Query 009768
Match_columns 526
No_of_seqs 148 out of 231
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 17:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 4.8E-35 1E-39 258.5 15.9 110 411-520 2-111 (111)
2 PF03763 Remorin_C: Remorin, C 96.7 0.034 7.4E-07 50.1 11.9 79 434-512 3-81 (111)
3 PRK09174 F0F1 ATP synthase sub 83.9 27 0.00058 34.6 13.1 44 460-503 134-177 (204)
4 TIGR01933 hflK HflK protein. H 77.1 22 0.00047 35.3 10.2 7 414-420 155-161 (261)
5 PRK13454 F0F1 ATP synthase sub 74.7 38 0.00082 32.6 10.8 49 455-503 107-155 (181)
6 cd03404 Band_7_HflK Band_7_Hfl 70.5 35 0.00075 33.9 9.7 33 477-509 207-239 (266)
7 PRK13455 F0F1 ATP synthase sub 66.0 78 0.0017 30.3 10.8 72 438-509 86-158 (184)
8 PRK14475 F0F1 ATP synthase sub 65.9 81 0.0018 29.8 10.8 73 437-509 68-141 (167)
9 PRK06569 F0F1 ATP synthase sub 65.6 1.3E+02 0.0029 29.0 12.9 62 432-494 42-103 (155)
10 PRK07353 F0F1 ATP synthase sub 64.8 94 0.002 28.0 10.6 48 455-502 81-128 (140)
11 PRK00247 putative inner membra 64.7 1.1E+02 0.0024 33.9 12.9 15 453-467 336-350 (429)
12 PF10376 Mei5: Double-strand r 64.2 72 0.0016 32.3 10.5 61 436-497 129-189 (221)
13 COG5269 ZUO1 Ribosome-associat 62.4 48 0.0011 35.2 9.1 84 426-509 231-314 (379)
14 CHL00118 atpG ATP synthase CF0 60.6 1.5E+02 0.0032 27.8 13.1 65 439-503 82-146 (156)
15 KOG4661 Hsp27-ERE-TATA-binding 59.7 30 0.00064 39.9 7.5 37 423-459 623-659 (940)
16 PRK05759 F0F1 ATP synthase sub 59.3 1.4E+02 0.003 27.4 10.8 42 460-501 85-126 (156)
17 PRK13461 F0F1 ATP synthase sub 58.8 1.3E+02 0.0028 28.0 10.6 34 467-500 93-126 (159)
18 PRK14474 F0F1 ATP synthase sub 58.4 1E+02 0.0022 31.3 10.6 56 419-478 43-100 (250)
19 PRK14471 F0F1 ATP synthase sub 57.5 1.4E+02 0.003 27.9 10.6 50 460-509 89-139 (164)
20 PRK06231 F0F1 ATP synthase sub 57.5 1.3E+02 0.0027 29.8 10.8 48 462-509 131-179 (205)
21 PF10211 Ax_dynein_light: Axon 57.4 2E+02 0.0043 28.2 12.8 81 429-510 96-183 (189)
22 KOG1103 Predicted coiled-coil 57.4 89 0.0019 34.3 10.3 48 441-488 155-212 (561)
23 PRK09173 F0F1 ATP synthase sub 57.0 1.5E+02 0.0033 27.5 10.7 47 463-509 86-133 (159)
24 PF00430 ATP-synt_B: ATP synth 56.3 1.2E+02 0.0026 26.6 9.5 29 464-492 84-112 (132)
25 TIGR03321 alt_F1F0_F0_B altern 56.2 1.7E+02 0.0036 29.4 11.6 10 420-429 44-53 (246)
26 PRK14472 F0F1 ATP synthase sub 56.1 1.8E+02 0.004 27.5 13.1 90 420-509 57-149 (175)
27 PRK13453 F0F1 ATP synthase sub 55.9 1.9E+02 0.0041 27.5 11.6 73 437-509 76-149 (173)
28 PF09755 DUF2046: Uncharacteri 55.7 2.9E+02 0.0063 29.7 14.2 79 413-492 81-159 (310)
29 PRK13460 F0F1 ATP synthase sub 55.2 1.6E+02 0.0035 27.9 10.8 90 420-509 55-147 (173)
30 TIGR01069 mutS2 MutS2 family p 54.8 2.5E+02 0.0055 33.2 14.3 19 420-438 507-525 (771)
31 PRK06231 F0F1 ATP synthase sub 54.0 2.3E+02 0.005 28.0 14.0 23 456-478 147-169 (205)
32 PRK13428 F0F1 ATP synthase sub 53.5 2.4E+02 0.0052 31.0 13.1 50 460-509 82-132 (445)
33 PRK13455 F0F1 ATP synthase sub 53.2 2.1E+02 0.0046 27.3 14.0 18 461-478 131-148 (184)
34 PRK13428 F0F1 ATP synthase sub 53.0 3.4E+02 0.0073 29.9 14.2 34 454-487 98-131 (445)
35 PRK13460 F0F1 ATP synthase sub 52.0 2.2E+02 0.0047 27.1 14.0 14 462-475 121-134 (173)
36 PRK14473 F0F1 ATP synthase sub 51.4 2E+02 0.0043 26.9 10.6 90 420-509 47-139 (164)
37 PRK00409 recombination and DNA 51.0 2.7E+02 0.0058 33.0 13.7 36 451-486 553-588 (782)
38 PRK00409 recombination and DNA 50.7 2.1E+02 0.0046 33.8 12.9 43 450-492 541-583 (782)
39 PRK13453 F0F1 ATP synthase sub 50.7 2.3E+02 0.005 27.0 14.0 17 461-477 122-138 (173)
40 CHL00019 atpF ATP synthase CF0 50.5 2.4E+02 0.0051 27.1 14.0 46 458-503 103-148 (184)
41 PTZ00121 MAEBL; Provisional 50.5 2E+02 0.0043 37.0 12.6 9 383-391 1261-1269(2084)
42 PTZ00121 MAEBL; Provisional 49.8 2.4E+02 0.0053 36.2 13.3 20 440-459 1598-1617(2084)
43 PRK14475 F0F1 ATP synthase sub 47.1 2.5E+02 0.0055 26.5 14.0 34 454-487 107-140 (167)
44 PRK10930 FtsH protease regulat 46.4 1.4E+02 0.003 32.9 10.0 46 463-508 262-307 (419)
45 PRK07352 F0F1 ATP synthase sub 45.3 2.7E+02 0.0059 26.3 14.0 72 437-508 77-149 (174)
46 TIGR03319 YmdA_YtgF conserved 45.3 5E+02 0.011 29.4 15.2 10 437-446 75-84 (514)
47 COG3064 TolA Membrane protein 45.0 4.5E+02 0.0098 28.7 14.0 34 420-453 156-189 (387)
48 TIGR01144 ATP_synt_b ATP synth 44.6 2.4E+02 0.0053 25.6 10.8 67 445-511 39-105 (147)
49 CHL00019 atpF ATP synthase CF0 44.6 2.9E+02 0.0063 26.4 13.1 14 477-490 111-124 (184)
50 KOG3654 Uncharacterized CH dom 44.5 60 0.0013 37.0 6.8 42 444-496 398-441 (708)
51 PRK07352 F0F1 ATP synthase sub 44.3 2.8E+02 0.0061 26.2 13.1 12 456-467 74-85 (174)
52 KOG4848 Extracellular matrix-a 43.4 3.4E+02 0.0073 27.7 11.1 76 421-498 132-214 (225)
53 KOG0577 Serine/threonine prote 43.1 1.8E+02 0.0039 34.4 10.4 84 418-501 815-902 (948)
54 PRK06568 F0F1 ATP synthase sub 42.8 2.4E+02 0.0052 27.1 9.8 63 454-516 75-142 (154)
55 TIGR03319 YmdA_YtgF conserved 42.8 5.4E+02 0.012 29.1 16.0 6 457-462 80-85 (514)
56 TIGR00570 cdk7 CDK-activating 42.4 4.5E+02 0.0097 28.2 12.5 70 412-481 116-191 (309)
57 PRK08476 F0F1 ATP synthase sub 42.4 2.8E+02 0.0061 25.6 13.8 36 465-500 82-117 (141)
58 PF08232 Striatin: Striatin fa 41.9 2.1E+02 0.0045 26.7 9.0 60 408-471 12-71 (134)
59 KOG0163 Myosin class VI heavy 41.5 3.5E+02 0.0076 32.8 12.4 25 461-485 950-974 (1259)
60 TIGR01069 mutS2 MutS2 family p 41.4 4.4E+02 0.0095 31.2 13.5 7 4-10 79-85 (771)
61 PF11559 ADIP: Afadin- and alp 40.5 2.2E+02 0.0049 26.2 9.1 38 432-469 112-149 (151)
62 KOG2412 Nuclear-export-signal 40.3 2.8E+02 0.006 32.1 11.1 25 474-498 250-274 (591)
63 cd07663 BAR_SNX5 The Bin/Amphi 40.2 4.2E+02 0.0091 27.0 12.9 38 410-449 121-161 (218)
64 PF15290 Syntaphilin: Golgi-lo 40.2 2E+02 0.0043 30.7 9.4 56 420-488 104-165 (305)
65 PRK12704 phosphodiesterase; Pr 39.8 6.1E+02 0.013 28.7 15.9 7 437-443 81-87 (520)
66 PRK08476 F0F1 ATP synthase sub 39.4 3.2E+02 0.0068 25.3 12.8 44 451-494 57-100 (141)
67 PTZ00491 major vault protein; 38.2 3.4E+02 0.0074 32.8 11.9 49 413-461 703-751 (850)
68 KOG2129 Uncharacterized conser 37.6 1.6E+02 0.0034 33.1 8.6 35 454-488 144-178 (552)
69 KOG4326 Mitochondrial F1F0-ATP 37.6 1.3E+02 0.0028 26.3 6.3 25 431-455 32-56 (81)
70 PRK06568 F0F1 ATP synthase sub 37.3 3.9E+02 0.0083 25.7 10.8 17 455-471 58-74 (154)
71 KOG0742 AAA+-type ATPase [Post 37.1 6.9E+02 0.015 28.7 20.1 27 306-332 27-53 (630)
72 KOG3540 Beta amyloid precursor 35.9 7.4E+02 0.016 28.6 14.6 102 408-512 260-388 (615)
73 KOG2072 Translation initiation 35.8 7.9E+02 0.017 30.1 14.1 12 452-463 771-782 (988)
74 PRK14474 F0F1 ATP synthase sub 35.6 4.9E+02 0.011 26.5 14.0 26 455-480 103-128 (250)
75 PF11875 DUF3395: Domain of un 35.0 1.4E+02 0.0031 28.2 7.0 41 460-500 9-49 (151)
76 PF04012 PspA_IM30: PspA/IM30 34.1 4.5E+02 0.0097 25.5 12.3 24 423-446 50-73 (221)
77 PRK02292 V-type ATP synthase s 33.5 3.5E+02 0.0075 25.7 9.4 23 457-479 35-57 (188)
78 KOG4715 SWI/SNF-related matrix 33.3 5.8E+02 0.013 27.9 11.6 47 432-479 222-271 (410)
79 PF13124 DUF3963: Protein of u 33.3 20 0.00043 27.3 0.8 10 163-172 13-22 (40)
80 KOG1029 Endocytic adaptor prot 32.8 7.6E+02 0.017 30.2 13.3 39 413-454 328-366 (1118)
81 KOG1962 B-cell receptor-associ 32.6 2.5E+02 0.0055 28.7 8.6 56 447-511 152-207 (216)
82 CHL00118 atpG ATP synthase CF0 32.1 4.3E+02 0.0092 24.7 13.8 46 451-496 72-117 (156)
83 PF12127 YdfA_immunity: SigmaW 31.7 90 0.0019 33.2 5.4 47 470-516 231-278 (316)
84 KOG3756 Pinin (desmosome-assoc 31.4 7.2E+02 0.016 27.1 12.3 28 491-518 213-240 (340)
85 PF10186 Atg14: UV radiation r 31.1 5.3E+02 0.011 25.5 13.2 6 461-466 99-104 (302)
86 PF09731 Mitofilin: Mitochondr 31.0 7.9E+02 0.017 27.5 14.5 18 461-478 334-351 (582)
87 TIGR03321 alt_F1F0_F0_B altern 30.7 5.7E+02 0.012 25.7 14.0 24 458-481 106-129 (246)
88 PRK14473 F0F1 ATP synthase sub 30.2 4.6E+02 0.0099 24.5 14.0 27 456-482 107-133 (164)
89 PF05957 DUF883: Bacterial pro 30.2 3.5E+02 0.0076 23.1 9.5 54 451-504 3-56 (94)
90 KOG1029 Endocytic adaptor prot 30.0 5.3E+02 0.012 31.4 11.5 46 420-466 412-457 (1118)
91 PF12128 DUF3584: Protein of u 29.4 9.2E+02 0.02 30.0 14.1 42 425-466 657-698 (1201)
92 PRK03963 V-type ATP synthase s 28.5 2.4E+02 0.0052 26.9 7.4 26 450-475 18-43 (198)
93 KOG4055 Uncharacterized conser 28.3 2.8E+02 0.0061 28.0 7.9 34 469-502 108-141 (213)
94 PRK12705 hypothetical protein; 28.2 9.4E+02 0.02 27.5 12.9 8 418-425 55-62 (508)
95 PF06034 DUF919: Nucleopolyhed 27.8 1.3E+02 0.0029 25.1 4.7 41 436-476 20-61 (62)
96 KOG0163 Myosin class VI heavy 27.7 7E+02 0.015 30.5 11.9 13 7-19 255-268 (1259)
97 PRK09174 F0F1 ATP synthase sub 27.6 6.2E+02 0.013 25.1 13.5 58 448-505 100-157 (204)
98 COG1390 NtpE Archaeal/vacuolar 27.4 3.5E+02 0.0075 26.8 8.4 25 460-484 39-63 (194)
99 PF05103 DivIVA: DivIVA protei 26.7 30 0.00064 30.6 0.9 59 450-509 43-101 (131)
100 PF11554 DUF3232: Protein of u 25.7 2.4E+02 0.0052 27.4 6.7 58 427-487 51-108 (152)
101 PF06936 Selenoprotein_S: Sele 25.6 5.9E+02 0.013 25.4 9.7 9 508-516 160-168 (190)
102 PRK11029 FtsH protease regulat 25.5 2.4E+02 0.0051 30.2 7.4 22 478-499 262-283 (334)
103 cd03404 Band_7_HflK Band_7_Hfl 25.2 6.8E+02 0.015 24.8 11.1 13 456-468 208-220 (266)
104 PF07352 Phage_Mu_Gam: Bacteri 25.0 2.2E+02 0.0048 26.5 6.4 41 421-461 14-54 (149)
105 PRK13665 hypothetical protein; 24.9 1.7E+02 0.0037 31.1 6.0 47 470-516 236-283 (316)
106 KOG0338 ATP-dependent RNA heli 24.6 3.8E+02 0.0083 31.2 9.0 45 419-465 557-606 (691)
107 PRK01194 V-type ATP synthase s 24.3 6.6E+02 0.014 24.4 12.2 8 463-470 41-48 (185)
108 PF10147 CR6_interact: Growth 24.3 7.8E+02 0.017 25.2 13.7 73 425-499 125-204 (217)
109 PRK07353 F0F1 ATP synthase sub 23.9 5.4E+02 0.012 23.2 13.9 13 455-467 59-71 (140)
110 PRK11637 AmiB activator; Provi 23.8 9.4E+02 0.02 26.0 13.8 16 450-465 72-87 (428)
111 PF12925 APP_E2: E2 domain of 23.8 7.6E+02 0.017 24.9 10.4 66 432-499 39-105 (193)
112 PF06428 Sec2p: GDP/GTP exchan 23.4 5.5E+02 0.012 23.1 8.4 39 444-482 6-44 (100)
113 PF10211 Ax_dynein_light: Axon 23.4 7.1E+02 0.015 24.4 13.3 42 472-513 138-179 (189)
114 PRK14471 F0F1 ATP synthase sub 23.2 6.2E+02 0.013 23.6 14.0 29 452-480 103-131 (164)
115 PF05529 Bap31: B-cell recepto 23.0 6.7E+02 0.015 24.0 9.7 74 420-494 114-187 (192)
116 PF05010 TACC: Transforming ac 22.5 8.1E+02 0.018 24.7 13.7 77 427-503 93-178 (207)
117 PRK08404 V-type ATP synthase s 22.4 5.6E+02 0.012 22.8 9.0 41 466-506 45-85 (103)
118 PF12777 MT: Microtubule-bindi 22.0 6.3E+02 0.014 26.6 9.7 8 509-516 109-116 (344)
119 PRK12472 hypothetical protein; 21.7 1.3E+03 0.027 26.7 12.9 51 446-496 232-290 (508)
120 KOG4364 Chromatin assembly fac 21.6 1E+03 0.023 28.5 11.7 18 471-488 343-360 (811)
121 KOG2357 Uncharacterized conser 21.5 2.9E+02 0.0063 30.9 7.2 18 284-301 230-247 (440)
122 PF11600 CAF-1_p150: Chromatin 21.1 8.1E+02 0.018 24.2 22.4 23 478-500 150-172 (216)
123 PRK08475 F0F1 ATP synthase sub 20.8 7.3E+02 0.016 23.6 13.1 25 455-479 94-118 (167)
124 PRK01558 V-type ATP synthase s 20.6 6E+02 0.013 24.9 8.6 56 457-512 4-63 (198)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=4.8e-35 Score=258.50 Aligned_cols=110 Identities=51% Similarity=0.742 Sum_probs=107.4
Q ss_pred HHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 411 RIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAA 490 (526)
Q Consensus 411 k~~~EsrAaAWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~ 490 (526)
+..++++++|||++|++|+++||+|++++|++|||+||+|||++|+|+|++||+||++++|||+|+|+.||++||++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCCCCCC
Q 009768 491 AEARKSRDAERTAAQGEYIRQTGQIPSSHF 520 (526)
Q Consensus 491 AEA~r~ee~~Ka~EkA~kiR~TGk~Pss~f 520 (526)
++++|++++++++++|++||+||++|++||
T Consensus 82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~f 111 (111)
T PF03763_consen 82 AEARRGEEIAKAEEKAAKIRATGKVPSKCF 111 (111)
T ss_pred HHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence 999999999999999999999999999765
No 2
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.65 E-value=0.034 Score=50.10 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 009768 434 KREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQT 512 (526)
Q Consensus 434 qREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~T 512 (526)
+..+++|.+||..+++|+....++.|.++.-==..--.|..-+|..+..+.|.+|+.+.++-.+.+..+..+|+-.|..
T Consensus 3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999987742222222333445666778899999999999999999988888887764
No 3
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=83.88 E-value=27 Score=34.57 Aligned_cols=44 Identities=34% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009768 460 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 503 (526)
Q Consensus 460 ~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~ 503 (526)
...+..+..+.+.+...++.++...+..|..+...-...+..++
T Consensus 134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A 177 (204)
T PRK09174 134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETA 177 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555556666666555555555555544444443
No 4
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=77.07 E-value=22 Score=35.27 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.9
Q ss_pred HHHhhhh
Q 009768 414 YEKRASA 420 (526)
Q Consensus 414 ~EsrAaA 420 (526)
++.+..|
T Consensus 155 ~~~~~~a 161 (261)
T TIGR01933 155 FDDVIIA 161 (261)
T ss_pred HHHHHHH
Confidence 4444443
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=74.71 E-value=38 Score=32.62 Aligned_cols=49 Identities=33% Similarity=0.300 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009768 455 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 503 (526)
Q Consensus 455 mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~ 503 (526)
....+...+..+..+.+.....++.++..-+..|..+...-...+..++
T Consensus 107 ~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA 155 (181)
T PRK13454 107 RAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTA 155 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555556666666666666666666555555544443
No 6
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=70.47 E-value=35 Score=33.91 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009768 477 ISMSRQRSEEKRAAAEARKSRDAERTAAQGEYI 509 (526)
Q Consensus 477 LA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~ki 509 (526)
++.|+..|+..+..|++.+.....+++-.|+.|
T Consensus 207 ~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~ 239 (266)
T cd03404 207 VPKARGEAARIIQEAEAYKEEVIAEAQGEAARF 239 (266)
T ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455555555555555555555555444444
No 7
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=65.96 E-value=78 Score=30.25 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 438 IKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 438 aKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
.++..+...-+.-.+...+..+...++.+..+.......++.++...+..|..+...-..++...+ +.|.++
T Consensus 86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~ki 158 (184)
T PRK13455 86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADV 158 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333334444455556666666666666777777766666666666666655544 444444
No 8
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=65.87 E-value=81 Score=29.77 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 437 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 437 EaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
+.++..+...-..-.+......+...+..++.+.+.....+..++...+..|..+...-..++...+ +.|.++
T Consensus 68 e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~ki 141 (167)
T PRK14475 68 KAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETV 141 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333333344444555555555566666666666666666666666666666554 445544
No 9
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=65.56 E-value=1.3e+02 Score=28.98 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 432 RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEAR 494 (526)
Q Consensus 432 RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~ 494 (526)
|.++-...|..=+. .|++|+......|..|..-|.++.+-.......+...|+..|+.+++.
T Consensus 42 R~~~I~~~L~~Ae~-~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 42 RQTNIQDNITQADT-LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333 344555555556666666666655555555555666666666666555
No 10
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=64.83 E-value=94 Score=28.01 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009768 455 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERT 502 (526)
Q Consensus 455 mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka 502 (526)
....+...+.+++.+.+.....+..++...+..+..+...-..++...
T Consensus 81 ~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~l 128 (140)
T PRK07353 81 EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDAL 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444433
No 11
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=64.68 E-value=1.1e+02 Score=33.87 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 009768 453 AEMRRIEAEVEQIRA 467 (526)
Q Consensus 453 A~mrKiE~KLEkkRA 467 (526)
.+-+|.|.|.+||+-
T Consensus 336 ~~~~~~~~k~~~k~~ 350 (429)
T PRK00247 336 RTAEKNEAKARKKEI 350 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444455555443
No 12
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=64.23 E-value=72 Score=32.28 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009768 436 EEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 497 (526)
Q Consensus 436 EEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~e 497 (526)
++-+++.|+. .|++.+.+++..+..|.+.....+.+++|.+..++..-.+||..++..-.+
T Consensus 129 ~~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~e 189 (221)
T PF10376_consen 129 EELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYE 189 (221)
T ss_pred chhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788877 678999999999999999999999999999999999999999877665443
No 13
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=48 Score=35.20 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=50.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009768 426 KSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 505 (526)
Q Consensus 426 kaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~Ek 505 (526)
+-|...--.+++.+|..||-+--|.+++.....-..-++.|+....+-.--++.+.++|.|....+.......+.-+..-
T Consensus 231 RIK~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~kd 310 (379)
T COG5269 231 RIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKD 310 (379)
T ss_pred chhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 33555555678899999998887766655443322223666666666666667777777766555544444444444444
Q ss_pred HHHH
Q 009768 506 GEYI 509 (526)
Q Consensus 506 A~ki 509 (526)
++++
T Consensus 311 ~~yf 314 (379)
T COG5269 311 ADYF 314 (379)
T ss_pred hccc
Confidence 4444
No 14
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=60.60 E-value=1.5e+02 Score=27.75 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009768 439 KIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 503 (526)
Q Consensus 439 KI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~ 503 (526)
++..+...-+.-.+..-...+...+..+..+.+.....+..++...+..+..+...-..++...+
T Consensus 82 ~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA 146 (156)
T CHL00118 82 ELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLS 146 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444555555555555555555555554444444433
No 15
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=59.74 E-value=30 Score=39.86 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 423 EAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 459 (526)
Q Consensus 423 eAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE 459 (526)
-.|+..+..+-.+|+..-.+||-..++..++++-+||
T Consensus 623 ~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle 659 (940)
T KOG4661|consen 623 AEERQRIREEREREQRRKAAVEREELERLKAERLRLE 659 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888999988888887776666
No 16
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=59.27 E-value=1.4e+02 Score=27.40 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009768 460 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAER 501 (526)
Q Consensus 460 ~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~K 501 (526)
...+..+..+.+.....+..++...+..+..+...-..++..
T Consensus 85 ~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~ 126 (156)
T PRK05759 85 QIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVAD 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 17
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=58.81 E-value=1.3e+02 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009768 467 AQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 500 (526)
Q Consensus 467 A~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~ 500 (526)
..+.+.....+..++...+..+..+...-..++.
T Consensus 93 ~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~ 126 (159)
T PRK13461 93 KEAHEEADLIIERAKLEAQREKEKAEYEIKNQAV 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433334444444444333333
No 18
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.39 E-value=1e+02 Score=31.29 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=24.3
Q ss_pred hhHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 419 SAWAEAEKSKHIARFKRE--EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKIS 478 (526)
Q Consensus 419 aAWEeAEkaK~~~RyqRE--EaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA 478 (526)
...++++..+..+.-.++ +.++..++... ..-+.....+.++.|.+++++.+.++.
T Consensus 43 ~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea----~~ii~~A~~eA~~~~~~il~~A~~ea~ 100 (250)
T PRK14474 43 NRWQDAEQRQQEAGQEAERYRQKQQSLEQQR----ASFMAQAQEAADEQRQHLLNEAREDVA 100 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777765554432222 33344443332 333333344444444444444444333
No 19
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=57.52 E-value=1.4e+02 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 460 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 460 ~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
...+..+..+.+.....++.++...+..++.+...-..++...+ +.|.++
T Consensus 89 ~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~ki 139 (164)
T PRK14471 89 KMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKV 139 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666666666666666555555544 444444
No 20
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.49 E-value=1.3e+02 Score=29.82 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 462 VEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 462 LEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
.+.....+.+.....+..++...+..++.+...-..++...+ +.|.++
T Consensus 131 ~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~ki 179 (205)
T PRK06231 131 KSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEEL 179 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555544 444443
No 21
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.40 E-value=2e+02 Score=28.21 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009768 429 HIARFKREEIKIQAWESRQKAKLEA-------EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAER 501 (526)
Q Consensus 429 ~~~RyqREEaKI~AWEN~QKAKAEA-------~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~K 501 (526)
..++|+..-..-.++-..+...++. ++..++.+++....+ +..+.+++..+.+..++.++..+.++.+++..
T Consensus 96 ~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~-~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~ 174 (189)
T PF10211_consen 96 TLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQ-VQELKNKCEQLEKREEELRQEEEKKHQEEIDF 174 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444444333334433 333333333333322 23466778888888888888888877777776
Q ss_pred HHHHHHHHh
Q 009768 502 TAAQGEYIR 510 (526)
Q Consensus 502 a~EkA~kiR 510 (526)
.+..-..++
T Consensus 175 lk~~~~ql~ 183 (189)
T PF10211_consen 175 LKKQNQQLK 183 (189)
T ss_pred HHHHHHHHH
Confidence 655544443
No 22
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=57.36 E-value=89 Score=34.32 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 009768 441 QAWESRQKAKLEAEMRRIEAEVEQIRAQAQ----------AKMVKKISMSRQRSEEKR 488 (526)
Q Consensus 441 ~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~----------EK~~NKLA~a~rkAEEkR 488 (526)
..+|-.+|.|||-+-+|+|+.||..|.+-. .|+.+|++....+|++.-
T Consensus 155 iEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~ 212 (561)
T KOG1103|consen 155 IEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIM 212 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 468889999999999999999976664421 577888888888888743
No 23
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=56.96 E-value=1.5e+02 Score=27.53 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 463 EQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 463 EkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
+..+..+.+-+...+..++...+..|..+...-..++...+ +.|.++
T Consensus 86 ~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~ki 133 (159)
T PRK09173 86 AEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKL 133 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444555555555555555555555544 444443
No 24
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=56.28 E-value=1.2e+02 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 464 QIRAQAQAKMVKKISMSRQRSEEKRAAAE 492 (526)
Q Consensus 464 kkRA~a~EK~~NKLA~a~rkAEEkRA~AE 492 (526)
.++..+.+.+...+..++...+..+..+.
T Consensus 84 ~~~~ea~~~~~~~~~~a~~~i~~e~~~a~ 112 (132)
T PF00430_consen 84 EILAEAEKEAERIIEQAEAEIEQEKEKAK 112 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333333333333
No 25
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=56.17 E-value=1.7e+02 Score=29.40 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.9
Q ss_pred hHHHHHHhhH
Q 009768 420 AWAEAEKSKH 429 (526)
Q Consensus 420 AWEeAEkaK~ 429 (526)
.-++++..+-
T Consensus 44 ~l~~Ae~~~~ 53 (246)
T TIGR03321 44 ELADADTKKR 53 (246)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 26
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=56.06 E-value=1.8e+02 Score=27.49 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=39.5
Q ss_pred hHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009768 420 AWAEAEKSKHIA--RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 497 (526)
Q Consensus 420 AWEeAEkaK~~~--RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~e 497 (526)
..++++..+-.. ....-+.++..++..-..-.+..-...+...+..++.+.+.....+..++...+..+..+...-..
T Consensus 57 ~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~ 136 (175)
T PRK14472 57 SIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRN 136 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443332 222223444444433333333333333444444444445555555555555555555555544444
Q ss_pred HHHHHH-HHHHHH
Q 009768 498 DAERTA-AQGEYI 509 (526)
Q Consensus 498 e~~Ka~-EkA~ki 509 (526)
++...+ +.|.++
T Consensus 137 ~i~~lA~~~a~ki 149 (175)
T PRK14472 137 EVADLAVKGAEKI 149 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 444433 333333
No 27
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=55.93 E-value=1.9e+02 Score=27.55 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 437 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 437 EaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
+.++..++.....-.+......+...+...+.+.+.....++.++...+..+..+...-..++...+ ..|.++
T Consensus 76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kl 149 (173)
T PRK13453 76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKV 149 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444444444555555556666666666666666666666666666555555544 444444
No 28
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.68 E-value=2.9e+02 Score=29.65 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=52.1
Q ss_pred HHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 413 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAE 492 (526)
Q Consensus 413 ~~EsrAaAWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AE 492 (526)
.+-+|+.+ -..|+.-+...|+++|.-++-=-..+-.+...+--.+|..||+.....+.+|+.+|..+.+.-..+....+
T Consensus 81 ~LlKkl~~-l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le 159 (310)
T PF09755_consen 81 TLLKKLQQ-LKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE 159 (310)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444545 34566777789999988888544444455555555677788888888888888888887654444443333
No 29
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=55.17 E-value=1.6e+02 Score=27.90 Aligned_cols=90 Identities=8% Similarity=0.037 Sum_probs=53.6
Q ss_pred hHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009768 420 AWAEAEKSKHIA--RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 497 (526)
Q Consensus 420 AWEeAEkaK~~~--RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~e 497 (526)
..++++..+-.. ....-+.++..++..-..-.+...+..+...+..+..+.+.....+..++...+..+..+...-..
T Consensus 55 ~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ 134 (173)
T PRK13460 55 DINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQN 134 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555433332 222224445555555555555555555666666777777777777777777777777777777777
Q ss_pred HHHHHH-HHHHHH
Q 009768 498 DAERTA-AQGEYI 509 (526)
Q Consensus 498 e~~Ka~-EkA~ki 509 (526)
++...+ +.|.++
T Consensus 135 ei~~lA~~~a~ki 147 (173)
T PRK13460 135 QIVEMTITIASKV 147 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 766655 444443
No 30
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.80 E-value=2.5e+02 Score=33.18 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=9.1
Q ss_pred hHHHHHHhhHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEI 438 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEa 438 (526)
..+..+..++..+.+++..
T Consensus 507 ~~~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEK 525 (771)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3444455555554444433
No 31
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=53.95 E-value=2.3e+02 Score=27.98 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009768 456 RRIEAEVEQIRAQAQAKMVKKIS 478 (526)
Q Consensus 456 rKiE~KLEkkRA~a~EK~~NKLA 478 (526)
.+.+.++|+.+..+.+.++..+.
T Consensus 147 ~~A~~~Ie~Ek~~a~~~Lk~ei~ 169 (205)
T PRK06231 147 FQARQEIEKERRELKEQLQKESV 169 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 32
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=53.54 E-value=2.4e+02 Score=31.05 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009768 460 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 509 (526)
Q Consensus 460 ~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 509 (526)
...+.++..+.+.....+..++...+..|..+...-..++...+ +.|.++
T Consensus 82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~ki 132 (445)
T PRK13428 82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGEL 132 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555544443 444444
No 33
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=53.25 E-value=2.1e+02 Score=27.32 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009768 461 EVEQIRAQAQAKMVKKIS 478 (526)
Q Consensus 461 KLEkkRA~a~EK~~NKLA 478 (526)
.++..|.+++..++..+.
T Consensus 131 ~I~~ek~~a~~~l~~~i~ 148 (184)
T PRK13455 131 QIASAEAAAVKAVRDRAV 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444433333
No 34
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=53.03 E-value=3.4e+02 Score=29.94 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 454 EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 487 (526)
Q Consensus 454 ~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEk 487 (526)
.+.+.+.++|+.|.++++.+++++..+--.+-++
T Consensus 98 i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~k 131 (445)
T PRK13428 98 IKVQGARQVQLLRAQLTRQLRLELGHESVRQAGE 131 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456777777777777777776655444443
No 35
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=52.03 E-value=2.2e+02 Score=27.05 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 009768 462 VEQIRAQAQAKMVK 475 (526)
Q Consensus 462 LEkkRA~a~EK~~N 475 (526)
++..|.+++..+++
T Consensus 121 ie~e~~~a~~el~~ 134 (173)
T PRK13460 121 IELAKGKALSQLQN 134 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 36
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=51.44 E-value=2e+02 Score=26.89 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=41.6
Q ss_pred hHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009768 420 AWAEAEKSKHIAR--FKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 497 (526)
Q Consensus 420 AWEeAEkaK~~~R--yqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~e 497 (526)
..++++..+-... -..-+..+..+...-+.-.+......+...+.....+.+.....+..++...+..+..+...-..
T Consensus 47 ~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~ 126 (164)
T PRK14473 47 SLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKS 126 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443321 11223334444333333333333334444444455555555555555555555555555555555
Q ss_pred HHHHHH-HHHHHH
Q 009768 498 DAERTA-AQGEYI 509 (526)
Q Consensus 498 e~~Ka~-EkA~ki 509 (526)
++...+ +.|.++
T Consensus 127 ~i~~la~~~a~ki 139 (164)
T PRK14473 127 QIADLVTLTASRV 139 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 555444 444443
No 37
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.03 E-value=2.7e+02 Score=32.98 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 451 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEE 486 (526)
Q Consensus 451 AEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEE 486 (526)
.+.+.++++.+-++...++.+++..-|+.+++.+++
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444443
No 38
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.72 E-value=2.1e+02 Score=33.78 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 450 KLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAE 492 (526)
Q Consensus 450 KAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AE 492 (526)
+..+++++++.+||+++.++.++....+..+++.|++.-..+.
T Consensus 541 ~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666555444443
No 39
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=50.66 E-value=2.3e+02 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009768 461 EVEQIRAQAQAKMVKKI 477 (526)
Q Consensus 461 KLEkkRA~a~EK~~NKL 477 (526)
.+++.+..+++.++..+
T Consensus 122 ~I~~ek~~a~~~l~~ei 138 (173)
T PRK13453 122 EINSQKERAIADINNQV 138 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 40
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.52 E-value=2.4e+02 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009768 458 IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 503 (526)
Q Consensus 458 iE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~ 503 (526)
.+...+.....+.+.+...+..++...+..+..+...-..++...+
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~la 148 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLA 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555555555554443
No 41
>PTZ00121 MAEBL; Provisional
Probab=50.52 E-value=2e+02 Score=37.01 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=5.7
Q ss_pred ccccccccc
Q 009768 383 NIAAWASKD 391 (526)
Q Consensus 383 ~IaaWaske 391 (526)
.+|.||.+.
T Consensus 1261 r~a~~A~r~ 1269 (2084)
T PTZ00121 1261 RMAHFARRQ 1269 (2084)
T ss_pred HHHHHHHHh
Confidence 466677665
No 42
>PTZ00121 MAEBL; Provisional
Probab=49.83 E-value=2.4e+02 Score=36.25 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009768 440 IQAWESRQKAKLEAEMRRIE 459 (526)
Q Consensus 440 I~AWEN~QKAKAEA~mrKiE 459 (526)
+.-+|..+++|||..-++-|
T Consensus 1598 ~~~~~~~~~~kae~~kk~ee 1617 (2084)
T PTZ00121 1598 MKLYEEEKKMKAEEAKKAEE 1617 (2084)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 34466667777776555444
No 43
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=47.12 E-value=2.5e+02 Score=26.47 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 454 EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 487 (526)
Q Consensus 454 ~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEk 487 (526)
.+...+..+++.|.++++.+++.+..+--.+-++
T Consensus 107 ~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~k 140 (167)
T PRK14475 107 RAEMAERKIAQAEAQAAADVKAAAVDLAAQAAET 140 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666677777766666655554444
No 44
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=46.43 E-value=1.4e+02 Score=32.86 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009768 463 EQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEY 508 (526)
Q Consensus 463 EkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~k 508 (526)
++.+.++...-..-+..|+..|+...+.|+|.+.+.+++++-.|+.
T Consensus 262 ~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r 307 (419)
T PRK10930 262 QQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR 307 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444444444444555666666666666666666666666655544
No 45
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.35 E-value=2.7e+02 Score=26.33 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHH
Q 009768 437 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEY 508 (526)
Q Consensus 437 EaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~k 508 (526)
+.++..|...-..-.+..-...+...+..+..+.+.+...+..++...+..+..+...-..++...+ +.|.+
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~k 149 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAES 149 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555443333333333334444444445555555555555555555555555555555544433 44443
No 46
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.34 E-value=5e+02 Score=29.35 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 009768 437 EIKIQAWESR 446 (526)
Q Consensus 437 EaKI~AWEN~ 446 (526)
+.+|+..|+.
T Consensus 75 e~rL~qrE~r 84 (514)
T TIGR03319 75 RNELQRLERR 84 (514)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 47
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=45.00 E-value=4.5e+02 Score=28.74 Aligned_cols=34 Identities=38% Similarity=0.247 Sum_probs=13.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEA 453 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA 453 (526)
+=+|+++.|...-.+++-..+.-=+..-++|||+
T Consensus 156 a~aEA~k~Ka~aeAkkkAe~a~kA~eeAkaKAe~ 189 (387)
T COG3064 156 AAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333333333444444
No 48
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=44.58 E-value=2.4e+02 Score=25.56 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 009768 445 SRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 511 (526)
Q Consensus 445 N~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~ 511 (526)
...+.+|+..+...+.+|+.-|..+.+-+..--..+.+..++.++.+++....-...+......-+.
T Consensus 39 ~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~ 105 (147)
T TIGR01144 39 ERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKE 105 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 49
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.57 E-value=2.9e+02 Score=26.43 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 009768 477 ISMSRQRSEEKRAA 490 (526)
Q Consensus 477 LA~a~rkAEEkRA~ 490 (526)
++.++..|+..++.
T Consensus 111 l~~A~~ea~~~~~~ 124 (184)
T CHL00019 111 INQAKEDLERLENY 124 (184)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 50
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=44.46 E-value=60 Score=37.01 Aligned_cols=42 Identities=40% Similarity=0.557 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009768 444 ESRQKAKLEAEMRR--IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKS 496 (526)
Q Consensus 444 EN~QKAKAEA~mrK--iE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ 496 (526)
|..|+..-||+.|| +|.+.|++|.+ ++|+|||-|+..|..+.
T Consensus 398 ekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~keee~a 441 (708)
T KOG3654|consen 398 EKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEEEVA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhhhhh
Confidence 44555555565554 55666666644 56777777766665443
No 51
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=44.34 E-value=2.8e+02 Score=26.22 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 009768 456 RRIEAEVEQIRA 467 (526)
Q Consensus 456 rKiE~KLEkkRA 467 (526)
...+.+|+.-|.
T Consensus 74 ~~~~~~L~~a~~ 85 (174)
T PRK07352 74 AEAQQKLAQAQQ 85 (174)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 52
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=43.36 E-value=3.4e+02 Score=27.72 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=40.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 009768 421 WAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ-------AKMVKKISMSRQRSEEKRAAAEA 493 (526)
Q Consensus 421 WEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~-------EK~~NKLA~a~rkAEEkRA~AEA 493 (526)
.-+++++|++.+|-...++.++=--.+-++|.|+..++|.-++..+...- +++..= .-++.++++++.-|+
T Consensus 132 ~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~em--LqqkEkeekK~~Kea 209 (225)
T KOG4848|consen 132 FREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEM--LQQKEKEEKKAVKEA 209 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 45677788877777666665554444555555555555443333332110 111111 124556777777777
Q ss_pred HhhhH
Q 009768 494 RKSRD 498 (526)
Q Consensus 494 ~r~ee 498 (526)
+|.+.
T Consensus 210 Krk~k 214 (225)
T KOG4848|consen 210 KRKEK 214 (225)
T ss_pred HHHHH
Confidence 76554
No 53
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.09 E-value=1.8e+02 Score=34.41 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=60.5
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 418 ASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRI----EAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEA 493 (526)
Q Consensus 418 AaAWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKi----E~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA 493 (526)
.+.|.++|---+....+.|..-+.|.++.-|+.+|++.++. |..+--.|+-+.+||-.+++.++..--+.--+...
T Consensus 815 lde~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~e 894 (948)
T KOG0577|consen 815 LDEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLE 894 (948)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhh
Confidence 35788899888888999999999999999999888776554 44444568888888888887776544333334555
Q ss_pred HhhhHHHH
Q 009768 494 RKSRDAER 501 (526)
Q Consensus 494 ~r~ee~~K 501 (526)
++..++..
T Consensus 895 r~~~e~e~ 902 (948)
T KOG0577|consen 895 RHAREIEA 902 (948)
T ss_pred hhHHHHhh
Confidence 55444433
No 54
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=42.81 E-value=2.4e+02 Score=27.10 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhcCCCC
Q 009768 454 EMRRIEAEVEQIRAQAQAKMVKK----ISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYIRQTGQIP 516 (526)
Q Consensus 454 ~mrKiE~KLEkkRA~a~EK~~NK----LA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~kiR~TGk~P 516 (526)
-|+..+...++.+..+.++.... ++.+++..+..|..|-..-..++.... +-|.+|-..-++.
T Consensus 75 Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~~~~ 142 (154)
T PRK06568 75 MIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLS 142 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444445555555444444 444444455455555555455544443 5666665554444
No 55
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=42.80 E-value=5.4e+02 Score=29.06 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.3
Q ss_pred HHHHHH
Q 009768 457 RIEAEV 462 (526)
Q Consensus 457 KiE~KL 462 (526)
+.|.+|
T Consensus 80 qrE~rL 85 (514)
T TIGR03319 80 RLERRL 85 (514)
T ss_pred HHHHHH
Confidence 333333
No 56
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.42 E-value=4.5e+02 Score=28.23 Aligned_cols=70 Identities=9% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 412 IEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQ------KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 481 (526)
Q Consensus 412 ~~~EsrAaAWEeAEkaK~~~RyqREEaKI~AWEN~Q------KAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~ 481 (526)
..+++++..|+...+..|...-.+....-..-+..+ +.+-...++++|.+=...|...-+.+.++|+...
T Consensus 116 ~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~~~~~~~~~~~ld~L~~s~ 191 (309)
T TIGR00570 116 ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELETST 191 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 458889999999888777754333322222222222 1111122223333333334555566667776533
No 57
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=42.40 E-value=2.8e+02 Score=25.65 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009768 465 IRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 500 (526)
Q Consensus 465 kRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~ 500 (526)
.+..+.+.....++.++..++..+..+.++-..+..
T Consensus 82 a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~ 117 (141)
T PRK08476 82 AIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQ 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555444444444444433
No 58
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=41.89 E-value=2.1e+02 Score=26.68 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 408 ELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQA 471 (526)
Q Consensus 408 e~~k~~~EsrAaAWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~E 471 (526)
+|.+-+.+. .+||. |++...+|.-..|....+.||+++.- ...++-||-.|-+.|+++..
T Consensus 12 Ew~r~ErdR--~~Wei-ERaEmkarIa~LEGE~r~~e~l~~dL-~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 12 EWHRFERDR--NQWEI-ERAEMKARIAFLEGERRGQENLKKDL-KRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHH--HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 444444433 67884 77888899999999999999998754 66788888888888887654
No 59
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.50 E-value=3.5e+02 Score=32.81 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 461 EVEQIRAQAQAKMVKKISMSRQRSE 485 (526)
Q Consensus 461 KLEkkRA~a~EK~~NKLA~a~rkAE 485 (526)
..|++|+++.-.++.|++..+++|+
T Consensus 950 ~ee~k~~k~e~e~kRK~eEeqr~~q 974 (1259)
T KOG0163|consen 950 EEEKKRAKAEMETKRKAEEEQRKAQ 974 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556666666666666666554
No 60
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.41 E-value=4.4e+02 Score=31.25 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=3.6
Q ss_pred CCCChhh
Q 009768 4 GIISPSK 10 (526)
Q Consensus 4 g~~SP~k 10 (526)
+.++|..
T Consensus 79 ~~l~~~e 85 (771)
T TIGR01069 79 GIVKGLE 85 (771)
T ss_pred CcCChHH
Confidence 4455654
No 61
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.53 E-value=2.2e+02 Score=26.17 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 432 RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQA 469 (526)
Q Consensus 432 RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a 469 (526)
..+.+..+...|-...+++.+.+|||.|.++++++.++
T Consensus 112 ~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677778888888888888888888888877665
No 62
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=40.27 E-value=2.8e+02 Score=32.08 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 009768 474 VKKISMSRQRSEEKRAAAEARKSRD 498 (526)
Q Consensus 474 ~NKLA~a~rkAEEkRA~AEA~r~ee 498 (526)
+.+++.+..+++++|..++.++..+
T Consensus 250 qekiR~~eekqeee~ke~e~~~~k~ 274 (591)
T KOG2412|consen 250 QEKIRAEEEKQEEERKEAEEQAEKE 274 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666554443
No 63
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=40.24 E-value=4.2e+02 Score=27.00 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHhhh---hHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 009768 410 ERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKA 449 (526)
Q Consensus 410 ~k~~~EsrAa---AWEeAEkaK~~~RyqREEaKI~AWEN~QKA 449 (526)
.|..+..|+. .|+.++++-...|++ ..+|..||..++.
T Consensus 121 ~K~ll~rR~ral~~~e~A~~~L~KaR~k--~kev~~aE~~~~e 161 (218)
T cd07663 121 AKDLLYRRARALADYENSNKALDKARLK--SKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 3444444543 678888777777764 4556777777664
No 64
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.21 E-value=2e+02 Score=30.69 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=39.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAK------MVKKISMSRQRSEEKR 488 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK------~~NKLA~a~rkAEEkR 488 (526)
.|=|.| ..|-||...-= .|..+|++|..-+|-||+.++|| |...|..-.+|-|-.-
T Consensus 104 DWIEEE-------CHRVEAQLALK------EARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 104 DWIEEE-------CHRVEAQLALK------EARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHHH-------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHH
Confidence 587766 56666665432 35667889999999999988866 6666666666666543
No 65
>PRK12704 phosphodiesterase; Provisional
Probab=39.83 E-value=6.1e+02 Score=28.75 Aligned_cols=7 Identities=14% Similarity=0.155 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 009768 437 EIKIQAW 443 (526)
Q Consensus 437 EaKI~AW 443 (526)
+.+|+.-
T Consensus 81 e~~L~qr 87 (520)
T PRK12704 81 RNELQKL 87 (520)
T ss_pred HHHHHHH
Confidence 3333333
No 66
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=39.38 E-value=3.2e+02 Score=25.34 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 451 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEAR 494 (526)
Q Consensus 451 AEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~ 494 (526)
++......|..|..-|.++..-...-++.++..++..++.+.+.
T Consensus 57 a~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~ 100 (141)
T PRK08476 57 VSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAE 100 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333
No 67
>PTZ00491 major vault protein; Provisional
Probab=38.23 E-value=3.4e+02 Score=32.84 Aligned_cols=49 Identities=31% Similarity=0.277 Sum_probs=39.9
Q ss_pred HHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 413 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAE 461 (526)
Q Consensus 413 ~~EsrAaAWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~K 461 (526)
++++..+|=|-+-.+|..+...-|-+.|.+=-+.+.|+.+|+-.+||..
T Consensus 703 el~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ 751 (850)
T PTZ00491 703 ELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAE 751 (850)
T ss_pred HHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhH
Confidence 4555667888888899999999999999988888888888888887753
No 68
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=37.60 E-value=1.6e+02 Score=33.08 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 454 EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKR 488 (526)
Q Consensus 454 ~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkR 488 (526)
+-=++|.-||+.+.....|++|||...+-+---+.
T Consensus 144 ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq 178 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQ 178 (552)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 33456777888888888888888877665544333
No 69
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=37.57 E-value=1.3e+02 Score=26.27 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 431 ARFKREEIKIQAWESRQKAKLEAEM 455 (526)
Q Consensus 431 ~RyqREEaKI~AWEN~QKAKAEA~m 455 (526)
++....+++|..|+.++||++.|++
T Consensus 32 ~~l~~~~e~~Rei~a~eKav~da~~ 56 (81)
T KOG4326|consen 32 RQLREYHEDIREIDAHEKAVADAEE 56 (81)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 4556668899999999999988754
No 70
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.26 E-value=3.9e+02 Score=25.73 Aligned_cols=17 Identities=6% Similarity=0.302 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009768 455 MRRIEAEVEQIRAQAQA 471 (526)
Q Consensus 455 mrKiE~KLEkkRA~a~E 471 (526)
+...|.+|..-|.++.+
T Consensus 58 ~~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 58 FEQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444444
No 71
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.13 E-value=6.9e+02 Score=28.66 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=14.8
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCC
Q 009768 306 PSRTATPVGATTPLRSPTSSIPSTPRG 332 (526)
Q Consensus 306 pSRt~TP~~attP~rsp~~s~~stP~~ 332 (526)
-||-++|.-+++|.-+-.+..+++|+.
T Consensus 27 d~~f~~~~fs~sp~~~~pp~~~~~~~s 53 (630)
T KOG0742|consen 27 DSRFGFPGFSASPPPPLPPAQPGAPGS 53 (630)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 356778877777632223344444543
No 72
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=35.85 E-value=7.4e+02 Score=28.60 Aligned_cols=102 Identities=19% Similarity=0.306 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhhHHHHHH---------hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 408 ELERIEYEKRASAWAEAEK---------SKHIARFKREEIKIQAWE----SRQKAKLEAEMRRIEAEVEQIRAQAQAKMV 474 (526)
Q Consensus 408 e~~k~~~EsrAaAWEeAEk---------aK~~~RyqREEaKI~AWE----N~QKAKAEA~mrKiE~KLEkkRA~a~EK~~ 474 (526)
+-.+..++.-...|+++|. .-++.+||+. +.+-| +..+.-.|..+.+.|.=|--+|.-|+|-|.
T Consensus 260 ekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~---v~sLEee~a~erqqlvetH~~RV~AmlNdrrR~Ale~yl 336 (615)
T KOG3540|consen 260 EKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKT---VSSLEEEAARERQQLVETHEARVEAMLNDRRRDALENYL 336 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344455555668998873 2234455543 33333 233344677788888888888888888887
Q ss_pred HHHHH----HHH---------HHHHHHHHHHHHhhhHHHHHH-HHHHHHhhc
Q 009768 475 KKISM----SRQ---------RSEEKRAAAEARKSRDAERTA-AQGEYIRQT 512 (526)
Q Consensus 475 NKLA~----a~r---------kAEEkRA~AEA~r~ee~~Ka~-EkA~kiR~T 512 (526)
.-|+. .|+ +||+|--+-.-++.++++++- +||+.||.+
T Consensus 337 aALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqmk~q 388 (615)
T KOG3540|consen 337 AALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQ 388 (615)
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 76653 233 455555555666777777775 788888754
No 73
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=35.81 E-value=7.9e+02 Score=30.12 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 009768 452 EAEMRRIEAEVE 463 (526)
Q Consensus 452 EA~mrKiE~KLE 463 (526)
+.++.+.|.+||
T Consensus 771 ~e~~~~~ea~le 782 (988)
T KOG2072|consen 771 EEKLKQFEARLE 782 (988)
T ss_pred HHHHHHHHHHHH
Confidence 344555555555
No 74
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=35.61 E-value=4.9e+02 Score=26.49 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 455 MRRIEAEVEQIRAQAQAKMVKKISMS 480 (526)
Q Consensus 455 mrKiE~KLEkkRA~a~EK~~NKLA~a 480 (526)
+.+....++..+.+++..+++++...
T Consensus 103 ~~~a~~~ie~Ek~~a~~~L~~~v~~l 128 (250)
T PRK14474 103 RDEWLEQLEREKQEFFKALQQQTGQQ 128 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555443
No 75
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=35.02 E-value=1.4e+02 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009768 460 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 500 (526)
Q Consensus 460 ~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~ 500 (526)
.++++.|....+.+..+.+.+....+.|+..++.++..|..
T Consensus 9 ~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~ 49 (151)
T PF11875_consen 9 REIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEE 49 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555555555556666666666555543
No 76
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=34.09 E-value=4.5e+02 Score=25.54 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=15.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 009768 423 EAEKSKHIARFKREEIKIQAWESR 446 (526)
Q Consensus 423 eAEkaK~~~RyqREEaKI~AWEN~ 446 (526)
.+...++..+|..-+..|..|+..
T Consensus 50 ~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 50 MANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777764
No 77
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=33.53 E-value=3.5e+02 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009768 457 RIEAEVEQIRAQAQAKMVKKISM 479 (526)
Q Consensus 457 KiE~KLEkkRA~a~EK~~NKLA~ 479 (526)
..+.+.++.+..+.++.......
T Consensus 35 ea~~~a~~i~~~~~~~a~~e~~~ 57 (188)
T PRK02292 35 EAEADAEEILEDREAEAEREIEQ 57 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333
No 78
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=33.30 E-value=5.8e+02 Score=27.91 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 009768 432 RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ---AKMVKKISM 479 (526)
Q Consensus 432 RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~---EK~~NKLA~ 479 (526)
|.+-.+..+++.--+|. |.||+|..||.+-+.++.+.+ +-|+|.|.+
T Consensus 222 RMqvlkrQv~SL~~HQ~-KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr 271 (410)
T KOG4715|consen 222 RMQVLKRQVQSLMVHQR-KLEAELLQIEERHQEKKRKFLESTDSFNNELKR 271 (410)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33444445555555553 677777777777764444443 345555544
No 79
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=33.27 E-value=20 Score=27.32 Aligned_cols=10 Identities=50% Similarity=1.162 Sum_probs=9.0
Q ss_pred chhHHHhhhh
Q 009768 163 WNDAEKWIMN 172 (526)
Q Consensus 163 WdDAeKWI~~ 172 (526)
.||-||||-|
T Consensus 13 fddiqkwirn 22 (40)
T PF13124_consen 13 FDDIQKWIRN 22 (40)
T ss_pred HHHHHHHHHH
Confidence 5899999988
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.82 E-value=7.6e+02 Score=30.18 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=18.7
Q ss_pred HHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 413 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 454 (526)
Q Consensus 413 ~~EsrAaAWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~ 454 (526)
++|.|--+-||-++..-..+.++| =..||..+++.-|++
T Consensus 328 ELerRRq~leeqqqreree~eqkE---reE~ekkererqEqE 366 (1118)
T KOG1029|consen 328 ELERRRQALEEQQQREREEVEQKE---REEEEKKERERQEQE 366 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 555666666665543332222222 234666666555544
No 81
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.55 E-value=2.5e+02 Score=28.65 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 009768 447 QKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 511 (526)
Q Consensus 447 QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~ 511 (526)
+.++..+++.++|.++|++ ...+|+.+++.....+.+|+. ..+-.+..|...++|.
T Consensus 152 ~~~~~~~~~~kL~~el~~~-~~~Le~~~~~~~al~Kq~e~~--------~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKK-QKKLEKAQKKVDALKKQSEGL--------QDEYDRLLEEYSKLQE 207 (216)
T ss_pred hHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHH
Confidence 3456666666666666643 334455555555555555543 2234444455554443
No 82
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=32.15 E-value=4.3e+02 Score=24.70 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009768 451 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKS 496 (526)
Q Consensus 451 AEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ 496 (526)
|+..+...|.+|..-|.++.+-+.+--+.+++..++.++.|++.-.
T Consensus 72 a~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~ 117 (156)
T CHL00118 72 ANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYID 117 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554444444444444444444443333
No 83
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=31.71 E-value=90 Score=33.22 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHhhcCCCC
Q 009768 470 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAA-QGEYIRQTGQIP 516 (526)
Q Consensus 470 ~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~E-kA~kiR~TGk~P 516 (526)
.+.-.-....+|.+||++||+|-|+..|-.+++.| +|+..-+-..+|
T Consensus 231 ~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkvVeAeaevP 278 (316)
T PF12127_consen 231 TDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKVVEAEAEVP 278 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhch
No 84
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=31.36 E-value=7.2e+02 Score=27.08 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=13.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCCCC
Q 009768 491 AEARKSRDAERTAAQGEYIRQTGQIPSS 518 (526)
Q Consensus 491 AEA~r~ee~~Ka~EkA~kiR~TGk~Pss 518 (526)
|+++...+=.-.-.++.++-+|-.-|..
T Consensus 213 a~~q~~e~w~~~~kk~s~~IRTKTkPhl 240 (340)
T KOG3756|consen 213 ALAQLFEEWNEHNKKISNYIRTKTKPHL 240 (340)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCce
Confidence 3444444333333445555555556663
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.10 E-value=5.3e+02 Score=25.46 Aligned_cols=6 Identities=50% Similarity=0.590 Sum_probs=2.4
Q ss_pred HHHHHH
Q 009768 461 EVEQIR 466 (526)
Q Consensus 461 KLEkkR 466 (526)
+|+.++
T Consensus 99 ~l~~~~ 104 (302)
T PF10186_consen 99 SLEQRR 104 (302)
T ss_pred HHHHHH
Confidence 333333
No 86
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.01 E-value=7.9e+02 Score=27.48 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009768 461 EVEQIRAQAQAKMVKKIS 478 (526)
Q Consensus 461 KLEkkRA~a~EK~~NKLA 478 (526)
+|++....+.+++.|.|.
T Consensus 334 eL~~~~~~~~~~l~~~l~ 351 (582)
T PF09731_consen 334 ELKRQEEAHEEHLKNELR 351 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 87
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.68 E-value=5.7e+02 Score=25.68 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 458 IEAEVEQIRAQAQAKMVKKISMSR 481 (526)
Q Consensus 458 iE~KLEkkRA~a~EK~~NKLA~a~ 481 (526)
....++..+..+++.+++++...-
T Consensus 106 a~~~ie~E~~~a~~~l~~ei~~la 129 (246)
T TIGR03321 106 WQEALRREQAALSDELRRRTGAEV 129 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555433
No 88
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=30.23 E-value=4.6e+02 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 456 RRIEAEVEQIRAQAQAKMVKKISMSRQ 482 (526)
Q Consensus 456 rKiE~KLEkkRA~a~EK~~NKLA~a~r 482 (526)
.+.+..+++.|..++..++..+..+--
T Consensus 107 ~~a~~~I~~ek~~a~~~L~~~i~~la~ 133 (164)
T PRK14473 107 EEARAQAEQERQRMLSELKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544433
No 89
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.17 E-value=3.5e+02 Score=23.11 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009768 451 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAA 504 (526)
Q Consensus 451 AEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~E 504 (526)
++.+|+.+-..++.......+...+++..+..++++.-..+..+-.+....+.+
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 56 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQARE 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667766666666666666666666665555444444443333333
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.99 E-value=5.3e+02 Score=31.38 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=30.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIR 466 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkR 466 (526)
.||.+.+..+.+.-.||...|.- +|.+|+..+.++.-|-.|+...-
T Consensus 412 ewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 412 EWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888877777776666666655 67777776666666555554443
No 91
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.42 E-value=9.2e+02 Score=29.96 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 425 EKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIR 466 (526)
Q Consensus 425 EkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkR 466 (526)
+.....+.....+.+|..|-...+.+++.++..++..++...
T Consensus 657 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 657 DLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777888888888888888888887776554443
No 92
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=28.54 E-value=2.4e+02 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 450 KLEAEMRRIEAEVEQIRAQAQAKMVK 475 (526)
Q Consensus 450 KAEA~mrKiE~KLEkkRA~a~EK~~N 475 (526)
+|+.-+...+.+.++....+.++...
T Consensus 18 ea~~il~~A~~~a~~i~~~a~~~a~~ 43 (198)
T PRK03963 18 KIEYILEEAQKEAEKIKEEARKRAES 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 93
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=2.8e+02 Score=28.04 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009768 469 AQAKMVKKISMSRQRSEEKRAAAEARKSRDAERT 502 (526)
Q Consensus 469 a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka 502 (526)
+.+-|+.+|..-++.||++-|.-.++|..+-.++
T Consensus 108 ~daefq~r~ek~~kaaEeKTaKKRaKRqk~Kq~a 141 (213)
T KOG4055|consen 108 LDAEFQIRLEKNQKAAEEKTAKKRAKRQKKKQKA 141 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666555555554444433
No 94
>PRK12705 hypothetical protein; Provisional
Probab=28.23 E-value=9.4e+02 Score=27.45 Aligned_cols=8 Identities=13% Similarity=-0.367 Sum_probs=4.1
Q ss_pred hhhHHHHH
Q 009768 418 ASAWAEAE 425 (526)
Q Consensus 418 AaAWEeAE 425 (526)
..||++..
T Consensus 55 ~~~~~~~~ 62 (508)
T PRK12705 55 LEAKELLL 62 (508)
T ss_pred HHHHHHHH
Confidence 34555544
No 95
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=27.80 E-value=1.3e+02 Score=25.13 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 436 EEIKIQAWESRQKA-KLEAEMRRIEAEVEQIRAQAQAKMVKK 476 (526)
Q Consensus 436 EEaKI~AWEN~QKA-KAEA~mrKiE~KLEkkRA~a~EK~~NK 476 (526)
-..+++-||-++|. |=-.+++.++.+|.++|...+.-..++
T Consensus 20 l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~FLn~~v~~ 61 (62)
T PF06034_consen 20 LTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNFLNFGVNN 61 (62)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778889998886 666789999999999999988876553
No 96
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.71 E-value=7e+02 Score=30.48 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=8.7
Q ss_pred Chhhhhhhh-cCCC
Q 009768 7 SPSKLRMKL-IGPH 19 (526)
Q Consensus 7 SP~kLR~~L-lG~~ 19 (526)
+|--||-|| ||.-
T Consensus 255 as~dl~~kL~L~~p 268 (1259)
T KOG0163|consen 255 ASPDLRKKLSLGKP 268 (1259)
T ss_pred CCHHHHHHhccCCc
Confidence 345688888 7754
No 97
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.63 E-value=6.2e+02 Score=25.14 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009768 448 KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 505 (526)
Q Consensus 448 KAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~Ek 505 (526)
+.+|+..+...|.+|..-|.++.+-+.+-...++..+++.+..+++.-......++.+
T Consensus 100 k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~ 157 (204)
T PRK09174 100 KQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEAR 157 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666655555555555555555555544444433333333
No 98
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=27.39 E-value=3.5e+02 Score=26.84 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 460 AEVEQIRAQAQAKMVKKISMSRQRS 484 (526)
Q Consensus 460 ~KLEkkRA~a~EK~~NKLA~a~rkA 484 (526)
.+++.+...++.++.++..+.++.+
T Consensus 39 ~~~~~~~~~~~~~~~~ea~~~~~~i 63 (194)
T COG1390 39 REAEEAIEEILRKAEKEAERERQRI 63 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 99
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=26.68 E-value=30 Score=30.60 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009768 450 KLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYI 509 (526)
Q Consensus 450 KAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~ki 509 (526)
.++.++..++.+|..-+. ..+.+.+.|..+++.|++..+.|+..-..-+..+...|..|
T Consensus 43 ~L~~~~~~l~~~l~~~~~-~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i 101 (131)
T PF05103_consen 43 ELKEEIEELQAQLEELRE-EEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEI 101 (131)
T ss_dssp HHHHHHHCCCCT------------------------------------------------
T ss_pred HHHHHHHHHHhhhhhhhh-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444433 24556666666666666666666665555555555555444
No 100
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=25.67 E-value=2.4e+02 Score=27.41 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 427 SKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 487 (526)
Q Consensus 427 aK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEk 487 (526)
.++..+.-++|..|+.|-+..-. .+.|-+-++|++-|..+++-+-..+..+.|.|+..
T Consensus 51 ~~Y~~~V~~mE~~l~t~rfrleg---eeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~ 108 (152)
T PF11554_consen 51 KEYVLIVYRMEDQLQTWRFRLEG---EEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKE 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCTS-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777788999999999876543 57889999999999999999999999999888754
No 101
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=25.56 E-value=5.9e+02 Score=25.38 Aligned_cols=9 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHhhcCCCC
Q 009768 508 YIRQTGQIP 516 (526)
Q Consensus 508 kiR~TGk~P 516 (526)
-+|..|.-|
T Consensus 160 ~lr~~~yNP 168 (190)
T PF06936_consen 160 PLRGSDYNP 168 (190)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 345555555
No 102
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=25.55 E-value=2.4e+02 Score=30.16 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 009768 478 SMSRQRSEEKRAAAEARKSRDA 499 (526)
Q Consensus 478 A~a~rkAEEkRA~AEA~r~ee~ 499 (526)
|.+.+.|...||..+|.+.+..
T Consensus 262 AeA~~~a~i~~aegeA~a~~~~ 283 (334)
T PRK11029 262 AEAERQGRIMRGEGDAEAAKLF 283 (334)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555555655555554443
No 103
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=25.17 E-value=6.8e+02 Score=24.83 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 009768 456 RRIEAEVEQIRAQ 468 (526)
Q Consensus 456 rKiE~KLEkkRA~ 468 (526)
.+.|.+.++++..
T Consensus 208 ~~A~~ea~~~~~~ 220 (266)
T cd03404 208 PKARGEAARIIQE 220 (266)
T ss_pred HHhHhHHHHHHHH
Confidence 3333344444443
No 104
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.02 E-value=2.2e+02 Score=26.46 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 421 WAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAE 461 (526)
Q Consensus 421 WEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~K 461 (526)
.-..+.+.+.+.+..+-+.|..|-..+.+.....+..+|..
T Consensus 14 ~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 14 ELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666665555555555543
No 105
>PRK13665 hypothetical protein; Provisional
Probab=24.91 E-value=1.7e+02 Score=31.13 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhcCCCC
Q 009768 470 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYIRQTGQIP 516 (526)
Q Consensus 470 ~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~kiR~TGk~P 516 (526)
.+.-.-....+|.+||++||+|-|+..|-.+++. .+|+..-+-..+|
T Consensus 236 ~dQAEADk~iAqAkAEeRRAmAvA~EQEmkA~v~emrAkvVeAeaeVP 283 (316)
T PRK13665 236 TDQAEADKRIAQAKAEERRAMAVALEQEMKAKVQEMRAKVVEAEAEVP 283 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhch
No 106
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.56 E-value=3.8e+02 Score=31.21 Aligned_cols=45 Identities=22% Similarity=0.099 Sum_probs=33.3
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 009768 419 SAWAEAEKSKHIARFKREEIKIQAWESR-----QKAKLEAEMRRIEAEVEQI 465 (526)
Q Consensus 419 aAWEeAEkaK~~~RyqREEaKI~AWEN~-----QKAKAEA~mrKiE~KLEkk 465 (526)
-.|+. ..|+..+...+|-.|++--.. +-.+||++|+|-|..||..
T Consensus 557 i~~~~--Iek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g 606 (691)
T KOG0338|consen 557 IPPEV--IEKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHG 606 (691)
T ss_pred CCHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Confidence 36776 457888888899888876444 3458889999998888643
No 107
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=24.34 E-value=6.6e+02 Score=24.38 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 009768 463 EQIRAQAQ 470 (526)
Q Consensus 463 EkkRA~a~ 470 (526)
++.+..+.
T Consensus 41 ~~~~~~~~ 48 (185)
T PRK01194 41 QSIKEYYE 48 (185)
T ss_pred HHHHHHHH
Confidence 33333333
No 108
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=24.30 E-value=7.8e+02 Score=25.20 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=39.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009768 425 EKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ-------AKMVKKISMSRQRSEEKRAAAEARKSR 497 (526)
Q Consensus 425 EkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~-------EK~~NKLA~a~rkAEEkRA~AEA~r~e 497 (526)
++++.+++|-...+++.+=...+++++.++-.+.|.-+|..|-+.- .+|+.-|+ ++..|++++.-++++..
T Consensus 125 ~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~--~kEkeeKKk~K~aKkk~ 202 (217)
T PF10147_consen 125 EIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQ--EKEKEEKKKKKEAKKKE 202 (217)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3444444555444444444445555666666666666666665442 34444443 55666777666666654
Q ss_pred HH
Q 009768 498 DA 499 (526)
Q Consensus 498 e~ 499 (526)
..
T Consensus 203 k~ 204 (217)
T PF10147_consen 203 KE 204 (217)
T ss_pred HH
Confidence 44
No 109
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.91 E-value=5.4e+02 Score=23.16 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 009768 455 MRRIEAEVEQIRA 467 (526)
Q Consensus 455 mrKiE~KLEkkRA 467 (526)
+...|.+|+.-|.
T Consensus 59 ~~~~e~~L~~a~~ 71 (140)
T PRK07353 59 EAQYEQQLASARK 71 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 110
>PRK11637 AmiB activator; Provisional
Probab=23.80 E-value=9.4e+02 Score=25.95 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 009768 450 KLEAEMRRIEAEVEQI 465 (526)
Q Consensus 450 KAEA~mrKiE~KLEkk 465 (526)
.++.++..++.+|+..
T Consensus 72 ~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 72 SLLAQLKKQEEAISQA 87 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555444
No 111
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=23.76 E-value=7.6e+02 Score=24.87 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 009768 432 RFKREEIKIQAWESRQKAKLEAEMRRIE-AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDA 499 (526)
Q Consensus 432 RyqREEaKI~AWEN~QKAKAEA~mrKiE-~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~ 499 (526)
.-+|+-.-+..|+....--- .|++.+ .+.|.++....++|+.++......+..-|-..++-+.+.+
T Consensus 39 hr~r~~~VmkeW~eaE~~~~--~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV 105 (193)
T PF12925_consen 39 HRERMTKVMKEWSEAEERYK--ELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRV 105 (193)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666788887654322 345555 7889999999999999999999988888877766655554
No 112
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.43 E-value=5.5e+02 Score=23.13 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 444 ESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQ 482 (526)
Q Consensus 444 EN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~r 482 (526)
|..++.+||....+++.+||..=+.+++--.+-++.+++
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~ 44 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMVADARR 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999887776655553
No 113
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.39 E-value=7.1e+02 Score=24.39 Aligned_cols=42 Identities=7% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Q 009768 472 KMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTG 513 (526)
Q Consensus 472 K~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TG 513 (526)
.+..+++.+..+.+......++.+..+..+-.+...++++.+
T Consensus 138 ~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 138 ELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555566666666554
No 114
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=23.15 E-value=6.2e+02 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 452 EAEMRRIEAEVEQIRAQAQAKMVKKISMS 480 (526)
Q Consensus 452 EA~mrKiE~KLEkkRA~a~EK~~NKLA~a 480 (526)
+..+.+.+..++..+..++..++..+..+
T Consensus 103 ~~~~~~a~~~i~~ek~~a~~~l~~~i~~l 131 (164)
T PRK14471 103 DKMIEQAKASIESEKNAAMAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555554443
No 115
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.96 E-value=6.7e+02 Score=23.98 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=39.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEAR 494 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~ 494 (526)
.|=-.-.-.+..++-+.++++.+....-+...++..+- ..+-+++-..-+++++++|..+....+..+.+++..
T Consensus 114 ~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 114 SLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL-LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655444333322221 222333344555666777777666666666665543
No 116
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=22.53 E-value=8.1e+02 Score=24.74 Aligned_cols=77 Identities=16% Similarity=0.337 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhh
Q 009768 427 SKHIARFKREEIKIQAW-ESRQKA-----KLEAEMRRIEAEVEQIRAQAQAKMV---KKISMSRQRSEEKRAAAEARKSR 497 (526)
Q Consensus 427 aK~~~RyqREEaKI~AW-EN~QKA-----KAEA~mrKiE~KLEkkRA~a~EK~~---NKLA~a~rkAEEkRA~AEA~r~e 497 (526)
+-+..||++....|..+ .|...- -..+.+++.+.+.+.+++++.++|. ..|+.+++.++.--+...|.-..
T Consensus 93 sdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 93 SDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667999999988887 443322 2356788888999999999998876 46777777766666666665555
Q ss_pred HHHHHH
Q 009768 498 DAERTA 503 (526)
Q Consensus 498 e~~Ka~ 503 (526)
...++.
T Consensus 173 ~e~~~~ 178 (207)
T PF05010_consen 173 EEMKVQ 178 (207)
T ss_pred HHHHHH
Confidence 544443
No 117
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=22.36 E-value=5.6e+02 Score=22.82 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009768 466 RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQG 506 (526)
Q Consensus 466 RA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA 506 (526)
...+.+....-|..+++.++..+..+-..-..++......|
T Consensus 45 i~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a 85 (103)
T PRK08404 45 IKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKA 85 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555554444333
No 118
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.01 E-value=6.3e+02 Score=26.64 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=2.5
Q ss_pred HhhcCCCC
Q 009768 509 IRQTGQIP 516 (526)
Q Consensus 509 iR~TGk~P 516 (526)
||..++-|
T Consensus 109 iks~~~PP 116 (344)
T PF12777_consen 109 IKSYANPP 116 (344)
T ss_dssp HHHSSS--
T ss_pred HHhhCCCc
Confidence 34444433
No 119
>PRK12472 hypothetical protein; Provisional
Probab=21.73 E-value=1.3e+03 Score=26.67 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009768 446 RQKAKLEAEMRRIEAEVEQI-----RAQ---AQAKMVKKISMSRQRSEEKRAAAEARKS 496 (526)
Q Consensus 446 ~QKAKAEA~mrKiE~KLEkk-----RA~---a~EK~~NKLA~a~rkAEEkRA~AEA~r~ 496 (526)
..|+.++++|...+..|+.- +++ ..++.-++++.+..+.+..++.+++++.
T Consensus 232 ~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 290 (508)
T PRK12472 232 RAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRA 290 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555555555555444322 222 2344455555555555555555555443
No 120
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=21.57 E-value=1e+03 Score=28.48 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009768 471 AKMVKKISMSRQRSEEKR 488 (526)
Q Consensus 471 EK~~NKLA~a~rkAEEkR 488 (526)
++...+...-+++++.++
T Consensus 343 ee~~rk~deerkK~e~ke 360 (811)
T KOG4364|consen 343 EEKSRKSDEERKKLESKE 360 (811)
T ss_pred HHHhhhhhhhhhhhhhhH
Confidence 333444444444444433
No 121
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=2.9e+02 Score=30.92 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=10.3
Q ss_pred ccccceecccCCcccccC
Q 009768 284 PAIRSVCMRDMGTEMTPV 301 (526)
Q Consensus 284 ~~vrsV~~RDmGTEMTPi 301 (526)
.+++..+++-|--||+-+
T Consensus 230 Av~tkk~~k~l~ke~~DL 247 (440)
T KOG2357|consen 230 AVGTKKAAKKLFKEMRDL 247 (440)
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 345555555566666653
No 122
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=21.14 E-value=8.1e+02 Score=24.23 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q 009768 478 SMSRQRSEEKRAAAEARKSRDAE 500 (526)
Q Consensus 478 A~a~rkAEEkRA~AEA~r~ee~~ 500 (526)
.....+.++++...++++..+..
T Consensus 150 e~~~~k~eek~~keeekr~~eE~ 172 (216)
T PF11600_consen 150 EEKEAKEEEKRKKEEEKRKKEEE 172 (216)
T ss_pred HHHHhHHHHHHHHHHHHHhhHHH
Confidence 33445556666555555544443
No 123
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.77 E-value=7.3e+02 Score=23.58 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 455 MRRIEAEVEQIRAQAQAKMVKKISM 479 (526)
Q Consensus 455 mrKiE~KLEkkRA~a~EK~~NKLA~ 479 (526)
+.....+.++.+..++++.+++...
T Consensus 94 i~~A~~eAe~~~~~ii~~A~~ea~~ 118 (167)
T PRK08475 94 VETAKKEAYILTQKIEKQTKDDIEN 118 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 124
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=20.61 E-value=6e+02 Score=24.86 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 009768 457 RIEAEVEQIRAQAQAKMVKK----ISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQT 512 (526)
Q Consensus 457 KiE~KLEkkRA~a~EK~~NK----LA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~T 512 (526)
+++.=+++++...+++-..+ |+.|+.+|++..+.|++.-.+-..+++..|+.+++.
T Consensus 4 ~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~ 63 (198)
T PRK01558 4 EVKDLINKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRH 63 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!