BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009769
(526 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 213/424 (50%), Gaps = 17/424 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D R T++V G +R +R LD LI L ++ P L +I+++G Y++ LD
Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL--GDRPIGKQPPDLRRIVQLGLYQLRYLDQ 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK G +VNG+LR+ ++ L + + +L
Sbjct: 93 VPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQ-------EKISLGE 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W++ + + G+ E L + N +PS LR N K +R ++ L L +
Sbjct: 146 QYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNLTT 204
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
L + +R+ + Q EG VQD SA V +++PQP ++I D CAAPG
Sbjct: 205 TAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAAPG 264
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK- 404
GKT ++A + QG +YA D + RL+ L T + + S I+ DL V+
Sbjct: 265 GKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTS-IKIWEGDLTQPGVKPPVEL 323
Query: 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464
D+ LLD PCSGLG L + DLRW + + L LQ LL A + LVK GG LVYSTC
Sbjct: 324 VDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYSTC 383
Query: 465 SIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHSLDGAFAAR 521
+++P ENE ++E FL H ++ +P + P ++ VT G P H DG F A
Sbjct: 384 TLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTS-GMLTILPHHHHQDGFFIAN 442
Query: 522 LVRA 525
L +A
Sbjct: 443 LKKA 446
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 195 bits (496), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 216/389 (55%), Gaps = 16/389 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D++ L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+ ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 459
+ D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG L
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGGTL 377
Query: 460 VYSTCSIDPEENEERVEAFLLRHPEFSID 488
VYSTC++D EN+E + AF+ HP+F D
Sbjct: 378 VYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 219/420 (52%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R+ +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RQHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 218/420 (51%), Gaps = 38/420 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 511
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia
proteamaculans (strain 568) GN=rsmB PE=3 SV=1
Length = 429
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 208/415 (50%), Gaps = 28/415 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L K + + L +L +G Y+++
Sbjct: 34 KTISDKDRALLQELCFGTLRVLPQLEWCIQQLM--AKPMTGKQRTLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AV+ E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF---QRQQEELLQRAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ Y HP W+++R + Y Q E I + NN P LR N R TR D + + +
Sbjct: 141 SRYLHPSWLLKRIQQAYPAQWEQI--IDANNQKPPMWLRVN-RLHHTREDYLQLMEQAGI 197
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + +R+ G +G VQD SA V ++DPQ G+ I+D CAA
Sbjct: 198 AAEPHAEYRDAVRLLAPCAVTDLPGF-ADGWVTVQDASAQGCVDLLDPQDGEQILDLCAA 256
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++ + + V A+DI++ RL+ + E + ++++ ++ D RT
Sbjct: 257 PGGKTTHILEA-APKAHVMAVDIDEQRLKRVKENLQRLRLHAEVK--QGDGRTPQQWCGD 313
Query: 404 K-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+VY+
Sbjct: 314 KQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMVYA 373
Query: 463 TCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 511
TCSI P EN E+V AFL RH + ++ + P H GFF++ IK
Sbjct: 374 TCSILPAENAEQVSAFLQRHADARLVETGNQQQPGRQNLPHPEDGDGFFYAKLIK 428
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 218/423 (51%), Gaps = 31/423 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KSISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLK 282
+ Y HP W++ R K ++ +++ NN P LR N + +L+ Q N+
Sbjct: 141 SHYLHPSWLLAR-IKLAYPDQWQQILDANNQKPPMWLRVNRLHHSRIEYLELLKQANIEA 199
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+PH+ + +R+ T G + G VQD SA V ++DPQ G+ I+D CA
Sbjct: 200 LPHDF---YPDAVRLITPCAVSDLPGF-ELGWVTVQDASAQGCVDLLDPQDGEQILDLCA 255
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 401
APGGKT ++ + + V A+DI++ RL + E + ++++ +R D RT +
Sbjct: 256 APGGKTTHILEA-APKVHVLAVDIDEQRLSRVKENLQRLRLHADVRV--GDGRTPDEWCG 312
Query: 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+VY
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 462 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 521
+TCSI PEEN++++ FL RH E AD LV + V+ G + P DG + A+
Sbjct: 373 ATCSILPEENQQQIATFLQRHSE-----AD-LVETGTVSALG-RQNLPHPEDGDGFYYAK 425
Query: 522 LVR 524
L++
Sbjct: 426 LIK 428
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 206/421 (48%), Gaps = 30/421 (7%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L +D+ D+D L+ ++ G +R L+ I L K + + L ++ +G Y
Sbjct: 29 LPIHQRDVSDKDRALLQELCFGVLRVLPQLEWCIQQLM--AKPLTGKQRTLHYLIMVGIY 86
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +PP+A + E V A RP L+NG+LR+ ++ L + E +
Sbjct: 87 QLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQEE----LLQREATHSSH 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQ 277
Y HP W++ R ++ ++ NN P LR N A +L+MQ
Sbjct: 143 -------YLHPSWLLAR-IEHAYPNNWRGIVEANNQRPPMWLRVNRLHHTREAYLNLLMQ 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ PH + IR+ + V Q +G VQD SA V +DPQ G+ I
Sbjct: 195 GGIEAFPHT---EYSDAIRLASPC-AVDQLPGFSQGWATVQDASAQGCVYWLDPQDGEQI 250
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++ + + V A+D+++ RL + E Q+++ ++ D R
Sbjct: 251 LDLCAAPGGKTTHILEA-APKSHVLAVDVDETRLGRVKENLLRLQMHAEVK--QGDGRYP 307
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 456
+ D++LLDAPCS GV+ + D++W RR D+EEL LQ E+LDA +K G
Sbjct: 308 DSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPHLKTG 367
Query: 457 GVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPI 510
G +VY+TCSI P+EN ++V FL RH + + +D +P + H GFF++ +
Sbjct: 368 GTMVYATCSILPQENTQQVTGFLSRHADAALVDTGTSEIPGIQILPHADSGDGFFYAKLV 427
Query: 511 K 511
K
Sbjct: 428 K 428
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 205/412 (49%), Gaps = 26/412 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
+ D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++ +
Sbjct: 36 VSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTIHYLIMVGLYQLLYTRI 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
PP+A + E V A R L+NG+LR+ +D L + G D AR L
Sbjct: 94 PPHAALAETVEGAVAIKRMQFKGLINGVLRQFQRQQDEL---LAEFSGQD---ARWL--- 144
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
HP+W++ R+ +E + NN P LR N R+ +R + + L +
Sbjct: 145 --HPMWLLNRFQTAWPREWQAVVEA-NNERPPMWLRVN-RQHHSRDEWLKLLEENGMTGH 200
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ + +R+ G ++G VQD SA V ++ PQ G++I+D CAAPGG
Sbjct: 201 IHPRYPDAVRLDAPAPVSALPGF-EQGWVTVQDASAQGCVELLAPQNGETILDLCAAPGG 259
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++ + Q V A+D++ R+ + E K ++ + ++ + T + D
Sbjct: 260 KTTHILEA-APQASVMAVDVDAQRISRVYENLKRLKMKADVKVGDGRFPSTWCGET-QFD 317
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466
++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG L+Y+TCS+
Sbjct: 318 RILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSV 377
Query: 467 DPEENEERVEAFLLRHPEFSID-------PADGLVPSDFVTKHGFFFSDPIK 511
PEEN E++ AFL R P+ +D P +P GFF++ IK
Sbjct: 378 LPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGA-TEGDGFFYAKLIK 428
>sp|A8AQI3|RSMB_CITK8 Ribosomal RNA small subunit methyltransferase B OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmB PE=3 SV=1
Length = 428
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/418 (32%), Positives = 214/418 (51%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L L ++AR L
Sbjct: 91 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEAL----LAEFATSEARFL- 143
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
HP W+++R K Y Q EAI + NN P LR N R +R L+ +
Sbjct: 144 ----HPSWLLKRLQKSYPTQWEAI--VEANNQRPPMWLRVN-RTHHSRDSWLTLLQDAGM 196
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH S + D +R+++ G +EG VQD SA V+ + PQ G+ I+D
Sbjct: 197 NGFPH--SAYPDA-LRLESPAPVHALPGF-EEGWVTVQDASAQGCVSFLAPQNGEKILDL 252
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 399
CAAPGGKT ++ + + V A+D+++ RL + + K + + ++ D R A
Sbjct: 253 CAAPGGKTTHILEA-APEAQVLAVDVDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQW 309
Query: 400 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 459
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 310 CGEQKFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAIWPHLKSGGTL 369
Query: 460 VYSTCSIDPEENEERVEAFLLRHPEFSI----DPADGLVPS--DFVTKHGFFFSDPIK 511
VY+TCS+ PEEN +++ AFL R P+ ++ PA V + GFF++ IK
Sbjct: 370 VYATCSVLPEENSQQILAFLQRTPDATLTGTGTPAQPGVQNLPGAEEGDGFFYAKLIK 427
>sp|B4F1L5|RSMB_PROMH Ribosomal RNA small subunit methyltransferase B OS=Proteus
mirabilis (strain HI4320) GN=rsmB PE=3 SV=1
Length = 422
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 21/404 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ +I L +K + +L ++ +G Y+++
Sbjct: 34 KNISDKDKALLQELCFGTLRTLPQLEWIIQQLM--DKPLKGKQRILHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A +P L+NG+LR+ +D + + + + ND
Sbjct: 92 RVPAHAALAETVNGAIALKKPQLKGLINGVLRQFQRQQD---VLMERFQNND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+ Y HP W++ R K E ++ NN P LR N +R + L +
Sbjct: 141 SRYLHPSWLLTR-IKNAYPELWESIIEGNNQKPPMWLRVNQIHH-SREQYLALLEKEGIS 198
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H IR++T + G EG VQD SA ++ PQ + I+D CAAP
Sbjct: 199 AFSDDHHPNAIRLETPCNVHLLPGF-NEGWVTVQDRSAQRCAELLAPQNNEQILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V AIDI++ RL + E ++++ +++ D R + +
Sbjct: 258 GGKTTHILE-IAPKAHVLAIDIDEQRLARVKENLNRLKLHATVKS--GDGRYPEQWCANM 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR ED+ +L +Q E+L A +K GG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 507
CSI PEEN +++ AFL + D +P + + GFF++
Sbjct: 375 CSILPEENSQQIAAFLSSMQDAQCDYQHQCLPEQY-SGDGFFYA 417
>sp|C6DFR7|RSMB_PECCP Ribosomal RNA small subunit methyltransferase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmB PE=3
SV=1
Length = 429
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 207/422 (49%), Gaps = 32/422 (7%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L +++ ++D L+ ++ G +R L+ I L K + + L ++ +G Y
Sbjct: 29 LPVHQREVSEKDRALLQELCFGVLRVLPQLEWCIQQLM--AKPLTGKQRTLHYLIMVGIY 86
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +PP+A + E V A RP L+NG+LR+ ++ L + E N +
Sbjct: 87 QLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQEE----LIQREANHSSH 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQ 277
Y HP W++ R ++ ++ NN P LR N A +L+ Q
Sbjct: 143 -------YLHPSWLLAR-IEHAYPNHWQTIVEANNQRPPMWLRVNRLHHTREAYLNLLAQ 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ PH + IR+ + V Q +G VQD SA V +DPQ G+ I
Sbjct: 195 EGIEAFPHT---EFTDAIRLASPC-AVDQLPGFSQGWATVQDASAQGCVYWLDPQDGEQI 250
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++ + Q V A+DI++ RL + E Q+++ ++ D R +
Sbjct: 251 LDLCAAPGGKTTHILEA-APQSHVLAVDIDETRLGRVKENLLRLQMHAEVK--QGDGR-Y 306
Query: 398 ADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 455
D+ D++LLDAPCS GV+ + D++W RR D+EEL LQ E+ DA +K
Sbjct: 307 PDSWCEGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIFDAIWPHLKV 366
Query: 456 GGVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDP 509
GG +VY+TCSI P+EN ++V FL RH + + +D +P + H GFF++
Sbjct: 367 GGTMVYATCSILPQENAQQVTDFLTRHADATLVDTGTRELPGIQMLPHADGGDGFFYAKL 426
Query: 510 IK 511
+K
Sbjct: 427 VK 428
>sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmB PE=3 SV=1
Length = 431
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 206/416 (49%), Gaps = 30/416 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLEWLISKLM--ARPMTGKQRTVHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L E +R
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEALLAEFAEHENR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
Y HP W+++R + E+ +++ NN P LR N R +R + + LN +
Sbjct: 143 --YLHPKWLLKR-LQQAWPEQWQEIVEANNQRPPMWLRVN-RNHHSRDEWLALLNEAGLE 198
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ +R+ T G EG VQD SA + + P+ G+ I+D CAAP
Sbjct: 199 GFTHPDYPDAVRLATPAPVHALPGF-AEGWVTVQDASAQGCMRYLQPENGERILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--ST 402
GGKT ++ ++ Q V A+DI++ RL + + K V + ++ D R F +
Sbjct: 258 GGKTTHILE-VAPQAQVMAVDIDEQRLSRVYDNLKRLGVKAEVK--QGDGR-FPEQWCGN 313
Query: 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A +KPGG LVY+
Sbjct: 314 EQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYA 373
Query: 463 TCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
TCSI PEEN +++ AFL R P+ + P +P GFF++ IK
Sbjct: 374 TCSILPEENSQQIAAFLARTPDAELHATGTPASPGQQNLPG-VEEGDGFFYAKLIK 428
>sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransferase B OS=Enterobacter sp.
(strain 638) GN=rsmB PE=3 SV=1
Length = 428
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 194/385 (50%), Gaps = 34/385 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R + LI L + + + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLPQQEWLISKLM--SRPMTGKQRTIHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ R Q LA
Sbjct: 91 RIPPHAALAETVEGAVVIKRPQLKGLINGVLRQF-----------------QRQQEELLA 133
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ HP W+++R K Y + EAI + NN P LR N R TR + +
Sbjct: 134 EFADSDKRFLHPEWLLKRLQKAYPSKWEAI--VEANNQRPPMWLRVN-RNHHTRDEWLAL 190
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L ++ + IR+ + G ++G VQD SA + ++PQ G I
Sbjct: 191 LETAEMNGFTHDAYPDAIRLASPAPVQALPGF-EQGWVTVQDASAQGCMTYLEPQNGDHI 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++ ++ + V A+D+++ RL + + K + + ++ D RT
Sbjct: 250 LDLCAAPGGKTTHILE-IAPKASVMAVDVDEQRLSRVYDNLKRLGMKAEVK--QGDGRTP 306
Query: 398 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 456
+ + D++L+DAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPG
Sbjct: 307 GEWCGDEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQSEILDAVWPHLKPG 366
Query: 457 GVLVYSTCSIDPEENEERVEAFLLR 481
G LVY+TCS+ PEEN +++ AFL R
Sbjct: 367 GTLVYATCSVLPEENSQQIAAFLKR 391
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 206/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA VA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQKCVAFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
GGKT ++ + + V A+D+++ RL RI + +L +V + + D
Sbjct: 258 GGKTTHILEA-APEADVLAVDVDEQRLSRIYDNLKRLGMKATVKQGDGRYPAQWCDEQ-- 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++ AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENSAQINAFLQRTPDAALSETGTPDQPGQQNLPG-AEEGDGFFYAKLIK 428
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B OS=Salmonella typhi
GN=rsmB PE=3 SV=1
Length = 429
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 209/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B4SUR0|RSMB_SALNS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
newport (strain SL254) GN=rsmB PE=3 SV=1
Length = 429
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 209/413 (50%), Gaps = 32/413 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + RD L+ +I G +R L+ + L K + + ++ +G Y++ +
Sbjct: 38 QQIRPRDHALLQEICYGVLRQLPRLESISQALM--GKPLKGKQRVFHFLILVGLYQLSFM 95
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V A+ P L+N +LR +D EG D A
Sbjct: 96 RIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQ--RDQ--------EGLDAQATSHDA 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNLL 281
Y HP W+++ K E+ +++ NNS LR N + TRA+ L+ Q ++
Sbjct: 146 GRYGHPGWLLKL-LKESYPEQWQQIVEANNSKAPMWLRVNHQHH-TRAEYQALLEQAGIV 203
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++ + ++T +V Q EG +VQD +A L + + PQ G+ I+DCC
Sbjct: 204 TTPHAQA---EDALCLETPC-DVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400
AAPGGKT ++ + + V AID ++ RL+ + E L ++ + I D R
Sbjct: 260 AAPGGKTAHILE-RTPESQVVAIDCDETRLKRVREN--LQRLELTAQVICGDARYPQQWW 316
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR +D+ L LQ E+LDA +KPGG LV
Sbjct: 317 QGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLV 376
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI---DPAD---GLVPSDFVTKHGFFFS 507
Y+TCSI P+EN +V+AFL R P+ + DPA ++P + GF+++
Sbjct: 377 YATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILPGEEAMD-GFYYA 428
>sp|A9N8B3|RSMB_SALPB Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmB PE=3
SV=1
Length = 429
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 207/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 207/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q87KD3|RSMB_VIBPA Ribosomal RNA small subunit methyltransferase B OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmB PE=3 SV=1
Length = 427
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 209/420 (49%), Gaps = 35/420 (8%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ +I G +R+ L+ + L +K + + ++ +G Y++ + +P +
Sbjct: 35 RDHALLQEICYGALRYLPRLEMIANQLM--DKPLKGKQRVFHHLILVGIYQLSFMRIPAH 92
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V K P L+N +LR N L ++ ++ A Y H
Sbjct: 93 AAVGETVEGTKELKGPRLRGLINAVLRNY----QRNQEELDQMAVSNNAGK------YGH 142
Query: 230 PVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLLKVPH 285
P W+++ Y Q E+I + NN LR N + TR + + L N+ PH
Sbjct: 143 PSWLLKLLQDAYPQQWESI--VDANNQKAPMWLRVNHQHH-TRDEYLALLKNENIDSTPH 199
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
++ + I++ +V++ +G +VQD +A L + + PQ G+ I+DCCAAPG
Sbjct: 200 TEAM---DAIKLAAPC-DVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPG 255
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++ SG +V AID + RL+ ++E L ++N + + D R + +
Sbjct: 256 GKTAHILERTSGSEVV-AIDCDDTRLKRVHEN--LKRLNLQAKVVCGDARNPQEWWQGEQ 312
Query: 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464
D++LLDAPCS GV+ + D++W RR +D+ L LQ E+ DA +KPGG +VY+TC
Sbjct: 313 FDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATC 372
Query: 465 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 524
SI P+EN E+V+AFL R + + +D P + P + +DG + A L +
Sbjct: 373 SITPQENVEQVKAFLARTADAQLLDSDPDQPGRQIL--------PGEEDMDGFYYAVLTK 424
>sp|B5F7R5|RSMB_SALA4 Ribosomal RNA small subunit methyltransferase B OS=Salmonella agona
(strain SL483) GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA + PGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLNPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B4TXB2|RSMB_SALSV Ribosomal RNA small subunit methyltransferase B OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIDANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTSHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B4TJX9|RSMB_SALHS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
heidelberg (strain SL476) GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 207/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 206/424 (48%), Gaps = 46/424 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--IEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T + G +EG VQD SA +A + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHVLPGF-EEGWVTVQDASAQGCMAWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 454
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 365
Query: 455 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFS 507
GG+L+Y+TCS+ PEEN +++AFL R + + P +P GFF++
Sbjct: 366 SGGILIYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYA 424
Query: 508 DPIK 511
IK
Sbjct: 425 KLIK 428
>sp|C0PZV1|RSMB_SALPC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIDANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q57J62|RSMB_SALCH Ribosomal RNA small subunit methyltransferase B OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIDANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q7MGK4|RSMB_VIBVY Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain YJ016) GN=rsmB PE=3 SV=1
Length = 426
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 30/413 (7%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ +I G +R+ L+ + L +K + + ++ +G Y++ + +P +
Sbjct: 35 RDHALLQEICYGALRYLPRLESIAGKLM--DKPLKGKQRVFHHLILVGLYQLGHMRIPAH 92
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V A+ P L+N +LR ++ +L D A Y H
Sbjct: 93 AAVGETVEGAQALKGPRLRGLINAVLRNYQ--REQQAL--------DEFSVSHNAGKYVH 142
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH-ELS 288
P W+++ ++ + NN P + LR N D L LLK + + +
Sbjct: 143 PSWLLKILQDAYPEQWQTIVEANNNKAPMW-LRVNH----AHHDRDEYLQLLKNANIDST 197
Query: 289 LHLDEFIRVKTGLQ-NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
LH + +K +V ++G +VQD +A L + P+ G+ I+DCCAAPGGK
Sbjct: 198 LHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQLSFNYLQPKDGELILDCCAAPGGK 257
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 406
T ++ +S + +V A+D ++ RL+ + E L ++N + I D R + D
Sbjct: 258 TAHILERVSAREVV-ALDCDEQRLKRVTEN--LKRLNLQAKVICGDARNPEQWWQGEQFD 314
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466
++LLDAPCS GV+ + D++W RR ED+ L LQ E+ DA +KPGG LVY+TCSI
Sbjct: 315 RILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCSI 374
Query: 467 DPEENEERVEAFLLRHPEFSI------DPADGLVPSDFVTKHGFFFSDPIKHS 513
P EN E+V+AFL R P + +P ++P + GF+++ +K +
Sbjct: 375 TPMENVEQVKAFLARTPAAQLVGSERENPGRQILPGE-EDMDGFYYAVLVKQA 426
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 206/418 (49%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + + A+ A
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ-----------RQQEELLAEFNASD 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 141 ACYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + +R++T + G +EG VQD SA +A + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVRLETPAPVHVLPGF-EEGWVTVQDASAQGCMAWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L+
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLI 371
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 207/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5BGV5|RSMB_SALPK Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 207/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q5PIT6|RSMB_SALPA Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmB PE=3
SV=1
Length = 429
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 207/415 (49%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5FJI4|RSMB_SALDC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
dublin (strain CT_02021853) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 208/415 (50%), Gaps = 36/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + +++ NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D C+AP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCSAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIVELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5XNC2|RSMB_KLEP3 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae (strain 342) GN=rsmB PE=3 SV=1
Length = 431
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 204/415 (49%), Gaps = 28/415 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--ARPMTGKQRTVHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L + E +R
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEALLVEFAEHENR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
Y HP W+++R + Q+ +++ NN P LR N R +R + + L +
Sbjct: 143 --YLHPKWLLKRLQQAWPQQWQ-EIVDANNQRPPMWLRVN-RNHHSRDEWLALLKEAGLE 198
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ +R+ T G EG VQD SA + + P+ G+ I+D CAAP
Sbjct: 199 GFTHPDYPDAVRLATPAPVHALPGF-AEGWVTVQDASAQGCMRYLLPENGERILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
GGKT ++ ++ Q V A+DI++ RL R+ + +L V + + N
Sbjct: 258 GGKTTHILE-VAPQAQVMAVDIDEQRLSRVYDNLKRLGMKAEVKQGDGRFPEQWCGNE-- 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L++ +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNSTWEHLKPGGTLVYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
CSI PEEN +++ AFL R P+ + P +P GFF++ IK
Sbjct: 375 CSILPEENSQQISAFLARTPDAELHATGTPASPGQQNLPGP-EEGDGFFYAKLIK 428
>sp|B2VK95|RSMB_ERWT9 Ribosomal RNA small subunit methyltransferase B OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmB PE=3
SV=1
Length = 429
Score = 159 bits (401), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 27/421 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ G +R L+ +I L + + + + ++ +G Y+++
Sbjct: 34 KSVGDKDAALLQELCYGVLRTLPQLEWVIGRLM--SRPMTGKQRAVHFLIMVGLYQLMFT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A RP L+NG+LR+ +D + ND Q
Sbjct: 92 RIPAHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQDELMQQM-----NDGDQQ---- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
Y HP W++ R K + +++ NN P LR N + A L + K
Sbjct: 143 --YLHPKWLLER-LKRAWPAQWKQIVDANNQRPPMWLRVNRQHHSRDAWLTLLEESGKQA 199
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H D +R+++ V Q +G VQD SA VA++ P+ G+ I+D CAAP
Sbjct: 200 FAHPQHGDA-LRLESPC-AVGQLPGFDQGWITVQDVSAQGCVALLAPRDGEQILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ + Q V A+D++ RL ++E L ++ D RT A
Sbjct: 258 GGKTTHILEA-APQAKVMAVDVDAQRLARVSEN--LQRLTMQAEVKQGDGRTPAAWCGDT 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ ++LDA +KPGG L+Y+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKPGGTLLYAT 374
Query: 464 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 523
CS+ PEEN ++ FL RH + + L+ + +T+ G P DG + A+LV
Sbjct: 375 CSVLPEENHVQIGQFLQRHADAT------LIETGDLTQPGIQVF-PQADGGDGFYYAKLV 427
Query: 524 R 524
+
Sbjct: 428 K 428
>sp|Q8DDE5|RSMB_VIBVU Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain CMCP6) GN=rsmB PE=3 SV=1
Length = 426
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 203/413 (49%), Gaps = 30/413 (7%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ +I G +R+ L+ + L +K + + ++ +G Y++ + +P +
Sbjct: 35 RDHALLQEICYGALRYLPRLESIAGKLM--DKPLKGKQRVFHHLILVGLYQLGHMRIPAH 92
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V A+ P L+N +LR ++ +L + N A Y H
Sbjct: 93 AAVGETVEGAQALKGPRLRGLINAVLRNYQ--REQQALDEFSVSHN--------AGKYVH 142
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH-ELS 288
P W+++ ++ + NN P + LR N D L LLK + + +
Sbjct: 143 PSWLLKILQDAYPEQWQTIVEANNNKAPMW-LRVNH----AHHDRDEYLQLLKNANIDST 197
Query: 289 LHLDEFIRVKTGLQ-NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
LH + +K +V ++G +VQD +A L + P+ G+ I+DCCAAPGGK
Sbjct: 198 LHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQLSFNYLQPKDGELILDCCAAPGGK 257
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 406
T ++ +S + +V A+D ++ RL+ + E L ++N + I D R + D
Sbjct: 258 TAHILERVSAREVV-ALDCDEQRLKRVTEN--LKRLNLQAKVICGDARNPEQWWQGEQFD 314
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466
++LLDAPCS GV+ + D++W RR ED+ L LQ E+ DA +KPGG LVY+TCSI
Sbjct: 315 RILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCSI 374
Query: 467 DPEENEERVEAFLLRHPEFSI------DPADGLVPSDFVTKHGFFFSDPIKHS 513
P EN E+V+AFL R + +P ++P + GF+++ +K +
Sbjct: 375 TPMENVEQVKAFLARTSAAQLVGSERENPGRQIIPGE-EDMDGFYYAVLVKQA 426
>sp|B7NLK8|RSMB_ECO7I Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 207/418 (49%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LV
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLV 371
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 207/418 (49%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L L K +D AR
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQ--RQQEEL-LAKFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + +R++T G ++G VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LV
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLV 371
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 204/424 (48%), Gaps = 46/424 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNTSDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL +++ K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVHDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 454
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 365
Query: 455 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFS 507
GG LVY+TCS+ PEEN +++AFL R + + P +P GFF++
Sbjct: 366 SGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYA 424
Query: 508 DPIK 511
IK
Sbjct: 425 KLIK 428
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/430 (29%), Positives = 204/430 (47%), Gaps = 45/430 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRRQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I NN P LR N + L +
Sbjct: 135 EFNTRDARYLHPSWLLKRLQKAYPEQWQSIAEA--NNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRIYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 454
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 365
Query: 455 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 514
GG LVY+TCS+ PEEN +++AFL R AD + + + P
Sbjct: 366 SGGTLVYATCSVLPEENSLQIKAFLQRT-------ADAELCETGTPEQPGKQNQPGAEEG 418
Query: 515 DGAFAARLVR 524
DG F A+L++
Sbjct: 419 DGFFYAKLIK 428
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 207/418 (49%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LV
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLV 371
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 372 YATCSMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 207/418 (49%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LV
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLV 371
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 372 YATCSMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 207/418 (49%), Gaps = 34/418 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LV
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLV 371
Query: 461 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 511
Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 372 YATCSMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,610,298
Number of Sequences: 539616
Number of extensions: 8255886
Number of successful extensions: 22679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 21778
Number of HSP's gapped (non-prelim): 712
length of query: 526
length of database: 191,569,459
effective HSP length: 122
effective length of query: 404
effective length of database: 125,736,307
effective search space: 50797468028
effective search space used: 50797468028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)