BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009767
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 20/188 (10%)
Query: 18 SDEPGGKDITFKRILLNHCQEAFE--GADN-----TRAEIRQMTAPEQEMERMDQ----E 66
+D+PG + F+++LLN CQ+ FE AD+ + E+ +APE+ D+ +
Sbjct: 81 ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAK 139
Query: 67 RLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIG 126
+ R++GNI+ IGEL K K + E I H V +LL+N EE++E +C+ TIG
Sbjct: 140 DKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHD-----EESLECLCRLLTTIG 194
Query: 127 KQLD-ENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKT 185
K LD E K R D YF++ +++ + R+RF + DV+DLR NWV RR + KT
Sbjct: 195 KDLDFEKAKPR--XDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCNWVSRRADQGPKT 252
Query: 186 ITEIHSEA 193
I +IH EA
Sbjct: 253 IEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|F Chain F, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|F Chain F, Crystal Structure Of A Translation Initiation Complex
Length = 284
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 1 MYALLCSDLNEKLPPFPSDEPG-GKDITFKRILLNH----CQEAFEGADNTRAEIRQMTA 55
MYA LC + ++L P +DE GK T +++L++ C F+ + +
Sbjct: 95 MYAQLCGKVVKELNPDITDETNEGK--TGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGT 152
Query: 56 PEQEMERMDQERLV----KLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPA 111
P E E M +E K R LG +R IG L + ++ K++ + L++ D P+
Sbjct: 153 P-LEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMK-DLTDSPS 210
Query: 112 EENVEAICQFFNTIGKQLDENP--------KSRRVNDVYFSRLKELTTNSQLVPRLRFMI 163
EE +E++ + NT+G+Q + + + ++ D F L + +++ R++F +
Sbjct: 211 EETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKL 270
Query: 164 HDVLDLRAN-NW 174
D+ +LR + NW
Sbjct: 271 IDIKELRHDKNW 282
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi
pdb|1UG3|B Chain B, C-Terminal Portion Of Human Eif4gi
Length = 339
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 360 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQL 419
+L KK+ +++EEY + + EA+QCV+EL +P+ V+ + LE+ E + QL
Sbjct: 9 ELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQL 68
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMV 463
L LL L+T G L +D+ ID+P E+V
Sbjct: 69 LHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELV 112
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 67
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 103
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 275
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 276 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 311
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 356 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEP 415
L+ K +++EYF +E + + +L V A++LALE E
Sbjct: 48 LDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREM 107
Query: 416 VIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 467
+LL L V++T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 108 TSKLLSDLCG-TVMSTNDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 158
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4
Length = 129
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 6 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 65
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 66 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 101
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 179 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDL 238
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 239 LKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHS 274
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLL 420
K +++EYF +E + + +L V A++LALE E +LL
Sbjct: 16 FEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLL 75
Query: 421 EFLLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 467
L V++T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 76 SDLCG-TVMSTTDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 121
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed
Cell Death 4
Length = 137
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDL 67
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHS 103
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4
Length = 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 14 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 73
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 74 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 109
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 131
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 9 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 68
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 69 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 104
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
pdb|2IOL|B Chain B, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
Length = 150
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI LE + ++ L
Sbjct: 8 LVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKXILDL 67
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITIDQXKRGYERIYNEIPDINLDVPHS 103
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA C++EL P +H E+V EAI LE + ++ L
Sbjct: 165 LVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIXVLESTGESTFKXILDL 224
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T G + + DI +D+P +
Sbjct: 225 LKSLWKSSTITVDQXKRGYERIYNEIPDINLDVPHS 260
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 3
Length = 150
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 419
L K+ LL+EY + EA ++EL P +H E+V EAI + LE + ++ L
Sbjct: 8 LVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 67
Query: 420 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455
L+ L + +T + G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 103
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 360 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQ 418
+L K T +++ EY + +EA+ V E+RAP + PE++ + I L+L++ E
Sbjct: 10 ELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASS 69
Query: 419 LLEFLLNKNVLTTRDIGTGCLLYGSLLDD---IGIDLPKAPNNFGEMVGKLVVAK 470
L+ L + + T+ + L ++LD + +D+P + + + ++++
Sbjct: 70 LISLLKQEGIATSDNFMQAFL---NVLDQCPKLEVDIPLVKSYLAQFAARAIISE 121
>pdb|3TL4|X Chain X, Crystal Structure Of The Trna Binding Domain Of
Glutaminyl-Trna Synthetase From Saccharomyces Cerevisiae
Length = 187
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 114 NVEAICQFFNTIG---KQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR 170
+VE + Q F+ +G K++ E K+++V+D + +KE ++ Q R ++H++
Sbjct: 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFV 62
Query: 171 ANNWVPRRE 179
+P+ E
Sbjct: 63 KGTDLPKSE 71
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 163
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 368 LLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKN 427
+++EYF +E + + +L V A++LALE E +LL L
Sbjct: 16 IIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-T 74
Query: 428 VLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 467
V++T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 75 VMSTTDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 114
>pdb|2RG8|A Chain A, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
pdb|2RG8|B Chain B, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
Length = 165
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLL 420
K +++EYF +E + + +L V A++LALE E +LL
Sbjct: 9 FEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLL 68
Query: 421 EFLLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 467
L V +T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 69 SDLCG-TVXSTTDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 114
>pdb|3TYW|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|C Chain C, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|D Chain D, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|4FXB|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
pdb|4FXB|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
Length = 417
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 80 IGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDE 131
+ ELL+ V + I + E +E G+T PA++ V A+ N +Q D+
Sbjct: 286 VDELLRVLSVADSIPLRVAAEDIELSGRTVPADDGVIALLAGANHDPEQFDD 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,750,350
Number of Sequences: 62578
Number of extensions: 540442
Number of successful extensions: 1309
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 23
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)