Query 009768
Match_columns 526
No_of_seqs 148 out of 231
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 12:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009768.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009768hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 20.6 2.1E+02 0.015 23.4 9.3 49 429-477 151-199 (237)
2 d1eh1a_ d.67.3.1 (A:) Ribosome 7.3 6E+02 0.043 21.2 8.2 52 420-472 118-171 (185)
3 d1gpja1 a.151.1.1 (A:303-404) 6.6 4.5E+02 0.033 19.5 6.0 48 429-478 5-52 (102)
4 d2clyb1 f.53.1.1 (B:4-123) ATP 5.4 2.3E+02 0.016 22.8 3.6 18 449-466 102-119 (120)
5 d2azea1 e.63.1.1 (A:199-346) T 5.0 7.7E+02 0.056 20.5 6.9 31 450-480 6-36 (148)
6 d1t92a_ d.24.1.3 (A:) Pullulan 4.7 3.8E+02 0.028 20.8 4.5 23 446-468 6-28 (108)
7 d3b8ma1 d.58.60.1 (A:64-330) E 3.8 1.1E+03 0.077 20.3 7.4 12 458-469 155-166 (267)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 3.8 6.1E+02 0.044 19.7 5.1 58 448-505 80-137 (144)
9 d1ugoa_ a.7.7.1 (A:) BAG-famil 3.6 6.7E+02 0.049 19.2 5.1 73 446-518 18-98 (99)
10 d1ge9a_ d.67.3.1 (A:) Ribosome 3.6 1E+03 0.075 19.6 8.0 59 420-482 119-179 (184)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.60 E-value=2.1e+02 Score=23.38 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 429 HIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKI 477 (526)
Q Consensus 429 ~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKL 477 (526)
....|........++.+.....++.+++..+.++|..+..+...|.+=+
T Consensus 151 ~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 151 HLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666788899999999999988888887644
No 2
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=7.35 E-value=6e+02 Score=21.24 Aligned_cols=52 Identities=29% Similarity=0.293 Sum_probs=31.6
Q ss_pred hHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEI--KIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAK 472 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEa--KI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK 472 (526)
+++..|.+|..-|--|.++ +|..++..+ .--|-..+++|.++++.=-.+..+
T Consensus 118 ~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~~~~ 171 (185)
T d1eh1a_ 118 VRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888998888877754 565554322 123566667766666554444333
No 3
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=6.58 E-value=4.5e+02 Score=19.52 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 429 HIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKIS 478 (526)
Q Consensus 429 ~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA 478 (526)
+..=...+-.....|-+ .-++.--|+.+-.++|..|..-++|..++|.
T Consensus 5 AE~II~ee~~~F~~w~~--~~~~~p~I~~lr~~~e~ir~~Elekal~kl~ 52 (102)
T d1gpja1 5 VEKLIEEELSTVEEELE--KLKERRLVADVAKSLHEIKDRELERALRRLK 52 (102)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33345566677777744 4456677888888888888888888887776
No 4
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.45 E-value=2.3e+02 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009768 449 AKLEAEMRRIEAEVEQIR 466 (526)
Q Consensus 449 AKAEA~mrKiE~KLEkkR 466 (526)
...++.|..+|.+||+++
T Consensus 102 ~~s~~rI~~lekeLe~ik 119 (120)
T d2clyb1 102 TQSKTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344555677777777765
No 5
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.96 E-value=7.7e+02 Score=20.48 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 450 KLEAEMRRIEAEVEQIRAQAQAKMVKKISMS 480 (526)
Q Consensus 450 KAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a 480 (526)
+.|++.+++...+++|++.+.|=++..++.-
T Consensus 6 ~Le~E~~~~~erI~~K~~~LqeLi~Q~iafk 36 (148)
T d2azea1 6 NLEVERQRRLERIKQKQSQLQELILQQIAFK 36 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777666666543
No 6
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.70 E-value=3.8e+02 Score=20.75 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009768 446 RQKAKLEAEMRRIEAEVEQIRAQ 468 (526)
Q Consensus 446 ~QKAKAEA~mrKiE~KLEkkRA~ 468 (526)
-+.++|.++|+.|+.-||.-|..
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~d 28 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKLD 28 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888899998887766543
No 7
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=1.1e+03 Score=20.27 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 009768 458 IEAEVEQIRAQA 469 (526)
Q Consensus 458 iE~KLEkkRA~a 469 (526)
++.++...+..+
T Consensus 155 l~~~~~~~~~~a 166 (267)
T d3b8ma1 155 EKEKLAQDRIKM 166 (267)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=3.76 E-value=6.1e+02 Score=19.71 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009768 448 KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 505 (526)
Q Consensus 448 KAKAEA~mrKiE~KLEkkRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~Ek 505 (526)
+.+++..|..+..+|+.......+++...+...+.+....-.....+....+.....+
T Consensus 80 r~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~k 137 (144)
T d1gs9a_ 80 QARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKR 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.63 E-value=6.7e+02 Score=19.18 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCC
Q 009768 446 RQKAKLEAEMRRIEAEVEQ--------IRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPS 517 (526)
Q Consensus 446 ~QKAKAEA~mrKiE~KLEk--------kRA~a~EK~~NKLA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TGk~Ps 517 (526)
.+-.++..++.+|+.+++. ...++.|-|++.|-.+.-+--+-...+...|...+.++..--+++=....-|+
T Consensus 18 ~~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~~LD~ka~~ps 97 (99)
T d1ugoa_ 18 SRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNASGPS 97 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q ss_pred C
Q 009768 518 S 518 (526)
Q Consensus 518 s 518 (526)
+
T Consensus 98 s 98 (99)
T d1ugoa_ 98 S 98 (99)
T ss_dssp C
T ss_pred C
No 10
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=3.62 E-value=1e+03 Score=19.57 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009768 420 AWAEAEKSKHIARFKREEIKIQAWESRQKAKL--EAEMRRIEAEVEQIRAQAQAKMVKKISMSRQ 482 (526)
Q Consensus 420 AWEeAEkaK~~~RyqREEaKI~AWEN~QKAKA--EA~mrKiE~KLEkkRA~a~EK~~NKLA~a~r 482 (526)
+++.+|.+|+.-|.-|.++. ..++|.+- |-..+++|.++++.=-.+.+++-.-++.-.+
T Consensus 119 ak~~~E~aKv~iRniR~~~~----~~lKk~k~iseD~~k~~~~~iqkltd~~~~~id~~~~~Kek 179 (184)
T d1ge9a_ 119 LHKITEEARVRVRNVRREAK----EMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEK 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!