Query 009767
Match_columns 526
No_of_seqs 267 out of 735
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 9.7E-43 3.3E-47 348.5 14.2 184 1-193 65-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 7E-38 2.4E-42 317.1 17.6 174 1-176 95-284 (284)
3 2i2o_A EIF4G-like protein; pro 100.0 2.6E-38 8.8E-43 309.4 8.7 150 1-179 56-213 (224)
4 3rk6_A Polyadenylate-binding p 100.0 3E-35 1E-39 289.5 11.6 147 1-170 78-234 (234)
5 2rg8_A Programmed cell death p 100.0 3.3E-33 1.1E-37 261.0 14.3 157 353-511 1-157 (165)
6 2ion_A PDCD4, programmed cell 100.0 1.5E-32 5E-37 253.2 11.1 137 357-496 4-141 (152)
7 2nsz_A Programmed cell death p 100.0 1.2E-31 4E-36 240.9 11.5 124 357-480 2-126 (129)
8 1ug3_A EIF4GI, eukaryotic prot 100.0 1.2E-29 4E-34 262.9 9.9 159 354-512 3-162 (339)
9 2zu6_B Programmed cell death p 100.0 1.6E-28 5.5E-33 250.4 12.5 137 355-496 159-296 (307)
10 3eiq_C Programmed cell death p 99.9 3.5E-28 1.2E-32 252.2 9.8 149 353-503 45-193 (358)
11 3eiq_C Programmed cell death p 99.9 1.2E-27 4.2E-32 248.1 13.4 136 356-496 211-347 (358)
12 3l6a_A Eukaryotic translation 99.9 3.7E-27 1.3E-31 245.9 14.9 154 356-513 6-160 (364)
13 2zu6_B Programmed cell death p 99.9 8.1E-28 2.8E-32 245.3 9.3 144 360-505 1-144 (307)
14 1uw4_B UPF2, regulator of nons 99.5 3.5E-14 1.2E-18 139.7 11.4 128 68-196 96-243 (248)
15 1h2v_C 80 kDa nuclear CAP bind 97.7 0.00015 5.1E-09 82.2 11.8 106 69-176 101-227 (771)
16 4g26_A Pentatricopeptide repea 63.0 25 0.00086 37.2 9.6 68 365-432 29-105 (501)
17 1juq_A ADP-ribosylation factor 46.0 54 0.0018 29.7 7.5 92 75-175 32-131 (171)
18 4fu3_A Regulation of nuclear P 44.4 68 0.0023 27.3 7.6 124 354-483 2-128 (135)
19 3l39_A Putative PHOU-like phos 38.6 2.5E+02 0.0084 26.2 11.6 81 363-451 40-123 (227)
20 4b8b_A General negative regula 38.5 1.7E+02 0.006 31.7 11.0 89 359-447 445-543 (603)
21 3g2s_A C-terminal fragment of 36.9 97 0.0033 27.4 7.5 104 75-193 30-141 (149)
22 3rjo_A Endoplasmic reticulum a 36.1 1.4E+02 0.0049 30.4 9.8 135 364-504 253-390 (419)
23 4g26_A Pentatricopeptide repea 35.1 59 0.002 34.3 6.8 83 364-447 107-190 (501)
24 1x5b_A Signal transducing adap 34.1 1.7E+02 0.0058 26.1 8.8 91 75-175 34-128 (163)
25 3b2a_A TON_1937, putative unch 33.4 3.4E+02 0.012 26.3 11.0 99 369-476 12-112 (265)
26 3spa_A Mtrpol, DNA-directed RN 32.4 64 0.0022 37.7 6.8 86 366-451 169-265 (1134)
27 3ldz_A STAM-1, signal transduc 25.9 3.2E+02 0.011 23.5 9.6 87 75-172 24-114 (140)
28 3k6c_A Uncharacterized protein 25.5 2.8E+02 0.0095 22.7 7.8 61 354-425 11-73 (95)
29 4fke_A Aminopeptidase N; zinc 24.7 3.7E+02 0.013 30.5 11.5 134 365-504 745-883 (909)
30 3us6_A Histidine-containing ph 24.5 2E+02 0.007 25.2 7.4 47 357-403 2-51 (153)
31 1h2v_C 80 kDa nuclear CAP bind 24.5 5.1E+02 0.018 28.9 12.3 49 405-455 96-145 (771)
32 1mhq_A ADP-ribosylation factor 24.2 1.3E+02 0.0043 26.5 5.9 104 75-193 20-131 (148)
33 3kh1_A Predicted metal-depende 22.9 4.3E+02 0.015 24.3 9.6 52 414-472 141-198 (200)
34 3cz6_A DNA-binding protein RAP 22.5 3E+02 0.01 24.8 7.9 62 357-425 42-105 (168)
35 1yoz_A Hypothetical protein AF 21.1 52 0.0018 27.4 2.4 93 363-465 11-111 (116)
36 2v75_A Nuclear polyadenylated 20.7 1.2E+02 0.0043 24.9 4.6 54 456-509 28-83 (104)
37 3se6_A Endoplasmic reticulum a 20.4 3.6E+02 0.012 31.0 10.3 134 365-504 805-941 (967)
38 2mys_B Myosin; muscle protein, 20.1 3.8E+02 0.013 22.2 8.4 34 470-504 110-143 (166)
39 1elk_A Target of MYB1; superhe 20.0 1.6E+02 0.0056 25.9 5.9 93 75-174 35-132 (157)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=9.7e-43 Score=348.51 Aligned_cols=184 Identities=40% Similarity=0.715 Sum_probs=129.3
Q ss_pred CHHHHHHHHhh-hCCCCCCCCCCCcchhHHHHHHHHHHHHHhcccccHH-------HHhcCCChHH----HHHHHHHHHH
Q 009767 1 MYALLCSDLNE-KLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQ----EMERMDQERL 68 (526)
Q Consensus 1 mYA~LC~~L~~-~~~~~~~~~~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~-------~~~~~~~~e~----e~e~~~~~~~ 68 (526)
|||+||..|+. .+|.+ +.++...+||++||++||++|++.+.... +++....+++ +.|.++++.+
T Consensus 65 ~YA~Lc~~L~~~~~p~~---~~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~ 141 (260)
T 1hu3_A 65 AYANMCRCLVTLKVPMA---DKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDK 141 (260)
T ss_dssp HHHHHHHHHTTCCCC------------CHHHHHHHHHHHHHHHHTC------------------------------CCSS
T ss_pred HHHHHHHHHHHhhCCcc---cCCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHH
Confidence 79999999988 46543 23345688999999999999999875321 1111111111 0111222356
Q ss_pred HHhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHH
Q 009767 69 VKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE 148 (526)
Q Consensus 69 ~K~r~lGnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~ 148 (526)
.|+|++|||+||||||+++||+++|||.||..||++ |+|++|||+|.||+|||+.|++ +.++..|+.||.+|+.
T Consensus 142 ~k~r~lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~ 215 (260)
T 1hu3_A 142 ARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEK 215 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999986 7999999999999999999996 4456789999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHHHhCCCCccccccCCCcHHHHHHHH
Q 009767 149 LTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 193 (526)
Q Consensus 149 l~~~~~ls~Rirfmi~dvidlR~~~W~~r~~~~~pkti~~i~~e~ 193 (526)
++.+.++|+|+||||+||+|||+|||++++.+.+||||+|||+||
T Consensus 216 ~~~~~~ls~Rirfmi~~l~dLR~~~W~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 216 IVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHTTTCC-----------------
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHhhC
Confidence 999999999999999999999999999999999999999999986
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=7e-38 Score=317.09 Aligned_cols=174 Identities=26% Similarity=0.489 Sum_probs=136.1
Q ss_pred CHHHHHHHHhhhCCCCCCCCC-CCc--chhHHHHHHHHHHHHHhcccccH--HHHhcCCChHHH--HHHHHHHHHHHhhh
Q 009767 1 MYALLCSDLNEKLPPFPSDEP-GGK--DITFKRILLNHCQEAFEGADNTR--AEIRQMTAPEQE--MERMDQERLVKLRT 73 (526)
Q Consensus 1 mYA~LC~~L~~~~~~~~~~~~-~~~--~~~Fr~~LL~~cQ~eFe~~~~~~--~~~~~~~~~e~e--~e~~~~~~~~K~r~ 73 (526)
|||+||..|+..+|....+++ .++ ...||++||++||++|++.+... ..-+ .+..+.| .++++++.+.|+|+
T Consensus 95 ~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~-~~~~e~e~~~~e~~~~~~~k~r~ 173 (284)
T 2vso_E 95 MYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNED-GTPLEPEMMSEEYYAAASAKRRG 173 (284)
T ss_dssp HHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC-------------CCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccc-cchhhhhhhhhHHHHHHHHHHHH
Confidence 799999999998875444432 222 46799999999999999986321 0000 0000111 12234556889999
Q ss_pred hhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCc--------chhhHHHHHHH
Q 009767 74 LGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPK--------SRRVNDVYFSR 145 (526)
Q Consensus 74 lGnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~~~--------~~~~~d~~f~~ 145 (526)
+|||+||||||+++|++++|||.||..||++. ...|+|++|||+|+||+|||+.||+... ++..||.||++
T Consensus 174 lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~-~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~ 252 (284)
T 2vso_E 174 LGLVRFIGFLYRLNLLTGKMMFECFRRLMKDL-TDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGI 252 (284)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCcHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999741 1248999999999999999999997542 36789999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHHhC-CCCc
Q 009767 146 LKELTTNSQLVPRLRFMIHDVLDLRAN-NWVP 176 (526)
Q Consensus 146 l~~l~~~~~ls~Rirfmi~dvidlR~~-~W~~ 176 (526)
|+.++.+.++|+||||||+||+|||+| ||++
T Consensus 253 l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 253 LDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999999997 9985
No 3
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=2.6e-38 Score=309.43 Aligned_cols=150 Identities=21% Similarity=0.350 Sum_probs=128.5
Q ss_pred CHHHHHHHHhhhCCCCCCCCCCCcchhHHHHHHHHHHHHHhcccccHHHHhcCCChHHHHHHHHHHHHHHhhhhhhHHHH
Q 009767 1 MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLI 80 (526)
Q Consensus 1 mYA~LC~~L~~~~~~~~~~~~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~~~~~~~~~e~e~e~~~~~~~~K~r~lGnirFI 80 (526)
|||+||.+|....+. +. + ...||++|||+||++|++++ | .+.+.|+|++|||+||
T Consensus 56 ~YA~LC~~L~~~~~~----~~-g-~~~Fr~~LLn~cQ~eFe~~e--------------e-----~~~~~k~r~lG~i~FI 110 (224)
T 2i2o_A 56 EAGRICYTIVQAEAK----QT-N-GSVFRRNLLNRLQQEFKARE--------------E-----TRKRSTQEWVCLVSFI 110 (224)
T ss_dssp HTHHHHHHHHHHHHH----HH-S-CCHHHHHHHHHHHHHHHTHH--------------H-----HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc----cc-c-chHHHHHHHHHHHHHHHChH--------------H-----HHHHHHHHHhHHHHHH
Confidence 799999999887532 11 2 34599999999999999842 1 1246789999999999
Q ss_pred HHHhcC----CC--CC-HHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHH-HHhC
Q 009767 81 GELLKQ----KM--VP-EKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE-LTTN 152 (526)
Q Consensus 81 GELfk~----~~--l~-e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~-l~~~ 152 (526)
||||++ +| ++ ++|||.||..||.+. ..|+|++|||+|+||+|||+.||+..+ ..||+||.+|++ ++++
T Consensus 111 gELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~--~~p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~ 186 (224)
T 2i2o_A 111 CNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD--ALKNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQ 186 (224)
T ss_dssp HHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH--HHTSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHC
T ss_pred HHHHhHhcccCcchHHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcC
Confidence 999999 84 56 889999999999752 247999999999999999999997543 789999999999 7888
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCcccc
Q 009767 153 SQLVPRLRFMIHDVLDLRANNWVPRRE 179 (526)
Q Consensus 153 ~~ls~Rirfmi~dvidlR~~~W~~r~~ 179 (526)
+++|+||||||+||||||++||++++.
T Consensus 187 ~~ls~RiRfml~dlieLR~~~W~~~~~ 213 (224)
T 2i2o_A 187 EDLSSMGRLLLLEILEFRAGGWKLSDT 213 (224)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence 999999999999999999999999864
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=289.53 Aligned_cols=147 Identities=20% Similarity=0.393 Sum_probs=126.0
Q ss_pred CHHHHHHHHhhhCCCCCCCCCCCcchhHHHHHHHHHHHHHhcccccHHHHhcCCChHHHHHHHHHHHHHHhhhhhhHHHH
Q 009767 1 MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLI 80 (526)
Q Consensus 1 mYA~LC~~L~~~~~~~~~~~~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~~~~~~~~~e~e~e~~~~~~~~K~r~lGnirFI 80 (526)
|||+||.+|+..++.++ ...+||++||++||+||++.+++. + . | .++|+|++|||+||
T Consensus 78 ~YA~LC~~l~~~l~~~~------~~~~Fr~lLL~rcQ~eFe~~~~~~----~--~-d---------~~~k~r~lg~i~FI 135 (234)
T 3rk6_A 78 MGARLCNYLSHHLTISP------QSGNFRQLLLQRCRTEYEVKDQAA----K--G-D---------EVTRKRFHAFVLFL 135 (234)
T ss_dssp HHHHHHHHHHHHCCCCC------TTCCHHHHHHHHHHHHHTTHHHHT----S--S-C---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC------chhHHHHHHHHHHHHHHHhhHHhh----h--c-c---------HHHHHHHHHHHHHH
Confidence 79999999999876443 246899999999999999976421 1 1 1 13578999999999
Q ss_pred HHHhcC--------CCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcC--CcchhhHHHHHHHHHHHH
Q 009767 81 GELLKQ--------KMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDEN--PKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 81 GELfk~--------~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~--~~~~~~~d~~f~~l~~l~ 150 (526)
||||++ +|++++|||.||.+||... ...|+||+|||+|+||+|||+.||+. ++++..||.||++|+.++
T Consensus 136 gELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l-~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~ 214 (234)
T 3rk6_A 136 GELYLNLEIKGTNGQVTRADILQVGLRELLNAL-FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVV 214 (234)
T ss_dssp HHHHHHCCEECTTSSEECCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccchhHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHH
Confidence 999998 8999999999999998751 12489999999999999999999963 355678999999999999
Q ss_pred hCCCCChhHHHHHHHHHHHH
Q 009767 151 TNSQLVPRLRFMIHDVLDLR 170 (526)
Q Consensus 151 ~~~~ls~Rirfmi~dvidlR 170 (526)
.++++|+||||||+||||||
T Consensus 215 ~~~~ls~Rirfml~dlieLR 234 (234)
T 3rk6_A 215 LDANCSRDVKQMLLKLVELR 234 (234)
T ss_dssp HHCCCCHHHHHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999998
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=3.3e-33 Score=260.96 Aligned_cols=157 Identities=21% Similarity=0.224 Sum_probs=138.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHH
Q 009767 353 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 432 (526)
Q Consensus 353 ~~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~ 432 (526)
+|.+|+|+++++++++|+|||+++|++||+.||+||++|.|||+||+.+|+++||+++.+||++++||++|+. ++||++
T Consensus 1 ~p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~ 79 (165)
T 2rg8_A 1 GLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTT 79 (165)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999976 999999
Q ss_pred HHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCCchhhH
Q 009767 433 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVL 511 (526)
Q Consensus 433 q~~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~~~ 511 (526)
||.+||..+++.++|++||+|+||++||+|+||+|.++++++.||.+++.+..+.. .++++..+-..|+...++.+|.
T Consensus 80 ~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~-~~~~l~~a~~ll~~~~~~~~~~ 157 (165)
T 2rg8_A 80 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQ-ARAALDKATVLLSMSKGGKRKD 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHH-HHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchH-HHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999999988855444 4555555557776664555544
No 6
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=1.5e-32 Score=253.24 Aligned_cols=137 Identities=23% Similarity=0.332 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CcChHHHHHHHHHHHhCCCCCHHHHH
Q 009767 357 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 435 (526)
Q Consensus 357 s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~-~~~re~v~~LL~~L~~~~~ls~~q~~ 435 (526)
++|+++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||.+|+++++||++||.
T Consensus 4 ~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 4 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 56899999999999999999999999999999999999999999999999996 78899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHH
Q 009767 436 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 496 (526)
Q Consensus 436 ~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~ 496 (526)
+||.+|++.|+||+||+|+||++||+|++++|.+|+++++|+..+ ..++ .+|++|+++
T Consensus 84 ~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~--p~~~-~~rk~f~s~ 141 (152)
T 2ion_A 84 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC--PSRS-RGRKRFVSE 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC--TTC-----------
T ss_pred HHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC--CCcc-cchhhhccc
Confidence 999999999999999999999999999999999999999999974 4444 889999876
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.97 E-value=1.2e-31 Score=240.89 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CcChHHHHHHHHHHHhCCCCCHHHHH
Q 009767 357 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 435 (526)
Q Consensus 357 s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~-~~~re~v~~LL~~L~~~~~ls~~q~~ 435 (526)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||++||.
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 45799999999999999999999999999999999999999999999999998 48899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHH
Q 009767 436 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEV 480 (526)
Q Consensus 436 ~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~ 480 (526)
+||.++++.|+|+++|+|+||++||+|++++|.+|+++++|+..+
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~ 126 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999998753
No 8
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.96 E-value=1.2e-29 Score=262.92 Aligned_cols=159 Identities=25% Similarity=0.317 Sum_probs=150.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHH
Q 009767 354 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRD 433 (526)
Q Consensus 354 ~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q 433 (526)
+.+|+|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||+++.+|+++++||++|+++++||.+|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCCh-HHHHHHHHhhhchhHHHHHHHHHHHHHhcCCCchhhHH
Q 009767 434 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLA 512 (526)
Q Consensus 434 ~~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~-~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~~~~ 512 (526)
|.+||.++++.++|+.+|+|+||.+||.|+++++.+|++++ .++..+++.+.++|....|+.++++.+....+-+++.+
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999 66777888889999999999999999988855555543
No 9
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.95 E-value=1.6e-28 Score=250.42 Aligned_cols=137 Identities=23% Similarity=0.335 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CcChHHHHHHHHHHHhCCCCCHHH
Q 009767 355 KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRD 433 (526)
Q Consensus 355 ~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~-~~~re~v~~LL~~L~~~~~ls~~q 433 (526)
.+++++++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||.+|
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3689999999999999999999999999999999999999999999999999997 788999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHH
Q 009767 434 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 496 (526)
Q Consensus 434 ~~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~ 496 (526)
|.+||.+|++.|+|++||+|+||++||+|+++||.+|+++++++..+ +...+++|+++
T Consensus 239 ~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~-----~~~~rkrf~se 296 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 296 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS-----CCC--------
T ss_pred HHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----Ccccccccccc
Confidence 99999999999999999999999999999999999999999988765 57778888765
No 10
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.95 E-value=3.5e-28 Score=252.20 Aligned_cols=149 Identities=22% Similarity=0.256 Sum_probs=132.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHH
Q 009767 353 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 432 (526)
Q Consensus 353 ~~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~ 432 (526)
.|.++++|++|++++||+|||+++|++||+.||+||++|.||+.||+.+|++|||+++.+||++++||++|+. ++||++
T Consensus 45 ~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~ 123 (358)
T 3eiq_C 45 VLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTN 123 (358)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHHHHHHHhc
Q 009767 433 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQS 503 (526)
Q Consensus 433 q~~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~ 503 (526)
||.+||..+++.++|+++|+|+||+|||.|+||+|.|+++++.||.++...+ ++.....++..+-..|+.
T Consensus 124 ~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-~~~~~~~~l~~a~~~L~~ 193 (358)
T 3eiq_C 124 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQARAALDKATVLLSM 193 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC----CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-cchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998764443 444566777777766654
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.95 E-value=1.2e-27 Score=248.09 Aligned_cols=136 Identities=24% Similarity=0.333 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CcChHHHHHHHHHHHhCCCCCHHHH
Q 009767 356 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDI 434 (526)
Q Consensus 356 ~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~-~~~re~v~~LL~~L~~~~~ls~~q~ 434 (526)
.+.++++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||.+||
T Consensus 211 ~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 211 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 378999999999999999999999999999999999999999999999999997 6899999999999999999999999
Q ss_pred HHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHH
Q 009767 435 GTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 496 (526)
Q Consensus 435 ~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~ 496 (526)
.+||.+|++.|+|++||||+||++||+|+++||.+|++++.|+... +...|++|+++
T Consensus 291 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~-----p~r~rkr~~se 347 (358)
T 3eiq_C 291 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 347 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTC-----CCC--------
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----cccCCcccccc
Confidence 9999999999999999999999999999999999999999987754 66778998765
No 12
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.7e-27 Score=245.92 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHH
Q 009767 356 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPT-YHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDI 434 (526)
Q Consensus 356 ~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~-~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~ 434 (526)
-+.||+.|++++||+|||+++|++||++||+||++|. |||+||+.+|+++||+++.+||++++||++|+.+++||++||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4789999999999999999999999999999999994 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCCchhhHHh
Q 009767 435 GTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAV 513 (526)
Q Consensus 435 ~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~~~~~ 513 (526)
.+||.++++.++|+++|+|+||.|||+|+||+|.+|++++++|...+.. |....++..++..+...++.+|+...
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~----G~~~~l~l~vl~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES----GTHFPLFLLCLQQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG----GTTTTHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc----cchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999887653 33446778899999888555666443
No 13
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.94 E-value=8.1e-28 Score=245.26 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009767 360 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 439 (526)
Q Consensus 360 el~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~ 439 (526)
|++|+++++|+|||+++|++||+.||+||++|.|||.||+.+|++|||+++.+||++++||++|+. +++|++||.+||.
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 79 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFD 79 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred HHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHhhhchhHHHHHHHHHHHHHhcCC
Q 009767 440 LYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSP 505 (526)
Q Consensus 440 ~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 505 (526)
.+++.++|+++|+|+||++||.|+||+|.||++|+.||..+..+.. ....++++..+-..|+...
T Consensus 80 ~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~-~~~g~~~l~~a~~~l~~~~ 144 (307)
T 2zu6_B 80 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVD-CVQARAALDKATVLLSMSK 144 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCC-CHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhccc-chHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999998887654 4445677777777786554
No 14
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.52 E-value=3.5e-14 Score=139.68 Aligned_cols=128 Identities=17% Similarity=0.352 Sum_probs=105.2
Q ss_pred HHHhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CCCCCChhh-------HHHHHHHHHHHhhhhhcCCcchhh
Q 009767 68 LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLEND--GKTCPAEEN-------VEAICQFFNTIGKQLDENPKSRRV 138 (526)
Q Consensus 68 ~~K~r~lGnirFIGELfk~~~l~e~ii~~ci~~Ll~~~--~~~~p~ee~-------iE~lc~LL~tiG~~Ld~~~~~~~~ 138 (526)
+..+|.+++|+||||||+.+||+.++|+.|+-.|+.-. ....+++.+ |+++|.||.|||..++. ...+..
T Consensus 96 ~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~-~~~~kk 174 (248)
T 1uw4_B 96 KFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDR-GSSKRK 174 (248)
T ss_dssp GGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcc-hhhHHH
Confidence 46678999999999999999999999999999999731 112246667 99999999999999996 445677
Q ss_pred HHHHHHHHHHHH----------hCCCCChhHHHHHHHHHHH-HhCCCCccccccCCCcHHHHHHHHHHh
Q 009767 139 NDVYFSRLKELT----------TNSQLVPRLRFMIHDVLDL-RANNWVPRREEMKAKTITEIHSEAEKN 196 (526)
Q Consensus 139 ~d~~f~~l~~l~----------~~~~ls~Rirfmi~dvidl-R~~~W~~r~~~~~pkti~~i~~e~~~~ 196 (526)
||.|+..++.+. ++..+|.+|+||++|+++. |.+.|..+.-++.+..+++|+++....
T Consensus 175 Ld~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~~~~~~~~eEa~~~v~~le~~~~~~ 243 (248)
T 1uw4_B 175 LDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIK 243 (248)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 999888888764 3457999999999999998 888888887777788888887765443
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=97.69 E-value=0.00015 Score=82.20 Aligned_cols=106 Identities=13% Similarity=0.213 Sum_probs=85.9
Q ss_pred HHhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-CCCCC---hhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHH
Q 009767 69 VKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDG-KTCPA---EENVEAICQFFNTIGKQLDENPKSRRVNDVYFS 144 (526)
Q Consensus 69 ~K~r~lGnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~-~~~p~---ee~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~ 144 (526)
.+++....+||||+|+..+|+++..+..++..|+.... ...|. ++-+.|++..|..||+.|.+. .+..++.+|+
T Consensus 101 ~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~--~~~~l~~lle 178 (771)
T 1h2v_C 101 NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK--KDAEMDRIFA 178 (771)
T ss_dssp CHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 34577789999999999999999999999999998531 11232 678999999999999999863 3356899999
Q ss_pred HHHHHHhCC-C----------------CChhHHHHHHHHHHHHhCCCCc
Q 009767 145 RLKELTTNS-Q----------------LVPRLRFMIHDVLDLRANNWVP 176 (526)
Q Consensus 145 ~l~~l~~~~-~----------------ls~Rirfmi~dvidlR~~~W~~ 176 (526)
+++.++.+. + -..|+.+|+..|..+|++||..
T Consensus 179 ~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 179 NTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp HHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCC
Confidence 999876432 2 1479999999999999999974
No 16
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=63.03 E-value=25 Score=37.20 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhcCCC--------cChHHHHHHHHHHHhCCCCCHH
Q 009767 365 TVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIP--------PCVEPVIQLLEFLLNKNVLTTR 432 (526)
Q Consensus 365 ~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~-~~~V~~~I~~aLE~~~--------~~re~v~~LL~~L~~~~~ls~~ 432 (526)
+..+|+-|-..||+++|...+.++...... ..+++..+..++-+.. ...+.+.+||..+...|+.+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 466788899999999999999998643333 2455666665654321 1235667888888887765443
No 17
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.04 E-value=54 Score=29.69 Aligned_cols=92 Identities=8% Similarity=0.132 Sum_probs=57.8
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhH----HHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHH
Q 009767 75 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENV----EAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 75 GnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~i----E~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l~ 150 (526)
+.+.-|+++.+.+-...+....+|+.-|... +.... .-|=.+++.||+.+-..-..+.+|+ .|..++
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~-----n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~----eL~kl~ 102 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSP-----QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN----ELIKVV 102 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH----HHHHHh
Confidence 4566788888877666666666666666542 33333 3334445567888774333344444 455555
Q ss_pred hC----CCCChhHHHHHHHHHHHHhCCCC
Q 009767 151 TN----SQLVPRLRFMIHDVLDLRANNWV 175 (526)
Q Consensus 151 ~~----~~ls~Rirfmi~dvidlR~~~W~ 175 (526)
.. +..+..||-.|..+|+.+...+.
T Consensus 103 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 103 SPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp CCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 42 35789999999999998765553
No 18
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=44.38 E-value=68 Score=27.32 Aligned_cols=124 Identities=7% Similarity=-0.060 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CcChHHHHHHHHHHHhCCCCCHH
Q 009767 354 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTR 432 (526)
Q Consensus 354 ~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~-~~~re~v~~LL~~L~~~~~ls~~ 432 (526)
...+++.|++++..+-. +-..+..+..-+-+- ..+..++|..+.. .|.+. ...|=.+.-|+..++...-=...
T Consensus 2 ssf~~~~l~~~L~~L~~---s~~sI~~~s~w~l~~--~~~a~~iv~~i~~-~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 2 SSFSESALEKKLSELSN---SQQSVQTLSLWLIHH--RKHAGPIVSVWHR-ELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp -CCCHHHHHHHHHHCCS---STTHHHHHHHHHHHT--GGGHHHHHHHHHH-HHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCHHHHHHHHHHccc---cHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 45788888888777510 111222222222221 1234455554444 45544 44444555566555421101124
Q ss_pred HHHHHHHHHhhcc-hhhh-cCCCchhHHHHHHHHHHHHcCCCChHHHHHHHHh
Q 009767 433 DIGTGCLLYGSLL-DDIG-IDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKK 483 (526)
Q Consensus 433 q~~~Gf~~vl~~l-~Dl~-iDiP~a~~~la~~iar~i~~~~l~~~~i~~~~~~ 483 (526)
+|...|..++..+ .++. ..-+....-+.+++.-.-..++++..+|..+-..
T Consensus 76 ~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~ 128 (135)
T 4fu3_A 76 EFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLS 128 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 5777777543221 1110 0114445556666666666666676666655433
No 19
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=38.56 E-value=2.5e+02 Score=26.15 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcC---CCcChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009767 363 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEK---IPPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 439 (526)
Q Consensus 363 kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~---~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~ 439 (526)
...-.+|.+++..+|.+++...++++..-.....-+..-|...|-+ .+-+|+-+..|+..+ +++..+.+
T Consensus 40 ~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~l--------DdI~D~ie 111 (227)
T 3l39_A 40 SASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCM--------DDVIDGIN 111 (227)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH--------HHHHHHHH
Confidence 3456678999987777777666666543222333444445555665 488999988888876 44666666
Q ss_pred HHhhcchhhhcC
Q 009767 440 LYGSLLDDIGID 451 (526)
Q Consensus 440 ~vl~~l~Dl~iD 451 (526)
.+...+.=..++
T Consensus 112 ~~a~~l~l~~~~ 123 (227)
T 3l39_A 112 SSAKRIVIYNPR 123 (227)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHhhccCCC
Confidence 555555433444
No 20
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=38.53 E-value=1.7e+02 Score=31.73 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHhCCCC-Ch-HHHHHHHHHHHhcC-----CCcChH--HHHHHHHHHHhCCC
Q 009767 359 ADLRKKTVSLLEEYFSIR-ILDEALQCVEELRAPT-YH-PEVVKEAIALALEK-----IPPCVE--PVIQLLEFLLNKNV 428 (526)
Q Consensus 359 eel~kk~~~il~EY~~~~-D~~Ea~~~i~eL~~p~-~~-~~~V~~~I~~aLE~-----~~~~re--~v~~LL~~L~~~~~ 428 (526)
.++++++++..+.+|+.. .+++++.-++.++... -+ .++...+|..-+|- +=..+| .++.|+-.|+..++
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999876 5999999999987543 23 46666666666662 223344 48999999999999
Q ss_pred CCHHHHHHHHHHHhhcchh
Q 009767 429 LTTRDIGTGCLLYGSLLDD 447 (526)
Q Consensus 429 ls~~q~~~Gf~~vl~~l~D 447 (526)
++.-.+.-|+.-|++.+-+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999988
No 21
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=36.86 E-value=97 Score=27.36 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=63.4
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHH----HHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHH
Q 009767 75 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEA----ICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 75 GnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~----lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l~ 150 (526)
+.|--|+++.+.+-...+....+|+.-|.+. +....-. |=.+++.||..+...-..+.+++ .|..++
T Consensus 30 ~~ileicD~I~~~~~~pk~a~ral~krl~~~-----n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~----eL~kl~ 100 (149)
T 3g2s_A 30 ASINGFCEQLNEDFEGPPLATRLLAHKIQSP-----QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN----ELIKVV 100 (149)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHCCCCcHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH----HHHHHH
Confidence 5667788888887766666666666666542 3333333 33445566888764333344444 466555
Q ss_pred hCC----CCChhHHHHHHHHHHHHhCCCCccccccCCCcHHHHHHHH
Q 009767 151 TNS----QLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 193 (526)
Q Consensus 151 ~~~----~ls~Rirfmi~dvidlR~~~W~~r~~~~~pkti~~i~~e~ 193 (526)
..+ ..+..|+-.|..+|......+.. .|+ +.++.++-
T Consensus 101 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~~-----~p~-i~~~Y~~L 141 (149)
T 3g2s_A 101 SPKYLGSRTSEKVKNKILELLYSWTVGLPE-----EVK-IAEAYQML 141 (149)
T ss_dssp CTTTTGGGSCHHHHHHHHHHHHHHHHHCTT-----CHH-HHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhCC-----Cch-HHHHHHHH
Confidence 432 46899999999999987765532 233 55555443
No 22
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=36.13 E-value=1.4e+02 Score=30.39 Aligned_cols=135 Identities=11% Similarity=0.007 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 009767 364 KTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGS 443 (526)
Q Consensus 364 k~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl~ 443 (526)
..+.+++.|..+.+.+|-..++..|.+ ...+.++...+..+++.+..-..-+..++..+.. +-...+ .+++=+.+
T Consensus 253 ~~~~l~~~y~~s~~~~ek~~ll~aL~~-s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~-n~~g~~---~aw~fl~~ 327 (419)
T 3rjo_A 253 GWDFLYSKYQFSLSSTEKSQIEFALCR-TQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGR-NPVGYP---LAWQFLRK 327 (419)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHT-STTTHH---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc-CcchHH---HHHHHHHH
Confidence 467888999999999999999999976 4468899999999997653122333445555543 433332 22333334
Q ss_pred cchhhhcCCCchhHHHHHHHHHHHHcCCCChHH---HHHHHHhhhchhHHHHHHHHHHHHHhcC
Q 009767 444 LLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIV---LKEVLKKVEDNMFRRSIFTAAMKSIQSS 504 (526)
Q Consensus 444 ~l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~---i~~~~~~~~~~~~~~~~l~~~l~~l~~~ 504 (526)
..+.|.--.+.....++.+|..+ .....+... |+..++.....+...+.+..+++.++.+
T Consensus 328 nw~~l~~~~~~~~~~~~~~i~~~-~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~qale~i~~n 390 (419)
T 3rjo_A 328 NWNKLVQKFELGSSSIAHMVMGT-TNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEEN 390 (419)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHT-TTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchhHHHHHHHH-hhcCCCHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 44444433332333445554332 333344433 4444444333332345567777777655
No 23
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=35.06 E-value=59 Score=34.31 Aligned_cols=83 Identities=6% Similarity=-0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 009767 364 KTVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYG 442 (526)
Q Consensus 364 k~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~-~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl 442 (526)
....+|.-|...|++++|...++++..-... ..+++..+..++-+. .+.+.+.+++..+...|+.+.......+-..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999998654443 345566666666543 34578889999999988877666655555544
Q ss_pred hcchh
Q 009767 443 SLLDD 447 (526)
Q Consensus 443 ~~l~D 447 (526)
....+
T Consensus 186 ~~~g~ 190 (501)
T 4g26_A 186 MDTKN 190 (501)
T ss_dssp HHTTC
T ss_pred hhCCC
Confidence 44443
No 24
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=34.11 E-value=1.7e+02 Score=26.06 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=54.9
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhh----HHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHH
Q 009767 75 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEEN----VEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 75 GnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~----iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l~ 150 (526)
+.+.-|+++.+.+-...+....+|++-|... +... |.-|=.+++.||+.+-..-..+.+||. |..++
T Consensus 34 ~~~leicD~I~~~~~~~keA~ral~krl~~~-----n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~e----l~~l~ 104 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGAKDCLKAIMKRVNHK-----VPHVALQALTLLGACVANCGKIFHLEVCSRDFATE----VRAVI 104 (163)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH----HHHHH
Confidence 3455677777776666666666666666542 2332 233334455668877743333455555 44454
Q ss_pred hCCCCChhHHHHHHHHHHHHhCCCC
Q 009767 151 TNSQLVPRLRFMIHDVLDLRANNWV 175 (526)
Q Consensus 151 ~~~~ls~Rirfmi~dvidlR~~~W~ 175 (526)
. ++....|+-.|..+|+.+...+.
T Consensus 105 ~-~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 105 K-NKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp H-TTCCHHHHHHHHHHHHHHHHHTT
T ss_pred c-cCCCHHHHHHHHHHHHHHHHHhc
Confidence 4 45678999999999987665443
No 25
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=33.36 E-value=3.4e+02 Score=26.31 Aligned_cols=99 Identities=15% Similarity=0.010 Sum_probs=61.3
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhhcch
Q 009767 369 LEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNK--NVLTTRDIGTGCLLYGSLLD 446 (526)
Q Consensus 369 l~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~--~~ls~~q~~~Gf~~vl~~l~ 446 (526)
|.||+-+-++.+|+..++.-+ +.+..++...=|+.+..+..+...|..+.+. +.++...+.+.|..+++.+-
T Consensus 12 lre~L~sWkiK~a~ela~~~e------~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk 85 (265)
T 3b2a_A 12 LRELVLSWQILDAVSLALEDK------RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHCH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhHHHHHHHHHhch------hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 468888889999887776632 3444444444455556666777777788876 78888899999998886553
Q ss_pred hhhcCCCchhHHHHHHHHHHHHcCCCChHH
Q 009767 447 DIGIDLPKAPNNFGEMVGKLVVAKSLDFIV 476 (526)
Q Consensus 447 Dl~iDiP~a~~~la~~iar~i~~~~l~~~~ 476 (526)
+- =-++.-+-.+.+...+.+.-++.+.
T Consensus 86 ~~---dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 86 QE---NEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp ST---THHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred cc---chhHHHHHHHHHHHHHcCCCCCHHH
Confidence 21 1222333334444444444444443
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=32.38 E-value=64 Score=37.74 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChH-HHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCC----------CCHHHH
Q 009767 366 VSLLEEYFSIRILDEALQCVEELRAPTYHP-EVVKEAIALALEKIPPCVEPVIQLLEFLLNKNV----------LTTRDI 434 (526)
Q Consensus 366 ~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~-~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~----------ls~~q~ 434 (526)
..+|+=|...|.++||...++++......| .+.+.++..+|-+.....+.+.+||..+...|+ ++.++-
T Consensus 169 NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 456666777777777777777776555543 566777777776654444667788888888765 333443
Q ss_pred HHHHHHHhhcchhhhcC
Q 009767 435 GTGCLLYGSLLDDIGID 451 (526)
Q Consensus 435 ~~Gf~~vl~~l~Dl~iD 451 (526)
..-+..|-..-+++..+
T Consensus 249 ~~vL~~Vrkv~P~f~p~ 265 (1134)
T 3spa_A 249 ATVLKAVHKVKPTFSLP 265 (1134)
T ss_dssp HHHHHHHGGGCCCCCCC
T ss_pred HHHHHHHHHhCcccCCC
Confidence 33444454445555554
No 27
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=25.89 E-value=3.2e+02 Score=23.50 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=53.3
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHH----HHHhhhhhcCCcchhhHHHHHHHHHHHH
Q 009767 75 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFF----NTIGKQLDENPKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 75 GnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL----~tiG~~Ld~~~~~~~~~d~~f~~l~~l~ 150 (526)
+.+--|+++.+.+-...+....+|+.-|... +....-....|| +.||..+...-..+.++|.+. .++
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~-----n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~----~l~ 94 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHK-----DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS----NVL 94 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH----HHh
Confidence 4566688888887776666666676666542 222222233344 455887774333455666643 343
Q ss_pred hCCCCChhHHHHHHHHHHHHhC
Q 009767 151 TNSQLVPRLRFMIHDVLDLRAN 172 (526)
Q Consensus 151 ~~~~ls~Rirfmi~dvidlR~~ 172 (526)
. ..+..|+-.|..+|.-...
T Consensus 95 ~--~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 95 N--KGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp H--HSCHHHHHHHHHHHHHHHH
T ss_pred c--cCCHHHHHHHHHHHHHHHH
Confidence 3 2468999999999986554
No 28
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=25.52 E-value=2.8e+02 Score=22.74 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=42.6
Q ss_pred CCCCHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHh
Q 009767 354 TKLNLA--DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLN 425 (526)
Q Consensus 354 ~~~s~e--el~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~ 425 (526)
..+|.+ ++.+.+.+++.|| ||+.+...+..-.-.+ -|+.++... .+.++++++.+|..|..
T Consensus 11 e~Ls~e~~d~~Rai~sl~~El-------eAI~~Y~q~a~~~~d~-~~k~vl~~i---~~EEkeH~g~~lelLrr 73 (95)
T 3k6c_A 11 QELSDETRDMHRAIISLREEL-------EAVDLYNQRVNACKDK-ELKAILAHN---RDEEKEHAAMLLEWIRR 73 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCCCH-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCH-HHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 357777 7889999999996 7888887764323333 344444332 24678999999998877
No 29
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.74 E-value=3.7e+02 Score=30.55 Aligned_cols=134 Identities=10% Similarity=-0.006 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 009767 365 TVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSL 444 (526)
Q Consensus 365 ~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 444 (526)
.+.+++.|....+..|-...+..|.+. ..+.++...+..+|+.+.....-+..+|..+.. + +.-...+++=+.+.
T Consensus 745 ~~~l~~~~~~~~~~~ek~~ll~aL~~~-~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~-n---~~g~~~~~~f~~~n 819 (909)
T 4fke_A 745 WDFAWGQLQQAQLVNEADKLRSALACS-NEVWLLNRYLGYTLNPDLIRKQDATSTINSIAS-N---VIGQPLAWDFVQSN 819 (909)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHTTC-CCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHH-S---TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc-C---hHHHHHHHHHHHHH
Confidence 356778888999999999999999773 467899999999987543222334455555554 2 22344556666777
Q ss_pred chhhhcCCCchhHHHHHHHHHHHHcCCCChHHHH---HHHHhhhchh--HHHHHHHHHHHHHhcC
Q 009767 445 LDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLK---EVLKKVEDNM--FRRSIFTAAMKSIQSS 504 (526)
Q Consensus 445 l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~i~---~~~~~~~~~~--~~~~~l~~~l~~l~~~ 504 (526)
.+.|.-..+.....++.+|. .+....-+...+. ..++...+.+ ...+.+..+++.++.+
T Consensus 820 ~~~l~~~~~~~~~~~~~~i~-~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~~~le~i~~n 883 (909)
T 4fke_A 820 WKKLFQDYGGGSFSFSNLIQ-GVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKAN 883 (909)
T ss_dssp CTTTTTSSSSCCCCHHHHHH-HHHTTCCSHHHHHHHHHHHTTCSSSCCGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCccccchHHHHHHHHHHHHHHH
Confidence 77777666655445666554 3444444544443 3333322222 2345677777777665
No 30
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=24.49 E-value=2e+02 Score=25.18 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCC---CCChHHHHHHHHH
Q 009767 357 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRA---PTYHPEVVKEAIA 403 (526)
Q Consensus 357 s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~---p~~~~~~V~~~I~ 403 (526)
....+++++..+++-.|..+-++|....|++|.. |.|..++|...+.
T Consensus 2 ~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~ 51 (153)
T 3us6_A 2 EVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFD 51 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 3456788888889999999988899999999953 4444455444443
No 31
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=24.45 E-value=5.1e+02 Score=28.93 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=38.9
Q ss_pred HhcCCC-cChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCCCch
Q 009767 405 ALEKIP-PCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 455 (526)
Q Consensus 405 aLE~~~-~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl~~l~Dl~iDiP~a 455 (526)
+|.+.+ .....+..+|.+|+..++++..-+.+=|..+++.+.|. |+|.+
T Consensus 96 ~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~--~~~q~ 145 (771)
T 1h2v_C 96 SLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE--DVPQV 145 (771)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCS--SCCHH
T ss_pred HHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhc--CCccc
Confidence 444443 24457789999999999999999999999999988654 67754
No 32
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.21 E-value=1.3e+02 Score=26.52 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=60.4
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHH----HHHHHhhhhhcCCcchhhHHHHHHHHHHHH
Q 009767 75 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQ----FFNTIGKQLDENPKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 75 GnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~----LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l~ 150 (526)
+.+--|+++.+.+-...+.....|+.-|.. .+....-.... +++.||..+-..-..+. +.+.|..++
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~-----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~----Fl~eL~kl~ 90 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQS-----PQEKEALYALTVLEMCMNHCGEKFHSEVAKFR----FLNELIKVL 90 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH----HHHHHHHTT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH----HHHHHHHHH
Confidence 455577777777654455555555555543 23443333344 44566887764323334 445566665
Q ss_pred hC----CCCChhHHHHHHHHHHHHhCCCCccccccCCCcHHHHHHHH
Q 009767 151 TN----SQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 193 (526)
Q Consensus 151 ~~----~~ls~Rirfmi~dvidlR~~~W~~r~~~~~pkti~~i~~e~ 193 (526)
.. ...+..|+-.|..+|..+...+.. .|+ |.+.+++-
T Consensus 91 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~~-----~p~-i~~~y~~L 131 (148)
T 1mhq_A 91 SPKYLGSWATGKVKGRVIEILFSWTVWFPE-----DIK-IRDAYQML 131 (148)
T ss_dssp CCSTTSCCCCHHHHHHHHHHHHHHHHHCTT-----CHH-HHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHcCC-----Cch-HHHHHHHH
Confidence 43 346889999999999987655432 243 55555543
No 33
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=22.90 E-value=4.3e+02 Score=24.34 Aligned_cols=52 Identities=12% Similarity=0.007 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHh------CCCCCHHHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCC
Q 009767 414 EPVIQLLEFLLN------KNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSL 472 (526)
Q Consensus 414 e~v~~LL~~L~~------~~~ls~~q~~~Gf~~vl~~l~Dl~iDiP~a~~~la~~iar~i~~~~l 472 (526)
+.+.-+|..+.. +.-++.+|+...-..+-+ ..|..|+|+..+|..++..|.+
T Consensus 141 Dkl~~~lqa~~~~g~~w~~~gv~~~q~~~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~ 198 (200)
T 3kh1_A 141 DRLQPLLHNFETEGGTWKPHGVTRAKVDKLLPRIEA-------GSKRLGAYARALVDEAVRRGYL 198 (200)
T ss_dssp HHHHHHHHHHHTTSTTTTTTTCBHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCCCccccCccHHHHHHHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCC
Confidence 455556665555 356789998886433332 6799999999999999999876
No 34
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=22.50 E-value=3e+02 Score=24.83 Aligned_cols=62 Identities=8% Similarity=0.088 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHhCCCCChHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHh
Q 009767 357 NLADLRKKTVSLLEEYFSIRILDEALQCV-EELRAPTYHPEVVKEAIALALEKIPPC-VEPVIQLLEFLLN 425 (526)
Q Consensus 357 s~eel~kk~~~il~EY~~~~D~~Ea~~~i-~eL~~p~~~~~~V~~~I~~aLE~~~~~-re~v~~LL~~L~~ 425 (526)
|.+|+..|+..||.-=|+..+.+--++-+ .|. .+.+.|...+|. ||...... .. .+|.+|..
T Consensus 42 st~e~~~kv~eii~~~~e~s~~~~Lv~~l~~e~---Gi~~~fs~~Ii~-ALs~tsM~~p~---~VL~~l~~ 105 (168)
T 3cz6_A 42 STRQFMDKLHEVISGDYEPSQAEKLVQDLCDET---GIRKNFSTSILT-CLSGDLMVFPR---YFLNMFKD 105 (168)
T ss_dssp SHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHH---CBCHHHHHHHHH-HTTTCGGGHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccChhhHHHHHHHHHHHh---CcccccHHHHHH-HhcCCcccCHH---HHHHHHHh
Confidence 67899999999998444455555444444 333 456778888777 78776544 22 55555543
No 35
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=21.13 E-value=52 Score=27.36 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhc---CCCcChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009767 363 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALE---KIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 439 (526)
Q Consensus 363 kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE---~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~ 439 (526)
.++-.+|+- ..+++|| ++|-.|....++.+.=++..++ ....+.|-+-.-|..| ++.--+|+..-|.
T Consensus 11 ekmGEl~k~---~m~VeeA----k~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~L---K~YavSQL~~Hy~ 80 (116)
T 1yoz_A 11 DRMGEIIRG---EKSVEEA----DKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLL---KTYVVSQLSIHFE 80 (116)
T ss_dssp HHHHHHHTT---SSCGGGH----HHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH---HHHHHHTHHHHHH
T ss_pred HHHHHHHHH---hhhHHHH----HHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344444442 2457777 7776665555555444333333 4566666666555544 3355678889999
Q ss_pred HHhhcchhhhcCC-----CchhHHHHHHHHH
Q 009767 440 LYGSLLDDIGIDL-----PKAPNNFGEMVGK 465 (526)
Q Consensus 440 ~vl~~l~Dl~iDi-----P~a~~~la~~iar 465 (526)
++++.|+|..--| |.+-+-+|-+|.|
T Consensus 81 ri~~~l~d~e~Ki~kkl~~ev~~~i~~~~~~ 111 (116)
T 1yoz_A 81 RLKEFAESKGFKIEKKLDPEVINEIALYIDR 111 (116)
T ss_dssp HHHHHHHTTC---CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhHHHHHHHH
Confidence 9999999998777 4444444544444
No 36
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=20.69 E-value=1.2e+02 Score=24.92 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHhhhch--hHHHHHHHHHHHHHhcCCCchh
Q 009767 456 PNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDN--MFRRSIFTAAMKSIQSSPAGQE 509 (526)
Q Consensus 456 ~~~la~~iar~i~~~~l~~~~i~~~~~~~~~~--~~~~~~l~~~l~~l~~~~~g~~ 509 (526)
.+|+|+||.-+|..|.-+.+.+.++-.-..+. .-...|+..++..|.....|+.
T Consensus 28 v~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F~~l~~L~~g~~ 83 (104)
T 2v75_A 28 IKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAFFALEALQQGES 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHCCch
Confidence 57999999999999999988877665443322 2234777777777777655543
No 37
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=20.42 E-value=3.6e+02 Score=30.99 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhc
Q 009767 365 TVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSL 444 (526)
Q Consensus 365 ~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 444 (526)
.+.+++.|..+.+..|-..++..|.+ ...+.++...+..+++.+.....-+..++..+.. +- .-..-+++=+.+.
T Consensus 805 ~~~l~~~y~~s~~~~ek~~ll~aL~c-t~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~-n~---~g~~~~w~f~~~n 879 (967)
T 3se6_A 805 WNYLLEQYELSMSSAEQNKILYALST-SKHQEKLLKLIELGMEGKVIKTQNLAALLHAIAR-RP---KGQQLAWDFVREN 879 (967)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHH-ST---THHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHhCcCcCcHhHHHHHHHHHHc-Ch---hHHHHHHHHHHHH
Confidence 46677788888888888888888876 3356778888888886542222333444444433 22 2223333334445
Q ss_pred chhhhcCCCchhHHHHHHHHHHHHcCCCChHH---HHHHHHhhhchhHHHHHHHHHHHHHhcC
Q 009767 445 LDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIV---LKEVLKKVEDNMFRRSIFTAAMKSIQSS 504 (526)
Q Consensus 445 l~Dl~iDiP~a~~~la~~iar~i~~~~l~~~~---i~~~~~~~~~~~~~~~~l~~~l~~l~~~ 504 (526)
.+.|.--.+.-...++.+|.. +.....+... |+..++...+.+...+.+..+++.++.+
T Consensus 880 w~~i~~~~~~~~~~~~~~i~~-~~~~~~t~~~l~~~~~f~~~~~~~~~~~~~~~q~le~i~~n 941 (967)
T 3se6_A 880 WTHLLKKFDLGSYDIRMIISG-TTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKN 941 (967)
T ss_dssp HHHHHHHSCTTSHHHHHHHHT-TTTTCCSHHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHH
Confidence 555443333222234444322 2223333333 3344443333333345566777777655
No 38
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.05 E-value=3.8e+02 Score=22.22 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=16.1
Q ss_pred CCCChHHHHHHHHhhhchhHHHHHHHHHHHHHhcC
Q 009767 470 KSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSS 504 (526)
Q Consensus 470 ~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~ 504 (526)
|.|+...+..++..+.. .....-+.++++.+-.+
T Consensus 110 G~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~D~d 143 (166)
T 2mys_B 110 GSIKKSFLEELLTTGGG-RFTPEEIKNMWAAFPPD 143 (166)
T ss_pred cceeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCC
Confidence 45666666666554422 22333344555544333
No 39
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.01 E-value=1.6e+02 Score=25.92 Aligned_cols=93 Identities=8% Similarity=0.036 Sum_probs=54.2
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChh----hHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHH
Q 009767 75 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEE----NVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT 150 (526)
Q Consensus 75 GnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee----~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l~ 150 (526)
+.+.-|+++.+.+-...+....+|+.-|... .+.. .+.-|=.+++.||+.+...-..+.+|+.+ |..++
T Consensus 35 ~~~leicD~I~~~~~~~k~a~ral~krl~~~----~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~---Lvk~~ 107 (157)
T 1elk_A 35 ALNMEICDIINETEEGPKDALRAVKKRIVGN----KNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV---LVRTI 107 (157)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH---THHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH---HHHHh
Confidence 3455677777776566666666666666521 2333 33344445556688887533344555553 33333
Q ss_pred h-CCCCChhHHHHHHHHHHHHhCCC
Q 009767 151 T-NSQLVPRLRFMIHDVLDLRANNW 174 (526)
Q Consensus 151 ~-~~~ls~Rirfmi~dvidlR~~~W 174 (526)
. ....+..||-.|..+|+.+...+
T Consensus 108 ~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 108 LPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp STTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 2 33456789999999998866544
Done!