Q Consensus 166 kaI~ 169 (526)
.+|.
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 6655
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.76 E-value=0.57 Score=42.51 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccC---ChhHHH
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS---NYSAWH 179 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN---yhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs---NySAW~ 179 (526)
.+++++.|+...++ ..++++.+|.+++...... ..++-..+..+..+|+++ +++...++.+...|. +.....
T Consensus 2 ~~~~~~A~a~d~~G-~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d-eA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLG-REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD-EALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCccccHHHHH
Confidence 57888999999885 8999999999999975443 468888899999999995 799999999999898 777887
Q ss_pred HHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHH
Q 009766 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (526)
Q Consensus 180 yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~ 215 (526)
.....|.++++ .+++++.+..++-
T Consensus 80 f~Al~L~~~gr------------~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGR------------PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCC------------HHHHHHHHHHHHH
Confidence 77777887775 4666666655553
No 144
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.51 E-value=2.4 Score=43.43 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 009766 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (526)
Q Consensus 43 EAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~ 122 (526)
.++...-..-..||++..+ ......+...+. -++.+....+++..+|++...-+--+-..... +++
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~-g~~ 116 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGD------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN-GNF 116 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhccc------------ccchHHHHhhhhccCcccHHHHHHHHHHHHHh-cch
Confidence 4778888889999999999 545555544442 24566777888888999977664433333333 589
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhh
Q 009766 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKV 202 (526)
Q Consensus 123 eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~ei 202 (526)
.+++..+.++...+|.|-.+|+-++-++.++|+.+ ++=..+.++++..|.+.++-++.+..+--=++
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~-~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd------------ 183 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD-EARRAYRQALELAPNEPSIANNLGMSLLLRGD------------ 183 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh-HHHHHHHHHHHhccCCchhhhhHHHHHHHcCC------------
Confidence 99999999999999999999999999999999986 45556799999999999999998887654332
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 203 LPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 203 leeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
++.+-.++..+...-+.|...=..+.++.+.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 5677777777776667677776666666654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.51 E-value=2.5 Score=38.46 Aligned_cols=127 Identities=17% Similarity=0.036 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc-H--HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 009766 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL-Y--TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (526)
Q Consensus 26 ~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~-y--tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NP 102 (526)
.+...+......+.. ..+-..++.++..+|+. | .+......+....+ .++++...++.++...|
T Consensus 13 ~~y~~~~~~~~~~~~-~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g------------~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 13 ALYEQALQALQAGDP-AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG------------DYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhhCC
Confidence 334444444467777 66777899999999999 3 34444444444443 58999999999999876
Q ss_pred CC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHH
Q 009766 103 KS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (526)
Q Consensus 103 Ks---y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI 168 (526)
.. ..++.....++-.. +.+++++..++.. .-.+-...++..++-++...|.++ ++...+.++|
T Consensus 80 d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~-~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQ-GQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYD-EARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHH-HHHHHHHHhC
Confidence 55 33555445555555 4899999998763 444445567788888888889884 7888887764
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.07 E-value=0.89 Score=49.30 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..+++++.+++++.+.+|. ++..-.-++... ..-.++++.++++++.+|.++.......-.+-..+.+ +.+++..
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-ELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 5689999999999999986 333333333333 2456899999999999999999988887777777777 5899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHH
Q 009766 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH 211 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~ 211 (526)
.++++..|++..+|++...+.-.++. +++||-..+
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d------------~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGD------------FENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCC------------HHHHHHHHh
Confidence 99999999999999999999888765 677774443
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.02 E-value=0.11 Score=35.58 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN 139 (526)
.+|.+++.+...++ .+++++.+|+++++++|.|
T Consensus 2 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG-DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHCcCC
Confidence 46777777777774 7778888888888887764
No 148
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.80 E-value=0.056 Score=38.14 Aligned_cols=28 Identities=25% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 163 YTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 163 ~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
+++++|+.+|+|..+|++.+.++...++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 3678899999999999999999887765
No 149
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.66 E-value=0.09 Score=57.57 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..++.++.++.++|.++|.+...|..|....-+. ..+..++.-+.++++.||...-|...|+-++..++.+ .+++..+
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~-e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~-~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV-ESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF-KKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheee-chhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH-HHHHHHH
Confidence 4688888888888888888888888887555555 3778888888888888888888888888888888777 3678778
Q ss_pred HHHHHhccCChhH
Q 009766 165 EDMICNNFSNYSA 177 (526)
Q Consensus 165 dkaI~~nPsNySA 177 (526)
.++....|++..+
T Consensus 96 ~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 96 EKVKKLAPNDPDA 108 (476)
T ss_pred HHhhhcCcCcHHH
Confidence 8888888887654
No 150
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=2.3 Score=46.50 Aligned_cols=175 Identities=14% Similarity=0.033 Sum_probs=120.9
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhh-cCCC------------CCCc------------hhhhhHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKL-TEND------------SDPD------------SLKSILDEE 90 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~-~~~~------------sdPe------------~~~~~~~eE 90 (526)
.-+.-+.+.-.....++...|.+.|.|.+|+-.-+-.. .... .-|+ ...+.+.++
T Consensus 172 ~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 172 ELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred HHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 33333344555667778888888888888765333322 1000 0121 123667888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHh
Q 009766 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (526)
Q Consensus 91 L~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~ 170 (526)
...++++...||-+..+----..+|.+-+ .+++-=.+....+.++.---.-|.=-+.++-.-+++ +.+|.+..++|..
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~-~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF-ERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH-HHHHHHHHHHhcc
Confidence 89999999999999888888888887663 677777777777777754444555444444333444 4788899999999
Q ss_pred ccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 171 NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 171 nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
+|+|..|..-+|.+|..+++ .++++-.|..|+.+.|-+-.++
T Consensus 330 ~~r~~~alilKG~lL~~~~R------------~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALER------------HTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred CcccchHHHhccHHHHhccc------------hHHHHHHHHHHHhcchhhHHHH
Confidence 99999999999998888875 4777788888888888765544
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.65 E-value=2.8 Score=40.64 Aligned_cols=108 Identities=18% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 009766 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (526)
Q Consensus 26 ~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~y---tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NP 102 (526)
.+...-.....+|+| .+|+..++.++...|... .|+...+.+....+ .+.+++..++..+..+|
T Consensus 7 ~lY~~a~~~~~~g~y-~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~------------~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDY-EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG------------DYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCC
Confidence 455556667788999 899999999999988764 55555555555554 58999999999999999
Q ss_pred CChH---HHHHHHHHHHhCC----------CChHHHHHHHHHHHHhCCCChhhhhHH
Q 009766 103 KSYG---AWHHRKWILSKGH----------SSIDNELRLLDKFQKADSRNFHAWNYR 146 (526)
Q Consensus 103 Ksy~---AW~HRrwvL~kl~----------~~~eeELe~~dkaLeiDprNyhAW~yR 146 (526)
++.. |.+.++.+..... ....+++..+..+++..|.+-.+-.=+
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~ 130 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK 130 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH
Confidence 8764 6666666543221 113467777777777777766664433
No 152
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.61 E-value=0.077 Score=37.42 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=14.1
Q ss_pred HHHHHHhCCCChhhhhHHHHHHHHhCcC
Q 009766 129 LDKFQKADSRNFHAWNYRRFVAASMNRS 156 (526)
Q Consensus 129 ~dkaLeiDprNyhAW~yRr~lL~~Lg~~ 156 (526)
|.++|+++|.|..+|+..++++...|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 4445555555555555555555544443
No 153
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.49 E-value=0.85 Score=46.16 Aligned_cols=92 Identities=12% Similarity=-0.012 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHH
Q 009766 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (526)
Q Consensus 88 ~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdka 167 (526)
.=+.--+.++|.++||-+.++++-+.-+... +.|+.+++.++..+++||.+..|--+|+..+---|++. -+.+-+.+.
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~-LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK-LAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-ccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH-hhHHHHHHH
Confidence 3344567889999999999999999999877 48999999999999999999999999998877777773 355555666
Q ss_pred HHhccCCh--hHHHHH
Q 009766 168 ICNNFSNY--SAWHNR 181 (526)
Q Consensus 168 I~~nPsNy--SAW~yR 181 (526)
-..||+|. +.|-|.
T Consensus 160 YQ~D~~DPfR~LWLYl 175 (297)
T COG4785 160 YQDDPNDPFRSLWLYL 175 (297)
T ss_pred HhcCCCChHHHHHHHH
Confidence 67789886 555553
No 154
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.30 E-value=1.4 Score=41.54 Aligned_cols=100 Identities=20% Similarity=0.120 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC-CC
Q 009766 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN-FK 103 (526)
Q Consensus 25 r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N-PK 103 (526)
+.|.-.-.+.-..|+. ++||+.+.++|.+.|+..+++|.|...+.-.+ ..+++|+-++++++.- |+
T Consensus 44 ~~LEl~~valaE~g~L-d~AlE~F~qal~l~P~raSayNNRAQa~RLq~------------~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 44 RELELKAIALAEAGDL-DGALELFGQALCLAPERASAYNNRAQALRLQG------------DDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHhcccchHhhccHHHHHHHcC------------ChHHHHHHHHHHHHhcCcc
Confidence 3444333445578888 78999999999999999999999998876554 3588888888888753 43
Q ss_pred C---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 009766 104 S---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (526)
Q Consensus 104 s---y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDpr 138 (526)
- .+++..|+.+....+ +.+.+-.-++.+.++-.+
T Consensus 111 trtacqa~vQRg~lyRl~g-~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLG-NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHHHHHHHHHHHhC-chHHHHHhHHHHHHhCCH
Confidence 2 466777777776653 667777777777666544
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.10 E-value=0.25 Score=33.29 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN 139 (526)
.+|++.+.++...+ .+++++++++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG-NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCcCC
Confidence 46777888887774 7888888888888888875
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.08 E-value=0.2 Score=50.46 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=76.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 111 RrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
|+-+...++ .+.-+---+..++.+.|+-..+++|-+.-+..-+.++ .+++.++..++.||++..|.-+|+..+.--++
T Consensus 71 RGvlYDSlG-L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd-aa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 71 RGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-AAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hcchhhhhh-HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch-HHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence 333333332 3344445677899999999999999999998889986 79999999999999999999999988776655
Q ss_pred hhccCccchhhhHHHHHHHHHHHHHhCCCCc--ccHHH
Q 009766 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ--SGWFY 226 (526)
Q Consensus 191 ~~~~g~~~~~eileeELe~v~~AI~~dP~De--SaW~Y 226 (526)
+.-+.+-+.+.-..||+|+ +.|.|
T Consensus 149 ------------~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 149 ------------YKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred ------------hHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 3334444444455677776 66666
No 157
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.02 E-value=0.16 Score=34.66 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCC
Q 009766 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~D 220 (526)
.+|+.++.+...++. +++++++++++|.++|+|
T Consensus 2 ~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC------------chHHHHHHHHHHHHCcCC
Confidence 479999999888875 799999999999999985
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.96 E-value=0.42 Score=50.99 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=69.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
.+|.| +||+++|.+.+...|-+.-....|..+..++.+ +..+-.-|+.++.+|-....|+..|+..-
T Consensus 109 KQgKy-~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~------------FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 109 KQGKY-EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS------------FAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hccch-hHHHHHhhhhhccCCCCccchhhHHHHHHHHHH------------HHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 45778 789999999999888887777788877777652 44444566777777777777777776666
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhh
Q 009766 116 SKGHSSIDNELRLLDKFQKADSRNFHA 142 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiDprNyhA 142 (526)
..++ ...++-+-|+.+|++.|+|...
T Consensus 176 ~~Lg-~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 176 ESLG-NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHh-hHHHHHHhHHHHHhhCcccHHH
Confidence 5553 6778888888899998886543
No 159
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.83 E-value=0.25 Score=33.35 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCC
Q 009766 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~D 220 (526)
.+|++++.++..+++ ++++++++++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHCcCC
Confidence 478999999988875 799999999999999986
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.56 E-value=4.3 Score=45.58 Aligned_cols=67 Identities=4% Similarity=-0.025 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCCh
Q 009766 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (526)
Q Consensus 107 AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNy 175 (526)
+|++......+++ .+++++++++++|+..|.......-|+-++.+.|.+. ++.++.+.+-..|..|-
T Consensus 196 ~~~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~-~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 196 TLYFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK-EAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCChhhH
Confidence 4477777777774 8999999999999999999999999999999999984 78888888888888774
No 161
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.12 E-value=0.16 Score=53.78 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh
Q 009766 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (526)
Q Consensus 26 ~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy 105 (526)
+...+-.+....|++ ++|++.+..+|.+||......-.|..++.++.. -..|++-|+.++.+||.+.
T Consensus 116 e~k~~A~eAln~G~~-~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k------------p~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 116 DKKVQASEALNDGEF-DTAIELFTSAIELNPPLAILYAKRASVFLKLKK------------PNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HHHHHHHHHhcCcch-hhhhcccccccccCCchhhhcccccceeeeccC------------CchhhhhhhhhhccCcccc
Confidence 334445566678888 899999999999999999999999999998864 4788899999999999998
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDp 137 (526)
..+-.|+..=.-+ +.++++-..+..++++|-
T Consensus 183 ~~ykfrg~A~rll-g~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 183 KGYKFRGYAERLL-GNWEEAAHDLALACKLDY 213 (377)
T ss_pred cccchhhHHHHHh-hchHHHHHHHHHHHhccc
Confidence 8887776655444 478888888888888764
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=92.06 E-value=7.5 Score=37.47 Aligned_cols=98 Identities=8% Similarity=-0.141 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 009766 23 KLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (526)
Q Consensus 23 k~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NP 102 (526)
.+-.+...-...+++|.| ++|..++.-+...+|-++..|..-+-+.+.++ .|++++.++..+...++
T Consensus 36 ~le~iY~~Ay~~y~~Gk~-~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k------------~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRL-DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK------------QFQKACDLYAVAFTLLK 102 (165)
T ss_pred HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHccc
Confidence 344555666678899999 89999999999999999999999999888876 59999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 009766 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (526)
Q Consensus 103 Ksy~AW~HRrwvL~kl~~~~eeELe~~dkaLe 134 (526)
++|..-.|-+.+.-.++ ..+.+..++..+++
T Consensus 103 ~dp~p~f~agqC~l~l~-~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMR-KAAKARQCFELVNE 133 (165)
T ss_pred CCCCccchHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 99999999999998885 88899999999988
No 163
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.13 E-value=2.8 Score=46.76 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh
Q 009766 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (526)
Q Consensus 26 ~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy 105 (526)
..+..+....+..+. +.-+++-.++|.+||++.+||..-.+ +++. ...++.+++.++++....++
T Consensus 170 ~Aq~IMq~AWRERnp-~aRIkaA~eALei~pdCAdAYILLAE--------EeA~------Ti~Eae~l~rqAvkAgE~~l 234 (539)
T PF04184_consen 170 PAQEIMQKAWRERNP-QARIKAAKEALEINPDCADAYILLAE--------EEAS------TIVEAEELLRQAVKAGEASL 234 (539)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHhhhhhhHHHhhccc--------cccc------CHHHHHHHHHHHHHHHHHhh
Confidence 334445555566666 77899999999999999999976432 1221 24555556666555443332
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH--HHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHH
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR--RFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yR--r~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~ 183 (526)
. |....+..+..++ . .... .-|......| +-++.++|+. +++++.+.++++.+|. -+...-|..
T Consensus 235 g----~s~~~~~~g~~~e--~-----~~~R-dt~~~~y~KrRLAmCarklGr~-~EAIk~~rdLlke~p~-~~~l~Iren 300 (539)
T PF04184_consen 235 G----KSQFLQHHGHFWE--A-----WHRR-DTNVLVYAKRRLAMCARKLGRL-REAIKMFRDLLKEFPN-LDNLNIREN 300 (539)
T ss_pred c----hhhhhhcccchhh--h-----hhcc-ccchhhhhHHHHHHHHHHhCCh-HHHHHHHHHHHhhCCc-cchhhHHHH
Confidence 2 1122221110000 0 0011 1111222222 3446678887 4799999999998874 344556777
Q ss_pred HHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCC----cccHHHHHHHHccc
Q 009766 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD----QSGWFYHLWLLDQT 234 (526)
Q Consensus 184 LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~D----eSaW~Y~r~LL~~~ 234 (526)
|+.-|.. .++..-++..+..+.++ ..+|+|-+-||...
T Consensus 301 Lie~LLe-------------lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 301 LIEALLE-------------LQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHh-------------cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 7777653 23334445556665543 57899999998643
No 164
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=2.1 Score=48.37 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..|++++..++++|.+.|+...|.+-.-.++-+. ..|+++|.+.++-......|.-. ..|.+|.-+++..+ ++|..+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~D-ealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLD-EALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHH-HHHHHH
Confidence 5799999999999999999999986554555455 48999997666654333322222 78999999999885 677776
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
+ ..++.+--.-+-|..++.++++ |+++++-|...+.-+-+|+
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~------------ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLER------------YDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhh------------HHHHHHHHHHHHhcCCchH
Confidence 6 4566666688889999988876 4555555555554444433
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.54 E-value=6.8 Score=35.53 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 009766 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (526)
Q Consensus 60 tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs---y~AW~HRrwvL~kl~~~~eeELe~~dkaLeiD 136 (526)
.++..+.++...+|+ .++++.++++++...... ..++......+..++ .+++++..+++.+...
T Consensus 2 ~~~~~~A~a~d~~G~------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGR------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-RYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 367778888888874 689999999999975544 557777888888884 9999999999999998
Q ss_pred CC---ChhhhhHHHHHHHHhCcChHHHHHHHHHHHH
Q 009766 137 SR---NFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (526)
Q Consensus 137 pr---NyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~ 169 (526)
|. +-..+....-++..+|++. ++++.+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~-eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPK-EALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH
Confidence 88 7777777778888889884 68877666554
No 166
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.51 E-value=0.35 Score=53.11 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~ 192 (526)
.|+.++.++.++|+++|.+.+-|..|....-+.+.+ ..+|.-..++|+.+|...-+++.|+.....+....
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~-~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF-GGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechh-hhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 688999999999999999999999999776666666 47999999999999999999999988888887653
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.43 E-value=0.52 Score=34.53 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHH
Q 009766 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (526)
Q Consensus 177 AW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r 228 (526)
+|...+.++..+++ ++++++.+++++..+|+|..+|..+.
T Consensus 3 ~~~~la~~~~~~G~------------~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQ------------PDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 56777777777665 79999999999999999999997653
No 168
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.95 E-value=2 Score=45.82 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=120.8
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL 115 (526)
..+++ ++++++|..+|+..|.|..+--+-+-- ..- +. .-+=+|.++.++|..-..|++.+.+-+.+.
T Consensus 302 am~~~-~~a~~lYk~vlk~~~~nvEaiAcia~~--yfY---~~-------~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 302 AMEQQ-EDALQLYKLVLKLHPINVEAIACIAVG--YFY---DN-------NPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHHhH-HHHHHHHHHHHhcCCccceeeeeeeec--ccc---CC-------ChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 34677 789999999999999987654322110 000 11 237789999999999999999999888777
Q ss_pred HhCCCChHHHHHHHHHHHHhC---CCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 009766 116 SKGHSSIDNELRLLDKFQKAD---SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (526)
Q Consensus 116 ~kl~~~~eeELe~~dkaLeiD---prNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~ 192 (526)
... ..++-.|.++.+++..- .--...|++-++|.-.+|... -+-.++.-++..|+.+..|.++.+.|-..-+.
T Consensus 369 ~ya-qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-- 444 (478)
T KOG1129|consen 369 LYA-QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALTSDAQHGEALNNLAVLAARSGD-- 444 (478)
T ss_pred Hhh-cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH-HHHHHHHHHhccCcchHHHHHhHHHHHhhcCc--
Confidence 655 37888999999998753 344578999999988888773 57778888999999999999999887554332
Q ss_pred ccCccchhhhHHHHHHHHHHHHHhCCCCc
Q 009766 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (526)
Q Consensus 193 ~~g~~~~~eileeELe~v~~AI~~dP~De 221 (526)
++++-.++..|-.+.|+-.
T Consensus 445 ----------i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 445 ----------ILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ----------hHHHHHHHHHhhhhCcccc
Confidence 4777778888877777643
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.68 E-value=24 Score=35.47 Aligned_cols=101 Identities=11% Similarity=-0.047 Sum_probs=54.9
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh--
Q 009766 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNY---RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY-- 105 (526)
Q Consensus 31 ~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~---Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy-- 105 (526)
-.....+|+| ++|+..++.++...|....+=.- -+.+..+. ..+.+++..+++.++.+|.+.
T Consensus 39 A~~~~~~g~y-~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~------------~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 39 AQQKLQDGNW-KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN------------ADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHhCcCCCch
Confidence 3344566777 67777777777777776433322 12222222 247777777777777776653
Q ss_pred -HHHHHHHHHHHhCC-----------------CChHHHHHHHHHHHHhCCCChhhhh
Q 009766 106 -GAWHHRKWILSKGH-----------------SSIDNELRLLDKFQKADSRNFHAWN 144 (526)
Q Consensus 106 -~AW~HRrwvL~kl~-----------------~~~eeELe~~dkaLeiDprNyhAW~ 144 (526)
.|.+-++.+...+. ....+++..++.+++..|..-.+-.
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~ 162 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD 162 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 33444433311110 0013566667777777776554433
No 170
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.36 E-value=0.85 Score=36.60 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHh----C---CCChHHHHHHHHHHHhCCCChHHHHHH
Q 009766 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ----N---FKSYGAWHHRKWILSKGHSSIDNELRL 128 (526)
Q Consensus 56 Pd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~----N---PKsy~AW~HRrwvL~kl~~~~eeELe~ 128 (526)
|+-..+++..+.++..++ .+++++.++++++.+ . |.-..+++..+.+....+ .+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELG------------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 455678888999998886 489999999999964 1 222445666677777774 89999999
Q ss_pred HHHHHHhC
Q 009766 129 LDKFQKAD 136 (526)
Q Consensus 129 ~dkaLeiD 136 (526)
+++++++.
T Consensus 69 ~~~al~i~ 76 (78)
T PF13424_consen 69 YQKALDIF 76 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998864
No 171
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=89.33 E-value=15 Score=41.38 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=97.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHh----
Q 009766 33 HNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ---- 100 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~i--------NPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~---- 100 (526)
....+|+| +.|..++..+|.+ .|.-.+.-+.-+.++..++ .+.+++..++.+|.+
T Consensus 208 ~y~~~g~~-e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~------------k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 208 MYAVQGRL-EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG------------KYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHhccH-HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHHHHHh
Confidence 34467999 8999999999999 8888888887777777765 356666666666643
Q ss_pred ----CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh--------hhHHHHHHHHhCcChHHHHHHHHHHH
Q 009766 101 ----NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA--------WNYRRFVAASMNRSEEDELKYTEDMI 168 (526)
Q Consensus 101 ----NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhA--------W~yRr~lL~~Lg~~~eeELe~tdkaI 168 (526)
||....+.+.-.-++.+. +.++++-.+|++++++..+.+-+ -..-+-+...++.+ ++++.++.+++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~-Eea~~l~q~al 352 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY-EEAKKLLQKAL 352 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 333333333223333333 58999999999999987653322 22223333444555 35666666666
Q ss_pred Hhcc-----CC---hhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHh
Q 009766 169 CNNF-----SN---YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (526)
Q Consensus 169 ~~nP-----sN---ySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~ 216 (526)
++.- .| ..-..+.+.++...++ ++++.+++++||..
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk------------~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGK------------YKEAEELYKKAIQI 396 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcc------------hhHHHHHHHHHHHH
Confidence 5422 22 2334445566666655 57777777777754
No 172
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.16 E-value=7.9 Score=35.12 Aligned_cols=113 Identities=11% Similarity=-0.062 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhCCCC-hH--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHhCcChHHH
Q 009766 87 LDEELRVVESALRQNFKS-YG--AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDE 160 (526)
Q Consensus 87 ~~eEL~~~e~aL~~NPKs-y~--AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNy---hAW~yRr~lL~~Lg~~~eeE 160 (526)
....-..++.++..+|++ |. +.....-+.... +.++++++.++.++...|.+. -++.....++-..+.++ ++
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d-~A 104 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD-EA 104 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH-HH
Confidence 455566789999999999 43 333333333334 489999999999999875542 35555566666677774 68
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHH
Q 009766 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (526)
Q Consensus 161 Le~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI 214 (526)
+..++. +...+....++..+|-++...++ ++++...|.+||
T Consensus 105 l~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~------------~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQ-IPDEAFKALAAELLGDIYLAQGD------------YDEARAAYQKAL 145 (145)
T ss_pred HHHHHh-ccCcchHHHHHHHHHHHHHHCCC------------HHHHHHHHHHhC
Confidence 877654 45555566777777888777665 588888888764
No 173
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.99 E-value=0.94 Score=33.13 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhH
Q 009766 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNY 145 (526)
Q Consensus 107 AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~y 145 (526)
+|.....++...+ .++++.+.++++++.+|.|..+|..
T Consensus 3 ~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4444555555543 5566666666666666666655543
No 174
>PLN03077 Protein ECB2; Provisional
Probab=88.88 E-value=25 Score=41.32 Aligned_cols=167 Identities=8% Similarity=-0.020 Sum_probs=104.1
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHH--hCCCChHHHHHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWHHRKW 113 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~--~NPKsy~AW~HRrw 113 (526)
+.|.+ ++|+..++.+ +.+...||.--..+.+.+ ..++++++++++.. ..|...+...--.
T Consensus 536 k~G~~-~~A~~~f~~~----~~d~~s~n~lI~~~~~~G------------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~- 597 (857)
T PLN03077 536 RCGRM-NYAWNQFNSH----EKDVVSWNILLTGYVAHG------------KGSMAVELFNRMVESGVNPDEVTFISLLC- 597 (857)
T ss_pred HcCCH-HHHHHHHHhc----CCChhhHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCCcccHHHHHH-
Confidence 35666 7888888875 667788997766666655 47999999999987 4465554333222
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH--HHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 009766 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR--RFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (526)
Q Consensus 114 vL~kl~~~~eeELe~~dkaLeiDprNyhAW~yR--r~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~ 191 (526)
...+. +.+++.+++++.+.+..+-.....+|- ..++.+.|.. +++.+++++. ...|+ ...|.-.-.... ...
T Consensus 598 a~~~~-g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~-~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~- 671 (857)
T PLN03077 598 ACSRS-GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL-TEAYNFINKM-PITPD-PAVWGALLNACR-IHR- 671 (857)
T ss_pred HHhhc-ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcC-
Confidence 22333 478999999999986554444444443 3335555666 4677777764 23443 455544332221 111
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccC
Q 009766 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (526)
Q Consensus 192 ~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~ 236 (526)
-.+..-...+++++++|++.+.+....+++....+
T Consensus 672 ----------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 672 ----------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred ----------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 12333345677889999999988877777765444
No 175
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.77 E-value=14 Score=38.55 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 009766 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (526)
Q Consensus 46 ~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeE 125 (526)
.-+++.+.-||.+..+|----..-..+...............+.-|..+++||+.||.+...|....-+..+.. .-+.-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 34678899999999999865554444432000001233567889999999999999999999988877777664 45566
Q ss_pred HHHHHHHHHhCCCChhhhhHH-HHHHHHhCcC
Q 009766 126 LRLLDKFQKADSRNFHAWNYR-RFVAASMNRS 156 (526)
Q Consensus 126 Le~~dkaLeiDprNyhAW~yR-r~lL~~Lg~~ 156 (526)
.+-.++++..+|.++..|... .|....++.+
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASF 116 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccC
Confidence 778999999999999999765 4445555543
No 176
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.29 E-value=0.86 Score=48.71 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHH
Q 009766 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (526)
Q Consensus 84 ~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~ 163 (526)
++.|+++++||...+..+|-|.-...+|.....++. .|.-+=.-|+.++.+|-+..-|++.|+-.-..||.. +++-+-
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~-~EAKkD 187 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN-MEAKKD 187 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH-HHHHHh
Confidence 467999999999999999999999999998888775 677677789999999999999999999888888877 468888
Q ss_pred HHHHHHhccCChhH
Q 009766 164 TEDMICNNFSNYSA 177 (526)
Q Consensus 164 tdkaI~~nPsNySA 177 (526)
|+.+++..|.+...
T Consensus 188 ~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 188 CETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhhCcccHHH
Confidence 99999999997653
No 177
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.87 E-value=1.1 Score=30.26 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 009766 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (526)
Q Consensus 106 ~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN 139 (526)
.+|..++-+...++ .+++++++++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC
Confidence 46777777777764 7777778888877777744
No 178
>PRK10941 hypothetical protein; Provisional
Probab=87.34 E-value=4.1 Score=41.97 Aligned_cols=69 Identities=17% Similarity=-0.033 Sum_probs=59.8
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr 112 (526)
..++.+++ ++||.+.+.+|.++|++..-|.-||.+..+++. +..|+.-++.-+...|+.+.+=.-|.
T Consensus 190 ~~~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c------------~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 190 ALMEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDC------------EHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 33567788 999999999999999999999999999999974 68899999999999999988766555
Q ss_pred HH
Q 009766 113 WI 114 (526)
Q Consensus 113 wv 114 (526)
.+
T Consensus 257 ql 258 (269)
T PRK10941 257 QI 258 (269)
T ss_pred HH
Confidence 44
No 179
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.20 E-value=8.6 Score=36.38 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhc-cCC---hhHHHHHHHHHHHhhh
Q 009766 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN-FSN---YSAWHNRSLLLSNLLK 190 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~n-PsN---ySAW~yR~~LL~~L~~ 190 (526)
+.++.+|+.+.++|.+-|++.+|+++|...++.-+.. +++|+-.+++++.. +.- -.++.+|+.+...+++
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~-e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD-EEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4788888888888888888889988888888877777 57888888888853 332 2467788888777765
No 180
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.96 E-value=13 Score=35.02 Aligned_cols=81 Identities=14% Similarity=-0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCCh-
Q 009766 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY- 105 (526)
Q Consensus 27 l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy- 105 (526)
+...-.+..++|.| ++|.+.++.+....|-...+=.-+-.+....-. ...+.+++..+++-|++||.+.
T Consensus 13 ly~~a~~~l~~~~Y-~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---------~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNY-EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---------QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHhCCCCCC
Confidence 44445566788889 788888888888888776554444333333221 2468889999999999888775
Q ss_pred --HHHHHHHHHHHh
Q 009766 106 --GAWHHRKWILSK 117 (526)
Q Consensus 106 --~AW~HRrwvL~k 117 (526)
-|++.|+..-..
T Consensus 83 vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 83 VDYAYYMRGLSYYE 96 (142)
T ss_pred ccHHHHHHHHHHHH
Confidence 456666655443
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=85.51 E-value=7.6 Score=40.22 Aligned_cols=88 Identities=8% Similarity=0.018 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHH
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~td 165 (526)
.+++++.+++.+....+.+....+...++.-.++ .|+++-+.+..+++.+|+|..+..+..-+-..+|...+..-++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 3566666777766666666666665555555553 677777777777777777777777766666666665322223444
Q ss_pred HHHHhccCC
Q 009766 166 DMICNNFSN 174 (526)
Q Consensus 166 kaI~~nPsN 174 (526)
++-..+|..
T Consensus 261 qL~~~~p~h 269 (290)
T PF04733_consen 261 QLKQSNPNH 269 (290)
T ss_dssp HCHHHTTTS
T ss_pred HHHHhCCCC
Confidence 444455553
No 182
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.65 E-value=82 Score=38.69 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=12.4
Q ss_pred HHHHHH-HHHhhh--h-ccccchhHHHHHH
Q 009766 434 IAKEID-HFRELL--S-LINCKIGKLTLAR 459 (526)
Q Consensus 434 ~~~~~~-~~~~~~--~-~~~~~~~~~~~~~ 459 (526)
+..-+. ++|+|- . +.+++ |++.+.+
T Consensus 984 ~~~~~~~~l~~l~~~~~~~~~~-g~~~~~~ 1012 (1060)
T PLN03218 984 VGQAVAALLRRLGLPYQGSESH-GKLRING 1012 (1060)
T ss_pred HHHHHHHHHHHhCCCCCCCCCC-CeEEecc
Confidence 444443 346642 2 55666 7665444
No 183
>PLN03077 Protein ECB2; Provisional
Probab=84.61 E-value=31 Score=40.50 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=90.0
Q ss_pred hcCCCcHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-
Q 009766 36 HNHIYSKEAVELSTKLLE--TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK- 112 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~--iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr- 112 (526)
+.|.. ++|+++++++.. +.|+..|....-.- ..+. ..+++++++++.+...++-.+...+|-+
T Consensus 566 ~~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 566 AHGKG-SMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------GMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred HcCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------ChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 56777 899999999887 67888886543322 2222 2579999999999966555555555544
Q ss_pred -HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 113 -WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 113 -wvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
-++.+. +.++++.++++++ .+.| |...|.----....-+..+ ..-...+++++.+|+|...+.-.+.++...++
T Consensus 632 v~~l~r~-G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 632 VDLLGRA-GKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHhC-CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 334455 4889999999876 3444 4566665433333223332 23335678899999998887776766665543
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=84.60 E-value=40 Score=38.66 Aligned_cols=167 Identities=7% Similarity=-0.027 Sum_probs=85.0
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN--FKSYGAWHHRKWI 114 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N--PKsy~AW~HRrwv 114 (526)
.|.+ ++|..+++++.. | +...||.--..+.+.+ ..++++++++++.... |...+ +..---.
T Consensus 373 ~G~~-~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G------------~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a 435 (697)
T PLN03081 373 WGRM-EDARNVFDRMPR--K-NLISWNALIAGYGNHG------------RGTKAVEMFERMIAEGVAPNHVT-FLAVLSA 435 (697)
T ss_pred CCCH-HHHHHHHHhCCC--C-CeeeHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCCHHH-HHHHHHH
Confidence 3444 566666666543 2 3345665444444443 3677777777776533 33222 2211111
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhh--hhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 009766 115 LSKGHSSIDNELRLLDKFQKADSRNFHA--WNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (526)
Q Consensus 115 L~kl~~~~eeELe~~dkaLeiDprNyhA--W~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~ 192 (526)
+.+. +.+++++++++.+.+...-.... ++--.-++.+.|.. +++++.+++. ...| |...|.-.-......+
T Consensus 436 ~~~~-g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~-~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g--- 508 (697)
T PLN03081 436 CRYS-GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL-DEAYAMIRRA-PFKP-TVNMWAALLTACRIHK--- 508 (697)
T ss_pred HhcC-CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH-HHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC---
Confidence 2222 36777777777776543222222 22222334444554 3566655442 1222 2334443322222221
Q ss_pred ccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccC
Q 009766 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (526)
Q Consensus 193 ~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~ 236 (526)
.++.+...+++++..+|++...+.....++.+..+
T Consensus 509 ---------~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 509 ---------NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred ---------CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 24666677788889999998888777776655444
No 185
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=4.8 Score=41.27 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
..|++.|.++|.+||...+.|..|..+-.++. .++....-+.+++.+.|...-+=+.-+..+...+ .
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~------------~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-~ 93 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLK------------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-G 93 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhh------------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-c
Confidence 78999999999999999999998888777654 4777788899999999999888877766666554 6
Q ss_pred hHHHHHHHHHHHH
Q 009766 122 IDNELRLLDKFQK 134 (526)
Q Consensus 122 ~eeELe~~dkaLe 134 (526)
|++++..+.++..
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 8889998888844
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.53 E-value=1.9 Score=34.54 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---C-CC---hhhhhHHHHHHHHhCcChHHHHHHHHHHHHh
Q 009766 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD---S-RN---FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (526)
Q Consensus 103 Ksy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiD---p-rN---yhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~ 170 (526)
.-..++++.+.++...+ .++++++++++++++- + .+ ..++...+.+...+|.+ +++++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY-EEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh
Confidence 33467788888888885 8999999999999762 1 22 34555667777788887 4799999988875
No 187
>PF13205 Big_5: Bacterial Ig-like domain
Probab=83.35 E-value=8.1 Score=32.81 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=45.1
Q ss_pred cceeEeecccccccccc-ceEEecccCcCccceeeeCCCCCCccceeEEEeccCCCCCCCCCccceEEEecCcccccccC
Q 009766 279 FPLVLYFNQAVEGVNSS-TITVDSELNTNKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISS 357 (526)
Q Consensus 279 ~~~~~~f~~~v~~~~~~-~~~~~~~~~~~~~~~w~p~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (526)
.++.|.||+||...+.. .+.+.........+.+.... . . ....... ..+.....|.|.|.-| |.+.
T Consensus 23 ~~i~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~~~~---~-~--~~~i~p~---~~L~~~t~Y~v~i~~~----i~d~ 89 (107)
T PF13205_consen 23 SPIVITFSEPVDPASVSSAITITDSNGSGVPVSFSSWD---G-N--TLTITPS---QPLKPGTTYTVTIDSG----IKDL 89 (107)
T ss_pred CeEEEEECCceecCccceEEEEEecCCCcEEEEEEEcc---C-C--EEEEEEC---CcCCCCCEEEEEECCC----CCCC
Confidence 36999999999754422 22332222233445544111 1 1 1222211 2466678999999655 6677
Q ss_pred CCcccCCCcc---eEEE
Q 009766 358 SGFHYSNPFC---FAFR 371 (526)
Q Consensus 358 ~g~~~~~p~~---~~~~ 371 (526)
.|.....|.. ++|+
T Consensus 90 ~Gn~l~~~~~~~~~~Ft 106 (107)
T PF13205_consen 90 AGNPLAAPFSPYTWSFT 106 (107)
T ss_pred CCCccCCCceEeeEEEE
Confidence 8876666766 7775
No 188
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.06 E-value=33 Score=35.92 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcCh
Q 009766 89 EELRVVESALRQNFKSYGAWHHRKWILSKGH-----------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE 157 (526)
Q Consensus 89 eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~-----------~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~ 157 (526)
+...-+++.++.||.+..+|---.-.-..+. ...+.-|..++++|+.+|.+..-|....-+...+-..
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~- 81 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS- 81 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-
Confidence 3456688899999999999974433333221 1246788899999999999888888776666655422
Q ss_pred HHHHHHHHHHHHhccCChhHHHHH
Q 009766 158 EDELKYTEDMICNNFSNYSAWHNR 181 (526)
Q Consensus 158 eeELe~tdkaI~~nPsNySAW~yR 181 (526)
++-.+-.++++..+|.++..|--.
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHH
Confidence 344556799999999999999543
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=82.02 E-value=29 Score=33.56 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh---HHHHHHHHHHHhhhhhcc
Q 009766 121 SIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS---AWHNRSLLLSNLLKRKVE 194 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNy---hAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS---AW~yR~~LL~~L~~~~~~ 194 (526)
.+.++++.+++++...|... .|+...+.+.-..+.+ .+++..+++.|+.+|.+.. |++.++.....+.+...
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y-~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~- 97 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY-EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL- 97 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch-
Confidence 56666666666666655443 2333333333344444 3566666666666666553 45555554333322100
Q ss_pred CccchhhhHHHHHHHHHHHHHhCCCCccc
Q 009766 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (526)
Q Consensus 195 g~~~~~eileeELe~v~~AI~~dP~DeSa 223 (526)
..........+++..+...+...|+..-+
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 00112234578888888888889987644
No 190
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.57 E-value=49 Score=39.51 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
+.+.+++.-++++++.+|+...|=.....++.+++ ..++++.+++..-...+.+-..-..-..+++.++..+ +.+.++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d-~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD-EAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh-HHHHHH
Confidence 67899999999999999999999999999999985 8899998888776677777778888888999999985 799999
Q ss_pred HHHHHhccCChhHHHHHH
Q 009766 165 EDMICNNFSNYSAWHNRS 182 (526)
Q Consensus 165 dkaI~~nPsNySAW~yR~ 182 (526)
.+++..+|+ +.-..+..
T Consensus 101 e~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLF 117 (932)
T ss_pred HHHHhhCCc-HHHHHHHH
Confidence 999999999 55444433
No 191
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=80.92 E-value=66 Score=36.89 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~ 170 (526)
.++++.+.++++.+ +|..+|+--.-.+.+.|.. +++++.++++++.
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~-~~A~~lf~~M~~~ 420 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG-TKAVEMFERMIAE 420 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 45555555554432 3555555544444444554 3566666665553
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=79.20 E-value=7.9 Score=43.67 Aligned_cols=109 Identities=11% Similarity=0.002 Sum_probs=77.4
Q ss_pred CCChHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHh--CcChHHHHHHHHHHHHhccCC
Q 009766 102 FKSYGAWHHRKWILSKGH-----SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM--NRSEEDELKYTEDMICNNFSN 174 (526)
Q Consensus 102 PKsy~AW~HRrwvL~kl~-----~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~L--g~~~eeELe~tdkaI~~nPsN 174 (526)
||.|+.--+-.|.++... ..+..|+..+.+++..-|.+....-.|.-++.+- .-..-.+|.-|..+++.||+-
T Consensus 365 ~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~ 444 (758)
T KOG1310|consen 365 PRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI 444 (758)
T ss_pred cchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence 345555555566666543 1345788888888888888888888886554321 111135888889999999999
Q ss_pred hhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcc
Q 009766 175 YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (526)
Q Consensus 175 ySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeS 222 (526)
.-||++..-.|..|.+ +.+++++-..+....|.|..
T Consensus 445 ~kah~~la~aL~el~r------------~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 445 QKAHFRLARALNELTR------------YLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHHHhh------------HHHhhhhHHHHhhcCchhhh
Confidence 9999999888888876 67788887777777776553
No 193
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.82 E-value=5.8 Score=42.13 Aligned_cols=75 Identities=12% Similarity=-0.079 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHH
Q 009766 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA 107 (526)
Q Consensus 28 ~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~A 107 (526)
..+....+..|.. ++|..+++.+|.+.|++..+..--|.+.+... .+-++=.||-++|.+.|-|..|
T Consensus 120 l~~A~~~~~~Gk~-ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~------------~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 120 LKAAGRSRKDGKL-EKAMTLFEHALALAPTNPQILIEMGQFREMHN------------EIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh------------hhHhhhhhhheeeeeCCCchHH
Confidence 3444566678888 89999999999999999999988887776653 3567778999999999999999
Q ss_pred HHHHHHHH
Q 009766 108 WHHRKWIL 115 (526)
Q Consensus 108 W~HRrwvL 115 (526)
-..|.-..
T Consensus 187 LvnR~RT~ 194 (472)
T KOG3824|consen 187 LVNRARTT 194 (472)
T ss_pred Hhhhhccc
Confidence 88885443
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=78.70 E-value=11 Score=44.75 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (526)
.+.++++.++++++.+|+--.|=.+++.++.++|+.+ +++.+.+..-..-+.|-........++..++.
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~---------- 92 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD-EALKLLEALYGLKGTDDLTLQFLQNVYRDLGK---------- 92 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch-hHHHHHhhhccCCCCchHHHHHHHHHHHHHhh----------
Confidence 5789999999999999999999999999999999995 68877666655677787877777777777654
Q ss_pred hhHHHHHHHHHHHHHhCCCC
Q 009766 201 KVLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 201 eileeELe~v~~AI~~dP~D 220 (526)
+++++.++.+++.++|+-
T Consensus 93 --~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 93 --LDEAVHLYERANQKYPSE 110 (932)
T ss_pred --hhHHHHHHHHHHhhCCcH
Confidence 799999999999999983
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.68 E-value=4 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.068 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC
Q 009766 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (526)
Q Consensus 59 ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs 104 (526)
+.+|..++.+...++ .+++++.+++++++.+|+|
T Consensus 1 a~~~~~lg~~y~~~~------------~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLG------------DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTT------------SHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCC
Confidence 357899999999887 5899999999999999953
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=78.33 E-value=45 Score=33.51 Aligned_cols=118 Identities=7% Similarity=-0.124 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh---hHHHHHHHHhCcChHHHHHHHHHHHHhccCChh---H
Q 009766 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW---NYRRFVAASMNRSEEDELKYTEDMICNNFSNYS---A 177 (526)
Q Consensus 104 sy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW---~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS---A 177 (526)
+...++....-.... +.++++++.+++++..+|....+= ..-+.+.-+.+.+ .+++..+++.|+.+|.+.. |
T Consensus 31 ~~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQD-GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-PLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCcCCCchHHH
Confidence 444454444444433 478888888888888888764332 1122233344555 4788888888888877753 3
Q ss_pred HHHHHHHHHHhhhh-----hc-cCccchhhhHHHHHHHHHHHHHhCCCCccc
Q 009766 178 WHNRSLLLSNLLKR-----KV-EGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (526)
Q Consensus 178 W~yR~~LL~~L~~~-----~~-~g~~~~~eileeELe~v~~AI~~dP~DeSa 223 (526)
++.++.....+... .. ...........++++.+.+.+...|+.+-+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 44444332222210 00 000111233577889999999999987643
No 197
>PLN03218 maturation of RBCL 1; Provisional
Probab=78.14 E-value=1.8e+02 Score=35.85 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHhh-ccCcchhhhhh-----
Q 009766 427 FEWRAATIAKEIDHFRELLSLINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLELYNDLM-RLDPTHVQYYK----- 500 (526)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----- 500 (526)
-.|..++ +..|++... ...+--..|+..+| +|- . +..-.+++..++.++. .-++.|..+|.
T Consensus 825 n~w~~~A----l~lf~eM~~-~Gi~Pd~~T~~~vL-~cl-~------~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 825 NKWTSWA----LMVYRETIS-AGTLPTMEVLSQVL-GCL-Q------LPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred cchHHHH----HHHHHHHHH-CCCCCCHHHHHHHH-HHh-c------ccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 3565543 456777653 44555567777777 552 1 2233566777776542 34555655543
Q ss_pred ----chhhhhhhhhhhhh
Q 009766 501 ----DQHSLVLLQQVFFL 514 (526)
Q Consensus 501 ----~~~~~~~~~~~~~~ 514 (526)
+++.+.+++...-.
T Consensus 892 ~~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 892 FGEYDPRAFSLLEEAASL 909 (1060)
T ss_pred hccChHHHHHHHHHHHHc
Confidence 45566666665443
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=9.4 Score=39.24 Aligned_cols=82 Identities=10% Similarity=-0.006 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHH
Q 009766 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (526)
Q Consensus 84 ~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~ 163 (526)
...|..++.++.++|.+||.....|..|..+-.++. .++...+.|.++++++|+-.-+=..-+..+.....++ +.+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~-eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD-EAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc-HHHHH
Confidence 357899999999999999999999999988888774 8889999999999999988877666655555555453 45554
Q ss_pred HHHH
Q 009766 164 TEDM 167 (526)
Q Consensus 164 tdka 167 (526)
..++
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 4444
No 199
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.44 E-value=8.5 Score=36.04 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhc
Q 009766 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLT 74 (526)
Q Consensus 25 r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~ 74 (526)
..+.....+...+|+| .-|+.+++.++..+|++..+-..+..++.+++.
T Consensus 71 d~vl~~A~~~~~~gd~-~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDY-QWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3555667777889999 899999999999999999999999999999974
No 200
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.33 E-value=85 Score=35.49 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK-WILSKGHS 120 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr-wvL~kl~~ 120 (526)
.+.+.+|..++...+.+...|..--....+.+ .+.+=-+.+.++|..||+++..|.+-. |.+... .
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~------------~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n-~ 154 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKK------------TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN-L 154 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-c
Confidence 46788999999999999999974333333322 234445789999999999999999874 555544 4
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWN 144 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~ 144 (526)
..+.+-+++.+.|..+|++.--|.
T Consensus 155 ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 155 NIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred chHHHHHHHHHHhhcCCCChHHHH
Confidence 688999999999999999999885
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=77.00 E-value=21 Score=33.56 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhc-------CCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLT-------ENDSDPDSLKSILDEELRVVESALRQNF 102 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~y---tAWN~Rr~vL~~L~~-------~~~sdPe~~~~~~~eEL~~~e~aL~~NP 102 (526)
+...+++| ++|+..++..|++||.|. -|+..|+.+-..... ..+.|| ....+++.-++.++...|
T Consensus 56 ayy~~~~y-~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~----~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 56 AYYKQGDY-EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDP----TPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHccCH-HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCc----HHHHHHHHHHHHHHHHCc
Confidence 44567888 899999999999999997 467777766555431 122344 456889999999999999
Q ss_pred CChHH
Q 009766 103 KSYGA 107 (526)
Q Consensus 103 Ksy~A 107 (526)
+|.-|
T Consensus 131 ~S~ya 135 (142)
T PF13512_consen 131 NSEYA 135 (142)
T ss_pred CChhH
Confidence 88543
No 202
>PRK10941 hypothetical protein; Provisional
Probab=76.72 E-value=16 Score=37.76 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHH
Q 009766 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR 181 (526)
..++.++.+++.++.++|.+..-|.-|+.+..+++-+ ..+++..+..|+..|.+..+=--|
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~-~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE-HVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHhCCCchhHHHHH
Confidence 4789999999999999999999999999999999998 478888899999999998874433
No 203
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=76.15 E-value=1.2e+02 Score=32.77 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDp 137 (526)
.++.++..+.++++-|||+.-|=.-.+-+.-.. +.|+.+++.++.+++.||
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAK-GDYQKAVEALERVLEQNP 245 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhc-cchHHHHHHHHHHHHhCh
Confidence 444555555555555555554444333333322 245555555555555555
No 204
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=76.10 E-value=20 Score=37.15 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHH
Q 009766 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (526)
Q Consensus 29 ~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW 108 (526)
.+....+..|+--++|+..++.+-...|......|....+...++ .++++-..+..++..+|+++.+.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~------------~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG------------HYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-------------HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhccCCHHHH
Confidence 444555555543389999999998888899999998888888776 58999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 009766 109 HHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (526)
Q Consensus 109 ~HRrwvL~kl~~~~eeELe~~dkaLeiDpr 138 (526)
.+...+-..++...+..-+++..+-..+|.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 998666666653323344567776677887
No 205
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=73.51 E-value=1.2e+02 Score=34.17 Aligned_cols=186 Identities=15% Similarity=0.077 Sum_probs=105.3
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC
Q 009766 30 QFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (526)
Q Consensus 30 ~~~~~~~~geyseEAL~lt~kaL~i--------NPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N 101 (526)
.-+..+..++| .+|..+|.++|.+ +|...++.+.-..++...+ .+.++-.+|+.++.+-
T Consensus 247 ~a~~y~~~~k~-~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G------------Kf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 247 LALVYRSLGKY-DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG------------KFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC------------ChHHHHHHHHHHHHHH
Confidence 44456678888 7899999999875 4555566665555555544 3555555555555544
Q ss_pred CC-------ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----CCChh---hhhHHHHHHHHhCcChHHHHHHHHH
Q 009766 102 FK-------SYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD-----SRNFH---AWNYRRFVAASMNRSEEDELKYTED 166 (526)
Q Consensus 102 PK-------sy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiD-----prNyh---AW~yRr~lL~~Lg~~~eeELe~tdk 166 (526)
-+ -..+-.---..+..+...+++++.++.+++++. +.|+. --..-++++.++|++. ++.+++.+
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~-ea~~~~k~ 392 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK-EAEELYKK 392 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh-HHHHHHHH
Confidence 33 222222222222222257889999999888865 33422 2334467788889994 78899999
Q ss_pred HHHhc----c----C-ChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCC---cccHHHHHHHHccc
Q 009766 167 MICNN----F----S-NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD---QSGWFYHLWLLDQT 234 (526)
Q Consensus 167 aI~~n----P----s-NySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~D---eSaW~Y~r~LL~~~ 234 (526)
+|.+. . . +.+.|+.-.-. ..+.++ .....++.+.+.-. +.+ -|++ ......+..++.+.
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~-----~~a~~l~~~~~~i~-~~~--g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAY-EELKKY-----EEAEQLFEEAKDIM-KLC--GPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHH-HHhccc-----chHHHHHHHHHHHH-HHh--CCCCCchHHHHHHHHHHHHHc
Confidence 99865 2 2 44455443333 333332 12234455555554 333 3444 34444555555555
Q ss_pred cCCC
Q 009766 235 VRVD 238 (526)
Q Consensus 235 ~~~e 238 (526)
.+.|
T Consensus 464 g~~e 467 (508)
T KOG1840|consen 464 GNYE 467 (508)
T ss_pred ccHH
Confidence 5544
No 206
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=72.71 E-value=1.5e+02 Score=32.16 Aligned_cols=139 Identities=17% Similarity=0.104 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC
Q 009766 23 KLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY-TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (526)
Q Consensus 23 k~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~y-tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N 101 (526)
+...++.--..-+..|-| ++|=+.+..+... |++. .|-.+--.+.+.- +.++++++..++..+..
T Consensus 106 r~lAl~qL~~Dym~aGl~-DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~t------------reW~KAId~A~~L~k~~ 171 (389)
T COG2956 106 RLLALQQLGRDYMAAGLL-DRAEDIFNQLVDE-GEFAEGALQQLLNIYQAT------------REWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHHHHHHHHhhhh-hHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHcC
Confidence 444444444444555666 5555555544332 2222 2222222222222 35788888888888877
Q ss_pred CCChHH--HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChh
Q 009766 102 FKSYGA--WHHRKWILSKG--HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (526)
Q Consensus 102 PKsy~A--W~HRrwvL~kl--~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNyS 176 (526)
++.|.. =++-|-+-+.. ....+.++..+.++++.||++..|=--.+-+.-..|.+ +.+++.....++.||.--+
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y-~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY-QKAVEALERVLEQNPEYLS 249 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch-HHHHHHHHHHHHhChHHHH
Confidence 776653 23334333332 14678999999999999999999977777777777888 4789999999998886544
No 207
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.28 E-value=23 Score=39.74 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=51.3
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~ 109 (526)
+.+.| .+.-+.+.++|.++|++...|.+=..-....+. .++.+-+.+-+.|+.||.++..|.
T Consensus 117 k~~~~-~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-----------ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 117 KKKTY-GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-----------NIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred Hhcch-hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-----------chHHHHHHHHHHhhcCCCChHHHH
Confidence 33447 788899999999999999999987655554432 478888999999999999999995
No 208
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=72.06 E-value=1.6e+02 Score=32.32 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=111.0
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHH-----------
Q 009766 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR----------- 99 (526)
Q Consensus 31 ~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~----------- 99 (526)
.+-....|+| +.|..-.++++..+|.+.++-....++..+.+. +.+-+..+.++-+
T Consensus 160 arlll~~~d~-~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~------------~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 160 ARLLLNRRDY-PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA------------WQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred HHHHHhCCCc-hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHccCCChHHHHH
Confidence 4445577889 889999999999999999999999998888874 2222222222222
Q ss_pred -------------hCCCChHH----HHHHHHHHH--------------hCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 009766 100 -------------QNFKSYGA----WHHRKWILS--------------KGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (526)
Q Consensus 100 -------------~NPKsy~A----W~HRrwvL~--------------kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~ 148 (526)
.+++.... |..----+. .+ +..+++.+.+...++..-+.- -.-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l-~~~~~A~~~i~~~Lk~~~D~~-----L~~ 300 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL-GDHDEAQEIIEDALKRQWDPR-----LCR 300 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc-CChHHHHHHHHHHHHhccChh-----HHH
Confidence 12222221 110000000 01 234566777776666433222 111
Q ss_pred HHHHh--CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHH
Q 009766 149 VAASM--NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (526)
Q Consensus 149 lL~~L--g~~~eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y 226 (526)
.+..+ +.+ +.-++..++++..+|.+...|...|.+..+ .+.+.++=+++..||..-|+. +.|.+
T Consensus 301 ~~~~l~~~d~-~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k------------~~~w~kA~~~leaAl~~~~s~-~~~~~ 366 (400)
T COG3071 301 LIPRLRPGDP-EPLIKAAEKWLKQHPEDPLLLSTLGRLALK------------NKLWGKASEALEAALKLRPSA-SDYAE 366 (400)
T ss_pred HHhhcCCCCc-hHHHHHHHHHHHhCCCChhHHHHHHHHHHH------------hhHHHHHHHHHHHHHhcCCCh-hhHHH
Confidence 12222 223 467788899999999999988888887654 245788888888999888875 47889
Q ss_pred HHHHHccccCC
Q 009766 227 HLWLLDQTVRV 237 (526)
Q Consensus 227 ~r~LL~~~~~~ 237 (526)
....+.++...
T Consensus 367 la~~~~~~g~~ 377 (400)
T COG3071 367 LADALDQLGEP 377 (400)
T ss_pred HHHHHHHcCCh
Confidence 99999886554
No 209
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.93 E-value=13 Score=39.75 Aligned_cols=114 Identities=10% Similarity=-0.004 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhC---CCCh-HHHHHHHHHHHhCCCChHHHHHHHH
Q 009766 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN---FKSY-GAWHHRKWILSKGHSSIDNELRLLD 130 (526)
Q Consensus 55 NPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~N---PKsy-~AW~HRrwvL~kl~~~~eeELe~~d 130 (526)
+.-+-.|=|||..==..... +.|..+..+|...|..+ |+-- -.+.+|..+-..+ ++|...|.-|.
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~----------Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs 143 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKE----------KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCS 143 (390)
T ss_pred CChHHHHHHHHHHhHHHHHh----------hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHH
Confidence 34455677776443333321 24677777777777543 3322 2344444444444 36777777777
Q ss_pred HHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHH
Q 009766 131 KFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHN 180 (526)
Q Consensus 131 kaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~y 180 (526)
+++.++|.+--|..--.-++-.|.++. +++.+|+..+.++-.+-.+--.
T Consensus 144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~-~a~nw~ee~~~~d~e~K~~~~l 192 (390)
T KOG0551|consen 144 AALKLKPTHLKAYIRGAKCLLELERFA-EAVNWCEEGLQIDDEAKKAIEL 192 (390)
T ss_pred HHHhcCcchhhhhhhhhHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHH
Confidence 777777777777444455555555542 4556666555555555554433
No 210
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.54 E-value=13 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCC
Q 009766 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~D 220 (526)
.+|..++.++..++. +++++.++..++..+|++
T Consensus 2 ~~~~~~a~~~~~~~~------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh------------HHHHHHHHHHHHccCCCC
Confidence 467777888777654 689999999999998864
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.38 E-value=48 Score=34.30 Aligned_cols=105 Identities=14% Similarity=0.013 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChH
Q 009766 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (526)
Q Consensus 27 l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~ 106 (526)
+.++-+..+..|.| .+|-+.+..-|...|+..-+=|-+-|+-+.+.. +..+.++-..+..+.+..||+..
T Consensus 144 ~Y~~A~~~~ksgdy-~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~---------qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDY-AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA---------QGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh---------cccchHHHHHHHHHHHhCCCCCC
Confidence 66667777788899 789999999999999986544444444333321 23689999999999998887754
Q ss_pred ---HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 009766 107 ---AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (526)
Q Consensus 107 ---AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhA 142 (526)
+-.--+-++..++ .-+++...+..+++..|.+-.|
T Consensus 214 ApdallKlg~~~~~l~-~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 214 APDALLKLGVSLGRLG-NTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred ChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCCHHH
Confidence 4555566666664 7789999999999999987766
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=68.16 E-value=68 Score=28.68 Aligned_cols=53 Identities=25% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL 98 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL 98 (526)
.....|.+ ++++.++..++..+|-+-.+|...-.++...++ ..++++.++.+-
T Consensus 71 ~~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~------------~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 71 ALLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGR------------RAEALRVYERYR 123 (146)
T ss_dssp HHHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHH
T ss_pred HHHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC------------HHHHHHHHHHHH
Confidence 35567888 899999999999999999999999999888874 567777666553
No 213
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.76 E-value=32 Score=35.70 Aligned_cols=90 Identities=18% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHH
Q 009766 15 AASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVV 94 (526)
Q Consensus 15 ~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~ 94 (526)
.+++-..+-++++.+-..+......-.+.|+...+.+|.+||++.--|--||.+..+++. +.-++.-+
T Consensus 171 L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c------------~~vAl~dl 238 (269)
T COG2912 171 LKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC------------YHVALEDL 238 (269)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC------------chhhHHHH
Confidence 344445555666665555555444444899999999999999999999999999999974 57788888
Q ss_pred HHHHHhCCCChHHHHHHHHHHH
Q 009766 95 ESALRQNFKSYGAWHHRKWILS 116 (526)
Q Consensus 95 e~aL~~NPKsy~AW~HRrwvL~ 116 (526)
+..+..-|+...+=.-|..+..
T Consensus 239 ~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 239 SYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHhCCCchHHHHHHHHHHH
Confidence 8888888888877666655543
No 214
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=66.70 E-value=47 Score=30.12 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=69.8
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNY---RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~---Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~ 109 (526)
....+|++ -+||++.+.++..++++-.+|.. .|.++..+.. ...+|+.-..-+...++++.++....|.+...-+
T Consensus 5 ~~~~rGnh-iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~-~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 5 DYFARGNH-IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK-KTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHccCH-HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH-hccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 34578999 89999999999999999988763 3566666653 2236666556678899999999999998844443
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHh
Q 009766 110 HRKWILSKGHSSIDNELRLLDKFQKA 135 (526)
Q Consensus 110 HRrwvL~kl~~~~eeELe~~dkaLei 135 (526)
.-.--+.-. ..|++.+.-+.+.|.+
T Consensus 83 ~la~~l~s~-~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSV-KYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHhcc
Confidence 322222111 2466777777776664
No 215
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=65.06 E-value=1.7e+02 Score=29.93 Aligned_cols=129 Identities=11% Similarity=-0.019 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHH
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~td 165 (526)
.++.+-..+.+|+...+-+|++|..-..+-.+.....+.+...++..++..|.+...|..=.-.+..++.. +..=..++
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~-~~aR~lfe 94 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI-NNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H-HHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH-HHHHHHHH
Confidence 37888899999997777789999844444344444666799999999999999998887655445556643 34445567
Q ss_pred HHHHhccCCh-hHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHH
Q 009766 166 DMICNNFSNY-SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (526)
Q Consensus 166 kaI~~nPsNy-SAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~ 225 (526)
+++..-+.+. +-=.+..++=.... ..-++.-....+++....|++.+.+.
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~----------~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESK----------YGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7777666665 33333333311111 01135555666778888888776664
No 216
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.70 E-value=5.5 Score=42.61 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~t 164 (526)
..++++++.+..+|.+||.+.....-|.-++-++. ....++.-|+.+++++|......-.|+..-..++.+. ++-...
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e-~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE-EAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHHHHhhchH-HHHHHH
Confidence 45899999999999999999999999999988875 6778999999999999999988889998888888884 666677
Q ss_pred HHHHHhccC-ChhHH
Q 009766 165 EDMICNNFS-NYSAW 178 (526)
Q Consensus 165 dkaI~~nPs-NySAW 178 (526)
..+++++.. ..++|
T Consensus 206 ~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 206 ALACKLDYDEANSAT 220 (377)
T ss_pred HHHHhccccHHHHHH
Confidence 777776643 34666
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.66 E-value=80 Score=33.28 Aligned_cols=125 Identities=13% Similarity=0.068 Sum_probs=81.3
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHh----CCCChHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPELYTA-WNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ----NFKSYGAWHHR 111 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd~ytA-WN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~----NPKsy~AW~HR 111 (526)
-|+| .=.++++.+++..||.--++ -..-+++-.+.|+ .+.+=..++.+=+. |---...-.||
T Consensus 190 ~kEy-~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD------------~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 190 MKEY-VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD------------IKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred chhh-hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc------------HHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4677 56788899999998555444 3455666666553 12222222211111 11111122233
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCCh
Q 009766 112 KWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (526)
Q Consensus 112 rwvL~kl~-~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNy 175 (526)
-..+-.++ .++.+|...+++++..||+|..|=+.+..++-.+|+. .++++-.+.+..+.|.-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-KDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH-HHHHHHHHHHhccCCccc
Confidence 22222222 4688999999999999999999999999999999887 489999999999999754
No 218
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.55 E-value=12 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 009766 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (526)
Q Consensus 107 AW~HRrwvL~kl~~~~eeELe~~dkaLeiDpr 138 (526)
+|..++.++...+ .++.+...+.++++++|.
T Consensus 3 ~~~~~a~~~~~~~-~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLG-DYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHccCCC
Confidence 4555555555442 556666666666665553
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=63.10 E-value=1.2e+02 Score=30.87 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~ 121 (526)
++|=..+.+++...+-++.+|..-..+=.+.+ .....+.++++.+++..|++...|.+=.-.+..++ .
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~-----------~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~-d 85 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCN-----------KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN-D 85 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC-----------S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-c
Confidence 67888899998666678888875544322222 23466899999999999999999987766666664 7
Q ss_pred hHHHHHHHHHHHHhCCCCh-hhhhHHHHH--HHHhCcChHHHHHHHHHHHHhccCChh
Q 009766 122 IDNELRLLDKFQKADSRNF-HAWNYRRFV--AASMNRSEEDELKYTEDMICNNFSNYS 176 (526)
Q Consensus 122 ~eeELe~~dkaLeiDprNy-hAW~yRr~l--L~~Lg~~~eeELe~tdkaI~~nPsNyS 176 (526)
.+++-.++++++..-+... ..=-+.+|+ =...|.. +.-.....++.+..|.+.+
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-ESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-HHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhhhH
Confidence 8889999999998877766 222333444 2233432 2333444555555666444
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=61.34 E-value=2.6e+02 Score=30.78 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcC
Q 009766 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (526)
Q Consensus 88 ~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~ 156 (526)
..=++..++.++.+|.++..|..-+.+..+.+ .|.++-++++.+++..| ..+.|...+.++..+|.+
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRP-SASDYAELADALDQLGEP 377 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCCh
Confidence 44455666666666666666666666665543 56666666666666665 345566666666666665
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.30 E-value=1.2e+02 Score=33.03 Aligned_cols=113 Identities=14% Similarity=0.022 Sum_probs=69.4
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHh-CCCChHHHHHHH--
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-NFKSYGAWHHRK-- 112 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~-NPKsy~AW~HRr-- 112 (526)
..|++ -+|-...+++|.-.|.+.-+|++-..+-..++. ...-...+++++-. ||.-+..=+-.+
T Consensus 115 ~~g~~-h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~------------~~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 115 GRGKH-HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN------------QIGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred ccccc-cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc------------hhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 34777 678888999999999999999998888777764 22334455555544 444432211111
Q ss_pred -HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHH
Q 009766 113 -WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (526)
Q Consensus 113 -wvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~ 163 (526)
+.|... +.|+++=+.-++++++++.+-.|=+-+.-|++.-++. .+..+|
T Consensus 182 aFgL~E~-g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~-Keg~eF 231 (491)
T KOG2610|consen 182 AFGLEEC-GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH-KEGKEF 231 (491)
T ss_pred HhhHHHh-ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh-hhHHHH
Confidence 222233 3566677777777777776555544555666655555 234444
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.96 E-value=29 Score=27.16 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh
Q 009766 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHK 72 (526)
Q Consensus 32 ~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L 72 (526)
......|+| ++|+...+.+|.+.|++.+|=.-+..+-.+.
T Consensus 9 ig~ykl~~Y-~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 9 IGHYKLGEY-EKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHTT-H-HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 456778999 8999999999999999999988877665444
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=57.60 E-value=29 Score=39.46 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHH
Q 009766 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (526)
Q Consensus 85 ~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~--~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe 162 (526)
..+..|+..+.+++..-|..--..-.|..++.+-+ +.--.+|.-|..++.+||..+.||.+-.-++..++++. ++|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~-eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL-EALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH-Hhhh
Confidence 56788999999999999988888888877665422 33346999999999999999999999999999999984 7999
Q ss_pred HHHHHHHhccCChh
Q 009766 163 YTEDMICNNFSNYS 176 (526)
Q Consensus 163 ~tdkaI~~nPsNyS 176 (526)
+-..+....|+|..
T Consensus 467 ~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 467 CHWALQMSFPTDVA 480 (758)
T ss_pred hHHHHhhcCchhhh
Confidence 99988889998864
No 224
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.84 E-value=78 Score=34.18 Aligned_cols=82 Identities=16% Similarity=0.011 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCcH----HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 009766 44 AVELSTKLLETNPELY----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH 119 (526)
Q Consensus 44 AL~lt~kaL~iNPd~y----tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~ 119 (526)
|..+|++.|..+..+. -.++.|.-+-..++ +|+..|.-|.+++.++|++..|.+.-.-++-.+.
T Consensus 100 A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~------------NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 100 AVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG------------NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH------------HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 3557777787665543 34556666666665 6999999999999999999998875556666663
Q ss_pred CChHHHHHHHHHHHHhCCC
Q 009766 120 SSIDNELRLLDKFQKADSR 138 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDpr 138 (526)
.+.+++..|+..+.+|..
T Consensus 168 -~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 168 -RFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred -HHHHHHHHHhhhhhhhHH
Confidence 677788888877666554
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=53.12 E-value=25 Score=23.02 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 009766 108 WHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (526)
Q Consensus 108 W~HRrwvL~kl~~~~eeELe~~dkaLeiDpr 138 (526)
..+.+++..+. +.++++++.++++++..|.
T Consensus 3 ~~~~a~~~~~~-g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKL-GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHc-cCHHHHHHHHHHHHHHCcC
Confidence 34444555444 2556666666666666654
No 226
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=53.08 E-value=39 Score=21.99 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCC
Q 009766 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (526)
Q Consensus 61 AWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKs 104 (526)
|....+.+...++ .+++++..++.++...|++
T Consensus 2 a~~~~a~~~~~~g------------~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLG------------DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHC------------HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcc------------CHHHHHHHHHHHHHHCcCC
Confidence 4455566666654 5899999999999999986
No 227
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.81 E-value=2e+02 Score=30.95 Aligned_cols=153 Identities=14% Similarity=0.028 Sum_probs=91.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 009766 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (526)
Q Consensus 33 ~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRr 112 (526)
..++...| .+++++...-.+.+|++-.+-..-+-+.-+.. .+..+-.|++++-...|+-.+-=.|-.
T Consensus 19 ~lI~d~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q------------~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 19 RLIRDARY-ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ------------EFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred HHHHHhhH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 44555677 78888888888999988877777777766664 578888999999999998766544444
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccC-C-hhHHHHHHHHHHHhhh
Q 009766 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS-N-YSAWHNRSLLLSNLLK 190 (526)
Q Consensus 113 wvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPs-N-ySAW~yR~~LL~~L~~ 190 (526)
.-|-+. ..+.++|.....+... .+...+..-++..-.+.++.+--+..+++.-|+ | ...-.+-+.++.+
T Consensus 86 QSLY~A-~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk--- 156 (459)
T KOG4340|consen 86 QSLYKA-CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK--- 156 (459)
T ss_pred HHHHHh-cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec---
Confidence 444444 3667777766554332 223333333333333434445555555555553 2 1222233333322
Q ss_pred hhccCccchhhhHHHHHHHHHHHHHh
Q 009766 191 RKVEGFVSKEKVLPDEYEFVHQAIFT 216 (526)
Q Consensus 191 ~~~~g~~~~~eileeELe~v~~AI~~ 216 (526)
+..+++++..++.|+..
T Consensus 157 ---------egqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 157 ---------EGQYEAAVQKFQAALQV 173 (459)
T ss_pred ---------cccHHHHHHHHHHHHhh
Confidence 23366677777666654
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=50.65 E-value=3.7e+02 Score=29.34 Aligned_cols=178 Identities=11% Similarity=0.082 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHH-HHHhCCC
Q 009766 29 SQFLHNHHNHIYSKEAVELSTKLLET----NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVES-ALRQNFK 103 (526)
Q Consensus 29 ~~~~~~~~~geyseEAL~lt~kaL~i----NPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~-aL~~NPK 103 (526)
+.+++.|+-++| +.++.+.+.+=.+ -++...+=.....+|.+... .+..++++..+.. +....+.
T Consensus 146 ~lllSyRdiqdy-damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~---------~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 146 NLLLSYRDIQDY-DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK---------PGDREKALQILLPVLESDENP 215 (374)
T ss_pred HHHHHhhhhhhH-HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhccCCC
Confidence 456677777888 6677776665544 33333333344444444221 1356899999988 4455666
Q ss_pred ChHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcC--hHHHHHHHH----HHH-
Q 009766 104 SYGAWHHRKWILSKGH--------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS--EEDELKYTE----DMI- 168 (526)
Q Consensus 104 sy~AW~HRrwvL~kl~--------~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~--~eeELe~td----kaI- 168 (526)
+...+--.+-+...+. ..+++++..|.++.+++|.-|+. -+-..++...|.. ...|+.-+- ..+
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 6776765555554321 24779999999999999654444 4444455444432 122443322 111
Q ss_pred Hhc--cCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 009766 169 CNN--FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (526)
Q Consensus 169 ~~n--PsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL 231 (526)
+.. -...+-|-+-..+=-.+. .+-++.++....+++...|. +| |..-.+
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL----------~~d~~ka~~a~e~~~~l~~~---~W-~l~St~ 345 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVL----------AGDYEKAIQAAEKAFKLKPP---AW-ELESTL 345 (374)
T ss_pred hhccccccccHHHHHHHHHHHHH----------cCCHHHHHHHHHHHhhcCCc---ch-hHHHHH
Confidence 111 122344544333311111 01157788888888887654 78 444433
No 229
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=47.20 E-value=1.4e+02 Score=30.25 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=54.0
Q ss_pred HHHHHHHHHh----hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCC-----chhhhhHHHHHHHHHH
Q 009766 26 VLQSQFLHNH----HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP-----DSLKSILDEELRVVES 96 (526)
Q Consensus 26 ~l~~~~~~~~----~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdP-----e~~~~~~~eEL~~~e~ 96 (526)
.+.+.+.... ..+.+ ++++..+..++.++|..+.+|.+-+.....+.......+ +....-...++..|-+
T Consensus 256 l~~a~w~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~ 334 (352)
T PF02259_consen 256 LLLAKWLDELYSKLSSESS-DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLK 334 (352)
T ss_pred HHHHHHHHhhccccccccH-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 3444444443 44555 789999999999999999999998887777753211111 1234556778888888
Q ss_pred HHHhCCC
Q 009766 97 ALRQNFK 103 (526)
Q Consensus 97 aL~~NPK 103 (526)
++...++
T Consensus 335 al~~~~~ 341 (352)
T PF02259_consen 335 ALSLGSK 341 (352)
T ss_pred HHhhCCC
Confidence 8888887
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=46.44 E-value=34 Score=23.86 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHH--HhCCCC
Q 009766 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI--FTDPDD 220 (526)
Q Consensus 177 AW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI--~~dP~D 220 (526)
||.+.+.+...++. ++++++++.+++ ..+|++
T Consensus 1 al~~Lg~~~~~~g~------------~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD------------YEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCC------------HHHHHHHHHHHHHhcccccC
Confidence 56777777777665 799999999944 555554
No 231
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=45.90 E-value=37 Score=31.85 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009766 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRK 66 (526)
Q Consensus 10 ~~e~~~~~~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr 66 (526)
+.++..+--+|.|-+|+++...+.+.+. +.|=.+|..++..+|+|..+---.-
T Consensus 65 ~kk~ktk~DeY~EaLRDfq~~~iaKle~----e~Ae~vY~el~~~~P~HLpaHla~i 117 (139)
T PF12583_consen 65 PKKDKTKWDEYSEALRDFQCSWIAKLEP----ENAEQVYEELLEAHPDHLPAHLAMI 117 (139)
T ss_dssp -------HHHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHHHH-TT-THHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHhhCH----HHHHHHHHHHHHHCcchHHHHHHHH
Confidence 3445555566888888888777766544 6678899999999999999654443
No 232
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.19 E-value=93 Score=33.48 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHH
Q 009766 48 STKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELR 127 (526)
Q Consensus 48 t~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe 127 (526)
+-..-...|.+.+.|..--.-+.+.+ .|.+=-..|..||+.+|.|...|-+-+-.-....+.++..-+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k------------~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra 163 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKK------------MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRA 163 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHH
Confidence 34444567888888875444444443 355556789999999999999998743322222257888889
Q ss_pred HHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHh
Q 009766 128 LLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (526)
Q Consensus 128 ~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~ 170 (526)
.+.+.|.++|++.--|.-- -.-||.|.+++|..
T Consensus 164 ~f~~glR~N~~~p~iw~ey----------fr~El~yiTKL~~R 196 (435)
T COG5191 164 MFLKGLRMNSRSPRIWIEY----------FRMELMYITKLINR 196 (435)
T ss_pred HHHhhhccCCCCchHHHHH----------HHHHHHHHHHHHhh
Confidence 9999999999999888521 12478888887743
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=4.7e+02 Score=28.87 Aligned_cols=76 Identities=14% Similarity=-0.005 Sum_probs=45.7
Q ss_pred cCCCcHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009766 37 NHIYSKEAVELSTKLLETNPE---LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (526)
Q Consensus 37 ~geyseEAL~lt~kaL~iNPd---~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrw 113 (526)
+++| +.|+.+.+-.+...-+ ....|. +.+-.+++ +|++++..+..+...+--+...|.+-.-
T Consensus 35 ~rDy-tGAislLefk~~~~~EEE~~~~lWi--a~C~fhLg------------dY~~Al~~Y~~~~~~~~~~~el~vnLAc 99 (557)
T KOG3785|consen 35 NRDY-TGAISLLEFKLNLDREEEDSLQLWI--AHCYFHLG------------DYEEALNVYTFLMNKDDAPAELGVNLAC 99 (557)
T ss_pred cccc-hhHHHHHHHhhccchhhhHHHHHHH--HHHHHhhc------------cHHHHHHHHHHHhccCCCCcccchhHHH
Confidence 3456 4566665555533322 334443 33445554 5788888888888777677777887777
Q ss_pred HHHhCCCChHHHHHH
Q 009766 114 ILSKGHSSIDNELRL 128 (526)
Q Consensus 114 vL~kl~~~~eeELe~ 128 (526)
+...++ .|.++-..
T Consensus 100 c~FyLg-~Y~eA~~~ 113 (557)
T KOG3785|consen 100 CKFYLG-QYIEAKSI 113 (557)
T ss_pred HHHHHH-HHHHHHHH
Confidence 776663 55554443
No 234
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.48 E-value=2e+02 Score=30.07 Aligned_cols=68 Identities=18% Similarity=0.038 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHHhCCCChhhhhHHH
Q 009766 89 EELRVVESALRQNFKSYGAWHHRKWILSKGH---------------------SSIDNELRLLDKFQKADSRNFHAWNYRR 147 (526)
Q Consensus 89 eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~---------------------~~~eeELe~~dkaLeiDprNyhAW~yRr 147 (526)
+-+..++.=+..+|+||++|.-++....+.. ...+.+...+-++++++||-..|...-.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4567778888999999998766655544321 0246888899999999999999988877
Q ss_pred HHHHHhCcC
Q 009766 148 FVAASMNRS 156 (526)
Q Consensus 148 ~lL~~Lg~~ 156 (526)
-+...+|.+
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 777788765
No 235
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.19 E-value=42 Score=35.95 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 009766 38 HIYSKEAVELSTKLLETNPELYTAWNYR-KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (526)
Q Consensus 38 geyseEAL~lt~kaL~iNPd~ytAWN~R-r~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~ 109 (526)
|-| .+.=+.+.++|.++|.+...|.+- ..-+... ..++.....+.+.|+.||.++-.|.
T Consensus 121 k~y-~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~------------ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 121 KMY-GEMKNIFAECLTKHPLNVDLWIYCCAFELFEI------------ANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHH-HHHHHHHHHHHhcCCCCceeeeeeccchhhhh------------ccHHHHHHHHHhhhccCCCCchHHH
Confidence 345 678889999999999999999872 2212222 2578888999999999999999996
No 236
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.67 E-value=95 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHHHhCCCChhhh
Q 009766 121 SIDNELRLLDKFQKADSRNFHAW 143 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW 143 (526)
.|++++.+++.+|+++|.|-.|=
T Consensus 16 ~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 16 EYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp -HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHHHhhCCCcHHHH
Confidence 56666666666666666665553
No 237
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.57 E-value=2.4e+02 Score=30.53 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHH
Q 009766 18 AAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVV 94 (526)
Q Consensus 18 ~~~~ek~r~l~~~~~~~~~~geyseEAL~lt~kaL~iNPd~---ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~ 94 (526)
..-++++-..++-++.....|...++.+...+.++..-|+. ...|.++.+++...+ .+++-+.+|
T Consensus 96 ~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~------------~~e~vi~iy 163 (353)
T PF15297_consen 96 RLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTG------------PIEDVIAIY 163 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC------------CHHHHHHHH
Confidence 34888899999999999999999999999999999988864 578999999887765 256778999
Q ss_pred HHHHHhCCC
Q 009766 95 ESALRQNFK 103 (526)
Q Consensus 95 e~aL~~NPK 103 (526)
+.|+.....
T Consensus 164 EeAi~agAq 172 (353)
T PF15297_consen 164 EEAILAGAQ 172 (353)
T ss_pred HHHHHcCCC
Confidence 988876543
No 238
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.76 E-value=2.9e+02 Score=30.37 Aligned_cols=116 Identities=15% Similarity=0.014 Sum_probs=78.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC-------------------------CC----------
Q 009766 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS-------------------------DP---------- 80 (526)
Q Consensus 36 ~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~s-------------------------dP---------- 80 (526)
+-|+| ++||+.|+.+...+--....|.+-..+..-++.+.++ |.
T Consensus 69 hLgdY-~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 69 HLGDY-EEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred hhccH-HHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 55888 8999999999988888888888877776666644221 00
Q ss_pred -----c--------hhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHH
Q 009766 81 -----D--------SLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRR 147 (526)
Q Consensus 81 -----e--------~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr 147 (526)
+ .....|+++++.+.++|.-||.--..=.+-..+.-++. -|+-.-+.++-.|...|..--|-+-+.
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 0 01256888889998888877654443344455555663 556666677777888888777766665
Q ss_pred HHHHHh
Q 009766 148 FVAASM 153 (526)
Q Consensus 148 ~lL~~L 153 (526)
..+-++
T Consensus 227 cn~fRl 232 (557)
T KOG3785|consen 227 CNLFRL 232 (557)
T ss_pred HHHhhh
Confidence 554444
No 239
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.13 E-value=58 Score=34.93 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHH
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~ 183 (526)
..+++..+++.++.++|+|..+..--+...+.-+.. -++=+||.+++.++|+|..|..+|.-
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i-v~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI-VEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh-HhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345555555555555555555544444333332222 13344555555555555555555543
No 240
>PRK04841 transcriptional regulator MalT; Provisional
Probab=32.09 E-value=8.9e+02 Score=28.38 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=75.0
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCC----Ch
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELY-----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK----SY 105 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~y-----tAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPK----sy 105 (526)
...|++ +++......++...|... .+++..+.+....+ .+++++..++.++..... ..
T Consensus 463 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G------------~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 463 INDGDP-EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG------------ELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HhCCCH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHhhhcchHH
Confidence 357888 889999999998666533 23344444444443 578888888888865332 11
Q ss_pred H--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC--------hhhhhHHHHHHHHhCcChHHHHHHHHHHHHh
Q 009766 106 G--AWHHRKWILSKGHSSIDNELRLLDKFQKADSRN--------FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (526)
Q Consensus 106 ~--AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprN--------yhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~ 170 (526)
. +......+.... +.++++..++++++..-... ..++...+.+....|.+. ++.+.+.+++..
T Consensus 530 ~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~-~A~~~~~~al~~ 602 (903)
T PRK04841 530 ALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD-EAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH-HHHHHHHHhHHh
Confidence 1 222233343334 47889999998888753221 122334555666668774 788888888775
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=3.9e+02 Score=29.31 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCChhhhhHH----HHHHHHhCcChHHH
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA-DSRNFHAWNYR----RFVAASMNRSEEDE 160 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLei-DprNyhAW~yR----r~lL~~Lg~~~eeE 160 (526)
.+.++-..-+++|...|++--||..---.-..++ ....-...+++++-. ++ +..+..|- .|.+...|.+. ++
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G-~~~~~k~ai~kIip~wn~-dlp~~sYv~GmyaFgL~E~g~y~-dA 194 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG-NQIGKKNAIEKIIPKWNA-DLPCYSYVHGMYAFGLEECGIYD-DA 194 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc-chhhhhhHHHHhccccCC-CCcHHHHHHHHHHhhHHHhccch-hH
Confidence 4566667788999999999999975544444443 444556667776665 33 33344443 45677778885 45
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 009766 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (526)
Q Consensus 161 Le~tdkaI~~nPsNySAW~yR~~LL~~L~~ 190 (526)
=+..++++++|+.|-.|=|-+..+++.-++
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 556799999999999988888888886554
No 242
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=5.8e+02 Score=29.61 Aligned_cols=103 Identities=15% Similarity=-0.065 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHH
Q 009766 29 SQFLHNHHNHIY-SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA 107 (526)
Q Consensus 29 ~~~~~~~~~gey-seEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~A 107 (526)
..|+....+.-- +..+.-....+|..||++..+-+.-...++..+ ..+.-...+.+.+...-|++-..
T Consensus 70 a~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~-----------~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 70 AAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG-----------LQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred HHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHhcCcchHHH
Confidence 333444443222 246777788888899998888887777766644 24566677888899999999999
Q ss_pred HHHH------HHHHHhCCCChHHHHHHHHHHHHhCCCChhhh
Q 009766 108 WHHR------KWILSKGHSSIDNELRLLDKFQKADSRNFHAW 143 (526)
Q Consensus 108 W~HR------rwvL~kl~~~~eeELe~~dkaLeiDprNyhAW 143 (526)
-.|+ +-++.-++ ...+......++.++.|+|.+.-
T Consensus 139 ~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 139 LGHLIRFYQLGRYLKLLG-RTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HhhHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhhhhhhH
Confidence 9999 44444443 56677778888888988885443
No 243
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.59 E-value=1.8e+02 Score=24.87 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCC
Q 009766 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (526)
Q Consensus 159 eELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~D 220 (526)
.+++...+.+..||.|..+.+.....+..-+. ++++++.+..++..+|+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~------------~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGD------------YEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCccc
Confidence 36777888999999999998888877665543 677888888888777765
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=1.6e+02 Score=30.86 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=41.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPK 103 (526)
...|+| -++++-+..+|...|.+..|...|..+-..-.+ ..++-+-+..+|+.+|.
T Consensus 241 L~~~e~-yevleh~seiL~~~~~nvKA~frRakAhaa~Wn------------~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 241 LKKEEY-YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN------------EAEAKADLQKVLELDPS 296 (329)
T ss_pred hhHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC------------HHHHHHHHHHHHhcChh
Confidence 345667 689999999999999999999988876554442 35666666777777763
No 245
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=26.97 E-value=9.8e+02 Score=28.43 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH----hCCC
Q 009766 45 VELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS----KGHS 120 (526)
Q Consensus 45 L~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~----kl~~ 120 (526)
+-+.+.+|..||.+..-|..|-.+...... +.=.-+++.+...|||-...=-|+.|+-. ...+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~-------------~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAA-------------EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChH-------------HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Q ss_pred ChHHHHHHHHHHHHhC-------------------------------------CCChh-------------------hhh
Q 009766 121 SIDNELRLLDKFQKAD-------------------------------------SRNFH-------------------AWN 144 (526)
Q Consensus 121 ~~eeELe~~dkaLeiD-------------------------------------prNyh-------------------AW~ 144 (526)
.++.+-..++++++.. |++-+ .|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Q ss_pred HHHHHHHHhCc---------------------------------ChHHHHHHHHHHHH--hccCChhHHH-HHHHHHHHh
Q 009766 145 YRRFVAASMNR---------------------------------SEEDELKYTEDMIC--NNFSNYSAWH-NRSLLLSNL 188 (526)
Q Consensus 145 yRr~lL~~Lg~---------------------------------~~eeELe~tdkaI~--~nPsNySAW~-yR~~LL~~L 188 (526)
+-.-+.+.+|. +-++.++.+++-|. .-|.-+..|+ |.-..+.++
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Q ss_pred hhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 009766 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (526)
Q Consensus 189 ~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~ 229 (526)
+. ..++.+-+++.+|+...|...+--.|+..
T Consensus 562 gg----------~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 562 GG----------TKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred cC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
No 246
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.45 E-value=7.8e+02 Score=25.95 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcCh-HHHHHHHHHHHHhccCChhHHHH
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELKYTEDMICNNFSNYSAWHN 180 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~-eeELe~tdkaI~~nPsNySAW~y 180 (526)
.|-+.++-|..+|..+|.|.-|..-|+-.- .+.|. .++=+-+.++++.+|+-.|+-.-
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAh--aa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAH--AAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHH--HhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 566788888888888888888877776543 33332 23445668888888887776443
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=26.25 E-value=4.6e+02 Score=23.22 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHH
Q 009766 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdk 166 (526)
+.+++++..+.+++..||-|-.+|....-++...|... ++++.+.+
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~-~A~~~Y~~ 121 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA-EALRVYER 121 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH-HHHHHHHH
Confidence 36788888888888888888888888888888888763 56666554
No 248
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.07 E-value=1.7e+02 Score=30.28 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHccccCCC
Q 009766 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVD 238 (526)
Q Consensus 159 eELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~~~~~e 238 (526)
...+.+.++++.-|...-.|+-.+..-.+-+. .+.+...+.+++++||.|.-+=--+.-++++...++
T Consensus 13 aaaely~qal~lap~w~~gwfR~g~~~ekag~------------~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~ 80 (287)
T COG4976 13 AAAELYNQALELAPEWAAGWFRLGEYTEKAGE------------FDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPE 80 (287)
T ss_pred HHHHHHHHHhhcCchhhhhhhhcchhhhhccc------------HHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCC
Confidence 45666777777777777777655554333322 466777778888888888777777777777655555
Q ss_pred CCc
Q 009766 239 SPQ 241 (526)
Q Consensus 239 ~~~ 241 (526)
.|.
T Consensus 81 ~pP 83 (287)
T COG4976 81 KPP 83 (287)
T ss_pred CCc
Confidence 443
No 249
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=25.85 E-value=1.6e+02 Score=18.66 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009766 42 KEAVELSTKLLETNPELYTAWNYRKL 67 (526)
Q Consensus 42 eEAL~lt~kaL~iNPd~ytAWN~Rr~ 67 (526)
+++-.+++++|...|.+..+|..--.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 67888999999999999999986543
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=25.51 E-value=7.1e+02 Score=25.12 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc-----cchhhhHHHHHHHHHHHHHhCCC
Q 009766 158 EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF-----VSKEKVLPDEYEFVHQAIFTDPD 219 (526)
Q Consensus 158 eeELe~tdkaI~~nPsNySAW~yR~~LL~~L~~~~~~g~-----~~~~eileeELe~v~~AI~~dP~ 219 (526)
++.+..+.++++.+|+++.+|++-+.....+......+. ....+....++.+|-+++...|.
T Consensus 275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 457889999999999999999999999888875432111 13445678899999999999888
No 251
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=25.30 E-value=40 Score=28.29 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCCCcchHHHHHHHHHhhccCcchhhhhhchhhhhhhh
Q 009766 472 ANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQ 509 (526)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (526)
.++.++++||+.+|...+.+==..-.|++|+...-.+.
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r 53 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLR 53 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 35678899999999987766555667777776654443
No 252
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=2.9e+02 Score=28.82 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 009766 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (526)
Q Consensus 121 ~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~tdkaI~~nPsNySAW~yR~~LL 185 (526)
.++.++.+.++.+.++|.+...|.-|+.+...++-+ .-+++.+...++.-|++..+=.-|..+.
T Consensus 196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~-~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY-HVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc-hhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 578899999999999999999999999999999887 3688888888999999988766665543
No 253
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=22.51 E-value=3.4e+02 Score=24.68 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccCChhHHHHH---HHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 159 DELKYTEDMICNNFSNYSAWHNR---SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 159 eELe~tdkaI~~nPsNySAW~yR---~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
++|+-++++|..+.++.++|... |.++..+... .+....+...+...++++.++..+.|.-...-
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-TENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-ccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 68888888888888888876432 3444444432 11122344457889999999999999875444
No 254
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.97 E-value=9.6e+02 Score=25.41 Aligned_cols=69 Identities=7% Similarity=0.046 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcC
Q 009766 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (526)
Q Consensus 87 ~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~ 156 (526)
++++.-+++..-...|..+-.-++..-+--.+ ++|+++...+..+|..|++.+.+-.+-.-+....|..
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 45555555555554444444444433332223 3566666666666666666666666555555555555
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=21.96 E-value=1.2e+03 Score=26.77 Aligned_cols=138 Identities=16% Similarity=0.188 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHH
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~td 165 (526)
...+|+ -+..-|+.||.|-..|..-..-+.-. +.++++-+.++.+..--|---|||. +...|....+++..++
T Consensus 24 i~~D~l-rLRerIkdNPtnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pfp~~~~aw~-----ly~s~ELA~~df~svE 96 (660)
T COG5107 24 IHGDEL-RLRERIKDNPTNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPFPIMEHAWR-----LYMSGELARKDFRSVE 96 (660)
T ss_pred CCchHH-HHHHHhhcCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCCccccHHHH-----HHhcchhhhhhHHHHH
Confidence 456777 56667888999999998655555433 4788899999998777776667764 4333332233444444
Q ss_pred HHHHh---ccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHhCCCCcccHHHHHHHHcc
Q 009766 166 DMICN---NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (526)
Q Consensus 166 kaI~~---nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v~~AI~~dP~DeSaW~Y~r~LL~~ 233 (526)
..+.. -.-|-+.|.-----+.+.. ..+.....-.+-++.+++..-+-.+|...+.|.-....|.+
T Consensus 97 ~lf~rCL~k~l~ldLW~lYl~YIRr~n---~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 97 SLFGRCLKKSLNLDLWMLYLEYIRRVN---NLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred HHHHHHHhhhccHhHHHHHHHHHHhhC---cccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 44332 2334677753322223222 11212333446789999999888899999999855555543
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.63 E-value=7.6e+02 Score=25.68 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH---hCcChHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHhhhhhc
Q 009766 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS---MNRSEEDELKYTEDMICNNFSNY---SAWHNRSLLLSNLLKRKV 193 (526)
Q Consensus 120 ~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~---Lg~~~eeELe~tdkaI~~nPsNy---SAW~yR~~LL~~L~~~~~ 193 (526)
++|..+...|...++..|++-.+=+=+-|+-+. .+.+ +++-..+-..++..|+.. .+..-.+.++..+++
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~--- 230 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-EDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN--- 230 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-hHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC---
Confidence 468899999999999999888777777777654 3666 477788888888877765 346666666666654
Q ss_pred cCccchhhhHHHHHHHHHHHHHhCCCCcccH
Q 009766 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (526)
Q Consensus 194 ~g~~~~~eileeELe~v~~AI~~dP~DeSaW 224 (526)
-+++-..+.+++..+|+..++=
T Consensus 231 ---------~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 231 ---------TDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ---------HHHHHHHHHHHHHHCCCCHHHH
Confidence 3778888899999999877653
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.63 E-value=1.3e+03 Score=26.66 Aligned_cols=176 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhh
Q 009766 13 DAAASAAKAEKLRVLQSQFLHNHH-------NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKS 85 (526)
Q Consensus 13 ~~~~~~~~~ek~r~l~~~~~~~~~-------~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~ 85 (526)
+.+++++..+.+|.-+-.+-.=+. ++++ .+|-..++.+|..+..+.+.|-.-..+=.+..
T Consensus 55 q~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~-~RARSv~ERALdvd~r~itLWlkYae~Emknk------------ 121 (677)
T KOG1915|consen 55 QLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEI-QRARSVFERALDVDYRNITLWLKYAEFEMKNK------------ 121 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcccccchHHHHHHHHHHhhh------------
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHhCcChHHHHHHHH
Q 009766 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (526)
Q Consensus 86 ~~~eEL~~~e~aL~~NPKsy~AW~HRrwvL~kl~~~~eeELe~~dkaLeiDprNyhAW~yRr~lL~~Lg~~~eeELe~td 165 (526)
.+..+-.+.++++..=|.--+.|+--...-..++ +...+-..+++.++-.| .-.||.--.-.=-+.+.. +.+=..+.
T Consensus 122 ~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg-Ni~gaRqiferW~~w~P-~eqaW~sfI~fElRykei-eraR~IYe 198 (677)
T KOG1915|consen 122 QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG-NIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEI-ERARSIYE 198 (677)
T ss_pred hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHH-HHHHHHHH
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHH
Q 009766 166 DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFV 210 (526)
Q Consensus 166 kaI~~nPsNySAW~yR~~LL~~L~~~~~~g~~~~~eileeELe~v 210 (526)
+.+-.||.-..---|-.+=..+-.- .....+|+.+++.+
T Consensus 199 rfV~~HP~v~~wikyarFE~k~g~~------~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 199 RFVLVHPKVSNWIKYARFEEKHGNV------ALARSVYERAIEFL 237 (677)
T ss_pred HHheecccHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHh
No 258
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.37 E-value=7e+02 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHHHHHHHH---HHHHHHhhcCCCcHHHHHHHHHHHHhCCC
Q 009766 20 KAEKLRVLQ---SQFLHNHHNHIYSKEAVELSTKLLETNPE 57 (526)
Q Consensus 20 ~~ek~r~l~---~~~~~~~~~geyseEAL~lt~kaL~iNPd 57 (526)
-.++++.++ ..+...+.+|+| +.++..|.++-.+--+
T Consensus 79 ~l~r~~flF~LP~~L~~~i~~~dy-~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 79 FLQRNRFLFNLPSNLRECIKKGDY-DQAINDYKKAKSLFEK 118 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCcH-HHHHHHHHHHHHHHHH
Confidence 445555555 446788899999 7888888887765443
No 259
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.03 E-value=2e+03 Score=28.36 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=63.8
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCCchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 009766 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (526)
Q Consensus 35 ~~~geyseEAL~lt~kaL~iNPd~ytAWN~Rr~vL~~L~~~~~sdPe~~~~~~~eEL~~~e~aL~~NPKsy~AW~HRrwv 114 (526)
++..+-.++|-+++..+++..-.-..+|..-...|.... .-+.+-.++.+||+.=||.-|.=.-+.+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n------------e~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN------------EAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc------------HHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 333333367888888888888877788876666655543 13555667777777778754444334333
Q ss_pred HH-hCCCChHHHHHHHHHHHHhCCCChhhhh
Q 009766 115 LS-KGHSSIDNELRLLDKFQKADSRNFHAWN 144 (526)
Q Consensus 115 L~-kl~~~~eeELe~~dkaLeiDprNyhAW~ 144 (526)
.- .-.+..++.-.+++-.+.-+|+--..|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHH
Confidence 22 1124667777888888888888888886
Done!