Query 009769
Match_columns 526
No_of_seqs 469 out of 3496
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 17:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14901 16S rRNA methyltransf 100.0 4.7E-83 1E-87 680.5 47.5 426 60-525 3-433 (434)
2 PRK14903 16S rRNA methyltransf 100.0 1.4E-80 3E-85 658.7 48.2 422 59-525 4-430 (431)
3 TIGR00563 rsmB ribosomal RNA s 100.0 1.1E-79 2.5E-84 653.4 49.1 424 61-525 1-426 (426)
4 PRK14902 16S rRNA methyltransf 100.0 1.9E-79 4E-84 655.3 50.1 437 59-525 4-443 (444)
5 PRK14904 16S rRNA methyltransf 100.0 2.4E-79 5.2E-84 654.0 50.2 436 59-525 3-443 (445)
6 PRK10901 16S rRNA methyltransf 100.0 4.3E-79 9.3E-84 648.8 49.1 424 59-525 3-427 (427)
7 COG0144 Sun tRNA and rRNA cyto 100.0 7.8E-64 1.7E-68 517.4 35.5 346 166-525 1-354 (355)
8 PRK11933 yebU rRNA (cytosine-C 100.0 1.9E-59 4.2E-64 497.1 33.7 296 228-525 3-307 (470)
9 KOG1122 tRNA and rRNA cytosine 100.0 2.5E-56 5.4E-61 448.8 21.8 420 83-525 11-441 (460)
10 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 5.6E-55 1.2E-59 438.7 21.9 273 249-523 1-283 (283)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 7.8E-50 1.7E-54 398.8 29.8 260 261-524 1-264 (264)
12 KOG2360 Proliferation-associat 100.0 9.9E-31 2.1E-35 261.5 17.5 278 244-525 117-413 (413)
13 KOG2198 tRNA cytosine-5-methyl 100.0 1E-29 2.2E-34 254.7 14.6 185 310-495 132-329 (375)
14 COG0781 NusB Transcription ter 99.9 1.4E-27 3.1E-32 215.6 13.4 134 57-203 10-146 (151)
15 PF01029 NusB: NusB family; I 99.9 2.1E-27 4.5E-32 213.3 9.6 130 59-200 2-134 (134)
16 cd00619 Terminator_NusB Transc 99.9 9.4E-27 2E-31 207.9 13.4 127 58-201 2-129 (130)
17 PRK00202 nusB transcription an 99.9 1.6E-26 3.6E-31 208.2 13.5 129 58-203 4-133 (137)
18 TIGR01951 nusB transcription a 99.9 3E-26 6.4E-31 204.5 13.5 126 58-200 2-128 (129)
19 cd00620 Methyltransferase_Sun 99.9 7.1E-26 1.5E-30 201.1 13.9 123 60-201 3-125 (126)
20 cd00447 NusB_Sun RNA binding d 99.9 6.6E-23 1.4E-27 182.8 13.8 124 60-201 2-128 (129)
21 PRK09634 nusB transcription an 99.9 3.7E-21 7.9E-26 182.0 11.8 93 109-202 110-202 (207)
22 PRK15128 23S rRNA m(5)C1962 me 99.7 1.7E-16 3.6E-21 166.7 18.6 164 308-489 198-368 (396)
23 COG1092 Predicted SAM-dependen 99.7 9.7E-17 2.1E-21 166.4 15.3 164 308-489 195-365 (393)
24 PF10672 Methyltrans_SAM: S-ad 99.7 4E-16 8.8E-21 156.0 11.0 142 308-470 101-245 (286)
25 TIGR03533 L3_gln_methyl protei 99.6 1.4E-14 3.1E-19 146.3 18.4 128 332-464 120-252 (284)
26 PRK11783 rlmL 23S rRNA m(2)G24 99.6 7.1E-15 1.5E-19 165.5 15.4 146 309-470 517-663 (702)
27 COG2242 CobL Precorrin-6B meth 99.6 2.1E-14 4.5E-19 133.0 15.5 142 317-490 18-159 (187)
28 PF12847 Methyltransf_18: Meth 99.6 5.7E-15 1.2E-19 127.5 10.7 112 333-464 1-112 (112)
29 PRK09328 N5-glutamine S-adenos 99.6 9.3E-14 2E-18 139.5 19.6 231 231-481 9-252 (275)
30 PF13659 Methyltransf_26: Meth 99.6 7.4E-15 1.6E-19 127.9 9.3 116 334-465 1-117 (117)
31 COG4123 Predicted O-methyltran 99.6 2E-14 4.4E-19 139.9 13.0 153 321-482 32-185 (248)
32 PF05175 MTS: Methyltransferas 99.6 7.9E-15 1.7E-19 137.0 9.6 126 319-465 17-142 (170)
33 TIGR03704 PrmC_rel_meth putati 99.6 7.8E-14 1.7E-18 138.4 16.4 140 334-482 87-231 (251)
34 PRK00377 cbiT cobalt-precorrin 99.5 2.2E-13 4.7E-18 130.5 16.1 136 319-482 26-161 (198)
35 TIGR01177 conserved hypothetic 99.5 9.6E-14 2.1E-18 143.3 14.4 128 322-467 171-298 (329)
36 PRK14967 putative methyltransf 99.5 3.4E-13 7.4E-18 131.6 16.8 145 312-466 13-162 (223)
37 COG2519 GCD14 tRNA(1-methylade 99.5 4.8E-13 1E-17 129.3 16.5 126 310-464 71-197 (256)
38 TIGR00537 hemK_rel_arch HemK-r 99.5 4.1E-13 8.9E-18 126.4 15.0 158 319-490 5-163 (179)
39 COG2226 UbiE Methylase involve 99.5 2E-13 4.2E-18 133.0 12.7 115 324-463 42-156 (238)
40 PRK11805 N5-glutamine S-adenos 99.5 3.9E-13 8.5E-18 137.1 15.2 123 335-462 135-262 (307)
41 TIGR00080 pimt protein-L-isoas 99.5 3.9E-13 8.4E-18 130.4 14.1 121 313-463 57-177 (215)
42 PF08704 GCD14: tRNA methyltra 99.5 1.7E-13 3.6E-18 134.6 11.6 124 314-464 21-148 (247)
43 TIGR00536 hemK_fam HemK family 99.5 1.1E-12 2.4E-17 132.6 17.3 129 334-465 115-246 (284)
44 PRK03522 rumB 23S rRNA methylu 99.5 3.9E-13 8.4E-18 138.0 13.9 147 328-524 168-314 (315)
45 PRK04266 fibrillarin; Provisio 99.5 2.7E-12 5.9E-17 125.2 18.7 114 321-462 58-175 (226)
46 PRK07402 precorrin-6B methylas 99.5 1.9E-12 4.1E-17 123.7 16.2 127 312-466 19-145 (196)
47 PRK13944 protein-L-isoaspartat 99.5 1.2E-12 2.5E-17 126.1 14.6 116 318-462 57-172 (205)
48 PF13847 Methyltransf_31: Meth 99.4 8.4E-13 1.8E-17 120.8 12.2 111 332-465 2-112 (152)
49 TIGR02469 CbiT precorrin-6Y C5 99.4 2.7E-12 5.9E-17 112.4 14.6 112 325-463 11-122 (124)
50 PRK14966 unknown domain/N5-glu 99.4 3.5E-12 7.5E-17 133.1 17.4 164 312-482 229-396 (423)
51 PF01209 Ubie_methyltran: ubiE 99.4 2.4E-13 5.3E-18 133.2 7.9 118 324-465 38-155 (233)
52 PRK13942 protein-L-isoaspartat 99.4 1.9E-12 4.1E-17 125.3 14.0 120 313-462 56-175 (212)
53 PRK08287 cobalt-precorrin-6Y C 99.4 4.1E-12 8.9E-17 120.4 16.0 135 316-483 14-148 (187)
54 COG2890 HemK Methylase of poly 99.4 3.2E-12 7E-17 128.6 15.6 167 311-487 86-258 (280)
55 PLN02476 O-methyltransferase 99.4 2.8E-12 6.1E-17 127.8 14.7 127 316-467 101-232 (278)
56 PLN02781 Probable caffeoyl-CoA 99.4 1.7E-12 3.7E-17 127.5 12.5 122 320-466 55-181 (234)
57 PRK09489 rsmC 16S ribosomal RN 99.4 3.5E-12 7.6E-17 131.8 14.0 129 319-470 182-310 (342)
58 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.9E-12 8.5E-17 136.5 14.6 150 326-524 290-442 (443)
59 PRK14968 putative methyltransf 99.4 4.8E-12 1E-16 119.4 13.6 157 322-488 12-169 (188)
60 COG2813 RsmC 16S RNA G1207 met 99.4 4.8E-12 1E-16 125.8 14.0 128 319-468 144-271 (300)
61 PRK00107 gidB 16S rRNA methylt 99.4 6.3E-12 1.4E-16 119.0 14.1 108 332-469 44-151 (187)
62 TIGR03534 RF_mod_PrmC protein- 99.4 9E-12 2E-16 123.2 15.8 142 333-482 87-232 (251)
63 PF01135 PCMT: Protein-L-isoas 99.4 1.5E-12 3.1E-17 125.4 9.6 120 312-461 51-170 (209)
64 KOG1540 Ubiquinone biosynthesi 99.4 3.5E-12 7.5E-17 122.4 11.8 139 325-490 92-237 (296)
65 PRK15001 SAM-dependent 23S rib 99.4 7.9E-12 1.7E-16 130.2 15.2 127 319-465 214-342 (378)
66 COG1041 Predicted DNA modifica 99.4 4.5E-12 9.8E-17 128.2 12.9 129 318-464 182-311 (347)
67 TIGR02085 meth_trns_rumB 23S r 99.4 8.4E-12 1.8E-16 130.9 15.2 83 330-416 230-312 (374)
68 PF01170 UPF0020: Putative RNA 99.4 1.2E-11 2.6E-16 116.5 14.6 131 317-464 12-150 (179)
69 TIGR00091 tRNA (guanine-N(7)-) 99.4 6.5E-12 1.4E-16 119.9 12.9 139 333-490 16-156 (194)
70 PF05958 tRNA_U5-meth_tr: tRNA 99.4 4.4E-12 9.4E-17 131.9 12.5 150 324-525 188-352 (352)
71 TIGR00138 gidB 16S rRNA methyl 99.4 9.2E-12 2E-16 117.5 13.4 125 333-491 42-168 (181)
72 PRK01544 bifunctional N5-gluta 99.4 1.4E-11 3.1E-16 133.8 16.7 139 333-482 138-284 (506)
73 COG4122 Predicted O-methyltran 99.4 7.8E-12 1.7E-16 120.1 12.7 131 312-467 38-170 (219)
74 PRK00312 pcm protein-L-isoaspa 99.4 8.8E-12 1.9E-16 120.6 13.3 119 313-464 58-176 (212)
75 TIGR02752 MenG_heptapren 2-hep 99.4 2.7E-11 5.8E-16 118.5 16.8 117 323-463 35-151 (231)
76 TIGR00479 rumA 23S rRNA (uraci 99.3 1.2E-11 2.5E-16 132.5 15.4 110 326-465 285-397 (431)
77 COG2518 Pcm Protein-L-isoaspar 99.3 9.1E-12 2E-16 118.0 12.2 120 312-464 51-170 (209)
78 PRK00121 trmB tRNA (guanine-N( 99.3 6.1E-12 1.3E-16 120.9 10.9 116 333-464 40-157 (202)
79 COG2265 TrmA SAM-dependent met 99.3 1.5E-11 3.2E-16 130.3 14.5 113 323-465 283-397 (432)
80 PLN02233 ubiquinone biosynthes 99.3 3.7E-11 8E-16 120.1 16.4 120 324-466 64-185 (261)
81 PTZ00146 fibrillarin; Provisio 99.3 3.1E-11 6.8E-16 120.6 15.7 115 321-462 114-236 (293)
82 PRK05031 tRNA (uracil-5-)-meth 99.3 1.9E-11 4.1E-16 127.6 14.9 140 334-524 207-361 (362)
83 COG2230 Cfa Cyclopropane fatty 99.3 1.2E-11 2.6E-16 122.6 12.5 143 318-487 57-201 (283)
84 PF02353 CMAS: Mycolic acid cy 99.3 7.8E-12 1.7E-16 125.3 10.6 124 318-467 47-170 (273)
85 COG2263 Predicted RNA methylas 99.3 3.2E-11 6.9E-16 111.6 13.6 120 329-483 41-160 (198)
86 KOG2904 Predicted methyltransf 99.3 5.3E-11 1.1E-15 115.3 15.1 170 311-483 120-303 (328)
87 PRK14121 tRNA (guanine-N(7)-)- 99.3 5.4E-11 1.2E-15 123.6 15.5 120 329-466 118-238 (390)
88 PF02475 Met_10: Met-10+ like- 99.3 7.6E-12 1.7E-16 119.3 8.5 102 331-461 99-200 (200)
89 PRK10909 rsmD 16S rRNA m(2)G96 99.3 3.5E-11 7.5E-16 115.0 12.3 80 332-414 52-131 (199)
90 PLN02244 tocopherol O-methyltr 99.3 5.5E-11 1.2E-15 123.3 14.3 109 332-465 117-225 (340)
91 PLN02672 methionine S-methyltr 99.3 4.2E-11 9.1E-16 137.9 14.7 171 312-488 93-299 (1082)
92 TIGR02143 trmA_only tRNA (urac 99.3 7.5E-11 1.6E-15 122.7 15.2 79 335-417 199-292 (353)
93 PF01596 Methyltransf_3: O-met 99.3 8.7E-12 1.9E-16 119.6 7.3 121 320-465 32-157 (205)
94 PRK11036 putative S-adenosyl-L 99.3 5E-11 1.1E-15 118.7 12.9 109 332-465 43-151 (255)
95 PRK11188 rrmJ 23S rRNA methylt 99.3 8.5E-11 1.8E-15 113.5 14.0 109 331-463 49-165 (209)
96 TIGR00406 prmA ribosomal prote 99.3 8.7E-11 1.9E-15 119.0 14.7 135 320-489 144-280 (288)
97 PF03602 Cons_hypoth95: Conser 99.2 1.9E-11 4E-16 115.5 8.7 107 333-463 42-153 (183)
98 PRK11207 tellurite resistance 99.2 1.2E-10 2.6E-15 111.4 14.0 115 322-462 19-133 (197)
99 PRK11873 arsM arsenite S-adeno 99.2 1.6E-10 3.4E-15 116.1 15.3 112 329-464 73-184 (272)
100 PF09445 Methyltransf_15: RNA 99.2 5.5E-11 1.2E-15 109.3 10.6 85 335-422 1-87 (163)
101 TIGR00438 rrmJ cell division p 99.2 2.2E-10 4.7E-15 108.7 14.6 113 328-463 27-146 (188)
102 TIGR00477 tehB tellurite resis 99.2 1.1E-10 2.5E-15 111.4 12.7 114 323-463 20-133 (195)
103 COG2264 PrmA Ribosomal protein 99.2 2.1E-10 4.4E-15 114.9 14.7 139 319-490 146-286 (300)
104 COG0742 N6-adenine-specific me 99.2 1.1E-10 2.4E-15 109.0 11.7 108 332-461 42-152 (187)
105 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.5E-10 3.1E-15 114.8 12.9 112 331-465 54-166 (247)
106 PRK00517 prmA ribosomal protei 99.2 4.8E-10 1E-14 111.4 16.4 119 331-489 117-235 (250)
107 PRK13943 protein-L-isoaspartat 99.2 2.1E-10 4.5E-15 117.4 13.9 111 323-463 70-180 (322)
108 COG2227 UbiG 2-polyprenyl-3-me 99.2 6.7E-11 1.5E-15 113.7 8.6 109 332-468 58-166 (243)
109 PLN02589 caffeoyl-CoA O-methyl 99.2 1.8E-10 4E-15 113.4 12.0 123 319-466 65-193 (247)
110 KOG1271 Methyltransferases [Ge 99.2 1.5E-10 3.2E-15 105.9 10.0 120 335-475 69-193 (227)
111 TIGR00095 RNA methyltransferas 99.2 2.4E-10 5.2E-15 108.6 11.8 81 333-415 49-132 (189)
112 PHA03411 putative methyltransf 99.2 5.4E-10 1.2E-14 110.6 14.4 148 330-489 61-211 (279)
113 PLN02396 hexaprenyldihydroxybe 99.2 2E-10 4.4E-15 117.6 11.8 109 331-465 129-237 (322)
114 PRK04338 N(2),N(2)-dimethylgua 99.2 2.3E-10 4.9E-15 120.0 12.4 125 309-462 32-157 (382)
115 COG2520 Predicted methyltransf 99.2 2.4E-10 5.2E-15 116.6 12.1 106 331-465 186-291 (341)
116 PHA03412 putative methyltransf 99.1 1.8E-10 3.8E-15 111.6 10.0 132 333-482 49-193 (241)
117 TIGR00452 methyltransferase, p 99.1 1.5E-09 3.2E-14 110.8 17.0 114 328-467 116-229 (314)
118 PRK04457 spermidine synthase; 99.1 1.1E-09 2.4E-14 109.3 15.9 117 331-466 64-180 (262)
119 PRK01683 trans-aconitate 2-met 99.1 1.1E-09 2.4E-14 109.0 15.5 116 317-463 15-130 (258)
120 TIGR00740 methyltransferase, p 99.1 9.8E-10 2.1E-14 108.3 14.2 110 332-464 52-162 (239)
121 PF02384 N6_Mtase: N-6 DNA Met 99.1 8.5E-11 1.8E-15 120.4 6.9 166 312-482 25-205 (311)
122 PF06325 PrmA: Ribosomal prote 99.1 2.3E-10 5.1E-15 115.4 9.6 135 319-490 145-281 (295)
123 PRK14103 trans-aconitate 2-met 99.1 3.7E-10 7.9E-15 112.5 10.9 105 325-462 21-125 (255)
124 TIGR00308 TRM1 tRNA(guanine-26 99.1 4.3E-10 9.4E-15 117.3 11.5 103 335-465 46-148 (374)
125 PRK10258 biotin biosynthesis p 99.1 3.5E-10 7.5E-15 112.3 9.9 117 316-464 25-141 (251)
126 PLN03075 nicotianamine synthas 99.1 1.1E-09 2.4E-14 110.0 13.4 110 333-464 123-234 (296)
127 PTZ00098 phosphoethanolamine N 99.1 1E-09 2.2E-14 109.8 12.7 129 310-464 28-157 (263)
128 KOG2915 tRNA(1-methyladenosine 99.1 1.7E-09 3.6E-14 105.0 13.5 127 313-469 85-212 (314)
129 PRK08317 hypothetical protein; 99.1 1.9E-09 4.1E-14 105.1 14.3 115 326-465 12-126 (241)
130 PRK15068 tRNA mo(5)U34 methylt 99.0 2.2E-09 4.9E-14 110.3 13.7 114 325-464 114-227 (322)
131 PRK11705 cyclopropane fatty ac 99.0 2.1E-09 4.6E-14 113.0 13.6 115 321-465 155-269 (383)
132 PF08241 Methyltransf_11: Meth 99.0 1.7E-10 3.7E-15 95.6 4.3 95 338-461 1-95 (95)
133 PRK00216 ubiE ubiquinone/menaq 99.0 6.2E-09 1.4E-13 101.8 16.1 119 324-465 42-160 (239)
134 PLN02336 phosphoethanolamine N 99.0 3.2E-09 6.8E-14 115.2 15.3 116 323-465 256-371 (475)
135 PF13649 Methyltransf_25: Meth 99.0 6.2E-10 1.3E-14 94.6 7.7 99 337-457 1-101 (101)
136 KOG1270 Methyltransferases [Co 99.0 8.2E-10 1.8E-14 106.9 9.1 103 333-464 89-196 (282)
137 smart00828 PKS_MT Methyltransf 99.0 2E-09 4.4E-14 104.7 12.0 105 335-464 1-105 (224)
138 TIGR02716 C20_methyl_CrtF C-20 99.0 5E-09 1.1E-13 107.1 15.1 124 322-470 138-261 (306)
139 PRK12335 tellurite resistance 99.0 2.8E-09 6.2E-14 108.0 13.2 103 333-462 120-222 (287)
140 PRK00811 spermidine synthase; 99.0 5.6E-09 1.2E-13 105.5 14.1 114 333-465 76-193 (283)
141 TIGR02021 BchM-ChlM magnesium 99.0 2.8E-09 6E-14 103.6 11.2 73 331-410 53-125 (219)
142 PRK06922 hypothetical protein; 99.0 6.2E-09 1.4E-13 113.7 14.7 126 327-465 412-539 (677)
143 PF02390 Methyltransf_4: Putat 99.0 2.1E-09 4.6E-14 102.6 9.9 136 335-489 19-157 (195)
144 PF03848 TehB: Tellurite resis 99.0 5.2E-09 1.1E-13 99.0 12.1 117 319-463 17-133 (192)
145 cd02440 AdoMet_MTases S-adenos 99.0 5E-09 1.1E-13 86.9 10.8 103 336-462 1-103 (107)
146 COG0220 Predicted S-adenosylme 98.9 2.9E-09 6.4E-14 103.5 9.6 114 335-464 50-165 (227)
147 COG2521 Predicted archaeal met 98.9 9.7E-10 2.1E-14 104.3 6.0 116 327-463 128-245 (287)
148 COG0116 Predicted N6-adenine-s 98.9 9.4E-09 2E-13 105.7 13.5 127 322-463 180-344 (381)
149 KOG1663 O-methyltransferase [S 98.9 7E-09 1.5E-13 98.9 11.4 124 317-465 57-185 (237)
150 TIGR00417 speE spermidine synt 98.9 2.3E-08 5.1E-13 100.4 15.7 114 334-466 73-189 (270)
151 smart00650 rADc Ribosomal RNA 98.9 1E-08 2.3E-13 95.5 12.1 84 325-415 5-88 (169)
152 PRK05134 bifunctional 3-demeth 98.9 1.4E-08 2.9E-13 99.6 13.1 117 323-466 38-154 (233)
153 PRK03612 spermidine synthase; 98.9 9.2E-09 2E-13 112.5 12.5 139 332-489 296-441 (521)
154 PF05401 NodS: Nodulation prot 98.9 3E-09 6.6E-14 99.7 7.5 141 314-482 24-171 (201)
155 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 3.7E-08 8E-13 95.2 14.9 116 325-466 31-146 (223)
156 TIGR03840 TMPT_Se_Te thiopurin 98.9 2.4E-08 5.2E-13 96.7 13.2 109 332-466 33-155 (213)
157 PRK01581 speE spermidine synth 98.9 5.9E-08 1.3E-12 99.8 16.0 114 334-465 151-270 (374)
158 TIGR03438 probable methyltrans 98.9 2.5E-08 5.3E-13 101.8 13.2 115 332-465 62-179 (301)
159 COG0293 FtsJ 23S rRNA methylas 98.9 2.3E-08 4.9E-13 94.9 11.7 126 331-482 43-175 (205)
160 PRK11727 23S rRNA mA1618 methy 98.8 2.4E-08 5.3E-13 101.9 12.6 84 333-417 114-202 (321)
161 PLN02336 phosphoethanolamine N 98.8 3E-08 6.4E-13 107.6 13.0 120 320-465 24-144 (475)
162 COG4106 Tam Trans-aconitate me 98.8 2.7E-08 5.9E-13 93.7 10.8 113 319-463 17-129 (257)
163 PF08003 Methyltransf_9: Prote 98.8 3E-07 6.6E-12 91.8 18.9 198 227-466 15-222 (315)
164 TIGR01983 UbiG ubiquinone bios 98.8 3.3E-08 7.2E-13 96.1 12.0 107 333-465 45-151 (224)
165 PF08242 Methyltransf_12: Meth 98.8 7.6E-10 1.7E-14 93.4 0.3 98 338-459 1-99 (99)
166 TIGR02072 BioC biotin biosynth 98.8 2.2E-08 4.7E-13 97.8 10.4 118 317-463 15-135 (240)
167 PRK00050 16S rRNA m(4)C1402 me 98.8 1.3E-08 2.8E-13 102.7 8.8 90 325-417 11-103 (296)
168 PTZ00338 dimethyladenosine tra 98.8 2.3E-08 5E-13 101.4 10.6 94 317-416 20-113 (294)
169 PF01269 Fibrillarin: Fibrilla 98.8 2.5E-07 5.4E-12 88.4 16.7 141 321-489 55-209 (229)
170 KOG4589 Cell division protein 98.8 5.9E-08 1.3E-12 89.3 11.5 126 331-482 67-200 (232)
171 PLN02490 MPBQ/MSBQ methyltrans 98.8 3.7E-08 7.9E-13 101.5 11.4 103 332-462 112-214 (340)
172 PLN02366 spermidine synthase 98.8 7E-08 1.5E-12 98.4 13.3 115 332-465 90-208 (308)
173 KOG2187 tRNA uracil-5-methyltr 98.8 1.3E-08 2.7E-13 107.1 7.9 116 325-469 375-495 (534)
174 PRK11088 rrmA 23S rRNA methylt 98.8 4.8E-08 1E-12 98.2 10.9 109 319-464 72-182 (272)
175 PRK13255 thiopurine S-methyltr 98.8 9.8E-08 2.1E-12 92.7 12.7 109 330-464 34-156 (218)
176 TIGR03587 Pse_Me-ase pseudamin 98.7 2E-07 4.3E-12 89.8 13.4 128 331-489 41-180 (204)
177 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2.7E-07 5.9E-12 104.5 16.4 122 327-463 183-347 (702)
178 smart00138 MeTrc Methyltransfe 98.7 1.1E-07 2.3E-12 95.2 11.2 112 332-464 98-243 (264)
179 KOG2730 Methylase [General fun 98.7 1.6E-08 3.5E-13 95.3 4.6 87 333-422 94-183 (263)
180 PLN02823 spermine synthase 98.7 5.3E-07 1.1E-11 93.0 16.2 134 334-485 104-246 (336)
181 PRK01544 bifunctional N5-gluta 98.7 1.9E-07 4.1E-12 101.7 13.5 138 333-489 347-485 (506)
182 KOG3191 Predicted N6-DNA-methy 98.7 2.2E-07 4.8E-12 85.4 11.5 138 334-482 44-184 (209)
183 KOG2671 Putative RNA methylase 98.7 1.7E-08 3.7E-13 100.8 4.4 169 313-488 188-375 (421)
184 PRK14896 ksgA 16S ribosomal RN 98.7 8.8E-08 1.9E-12 95.6 9.6 90 317-415 13-102 (258)
185 PRK10742 putative methyltransf 98.7 9.7E-08 2.1E-12 93.2 9.5 92 321-415 74-175 (250)
186 COG0286 HsdM Type I restrictio 98.7 9.6E-08 2.1E-12 103.6 10.6 170 312-481 165-346 (489)
187 TIGR02987 met_A_Alw26 type II 98.7 2.1E-07 4.5E-12 102.3 13.3 170 312-482 3-216 (524)
188 PRK00274 ksgA 16S ribosomal RN 98.7 8.1E-08 1.7E-12 96.6 9.1 91 317-415 26-116 (272)
189 KOG1541 Predicted protein carb 98.6 1.9E-07 4.2E-12 88.2 10.8 145 312-481 27-174 (270)
190 PF01728 FtsJ: FtsJ-like methy 98.6 3.3E-08 7.1E-13 93.2 5.6 107 333-464 23-140 (181)
191 KOG1596 Fibrillarin and relate 98.6 1.8E-07 3.9E-12 89.3 9.3 141 321-489 138-290 (317)
192 PRK07580 Mg-protoporphyrin IX 98.6 4E-07 8.7E-12 88.8 12.2 74 331-411 61-134 (230)
193 PRK06202 hypothetical protein; 98.6 5E-07 1.1E-11 88.6 12.4 78 329-411 56-136 (232)
194 KOG3420 Predicted RNA methylas 98.6 8.5E-08 1.8E-12 84.8 6.0 78 332-414 47-124 (185)
195 PF13489 Methyltransf_23: Meth 98.6 2.5E-07 5.4E-12 84.5 8.9 109 321-466 9-118 (161)
196 KOG2899 Predicted methyltransf 98.5 1.1E-06 2.4E-11 84.3 11.5 124 333-476 58-222 (288)
197 KOG1661 Protein-L-isoaspartate 98.5 7.2E-07 1.6E-11 83.9 9.1 106 327-461 74-191 (237)
198 PRK05785 hypothetical protein; 98.4 6.9E-07 1.5E-11 87.4 9.2 91 333-457 51-141 (226)
199 COG4976 Predicted methyltransf 98.4 3.9E-07 8.5E-12 86.7 6.1 129 331-491 123-264 (287)
200 PLN02585 magnesium protoporphy 98.4 1.9E-06 4E-11 88.3 11.6 71 333-410 144-218 (315)
201 TIGR00755 ksgA dimethyladenosi 98.4 2.3E-06 4.9E-11 85.2 11.7 86 320-414 16-104 (253)
202 KOG1499 Protein arginine N-met 98.4 1.6E-06 3.4E-11 87.9 10.1 112 333-467 60-171 (346)
203 PF01564 Spermine_synth: Sperm 98.3 5.2E-06 1.1E-10 82.2 12.8 113 333-464 76-192 (246)
204 COG0275 Predicted S-adenosylme 98.3 1.9E-05 4.1E-10 78.7 16.2 90 325-416 15-108 (314)
205 PF12147 Methyltransf_20: Puta 98.3 1.3E-05 2.7E-10 79.6 14.7 129 334-483 136-267 (311)
206 PF07021 MetW: Methionine bios 98.3 5.2E-06 1.1E-10 77.9 11.5 75 324-410 6-81 (193)
207 PF05185 PRMT5: PRMT5 arginine 98.3 5.9E-07 1.3E-11 96.1 5.9 110 334-465 187-299 (448)
208 PF02005 TRM: N2,N2-dimethylgu 98.3 8.8E-07 1.9E-11 92.7 6.7 105 334-465 50-155 (377)
209 COG1889 NOP1 Fibrillarin-like 98.3 1.1E-05 2.3E-10 75.7 12.6 140 321-489 58-211 (231)
210 COG3963 Phospholipid N-methylt 98.3 6.3E-06 1.4E-10 74.9 10.1 119 321-465 36-158 (194)
211 KOG4300 Predicted methyltransf 98.3 2.1E-06 4.5E-11 80.6 7.2 105 334-463 77-182 (252)
212 PRK13256 thiopurine S-methyltr 98.3 7.9E-06 1.7E-10 79.5 11.3 111 331-465 41-165 (226)
213 COG0030 KsgA Dimethyladenosine 98.2 5.4E-06 1.2E-10 81.8 9.7 88 322-415 19-106 (259)
214 PF01861 DUF43: Protein of unk 98.2 1.1E-05 2.3E-10 78.3 10.6 128 333-488 44-174 (243)
215 PF13578 Methyltransf_24: Meth 98.2 4E-07 8.6E-12 77.9 0.7 103 338-464 1-106 (106)
216 PF02527 GidB: rRNA small subu 98.2 1.5E-05 3.4E-10 75.2 11.3 100 336-465 51-150 (184)
217 PF03291 Pox_MCEL: mRNA cappin 98.2 7.8E-06 1.7E-10 84.3 10.0 111 333-464 62-187 (331)
218 COG4076 Predicted RNA methylas 98.1 2.9E-06 6.4E-11 78.3 5.4 99 335-460 34-132 (252)
219 COG0421 SpeE Spermidine syntha 98.1 2.1E-05 4.5E-10 79.1 11.8 123 322-465 66-192 (282)
220 PF05724 TPMT: Thiopurine S-me 98.1 3.8E-06 8.3E-11 81.6 6.3 112 329-463 33-155 (218)
221 PF00891 Methyltransf_2: O-met 98.1 2.3E-05 4.9E-10 77.3 11.5 114 324-470 91-206 (241)
222 KOG0820 Ribosomal RNA adenine 98.1 1.2E-05 2.6E-10 78.6 9.0 130 322-467 47-180 (315)
223 TIGR00006 S-adenosyl-methyltra 98.1 1.2E-05 2.7E-10 81.4 9.5 88 326-416 13-104 (305)
224 PF10294 Methyltransf_16: Puta 98.1 6.6E-06 1.4E-10 77.1 7.1 111 331-467 43-159 (173)
225 PF04816 DUF633: Family of unk 98.1 2.1E-05 4.6E-10 75.5 10.5 121 337-489 1-121 (205)
226 KOG1500 Protein arginine N-met 98.1 1.9E-05 4.1E-10 79.0 9.9 103 333-460 177-279 (517)
227 KOG1253 tRNA methyltransferase 98.1 2.8E-06 6.1E-11 89.2 4.1 107 332-465 108-217 (525)
228 TIGR02081 metW methionine bios 98.0 1.7E-05 3.7E-10 75.6 8.7 72 332-413 12-84 (194)
229 KOG1975 mRNA cap methyltransfe 98.0 2.8E-05 6E-10 77.7 9.0 118 321-461 107-235 (389)
230 COG0357 GidB Predicted S-adeno 98.0 8E-05 1.7E-09 71.7 11.7 98 334-460 68-165 (215)
231 COG1867 TRM1 N2,N2-dimethylgua 97.9 3.2E-05 7E-10 79.0 8.6 103 334-465 53-155 (380)
232 PRK04148 hypothetical protein; 97.9 0.00015 3.2E-09 64.6 11.4 76 324-410 7-83 (134)
233 COG4262 Predicted spermidine s 97.9 0.00016 3.4E-09 73.4 12.5 157 332-509 288-451 (508)
234 KOG3010 Methyltransferase [Gen 97.9 3.3E-05 7.2E-10 74.4 7.3 132 322-480 21-157 (261)
235 PF06080 DUF938: Protein of un 97.9 0.00016 3.5E-09 68.9 11.8 135 334-490 26-173 (204)
236 KOG1099 SAM-dependent methyltr 97.9 3.6E-05 7.8E-10 73.3 7.1 111 335-473 43-170 (294)
237 PF06962 rRNA_methylase: Putat 97.9 7.4E-05 1.6E-09 66.9 8.7 116 360-488 1-121 (140)
238 PF04989 CmcI: Cephalosporin h 97.8 8.8E-05 1.9E-09 70.7 9.4 152 312-489 10-187 (206)
239 TIGR00478 tly hemolysin TlyA f 97.8 8E-05 1.7E-09 72.8 8.6 40 332-373 74-113 (228)
240 KOG3115 Methyltransferase-like 97.7 0.00017 3.8E-09 67.6 9.4 137 334-489 61-206 (249)
241 PF00398 RrnaAD: Ribosomal RNA 97.7 8.9E-05 1.9E-09 74.2 7.9 90 319-414 16-107 (262)
242 PF05219 DREV: DREV methyltran 97.7 0.00015 3.2E-09 71.2 8.9 94 334-463 95-188 (265)
243 KOG2361 Predicted methyltransf 97.7 7.8E-05 1.7E-09 71.9 6.8 107 336-464 74-184 (264)
244 PRK00536 speE spermidine synth 97.7 0.0011 2.4E-08 66.0 15.1 109 324-467 64-175 (262)
245 PLN02232 ubiquinone biosynthes 97.7 0.00016 3.5E-09 66.8 8.3 82 362-466 1-84 (160)
246 PRK11760 putative 23S rRNA C24 97.6 0.00044 9.5E-09 70.7 11.3 72 331-414 209-280 (357)
247 TIGR00497 hsdM type I restrict 97.6 0.00027 5.8E-09 77.3 10.4 150 311-460 193-352 (501)
248 PF01795 Methyltransf_5: MraW 97.5 6.9E-05 1.5E-09 76.0 4.2 89 325-416 12-105 (310)
249 TIGR03439 methyl_EasF probable 97.5 0.0011 2.3E-08 68.1 12.7 113 332-463 75-197 (319)
250 PF08123 DOT1: Histone methyla 97.5 0.00057 1.2E-08 65.7 10.1 119 326-469 35-163 (205)
251 PF05971 Methyltransf_10: Prot 97.5 0.00029 6.4E-09 71.1 8.3 146 334-483 103-274 (299)
252 cd00315 Cyt_C5_DNA_methylase C 97.5 0.00014 3.1E-09 73.3 5.9 78 336-422 2-80 (275)
253 PF11599 AviRa: RRNA methyltra 97.4 0.0015 3.2E-08 62.1 11.2 113 334-461 52-212 (246)
254 PRK10611 chemotaxis methyltran 97.4 0.00025 5.5E-09 71.6 5.9 109 335-463 117-262 (287)
255 TIGR01444 fkbM_fam methyltrans 97.4 0.00051 1.1E-08 61.7 7.3 59 336-396 1-59 (143)
256 PF05891 Methyltransf_PK: AdoM 97.4 0.00026 5.6E-09 67.9 5.5 104 334-461 56-159 (218)
257 COG3897 Predicted methyltransf 97.3 0.00019 4.1E-09 67.2 4.1 70 333-410 79-148 (218)
258 COG2384 Predicted SAM-dependen 97.3 0.004 8.7E-08 59.6 12.7 125 333-489 16-140 (226)
259 PF04445 SAM_MT: Putative SAM- 97.3 0.0006 1.3E-08 66.4 7.1 90 322-414 62-161 (234)
260 KOG1227 Putative methyltransfe 97.2 0.00014 3E-09 72.1 2.0 76 333-412 194-270 (351)
261 PF13679 Methyltransf_32: Meth 97.2 0.004 8.7E-08 56.2 11.0 81 332-414 24-109 (141)
262 COG1189 Predicted rRNA methyla 97.2 0.00065 1.4E-08 65.8 5.8 96 332-460 78-175 (245)
263 KOG1098 Putative SAM-dependent 97.1 0.00097 2.1E-08 71.9 7.3 109 331-462 42-157 (780)
264 PF01739 CheR: CheR methyltran 97.1 0.0016 3.5E-08 62.2 7.5 109 334-463 32-175 (196)
265 PF10354 DUF2431: Domain of un 97.0 0.013 2.8E-07 54.5 12.8 140 341-491 4-151 (166)
266 COG1352 CheR Methylase of chem 97.0 0.0039 8.5E-08 62.3 9.6 108 334-462 97-240 (268)
267 KOG1709 Guanidinoacetate methy 97.0 0.0069 1.5E-07 57.7 10.3 105 332-462 100-205 (271)
268 PF00145 DNA_methylase: C-5 cy 96.9 0.0035 7.6E-08 64.1 8.8 77 336-422 2-79 (335)
269 PF03059 NAS: Nicotianamine sy 96.9 0.0095 2E-07 59.7 11.3 107 335-463 122-230 (276)
270 PF05148 Methyltransf_8: Hypot 96.7 0.0099 2.1E-07 56.8 9.5 116 327-489 66-182 (219)
271 COG0500 SmtA SAM-dependent met 96.6 0.027 5.8E-07 48.8 11.3 107 337-468 52-160 (257)
272 KOG0024 Sorbitol dehydrogenase 96.6 0.011 2.4E-07 59.7 9.5 121 310-464 146-274 (354)
273 PRK01747 mnmC bifunctional tRN 96.6 0.015 3.3E-07 65.9 11.8 130 334-490 58-225 (662)
274 PF03141 Methyltransf_29: Puta 96.5 0.0042 9.1E-08 66.2 6.3 102 335-467 119-223 (506)
275 COG4798 Predicted methyltransf 96.4 0.094 2E-06 49.4 13.5 41 328-368 43-83 (238)
276 PF09243 Rsm22: Mitochondrial 96.3 0.017 3.8E-07 58.1 8.9 47 335-381 35-81 (274)
277 COG1064 AdhP Zn-dependent alco 96.3 0.024 5.2E-07 58.4 9.8 96 329-462 162-258 (339)
278 KOG3178 Hydroxyindole-O-methyl 96.2 0.034 7.3E-07 57.0 10.5 100 335-466 179-278 (342)
279 COG1568 Predicted methyltransf 96.1 0.025 5.3E-07 55.9 8.5 80 333-415 152-232 (354)
280 TIGR00675 dcm DNA-methyltransf 96.0 0.0088 1.9E-07 61.5 5.2 78 337-423 1-78 (315)
281 KOG2078 tRNA modification enzy 96.0 0.0023 5.1E-08 66.4 0.9 66 331-399 247-313 (495)
282 KOG1269 SAM-dependent methyltr 95.9 0.021 4.6E-07 59.6 7.5 105 330-460 107-212 (364)
283 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.8 0.016 3.5E-07 57.6 6.0 138 333-491 56-238 (256)
284 KOG1501 Arginine N-methyltrans 95.8 0.018 3.9E-07 60.1 6.3 61 336-398 69-129 (636)
285 PHA01634 hypothetical protein 95.8 0.044 9.5E-07 48.0 7.6 72 333-411 28-99 (156)
286 COG0270 Dcm Site-specific DNA 95.6 0.022 4.7E-07 59.0 6.1 81 335-423 4-86 (328)
287 KOG3045 Predicted RNA methylas 95.6 0.046 9.9E-07 53.6 7.7 87 333-465 180-266 (325)
288 PRK11524 putative methyltransf 95.5 0.024 5.2E-07 57.4 5.8 46 332-380 207-252 (284)
289 PRK10458 DNA cytosine methylas 95.4 0.088 1.9E-06 56.9 10.0 83 334-421 88-186 (467)
290 PRK11524 putative methyltransf 95.4 0.033 7.2E-07 56.4 6.4 73 387-466 9-82 (284)
291 PF10237 N6-adenineMlase: Prob 95.3 0.47 1E-05 43.9 13.2 125 316-479 6-135 (162)
292 PF01555 N6_N4_Mtase: DNA meth 95.2 0.028 6.1E-07 54.0 5.3 43 331-376 189-231 (231)
293 PF07942 N2227: N2227-like pro 94.9 0.4 8.7E-06 48.0 12.5 42 333-377 56-97 (270)
294 PRK13699 putative methylase; P 94.7 0.061 1.3E-06 52.7 5.9 49 331-382 161-209 (227)
295 KOG0822 Protein kinase inhibit 94.3 0.066 1.4E-06 57.4 5.4 105 336-462 370-477 (649)
296 PF05430 Methyltransf_30: S-ad 94.2 0.058 1.3E-06 47.6 4.1 78 387-491 33-110 (124)
297 PF00107 ADH_zinc_N: Zinc-bind 94.1 0.063 1.4E-06 47.0 4.1 89 343-465 1-91 (130)
298 PF07091 FmrO: Ribosomal RNA m 94.0 0.13 2.7E-06 50.7 6.3 73 333-410 105-177 (251)
299 COG1063 Tdh Threonine dehydrog 93.8 0.26 5.6E-06 51.5 8.8 103 330-465 165-271 (350)
300 KOG2782 Putative SAM dependent 93.8 0.036 7.9E-07 52.9 2.1 91 325-417 35-131 (303)
301 COG3129 Predicted SAM-dependen 93.5 0.11 2.3E-06 50.3 4.8 83 333-416 78-165 (292)
302 PF07279 DUF1442: Protein of u 93.4 0.57 1.2E-05 45.0 9.4 93 317-411 25-122 (218)
303 PRK13699 putative methylase; P 93.3 0.11 2.5E-06 50.7 4.9 72 388-467 3-75 (227)
304 TIGR03451 mycoS_dep_FDH mycoth 93.0 0.65 1.4E-05 48.3 10.4 102 328-462 171-275 (358)
305 PF05711 TylF: Macrocin-O-meth 92.9 0.68 1.5E-05 45.8 9.6 124 333-483 75-230 (248)
306 PF04672 Methyltransf_19: S-ad 92.7 1.1 2.3E-05 44.8 10.6 112 335-466 70-193 (267)
307 TIGR02822 adh_fam_2 zinc-bindi 92.7 1.3 2.8E-05 45.6 11.8 93 328-462 160-253 (329)
308 KOG3987 Uncharacterized conser 92.4 0.025 5.4E-07 53.6 -1.1 93 334-462 113-206 (288)
309 KOG2940 Predicted methyltransf 92.4 0.16 3.4E-06 49.1 4.1 100 334-461 73-172 (325)
310 KOG1562 Spermidine synthase [A 92.2 0.48 1E-05 47.6 7.4 110 333-461 121-234 (337)
311 PRK07576 short chain dehydroge 91.9 2.7 5.9E-05 41.5 12.7 78 333-413 8-95 (264)
312 PRK09424 pntA NAD(P) transhydr 91.8 2.1 4.6E-05 46.9 12.6 115 258-384 88-210 (509)
313 PRK09880 L-idonate 5-dehydroge 91.6 1.9 4.2E-05 44.4 11.8 101 330-464 166-267 (343)
314 cd08283 FDH_like_1 Glutathione 91.6 1.4 3E-05 46.4 10.8 50 327-377 178-228 (386)
315 KOG4174 Uncharacterized conser 91.4 2 4.4E-05 42.2 10.5 120 333-462 56-189 (282)
316 cd08254 hydroxyacyl_CoA_DH 6-h 91.3 1.6 3.5E-05 44.4 10.7 100 329-462 161-262 (338)
317 COG4301 Uncharacterized conser 91.0 5 0.00011 39.5 12.6 121 329-467 74-197 (321)
318 PRK06914 short chain dehydroge 90.7 4.4 9.4E-05 40.2 12.9 82 334-416 3-93 (280)
319 TIGR03201 dearomat_had 6-hydro 90.7 1.9 4.2E-05 44.6 10.6 50 329-384 162-212 (349)
320 PLN03154 putative allyl alcoho 90.7 1.6 3.5E-05 45.3 10.0 100 328-461 153-256 (348)
321 cd08230 glucose_DH Glucose deh 90.6 1.7 3.7E-05 45.0 10.2 95 331-462 170-268 (355)
322 PRK08213 gluconate 5-dehydroge 90.3 3.5 7.6E-05 40.4 11.6 80 333-415 11-100 (259)
323 cd08237 ribitol-5-phosphate_DH 90.1 1.5 3.3E-05 45.3 9.2 96 330-463 160-256 (341)
324 PRK08251 short chain dehydroge 90.0 6.3 0.00014 38.2 13.1 81 334-415 2-92 (248)
325 PRK10309 galactitol-1-phosphat 89.9 2.8 6.1E-05 43.2 11.1 103 328-462 155-259 (347)
326 KOG3201 Uncharacterized conser 89.8 0.97 2.1E-05 41.5 6.4 106 333-461 29-138 (201)
327 COG5459 Predicted rRNA methyla 89.7 0.36 7.9E-06 49.4 4.0 105 336-462 116-224 (484)
328 COG2961 ComJ Protein involved 89.6 1.9 4.1E-05 42.4 8.6 121 332-483 88-211 (279)
329 KOG2352 Predicted spermine/spe 89.5 0.64 1.4E-05 49.8 5.9 129 334-477 296-430 (482)
330 cd08294 leukotriene_B4_DH_like 89.4 2 4.3E-05 43.6 9.4 101 327-462 137-240 (329)
331 TIGR02825 B4_12hDH leukotriene 89.4 2 4.4E-05 43.8 9.5 100 327-461 132-235 (325)
332 PRK12429 3-hydroxybutyrate deh 89.4 4.8 0.0001 39.1 11.8 78 334-414 4-91 (258)
333 PRK06940 short chain dehydroge 89.4 4.9 0.00011 40.0 12.0 76 335-414 3-86 (275)
334 COG2933 Predicted SAM-dependen 89.3 0.69 1.5E-05 45.6 5.4 71 331-413 209-279 (358)
335 cd08281 liver_ADH_like1 Zinc-d 88.7 3 6.6E-05 43.5 10.4 102 328-462 186-289 (371)
336 PRK07533 enoyl-(acyl carrier p 88.5 6.4 0.00014 38.7 12.0 124 333-462 9-147 (258)
337 TIGR03366 HpnZ_proposed putati 88.4 4.7 0.0001 40.3 11.2 99 329-462 116-217 (280)
338 PRK07063 short chain dehydroge 88.2 9.4 0.0002 37.3 13.0 79 334-413 7-95 (260)
339 PRK07326 short chain dehydroge 88.2 4.6 0.0001 38.8 10.6 76 333-412 5-90 (237)
340 PRK07774 short chain dehydroge 88.1 5 0.00011 38.9 10.9 79 333-414 5-93 (250)
341 PRK05867 short chain dehydroge 88.0 6 0.00013 38.6 11.4 79 333-414 8-96 (253)
342 PRK09242 tropinone reductase; 87.8 12 0.00025 36.6 13.3 124 334-465 9-148 (257)
343 KOG4058 Uncharacterized conser 87.7 1 2.2E-05 40.7 5.0 71 326-398 65-135 (199)
344 PRK06139 short chain dehydroge 87.7 7.6 0.00017 40.1 12.4 81 333-416 6-96 (330)
345 PRK08945 putative oxoacyl-(acy 87.7 6.7 0.00014 38.1 11.5 81 332-414 10-102 (247)
346 PRK08594 enoyl-(acyl carrier p 87.7 8.6 0.00019 37.8 12.4 127 333-463 6-147 (257)
347 PRK07454 short chain dehydroge 87.6 9.3 0.0002 36.8 12.4 77 333-412 5-91 (241)
348 PF07669 Eco57I: Eco57I restri 87.6 1.3 2.9E-05 37.7 5.6 72 404-485 2-75 (106)
349 PRK06949 short chain dehydroge 87.6 6.9 0.00015 38.1 11.6 79 333-414 8-96 (258)
350 TIGR02818 adh_III_F_hyde S-(hy 87.5 4.9 0.00011 42.0 11.0 52 328-384 180-232 (368)
351 PRK07062 short chain dehydroge 87.5 13 0.00028 36.4 13.6 81 333-414 7-97 (265)
352 PRK08339 short chain dehydroge 87.5 11 0.00024 37.2 13.1 79 333-413 7-94 (263)
353 cd08293 PTGR2 Prostaglandin re 87.4 4.1 8.9E-05 41.7 10.3 99 330-461 149-252 (345)
354 PRK08085 gluconate 5-dehydroge 87.3 13 0.00028 36.1 13.4 80 333-415 8-97 (254)
355 COG0604 Qor NADPH:quinone redu 87.2 5.1 0.00011 41.4 10.7 102 329-465 138-243 (326)
356 COG3510 CmcI Cephalosporin hyd 87.2 4.5 9.7E-05 38.3 9.0 127 334-489 70-218 (237)
357 PRK07523 gluconate 5-dehydroge 87.1 10 0.00022 36.9 12.5 79 333-414 9-97 (255)
358 PRK07109 short chain dehydroge 87.1 11 0.00023 38.9 13.1 79 333-414 7-95 (334)
359 PF04378 RsmJ: Ribosomal RNA s 87.1 1.9 4.1E-05 42.6 7.0 71 340-414 62-135 (245)
360 PF03721 UDPG_MGDP_dh_N: UDP-g 87.0 1.9 4.2E-05 40.7 6.8 120 343-483 7-139 (185)
361 PRK07097 gluconate 5-dehydroge 87.0 12 0.00027 36.7 13.0 80 333-415 9-98 (265)
362 PRK08415 enoyl-(acyl carrier p 86.9 9.3 0.0002 38.2 12.2 124 334-463 5-143 (274)
363 PRK05599 hypothetical protein; 86.8 12 0.00026 36.5 12.7 76 336-413 2-86 (246)
364 cd08295 double_bond_reductase_ 86.7 4 8.6E-05 41.9 9.6 100 328-461 146-249 (338)
365 PRK12937 short chain dehydroge 86.6 15 0.00033 35.2 13.3 123 333-465 4-141 (245)
366 cd08278 benzyl_alcohol_DH Benz 86.5 5 0.00011 41.8 10.4 102 328-462 181-284 (365)
367 KOG2798 Putative trehalase [Ca 86.4 6.3 0.00014 40.2 10.2 38 334-374 151-188 (369)
368 PRK07831 short chain dehydroge 86.4 9.6 0.00021 37.3 11.9 81 333-414 16-107 (262)
369 cd08239 THR_DH_like L-threonin 86.3 6.1 0.00013 40.4 10.8 103 327-462 157-261 (339)
370 PF00106 adh_short: short chai 86.2 10 0.00022 34.0 11.2 83 336-421 2-97 (167)
371 PRK06124 gluconate 5-dehydroge 86.2 17 0.00037 35.3 13.5 79 333-414 10-98 (256)
372 PLN02989 cinnamyl-alcohol dehy 86.2 5.2 0.00011 40.7 10.2 80 333-413 4-86 (325)
373 PF01555 N6_N4_Mtase: DNA meth 86.2 0.56 1.2E-05 44.8 2.9 55 405-462 1-55 (231)
374 cd05188 MDR Medium chain reduc 86.1 5.4 0.00012 38.7 9.9 99 331-463 132-232 (271)
375 PRK08324 short chain dehydroge 86.1 7.8 0.00017 44.2 12.4 124 333-463 421-557 (681)
376 KOG1331 Predicted methyltransf 86.1 0.49 1.1E-05 47.3 2.3 98 333-462 45-143 (293)
377 PRK12939 short chain dehydroge 86.0 12 0.00026 36.0 12.3 79 333-414 6-94 (250)
378 PRK12744 short chain dehydroge 85.9 11 0.00025 36.7 12.1 122 334-465 8-147 (257)
379 PRK12746 short chain dehydroge 85.6 12 0.00025 36.4 11.9 124 334-463 6-146 (254)
380 PRK08063 enoyl-(acyl carrier p 85.5 14 0.0003 35.7 12.4 78 334-414 4-92 (250)
381 KOG1197 Predicted quinone oxid 85.4 4.6 9.9E-05 40.0 8.5 102 325-460 138-242 (336)
382 PRK06172 short chain dehydroge 85.4 15 0.00034 35.5 12.7 77 334-413 7-93 (253)
383 PLN02740 Alcohol dehydrogenase 85.3 6.7 0.00015 41.1 10.7 101 328-461 193-298 (381)
384 PRK12384 sorbitol-6-phosphate 85.3 11 0.00025 36.7 11.8 81 334-415 2-92 (259)
385 cd05285 sorbitol_DH Sorbitol d 85.1 8.1 0.00017 39.6 11.0 103 327-462 156-264 (343)
386 PRK05876 short chain dehydroge 85.1 15 0.00033 36.5 12.7 80 333-415 5-94 (275)
387 PTZ00357 methyltransferase; Pr 85.1 3 6.5E-05 46.6 7.8 75 336-410 703-798 (1072)
388 PF11968 DUF3321: Putative met 84.9 1.9 4.1E-05 41.7 5.6 129 321-489 31-178 (219)
389 PRK08159 enoyl-(acyl carrier p 84.8 18 0.00039 35.9 13.1 124 333-463 9-148 (272)
390 PRK06603 enoyl-(acyl carrier p 84.7 15 0.00033 36.1 12.4 125 333-463 7-146 (260)
391 cd08238 sorbose_phosphate_red 84.3 4.8 0.0001 42.8 9.1 49 329-377 171-222 (410)
392 PRK06701 short chain dehydroge 84.2 18 0.0004 36.3 13.0 125 333-463 45-181 (290)
393 PRK08643 acetoin reductase; Va 84.2 24 0.00053 34.2 13.6 77 334-413 2-88 (256)
394 PRK08589 short chain dehydroge 84.2 19 0.00042 35.6 13.0 78 333-414 5-92 (272)
395 PRK07889 enoyl-(acyl carrier p 84.2 9.1 0.0002 37.6 10.5 122 333-463 6-145 (256)
396 PRK06500 short chain dehydroge 84.0 21 0.00045 34.4 12.9 76 334-415 6-91 (249)
397 PRK09186 flagellin modificatio 83.9 17 0.00037 35.2 12.3 79 334-413 4-92 (256)
398 PRK07677 short chain dehydroge 83.9 18 0.0004 35.1 12.5 78 334-414 1-88 (252)
399 KOG0821 Predicted ribosomal RN 83.7 1.9 4.1E-05 41.6 4.9 66 329-398 46-111 (326)
400 PRK06505 enoyl-(acyl carrier p 83.7 17 0.00037 36.1 12.3 78 333-413 6-94 (271)
401 KOG2352 Predicted spermine/spe 83.5 6.1 0.00013 42.6 9.2 116 332-464 46-162 (482)
402 TIGR01963 PHB_DH 3-hydroxybuty 83.5 27 0.00058 33.7 13.4 78 335-415 2-89 (255)
403 PRK05653 fabG 3-ketoacyl-(acyl 83.3 18 0.00039 34.5 12.1 78 334-414 5-92 (246)
404 PRK08862 short chain dehydroge 83.2 24 0.00051 34.1 12.8 76 334-412 5-91 (227)
405 PRK07067 sorbitol dehydrogenas 83.2 16 0.00034 35.6 11.7 75 334-414 6-90 (257)
406 TIGR02415 23BDH acetoin reduct 83.1 24 0.00051 34.1 12.9 80 336-418 2-91 (254)
407 PRK06079 enoyl-(acyl carrier p 83.0 14 0.00031 36.1 11.3 123 333-463 6-143 (252)
408 cd05278 FDH_like Formaldehyde 82.8 6.5 0.00014 40.2 9.2 100 329-461 163-265 (347)
409 PRK06125 short chain dehydroge 82.4 26 0.00056 34.2 12.9 78 334-413 7-90 (259)
410 cd08232 idonate-5-DH L-idonate 82.2 12 0.00026 38.2 10.8 98 330-461 162-260 (339)
411 PLN02662 cinnamyl-alcohol dehy 82.0 15 0.00033 37.1 11.5 80 334-414 4-86 (322)
412 PF05050 Methyltransf_21: Meth 81.9 2.7 5.8E-05 37.9 5.3 45 339-383 1-50 (167)
413 PRK06181 short chain dehydroge 81.9 20 0.00044 34.9 12.0 75 335-412 2-86 (263)
414 KOG2912 Predicted DNA methylas 81.9 1.4 3E-05 44.7 3.5 78 338-416 107-190 (419)
415 PRK05872 short chain dehydroge 81.6 25 0.00054 35.4 12.7 79 333-415 8-96 (296)
416 PRK07666 fabG 3-ketoacyl-(acyl 81.5 32 0.00069 33.0 13.1 78 334-414 7-94 (239)
417 PRK13394 3-hydroxybutyrate deh 81.5 28 0.0006 33.8 12.8 79 334-415 7-95 (262)
418 TIGR03206 benzo_BadH 2-hydroxy 81.4 30 0.00065 33.3 12.9 79 334-415 3-91 (250)
419 PRK12742 oxidoreductase; Provi 81.3 24 0.00052 33.7 12.1 116 333-463 5-131 (237)
420 KOG3924 Putative protein methy 81.2 7.7 0.00017 40.7 8.6 132 325-481 184-330 (419)
421 PRK07102 short chain dehydroge 81.1 30 0.00064 33.3 12.7 77 336-414 3-86 (243)
422 cd08261 Zn_ADH7 Alcohol dehydr 81.1 13 0.00029 37.8 10.7 101 327-461 153-256 (337)
423 PRK12826 3-ketoacyl-(acyl-carr 80.9 36 0.00077 32.6 13.2 79 334-415 6-94 (251)
424 PRK07806 short chain dehydroge 80.8 26 0.00057 33.7 12.2 118 334-463 6-134 (248)
425 PRK07890 short chain dehydroge 80.7 31 0.00068 33.4 12.8 78 333-413 4-91 (258)
426 PRK05786 fabG 3-ketoacyl-(acyl 80.7 27 0.00058 33.4 12.2 118 333-463 4-135 (238)
427 cd08236 sugar_DH NAD(P)-depend 80.7 16 0.00034 37.3 11.1 103 327-462 153-257 (343)
428 cd08255 2-desacetyl-2-hydroxye 80.6 20 0.00044 35.2 11.6 49 327-376 91-140 (277)
429 PRK09072 short chain dehydroge 80.6 25 0.00054 34.4 12.2 77 334-414 5-90 (263)
430 PRK08263 short chain dehydroge 80.6 19 0.0004 35.6 11.3 76 334-415 3-88 (275)
431 PRK06198 short chain dehydroge 80.4 22 0.00048 34.5 11.7 79 333-414 5-94 (260)
432 PRK05650 short chain dehydroge 80.4 26 0.00057 34.4 12.3 76 336-414 2-87 (270)
433 TIGR02632 RhaD_aldol-ADH rhamn 80.4 26 0.00056 40.0 13.6 80 334-415 414-504 (676)
434 PLN02896 cinnamyl-alcohol dehy 80.4 22 0.00047 36.7 12.1 79 334-416 10-91 (353)
435 PRK06196 oxidoreductase; Provi 80.0 14 0.00031 37.4 10.5 75 333-414 25-109 (315)
436 PRK08267 short chain dehydroge 80.0 26 0.00057 34.1 12.0 75 336-415 3-88 (260)
437 PRK12829 short chain dehydroge 79.8 32 0.00069 33.4 12.6 80 330-414 7-96 (264)
438 PRK07814 short chain dehydroge 79.5 31 0.00067 33.8 12.4 78 333-413 9-96 (263)
439 PRK09291 short chain dehydroge 79.5 39 0.00084 32.7 13.0 78 335-415 3-84 (257)
440 PRK06182 short chain dehydroge 79.5 17 0.00037 35.8 10.6 73 334-415 3-85 (273)
441 cd08291 ETR_like_1 2-enoyl thi 79.4 12 0.00027 37.9 9.8 38 342-385 154-191 (324)
442 cd08285 NADP_ADH NADP(H)-depen 79.4 17 0.00037 37.3 11.0 102 327-461 160-264 (351)
443 PRK12747 short chain dehydroge 79.2 51 0.0011 31.9 13.7 124 334-463 4-144 (252)
444 PLN02827 Alcohol dehydrogenase 78.9 14 0.00031 38.7 10.3 101 329-462 189-294 (378)
445 KOG2651 rRNA adenine N-6-methy 78.7 6 0.00013 41.3 6.9 54 321-376 141-194 (476)
446 PRK06113 7-alpha-hydroxysteroi 78.5 30 0.00064 33.7 11.9 78 334-414 11-98 (255)
447 PF11899 DUF3419: Protein of u 78.4 5.2 0.00011 42.3 6.6 64 311-377 12-76 (380)
448 PRK07231 fabG 3-ketoacyl-(acyl 78.1 30 0.00066 33.2 11.7 77 334-414 5-91 (251)
449 PRK07984 enoyl-(acyl carrier p 78.1 29 0.00064 34.3 11.7 79 333-414 5-94 (262)
450 KOG0022 Alcohol dehydrogenase, 78.0 5.4 0.00012 40.7 6.2 56 326-385 185-240 (375)
451 cd08277 liver_alcohol_DH_like 77.9 19 0.00041 37.4 10.8 103 328-463 179-286 (365)
452 PRK12481 2-deoxy-D-gluconate 3 77.7 23 0.00049 34.6 10.8 77 333-414 7-93 (251)
453 PRK07791 short chain dehydroge 77.7 35 0.00075 34.2 12.3 79 333-414 5-102 (286)
454 PRK09422 ethanol-active dehydr 77.1 20 0.00043 36.5 10.5 102 327-461 156-259 (338)
455 PRK06194 hypothetical protein; 77.0 40 0.00086 33.4 12.5 82 334-418 6-97 (287)
456 PRK07370 enoyl-(acyl carrier p 77.0 19 0.00041 35.4 10.0 80 333-414 5-97 (258)
457 PRK07792 fabG 3-ketoacyl-(acyl 77.0 33 0.00072 34.7 12.0 80 333-415 11-100 (306)
458 cd08296 CAD_like Cinnamyl alco 76.9 17 0.00037 37.1 9.9 98 329-461 159-257 (333)
459 PRK05855 short chain dehydroge 76.9 32 0.0007 37.7 12.8 80 334-416 315-404 (582)
460 PRK06077 fabG 3-ketoacyl-(acyl 76.9 41 0.0009 32.3 12.3 121 334-464 6-141 (252)
461 PF03141 Methyltransf_29: Puta 76.8 1.7 3.7E-05 46.8 2.5 96 335-462 367-466 (506)
462 PRK08303 short chain dehydroge 76.7 49 0.0011 33.6 13.1 77 333-412 7-103 (305)
463 PRK12748 3-ketoacyl-(acyl-carr 76.6 38 0.00082 32.9 12.0 77 334-413 5-104 (256)
464 PRK07478 short chain dehydroge 76.4 65 0.0014 31.2 13.6 78 334-414 6-93 (254)
465 PRK06935 2-deoxy-D-gluconate 3 76.2 40 0.00086 32.8 12.0 78 333-414 14-101 (258)
466 PRK12859 3-ketoacyl-(acyl-carr 76.0 44 0.00095 32.6 12.3 81 333-415 5-107 (256)
467 PRK05875 short chain dehydroge 76.0 60 0.0013 31.8 13.4 80 334-414 7-96 (276)
468 PRK06128 oxidoreductase; Provi 76.0 59 0.0013 32.7 13.5 120 333-462 54-190 (300)
469 PRK07832 short chain dehydroge 75.9 56 0.0012 32.1 13.1 77 336-414 2-88 (272)
470 PRK08217 fabG 3-ketoacyl-(acyl 75.9 53 0.0012 31.5 12.8 79 333-414 4-92 (253)
471 cd08234 threonine_DH_like L-th 75.9 25 0.00055 35.6 10.9 99 327-461 153-255 (334)
472 cd08300 alcohol_DH_class_III c 75.9 23 0.00049 36.8 10.7 102 328-462 181-287 (368)
473 PRK06138 short chain dehydroge 75.9 45 0.00099 32.0 12.3 79 334-416 5-93 (252)
474 PLN02586 probable cinnamyl alc 75.5 29 0.00063 36.1 11.4 96 331-462 181-277 (360)
475 TIGR03589 PseB UDP-N-acetylglu 75.5 33 0.00073 35.0 11.7 75 334-413 4-83 (324)
476 PLN03209 translocon at the inn 75.4 30 0.00064 38.6 11.6 83 329-412 75-167 (576)
477 PRK07985 oxidoreductase; Provi 75.1 61 0.0013 32.5 13.3 120 333-462 48-184 (294)
478 PF02254 TrkA_N: TrkA-N domain 75.0 7.5 0.00016 33.0 5.7 64 342-413 4-71 (116)
479 COG0863 DNA modification methy 75.0 5.7 0.00012 39.9 5.7 50 330-382 219-268 (302)
480 PRK05993 short chain dehydroge 74.8 44 0.00096 33.0 12.1 72 334-414 4-86 (277)
481 PRK06197 short chain dehydroge 74.7 52 0.0011 33.0 12.8 81 333-414 15-105 (306)
482 PRK05866 short chain dehydroge 74.7 44 0.00095 33.6 12.1 77 334-413 40-126 (293)
483 PRK08264 short chain dehydroge 74.6 35 0.00077 32.6 11.1 70 334-413 6-82 (238)
484 PRK05717 oxidoreductase; Valid 74.5 51 0.0011 32.0 12.3 77 333-415 9-95 (255)
485 TIGR02819 fdhA_non_GSH formald 74.5 25 0.00055 37.2 10.7 113 329-462 181-298 (393)
486 PF04031 Las1: Las1-like ; In 74.2 18 0.0004 33.1 8.2 37 187-236 84-120 (154)
487 cd08243 quinone_oxidoreductase 74.0 27 0.00057 34.8 10.4 95 330-461 139-236 (320)
488 PRK10083 putative oxidoreducta 73.9 31 0.00067 35.1 11.0 52 327-384 154-208 (339)
489 PRK08265 short chain dehydroge 73.7 64 0.0014 31.5 12.8 75 334-414 6-90 (261)
490 TIGR01832 kduD 2-deoxy-D-gluco 73.5 56 0.0012 31.4 12.2 77 333-414 4-90 (248)
491 cd08245 CAD Cinnamyl alcohol d 73.2 43 0.00093 33.8 11.8 97 329-462 158-255 (330)
492 PRK08628 short chain dehydroge 72.9 59 0.0013 31.5 12.3 77 334-414 7-93 (258)
493 PRK06997 enoyl-(acyl carrier p 72.7 57 0.0012 32.0 12.2 126 333-463 5-145 (260)
494 cd08292 ETR_like_2 2-enoyl thi 72.6 24 0.00052 35.4 9.7 97 328-462 134-237 (324)
495 PRK08993 2-deoxy-D-gluconate 3 72.4 60 0.0013 31.5 12.2 75 334-413 10-94 (253)
496 PLN02178 cinnamyl-alcohol dehy 72.3 24 0.00052 37.0 9.8 94 332-462 177-272 (375)
497 PRK07578 short chain dehydroge 72.2 24 0.00052 32.9 9.0 102 336-465 2-113 (199)
498 cd00401 AdoHcyase S-adenosyl-L 71.8 31 0.00066 36.9 10.4 89 332-463 200-289 (413)
499 COG0677 WecC UDP-N-acetyl-D-ma 71.7 5.3 0.00011 42.0 4.5 121 343-487 16-151 (436)
500 PF03492 Methyltransf_7: SAM d 71.7 25 0.00054 36.5 9.6 40 335-374 18-72 (334)
No 1
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.7e-83 Score=680.47 Aligned_cols=426 Identities=38% Similarity=0.597 Sum_probs=381.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009769 60 HRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139 (526)
Q Consensus 60 aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~ 139 (526)
+|+.|+|+||+++. +.+++.+++.. ++...+++.|++|+++||+||+|++..||++|+++++
T Consensus 3 ~R~~A~~~L~~i~~-~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~- 64 (434)
T PRK14901 3 ARQLAWEILQAVAR-GAYADVALERV----------------LRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLGK- 64 (434)
T ss_pred HHHHHHHHHHHHHc-CCchHHHHHHH----------------HHhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcC-
Confidence 69999999999988 57776666442 2234578899999999999999999999999999986
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCC-CCCCCcccCCcH
Q 009769 140 EKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN-SLPLPKLEGNDR 217 (526)
Q Consensus 140 ~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~-~~~~~~~~~~~~ 217 (526)
|++.++++++++|||+|+|||+|++ +|++++|||+|++||+++.+..++||||||+++.++.+.. ....+ +
T Consensus 65 -~~~~~l~~~~r~iLrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~----~-- 137 (434)
T PRK14901 65 -KPAHKQPPDLRWLLHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLP----E-- 137 (434)
T ss_pred -CChhhcCHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCC----c--
Confidence 7788899999999999999999986 9999999999999999999899999999999999964321 11111 1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEe
Q 009769 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (526)
Q Consensus 218 ~~~~~l~~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (526)
....+++++||+|.||+++|.+.||.+++++++++++++||+++|||+++ ++++++.+.|++.|+..+..+++++.+.+
T Consensus 138 ~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 216 (434)
T PRK14901 138 DPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLR-TSLEEVQAALAEAGITATPIPGLPQGLRL 216 (434)
T ss_pred ChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCC-CCHHHHHHHHHHCCCceEECCCCCCeEEe
Confidence 12467899999999999999999999999999999999999999999999 79999999999999999999999999988
Q ss_pred eCCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
......+...+.|++|.+++||.+|++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.+++|
T Consensus 217 ~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n 296 (434)
T PRK14901 217 TGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296 (434)
T ss_pred cCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH
Confidence 75323466778999999999999999999999999999999999999999999999988789999999999999999999
Q ss_pred HHHcCCCccEEEEcCccccccc---cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCc
Q 009769 378 AKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 454 (526)
Q Consensus 378 ~~~~g~~~~v~~~~~D~~~~~~---~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~Lk 454 (526)
++++|+.+ ++++++|+..+.. ...+.||.|++||||||+|+++++|+++|..++.++..+..+|.++|.+++++||
T Consensus 297 ~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk 375 (434)
T PRK14901 297 AQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK 375 (434)
T ss_pred HHHcCCCe-EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999986 8999999987652 1236799999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 455 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 455 pGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
|||+|||+|||++++||+++|.+|+++||+|++++.. + +++||.|++||||+|+|+|.
T Consensus 376 pgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~-----------~--~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 376 PGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPK-----------Q--KIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred CCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCC-----------C--ccCCCCCCCCcEEEEEEEeC
Confidence 9999999999999999999999999999999876420 0 26899999999999999985
No 2
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.4e-80 Score=658.74 Aligned_cols=422 Identities=29% Similarity=0.467 Sum_probs=376.0
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009769 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (526)
Q Consensus 59 ~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (526)
.+|++|+.+|+++...+.+++.+++.. +. .++++|++|+++||+||++++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~ 65 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSV----------------LS--FLDDKDRRFFKELVWGVVRKEELLDWYINQLLK 65 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHH----------------HH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 369999999999999888877766431 12 588999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcH
Q 009769 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (526)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~ 217 (526)
+ | ++++++++|||+|+|||+|++ +|++++|||+|+|||++ ..++|||||||+++++.+ +
T Consensus 66 ~-~---~l~~~~r~iLr~~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~~------~------- 125 (431)
T PRK14903 66 K-K---DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVPE------P------- 125 (431)
T ss_pred C-C---CCCHHHHHHHHHHHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhhc------c-------
Confidence 5 4 699999999999999999988 79999999999999985 568999999999998511 0
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEe
Q 009769 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (526)
Q Consensus 218 ~~~~~l~~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (526)
.++++.||+|.|++++|.+.||.+++++++++++++||+++|||+++ .+++++.+.|++.|+..+..++++..+.+
T Consensus 126 ---~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 201 (431)
T PRK14903 126 ---KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGTEAVPGKHSPFSLIV 201 (431)
T ss_pred ---hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCc-CCHHHHHHHHHHCCCeeEECCCCCceEEE
Confidence 25889999999999999999999999999999999999999999999 79999999999999998888999988888
Q ss_pred eCCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
......+...+.|++|.+++||.+|++++.++++++|.+|||+|||||+||++++..+++.++|+|+|+++.+++.+++|
T Consensus 202 ~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n 281 (431)
T PRK14903 202 RKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH 281 (431)
T ss_pred cCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence 65222466778899999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 378 ~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
++++|+.+ ++++++|+..+.....+.||.|++||||||+|+++++|+++|+.+++++..+..+|.++|.+++++|||||
T Consensus 282 ~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 360 (431)
T PRK14903 282 AKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGG 360 (431)
T ss_pred HHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999976 88999999876533346799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCCCCC----CcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 458 ~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
+|||||||+.++|||++|++||++||+|++.++...... ......| ++++|+. ++||||+|+|+|.
T Consensus 361 ~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~-~~dGFf~a~L~k~ 430 (431)
T PRK14903 361 ILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGIWDGYG-FLMLPDE-TLTPFYVSVLRKM 430 (431)
T ss_pred EEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccccCCCc-EEECcCC-CCCcEEEEEEEeC
Confidence 999999999999999999999999999998765321110 1111235 6999986 7899999999985
No 3
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.1e-79 Score=653.38 Aligned_cols=424 Identities=33% Similarity=0.459 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009769 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140 (526)
Q Consensus 61 R~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~ 140 (526)
|+.|+|+||+++.++.+++.+... ...+++.|++|+++||+||++++..||++|+++++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~-------------------~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~-- 59 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL-------------------QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMD-- 59 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh-------------------hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC--
Confidence 789999999999988776655532 12478899999999999999999999999999987
Q ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcHHH
Q 009769 141 KTFSSMEPLLLQILRIGFYEIVK-LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219 (526)
Q Consensus 141 ~~~~~l~~~~~~iLrlg~~el~~-~~~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~~~ 219 (526)
|++++++++++ +||+++||+++ +++|++++|||||+|||+|++++.++||||||++++++.+.. . ..
T Consensus 60 ~~~~~l~~~~~-~L~~~~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~---~--------~~ 127 (426)
T TIGR00563 60 RPMKGKPRTVH-YLILVGLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEEL---L--------AE 127 (426)
T ss_pred CCccccCHHHH-HHHHHHHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhh---c--------ch
Confidence 78899999877 88888888766 679999999999999999999999999999999999963310 0 02
Q ss_pred HHHHHHhhcChHHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEeeC
Q 009769 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299 (526)
Q Consensus 220 ~~~l~~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~ 299 (526)
..++++.||+|.|++++|.+.|+ +++++++++++++||+++|||+.+ ++++++.+.|++.|+.....+++++.+++..
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 205 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTK-HSRDEWLALLAEAGMKGFPHDLAPDAVRLET 205 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCc-CCHHHHHHHHHhcCCceeeCCCCCCeEEECC
Confidence 45699999999999999999996 557799999999999999999999 7899999999999999888899999888864
Q ss_pred CcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHH
Q 009769 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379 (526)
Q Consensus 300 ~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~ 379 (526)
+ ..+...+.|++|++++||.+|++++..+++++|++|||+|||||++|+++++.++ .++|+|+|+++.+++.+++|++
T Consensus 206 ~-~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 206 P-AAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred C-CCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence 3 2456778899999999999999999999999999999999999999999999886 7899999999999999999999
Q ss_pred HcCCCccEEEEcCcccccccc-CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCE
Q 009769 380 LHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 458 (526)
Q Consensus 380 ~~g~~~~v~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~ 458 (526)
++|+...+++..+|....... ....||.|++||||||+|+++++|+++|..+++++.++..+|.++|.+++++|||||+
T Consensus 284 r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 284 RLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred HcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 999874455577787654321 2357999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 459 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 459 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
|||||||++++|||++|.+|+++||+|.+.... .+. ....|.++++||.+++||||+|+|+|.
T Consensus 364 lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~P~~~~~dGff~a~l~k~ 426 (426)
T TIGR00563 364 LVYATCSVLPEENSEQIKAFLQEHPDFPFEKTG--TPE--QVRDGGLQILPHAEEGDGFFYAKLIKK 426 (426)
T ss_pred EEEEeCCCChhhCHHHHHHHHHhCCCCeeccCC--Ccc--ccCCCcEEECCCCCCCCCeEEEEEEeC
Confidence 999999999999999999999999999765431 111 123567899999999999999999983
No 4
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.9e-79 Score=655.34 Aligned_cols=437 Identities=36% Similarity=0.613 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009769 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (526)
Q Consensus 59 ~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (526)
.+|+.|+|+||+++.++.+++.+++.. ++...++++|++|+++||+|+++++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~ 67 (444)
T PRK14902 4 NARELALEVLIKVENNGAYSNIALNKV----------------LKKSELSDKDKALLTELVYGTIQRKLTLDYYLAPFIK 67 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 479999999999999998887776542 2234688999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcH
Q 009769 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (526)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~ 217 (526)
+ ++++++++++|||+|+|||+|++ +|++++|||+|++||.|+++++++||||||++++++... ..+.. .
T Consensus 68 --~-~~~l~~~~r~iLrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~---~~~~~----~ 137 (444)
T PRK14902 68 --K-RKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLP---DIDEI----K 137 (444)
T ss_pred --h-hhhCCHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhcccc---ccccc----c
Confidence 5 89999999999999999999986 999999999999999999999999999999999986311 01111 1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEe
Q 009769 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (526)
Q Consensus 218 ~~~~~l~~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (526)
....+++++||+|.|++++|.+.||.+++.+++++++.++++++|||+.| .+++++.+.|++.|+.....++.++.+.+
T Consensus 138 ~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 216 (444)
T PRK14902 138 DPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGYEVEESLLSPEALVI 216 (444)
T ss_pred CHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHHcCceeEEcCCCCCeEEE
Confidence 23567999999999999999999999999999999999999999999998 78999999999999998889999999988
Q ss_pred eCCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
+. ..+...+.|++|.+++||.++++++..+++++|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.+++|
T Consensus 217 ~~--~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n 294 (444)
T PRK14902 217 EK--GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN 294 (444)
T ss_pred eC--CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 75 3467788999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 378 ~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
++++|+.+ ++++++|+..+.....+.||.|++||||||+|+++++|+++|.+++.++..+..+|.++|..++++|||||
T Consensus 295 ~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG 373 (444)
T PRK14902 295 AKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGG 373 (444)
T ss_pred HHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999986 89999999876533336799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCCCCCCcc--cCCceEEEcCCCCCCCceEEEEEEec
Q 009769 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV--TKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 458 ~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
+|||+|||++++||+.++..++++|++|+++++....+.... ...|+++++||.+++||||+|+|+|.
T Consensus 374 ~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 374 ILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred EEEEEcCCCChhhhHHHHHHHHHhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999999999886543222111 24578999999999999999999985
No 5
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.4e-79 Score=653.96 Aligned_cols=436 Identities=37% Similarity=0.622 Sum_probs=381.3
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009769 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (526)
Q Consensus 59 ~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (526)
.+|++|+|+||+++.++.+++.+.... ++...+++.|++|+++||+||++++..||++|+++++
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 66 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRM----------------LERSSLERNDRALATELVNGVLRYRLQLDFIISRFYH 66 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999998888776542 2234688899999999999999999999999999996
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcH
Q 009769 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (526)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~ 217 (526)
|++.++++++++|||+|+|||+|++ +|++++|||+|+|||+|+++.+++|||||||+++++........+. .
T Consensus 67 --~~~~rl~~~~r~iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~-----~ 139 (445)
T PRK14904 67 --HDLEKAAPVLKNILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKG-----M 139 (445)
T ss_pred --CChhhCCHHHHHHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccc-----c
Confidence 8899999999999999999999986 9999999999999999999999999999999999964321111110 1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEe
Q 009769 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (526)
Q Consensus 218 ~~~~~l~~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (526)
....+++++||+|.||+++|.+.||.+++.+++++++++|++++|||+.+ .+++++.+.|...|+++...++. . +.+
T Consensus 140 ~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~~~~~~~~~~~-~-~~~ 216 (445)
T PRK14904 140 PEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLK-TTPEKFLAAPADASVTFEKSGLP-N-FFL 216 (445)
T ss_pred chHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCC-CCHHHHHHHHHhCCCceEEcCcc-e-EEE
Confidence 12456999999999999999999999999999999999999999999998 79999999999999987766542 2 344
Q ss_pred eCCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
.... ....+.|.+|.+++||+++++++.++.+.+|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.+++|
T Consensus 217 ~~~~--~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 294 (445)
T PRK14904 217 SKDF--SLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294 (445)
T ss_pred eccc--cccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 3321 11226799999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 378 ~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
++++|+.+ ++++++|+..+.. ...||.|++||||||+|+++++|+++|..+++++..+..+|..+|..++++|||||
T Consensus 295 ~~~~g~~~-v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG 371 (445)
T PRK14904 295 ASALGITI-IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGG 371 (445)
T ss_pred HHHhCCCe-EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999975 8999999987653 35799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCCCCCCc---ccCCceEEEcCCCC-CCCceEEEEEEec
Q 009769 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKH-SLDGAFAARLVRA 525 (526)
Q Consensus 458 ~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~P~~~-~~dGff~a~l~k~ 525 (526)
+|||+|||++++|||++|.+|+++|++|++.+....++..+ ....|+++++|+.+ ++||||+|+|+|.
T Consensus 372 ~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~a~l~k~ 443 (445)
T PRK14904 372 VLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFAQRLRKN 443 (445)
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEEEEEEec
Confidence 99999999999999999999999999998876543333221 23467899999987 8999999999996
No 6
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.3e-79 Score=648.80 Aligned_cols=424 Identities=32% Similarity=0.470 Sum_probs=378.9
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009769 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (526)
Q Consensus 59 ~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (526)
.+|+.|+|+||+++.++.+++.+++.. ++ .+++.|++|+++||+||++++..||++|+++++
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 64 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPAL----------------QQ--KVSDKDRALLQELCYGVLRRLPRLEWLIAQLLA 64 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHH----------------Hh--hCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 379999999999999999888776542 11 477899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcHH
Q 009769 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218 (526)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~~ 218 (526)
|+++++++++++|||+|+|||+|+++|++++|||+|+|||+|++++.++|||||||+++++.+. ++. +
T Consensus 65 --~~~~~l~~~~r~iLrla~yell~~~iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~----~~~---~--- 132 (427)
T PRK10901 65 --KPLKGKQRIVHALLLVGLYQLLYTRIPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEE----LLA---E--- 132 (427)
T ss_pred --CCccccCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhh----hhh---h---
Confidence 7889999999999999999999999999999999999999999999999999999999986331 110 0
Q ss_pred HHHHHHHhhcChHHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEee
Q 009769 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298 (526)
Q Consensus 219 ~~~~l~~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~ 298 (526)
....+|+.||+|.|++++|.+.|| +++++++++++++||+++|||+++ .+++++.+.|++.|+..+..+++++.+.+.
T Consensus 133 ~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (427)
T PRK10901 133 LQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRH-HSRDAYLALLAEAGIEAFPHAVGPDAIRLE 210 (427)
T ss_pred hhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHhCCCceeecCCCCCeEEEC
Confidence 123579999999999999999997 668899999999999999999999 789999999999999998889999999886
Q ss_pred CCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHH
Q 009769 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (526)
Q Consensus 299 ~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~ 378 (526)
.+. .+...++|++|.+++||.+|++++..+++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++|+
T Consensus 211 ~~~-~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~ 288 (427)
T PRK10901 211 TPV-PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENL 288 (427)
T ss_pred CCC-CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHH
Confidence 542 3567788999999999999999999999999999999999999999999998653 89999999999999999999
Q ss_pred HHcCCCccEEEEcCcccccccc-CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 379 KLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 379 ~~~g~~~~v~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
+++|+. ++++++|+.+.... ..++||.|++||||||.|+++++|+++|..++.++..+..+|.++|..+.++|||||
T Consensus 289 ~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG 366 (427)
T PRK10901 289 QRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG 366 (427)
T ss_pred HHcCCC--eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999986 57889999875432 235799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 458 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 458 ~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
++||+|||++++||+++|..++++|+++++++... ...+.++++||.+++||||+|+|+|.
T Consensus 367 ~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~-------~~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 367 TLLYATCSILPEENEQQIKAFLARHPDAELLDTGT-------PQQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC-------CCCCceEECCCCCCCCCeEEEEEEEC
Confidence 99999999999999999999999999998876421 11233799999999999999999984
No 7
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-64 Score=517.36 Aligned_cols=346 Identities=39% Similarity=0.579 Sum_probs=299.1
Q ss_pred CCCchhHHHHHHHHHHh-cCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcHHHHHHHHHhhcChHHHHHHHHHhhCHH
Q 009769 166 MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244 (526)
Q Consensus 166 ~p~~~~inEaV~lak~~-~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~P~w~~~~~~~~~g~~ 244 (526)
+|++++++++|+.|+.. ......+|+|++|+++.+.......... ... ..|++|.|++++|.+.||.+
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~~~---------~~~--~~~~~p~w~~~~~~~~~~~~ 69 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEIL---------RPA--FRYSHPEWLVEKLPDALGED 69 (355)
T ss_pred CCcHHHHHHHHHHHHhcccchhhhhhhhhhHhhhhhccchhhhhhh---------ccc--ccccCcHHHHHHHHHHcChH
Confidence 58899999999999954 5567899999999999987543211100 001 56999999999999999998
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEeeCCcchhhccccccccceeeccchHHH
Q 009769 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 324 (526)
Q Consensus 245 ~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~l 324 (526)
+++.++++++.+++.++|||+++ .+++++.+.|+..++......+.+..+++.... ++...+.|.+|++++||++|++
T Consensus 70 ~~~~~~~a~~~~~~~~~Rvn~lk-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~G~~~vQd~sS~l 147 (355)
T COG0144 70 EAEAIAAALLRPPPRSLRVNTLK-ADVEELLEALEEAGVLDEKPWVLDEVLRIEASG-PIGRLPEFAEGLIYVQDEASQL 147 (355)
T ss_pred HHHHHHHHcCCCCCeeEEEcCcc-CCHHHHHHHHhhcccccccCCccccEEEecCCC-CcccChhhhceEEEEcCHHHHH
Confidence 89999999999999999999999 899999999999887766654455666765543 4566778999999999999999
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEE-EEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC-
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST- 402 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v-~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~- 402 (526)
++.+++++||++|||+||||||||+|+|++|.+.+.+ +|+|+++.+++.+++|++++|+.| +.+++.|...+.....
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccc
Confidence 9999999999999999999999999999999875555 999999999999999999999998 7788888876654332
Q ss_pred -CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHh
Q 009769 403 -VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 481 (526)
Q Consensus 403 -~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 481 (526)
.+||+||+||||||+|+++|+|+++|+++..++..++.+|.+||.+|+++|||||+|||||||++++|||++|.+||++
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEecCCCCCCCCc----ccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 482 HPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 482 ~~~~~~~~~~~~~~~~~----~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
+++|+++++...+.... ....+.++++||.|++||||+|+|+|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 307 HPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred CCCceeecccccccccccccccccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 99999988754322211 223456899999998899999999986
No 8
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.9e-59 Score=497.10 Aligned_cols=296 Identities=27% Similarity=0.354 Sum_probs=266.9
Q ss_pred cChHHHHHHHHHhhCH-HHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEeeCC---cch
Q 009769 228 SHPVWMVRRWTKYLGQ-EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG---LQN 303 (526)
Q Consensus 228 s~P~w~~~~~~~~~g~-~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~---~~~ 303 (526)
.+|.||+++|.+.||. +++++++++++++++.+||||++| ++++++.+.|++.|+..+..+|+++.+.+..+ ...
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK-~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~ 81 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLK-ISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALP 81 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCC
Confidence 5899999999999997 689999999999999999999999 79999999999999999999999998888642 113
Q ss_pred hhccccccccceeeccchHHHHHHhc--CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc
Q 009769 304 VIQAGLLKEGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (526)
Q Consensus 304 ~~~~~~~~~G~~~iQd~~s~l~~~~l--~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~ 381 (526)
+..+++|..|.+++||++|++++.++ ++++|++|||+||||||||+++|++|++.|.|+|+|+++.|++.+++|++++
T Consensus 82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~ 161 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC 161 (470)
T ss_pred cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 56788899999999999999999998 8899999999999999999999999998999999999999999999999999
Q ss_pred CCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 382 g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
|+.+ +.+.+.|...+.......||+||+|+||||+|+++|+|+++|.++++++..++.+|++||.+|+++|||||+|||
T Consensus 162 G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVY 240 (470)
T PRK11933 162 GVSN-VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVY 240 (470)
T ss_pred CCCe-EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9987 788899998776545568999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCChhhhHHHHHHHHHhCCCC-eEecCCCCCCC--CcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 462 STCSIDPEENEERVEAFLLRHPEF-SIDPADGLVPS--DFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 462 stcs~~~~Ene~vv~~~l~~~~~~-~~~~~~~~~~~--~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
||||++++|||++|++||++|+++ +++++...++. ......|++|++||.+++||||+|+|+|.
T Consensus 241 STCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 241 STCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCcEEeccccccccccccccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 999999999999999999999984 45555322221 11234678999999999999999999985
No 9
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=2.5e-56 Score=448.76 Aligned_cols=420 Identities=32% Similarity=0.377 Sum_probs=339.8
Q ss_pred hcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHH
Q 009769 83 KKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162 (526)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~~~~~~l~~~~~~iLrlg~~el~ 162 (526)
+..-++.++.+.+...+-+++..++++.+... .+-+++.++++...+..+.......-......+.+..+++ +..
T Consensus 11 ~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~ 85 (460)
T KOG1122|consen 11 EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEE 85 (460)
T ss_pred ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhccccccccccCcccc----ccc
Confidence 34445555666555555555566777788777 8899999999998888777654432233445555555555 444
Q ss_pred hcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcccCCcHHHHHHHHHhhcChHHHHHHHHHhh
Q 009769 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL 241 (526)
Q Consensus 163 ~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~P~w~~~~~~~~~ 241 (526)
.+. +| +.+.|.+...-.......|.|.....-.+... -......++..|++-..+.+.+.+.+
T Consensus 86 ~~~~~P----~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~------------~~~l~~~~~~~y~y~~~l~~~~~e~~ 149 (460)
T KOG1122|consen 86 EKDSVP----DLQNVDLRIVELVPVLGDFKNLKEPGRLRSEY------------CGQLKKDGAHYYAYGVFLAEKLMELF 149 (460)
T ss_pred ccccCC----ccchhhHHhhhhhhhhcchhcccccccchhhH------------HHHHHhcccceechHHHHHHHhcccc
Confidence 444 45 55666666554444444555543322211100 01123346778999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCc-eeccCCCceEEeeCCcchhhccccccccceeeccc
Q 009769 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 320 (526)
Q Consensus 242 g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~ 320 (526)
...++.++++|+..++|+++|.||+| +-+.+++..|...|+.. ....|...++++.....++..++.|..|++.+|+.
T Consensus 150 ~~~ev~~~~e~~~~~rp~tir~ntlk-~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~ 228 (460)
T KOG1122|consen 150 PLVEVYEFLEANEKPRPVTIRTNTLK-TRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNA 228 (460)
T ss_pred cHHHHHHHHHhhcCCCCeeEEecccc-hhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccC
Confidence 99999999999999999999999999 56677777787777765 44568888888877766777888999999999999
Q ss_pred hHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc-
Q 009769 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 399 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~- 399 (526)
+|.+++..++|+||++|||+||+|||||+|+|.+|.+.|.|+|+|.+..++..++.|+.++|+.| ..+++.|...++.
T Consensus 229 sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 229 SSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEK 307 (460)
T ss_pred cccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 5578899988763
Q ss_pred cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHH
Q 009769 400 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 479 (526)
Q Consensus 400 ~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 479 (526)
..+..||+||+|+||||+|++.|.+.++|.++..++.++..+|+++|.+|..++++||+|||||||+.++|||.+|.++|
T Consensus 308 ~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL 387 (460)
T KOG1122|consen 308 EFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYAL 387 (460)
T ss_pred ccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHH
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCeEecCCCCCCCCc--------ccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 480 LRHPEFSIDPADGLVPSDF--------VTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
.++|+++++|..+.++... .+...+.|++||.|.+||||+|+|+|.
T Consensus 388 ~K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~ 441 (460)
T KOG1122|consen 388 KKRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKA 441 (460)
T ss_pred HhCCceEeccccccCCCCCcccCcccCcchhheeeecCcccCCchHHHHHHHhh
Confidence 9999999999887766543 233456789999999999999999874
No 10
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=5.6e-55 Score=438.74 Aligned_cols=273 Identities=41% Similarity=0.649 Sum_probs=241.9
Q ss_pred HHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEe-eCCcchhhccccccccceeeccchHHHHHH
Q 009769 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV-KTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327 (526)
Q Consensus 249 ~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~ 327 (526)
|++++|.+||+++|||+++ ++++++.+.|++.|+..+..++.++.+.+ ......+...+.|++|++++||++|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k-~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLK-ISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTT-SSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCc-CCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 6789999999999999999 89999999999999999988888887332 222235677889999999999999999999
Q ss_pred hcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCc
Q 009769 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCD 406 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~fD 406 (526)
++.+++|+.|||+||||||||++++++|.+.|.|+|+|+++.++..++.|++++|+.+ +.++..|+....... ...||
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999987 677778988874332 34699
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccC----cCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV----KPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~L----kpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
.|++|+||||+|+++++|+++|.++++++..++.+|.++|++|++++ ||||++||||||++++|||++|++||++|
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCeEecCCCCCCCC-c---ccCCceEEEcCCCCCCCceEEEEEE
Q 009769 483 PEFSIDPADGLVPSD-F---VTKHGFFFSDPIKHSLDGAFAARLV 523 (526)
Q Consensus 483 ~~~~~~~~~~~~~~~-~---~~~~g~~~~~P~~~~~dGff~a~l~ 523 (526)
++|+++++....+.. + ....++++++||.+++||||+|+||
T Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 239 PDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp TSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred CCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 999999876544332 1 2356889999999999999999997
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=7.8e-50 Score=398.79 Aligned_cols=260 Identities=32% Similarity=0.456 Sum_probs=227.3
Q ss_pred EEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEeeCCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEe
Q 009769 261 LRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340 (526)
Q Consensus 261 lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl 340 (526)
+|||++| ++++++++.|++.|+.....+ .+..+.+..+...+..++.|.+|++++||.+|++++.++++++|++|||+
T Consensus 1 ~RvN~lk-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLK-ISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCC-CCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 6999999 799999999999998776544 45666665332236678889999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccc
Q 009769 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420 (526)
Q Consensus 341 ~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l 420 (526)
|||||++|+++++++++.++|+|+|+++.+++.+++|++++|+.+ +.+++.|+..+... ...||+|++||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-~~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAA-VPKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhh-ccCCCEEEEcCCCCCCccc
Confidence 999999999999998878899999999999999999999999976 89999998776432 3469999999999999999
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCCCC-CCCC--
Q 009769 421 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-VPSD-- 497 (526)
Q Consensus 421 ~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~-~~~~-- 497 (526)
+++|+.+|.++++++..+..+|.++|.+++++|||||+|||||||++++|||++|++|+++|+++.+.+.... ++..
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPKGDEFFGANK 236 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEeccCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999886632211 1110
Q ss_pred -cccCCceEEEcCCCCCCCceEEEEEEe
Q 009769 498 -FVTKHGFFFSDPIKHSLDGAFAARLVR 524 (526)
Q Consensus 498 -~~~~~g~~~~~P~~~~~dGff~a~l~k 524 (526)
.....++++++||.|++||||+|+|+|
T Consensus 237 ~~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 237 GKEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 112457899999999999999999987
No 12
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=9.9e-31 Score=261.51 Aligned_cols=278 Identities=26% Similarity=0.377 Sum_probs=219.4
Q ss_pred HHHHHHHHHcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCC---------ceeccCCCceEEeeCCcchhhccccccccc
Q 009769 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP---------HELSLHLDEFIRVKTGLQNVIQAGLLKEGL 314 (526)
Q Consensus 244 ~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~~~~L~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 314 (526)
+.++++.-..+.+.|-++|+||++ .+.++....|...+.. +-.+++++..+.+.. ...+..+++|+.|.
T Consensus 117 ~~~~~l~~t~~~~~pr~vRINtlk-~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~-~n~i~~~~ly~~g~ 194 (413)
T KOG2360|consen 117 KSLRELKLTMKIPLPRYVRINTLK-GTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPP-SNFIVEHELYKNGK 194 (413)
T ss_pred HHHHHhhccCCCCCceeEEeeccc-CchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCC-CcceeeccccccCc
Confidence 344444432336788999999999 5677777766654332 223455555555553 23466788999999
Q ss_pred eeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcc
Q 009769 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (526)
Q Consensus 315 ~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~ 394 (526)
+++||.+|++++.++++.+|..|+|+||+||.+|+|+|..+.+.++|+|+|.++.+.+.++..++..|++. ++.+.+|+
T Consensus 195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df 273 (413)
T KOG2360|consen 195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF 273 (413)
T ss_pred eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 67779998
Q ss_pred cccc-ccCCCCCcEEEEcCCCCCCccccCCchhh--ccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhh
Q 009769 395 RTFA-DNSTVKCDKVLLDAPCSGLGVLSKRADLR--WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 471 (526)
Q Consensus 395 ~~~~-~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~--~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~En 471 (526)
.... +..-.....||+||+|||+|+..+.-... -...++.++.|...|..++.+|+.+-. =-+++|||||++.+||
T Consensus 274 ~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~-~k~vvystcs~~reen 352 (413)
T KOG2360|consen 274 LNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPN-LKRLVYSTCSLHREEN 352 (413)
T ss_pred cCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCc-hhheeeecchhhhhhh
Confidence 8742 11124467899999999999987765544 335678899999999999999998544 3479999999999999
Q ss_pred HHHHHHHHHhCCCC-eEec--CCCCCCC----CcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 472 EERVEAFLLRHPEF-SIDP--ADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 472 e~vv~~~l~~~~~~-~~~~--~~~~~~~----~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
|++|+..|...|++ ++.+ +.+.++. .+...++.++..|...+++|||+|.+.|+
T Consensus 353 e~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p~~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 353 EQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRASPKSTLTIGFFVALFERV 413 (413)
T ss_pred hHHHHHHHhhChhHhhhchhhcchhhhhcCCccccccccceecccCCCCcceEEEEEeecC
Confidence 99999999999864 4444 3333332 23345678999999999999999988763
No 13
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-29 Score=254.70 Aligned_cols=185 Identities=33% Similarity=0.481 Sum_probs=154.5
Q ss_pred ccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccC---CcEEEEEcCChhHHHHHHHHHHHcCCCcc
Q 009769 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSV 386 (526)
Q Consensus 310 ~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~n~~~~g~~~~ 386 (526)
..-|.++.||..|++++.+|+++||++||||||+||+||+++.+.+.. .|.|+|+|.++.|+..+...+++..-.+
T Consensus 132 ~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~- 210 (375)
T KOG2198|consen 132 TGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN- 210 (375)
T ss_pred cccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-
Confidence 457999999999999999999999999999999999999999887653 3699999999999999999998776654
Q ss_pred EEEEcCcccccccc--------CCCCCcEEEEcCCCCCCccccCCchhhcc-CCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 387 IRTIHADLRTFADN--------STVKCDKVLLDAPCSGLGVLSKRADLRWN-RRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 387 v~~~~~D~~~~~~~--------~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~-~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
+.+...|+..++.. ....||+||+|+||||.|++++++++--. +....-..|..+|.+||.+++++||+||
T Consensus 211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375)
T KOG2198|consen 211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375)
T ss_pred eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC
Confidence 56667776655432 23579999999999999999999987322 3333335688899999999999999999
Q ss_pred EEEEEeCCCChhhhHHHHHHHHHhCC-CCeEecCCCCCC
Q 009769 458 VLVYSTCSIDPEENEERVEAFLLRHP-EFSIDPADGLVP 495 (526)
Q Consensus 458 ~lvystcs~~~~Ene~vv~~~l~~~~-~~~~~~~~~~~~ 495 (526)
+|||||||+.|.|||.||+..|+.+. .++++.....+|
T Consensus 291 ~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~lp 329 (375)
T KOG2198|consen 291 RLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGDLP 329 (375)
T ss_pred EEEEeccCCCchhhHHHHHHHHHHhcCcccceeeccccc
Confidence 99999999999999999999999875 466665544433
No 14
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.95 E-value=1.4e-27 Score=215.62 Aligned_cols=134 Identities=22% Similarity=0.324 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCc-hHHHhhcCCCCCCCcchhhhhhcccC-CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009769 57 VSPHRAVSAVRLMRIQFGGAF-ADLLNKKGKGSGDNEMGYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLIC 134 (526)
Q Consensus 57 ~~~aR~~A~q~Ly~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~ 134 (526)
|+.+|+.|+|+||+|+.++.. .+.+.+.. ...+ .+ ..+....+..|+..|+.||.+|+..||.+|.
T Consensus 10 R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~-----------~~~~-~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~ 77 (151)
T COG0781 10 RRQARELAVQALYQWELSGSVSAEDILEDI-----------EEEF-VENELDIELADSEYFRSLVKGVLENQEELDELIS 77 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHH-----------HHHH-hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999997662 22222210 0000 01 1122228899999999999999999999999
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Q 009769 135 LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (526)
Q Consensus 135 ~~l~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~ 203 (526)
+++++ |+++||++++|+|||+|+|||+|.+ +|..|+|||||+|||.|+++++++||||||+++++...
T Consensus 78 ~~L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~~ 146 (151)
T COG0781 78 PHLKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKLR 146 (151)
T ss_pred HHHcc-CCHHHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHhh
Confidence 99998 9999999999999999999999975 99999999999999999999999999999999998643
No 15
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.94 E-value=2.1e-27 Score=213.33 Aligned_cols=130 Identities=26% Similarity=0.460 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcc--cCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009769 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL 136 (526)
Q Consensus 59 ~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~ 136 (526)
++|+.|+|+||+++.++.. +..... +....+. .....++..|++|+++|++||++++..||++|+++
T Consensus 2 ~aR~~A~q~L~~~~~~~~~-~~~~~~----------~~~~~l~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~ 70 (134)
T PF01029_consen 2 KARELALQALYQVEFNDEE-DEEEGQ----------FLDEALEEELEESELSEEDRAFARELVYGVLRNKEELDALISKL 70 (134)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHH----------HHHHHHHHHHHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccCCc-hhhhhh----------hHHHHHhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999777665 111111 1111111 12457899999999999999999999999999998
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009769 137 CHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (526)
Q Consensus 137 l~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~ 200 (526)
+++ |+++++++++++|||+|+|||+|+ ++|++++|||||++||+|+++++++||||||++++|
T Consensus 71 ~~~-~~~~rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~R 134 (134)
T PF01029_consen 71 LKN-WPLERLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIAR 134 (134)
T ss_dssp STS-STGGGSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH
T ss_pred hcc-CCccccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhhC
Confidence 855 999999999999999999999998 799999999999999999999999999999999986
No 16
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.94 E-value=9.4e-27 Score=207.95 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009769 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (526)
Q Consensus 58 ~~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (526)
+.+|+.|+|+||+++..+.+.+.+.+.. .....+++.|++|+++|++|+++++..||++|++++
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l 65 (130)
T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLL----------------ELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHL 65 (130)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 4679999999999999888877766542 122346788999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 009769 138 HDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (526)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~ 201 (526)
++ |+++++++++++|||+|+|||+|++ +|++++|||+|+|||+|+++++++||||||+++.++
T Consensus 66 ~~-~~~~~l~~~~~~iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (130)
T cd00619 66 RN-WSLDRLAIVERAILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhhc
Confidence 76 8899999999999999999999987 999999999999999999999999999999999874
No 17
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.94 E-value=1.6e-26 Score=208.22 Aligned_cols=129 Identities=24% Similarity=0.339 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009769 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (526)
Q Consensus 58 ~~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (526)
+.+|+.|+|+||+++..+.+.+.+++.. +....+++.|++|+++||+||++++..||++|++++
T Consensus 4 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l 67 (137)
T PRK00202 4 RKAREAAVQALYQWELSGNDIAEIIEAQ----------------LLEEQYDKADPAYFRSLVRGVVENQAELDELISPYL 67 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHH----------------HHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4689999999999999888887766442 122347889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Q 009769 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (526)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~~~ 203 (526)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|++||.|+.+..++||||||+++.++..
T Consensus 68 ~~-~~~~~l~~~~~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~~~ 133 (137)
T PRK00202 68 KD-WTLERLDPVERAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKELR 133 (137)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHHhh
Confidence 66 999999999999999999999998 799999999999999999999999999999999998753
No 18
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.94 E-value=3e-26 Score=204.45 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009769 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (526)
Q Consensus 58 ~~aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (526)
+.+|+.|+++||+++..+.+.+.+.+.. .+...+++.|++|++++++|+++++..||++|++++
T Consensus 2 ~~~R~~a~~~l~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~ 65 (129)
T TIGR01951 2 RKARELALQALYQWELSGNDVEEIIEEF----------------LEERELDEEDREYFLELVRGVLENQEEIDELISPHL 65 (129)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3679999999999998888887776542 122357889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009769 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (526)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~ 200 (526)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|++||.++++.+++|||||||++++
T Consensus 66 ~~-~~~~~l~~~~~~iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r 128 (129)
T TIGR01951 66 KD-WSLERLDPVDRAILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAK 128 (129)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhh
Confidence 63 999999999999999999999999 699999999999999999999999999999999986
No 19
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.93 E-value=7.1e-26 Score=201.12 Aligned_cols=123 Identities=34% Similarity=0.502 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009769 60 HRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139 (526)
Q Consensus 60 aR~~A~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~ 139 (526)
+|+.|+|+||+++..+.+.+.+.... ..... ++.|++|+++|++|+++++++||++|+++++
T Consensus 3 ~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~- 64 (126)
T cd00620 3 ARSTAAEVLRDVLQRGASLNAVLSAL----------------QKKDK-SDRDRGLATELVYGTLRWLALLDWIINPLLK- 64 (126)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHH----------------HHhcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-
Confidence 69999999999999888877766542 11122 6789999999999999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 009769 140 EKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (526)
Q Consensus 140 ~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~ 201 (526)
|++.++++++++|||+|+|||+|+++|++++|||+|++||+++++++++|||||||++.|+
T Consensus 65 -~~~~~~~~~~~~iLr~a~~el~~~~~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 65 -KPDVGKDPDVRNLLRLGLYQLLYLDVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred -CCccccCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhcc
Confidence 5567899999999999999999999999999999999999999999999999999999874
No 20
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.89 E-value=6.6e-23 Score=182.80 Aligned_cols=124 Identities=24% Similarity=0.337 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhC-CCchHHHhhcCCCCCCCcchhhhhhcccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009769 60 HRAVSAVRLMRIQFG-GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (526)
Q Consensus 60 aR~~A~q~Ly~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (526)
+|+.|+++||+++.. +...+.+.... . ...+++.|++|+++|++||++++..||++|+++++
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~ 64 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSAL----------------E-KLQLAKKDRPFALELVYGVLRNLPELDDIISPLLK 64 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----------------H-HcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 599999999999887 77776666442 1 12467789999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 009769 139 DEKTFSSMEPLLLQILRIGFYEIVKLD--MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (526)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~--~p~~~~inEaV~lak~~~~~~~~~fVNaVL~~~~~~ 201 (526)
+ |+++|++.+++.|||++.+|+.++. +|++++|||+|++||++++++.++|||||||++.++
T Consensus 65 ~-~~~~r~~~~~~~il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r~ 128 (129)
T cd00447 65 K-WLLDRLDKVDRAILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred C-CChhhhhHHHHHHHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhhc
Confidence 6 9999999999999999999998864 899999999999999999999999999999999874
No 21
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.85 E-value=3.7e-21 Score=181.99 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=89.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCc
Q 009769 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188 (526)
Q Consensus 109 ~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~ 188 (526)
+.+++|++++|+||++++..||++|++++++ |++.++++++++|||+|+|||+|+++|++++|||||++||+|++++++
T Consensus 110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~-W~l~rL~~idr~ILRlavyELl~l~~P~~vaINEAVeLAK~~~~~~~~ 188 (207)
T PRK09634 110 EEVREYALERIGAVIRNRKEIDQLLDTVMVG-WQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYSDEQGR 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-ccccCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhCCCccc
Confidence 7899999999999999999999999999976 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhc
Q 009769 189 NLVNGILRKLVLLK 202 (526)
Q Consensus 189 ~fVNaVL~~~~~~~ 202 (526)
+|||||||++.+..
T Consensus 189 ~FVNaVLrri~r~~ 202 (207)
T PRK09634 189 RFINGVLRRLQDAL 202 (207)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999864
No 22
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.72 E-value=1.7e-16 Score=166.68 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=126.5
Q ss_pred ccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC-cc
Q 009769 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (526)
Q Consensus 308 ~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-~~ 386 (526)
..+++|.|..|.....++..+. +|.+|||+|||+|+++++++. .+..+|+++|+|+.+++.+++|++.+|+. .+
T Consensus 198 ~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~ 272 (396)
T PRK15128 198 GGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSK 272 (396)
T ss_pred cccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc
Confidence 4578999999988887777654 478999999999999987664 45669999999999999999999999986 35
Q ss_pred EEEEcCccccccccC---CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 387 IRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 387 v~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
++++++|+.++.... .++||.|++|||+... +...+......+..++..+.++|+|||.|++++
T Consensus 273 v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 273 AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 899999998875321 3579999999998431 123444455567788999999999999999999
Q ss_pred CC--CChhhhHHHHHHHHHh-CCCCeEec
Q 009769 464 CS--IDPEENEERVEAFLLR-HPEFSIDP 489 (526)
Q Consensus 464 cs--~~~~Ene~vv~~~l~~-~~~~~~~~ 489 (526)
|| +..++-.+.+.+.... ...+++..
T Consensus 340 cs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 340 CSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 99 4444555555544433 33455544
No 23
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.71 E-value=9.7e-17 Score=166.39 Aligned_cols=164 Identities=23% Similarity=0.245 Sum_probs=131.4
Q ss_pred ccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC-cc
Q 009769 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (526)
Q Consensus 308 ~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-~~ 386 (526)
...++|.|..|..+...+...+. |++|||+||.||++++++|. ++..+||+||+|...++++++|++.+|++ .+
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 35689999999999998888764 99999999999999999886 46669999999999999999999999985 45
Q ss_pred EEEEcCccccccccC---CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 387 IRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 387 v~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+.++++|++++.... +.+||+|++|||..+ +.+ .......+.+..++..+.++|+|||+++.||
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~-----r~k--------~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA-----RSK--------KQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCcccc-----cCc--------ccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 789999999987654 459999999999843 332 3445667778899999999999999999999
Q ss_pred CCCChh--hhHHHHHH-HHHhCCCCeEec
Q 009769 464 CSIDPE--ENEERVEA-FLLRHPEFSIDP 489 (526)
Q Consensus 464 cs~~~~--Ene~vv~~-~l~~~~~~~~~~ 489 (526)
|+-+-. +-.+.+.. +.......++..
T Consensus 337 ~~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 337 CSRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred cCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence 995543 33344433 333444555543
No 24
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.66 E-value=4e-16 Score=155.99 Aligned_cols=142 Identities=27% Similarity=0.364 Sum_probs=107.7
Q ss_pred ccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC-cc
Q 009769 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (526)
Q Consensus 308 ~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-~~ 386 (526)
...+.|+|..|.+...++.... .|.+|||+||.+|+++++++. ++..+|++||.|...++.+++|++.+|++ ..
T Consensus 101 ~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 101 DGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 4578999999999999988875 388999999999999998775 55668999999999999999999999986 56
Q ss_pred EEEEcCcccccccc--CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 387 IRTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 387 v~~~~~D~~~~~~~--~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++++..|++++... ..++||+|++|||...-|. | + +.+.+.+++..+.++|+|||.|+.+||
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------~-----~---~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------F-----D---LERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------C-----E---HHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------H-----H---HHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 89999999886542 2468999999999853221 1 1 134567889999999999999999999
Q ss_pred CCChhh
Q 009769 465 SIDPEE 470 (526)
Q Consensus 465 s~~~~E 470 (526)
|.+-..
T Consensus 240 s~~i~~ 245 (286)
T PF10672_consen 240 SHHISP 245 (286)
T ss_dssp -TTS-H
T ss_pred CcccCH
Confidence 966544
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.62 E-value=1.4e-14 Score=146.26 Aligned_cols=128 Identities=21% Similarity=0.256 Sum_probs=98.6
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+++.++++++++|+.+... ..+||.|++|
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEEC
Confidence 445799999999999999999874 3579999999999999999999999997779999999876432 3579999999
Q ss_pred CCCCCCccccCCc-hhhccCCHHHH----HHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 412 APCSGLGVLSKRA-DLRWNRRLEDM----EELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 412 ~Pcsg~G~l~~~p-~~~~~~~~~~l----~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
||+...+.+...+ +.+ ..+... ......++.++..+.++|+|||++++-+.
T Consensus 197 PPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9997655443222 211 111110 12345678899999999999999986554
No 26
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.60 E-value=7.1e-15 Score=165.52 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=118.5
Q ss_pred cccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC-ccE
Q 009769 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVI 387 (526)
Q Consensus 309 ~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-~~v 387 (526)
..+.|.|..|.....++..+. .|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|+. +++
T Consensus 517 ~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v 591 (702)
T PRK11783 517 YLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQH 591 (702)
T ss_pred CCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccce
Confidence 457899999988888887765 3789999999999999999974 4568999999999999999999999986 569
Q ss_pred EEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 388 ~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
+++++|+.++......+||+|++|||+.+.+- ...++....+.+..++..+.++|+|||.+++++|+-.
T Consensus 592 ~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 592 RLIQADCLAWLKEAREQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred EEEEccHHHHHHHcCCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999998876433568999999999965321 1112334455677889999999999999999999865
Q ss_pred hhh
Q 009769 468 PEE 470 (526)
Q Consensus 468 ~~E 470 (526)
...
T Consensus 661 ~~~ 663 (702)
T PRK11783 661 FKM 663 (702)
T ss_pred CCh
Confidence 543
No 27
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.60 E-value=2.1e-14 Score=133.03 Aligned_cols=142 Identities=24% Similarity=0.315 Sum_probs=114.4
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
...+-..+....|.+.||+.++|+|||+|+.++.++ +..+.++|+|+|.++++++..++|++++|++| ++++.+|+.+
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~ 95 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPE 95 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchH
Confidence 345566777788899999999999999999999999 66889999999999999999999999999886 8999999988
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHH
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 476 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~ 476 (526)
.....+ .||.|++. |.|. ...+|+.++..|||||+||.... ..|++....
T Consensus 96 ~L~~~~-~~daiFIG----Gg~~----------------------i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~ 145 (187)
T COG2242 96 ALPDLP-SPDAIFIG----GGGN----------------------IEEILEAAWERLKPGGRLVANAI---TLETLAKAL 145 (187)
T ss_pred hhcCCC-CCCEEEEC----CCCC----------------------HHHHHHHHHHHcCcCCeEEEEee---cHHHHHHHH
Confidence 776544 79999973 3332 23579999999999999996543 346666666
Q ss_pred HHHHhCCCCeEecC
Q 009769 477 AFLLRHPEFSIDPA 490 (526)
Q Consensus 477 ~~l~~~~~~~~~~~ 490 (526)
..++++..++++.+
T Consensus 146 ~~~~~~g~~ei~~v 159 (187)
T COG2242 146 EALEQLGGREIVQV 159 (187)
T ss_pred HHHHHcCCceEEEE
Confidence 77777654355443
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=5.7e-15 Score=127.52 Aligned_cols=112 Identities=25% Similarity=0.330 Sum_probs=88.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...+...+++++++|+ ........+||.|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 68899999999999999999953 46899999999999999999998888877899999999 33333346799999865
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
.+.... . .. ..+.++|+.+.+.|+|||++++.+|
T Consensus 79 -~~~~~~-----------~-----~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 -FTLHFL-----------L-----PL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -GSGGGC-----------C-----HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -Cccccc-----------c-----ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 211001 0 01 3345679999999999999999998
No 29
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=9.3e-14 Score=139.53 Aligned_cols=231 Identities=17% Similarity=0.155 Sum_probs=142.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHcCCCCCeEEEEcCCCCCCHHHH---HHHHh--cCCCCceeccCCCceEEeeCCcchhh
Q 009769 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLN--LLKVPHELSLHLDEFIRVKTGLQNVI 305 (526)
Q Consensus 231 ~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~lRvn~~k~~~~~~~---~~~L~--~~g~~~~~~~~~~~~~~~~~~~~~~~ 305 (526)
.|..+.|.+ +..+++.++......++..++.|..+..+.++. .+.+. ..+.+... +-+. ....
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---i~g~-------~~f~ 76 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQY---ILGE-------AEFW 76 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHH---Hcee-------ceEc
Confidence 566666665 777888888877777777888887654454433 11111 12333211 0000 0000
Q ss_pred ccc-cccccceeeccchHHHHHHhc---CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc
Q 009769 306 QAG-LLKEGLCAVQDESAGLVVAVV---DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (526)
Q Consensus 306 ~~~-~~~~G~~~iQd~~s~l~~~~l---~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~ 381 (526)
... ....+.+....++..++..++ ...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++|++ .
T Consensus 77 ~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~ 154 (275)
T PRK09328 77 GLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-H 154 (275)
T ss_pred CcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-h
Confidence 000 011233433333433333332 34567899999999999999999875 46899999999999999999998 3
Q ss_pred CCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCcccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHHccCcCCC
Q 009769 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS-KRADLRWNRRLEDM---EELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 382 g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~-~~p~~~~~~~~~~l---~~l~~~q~~lL~~a~~~LkpGG 457 (526)
+...++.++++|+..... ..+||+|++||||...+.+. ..+++++......+ ......+..++.++.++|+|||
T Consensus 155 ~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 155 GLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred CCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 333458999999865432 36899999999997765543 22333321111111 1234567889999999999999
Q ss_pred EEEEEeCCCChhhhHHHHHHHHHh
Q 009769 458 VLVYSTCSIDPEENEERVEAFLLR 481 (526)
Q Consensus 458 ~lvystcs~~~~Ene~vv~~~l~~ 481 (526)
.+++.+. .. .. +.+..++..
T Consensus 233 ~l~~e~g-~~--~~-~~~~~~l~~ 252 (275)
T PRK09328 233 WLLLEIG-YD--QG-EAVRALLAA 252 (275)
T ss_pred EEEEEEC-ch--HH-HHHHHHHHh
Confidence 9997542 22 22 235555654
No 30
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=7.4e-15 Score=127.89 Aligned_cols=116 Identities=23% Similarity=0.312 Sum_probs=92.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCcEEEEcC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 412 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~-~~~~~fD~Vl~D~ 412 (526)
|.+|||+|||+|..++++++.. ..+++++|+++..++.++.++..+++..+++++++|+.+... ....+||.|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 5689999999999999999873 689999999999999999999999997779999999988763 2357899999999
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
|+........ .....+..+++.+.++|+|||.+++.+|.
T Consensus 79 P~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9964311110 01114567899999999999999998873
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=2e-14 Score=139.90 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=116.6
Q ss_pred hHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009769 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~ 400 (526)
.+.|++....+....+|||+|||+|..++.+|++.. ..+|++||+++.+.+.|++|++.+++..+++++++|+.++.+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 467888888877789999999999999999999855 4899999999999999999999999999999999999998765
Q ss_pred CC-CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHH
Q 009769 401 ST-VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 479 (526)
Q Consensus 401 ~~-~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 479 (526)
.. .+||.|++|||+...|.- .+++-..... .....-...++++.|.++|||||++.+ +++.|.-.-+...+
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~A---r~e~~~~le~~i~~a~~~lk~~G~l~~----V~r~erl~ei~~~l 182 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSR-LNENPLRAIA---RHEITLDLEDLIRAAAKLLKPGGRLAF----VHRPERLAEIIELL 182 (248)
T ss_pred ccccccCEEEeCCCCCCCccc-cCcChhhhhh---hhhhcCCHHHHHHHHHHHccCCCEEEE----EecHHHHHHHHHHH
Confidence 43 459999999999776664 2221111000 001111234679999999999999976 46666654455555
Q ss_pred HhC
Q 009769 480 LRH 482 (526)
Q Consensus 480 ~~~ 482 (526)
.++
T Consensus 183 ~~~ 185 (248)
T COG4123 183 KSY 185 (248)
T ss_pred Hhc
Confidence 553
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=7.9e-15 Score=137.04 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=100.1
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
|.++.+++..+...++.+|||+|||+|..++.+++. .+..+|+++|+++.+++.+++|++.+++.+ +++++.|..+..
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~ 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc
Confidence 667778887777667889999999999999999987 446689999999999999999999999988 999999998765
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
. ..+||.|++|||....+ ......+.++++.+.++|||||.+++..-+
T Consensus 95 ~--~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 95 P--DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp C--TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred c--ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 4 47899999999963211 112234567899999999999999764433
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=7.8e-14 Score=138.36 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=104.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCcEEEEcC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDA 412 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~fD~Vl~D~ 412 (526)
+.+|||+|||+|.+++.++...+ ..+|+++|+|+.+++.+++|++.++. +++++|+.+.... ..++||.|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999999998754 46899999999999999999998763 5788898764321 235799999999
Q ss_pred CCCCCccccC-CchhhccCCHHHH---HHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 413 PCSGLGVLSK-RADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 413 Pcsg~G~l~~-~p~~~~~~~~~~l---~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
||...+.+.+ .|+.++......+ ....+.++.++..+.++|||||.+++.+.. ...++ +...+.++
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~-v~~~l~~~ 231 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPL-AVEAFARA 231 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHH-HHHHHHHC
Confidence 9987776544 4555544332323 245677899999999999999999987653 22233 44555543
No 34
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.53 E-value=2.2e-13 Score=130.47 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=105.1
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
.+...+....+.+.++++|||+|||+|.+++.++..+++.++|+++|+++.+++.+++|++.+++.++++++++|+.+..
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 34445555667888999999999999999999998877678999999999999999999999996445889999987754
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHH
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 478 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~ 478 (526)
......||.|+++... .. ...+++.+.+.|||||++++.+|.+ ++...+...
T Consensus 106 ~~~~~~~D~V~~~~~~------------------~~-------~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~ 157 (198)
T PRK00377 106 FTINEKFDRIFIGGGS------------------EK-------LKEIISASWEIIKKGGRIVIDAILL---ETVNNALSA 157 (198)
T ss_pred hhcCCCCCEEEECCCc------------------cc-------HHHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHH
Confidence 4334689999985321 01 1356899999999999999988754 333445556
Q ss_pred HHhC
Q 009769 479 LLRH 482 (526)
Q Consensus 479 l~~~ 482 (526)
+.++
T Consensus 158 l~~~ 161 (198)
T PRK00377 158 LENI 161 (198)
T ss_pred HHHc
Confidence 6554
No 35
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.53 E-value=9.6e-14 Score=143.29 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=102.9
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~ 401 (526)
+..++.+.++++|++|||+|||+|++++.++.. ..+++|+|+++.+++.++.|++.+|+.+ +.++++|+.+++..
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~- 245 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS- 245 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc-
Confidence 444555667889999999999999999887653 4799999999999999999999999987 88899999886532
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
.+.||.|++||||........ .....++.++|+.+.+.|||||++++.+++..
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~-------------~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAG-------------DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCCCEEEECCCCcCcccccC-------------CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 468999999999953221110 12335577899999999999999999887643
No 36
>PRK14967 putative methyltransferase; Provisional
Probab=99.52 E-value=3.4e-13 Score=131.55 Aligned_cols=145 Identities=25% Similarity=0.384 Sum_probs=104.9
Q ss_pred ccceeeccchHHHHHHh--cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEE
Q 009769 312 EGLCAVQDESAGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~--l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~ 389 (526)
.|.+..|..+..+...+ +.+.++++|||+|||+|..+..++.. +..+|+++|+++.+++.+++|++.+++. +++
T Consensus 13 ~g~~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~ 88 (223)
T PRK14967 13 PGVYRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VDV 88 (223)
T ss_pred CCCcCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eEE
Confidence 45555665544333222 24677899999999999999998874 3469999999999999999999998874 788
Q ss_pred EcCccccccccCCCCCcEEEEcCCCCC---CccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 390 IHADLRTFADNSTVKCDKVLLDAPCSG---LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 390 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg---~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
+++|+..... ...||.|++|||+.. .+...+.++..|...... ...+..++..+.++|||||++++...+.
T Consensus 89 ~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 89 RRGDWARAVE--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EECchhhhcc--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 8899876432 368999999998742 233334455555433222 2345678999999999999999754444
No 37
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.8e-13 Score=129.25 Aligned_cols=126 Identities=27% Similarity=0.439 Sum_probs=113.0
Q ss_pred ccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEE
Q 009769 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (526)
Q Consensus 310 ~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~ 389 (526)
|+.+--++-.+.+.+++..+++.||++|||.|+|+|..|..+|..+++.|+|+.+|+.++.++.|++|++.+|+.+++++
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 77777788888999999999999999999999999999999999889999999999999999999999999999988999
Q ss_pred EcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE-EEeC
Q 009769 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTC 464 (526)
Q Consensus 390 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv-ystc 464 (526)
..+|+.+.... ..||.|++|.|- .| +.|+++...|||||.++ |+.|
T Consensus 151 ~~~Dv~~~~~~--~~vDav~LDmp~------------PW---------------~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 151 KLGDVREGIDE--EDVDAVFLDLPD------------PW---------------NVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred Eeccccccccc--cccCEEEEcCCC------------hH---------------HHHHHHHHHhCCCcEEEEEcCC
Confidence 99999887644 489999999997 34 36999999999999876 5555
No 38
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=4.1e-13 Score=126.40 Aligned_cols=158 Identities=21% Similarity=0.202 Sum_probs=111.2
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
...+.++...+...++.+|||+|||+|..+..++.. . .+|+++|+++.+++.+++|++.+++. ++++++|+.+..
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGK-G--KCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc-C--CEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc
Confidence 444566666666667789999999999999999885 2 38999999999999999999988873 788899987654
Q ss_pred ccCCCCCcEEEEcCCCCCCc-cccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHH
Q 009769 399 DNSTVKCDKVLLDAPCSGLG-VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G-~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 477 (526)
..+||.|+++||+.... ....++...+.... .......+..++.++.++|||||.+++.+++... ...+..
T Consensus 80 ---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~---~~~~~~ 151 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDG--GKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG---EPDTFD 151 (179)
T ss_pred ---CCcccEEEECCCCCCCcchhcccchhhhhhhc--CCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC---hHHHHH
Confidence 25899999999984322 11111111111000 0011234678899999999999999988876542 344556
Q ss_pred HHHhCCCCeEecC
Q 009769 478 FLLRHPEFSIDPA 490 (526)
Q Consensus 478 ~l~~~~~~~~~~~ 490 (526)
++++. +|....+
T Consensus 152 ~l~~~-gf~~~~~ 163 (179)
T TIGR00537 152 KLDER-GFRYEIV 163 (179)
T ss_pred HHHhC-CCeEEEE
Confidence 66665 5666543
No 39
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2e-13 Score=132.98 Aligned_cols=115 Identities=23% Similarity=0.430 Sum_probs=94.6
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~ 403 (526)
.++..+...+|.+|||+|||||-.++.+++..+ .++|+++|+|+.||+.+++.+...|..+ ++++++|+.+++ ..+.
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP-f~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP-FPDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC-CCCC
Confidence 344555666899999999999999999999876 8999999999999999999999999888 999999999987 4578
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.||.|.+ +.|+ +.-+| + ...|++++++|||||+++...
T Consensus 119 sFD~vt~-----~fgl-rnv~d---------~-------~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTI-----SFGL-RNVTD---------I-------DKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEe-----eehh-hcCCC---------H-------HHHHHHHHHhhcCCeEEEEEE
Confidence 9999975 2333 22221 1 245999999999999888543
No 40
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=3.9e-13 Score=137.08 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=95.5
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.+++.++++++++|+.+... ..+||+|++|||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence 689999999999999999874 4679999999999999999999999987779999999876442 2579999999999
Q ss_pred CCCccccCC-chhhccCCHHH----HHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 415 SGLGVLSKR-ADLRWNRRLED----MEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 415 sg~G~l~~~-p~~~~~~~~~~----l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.+.+.+... ++.++ .+.. -......++.++..+.++|+|||.+++.
T Consensus 212 i~~~~~~~l~~~~~~--eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRH--EPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhcc--CccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 876543321 12111 1110 0112356778999999999999999864
No 41
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=3.9e-13 Score=130.44 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=97.0
Q ss_pred cceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC
Q 009769 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (526)
Q Consensus 313 G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~ 392 (526)
|....+......+...+.++++++|||+|||+|..+..+++..+..++|+++|+++.+++.++++++++|+++ ++++++
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~ 135 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVG 135 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEEC
Confidence 4344444445566677888999999999999999999999986666889999999999999999999999975 899999
Q ss_pred ccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 393 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 393 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
|+...... ...||+|++++++.. +...+.+.|+|||+|++..
T Consensus 136 d~~~~~~~-~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 136 DGTQGWEP-LAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCcc-cCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEEE
Confidence 99765432 357999999977631 2345677899999999653
No 42
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.49 E-value=1.7e-13 Score=134.59 Aligned_cols=124 Identities=21% Similarity=0.408 Sum_probs=96.9
Q ss_pred ceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCc
Q 009769 314 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (526)
Q Consensus 314 ~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D 393 (526)
--++-.+.+.++...+++.||++||+.|+|+|.+|.++++.+++.|+|+.+|+++++++.|++|++.+|+.+++++.+.|
T Consensus 21 tQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D 100 (247)
T PF08704_consen 21 TQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD 100 (247)
T ss_dssp S----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-
T ss_pred cceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc
Confidence 33445666778888999999999999999999999999999999999999999999999999999999998779999999
Q ss_pred ccccc--ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccC-cCCCEEE-EEeC
Q 009769 394 LRTFA--DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV-KPGGVLV-YSTC 464 (526)
Q Consensus 394 ~~~~~--~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~L-kpGG~lv-ystc 464 (526)
+..-. ......||.|++|.|. .|. .+.++.+.| |+||+++ |+.|
T Consensus 101 v~~~g~~~~~~~~~DavfLDlp~------------Pw~---------------~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 101 VCEEGFDEELESDFDAVFLDLPD------------PWE---------------AIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp GGCG--STT-TTSEEEEEEESSS------------GGG---------------GHHHHHHHE-EEEEEEEEEESS
T ss_pred eecccccccccCcccEEEEeCCC------------HHH---------------HHHHHHHHHhcCCceEEEECCC
Confidence 86422 1224679999999997 343 488899999 8999876 5555
No 43
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.48 E-value=1.1e-12 Score=132.60 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=96.6
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
+.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+.+... ..+||+|++|||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPP 191 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCC
Confidence 36899999999999999998753 579999999999999999999999997679999999876432 237999999999
Q ss_pred CCCCccccCCchhhccCCHHHH---HHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 414 CSGLGVLSKRADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l---~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
+.....+...++.........+ ......++.++..+.++|+|||.+++.++.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 9654332211221110000000 122346788999999999999999976654
No 44
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.48 E-value=3.9e-13 Score=137.95 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=103.4
Q ss_pred hcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcE
Q 009769 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
.+...++.+|||+|||+|.+++.+|+. ..+|+|+|+++.+++.+++|++.+|+.+ ++++++|+.++.......||.
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCeE
Confidence 333345789999999999999999984 4799999999999999999999999964 999999998765433357999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeE
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 487 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 487 (526)
|++|||+.|.+- . ++ .....++| +.++|++|....--. -++..+++++
T Consensus 244 Vv~dPPr~G~~~--------------~----------~~-~~l~~~~~-~~ivyvsc~p~t~~r------d~~~l~~y~~ 291 (315)
T PRK03522 244 VLVNPPRRGIGK--------------E----------LC-DYLSQMAP-RFILYSSCNAQTMAK------DLAHLPGYRI 291 (315)
T ss_pred EEECCCCCCccH--------------H----------HH-HHHHHcCC-CeEEEEECCcccchh------HHhhccCcEE
Confidence 999999976432 1 11 11222455 479999997544221 1222246776
Q ss_pred ecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEe
Q 009769 488 DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 524 (526)
Q Consensus 488 ~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 524 (526)
..+.+ +.++||.+..+- ++.|+|
T Consensus 292 ~~~~~------------~DmFP~T~HvE~--v~~l~r 314 (315)
T PRK03522 292 ERVQL------------FDMFPHTAHYEV--LTLLVR 314 (315)
T ss_pred EEEEE------------eccCCCCCeEEE--EEEEEc
Confidence 65421 345787776664 555554
No 45
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=2.7e-12 Score=125.16 Aligned_cols=114 Identities=24% Similarity=0.339 Sum_probs=86.7
Q ss_pred hHHHHHHh--cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 321 SAGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 321 ~s~l~~~~--l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
++.++..+ +++++|.+|||+|||+|.++.+++..++ .++|+|+|+++.+++.+.++++.. .| +.++.+|+....
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~ 133 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPE 133 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcc
Confidence 33444433 7788999999999999999999999875 689999999999999888887764 34 788889987531
Q ss_pred c--cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 399 D--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 399 ~--~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
. .....||.|++|.+. | |. ...+|.++.++|||||.++.+
T Consensus 134 ~~~~l~~~~D~i~~d~~~---------p---~~------------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 134 RYAHVVEKVDVIYQDVAQ---------P---NQ------------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhhhccccCCEEEECCCC---------h---hH------------HHHHHHHHHHhcCCCcEEEEE
Confidence 1 123569999987542 1 10 123588999999999999984
No 46
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.46 E-value=1.9e-12 Score=123.70 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=101.9
Q ss_pred ccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc
Q 009769 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~ 391 (526)
.|....|.+...++...+.++++++|||+|||+|..+..++.. .+.++|+++|+++.+++.+++|++++++.+ +++++
T Consensus 19 ~~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~ 96 (196)
T PRK07402 19 PGIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIE 96 (196)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence 3556778888888888888889999999999999999999876 346899999999999999999999999865 89999
Q ss_pred CccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 392 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
+|+.+........+|.|++|... . ...++..+.+.|+|||.+++.+++.
T Consensus 97 ~d~~~~~~~~~~~~d~v~~~~~~-------------------~-------~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 97 GSAPECLAQLAPAPDRVCIEGGR-------------------P-------IKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CchHHHHhhCCCCCCEEEEECCc-------------------C-------HHHHHHHHHHhcCCCeEEEEEeecH
Confidence 99865332223457888776321 0 1256899999999999999888763
No 47
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=126.14 Aligned_cols=116 Identities=21% Similarity=0.330 Sum_probs=93.6
Q ss_pred ccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009769 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (526)
Q Consensus 318 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~ 397 (526)
+......+...+.++++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++.+++.++++++++|+.+.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 33334455667788899999999999999999999987667899999999999999999999999876789999999765
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
... ...||.|+++.... .+.....+.|+|||+|++.
T Consensus 137 ~~~-~~~fD~Ii~~~~~~----------------------------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 137 LEK-HAPFDAIIVTAAAS----------------------------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred Ccc-CCCccEEEEccCcc----------------------------hhhHHHHHhcCcCcEEEEE
Confidence 432 35899999876541 1134567889999999864
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.44 E-value=8.4e-13 Score=120.84 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=91.0
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
+.+.+|||+|||+|..+..++....+.++++++|+|+.+++.++++++..++++ ++++++|+.++......+||.|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhccccccCCCeeEEEEc
Confidence 467899999999999999999666667899999999999999999999999984 9999999999542212689999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.++... .+ ...+++.+.++|++||.++.+.+.
T Consensus 81 ~~l~~~---------------~~-------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF---------------PD-------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT---------------SH-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc---------------cC-------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 766210 01 235689999999999999988776
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.44 E-value=2.7e-12 Score=112.37 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=89.6
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~ 404 (526)
+...+.+.++.+|||+|||+|..+..+++.++ .++++++|+++.+++.++++++.+++.+ ++++.+|+.........+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCC
Confidence 44455677788999999999999999998764 4899999999999999999999998875 788888876533323468
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
||.|+++.+- . .+.++++.+.+.|||||.++...
T Consensus 89 ~D~v~~~~~~------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 89 PDRVFIGGSG------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCEEEECCcc------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999985421 0 12367999999999999999654
No 50
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.43 E-value=3.5e-12 Score=133.12 Aligned_cols=164 Identities=20% Similarity=0.158 Sum_probs=111.7
Q ss_pred ccceeeccchHHHHHHhcC-CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEE
Q 009769 312 EGLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~-~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~ 390 (526)
.|.++...++..++..++. ++++.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.++. +++++
T Consensus 229 p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi 305 (423)
T PRK14966 229 PNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFA 305 (423)
T ss_pred CCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEE
Confidence 4555555666666665543 3466799999999999999998763 468999999999999999999999886 38899
Q ss_pred cCccccccccCCCCCcEEEEcCCCCCCccccCC-chhhccC--CHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR-ADLRWNR--RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 391 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~-p~~~~~~--~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
++|+.+.......+||.|++|||+...+..... ++.++.. ....-......++.++..+.+.|+|||.+++.. .
T Consensus 306 ~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G 382 (423)
T PRK14966 306 HGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---G 382 (423)
T ss_pred EcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---C
Confidence 999876421123579999999999654432111 1111100 000111234557789999999999999987533 2
Q ss_pred hhhhHHHHHHHHHhC
Q 009769 468 PEENEERVEAFLLRH 482 (526)
Q Consensus 468 ~~Ene~vv~~~l~~~ 482 (526)
... .+.+..++.++
T Consensus 383 ~~Q-~e~V~~ll~~~ 396 (423)
T PRK14966 383 FDQ-GAAVRGVLAEN 396 (423)
T ss_pred ccH-HHHHHHHHHHC
Confidence 222 23455666654
No 51
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.43 E-value=2.4e-13 Score=133.17 Aligned_cols=118 Identities=23% Similarity=0.371 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~ 403 (526)
.++..+.+.+|.+|||+|||||-.+..+++..++.++|+++|+|+.|++.+++.++..+..+ |+++++|+.+++- .++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp~-~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLPF-PDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB--S--TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhcC-CCC
Confidence 44555677889999999999999999999887778999999999999999999999988874 9999999998763 357
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.||.|++ +.|+ +.-|+ +...|.++.++|||||++++...+
T Consensus 116 sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFPD----------------RERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHcCCCeEEEEeecc
Confidence 8999984 3343 22222 234689999999999999875543
No 52
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=1.9e-12 Score=125.34 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=95.7
Q ss_pred cceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC
Q 009769 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (526)
Q Consensus 313 G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~ 392 (526)
|....+......+...+++++|++|||+|||+|+.+..+++.++..++|+++|+++.+++.++++++.+|+.+ ++++++
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence 4445556666677778889999999999999999999999987767899999999999999999999999875 899999
Q ss_pred ccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 393 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 393 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|+..... ....||+|+++.... .+.....+.|||||+|+..
T Consensus 135 d~~~~~~-~~~~fD~I~~~~~~~----------------------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DGTLGYE-ENAPYDRIYVTAAGP----------------------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcccCCC-cCCCcCEEEECCCcc----------------------------cchHHHHHhhCCCcEEEEE
Confidence 9876542 236799999864321 1123445679999999853
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=4.1e-12 Score=120.45 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=102.8
Q ss_pred eeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccc
Q 009769 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (526)
Q Consensus 316 ~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~ 395 (526)
..++.....+...+.+.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++|++++++.+ ++++++|+.
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~ 91 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAP 91 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCch
Confidence 4445556666677788889999999999999999999874 46899999999999999999999998864 889988874
Q ss_pred cccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHH
Q 009769 396 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 475 (526)
Q Consensus 396 ~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv 475 (526)
.. ....||.|+++... + .+ ..+++.+.+.|+|||++++.... .++.+.+
T Consensus 92 ~~---~~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~Lk~gG~lv~~~~~---~~~~~~~ 140 (187)
T PRK08287 92 IE---LPGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHLHPGGRLVLTFIL---LENLHSA 140 (187)
T ss_pred hh---cCcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhcCCCeEEEEEEec---HhhHHHH
Confidence 32 23579999975321 0 01 24588899999999999976432 3445556
Q ss_pred HHHHHhCC
Q 009769 476 EAFLLRHP 483 (526)
Q Consensus 476 ~~~l~~~~ 483 (526)
..+++++.
T Consensus 141 ~~~l~~~g 148 (187)
T PRK08287 141 LAHLEKCG 148 (187)
T ss_pred HHHHHHCC
Confidence 67777653
No 54
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.2e-12 Score=128.57 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=109.7
Q ss_pred cccceeeccchHHHHHHhc-CCCCCC-EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEE
Q 009769 311 KEGLCAVQDESAGLVVAVV-DPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388 (526)
Q Consensus 311 ~~G~~~iQd~~s~l~~~~l-~~~~g~-~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~ 388 (526)
.++.++...++..++-.++ ...... +|||+|||+|..++.++... +..+|+|+|+|+.+++.|++|++++|+. ++.
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~-~~~ 163 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLV-RVL 163 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCc-cEE
Confidence 3556666666666665533 222222 79999999999999999874 4579999999999999999999999984 466
Q ss_pred EEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHH-H---HHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLED-M---EELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 389 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~-l---~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++.+|.+.... ++||+|++|||+-........|+... ..+.. + ....+..+.|+..+..+|+|||.+++- +
T Consensus 164 ~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~-~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~ 238 (280)
T COG2890 164 VVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVR-YEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-I 238 (280)
T ss_pred EEeeecccccC---CceeEEEeCCCCCCCcccccChhhhc-cCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-E
Confidence 66667766543 48999999999943321111111100 00000 0 134567889999999999999988843 3
Q ss_pred CCChhhhHHHHHHHHHhCCCCeE
Q 009769 465 SIDPEENEERVEAFLLRHPEFSI 487 (526)
Q Consensus 465 s~~~~Ene~vv~~~l~~~~~~~~ 487 (526)
+... .+ .|.+.+.+...|..
T Consensus 239 g~~q--~~-~v~~~~~~~~~~~~ 258 (280)
T COG2890 239 GLTQ--GE-AVKALFEDTGFFEI 258 (280)
T ss_pred CCCc--HH-HHHHHHHhcCCceE
Confidence 3222 33 34445554432443
No 55
>PLN02476 O-methyltransferase
Probab=99.42 E-value=2.8e-12 Score=127.85 Aligned_cols=127 Identities=18% Similarity=0.217 Sum_probs=106.6
Q ss_pred eeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccc
Q 009769 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (526)
Q Consensus 316 ~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~ 395 (526)
.+.....+++..++...+..+|||+|+|+|..|+.+|..+++.|+|+++|.++++++.+++|+++.|+.++|+++.+|+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 44556667777777777788999999999999999999888789999999999999999999999999988999999998
Q ss_pred cccccC-----CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 396 TFADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 396 ~~~~~~-----~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
+..+.. .+.||.|++|++-. .+...++.+.++|+|||.+|+-.+-++
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K~-------------------------~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADKR-------------------------MYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCHH-------------------------HHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 865432 35899999998852 244668889999999999998766543
No 56
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.41 E-value=1.7e-12 Score=127.52 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=100.3
Q ss_pred chHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009769 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (526)
Q Consensus 320 ~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~ 399 (526)
...+++..++...++.+|||+|||+|..++.++..+.+.++|+++|+++++++.+++|++++|+.++++++.+|+.+..+
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 34555555666666789999999999999999998877899999999999999999999999998889999999987643
Q ss_pred cC-----CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 400 NS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 400 ~~-----~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
.. .++||.|++|++-. .+..+++.+.++|+|||.++...+-+
T Consensus 135 ~l~~~~~~~~fD~VfiDa~k~-------------------------~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDADKP-------------------------NYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHHhCCCCCCCCEEEECCCHH-------------------------HHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 21 35899999997641 13356888999999999999766543
No 57
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.39 E-value=3.5e-12 Score=131.84 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=101.3
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
|..+.++...+......+|||+|||+|..+..+++. .+..+|+++|+|+.+++.+++|++.+++. .+++..|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~ 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc
Confidence 667777777776555668999999999999999987 34579999999999999999999999886 356778876532
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhh
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 470 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~E 470 (526)
.++||.|++|||.- .|. ......-.+++..+.+.|||||.|++...++.+-+
T Consensus 259 ---~~~fDlIvsNPPFH-~g~----------------~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 ---KGRFDMIISNPPFH-DGI----------------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred ---CCCccEEEECCCcc-CCc----------------cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 46899999999972 111 00012234679999999999999999988887755
No 58
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.39 E-value=3.9e-12 Score=136.50 Aligned_cols=150 Identities=23% Similarity=0.324 Sum_probs=104.6
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---CC
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---ST 402 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---~~ 402 (526)
...+.+.++++|||+|||+|.+++.+|.. ..+|+|+|+|+.+++.+++|++.+++.+ ++++++|+.+.... ..
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~ 365 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWAL 365 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhc
Confidence 34456678899999999999999999986 3699999999999999999999999976 89999999765321 13
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
..||.|++|||++|.+ +++....+ ++|+ .++|.+|.... -..-+..+.+
T Consensus 366 ~~fD~Vi~dPPr~g~~-------------------------~~~~~l~~-~~~~-~ivyvSCnp~t--laRDl~~L~~-- 414 (443)
T PRK13168 366 GGFDKVLLDPPRAGAA-------------------------EVMQALAK-LGPK-RIVYVSCNPAT--LARDAGVLVE-- 414 (443)
T ss_pred CCCCEEEECcCCcChH-------------------------HHHHHHHh-cCCC-eEEEEEeChHH--hhccHHHHhh--
Confidence 5799999999997521 12332233 5664 57888895322 1111222222
Q ss_pred CCCeEecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEe
Q 009769 483 PEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 524 (526)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 524 (526)
.+|++..+.+ +.++||.+..+- +|.|+|
T Consensus 415 ~gY~l~~i~~------------~DmFP~T~HvE~--v~lL~r 442 (443)
T PRK13168 415 AGYRLKRAGM------------LDMFPHTGHVES--MALFER 442 (443)
T ss_pred CCcEEEEEEE------------eccCCCCCcEEE--EEEEEe
Confidence 3577765532 345687776665 566654
No 59
>PRK14968 putative methyltransferase; Provisional
Probab=99.39 E-value=4.8e-12 Score=119.40 Aligned_cols=157 Identities=21% Similarity=0.262 Sum_probs=108.3
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCcc-EEEEcCcccccccc
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADN 400 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~-v~~~~~D~~~~~~~ 400 (526)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++..+++.++ +.++++|+.+...
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~- 87 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR- 87 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-
Confidence 445555555678889999999999999999986 47999999999999999999999888654 7788888876432
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHH
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 480 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~ 480 (526)
...||.|++|+|+...+......+ .|......-.........+++++.++|||||.+++..++.... +.+..++.
T Consensus 88 -~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~---~~l~~~~~ 162 (188)
T PRK14968 88 -GDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE---DEVLEYLE 162 (188)
T ss_pred -ccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH---HHHHHHHH
Confidence 247999999999854321111000 0000000000012345678999999999999999887776533 23455666
Q ss_pred hCCCCeEe
Q 009769 481 RHPEFSID 488 (526)
Q Consensus 481 ~~~~~~~~ 488 (526)
+. +|++.
T Consensus 163 ~~-g~~~~ 169 (188)
T PRK14968 163 KL-GFEAE 169 (188)
T ss_pred HC-CCeee
Confidence 55 45544
No 60
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.8e-12 Score=125.78 Aligned_cols=128 Identities=22% Similarity=0.292 Sum_probs=105.0
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
|..|.++.+.+...++.+|||+|||.|..++.+++. .+..+|+-+|+|...++.+++|++.+++++. .++..|..+..
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc
Confidence 889999999998887779999999999999999998 4578999999999999999999999999874 67777876654
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~ 468 (526)
. ++||.|++|||.- .|. .....+-.+|+..|.+.|++||.|.+..-...+
T Consensus 222 ~---~kfd~IisNPPfh-~G~----------------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 222 E---GKFDLIISNPPFH-AGK----------------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred c---ccccEEEeCCCcc-CCc----------------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 3 4899999999983 111 112223347899999999999999877665444
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.38 E-value=6.3e-12 Score=119.03 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=89.2
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
+++.+|||+|||+|..++.++... +.++|+++|+++.+++.++++++.+++++ ++++++|+.++.. .++||.|+++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--~~~fDlV~~~ 119 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--EEKFDVVTSR 119 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--CCCccEEEEc
Confidence 348899999999999999999864 46899999999999999999999999987 9999999988654 4689999975
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChh
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 469 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~ 469 (526)
.- + . ...+++.++++|||||++++..+.....
T Consensus 120 ~~----~---------------~-------~~~~l~~~~~~LkpGG~lv~~~~~~~~~ 151 (187)
T PRK00107 120 AV----A---------------S-------LSDLVELCLPLLKPGGRFLALKGRDPEE 151 (187)
T ss_pred cc----c---------------C-------HHHHHHHHHHhcCCCeEEEEEeCCChHH
Confidence 20 0 0 1246899999999999999876664443
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.38 E-value=9e-12 Score=123.19 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=100.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.+.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++..++.+ +.++++|+.+.. ..++||.|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPL--PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccC--cCCceeEEEECC
Confidence 345899999999999999998754 5799999999999999999999999874 899999987643 246899999999
Q ss_pred CCCCCccccCC-chhhccCCHHHH---HHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 413 PCSGLGVLSKR-ADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 413 Pcsg~G~l~~~-p~~~~~~~~~~l---~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
|+...+.+... ++++.......+ .........++..+.++|+|||.+++.. +.. . .+.+..++.++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~--~-~~~~~~~l~~~ 232 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYD--Q-GEAVRALFEAA 232 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Ccc--H-HHHHHHHHHhC
Confidence 99865543221 111100000000 0112334678999999999999998753 222 2 23455666654
No 63
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.38 E-value=1.5e-12 Score=125.36 Aligned_cols=120 Identities=15% Similarity=0.218 Sum_probs=93.4
Q ss_pred ccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc
Q 009769 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~ 391 (526)
.|....|...-..+..++.++||++|||+|||+|..|..++.+.+..++|+++|+++..++.++++++.++..| +++++
T Consensus 51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~ 129 (209)
T PF01135_consen 51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVV 129 (209)
T ss_dssp TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEE
T ss_pred ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEE
Confidence 35555566566667788899999999999999999999999998888899999999999999999999999986 89999
Q ss_pred CccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 392 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+|....... ...||+|++.+.+.. +-....+.|++||+||.
T Consensus 130 gdg~~g~~~-~apfD~I~v~~a~~~----------------------------ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 130 GDGSEGWPE-EAPFDRIIVTAAVPE----------------------------IPEALLEQLKPGGRLVA 170 (209)
T ss_dssp S-GGGTTGG-G-SEEEEEESSBBSS------------------------------HHHHHTEEEEEEEEE
T ss_pred cchhhcccc-CCCcCEEEEeeccch----------------------------HHHHHHHhcCCCcEEEE
Confidence 998765432 367999999877631 12345677999999995
No 64
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=3.5e-12 Score=122.42 Aligned_cols=139 Identities=19% Similarity=0.329 Sum_probs=108.0
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCC-----cEEEEEcCChhHHHHHHHHHHHcCCCcc--EEEEcCccccc
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----GLVYAIDINKGRLRILNETAKLHQVNSV--IRTIHADLRTF 397 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~-----~~v~avD~s~~~l~~a~~n~~~~g~~~~--v~~~~~D~~~~ 397 (526)
.+..+++..|.+|||+|+|||-.++.+....... ++|+.+|+++++|..+++++++.++... +.++++|+.++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 4456788889999999999999999999987653 8999999999999999999988887644 88999999998
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHH
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 477 (526)
+ ..+..||...+ +.|+ +.-++ +. +-|++|+++|||||++. |--++.+|.+.+++
T Consensus 172 p-Fdd~s~D~yTi-----afGI-RN~th---------~~-------k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~ 225 (296)
T KOG1540|consen 172 P-FDDDSFDAYTI-----AFGI-RNVTH---------IQ-------KALREAYRVLKPGGRFS---CLEFSKVENEPLKW 225 (296)
T ss_pred C-CCCCcceeEEE-----ecce-ecCCC---------HH-------HHHHHHHHhcCCCcEEE---EEEccccccHHHHH
Confidence 7 45678888753 4454 22222 22 34899999999999988 77666666567888
Q ss_pred HHHhCCCCeEecC
Q 009769 478 FLLRHPEFSIDPA 490 (526)
Q Consensus 478 ~l~~~~~~~~~~~ 490 (526)
|.+.+. |.++|+
T Consensus 226 fy~~ys-f~Vlpv 237 (296)
T KOG1540|consen 226 FYDQYS-FDVLPV 237 (296)
T ss_pred HHHhhh-hhhhch
Confidence 877763 455544
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=7.9e-12 Score=130.19 Aligned_cols=127 Identities=15% Similarity=0.077 Sum_probs=99.1
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC--ccEEEEcCcccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRT 396 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~--~~v~~~~~D~~~ 396 (526)
|..+.++...+....+.+|||+|||+|..++.+++. .+..+|+++|+|+.+++.+++|++.++.. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 778888888887666679999999999999999987 45689999999999999999999988754 257888888865
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
... ..+||.|++|||+.-...+ +.. .-.+++..+.+.|+|||.|++..-.
T Consensus 293 ~~~--~~~fDlIlsNPPfh~~~~~----------~~~-------ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 293 GVE--PFRFNAVLCNPPFHQQHAL----------TDN-------VAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cCC--CCCEEEEEECcCcccCccC----------CHH-------HHHHHHHHHHHhcccCCEEEEEEec
Confidence 432 3579999999998321110 111 1235799999999999999877533
No 66
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.5e-12 Score=128.18 Aligned_cols=129 Identities=20% Similarity=0.269 Sum_probs=104.3
Q ss_pred ccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC-cccc
Q 009769 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT 396 (526)
Q Consensus 318 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~-D~~~ 396 (526)
-..-|..++.+..+++|+.|||.+||||++.+.+... +.+++|+|++..|++-++.|++.+++.+ ..+... |++.
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~ 257 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN 257 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence 3456777888888999999999999999999987654 5899999999999999999999999886 544554 9988
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++ .....||.|.+|||+.-+... ....+.+++.++|+.+.+.||+||++|+.+-
T Consensus 258 lp-l~~~~vdaIatDPPYGrst~~-------------~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LP-LRDNSVDAIATDPPYGRSTKI-------------KGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CC-CCCCccceEEecCCCCccccc-------------ccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 77 223369999999999422211 1122567788999999999999999998765
No 67
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.37 E-value=8.4e-12 Score=130.92 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEE
Q 009769 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl 409 (526)
...++.+|||+|||+|.+++.+|.. ..+|+|+|+++.+++.+++|++.+++++ ++++++|+.++.......||.|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhcCCCCCEEE
Confidence 3345689999999999999999964 4689999999999999999999999974 89999999876532224699999
Q ss_pred EcCCCCC
Q 009769 410 LDAPCSG 416 (526)
Q Consensus 410 ~D~Pcsg 416 (526)
+|||..|
T Consensus 306 ~DPPr~G 312 (374)
T TIGR02085 306 VNPPRRG 312 (374)
T ss_pred ECCCCCC
Confidence 9999864
No 68
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.36 E-value=1.2e-11 Score=116.49 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=94.6
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCc--------EEEEEcCChhHHHHHHHHHHHcCCCccEE
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG--------LVYAIDINKGRLRILNETAKLHQVNSVIR 388 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~--------~v~avD~s~~~l~~a~~n~~~~g~~~~v~ 388 (526)
++..-+..++.+.+.++|+.|||.+||+|++.+..+....+.. .++|+|+++.+++.+++|++.+|+.+.+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 3344566677778889999999999999999998887654333 39999999999999999999999998899
Q ss_pred EEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 389 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+.+.|+.++. ...+.+|.|++|||+. . ....-..+.+++..+++.+.+.+++ ..++.++
T Consensus 92 ~~~~D~~~l~-~~~~~~d~IvtnPPyG---~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELP-LPDGSVDAIVTNPPYG---R-----------RLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTT 150 (179)
T ss_dssp EEE--GGGGG-GTTSBSCEEEEE--ST---T-----------SHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEE
T ss_pred EEecchhhcc-cccCCCCEEEECcchh---h-----------hccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEE
Confidence 9999999987 2346899999999993 1 1123344577789999999999998 3444333
No 69
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.36 E-value=6.5e-12 Score=119.93 Aligned_cols=139 Identities=18% Similarity=0.212 Sum_probs=100.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCcEEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLL 410 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--~~~fD~Vl~ 410 (526)
.+.+|||+|||+|..+..+|... +...++|+|+++.+++.++++++..++.+ ++++++|+.++.... .+.||.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45699999999999999999874 56899999999999999999999999885 999999998764321 347999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEecC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 490 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~ 490 (526)
+.|.- |....+...++ .+..++..+.++|||||.|+++|- ....-+.+...+..++.|+....
T Consensus 94 ~~pdp------------w~k~~h~~~r~--~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 94 NFPDP------------WPKKRHNKRRI--TQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred ECCCc------------CCCCCcccccc--CCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEeccc
Confidence 87641 11110000011 135679999999999999987662 22222233455566777776543
No 70
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.36 E-value=4.4e-12 Score=131.92 Aligned_cols=150 Identities=22% Similarity=0.341 Sum_probs=93.5
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--- 400 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--- 400 (526)
.+..+++..++ .|||++||.|.+|+.+|.. ..+|+|+|+++.+++.|++|++.+++.| ++++++++.++...
T Consensus 188 ~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 188 QALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCC
T ss_pred HHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHh
Confidence 34556666666 8999999999999999975 5799999999999999999999999987 89998776544211
Q ss_pred ------------CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh
Q 009769 401 ------------STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468 (526)
Q Consensus 401 ------------~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~ 468 (526)
....+|.|++|||-+|.+- .+++.+.+ + .++||.+|....
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~------------------------~~~~~~~~-~---~~ivYvSCnP~t 314 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDE------------------------KVIELIKK-L---KRIVYVSCNPAT 314 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---TT-SCH------------------------HHHHHHHH-S---SEEEEEES-HHH
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcCCCCCchH------------------------HHHHHHhc-C---CeEEEEECCHHH
Confidence 1236899999999998553 12232222 2 489999996422
Q ss_pred hhhHHHHHHHHHhCCCCeEecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEec
Q 009769 469 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 525 (526)
Q Consensus 469 ~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 525 (526)
--.-+.. |.+ ++++..+. -+.++|+.+..+- ++.|+|+
T Consensus 315 --laRDl~~-L~~--~y~~~~v~------------~~DmFP~T~HvE~--v~lL~rk 352 (352)
T PF05958_consen 315 --LARDLKI-LKE--GYKLEKVQ------------PVDMFPQTHHVET--VALLERK 352 (352)
T ss_dssp --HHHHHHH-HHC--CEEEEEEE------------EE-SSTTSS--EE--EEEEEE-
T ss_pred --HHHHHHH-Hhh--cCEEEEEE------------EeecCCCCCcEEE--EEEEEeC
Confidence 1222222 332 67776542 1356798888887 7888774
No 71
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.36 E-value=9.2e-12 Score=117.50 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=94.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
+|.+|||+|||+|..+..++.. .+.++|+++|.|+.+++.++++++++++.+ ++++++|+.++. ..++||.|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~--~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQ--HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhcc--ccCCccEEEehh
Confidence 3789999999999999998865 456899999999999999999999999876 899999998863 246899999763
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC--CCCeEecC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH--PEFSIDPA 490 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~--~~~~~~~~ 490 (526)
. + + ...+++.+.++|+|||++++.. ....+..+....++. -++++++.
T Consensus 118 -~---~---------------~-------~~~~~~~~~~~LkpgG~lvi~~----~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 118 -L---A---------------S-------LNVLLELTLNLLKVGGYFLAYK----GKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred -h---h---------------C-------HHHHHHHHHHhcCCCCEEEEEc----CCCcHHHHHHHHHhhhhcCceEeec
Confidence 1 0 0 1235777899999999999653 334444555555553 35555554
Q ss_pred C
Q 009769 491 D 491 (526)
Q Consensus 491 ~ 491 (526)
.
T Consensus 168 ~ 168 (181)
T TIGR00138 168 P 168 (181)
T ss_pred c
Confidence 3
No 72
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.36 E-value=1.4e-11 Score=133.80 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=100.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
++.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++.++++++++|+.+... ..+||+|++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECC
Confidence 346899999999999999988753 579999999999999999999999987779999999865432 35799999999
Q ss_pred CCCCCcccc--------CCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 413 PCSGLGVLS--------KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 413 Pcsg~G~l~--------~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
|+....... ..|...+--. ......++.++..+.++|+|||.+++. +... .. +.+..++.++
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg----~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~--q~-~~v~~~~~~~ 284 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAE----EDGLQAYFIIAENAKQFLKPNGKIILE-IGFK--QE-EAVTQIFLDH 284 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCC----ccHHHHHHHHHHHHHHhccCCCEEEEE-ECCc--hH-HHHHHHHHhc
Confidence 996543311 1122111111 123355788999999999999999864 3332 22 2345555543
No 73
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=7.8e-12 Score=120.10 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=111.3
Q ss_pred ccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc
Q 009769 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~ 391 (526)
.|.-.+.++..+++..++...+..+||++|++.|..++.||..++.+++++++|+++++.+.|++|+++.|+.++|+++.
T Consensus 38 ~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 38 NGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred cCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 34444447777888888888888999999999999999999998878999999999999999999999999999888888
Q ss_pred -Ccccccccc-CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 392 -ADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 392 -~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
+|+.+.... ..+.||+||+|+..+ .|..+++.+.++|+|||.+|.-...+.
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDadK~-------------------------~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDADKA-------------------------DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeCChh-------------------------hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 598887654 468999999998763 244679999999999999998776655
No 74
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.35 E-value=8.8e-12 Score=120.60 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=93.5
Q ss_pred cceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC
Q 009769 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (526)
Q Consensus 313 G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~ 392 (526)
|....+......+...+.++++.+|||+|||+|..+..++... ++++++|+++.+++.++++++++++.+ ++++++
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~ 133 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHG 133 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEEC
Confidence 3344455555566677888899999999999999999888762 589999999999999999999999986 899999
Q ss_pred ccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 393 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 393 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
|+.+... ..+.||.|+++.++. .+.....+.|+|||+++....
T Consensus 134 d~~~~~~-~~~~fD~I~~~~~~~----------------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 134 DGWKGWP-AYAPFDRILVTAAAP----------------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcccCCC-cCCCcCEEEEccCch----------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 9865432 136799999987652 123445788999999997654
No 75
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.35 E-value=2.7e-11 Score=118.55 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=93.0
Q ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009769 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (526)
Q Consensus 323 ~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~ 402 (526)
..+...+.++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..++++ ++++++|+.++.. ..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPF-DD 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCC-CC
Confidence 344556678889999999999999999999887667899999999999999999999888864 8999999987642 24
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
++||.|+++... ...++ ..++|+++.++|+|||.++..+
T Consensus 113 ~~fD~V~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGL------RNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEeccc------ccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 689999875332 11111 1256899999999999998654
No 76
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.35 E-value=1.2e-11 Score=132.50 Aligned_cols=110 Identities=24% Similarity=0.349 Sum_probs=86.6
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---CC
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---ST 402 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---~~ 402 (526)
...+.++++++|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+++.+ ++++++|+.+.... ..
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHHHhcC
Confidence 34456677889999999999999999985 3689999999999999999999999875 89999999765322 13
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
..||.|++|||..|... .+++... .++|+ .++|.+|.
T Consensus 361 ~~~D~vi~dPPr~G~~~------------------------~~l~~l~-~l~~~-~ivyvsc~ 397 (431)
T TIGR00479 361 QIPDVLLLDPPRKGCAA------------------------EVLRTII-ELKPE-RIVYVSCN 397 (431)
T ss_pred CCCCEEEECcCCCCCCH------------------------HHHHHHH-hcCCC-EEEEEcCC
Confidence 46999999999875321 2344333 37776 47888896
No 77
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.1e-12 Score=118.00 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=100.4
Q ss_pred ccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc
Q 009769 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~ 391 (526)
.|..+.|..-...+..++.+++|++||++|||+|+.+..+|++. ++|+++|+.+.-.+.|++|++.+|+.| |.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 67777777777888899999999999999999999999999983 599999999999999999999999987 99999
Q ss_pred CccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 392 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+|...-.+. ...||+|++.+-+.. +-+..++.||+||+||.-.-
T Consensus 127 gDG~~G~~~-~aPyD~I~Vtaaa~~----------------------------vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPE-EAPYDRIIVTAAAPE----------------------------VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCC-CCCcCEEEEeeccCC----------------------------CCHHHHHhcccCCEEEEEEc
Confidence 999775432 368999999766521 12344677999999996543
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.33 E-value=6.1e-12 Score=120.91 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=88.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcc-ccccc-cCCCCCcEEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFAD-NSTVKCDKVLL 410 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~-~~~~~-~~~~~fD~Vl~ 410 (526)
++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++++..++.+ +.++++|+ ..+.. .....||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEE
Confidence 57899999999999999999875 45799999999999999999999988865 89999999 54432 22467999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+.|.. |......... ..+..+++.+.++|||||.++++++
T Consensus 118 ~~~~p------------~~~~~~~~~~--~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 118 NFPDP------------WPKKRHHKRR--LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ECCCC------------CCCccccccc--cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 75431 1111000000 1245679999999999999998765
No 79
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.5e-11 Score=130.28 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=92.5
Q ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-
Q 009769 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS- 401 (526)
Q Consensus 323 ~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~- 401 (526)
..+...++..++++|||+.||.|++|+.+|.. ..+|+|+|+++.+++.|++|++.+|+.| +++..+|+.++....
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhcc
Confidence 34455667778899999999999999999964 6799999999999999999999999998 999999999887654
Q ss_pred -CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 402 -TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 402 -~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
...||.|++|||-+|.+- ++++...++ +|- .+||++|-
T Consensus 359 ~~~~~d~VvvDPPR~G~~~------------------------~~lk~l~~~-~p~-~IvYVSCN 397 (432)
T COG2265 359 EGYKPDVVVVDPPRAGADR------------------------EVLKQLAKL-KPK-RIVYVSCN 397 (432)
T ss_pred ccCCCCEEEECCCCCCCCH------------------------HHHHHHHhc-CCC-cEEEEeCC
Confidence 357999999999988552 235554444 332 58999994
No 80
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.33 E-value=3.7e-11 Score=120.06 Aligned_cols=120 Identities=16% Similarity=0.274 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHH--cCCCccEEEEcCccccccccC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL--HQVNSVIRTIHADLRTFADNS 401 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~--~g~~~~v~~~~~D~~~~~~~~ 401 (526)
++...+.++++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.++++... .+...+++++++|+.+++. .
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~-~ 142 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF-D 142 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC-C
Confidence 344556778899999999999999999998766668999999999999999887642 1222248899999987653 3
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
.+.||.|++.-- +..-++ ...+|.++.+.|||||+++..+.+-
T Consensus 143 ~~sfD~V~~~~~------l~~~~d----------------~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYG------LRNVVD----------------RLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCcEEEEEECCC
Confidence 468999985311 111111 1356999999999999999887653
No 81
>PTZ00146 fibrillarin; Provisional
Probab=99.32 E-value=3.1e-11 Score=120.59 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=85.4
Q ss_pred hHHHHHHh------cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcc
Q 009769 321 SAGLVVAV------VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (526)
Q Consensus 321 ~s~l~~~~------l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~ 394 (526)
-|.|.+.+ +.+++|++|||+|||||+++.+++..+++.++|+|+|+++.+++.+.+.++.. .| |.++..|+
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da 190 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDA 190 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCc
Confidence 35555444 45789999999999999999999999887899999999998887666665432 33 67888998
Q ss_pred ccccc--cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 395 RTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 395 ~~~~~--~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
..... .....||+|++|... |+ ....++.++.++|||||.++++
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva~---------pd---------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVAQ---------PD---------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCCC---------cc---------------hHHHHHHHHHHhccCCCEEEEE
Confidence 65321 113579999999742 21 0123456789999999999974
No 82
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.32 E-value=1.9e-11 Score=127.64 Aligned_cols=140 Identities=18% Similarity=0.263 Sum_probs=97.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC------------
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------ 401 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~------------ 401 (526)
+.+|||+|||+|.+++.++.. ..+|+++|+++.+++.+++|++.+++++ ++++++|+.++....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcccccccccc
Confidence 357999999999999988875 3589999999999999999999999975 899999998754321
Q ss_pred ---CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHH
Q 009769 402 ---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 478 (526)
Q Consensus 402 ---~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~ 478 (526)
..+||.|++|||.+|..- +++....+ | +.+||.+|.- ..-..-+..+
T Consensus 283 ~~~~~~~D~v~lDPPR~G~~~------------------------~~l~~l~~---~-~~ivyvSC~p--~tlarDl~~L 332 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAGLDD------------------------ETLKLVQA---Y-ERILYISCNP--ETLCENLETL 332 (362)
T ss_pred cccCCCCCEEEECCCCCCCcH------------------------HHHHHHHc---c-CCEEEEEeCH--HHHHHHHHHH
Confidence 125899999999865221 22333333 3 5689999965 2212223333
Q ss_pred HHhCCCCeEecCCCCCCCCcccCCceEEEcCCCCCCCceEEEEEEe
Q 009769 479 LLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 524 (526)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 524 (526)
. .+|++..+.+ +.++|+.+..+- ++.|+|
T Consensus 333 ~---~gY~l~~v~~------------~DmFPqT~HvE~--v~lL~r 361 (362)
T PRK05031 333 S---QTHKVERFAL------------FDQFPYTHHMEC--GVLLEK 361 (362)
T ss_pred c---CCcEEEEEEE------------cccCCCCCcEEE--EEEEEe
Confidence 2 2577765431 235687776665 666655
No 83
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.2e-11 Score=122.63 Aligned_cols=143 Identities=18% Similarity=0.313 Sum_probs=108.1
Q ss_pred ccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009769 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (526)
Q Consensus 318 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~ 397 (526)
|-..-.++...+.++||.+|||+|||.|+.++++|+.. +.+|+|+++|++..+.+++.++..|+..+++++..|..++
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 33445567778899999999999999999999999985 5899999999999999999999999997799999998887
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHH
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 477 (526)
. ++||.|+. .|++..-- . +-...+++.+.+.|+|||.++..+.+....+.. ....
T Consensus 135 ~----e~fDrIvS------vgmfEhvg-------~-------~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~ 189 (283)
T COG2230 135 E----EPFDRIVS------VGMFEHVG-------K-------ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPD 189 (283)
T ss_pred c----cccceeee------hhhHHHhC-------c-------ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchH
Confidence 6 45999973 33322111 1 123467999999999999999876654432221 3345
Q ss_pred HHHhC--CCCeE
Q 009769 478 FLLRH--PEFSI 487 (526)
Q Consensus 478 ~l~~~--~~~~~ 487 (526)
|+.++ |+..+
T Consensus 190 ~i~~yiFPgG~l 201 (283)
T COG2230 190 FIDKYIFPGGEL 201 (283)
T ss_pred HHHHhCCCCCcC
Confidence 55554 54433
No 84
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=7.8e-12 Score=125.31 Aligned_cols=124 Identities=20% Similarity=0.318 Sum_probs=89.4
Q ss_pred ccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009769 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (526)
Q Consensus 318 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~ 397 (526)
|...-.+++..++++||++|||+|||.|+.+..+|+.. +.+|+++.+|+...+.+++.+++.|+.+++++...|.+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 33344567778899999999999999999999999985 4799999999999999999999999998899999998876
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
. .+||.|++ .|++-+-. .+. ...+++.+.++|||||+++..+++..
T Consensus 125 ~----~~fD~IvS------i~~~Ehvg-------~~~-------~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 125 P----GKFDRIVS------IEMFEHVG-------RKN-------YPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp ------S-SEEEE------ESEGGGTC-------GGG-------HHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred C----CCCCEEEE------EechhhcC-------hhH-------HHHHHHHHHHhcCCCcEEEEEecccc
Confidence 5 37999974 23322211 111 23569999999999999987666543
No 85
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.2e-11 Score=111.55 Aligned_cols=120 Identities=27% Similarity=0.303 Sum_probs=95.8
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEE
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
.+.-.|..|+|+|||+|..++.++.+ +..+|+|+|+++++++.+++|+.+++. .+.++.+|+.++. .+||.|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g--~v~f~~~dv~~~~----~~~dtv 112 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLG--DVEFVVADVSDFR----GKFDTV 112 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCC--ceEEEEcchhhcC----CccceE
Confidence 34456789999999999999887764 468999999999999999999999443 4999999998876 579999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 483 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 483 (526)
+.|||. |..++++|. .+|..|++.- ..||| +|..-+.+.+.++...+.
T Consensus 113 imNPPF---G~~~rhaDr-----------------~Fl~~Ale~s----~vVYs---iH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 113 IMNPPF---GSQRRHADR-----------------PFLLKALEIS----DVVYS---IHKAGSRDFVEKFAADLG 160 (198)
T ss_pred EECCCC---ccccccCCH-----------------HHHHHHHHhh----heEEE---eeccccHHHHHHHHHhcC
Confidence 999998 555677663 4577777763 57774 666667888888887764
No 86
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=5.3e-11 Score=115.31 Aligned_cols=170 Identities=20% Similarity=0.202 Sum_probs=116.6
Q ss_pred cccceeeccchHHHHHHhcC------CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC
Q 009769 311 KEGLCAVQDESAGLVVAVVD------PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (526)
Q Consensus 311 ~~G~~~iQd~~s~l~~~~l~------~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~ 384 (526)
+.|.++...++.-++-..++ -..+..+||+|||+|.+++.++..++ +++++|+|.|+.++..+.+|++++++.
T Consensus 120 ~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~ 198 (328)
T KOG2904|consen 120 KPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLS 198 (328)
T ss_pred cCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhc
Confidence 45666666665544433322 12356899999999999999999877 899999999999999999999999999
Q ss_pred ccEEEEcCcc----ccccccCCCCCcEEEEcCCCCCCccc-cCCchhhccCCHHHHH---HHHHHHHHHHHHHHccCcCC
Q 009769 385 SVIRTIHADL----RTFADNSTVKCDKVLLDAPCSGLGVL-SKRADLRWNRRLEDME---ELKILQDELLDAASLLVKPG 456 (526)
Q Consensus 385 ~~v~~~~~D~----~~~~~~~~~~fD~Vl~D~Pcsg~G~l-~~~p~~~~~~~~~~l~---~l~~~q~~lL~~a~~~LkpG 456 (526)
+++.+++.++ ....+...+++|.+++|||+--.--+ .-+|+++-....-.+. +.......++.-|.++|+||
T Consensus 199 g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 199 GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 9998886544 33222234789999999999422111 1134443222211111 23445567788999999999
Q ss_pred CEEEEEeCCCChhhhHHHHHHHHHhCC
Q 009769 457 GVLVYSTCSIDPEENEERVEAFLLRHP 483 (526)
Q Consensus 457 G~lvystcs~~~~Ene~vv~~~l~~~~ 483 (526)
|.+++.+.-. .+....+..++...+
T Consensus 279 g~~~le~~~~--~~~~~lv~~~m~s~~ 303 (328)
T KOG2904|consen 279 GFEQLELVER--KEHSYLVRIWMISLK 303 (328)
T ss_pred CeEEEEeccc--ccCcHHHHHHHHhch
Confidence 9999877532 333446667766554
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.29 E-value=5.4e-11 Score=123.55 Aligned_cols=120 Identities=19% Similarity=0.372 Sum_probs=97.4
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCcE
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~fD~ 407 (526)
+....+..+||+|||+|..++++|... +...++|+|+++.++..+.+++...|+.| +.++++|+..+... ..+.+|.
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeE
Confidence 344557799999999999999999984 57899999999999999999999999987 89999999765322 2468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
|++..|+ .|....+ .++ .+..+|+.+.++|+|||.+.+.|.+.
T Consensus 196 I~lnFPd------------PW~KkrH--RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 196 IFVHFPV------------PWDKKPH--RRV--ISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEeCCC------------Cccccch--hhc--cHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9998776 2433322 222 36789999999999999999998763
No 88
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=7.6e-12 Score=119.25 Aligned_cols=102 Identities=36% Similarity=0.571 Sum_probs=79.4
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
.++|+.|+|++||.|.+++.+|.. .....|+|+|++|..++.+++|++.+++.+++.++++|++++.. ...||.|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 578999999999999999999985 34678999999999999999999999999999999999999876 478999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+.|.++. .+|..+..++++||.+.|
T Consensus 176 ~lp~~~~--------------------------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 176 NLPESSL--------------------------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp --TSSGG--------------------------GGHHHHHHHEEEEEEEEE
T ss_pred CChHHHH--------------------------HHHHHHHHHhcCCcEEEC
Confidence 9997532 358899999999999876
No 89
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.28 E-value=3.5e-11 Score=115.03 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+++.+ ++++++|+.+........||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhhcCCCceEEEEC
Confidence 46789999999999999876554 25799999999999999999999999875 8999999987653233469999999
Q ss_pred CCC
Q 009769 412 APC 414 (526)
Q Consensus 412 ~Pc 414 (526)
||+
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 997
No 90
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=5.5e-11 Score=123.29 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
+++.+|||+|||+|+.+..+++.. .++|+|+|+|+.+++.++++++..++.++++++++|+.+++. ..+.||.|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF-EDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC-CCCCccEEEEC
Confidence 678899999999999999999864 479999999999999999999999987679999999987642 34689999862
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
-. +.+.++ ...++.++.++|||||+++++++.
T Consensus 194 ~~------~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 194 ES------GEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred Cc------hhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11 111111 125689999999999999987753
No 91
>PLN02672 methionine S-methyltransferase
Probab=99.27 E-value=4.2e-11 Score=137.94 Aligned_cols=171 Identities=13% Similarity=0.187 Sum_probs=117.5
Q ss_pred ccceeeccchHHHHHHhcCCC-----CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC--
Q 009769 312 EGLCAVQDESAGLVVAVVDPQ-----PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-- 384 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~-----~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-- 384 (526)
.|.++..+++..++-. +... ++.+|||+|||+|..++.++...+ .++|+|+|+|+.+++.+++|++.++++
T Consensus 93 p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~ 170 (1082)
T PLN02672 93 PSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDD 170 (1082)
T ss_pred CCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccc
Confidence 4556666666666544 3322 246899999999999999998754 579999999999999999999987542
Q ss_pred -------------ccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccC-Cchhh--------cc----CCHHHH---
Q 009769 385 -------------SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK-RADLR--------WN----RRLEDM--- 435 (526)
Q Consensus 385 -------------~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~-~p~~~--------~~----~~~~~l--- 435 (526)
++++++++|+.+.......+||+|+.|||+-..+-+.. .++++ +. ......
T Consensus 171 ~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g 250 (1082)
T PLN02672 171 GLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVED 250 (1082)
T ss_pred cccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCC
Confidence 36899999998765322236999999999965443211 12222 10 001111
Q ss_pred HHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEe
Q 009769 436 EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 488 (526)
Q Consensus 436 ~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 488 (526)
.....+++.++.++.++|+|||.++ |-+.....+.+.+.++.++ +|+..
T Consensus 251 ~dGL~~yr~i~~~a~~~L~pgG~l~---lEiG~~q~~~v~~~l~~~~-gf~~~ 299 (1082)
T PLN02672 251 QFGLGLIARAVEEGISVIKPMGIMI---FNMGGRPGQAVCERLFERR-GFRIT 299 (1082)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEE---EEECccHHHHHHHHHHHHC-CCCee
Confidence 3456778899999999999999998 4445555555553566654 35543
No 92
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.26 E-value=7.5e-11 Score=122.73 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=67.1
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-------------
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 401 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~------------- 401 (526)
.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.+++|++.+++.+ ++++++|+.++....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccc
Confidence 47999999999999998876 3589999999999999999999999976 899999998765320
Q ss_pred --CCCCcEEEEcCCCCCC
Q 009769 402 --TVKCDKVLLDAPCSGL 417 (526)
Q Consensus 402 --~~~fD~Vl~D~Pcsg~ 417 (526)
...||.|++|||-+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 1248999999997653
No 93
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.26 E-value=8.7e-12 Score=119.64 Aligned_cols=121 Identities=22% Similarity=0.311 Sum_probs=97.6
Q ss_pred chHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009769 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (526)
Q Consensus 320 ~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~ 399 (526)
...+++..++......+||++||+.|..|+.+|+.++..++|+++|+++++.+.+++++++.|+.++|+++.+|+.+..+
T Consensus 32 ~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 32 ETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 34445544444444569999999999999999998888899999999999999999999999998899999999988654
Q ss_pred cC-----CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 400 NS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 400 ~~-----~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.. .++||.|++|+.-. .+...++.+.++|+|||.++.-.+-
T Consensus 112 ~l~~~~~~~~fD~VFiDa~K~-------------------------~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDADKR-------------------------NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHTTTTTSEEEEEEESTGG-------------------------GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHHhccCCCceeEEEEccccc-------------------------chhhHHHHHhhhccCCeEEEEcccc
Confidence 32 25799999998752 1345678888999999999987664
No 94
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=5e-11 Score=118.69 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=86.7
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++++..|+.++++++++|+.++.....+.||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 45679999999999999999985 479999999999999999999999987668999999987654345789999864
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
... .|..+ ...+|..+.++|||||+++.....
T Consensus 120 ~vl------------~~~~~----------~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 120 AVL------------EWVAD----------PKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred hHH------------HhhCC----------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence 332 11111 125689999999999999865444
No 95
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=8.5e-11 Score=113.53 Aligned_cols=109 Identities=28% Similarity=0.395 Sum_probs=78.1
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-------ccCCC
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNSTV 403 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-------~~~~~ 403 (526)
+++|.+|||+|||||.++..+++..++.++|+|+|+++ + ....+ ++++++|+.+.. ....+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~-v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVG-VDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCC-cEEEecCCCChHHHHHHHHHhCCC
Confidence 35788999999999999999999877678999999998 1 13344 789999998752 11246
Q ss_pred CCcEEEEcC-CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 404 KCDKVLLDA-PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 404 ~fD~Vl~D~-Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.||.|++|+ |.. .| +|. .+......+...+|+.+.++|||||.++..+
T Consensus 117 ~~D~V~S~~~~~~-~g----~~~-------~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNM-SG----TPA-------VDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCcc-CC----ChH-------HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999986 321 11 111 1111112224578999999999999999653
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.25 E-value=8.7e-11 Score=119.04 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=96.7
Q ss_pred chHHHHHHhcC--CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009769 320 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (526)
Q Consensus 320 ~~s~l~~~~l~--~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~ 397 (526)
++..++...+. ..+|.+|||+|||+|..++.++.. +..+|+|+|+++.+++.+++|++.+++.+.+.+...|....
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 34444444332 457899999999999999887764 35699999999999999999999999887677776663332
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHH
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 477 (526)
..++||+|+++... . ....++..+.++|||||++++|... ..+ .+.+..
T Consensus 222 ---~~~~fDlVvan~~~------------------~-------~l~~ll~~~~~~LkpgG~li~sgi~--~~~-~~~v~~ 270 (288)
T TIGR00406 222 ---IEGKADVIVANILA------------------E-------VIKELYPQFSRLVKPGGWLILSGIL--ETQ-AQSVCD 270 (288)
T ss_pred ---cCCCceEEEEecCH------------------H-------HHHHHHHHHHHHcCCCcEEEEEeCc--HhH-HHHHHH
Confidence 23589999987432 1 1235688999999999999987642 333 334455
Q ss_pred HHHhCCCCeEec
Q 009769 478 FLLRHPEFSIDP 489 (526)
Q Consensus 478 ~l~~~~~~~~~~ 489 (526)
.++++ |++..
T Consensus 271 ~~~~~--f~~~~ 280 (288)
T TIGR00406 271 AYEQG--FTVVE 280 (288)
T ss_pred HHHcc--Cceee
Confidence 55554 66654
No 97
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.25 E-value=1.9e-11 Score=115.45 Aligned_cols=107 Identities=23% Similarity=0.339 Sum_probs=78.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCcEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 409 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---~~~~fD~Vl 409 (526)
+|.+|||+|||+|..++.++++ +..+|+.||.++..+..+++|++..++.+.+++++.|+...... ...+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 5889999999999999998886 57899999999999999999999999988889999998765532 257899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHH--ccCcCCCEEEEEe
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS--LLVKPGGVLVYST 463 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~--~~LkpGG~lvyst 463 (526)
+|||+.. ... ...+++... .+|+++|.+|+-+
T Consensus 120 lDPPY~~----------------~~~------~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPYAK----------------GLY------YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--STTS----------------CHH------HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCccc----------------chH------HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 9999931 000 012344443 8999999888644
No 98
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=1.2e-10 Score=111.45 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=87.3
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~ 401 (526)
...+...+...++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..++.+ +++...|+.++..
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~-- 92 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTF-- 92 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCc--
Confidence 334455566667789999999999999999975 4699999999999999999999988875 7888899876542
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
...||.|++..... | ..+.+ ...++..+.++|||||.+++.
T Consensus 93 ~~~fD~I~~~~~~~------------~-~~~~~-------~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 93 DGEYDFILSTVVLM------------F-LEAKT-------IPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCCcCEEEEecchh------------h-CCHHH-------HHHHHHHHHHHcCCCcEEEEE
Confidence 35799998642210 1 11112 235699999999999996544
No 99
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.23 E-value=1.6e-10 Score=116.13 Aligned_cols=112 Identities=16% Similarity=0.283 Sum_probs=89.4
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEE
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
..+.+|++|||+|||+|..++.++..++..++|+++|+++.+++.++++.+..++.+ ++++.+|+..+.. ..+.||.|
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~-~~~~fD~V 150 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPV-ADNSVDVI 150 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCC-CCCceeEE
Confidence 456789999999999999888888877767899999999999999999999999874 8899999877542 24589999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+.+.-. ...++ ...++++++++|||||+++++..
T Consensus 151 i~~~v~------~~~~d----------------~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 151 ISNCVI------NLSPD----------------KERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEcCcc------cCCCC----------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 976322 11111 12468999999999999998653
No 100
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.23 E-value=5.5e-11 Score=109.25 Aligned_cols=85 Identities=27% Similarity=0.335 Sum_probs=65.1
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC--CCCcEEEEcC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST--VKCDKVLLDA 412 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~--~~fD~Vl~D~ 412 (526)
+.|+|+|||.||-++++|.. ..+|+|+|+++.+++.++.|++-+|+.++|+++++|+.+...... ..||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999986 458999999999999999999999998889999999999865432 2289999999
Q ss_pred CCCCCccccC
Q 009769 413 PCSGLGVLSK 422 (526)
Q Consensus 413 Pcsg~G~l~~ 422 (526)
|..|......
T Consensus 78 PWGGp~Y~~~ 87 (163)
T PF09445_consen 78 PWGGPSYSKK 87 (163)
T ss_dssp -BSSGGGGGS
T ss_pred CCCCcccccc
Confidence 9988766543
No 101
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.22 E-value=2.2e-10 Score=108.75 Aligned_cols=113 Identities=27% Similarity=0.381 Sum_probs=80.1
Q ss_pred hcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-------cc
Q 009769 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DN 400 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-------~~ 400 (526)
...+++|++|||+|||||+.+..++....+.++|+++|+++.+ +..+ ++++++|+.+.. ..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHh
Confidence 3446789999999999999999999887667899999999864 2233 677888876532 11
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
...+||+|++|+++...|. |... .... ...+..++..+.++|+|||++++..
T Consensus 95 ~~~~~D~V~~~~~~~~~g~--------~~~~--~~~~-~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGY--------WDID--HLRS-IDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCccEEEcCCCCCCCCC--------cccc--HHHH-HHHHHHHHHHHHHHccCCCEEEEEE
Confidence 2357999999965432332 2111 1111 2346778999999999999999753
No 102
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.22 E-value=1.1e-10 Score=111.44 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=84.3
Q ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009769 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (526)
Q Consensus 323 ~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~ 402 (526)
..+...+...++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..+++ +.+...|+.... ..
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~--~~ 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA--LN 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc--cc
Confidence 34445555556679999999999999999974 479999999999999999999888875 667777765433 23
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.+||.|++...... .+..+ ...+++.+.++|||||++++.+
T Consensus 93 ~~fD~I~~~~~~~~-------------~~~~~-------~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMF-------------LQAGR-------VPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEeccccc-------------CCHHH-------HHHHHHHHHHHhCCCcEEEEEE
Confidence 57999987554311 01111 2356899999999999966543
No 103
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.1e-10 Score=114.86 Aligned_cols=139 Identities=21% Similarity=0.291 Sum_probs=99.8
Q ss_pred cchHHHHHHhcC--CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 319 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 319 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
-++..+...++. .++|.+|||+|||+|-.+++++.+ +..+++|+|++|-.++.+++|++++++...++.-..+...
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 345556555554 468999999999999999988875 5788999999999999999999999998523333333333
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHH
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 476 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~ 476 (526)
... .++||+|+.|- |+..-..+...+.+.|||||+++.|- +..+. ++.|.
T Consensus 224 ~~~--~~~~DvIVANI-------------------------LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~ 273 (300)
T COG2264 224 VPE--NGPFDVIVANI-------------------------LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVA 273 (300)
T ss_pred hcc--cCcccEEEehh-------------------------hHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHH
Confidence 222 35899999752 34445577899999999999999876 44444 34444
Q ss_pred HHHHhCCCCeEecC
Q 009769 477 AFLLRHPEFSIDPA 490 (526)
Q Consensus 477 ~~l~~~~~~~~~~~ 490 (526)
..+.+. +|++++.
T Consensus 274 ~a~~~~-gf~v~~~ 286 (300)
T COG2264 274 EAYEQA-GFEVVEV 286 (300)
T ss_pred HHHHhC-CCeEeEE
Confidence 444433 5777654
No 104
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.1e-10 Score=108.95 Aligned_cols=108 Identities=24% Similarity=0.304 Sum_probs=85.6
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC--CcEEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK--CDKVL 409 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~--fD~Vl 409 (526)
-.|.+|||++||+|+.++..+++ +...++.+|.+...+..+++|++.+++...++++..|+..+......+ ||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 36889999999999999999986 578999999999999999999999998777899999998765544444 99999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHH-HHHHHccCcCCCEEEE
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL-LDAASLLVKPGGVLVY 461 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~l-L~~a~~~LkpGG~lvy 461 (526)
+|||+- .|+ ...+..+ +-.-..+|+|+|.+|.
T Consensus 120 lDPPy~-~~l-------------------~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 120 LDPPYA-KGL-------------------LDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred eCCCCc-cch-------------------hhHHHHHHHHHhcCCcCCCcEEEE
Confidence 999993 222 1111111 2234678999998884
No 105
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=1.5e-10 Score=114.84 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=87.1
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHc-cCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~-~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl 409 (526)
+.++.+|||+|||+|..+..+++.+ .+.++++++|+|+.+++.+++++..++..++++++++|+.+.+. ..+|.|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---ENASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---CCCCEEe
Confidence 3468899999999999999888754 35689999999999999999999998887679999999887652 3589887
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
+...- .+ ..+. ....+++++.+.|||||.++.+...
T Consensus 131 ~~~~l------------~~-l~~~-------~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTL------------QF-LEPS-------ERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHH------------Hh-CCHH-------HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 53211 00 0111 1346799999999999999988643
No 106
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.20 E-value=4.8e-10 Score=111.36 Aligned_cols=119 Identities=25% Similarity=0.306 Sum_probs=85.9
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..++.+|||+|||+|..++.++.. + ..+|+|+|+|+.+++.+++|++.+++...+.+..+|. +||.|++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vva 185 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVA 185 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEE
Confidence 457899999999999998877653 3 4579999999999999999999998854455444331 6999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEec
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 489 (526)
+... .....++..+.++|||||+++++.... +..+.+...+.++ +|.+..
T Consensus 186 ni~~-------------------------~~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~~~l~~~-Gf~~~~ 235 (250)
T PRK00517 186 NILA-------------------------NPLLELAPDLARLLKPGGRLILSGILE---EQADEVLEAYEEA-GFTLDE 235 (250)
T ss_pred cCcH-------------------------HHHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHHHHHHHC-CCEEEE
Confidence 6321 112356889999999999999875432 2233444555554 566654
No 107
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.1e-10 Score=117.41 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=88.0
Q ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009769 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (526)
Q Consensus 323 ~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~ 402 (526)
..+...++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++.+|+++ +.++++|+...... .
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~-~ 147 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPE-F 147 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccc-c
Confidence 344556678889999999999999999999987656789999999999999999999999875 88899998765432 2
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
..||.|+++.... .+.....+.|+|||+++...
T Consensus 148 ~~fD~Ii~~~g~~----------------------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTVGVD----------------------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECCchH----------------------------HhHHHHHHhcCCCCEEEEEe
Confidence 5699999864331 12334567899999988643
No 108
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.17 E-value=6.7e-11 Score=113.65 Aligned_cols=109 Identities=28% Similarity=0.283 Sum_probs=86.5
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
-+|.+|||+|||-|..+..+|+. +..|+|+|+++..++.++..+...|+. +...+..+.++... .++||+|++-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-GGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-CCCccEEEEh
Confidence 36889999999999999999986 489999999999999999999999986 56677777666542 3799999851
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~ 468 (526)
-++ +++... ..++..+.+++||||.++.||-.-+.
T Consensus 132 ------EVl---------------EHv~dp-~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 132 ------EVL---------------EHVPDP-ESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred ------hHH---------------HccCCH-HHHHHHHHHHcCCCcEEEEeccccCH
Confidence 222 222221 24799999999999999999976443
No 109
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.17 E-value=1.8e-10 Score=113.44 Aligned_cols=123 Identities=18% Similarity=0.142 Sum_probs=101.3
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
.+..+++..++......+||++|++.|..|+.+|..++..++|+++|.++...+.+++++++.|+.++|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 45556666666655567999999999999999999887789999999999999999999999999889999999998865
Q ss_pred ccC------CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 399 DNS------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 399 ~~~------~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
+.. .++||.|++|+... .+...++.+.++|+|||.++.-.+-+
T Consensus 145 ~~l~~~~~~~~~fD~iFiDadK~-------------------------~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDADKD-------------------------NYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred HHHHhccccCCcccEEEecCCHH-------------------------HhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 432 25899999997641 13355788889999999999766543
No 110
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=105.92 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=92.4
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEE----E
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL----L 410 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl----~ 410 (526)
++|||+|||.|.....+++. +=++.++++|.|+.+++.|+..+++.+++|.|++.+.|+++. ....++||+|+ +
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence 38999999999999999986 335679999999999999999999999998899999999886 34467888886 3
Q ss_pred cCCC-CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHH
Q 009769 411 DAPC-SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 475 (526)
Q Consensus 411 D~Pc-sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv 475 (526)
|+-. |+.+...| +. -.+...-++|+|||++|+.+|.+...|-.+.+
T Consensus 147 DAisLs~d~~~~r-~~------------------~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 147 DAISLSPDGPVGR-LV------------------VYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred eeeecCCCCcccc-ee------------------eehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 3322 22222111 11 13667788899999999999999887655444
No 111
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.16 E-value=2.4e-10 Score=108.60 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCcEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 409 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---~~~fD~Vl 409 (526)
+|.+|||+|||+|..++.++++ +..+|+++|.++..++.+++|++.+++.++++++++|+..+.... ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5789999999999999999986 346899999999999999999999998766899999997654321 22489999
Q ss_pred EcCCCC
Q 009769 410 LDAPCS 415 (526)
Q Consensus 410 ~D~Pcs 415 (526)
+|||+.
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999994
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.16 E-value=5.4e-10 Score=110.64 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=94.8
Q ss_pred CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEE
Q 009769 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl 409 (526)
...++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++ . .++++++|+.++.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~--~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES--NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc--cCCCcEEE
Confidence 344567999999999999998887643 469999999999999998763 2 37789999988753 36799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE--EEeCC-CChhhhHHHHHHHHHhCCCCe
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV--YSTCS-IDPEENEERVEAFLLRHPEFS 486 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv--ystcs-~~~~Ene~vv~~~l~~~~~~~ 486 (526)
+|||+.....-.......|.-.....+.+ .-..++..+..+|+|+|.+. |+.-- ++..-..+...++|+.+ +|.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~-g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT-GLV 208 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhc-CcE
Confidence 99999653332222211221000000000 02467888899999999754 44311 12222233455677765 454
Q ss_pred Eec
Q 009769 487 IDP 489 (526)
Q Consensus 487 ~~~ 489 (526)
..+
T Consensus 209 ~~~ 211 (279)
T PHA03411 209 TYA 211 (279)
T ss_pred ecC
Confidence 443
No 113
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.16 E-value=2e-10 Score=117.58 Aligned_cols=109 Identities=26% Similarity=0.279 Sum_probs=84.4
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
+.+|.+|||+|||+|..+..++.. .++|+|+|.++.+++.+++++...+....++++++|+.++.. ..++||+|++
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~~~~FD~Vi~ 204 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-EGRKFDAVLS 204 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-ccCCCCEEEE
Confidence 456789999999999999988863 479999999999999999988776654458999999887653 3468999985
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
- +++.+-++ ...+|..+.++|||||.++++|-.
T Consensus 205 ~------~vLeHv~d----------------~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 205 L------EVIEHVAN----------------PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred h------hHHHhcCC----------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 2 12211111 135789999999999999988743
No 114
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.16 E-value=2.3e-10 Score=119.96 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=92.7
Q ss_pred cccccceeeccchHHHHHHhcCCC-CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccE
Q 009769 309 LLKEGLCAVQDESAGLVVAVVDPQ-PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387 (526)
Q Consensus 309 ~~~~G~~~iQd~~s~l~~~~l~~~-~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v 387 (526)
.|.+.....-..-+.+++..+... ++.+|||++||+|..++.++...+ ..+|+++|+++..++.+++|++.+++.+ +
T Consensus 32 vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~ 109 (382)
T PRK04338 32 VFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-E 109 (382)
T ss_pred eeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-e
Confidence 343333333333344444544432 457999999999999999988643 4589999999999999999999999986 6
Q ss_pred EEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 388 ~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+++++|+..+... ..+||+|++||| |++. .+++.|...+++||.+.++
T Consensus 110 ~v~~~Da~~~l~~-~~~fD~V~lDP~--Gs~~------------------------~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 110 KVFNKDANALLHE-ERKFDVVDIDPF--GSPA------------------------PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEEhhhHHHHHhh-cCCCCEEEECCC--CCcH------------------------HHHHHHHHHhcCCCEEEEE
Confidence 7899999776532 357999999998 3322 4588888999998866655
No 115
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=2.4e-10 Score=116.62 Aligned_cols=106 Identities=30% Similarity=0.460 Sum_probs=92.1
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..+|++|+||+||-|.+|+.+|.. +..+|+|+|++|..++.+++|++.+++.+.+..+++|++.+.... ..||.|++
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim 262 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIM 262 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEe
Confidence 346999999999999999999986 344599999999999999999999999998999999999987543 67999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.-|.+. .+++..|.+.+++||.+.|.+-.
T Consensus 263 ~~p~~a--------------------------~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 263 GLPKSA--------------------------HEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred CCCCcc--------------------------hhhHHHHHHHhhcCcEEEEEecc
Confidence 888742 25689999999999999987654
No 116
>PHA03412 putative methyltransferase; Provisional
Probab=99.14 E-value=1.8e-10 Score=111.60 Aligned_cols=132 Identities=18% Similarity=0.261 Sum_probs=90.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc--CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~--~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
.+.+|||+|||+|.+++.+++.+. +..+|+++|+++.+++.+++|.. .+.++++|+..... ..+||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~--~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF--DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc--cCCccEEEE
Confidence 367999999999999999998753 35699999999999999998753 26788899876542 368999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE--------EEeCCCCh-hhh--HHHHHHHH
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV--------YSTCSIDP-EEN--EERVEAFL 479 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv--------ystcs~~~-~En--e~vv~~~l 479 (526)
|||+.-... .+..- ...-......++..|.+++++|+.++ ||-|-... +++ .....+|+
T Consensus 121 NPPY~~~~~----~d~~a------r~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 190 (241)
T PHA03412 121 NPPFGKIKT----SDFKG------KYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKCKKFL 190 (241)
T ss_pred CCCCCCccc----cccCC------cccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHHHHHH
Confidence 999964331 11000 00112345568999999888877755 55554431 222 23455666
Q ss_pred HhC
Q 009769 480 LRH 482 (526)
Q Consensus 480 ~~~ 482 (526)
++.
T Consensus 191 ~~~ 193 (241)
T PHA03412 191 DET 193 (241)
T ss_pred Hhc
Confidence 653
No 117
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.14 E-value=1.5e-09 Score=110.84 Aligned_cols=114 Identities=23% Similarity=0.187 Sum_probs=82.0
Q ss_pred hcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcE
Q 009769 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
.+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++...+..+...++.+...|+.+++.. ..||.
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~--~~FD~ 191 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL--YAFDT 191 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC--CCcCE
Confidence 345677899999999999999888864 34589999999999877654444333334577788888776532 47999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
|++. |++-+.++ + ...|.++.+.|||||.||+.|..+.
T Consensus 192 V~s~------gvL~H~~d------p----------~~~L~el~r~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 192 VFSM------GVLYHRKS------P----------LEHLKQLKHQLVIKGELVLETLVID 229 (314)
T ss_pred EEEc------chhhccCC------H----------HHHHHHHHHhcCCCCEEEEEEEEec
Confidence 9852 33322221 1 2458999999999999998876543
No 118
>PRK04457 spermidine synthase; Provisional
Probab=99.14 E-value=1.1e-09 Score=109.33 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=90.5
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..++.+|||+|||.|..+..++... +..+|+++|+++..++.+++++...+...+++++++|+.++......+||.|++
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 3456799999999999999998875 468999999999999999998876555456899999998876554568999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
|... +.+. |. + + ...++++.+.+.|+|||++++..++-
T Consensus 143 D~~~-~~~~----~~--~------l-----~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 143 DGFD-GEGI----ID--A------L-----CTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred eCCC-CCCC----cc--c------c-----CcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 9632 2221 11 0 0 12467999999999999999865543
No 119
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.13 E-value=1.1e-09 Score=109.03 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=87.9
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
.|...+..+...+.+.++.+|||+|||+|..+..+++.. +.++|+++|+|+.+++.++++. .+ +.++.+|+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhc
Confidence 444445555566677788999999999999999999875 4579999999999999998763 22 6788899876
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+.. ..+||+|+++... .|..+ +..++..+.+.|||||.++.++
T Consensus 88 ~~~--~~~fD~v~~~~~l------------~~~~d----------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 88 WQP--PQALDLIFANASL------------QWLPD----------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cCC--CCCccEEEEccCh------------hhCCC----------HHHHHHHHHHhcCCCcEEEEEC
Confidence 642 3589999976543 12111 2356999999999999998753
No 120
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.12 E-value=9.8e-10 Score=108.27 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=85.3
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
.++.+|||+|||+|..+..+++.+. +.++++++|+|+.+++.++++++..+...+++++++|+.++.. ..+|.|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC---CCCCEEee
Confidence 4778999999999999999998753 4789999999999999999999887765568999999987653 35898875
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
.-.. .| ....+ ...+++++.+.|||||.++++..
T Consensus 129 ~~~l------------~~-~~~~~-------~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTL------------QF-LPPED-------RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecch------------hh-CCHHH-------HHHHHHHHHHhcCCCeEEEEeec
Confidence 3221 11 11111 23579999999999999998754
No 121
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.12 E-value=8.5e-11 Score=120.39 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=106.3
Q ss_pred ccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHc------cCCcEEEEEcCChhHHHHHHHHHHHcCCCc
Q 009769 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL------SGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~------~~~~~v~avD~s~~~l~~a~~n~~~~g~~~ 385 (526)
.|.++....-+.+++.++.++++++|+|.|||+|++.+++...+ .....++|+|+++..+..++.|+...|...
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 57788888888999999999999999999999999999888754 246799999999999999999988877643
Q ss_pred c-EEEEcCccccccccC-CCCCcEEEEcCCCCCCcccc--CCchhhccCC--HHHHHHHHHHHHHHHHHHHccCcCCCEE
Q 009769 386 V-IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLS--KRADLRWNRR--LEDMEELKILQDELLDAASLLVKPGGVL 459 (526)
Q Consensus 386 ~-v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~l~--~~p~~~~~~~--~~~l~~l~~~q~~lL~~a~~~LkpGG~l 459 (526)
. ..+.++|........ ..+||.|+.+||++..+... ...+.+|... ... ..+..++.++.+.||+||++
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKS-----NAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTT-----EHHHHHHHHHHHTEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCcc-----chhhhhHHHHHhhcccccce
Confidence 2 357788876654332 46899999999997653211 1112233321 111 11224789999999999998
Q ss_pred EEEeCC--CChhhhHHHHH-HHHHhC
Q 009769 460 VYSTCS--IDPEENEERVE-AFLLRH 482 (526)
Q Consensus 460 vystcs--~~~~Ene~vv~-~~l~~~ 482 (526)
++..-+ +.....+..+. .+++++
T Consensus 180 ~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 180 AIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred eEEecchhhhccchHHHHHHHHHhhc
Confidence 766543 22322234454 444443
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.11 E-value=2.3e-10 Score=115.38 Aligned_cols=135 Identities=25% Similarity=0.317 Sum_probs=93.8
Q ss_pred cchHHHHHHhcC--CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 319 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 319 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
-++.+++..++. ..+|.+|||+|||+|..++..+.+ +..+|+|+|+++..++.+++|++.+|+.+++.+. ...+
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~ 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED 220 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc
Confidence 345556555543 467899999999999999988775 4679999999999999999999999998866553 1112
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHH
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 476 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~ 476 (526)
.. ..+||+|+.|--. .....++....++|+|||+|+.|= +..++.+.+.+
T Consensus 221 ~~---~~~~dlvvANI~~-------------------------~vL~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~~ 270 (295)
T PF06325_consen 221 LV---EGKFDLVVANILA-------------------------DVLLELAPDIASLLKPGGYLILSG--ILEEQEDEVIE 270 (295)
T ss_dssp TC---CS-EEEEEEES-H-------------------------HHHHHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHHH
T ss_pred cc---cccCCEEEECCCH-------------------------HHHHHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHHH
Confidence 22 3689999976221 223356777889999999999643 34444455554
Q ss_pred HHHHhCCCCeEecC
Q 009769 477 AFLLRHPEFSIDPA 490 (526)
Q Consensus 477 ~~l~~~~~~~~~~~ 490 (526)
.+++ +|++...
T Consensus 271 -a~~~--g~~~~~~ 281 (295)
T PF06325_consen 271 -AYKQ--GFELVEE 281 (295)
T ss_dssp -HHHT--TEEEEEE
T ss_pred -HHHC--CCEEEEE
Confidence 4443 7877643
No 123
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.11 E-value=3.7e-10 Score=112.45 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=81.2
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~ 404 (526)
+...+...++.+|||+|||+|..+..++... +.++|+|+|+|+.+++.++++ .++++++|+.++.. ...
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--~~~ 89 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--KPD 89 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--CCC
Confidence 3445666788999999999999999999875 467999999999999988652 26688899887642 368
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
||.|+++... .|-.+ +..++.++.+.|||||.+++.
T Consensus 90 fD~v~~~~~l------------~~~~d----------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAAL------------QWVPE----------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhh------------hhCCC----------HHHHHHHHHHhCCCCcEEEEE
Confidence 9999986543 11111 235689999999999999875
No 124
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.10 E-value=4.3e-10 Score=117.28 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=85.6
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
-+|||++||+|..++.++....+..+|+++|+++..++.+++|++.+++.+ +++++.|+..+......+||+|.+||+-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 489999999999999999875455799999999999999999999999875 7899999988765444679999999963
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
+ .. .+++.+.+.+++||.|.+ |||
T Consensus 125 s--~~------------------------~fld~al~~~~~~glL~v-TaT 148 (374)
T TIGR00308 125 T--PA------------------------PFVDSAIQASAERGLLLV-TAT 148 (374)
T ss_pred C--cH------------------------HHHHHHHHhcccCCEEEE-Eec
Confidence 2 11 468999999999886654 443
No 125
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.09 E-value=3.5e-10 Score=112.26 Aligned_cols=117 Identities=20% Similarity=0.299 Sum_probs=88.6
Q ss_pred eeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccc
Q 009769 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (526)
Q Consensus 316 ~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~ 395 (526)
.+|...+..+...+...++.+|||+|||+|..+..++.. ..+++++|+|+.+++.++++... +.++++|+.
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~ 95 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAA------DHYLAGDIE 95 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCC------CCEEEcCcc
Confidence 367777777777777666789999999999999888763 47999999999999998876421 346788887
Q ss_pred cccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 396 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 396 ~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
.++. ..+.||.|+++.+- .|..+ ...+|.++.++|+|||.+++++-
T Consensus 96 ~~~~-~~~~fD~V~s~~~l------------~~~~d----------~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 96 SLPL-ATATFDLAWSNLAV------------QWCGN----------LSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred cCcC-CCCcEEEEEECchh------------hhcCC----------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 7542 34679999875332 23222 13568999999999999998864
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=99.09 E-value=1.1e-09 Score=109.96 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCCEEEEeCCchhHHHHH-HHHHccCCcEEEEEcCChhHHHHHHHHHHH-cCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 333 PGQSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~-la~~~~~~~~v~avD~s~~~l~~a~~n~~~-~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
+.++|+|+|||+|+.|.. ++....++++++++|+++.+++.++++++. .++.+++++..+|+.+.... .+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 568999999999976544 443445678999999999999999999965 88888899999999886432 367999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+ -+-+ |. .+.+.++|++..+.|+|||.+++-+.
T Consensus 202 ~-ALi~-----------~d---------k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 A-ALVG-----------MD---------KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred e-cccc-----------cc---------cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8 3211 10 01134679999999999999998763
No 127
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.08 E-value=1e-09 Score=109.81 Aligned_cols=129 Identities=14% Similarity=0.166 Sum_probs=91.4
Q ss_pred ccccceeecc-chHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEE
Q 009769 310 LKEGLCAVQD-ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388 (526)
Q Consensus 310 ~~~G~~~iQd-~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~ 388 (526)
|-.|++.... +....+...+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.+++++.. .+++.
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~ 102 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIE 102 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceE
Confidence 3344444432 234445556788899999999999999999988753 46999999999999999987654 23588
Q ss_pred EEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 389 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++++|+...+. ..+.||+|++...... .... ....+|+++.++|||||+++.+..
T Consensus 103 ~~~~D~~~~~~-~~~~FD~V~s~~~l~h-------------~~~~-------d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 103 FEANDILKKDF-PENTFDMIYSRDAILH-------------LSYA-------DKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEECCcccCCC-CCCCeEEEEEhhhHHh-------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999876432 2468999986211100 0111 123579999999999999997654
No 128
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.7e-09 Score=104.98 Aligned_cols=127 Identities=20% Similarity=0.376 Sum_probs=103.9
Q ss_pred cceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC
Q 009769 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (526)
Q Consensus 313 G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~ 392 (526)
+--++--+...++...|++.||.+|++.|+|+|+++.++++.+.+.|+++.+|.+..+.+.+.+.++..|+.+.+++++-
T Consensus 85 RTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 85 RTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR 164 (314)
T ss_pred cceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe
Confidence 33344455666888899999999999999999999999999999999999999999999999999999999888999998
Q ss_pred ccccccccC-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChh
Q 009769 393 DLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 469 (526)
Q Consensus 393 D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~ 469 (526)
|+....-.. ...+|.|++|.|. .| ..+-++++.||.+|.-+ ||++|.
T Consensus 165 DVc~~GF~~ks~~aDaVFLDlPa------------Pw---------------~AiPha~~~lk~~g~r~---csFSPC 212 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLDLPA------------PW---------------EAIPHAAKILKDEGGRL---CSFSPC 212 (314)
T ss_pred ecccCCccccccccceEEEcCCC------------hh---------------hhhhhhHHHhhhcCceE---EeccHH
Confidence 886543222 4689999999997 23 23677788899887533 666664
No 129
>PRK08317 hypothetical protein; Provisional
Probab=99.08 E-value=1.9e-09 Score=105.15 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=87.4
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~f 405 (526)
...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++.... ...+++..+|+..... ....|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~-~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF-PDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC-CCCCc
Confidence 45567788999999999999999999998756689999999999999999883332 2347888889876542 24689
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
|.|+++.... .-+ + ...+++++.++|||||.+++..+.
T Consensus 89 D~v~~~~~~~------~~~------~----------~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRVLQ------HLE------D----------PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred eEEEEechhh------ccC------C----------HHHHHHHHHHHhcCCcEEEEEecC
Confidence 9998753221 000 1 235689999999999999988764
No 130
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.04 E-value=2.2e-09 Score=110.34 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=83.3
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~ 404 (526)
+...+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++...+...+..+...++.++.+|+.+++. ...
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--~~~ 189 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--LKA 189 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--cCC
Confidence 344555567889999999999999999885 3457999999999887655544444433358899999987764 478
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
||.|++ .|++.+..+ + ..+|.++.+.|+|||.+++++.
T Consensus 190 FD~V~s------~~vl~H~~d------p----------~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 190 FDTVFS------MGVLYHRRS------P----------LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cCEEEE------CChhhccCC------H----------HHHHHHHHHhcCCCcEEEEEEE
Confidence 999985 233322111 1 2468999999999999998753
No 131
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.04 E-value=2.1e-09 Score=112.99 Aligned_cols=115 Identities=16% Similarity=0.244 Sum_probs=86.4
Q ss_pred hHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009769 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~ 400 (526)
....+...+++++|.+|||+|||+|+.+..+++.. +.+|+++|+|+.+++.++++++ ++. +++...|..++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l--- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc---
Confidence 34456667788899999999999999999999864 4699999999999999999885 332 67788887664
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.+.||.|++-... ..-+ .. ....+++.+.++|||||+++..+..
T Consensus 226 -~~~fD~Ivs~~~~------ehvg-------~~-------~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 -NGQFDRIVSVGMF------EHVG-------PK-------NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred -CCCCCEEEEeCch------hhCC-------hH-------HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 2579999863221 1100 01 1235689999999999999987643
No 132
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.04 E-value=1.7e-10 Score=95.60 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=72.2
Q ss_pred EEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCC
Q 009769 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417 (526)
Q Consensus 338 LDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~ 417 (526)
||+|||+|..+..+++. +..+++++|+++.+++.++++....+ +.++++|+.+++ ..++.||.|++.--..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~-~~~~sfD~v~~~~~~~-- 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLP-FPDNSFDVVFSNSVLH-- 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSS-S-TT-EEEEEEESHGG--
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCc-ccccccccccccccee--
Confidence 89999999999999987 57899999999999999998776544 458899998884 3468999998632221
Q ss_pred ccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 418 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 418 G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
|. ..+..+++++.++|||||++++
T Consensus 72 ----------~~----------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 ----------HL----------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----------GS----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------ec----------cCHHHHHHHHHHHcCcCeEEeC
Confidence 11 2245679999999999999984
No 133
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.04 E-value=6.2e-09 Score=101.77 Aligned_cols=119 Identities=21% Similarity=0.317 Sum_probs=90.2
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~ 403 (526)
.+...+...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..+.+.++.+|+.+... ..+
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 120 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PDN 120 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CCC
Confidence 3444555667889999999999999999987643589999999999999999999887666668899999887652 246
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.||+|++.-- +...+ + ...+|..+.++|+|||.+++.+.+
T Consensus 121 ~~D~I~~~~~------l~~~~---------~-------~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 121 SFDAVTIAFG------LRNVP---------D-------IDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CccEEEEecc------cccCC---------C-------HHHHHHHHHHhccCCcEEEEEEec
Confidence 7999985211 11111 1 124689999999999999877544
No 134
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.04 E-value=3.2e-09 Score=115.21 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=87.3
Q ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009769 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (526)
Q Consensus 323 ~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~ 402 (526)
..++..+.+.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.+++++.. ...++++.++|+..... ..
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~-~~ 330 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTY-PD 330 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCC-CC
Confidence 344455567788999999999999999999864 46999999999999999988763 33458899999877542 23
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
++||+|++.. ++..-++ ...++.++.++|||||++++++..
T Consensus 331 ~~fD~I~s~~------~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 331 NSFDVIYSRD------TILHIQD----------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCEEEEEECC------cccccCC----------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 6799998631 2211111 125689999999999999987643
No 135
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.04 E-value=6.2e-10 Score=94.56 Aligned_cols=99 Identities=27% Similarity=0.349 Sum_probs=73.7
Q ss_pred EEEeCCchhHHHHHHHHHc--cCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCC
Q 009769 337 IVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 337 VLDl~aG~G~~t~~la~~~--~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
|||+|||+|..+..++..+ ++..+++++|+|+.+++.++++....+.+ ++++++|+.++.. ..++||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~--~~~~~~D~~~l~~-~~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK--VRFVQADARDLPF-SDGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT--SEEEESCTTCHHH-HSSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc--eEEEECCHhHCcc-cCCCeeEEEE----
Confidence 7999999999999999886 22379999999999999999999887773 7899999988764 3568999996
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
++..+ . + .++++ +..++++..++|+|||
T Consensus 74 ~~~~~-~------~-~~~~~-------~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSL-H------H-LSPEE-------LEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGG-G------G-SSHHH-------HHHHHHHHHHTEEEEE
T ss_pred cCCcc-C------C-CCHHH-------HHHHHHHHHHHhCCCC
Confidence 22111 1 1 23333 3456999999999998
No 136
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.03 E-value=8.2e-10 Score=106.93 Aligned_cols=103 Identities=26% Similarity=0.283 Sum_probs=78.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCc-----cEEEEcCccccccccCCCCCcE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~-----~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
.|.+|||+|||.|-.+.+||++ +..|+|+|+++.+++.|++..+.....+ ++++.+.|+.... ++||.
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDa 161 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDA 161 (282)
T ss_pred CCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccce
Confidence 4678999999999999999987 5899999999999999999854443322 2556666665543 46999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
|++ | ++.+-.+.-.++++...+.|||||.|+.+|-
T Consensus 162 Vvc----s------------------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 162 VVC----S------------------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eee----H------------------HHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 984 2 2222233345789999999999999999985
No 137
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.03 E-value=2e-09 Score=104.73 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=82.9
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
++|||+|||+|+.+..+++.. +..+++++|+|+.+++.++++++..|+.++++++..|+...+. .++||+|++.-
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--~~~fD~I~~~~-- 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--PDTYDLVFGFE-- 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--CCCCCEeehHH--
Confidence 379999999999999999875 3579999999999999999999999998889999999865432 35799998421
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++..- .....+++.+.++|||||+++.++.
T Consensus 76 ----~l~~~----------------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 ----VIHHI----------------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ----HHHhC----------------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 11110 1123679999999999999997754
No 138
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.02 E-value=5e-09 Score=107.14 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~ 401 (526)
...+...++..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.++++++..|+.++++++.+|+.+...
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence 4455566677888999999999999999999985 4689999998 78999999999999998889999999876431
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhh
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 470 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~E 470 (526)
..+|.|++.- ++.. | ..+.. ..+|+++.+.|+|||+++.....+...+
T Consensus 214 -~~~D~v~~~~------~lh~-----~--~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~~ 261 (306)
T TIGR02716 214 -PEADAVLFCR------ILYS-----A--NEQLS-------TIMCKKAFDAMRSGGRLLILDMVIDDPE 261 (306)
T ss_pred -CCCCEEEeEh------hhhc-----C--ChHHH-------HHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence 2379887521 1111 1 11211 3569999999999999998766554433
No 139
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.02 E-value=2.8e-09 Score=107.98 Aligned_cols=103 Identities=23% Similarity=0.198 Sum_probs=79.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.++++++..++ + +++...|+..... .++||.|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~--~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI--QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc--cCCccEEEEcc
Confidence 3459999999999999999874 47999999999999999999999888 3 7888888766432 46899998754
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.... .+.. ....+++.+.+.|+|||++++.
T Consensus 193 vl~~-------------l~~~-------~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 193 VLMF-------------LNRE-------RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhh-------------CCHH-------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3210 0111 1235699999999999996653
No 140
>PRK00811 spermidine synthase; Provisional
Probab=98.99 E-value=5.6e-09 Score=105.52 Aligned_cols=114 Identities=12% Similarity=0.206 Sum_probs=86.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC--C--CccEEEEcCccccccccCCCCCcEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V--NSVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g--~--~~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
...+||++|||.|+.+..+++. .+..+|+++|+++..++.+++.+...+ . +.+++++.+|+..+.....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4569999999999999998875 345699999999999999999887643 2 3468999999998765445789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
++|.+-. .+ | ...+ ...++++.+.+.|+|||+++..+.+
T Consensus 155 i~D~~dp-~~-----~-------~~~l-----~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDSTDP-VG-----P-------AEGL-----FTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCCCC-CC-----c-------hhhh-----hHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9996421 01 0 0111 1357789999999999999875443
No 141
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.99 E-value=2.8e-09 Score=103.59 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=62.9
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..++.+|||+|||+|..+..++.. ..+|+|+|+|+.++..+++++...+..+++++.++|+.+.. .+||.|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEE
Confidence 456889999999999999999874 46999999999999999999988877556899999987754 57999985
No 142
>PRK06922 hypothetical protein; Provisional
Probab=98.98 E-value=6.2e-09 Score=113.68 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=88.2
Q ss_pred HhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCC
Q 009769 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~f 405 (526)
.+++..++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.++++....+. .+.++++|+.+++.. .++.|
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCE
Confidence 34455578899999999999999888874 468999999999999999998776654 377888998876532 24689
Q ss_pred cEEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 406 DKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 406 D~Vl~D~Pcsg~-G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
|.|++.++.-.. ..+. .....| .. .....+|+++.+.|||||.++...-+
T Consensus 489 DvVVsn~vLH~L~syIp-~~g~~f--~~-------edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 489 DTIVYSSILHELFSYIE-YEGKKF--NH-------EVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EEEEEchHHHhhhhhcc-cccccc--cH-------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999976543100 0000 000001 11 12346799999999999999987543
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.98 E-value=2.1e-09 Score=102.58 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=97.7
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCcEEEEcC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 412 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--~~~fD~Vl~D~ 412 (526)
..+||+|||.|.+.+++|.. .++..++|+|++..++..+.+.+.+.+++| +.++++|+..+.... ++.+|.|.+.-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeC
Confidence 38999999999999999998 467899999999999999999999999997 899999998854322 47899999987
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHh-CCCCeEec
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR-HPEFSIDP 489 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~-~~~~~~~~ 489 (526)
|.- |.+..+.-.++ .|..+|+...+.|+|||.|.+.|-. ++--+.+...+.. ++.|+...
T Consensus 97 PDP------------WpK~rH~krRl--~~~~fl~~~~~~L~~gG~l~~~TD~---~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 97 PDP------------WPKKRHHKRRL--VNPEFLELLARVLKPGGELYFATDV---EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -----------------SGGGGGGST--TSHHHHHHHHHHEEEEEEEEEEES----HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCC------------Ccccchhhhhc--CCchHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHhcCcCeEEcc
Confidence 762 32222211112 3557899999999999999987742 3333344455555 68888763
No 144
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.97 E-value=5.2e-09 Score=98.96 Aligned_cols=117 Identities=25% Similarity=0.243 Sum_probs=81.9
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
...+.+. ..+..-++.++||+|||.|..++.+|++ +..|+|+|+|+..++.+++.++..+++ |+....|+.+..
T Consensus 17 ~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 17 PTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD 90 (192)
T ss_dssp ---HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS
T ss_pred CCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc
Confidence 3344433 3445445669999999999999999986 579999999999999999999999987 888899987765
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
. ++.||.|++.... ..+ .++.+ ..+++.....++|||++++.+
T Consensus 91 ~--~~~yD~I~st~v~---~fL----------~~~~~-------~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 F--PEEYDFIVSTVVF---MFL----------QRELR-------PQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ---TTTEEEEEEESSG---GGS-----------GGGH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred c--cCCcCEEEEEEEe---ccC----------CHHHH-------HHHHHHHHhhcCCcEEEEEEE
Confidence 3 4679999853221 011 11112 246888899999999998854
No 145
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=5e-09 Score=86.88 Aligned_cols=103 Identities=24% Similarity=0.348 Sum_probs=81.5
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 415 (526)
+|+|+|||+|..+..++. ....+++++|+++..+..+++.....+.. .+.++..|..+.......+||.|++++++.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999998887 34689999999999999998655444444 488899999887642346799999999985
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 416 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 416 g~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.. ...+..+++.+.+.++|||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 31 223456789999999999999875
No 146
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.95 E-value=2.9e-09 Score=103.49 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=97.6
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCcEEEEcC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 412 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--~~~fD~Vl~D~ 412 (526)
..+||+|||.|.+.+++|.. +++..++|||+....+..+.+.+.+.+++| +.+++.|+..+.... ++..|.|.++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 58999999999999999998 667899999999999999999999999975 999999999887654 34899999988
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
|. .|.+..+.-.++ +|..+|+...+.|||||.|.+.|-
T Consensus 128 PD------------PWpKkRH~KRRl--~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 PD------------PWPKKRHHKRRL--TQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CC------------CCCCcccccccc--CCHHHHHHHHHHccCCCEEEEEec
Confidence 87 365555544444 577899999999999999998874
No 147
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.95 E-value=9.7e-10 Score=104.33 Aligned_cols=116 Identities=17% Similarity=0.249 Sum_probs=89.5
Q ss_pred HhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC-ccEEEEcCccccccccC-CCC
Q 009769 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNS-TVK 404 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-~~v~~~~~D~~~~~~~~-~~~ 404 (526)
....++.|++|||.|.|-|..++..+++ +..+|+.+|.++.-++.+.-|--..++. ..++++.+|+.++.+.+ ++.
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 4456777999999999999999988875 4559999999999999888775444432 24789999999887655 567
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
||.|+-|||-.+... .+.. .++..+.+++|||||+|+-.+
T Consensus 206 fDaIiHDPPRfS~Ag--------------eLYs-----eefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 206 FDAIIHDPPRFSLAG--------------ELYS-----EEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cceEeeCCCccchhh--------------hHhH-----HHHHHHHHHHcCcCCcEEEEe
Confidence 999999999843111 1222 367888999999999988444
No 148
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.94 E-value=9.4e-09 Score=105.69 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=100.4
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccC-------------------------------Cc-------EEEE
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG-------------------------------QG-------LVYA 363 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~-------------------------------~~-------~v~a 363 (526)
+..+..+.+-+++..++|..||+|++.+..|.+..+ .+ .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 344455566778889999999999999998876321 11 4789
Q ss_pred EcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH
Q 009769 364 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443 (526)
Q Consensus 364 vD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~ 443 (526)
+|+++.+++.|+.|++..|+.+.|++.++|+..+.... +.+|+||+|||+. .-+ .+-.....++.
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG-eRl-------------g~~~~v~~LY~ 324 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG-ERL-------------GSEALVAKLYR 324 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc-hhc-------------CChhhHHHHHH
Confidence 99999999999999999999999999999999887654 6899999999993 111 11133445788
Q ss_pred HHHHHHHccCcCCCEEEEEe
Q 009769 444 ELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 444 ~lL~~a~~~LkpGG~lvyst 463 (526)
.+...+.+.++--+..|++|
T Consensus 325 ~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 325 EFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHhcCCceEEEEc
Confidence 89999989999778888765
No 149
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=7e-09 Score=98.88 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=103.5
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
+-++..+++..++..-..+++||+|.-+|..++..|..++..|+|+++|+++...+...+..+..|+..+|+++++++.+
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 34556666666666656789999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccc-----CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 397 FADN-----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 397 ~~~~-----~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
..+. ..+.||.+|+|+.-. .+....+++.+++++||.|++-...
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK~-------------------------nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADKD-------------------------NYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccchH-------------------------HHHHHHHHHHhhcccccEEEEeccc
Confidence 5432 257899999997651 1225688999999999999987644
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.93 E-value=2.3e-08 Score=100.39 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=86.1
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCC---CccEEEEcCccccccccCCCCCcEEEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~---~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..+||++|||.|+.+..++... +..+++++|+++..++.+++++...+. ..+++++.+|+..+.....++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4599999999999998887753 356899999999999999998765431 235788889998876544578999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
|++... +. . ..+ ...++++.+.+.|+|||+++..+++.
T Consensus 152 D~~~~~-~~-----~-------~~l-----~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 152 DSTDPV-GP-----A-------ETL-----FTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred eCCCCC-Cc-----c-------cch-----hHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 987421 11 0 011 12467889999999999999887763
No 151
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.93 E-value=1e-08 Score=95.55 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=70.1
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~ 404 (526)
++..+++.++++|||+|||+|..+..+++. .++++++|+++.+++.+++++.. .. +++++++|+.++... ...
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~~-~~~ 77 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDLP-KLQ 77 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCcc-ccC
Confidence 455667778899999999999999999986 47999999999999999998864 23 488999999887532 246
Q ss_pred CcEEEEcCCCC
Q 009769 405 CDKVLLDAPCS 415 (526)
Q Consensus 405 fD~Vl~D~Pcs 415 (526)
||.|+.|+|+.
T Consensus 78 ~d~vi~n~Py~ 88 (169)
T smart00650 78 PYKVVGNLPYN 88 (169)
T ss_pred CCEEEECCCcc
Confidence 99999999983
No 152
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.92 E-value=1.4e-08 Score=99.61 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009769 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (526)
Q Consensus 323 ~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~ 402 (526)
.++...+.+.++.+|||+|||+|..+..+++. ..+++++|+++..+..+++++...+.. +.+...|+........
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcC
Confidence 45555555667889999999999999988874 368999999999999999999887763 6777888877653334
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
++||+|++.-.... .++ ...+|+.+.++|+|||+++++++.-
T Consensus 113 ~~fD~Ii~~~~l~~------~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 113 GQFDVVTCMEMLEH------VPD----------------PASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCccEEEEhhHhhc------cCC----------------HHHHHHHHHHHcCCCcEEEEEecCC
Confidence 68999987433211 111 1246899999999999999887653
No 153
>PRK03612 spermidine synthase; Provisional
Probab=98.90 E-value=9.2e-09 Score=112.48 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=95.4
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHH--HHc---CC-CccEEEEcCccccccccCCCCC
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLH---QV-NSVIRTIHADLRTFADNSTVKC 405 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~--~~~---g~-~~~v~~~~~D~~~~~~~~~~~f 405 (526)
++.++|||+|||+|..+..+++. ++..+|+++|+++++++.++++. ... .. +.+++++++|++++.....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 44679999999999999988874 33379999999999999999853 221 12 2368999999998765556789
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC-hhhhHHHHHHHHHhCCC
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID-PEENEERVEAFLLRHPE 484 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~-~~Ene~vv~~~l~~~~~ 484 (526)
|+|++|+|... .|.. ..+ ...++++.+.+.|||||.++..+++.. ..+.-..+.+.+++. +
T Consensus 375 DvIi~D~~~~~------~~~~------~~L-----~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~-g 436 (521)
T PRK03612 375 DVIIVDLPDPS------NPAL------GKL-----YSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAA-G 436 (521)
T ss_pred CEEEEeCCCCC------Ccch------hcc-----chHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHc-C
Confidence 99999987531 0100 000 124678899999999999998777633 222223344445543 3
Q ss_pred CeEec
Q 009769 485 FSIDP 489 (526)
Q Consensus 485 ~~~~~ 489 (526)
|.+.+
T Consensus 437 f~v~~ 441 (521)
T PRK03612 437 LATTP 441 (521)
T ss_pred CEEEE
Confidence 44333
No 154
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.90 E-value=3e-09 Score=99.69 Aligned_cols=141 Identities=21% Similarity=0.194 Sum_probs=90.3
Q ss_pred ceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCc
Q 009769 314 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (526)
Q Consensus 314 ~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D 393 (526)
..|-|.+-.+++...+.-..-.++||+|||.|.+|..+|.+ ..+++++|+++..++.+++++... ++ |++++.|
T Consensus 24 ~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~--~~-V~~~~~d 97 (201)
T PF05401_consen 24 SWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGL--PH-VEWIQAD 97 (201)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-
T ss_pred CHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC--CC-eEEEECc
Confidence 34445554444444444445578999999999999999987 468999999999999999988753 44 9999999
Q ss_pred cccccccCCCCCcEEEEcCCCCCCccccCCchhhccCC-HHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC------C
Q 009769 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR-LEDMEELKILQDELLDAASLLVKPGGVLVYSTCS------I 466 (526)
Q Consensus 394 ~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~-~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs------~ 466 (526)
+.++.+ .++||+|++ |..+. -.+ .+++. .++..+...|+|||.||+.+-. +
T Consensus 98 vp~~~P--~~~FDLIV~----SEVlY---------YL~~~~~L~-------~~l~~l~~~L~pgG~LV~g~~rd~~c~~w 155 (201)
T PF05401_consen 98 VPEFWP--EGRFDLIVL----SEVLY---------YLDDAEDLR-------AALDRLVAALAPGGHLVFGHARDANCRRW 155 (201)
T ss_dssp TTT-----SS-EEEEEE----ES-GG---------GSSSHHHHH-------HHHHHHHHTEEEEEEEEEEEE-HHHHHHT
T ss_pred CCCCCC--CCCeeEEEE----ehHhH---------cCCCHHHHH-------HHHHHHHHHhCCCCEEEEEEecCCccccc
Confidence 987653 478999986 33332 222 23333 3488899999999999986532 2
Q ss_pred ChhhhHHHHHHHHHhC
Q 009769 467 DPEENEERVEAFLLRH 482 (526)
Q Consensus 467 ~~~Ene~vv~~~l~~~ 482 (526)
...-..+.|...++++
T Consensus 156 gh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 156 GHAAGAETVLEMLQEH 171 (201)
T ss_dssp T-S--HHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHH
Confidence 2222445555666654
No 155
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.89 E-value=3.7e-08 Score=95.25 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=85.5
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~ 404 (526)
+...+...++.+|||+|||+|..+..++...+..++++++|+++..+..++++.. ...+++++.+|+.+... ..+.
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-~~~~ 106 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-EDNS 106 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-CCCc
Confidence 3444445578899999999999999999876433799999999999999998876 23347888999887652 2467
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
||+|++.-. +...+ +. ..+++.+.+.|+|||+++..+.+.
T Consensus 107 ~D~i~~~~~------~~~~~---------~~-------~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 107 FDAVTIAFG------LRNVT---------DI-------QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEEeee------eCCcc---------cH-------HHHHHHHHHHcCCCcEEEEEEecC
Confidence 999986311 11111 11 246899999999999999876553
No 156
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.88 E-value=2.4e-08 Score=96.69 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCC--------------CccEEEEcCccccc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLRTF 397 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~--------------~~~v~~~~~D~~~~ 397 (526)
.++.+|||+|||.|.-+..+|++ +..|+|+|+|+.+++.+.. ..++ ...|+++++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46789999999999999999985 5799999999999997633 2222 12478899999887
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
.....+.||.|+ |--| +.. ..+. .....+..+.++|||||++++.|-+.
T Consensus 107 ~~~~~~~fD~i~-D~~~-----~~~-------l~~~-------~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAADLGPVDAVY-DRAA-----LIA-------LPEE-------MRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CcccCCCcCEEE-echh-----hcc-------CCHH-------HHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 643335799885 3222 111 1111 12346899999999999877776553
No 157
>PRK01581 speE spermidine synthase; Validated
Probab=98.87 E-value=5.9e-08 Score=99.80 Aligned_cols=114 Identities=12% Similarity=0.180 Sum_probs=83.2
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH--H---HHcCC-CccEEEEcCccccccccCCCCCcE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET--A---KLHQV-NSVIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n--~---~~~g~-~~~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
..+||++|||.|+.+..+++. .+..+|+++|+++.+++.+++. + .+.+. +.+++++.+|+..+.....++||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 459999999999987777764 4457999999999999999962 1 12222 346999999999987655678999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
|++|.|-..... ...+ ...++++.+.+.|+|||+++....+
T Consensus 230 IIvDl~DP~~~~------------~~~L-----yT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFPDPATEL------------LSTL-----YTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCCCccccc------------hhhh-----hHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999976421000 0111 1246889999999999998866443
No 158
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.86 E-value=2.5e-08 Score=101.81 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=78.9
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC---cEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC---DKV 408 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~f---D~V 408 (526)
.++.+|||+|||+|.+|..+++.+....+++++|+|+.+++.+.+++......-.+..+++|+.+..... ..+ +.+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeE
Confidence 3567999999999999999998765357899999999999999998876432223677899987643221 222 333
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
++- +.|..|.+ .+++ ...+|+.+.+.|+|||.+++..-.
T Consensus 141 ~~~-~gs~~~~~----------~~~e-------~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 141 GFF-PGSTIGNF----------TPEE-------AVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEE-ecccccCC----------CHHH-------HHHHHHHHHHhcCCCCEEEEeccC
Confidence 221 11112221 2222 235799999999999999976543
No 159
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.3e-08 Score=94.87 Aligned_cols=126 Identities=27% Similarity=0.273 Sum_probs=89.8
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc------cC-CC
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NS-TV 403 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~------~~-~~ 403 (526)
+.+|..|+|+||+||+++..+++.++..+.|+|+|+.|-.. ..+ |.++++|++.-.. .. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 35789999999999999999999998888899999987432 344 7889999876432 11 23
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
.+|+|++|+..--+|.... +. .....+-...++-|..+|+|||.++ |.....++.+.+-+.+.++
T Consensus 111 ~~DvV~sD~ap~~~g~~~~--------Dh---~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSV--------DH---ARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred CcceEEecCCCCcCCCccc--------cH---HHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHHHHHHHHHh
Confidence 5799999976644555221 11 1222233446788899999999999 5666666666666666655
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.85 E-value=2.4e-08 Score=101.90 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc-CCCccEEEEc-Cccccccc---cCCCCCcE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIH-ADLRTFAD---NSTVKCDK 407 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~-g~~~~v~~~~-~D~~~~~~---~~~~~fD~ 407 (526)
++.+|||+|||+|+....++.... ..+++|+|+++..++.+++|++.+ ++.++|+++. .|...+.. ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 467999999999999988887654 579999999999999999999999 7987787754 34333221 12468999
Q ss_pred EEEcCCCCCC
Q 009769 408 VLLDAPCSGL 417 (526)
Q Consensus 408 Vl~D~Pcsg~ 417 (526)
|++|||+...
T Consensus 193 ivcNPPf~~s 202 (321)
T PRK11727 193 TLCNPPFHAS 202 (321)
T ss_pred EEeCCCCcCc
Confidence 9999999543
No 161
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.82 E-value=3e-08 Score=107.63 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=84.8
Q ss_pred chHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-
Q 009769 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA- 398 (526)
Q Consensus 320 ~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~- 398 (526)
.....+...+...++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.+++. .+...+++++++|+....
T Consensus 24 ~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 24 EERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDL 97 (475)
T ss_pred hhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEeccccccc
Confidence 33445556666667889999999999999999986 36899999999999876542 222234889999986422
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
+.....||.|++..+..- ....++ ..++.++.+.|||||++++...+
T Consensus 98 ~~~~~~fD~I~~~~~l~~-------------l~~~~~-------~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMY-------------LSDKEV-------ENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCCCCCEEEEehhhhHHh-------------CCHHHH-------HHHHHHHHHhcCCCeEEEEEecc
Confidence 122468999998655421 111112 35689999999999999876433
No 162
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.82 E-value=2.7e-08 Score=93.74 Aligned_cols=113 Identities=24% Similarity=0.317 Sum_probs=85.9
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
.++..|++.+ .+.+-.+|.|+|||||..|..++++.+ ...|+|+|-|+.|++.+++. +.+ +++..+|+.++.
T Consensus 17 RPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~ 88 (257)
T COG4106 17 RPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK 88 (257)
T ss_pred CcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC
Confidence 3444555543 445567999999999999999999965 78999999999999988543 333 789999999987
Q ss_pred ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 399 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+. ..+|+++.|+-. .|..+. -++|...+..|.|||.|...-
T Consensus 89 p~--~~~dllfaNAvl------------qWlpdH----------~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 89 PE--QPTDLLFANAVL------------QWLPDH----------PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CC--Cccchhhhhhhh------------hhcccc----------HHHHHHHHHhhCCCceEEEEC
Confidence 54 578999877654 343221 245888899999999998653
No 163
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.82 E-value=3e-07 Score=91.76 Aligned_cols=198 Identities=17% Similarity=0.136 Sum_probs=118.8
Q ss_pred hcChHHHHHHHHHhhC-HHHHHHHHHHcCCCCCeEE------EEcCCCCCC---HHHHHHHHhcCCCCceeccCCCceEE
Q 009769 227 YSHPVWMVRRWTKYLG-QEEAIKLMVWNNSDPSFSL------RANSRKGVT---RADLVMQLNLLKVPHELSLHLDEFIR 296 (526)
Q Consensus 227 ~s~P~w~~~~~~~~~g-~~~~~~~~~~~~~~~~~~l------Rvn~~k~~~---~~~~~~~L~~~g~~~~~~~~~~~~~~ 296 (526)
-.+|.++.+.+...+| ...+.+.++.+....+-.+ .+......+ .+++.+.|... .|+...|+.-..+.
T Consensus 15 ~~l~~~~~~~~~~~~g~~~~w~~~l~~lp~~~~~~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~l-~PWRKGPf~l~gi~ 93 (315)
T PF08003_consen 15 ETLPAQLAAWLERRHGDLPRWQEALEQLPDLEPSSVDLSDSVTIGSASDLSAEQRQQLEQLLKAL-MPWRKGPFSLFGIH 93 (315)
T ss_pred HHhHHHHHHHHHhccCCHHHHHHHHHHcCCCCCcEEecCCcEEeCCCCCCCHHHHHHHHHHHHhh-CCcccCCcccCCEe
Confidence 3456666665555666 3566667776655444333 222221122 34455555554 57777776554444
Q ss_pred eeCCcchhhccccccccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHH
Q 009769 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (526)
Q Consensus 297 ~~~~~~~~~~~~~~~~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~ 376 (526)
+.+. ..+ |--=..+...+..-.|.+|||+|||.|+.+..|+.. +...|+|+|.+...+...+-
T Consensus 94 IDtE----WrS-----------d~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 94 IDTE----WRS-----------DWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred eccc----ccc-----------cchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHH
Confidence 4322 111 111112333343446899999999999999999875 56789999999887766555
Q ss_pred HHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCC
Q 009769 377 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 456 (526)
Q Consensus 377 n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpG 456 (526)
..+-.|.+..+..+..-+.+++. .+.||.|++ .|++-++.+. ...|......|+||
T Consensus 157 i~~~lg~~~~~~~lplgvE~Lp~--~~~FDtVF~------MGVLYHrr~P----------------l~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 157 IKHFLGQDPPVFELPLGVEDLPN--LGAFDTVFS------MGVLYHRRSP----------------LDHLKQLKDSLRPG 212 (315)
T ss_pred HHHHhCCCccEEEcCcchhhccc--cCCcCEEEE------eeehhccCCH----------------HHHHHHHHHhhCCC
Confidence 44555555434444333444443 468999984 5676554322 13478888999999
Q ss_pred CEEEEEeCCC
Q 009769 457 GVLVYSTCSI 466 (526)
Q Consensus 457 G~lvystcs~ 466 (526)
|.||.-|-.+
T Consensus 213 GeLvLETlvi 222 (315)
T PF08003_consen 213 GELVLETLVI 222 (315)
T ss_pred CEEEEEEeee
Confidence 9999877543
No 164
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.82 E-value=3.3e-08 Score=96.08 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=82.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.+.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++...+.. .+++...|+.++......+||.|++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 4779999999999999988874 357999999999999999999888764 378888888776543346899998642
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
... . . .....+|..+.+.|+|||.+++++|.
T Consensus 121 ~l~------~------~----------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 VLE------H------V----------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HHH------h------C----------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 210 0 0 01235689999999999999988764
No 165
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.82 E-value=7.6e-10 Score=93.45 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=60.4
Q ss_pred EEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCcEEEEcCCCCC
Q 009769 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSG 416 (526)
Q Consensus 338 LDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg 416 (526)
||+|||+|..+..++... +..+++++|+|+.+++.+++++...+..+ ...+..+..+..... .++||.|++--.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~v--- 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNV--- 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-T---
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhh---
Confidence 799999999999999885 57899999999999999999998887654 334444433333222 258999986322
Q ss_pred CccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEE
Q 009769 417 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 459 (526)
Q Consensus 417 ~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~l 459 (526)
+..-+ + ...+|+++.++|||||.|
T Consensus 76 ---l~~l~---------~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 ---LHHLE---------D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---TS--S-----------------HHHHHHHHTTT-TSS-EE
T ss_pred ---Hhhhh---------h-------HHHHHHHHHHHcCCCCCC
Confidence 11111 1 235699999999999986
No 166
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.81 E-value=2.2e-08 Score=97.84 Aligned_cols=118 Identities=22% Similarity=0.295 Sum_probs=85.1
Q ss_pred eccchHHHHHHhcCC---CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCc
Q 009769 317 VQDESAGLVVAVVDP---QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (526)
Q Consensus 317 iQd~~s~l~~~~l~~---~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D 393 (526)
+|...+..+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. . ++.++.+|
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d 88 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----E-NVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecc
Confidence 455544444444332 334689999999999999999874 46789999999999998887654 2 36788899
Q ss_pred cccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 394 ~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+.+... ..++||+|+++.... |..+ ...+|.++.+.|+|||.+++++
T Consensus 89 ~~~~~~-~~~~fD~vi~~~~l~------------~~~~----------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 89 AEKLPL-EDSSFDLIVSNLALQ------------WCDD----------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhCCC-CCCceeEEEEhhhhh------------hccC----------HHHHHHHHHHHcCCCcEEEEEe
Confidence 887652 346799999754331 1111 1246899999999999999875
No 167
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.81 E-value=1.3e-08 Score=102.71 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=75.4
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCC-
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV- 403 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~- 403 (526)
+...+.++||..+||++||.||.|..+++.+++.++|+|+|.++.+++.+++++.. .++++++++|+.++......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 34556678899999999999999999999876679999999999999999988765 34699999999887544322
Q ss_pred --CCcEEEEcCCCCCC
Q 009769 404 --KCDKVLLDAPCSGL 417 (526)
Q Consensus 404 --~fD~Vl~D~Pcsg~ 417 (526)
.||.|++|.-+|+.
T Consensus 88 ~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 88 LGKVDGILLDLGVSSP 103 (296)
T ss_pred CCccCEEEECCCcccc
Confidence 79999999887754
No 168
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=2.3e-08 Score=101.38 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=78.6
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
++......++..+.+.++++|||+|||+|..|..++.. ..+|+|+|+++.+++.+++++...+...+++++++|+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 34445566677778889999999999999999999885 468999999999999999999888755569999999987
Q ss_pred ccccCCCCCcEEEEcCCCCC
Q 009769 397 FADNSTVKCDKVLLDAPCSG 416 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg 416 (526)
... ..||.|+.|+|+..
T Consensus 97 ~~~---~~~d~VvaNlPY~I 113 (294)
T PTZ00338 97 TEF---PYFDVCVANVPYQI 113 (294)
T ss_pred hcc---cccCEEEecCCccc
Confidence 542 46899999999953
No 169
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.80 E-value=2.5e-07 Score=88.38 Aligned_cols=141 Identities=24% Similarity=0.282 Sum_probs=96.2
Q ss_pred hHHHHHHhc------CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcc
Q 009769 321 SAGLVVAVV------DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (526)
Q Consensus 321 ~s~l~~~~l------~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~ 394 (526)
-|.|.+.++ .+++|.+||-+|+++|+.-.|++...+..|.|+|+|.|+...+.+-..+++- +| |-.+.+|+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~N-IiPIl~DA 131 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PN-IIPILEDA 131 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TT-EEEEES-T
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--Cc-eeeeeccC
Confidence 456666553 4678999999999999999999999988999999999999999888777764 34 77788999
Q ss_pred ccccccC--CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHHccCcCCCEEEEEeC--CC-Ch
Q 009769 395 RTFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYSTC--SI-DP 468 (526)
Q Consensus 395 ~~~~~~~--~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~-lL~~a~~~LkpGG~lvystc--s~-~~ 468 (526)
+...... -+.+|+|+.|..-.. |.+ ++.++..+||+||.++.+.- |+ ..
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVaQp~-------------------------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t 186 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVAQPD-------------------------QARIAALNARHFLKPGGHLIISIKARSIDST 186 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-SSTT-------------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS
T ss_pred CChHHhhcccccccEEEecCCChH-------------------------HHHHHHHHHHhhccCCcEEEEEEecCcccCc
Confidence 8765432 458999999987621 333 46778889999999887642 12 22
Q ss_pred hhhHHHHHHHHHhC--CCCeEec
Q 009769 469 EENEERVEAFLLRH--PEFSIDP 489 (526)
Q Consensus 469 ~Ene~vv~~~l~~~--~~~~~~~ 489 (526)
.+.+++++.-.++. .+|++..
T Consensus 187 ~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 187 ADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp SSHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCChhe
Confidence 23344544444332 2466543
No 170
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=5.9e-08 Score=89.35 Aligned_cols=126 Identities=24% Similarity=0.310 Sum_probs=89.5
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC-ccccccc-------cCC
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD-------NST 402 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~-D~~~~~~-------~~~ 402 (526)
+.|+++|||+||+||.++....++.++.|.|.++|+-. -..+.+ ++++++ |+++... ...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 35799999999999999999999998999999999843 122333 445555 7765421 124
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
.++|+||.|..--.+|+- ..+-..+.++=...|.-|..+++|+|.++ |-+...+.+...++-+..+
T Consensus 135 r~VdvVlSDMapnaTGvr-----------~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVR-----------IRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred CcccEEEeccCCCCcCcc-----------hhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchHHHHHHHHHH
Confidence 679999999777677762 22334445555667788899999999999 7766655555555555543
No 171
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.78 E-value=3.7e-08 Score=101.49 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++... . .++++.+|+.+... ..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~---~-~i~~i~gD~e~lp~-~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---K-ECKIIEGDAEDLPF-PTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc---c-CCeEEeccHHhCCC-CCCceeEEEEc
Confidence 4678999999999999999988754 47999999999999999987642 2 36788999887542 24679999874
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
... ...++ ...+|+++.+.|||||++++.
T Consensus 186 ~~L------~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 186 GSI------EYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred Chh------hhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 221 11111 124699999999999998765
No 172
>PLN02366 spermidine synthase
Probab=98.78 E-value=7e-08 Score=98.38 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC--C-CccEEEEcCccccccccC-CCCCcE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS-TVKCDK 407 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g--~-~~~v~~~~~D~~~~~~~~-~~~fD~ 407 (526)
...++||++|||.|+....+++. .+..+|+.+|+++..++.+++.+...+ + +.+++++.+|++.+.... .++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34679999999999999999875 445789999999999999999876542 2 347999999998876543 468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
|++|.+... |. ...+ ...++++.+.+.|+|||+++.-.-|
T Consensus 169 Ii~D~~dp~-~~------------~~~L-----~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 169 IIVDSSDPV-GP------------AQEL-----FEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EEEcCCCCC-Cc------------hhhh-----hHHHHHHHHHHhcCCCcEEEECcCC
Confidence 999976421 11 0111 2346789999999999999854333
No 173
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.3e-08 Score=107.05 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=88.2
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CC
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV 403 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~ 403 (526)
+-+.++...+..++|+|||||.+++.+|+. ..+|+++|+++..++.|+.|++.+|++| .+++++-+.+..... ..
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc
Confidence 445677888899999999999999999975 5799999999999999999999999997 899999665544322 11
Q ss_pred ---CCc-EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChh
Q 009769 404 ---KCD-KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 469 (526)
Q Consensus 404 ---~fD-~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~ 469 (526)
.-+ ++++|||-.|.-. . +-.+.+..+.--+++|.+|..+..
T Consensus 451 ~~~~~~~v~iiDPpR~Glh~------------------------~-~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPRKGLHM------------------------K-VIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCCCceEEEECCCcccccH------------------------H-HHHHHHhccCccceEEEEcCHHHh
Confidence 234 7889999876322 1 222333334345899999987764
No 174
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.75 E-value=4.8e-08 Score=98.22 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=76.8
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCC--cEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
+..+.++...+. .++.+|||+|||+|..+..++...+.. ..++|+|+|+.+++.++++. .+ +.+..+|+.+
T Consensus 72 ~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~ 144 (272)
T PRK11088 72 DAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHR 144 (272)
T ss_pred HHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeeccc
Confidence 333333444332 355789999999999999998875432 47999999999999987642 23 6788889887
Q ss_pred ccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 397 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++. ..+.||.|+..- + | ..+.+..+.|||||+++..+-
T Consensus 145 lp~-~~~sfD~I~~~~--~--------~-------------------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 145 LPF-ADQSLDAIIRIY--A--------P-------------------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred CCC-cCCceeEEEEec--C--------C-------------------CCHHHHHhhccCCCEEEEEeC
Confidence 652 346899998421 0 1 124667889999999997653
No 175
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=9.8e-08 Score=92.75 Aligned_cols=109 Identities=11% Similarity=0.090 Sum_probs=76.4
Q ss_pred CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCC--------------CccEEEEcCccc
Q 009769 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLR 395 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~--------------~~~v~~~~~D~~ 395 (526)
.+.++.+|||+|||.|.-+..+|++ +..|+|+|+|+..++.+.+ +.++ ...|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456789999999999999999984 5799999999999998642 2222 234888999999
Q ss_pred cccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 396 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 396 ~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++.......||.|+- --| +.. ..+ ......+..+.++|+|||++++.+-
T Consensus 108 ~l~~~~~~~fd~v~D-~~~-----~~~-------l~~-------~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 108 ALTAADLADVDAVYD-RAA-----LIA-------LPE-------EMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred CCCcccCCCeeEEEe-hHh-----Hhh-------CCH-------HHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 876443357888862 111 111 111 1234568999999999997555433
No 176
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.71 E-value=2e-07 Score=89.77 Aligned_cols=128 Identities=14% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..++.+|||+|||+|..+..++...+ ..+++|+|+|+.+++.++++.. + +.+.++|+.+. ...++||+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~-----~-~~~~~~d~~~~--~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP-----N-INIIQGSLFDP--FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC-----C-CcEEEeeccCC--CCCCCEEEEEE
Confidence 45677999999999999999988653 5799999999999999987642 2 55778888762 23568999985
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC--------CChhhh----HHHHHHH
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS--------IDPEEN----EERVEAF 478 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs--------~~~~En----e~vv~~~ 478 (526)
.. ++.+ .++.++ ..+++++.+.+ ++.++.+.+- ....+. -+....+
T Consensus 112 ~~------vL~h-------l~p~~~-------~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~ 169 (204)
T TIGR03587 112 KG------VLIH-------INPDNL-------PTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEM 169 (204)
T ss_pred CC------hhhh-------CCHHHH-------HHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHH
Confidence 32 2211 112222 34577777776 4566654331 111110 1235677
Q ss_pred HHhCCCCeEec
Q 009769 479 LLRHPEFSIDP 489 (526)
Q Consensus 479 l~~~~~~~~~~ 489 (526)
++..|+++++.
T Consensus 170 ~~~~~~l~~~~ 180 (204)
T TIGR03587 170 MDRYPDLKLVD 180 (204)
T ss_pred HHhCCcceeee
Confidence 88888888765
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.71 E-value=2.7e-07 Score=104.50 Aligned_cols=122 Identities=15% Similarity=0.069 Sum_probs=87.1
Q ss_pred HhcCC-CCCCEEEEeCCchhHHHHHHHHHcc-----------------------------------------CCcEEEEE
Q 009769 327 AVVDP-QPGQSIVDCCAAPGGKTLYMASCLS-----------------------------------------GQGLVYAI 364 (526)
Q Consensus 327 ~~l~~-~~g~~VLDl~aG~G~~t~~la~~~~-----------------------------------------~~~~v~av 364 (526)
.+.+- +++..++|.+||+|++.+..|.... ...+|+|+
T Consensus 183 ~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~ 262 (702)
T PRK11783 183 LRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS 262 (702)
T ss_pred HHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE
Confidence 34443 5688999999999999998876311 12379999
Q ss_pred cCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH
Q 009769 365 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443 (526)
Q Consensus 365 D~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~ 443 (526)
|+++.+++.+++|++.+|+.+.+++.++|+.++.... .+.||.|++|||+.. +.. .. ..+..++.
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~-----r~~------~~---~~l~~lY~ 328 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGE-----RLG------EE---PALIALYS 328 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcC-----ccC------ch---HHHHHHHH
Confidence 9999999999999999999888999999998875432 256999999999942 100 11 22334444
Q ss_pred HHHHHHHccCcCCCEEEEEe
Q 009769 444 ELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 444 ~lL~~a~~~LkpGG~lvyst 463 (526)
.+- ..++...+|+.++..|
T Consensus 329 ~lg-~~lk~~~~g~~~~llt 347 (702)
T PRK11783 329 QLG-RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHH-HHHHHhCCCCeEEEEe
Confidence 433 3444445788876554
No 178
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.69 E-value=1.1e-07 Score=95.24 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=76.8
Q ss_pred CCCCEEEEeCCchhH----HHHHHHHHccC----CcEEEEEcCChhHHHHHHHHHH----HcC-----------------
Q 009769 332 QPGQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAK----LHQ----------------- 382 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~----~t~~la~~~~~----~~~v~avD~s~~~l~~a~~n~~----~~g----------------- 382 (526)
.++.+|||+|||+|- .++.+++.... ..+|+|+|+|+.+++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 45555554432 4699999999999999987531 001
Q ss_pred -----CCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 383 -----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 383 -----~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
+.+.|++.+.|+.+... ..++||+|++ .+ ++.. .+. ..+.+++.+..+.|+|||
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c----rn--vl~y-------f~~-------~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFC----RN--VLIY-------FDE-------PTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe----ch--hHHh-------CCH-------HHHHHHHHHHHHHhCCCe
Confidence 12357888999887643 2468999985 21 1111 111 235567999999999999
Q ss_pred EEEEEeC
Q 009769 458 VLVYSTC 464 (526)
Q Consensus 458 ~lvystc 464 (526)
.|+....
T Consensus 237 ~L~lg~~ 243 (264)
T smart00138 237 YLFLGHS 243 (264)
T ss_pred EEEEECc
Confidence 9997543
No 179
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.68 E-value=1.6e-08 Score=95.32 Aligned_cols=87 Identities=29% Similarity=0.361 Sum_probs=75.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCcEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 409 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---~~~fD~Vl 409 (526)
..+.|+|.+||-||-|++.|.. ...|+++|++|..+..++.|++-+|++++|+++++|+.+..... ...+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 3568999999999999999875 46899999999999999999999999999999999998875432 23577999
Q ss_pred EcCCCCCCccccC
Q 009769 410 LDAPCSGLGVLSK 422 (526)
Q Consensus 410 ~D~Pcsg~G~l~~ 422 (526)
.-||.+|.|..+.
T Consensus 171 ~sppwggp~y~~~ 183 (263)
T KOG2730|consen 171 LSPPWGGPSYLRA 183 (263)
T ss_pred cCCCCCCcchhhh
Confidence 9999999887554
No 180
>PLN02823 spermine synthase
Probab=98.68 E-value=5.3e-07 Score=92.95 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=92.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC---CCccEEEEcCccccccccCCCCCcEEEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g---~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..+||.+|+|.|+.+..+++. .+..+|+++|+++..++.+++.+...+ -+.+++++.+|++.+.....++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 458999999999999888875 335689999999999999999876432 1356999999999987655678999999
Q ss_pred cCCCCC-CccccCCchhhccCCHHHHHHHHHHHHHHHH-HHHccCcCCCEEEEEeCCC----ChhhhHHHHHHHHHhCCC
Q 009769 411 DAPCSG-LGVLSKRADLRWNRRLEDMEELKILQDELLD-AASLLVKPGGVLVYSTCSI----DPEENEERVEAFLLRHPE 484 (526)
Q Consensus 411 D~Pcsg-~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~-~a~~~LkpGG~lvystcs~----~~~Ene~vv~~~l~~~~~ 484 (526)
|.+-.. .|. + ..+ ...++++ .+.+.|+|||.++....+. +++....++..+-+-.+.
T Consensus 183 D~~dp~~~~~----~--------~~L-----yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 183 DLADPVEGGP----C--------YQL-----YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred cCCCccccCc----c--------hhh-----ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 964311 111 0 000 1235677 7889999999988654332 233334444444444554
Q ss_pred C
Q 009769 485 F 485 (526)
Q Consensus 485 ~ 485 (526)
.
T Consensus 246 v 246 (336)
T PLN02823 246 V 246 (336)
T ss_pred E
Confidence 3
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.68 E-value=1.9e-07 Score=101.72 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=104.0
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCcEEEEc
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLD 411 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D 411 (526)
.+..+||+|||.|.+++++|.. .++..++|+|++...+..+.+.++..++.| +.+++.|+..+.... ...+|.|.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4678999999999999999997 567899999999999999999999999987 778888876544333 4679999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEec
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 489 (526)
-|. .|.+..+.-.++ .|..+|+...+.|||||.+.+.|-. ++.-+.+...+..++.|+...
T Consensus 425 FPD------------PWpKkrh~krRl--~~~~fl~~~~~~Lk~gG~i~~~TD~---~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 425 FPD------------PWIKNKQKKKRI--FNKERLKILQDKLKDNGNLVFASDI---ENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred CCC------------CCCCCCCccccc--cCHHHHHHHHHhcCCCCEEEEEcCC---HHHHHHHHHHHHhCCCeEecc
Confidence 887 243322222222 4567899999999999999987642 333333445566777777653
No 182
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.2e-07 Score=85.35 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=100.1
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
...++|+|||+|..+..+++...++....+.|++|++++...+.++.+++. +.+++.|...-... +++|+++.|||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~--~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN--ESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc--CCccEEEECCC
Confidence 568999999999999999999988889999999999999999999999886 67889998776643 78999999999
Q ss_pred CCCC--c-cccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhC
Q 009769 414 CSGL--G-VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482 (526)
Q Consensus 414 csg~--G-~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 482 (526)
+--. + +-...-+..|.-.. ...+.-.++|...-.+|.|.|.++..+|.-+. .+.|-++++..
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~----~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~---p~ei~k~l~~~ 184 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGK----DGREVTDRLLPQVPDILSPRGVFYLVALRANK---PKEILKILEKK 184 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCc----chHHHHHHHHhhhhhhcCcCceEEeeehhhcC---HHHHHHHHhhc
Confidence 8311 0 00111122343111 12233456788889999999999887775332 22233466543
No 183
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.66 E-value=1.7e-08 Score=100.83 Aligned_cols=169 Identities=23% Similarity=0.240 Sum_probs=117.6
Q ss_pred cceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHH-------HHHHHHHHcCCCc
Q 009769 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-------ILNETAKLHQVNS 385 (526)
Q Consensus 313 G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~-------~a~~n~~~~g~~~ 385 (526)
|.-.+-.+-|.+.+....++||+.|+|.+.|||++...+|.. ++.|+|.||+-.+++ ..+.|++++|...
T Consensus 188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~ 264 (421)
T KOG2671|consen 188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS 264 (421)
T ss_pred CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcc
Confidence 444444455666777777899999999999999999988875 589999999988877 4688999999653
Q ss_pred c-EEEEcCccccccccCCCCCcEEEEcCCCCCC-c--cccCCchhhcc--------CCHHHHHHHHHHHHHHHHHHHccC
Q 009769 386 V-IRTIHADLRTFADNSTVKCDKVLLDAPCSGL-G--VLSKRADLRWN--------RRLEDMEELKILQDELLDAASLLV 453 (526)
Q Consensus 386 ~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~-G--~l~~~p~~~~~--------~~~~~l~~l~~~q~~lL~~a~~~L 453 (526)
. +.+..+|....+......||.|++|||+.=- | .+.++..++-. ........+..+..++|.-+++.|
T Consensus 265 ~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L 344 (421)
T KOG2671|consen 265 QFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL 344 (421)
T ss_pred hhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence 2 4567888887765556789999999998311 1 11111111110 011233456677788999999999
Q ss_pred cCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEe
Q 009769 454 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 488 (526)
Q Consensus 454 kpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 488 (526)
..||++|+ +.|.-+|+.....+-.||.+.+.
T Consensus 345 ~~ggrlv~----w~p~~~e~~~~~~~P~h~~lsl~ 375 (421)
T KOG2671|consen 345 VDGGRLVF----WLPTITEEYGEDDIPSHPYLSLI 375 (421)
T ss_pred hcCceEEE----ecCchhhccCcccCCCCcchhhh
Confidence 99999994 33355555555556666655543
No 184
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.66 E-value=8.8e-08 Score=95.61 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=74.1
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
+.......++..++..++++|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .. +++++++|+.+
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEecccc
Confidence 33445566677778888999999999999999999986 36899999999999999988765 33 48999999987
Q ss_pred ccccCCCCCcEEEEcCCCC
Q 009769 397 FADNSTVKCDKVLLDAPCS 415 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcs 415 (526)
+.. ..||.|+.++|+.
T Consensus 87 ~~~---~~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDL---PEFNKVVSNLPYQ 102 (258)
T ss_pred CCc---hhceEEEEcCCcc
Confidence 652 3489999999984
No 185
>PRK10742 putative methyltransferase; Provisional
Probab=98.66 E-value=9.7e-08 Score=93.17 Aligned_cols=92 Identities=21% Similarity=0.158 Sum_probs=79.1
Q ss_pred hHHHHHHhcCCCCCC--EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc------CC--CccEEEE
Q 009769 321 SAGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------QV--NSVIRTI 390 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~--~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~------g~--~~~v~~~ 390 (526)
..+.++..+++++|. +|||++||.|..++.++.+ +++|+++|.++.....+++++++. +. ..+++++
T Consensus 74 ~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred CccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 346778888888988 9999999999999999986 467999999999999999999995 32 2458999
Q ss_pred cCccccccccCCCCCcEEEEcCCCC
Q 009769 391 HADLRTFADNSTVKCDKVLLDAPCS 415 (526)
Q Consensus 391 ~~D~~~~~~~~~~~fD~Vl~D~Pcs 415 (526)
++|+.++.......||+|++|||+.
T Consensus 151 ~~da~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEECCCCC
Confidence 9999988765556899999999994
No 186
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.66 E-value=9.6e-08 Score=103.55 Aligned_cols=170 Identities=23% Similarity=0.256 Sum_probs=116.9
Q ss_pred ccceeeccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccC---CcEEEEEcCChhHHHHHHHHHHHcCCCccEE
Q 009769 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIR 388 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~ 388 (526)
.|.++.....+.+++.++.+++..+|+|.|||+|++.+..+..+.. ...++|.|+++.....++.|+-.+|+...+.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 3788888889999999999988999999999999999988887753 3789999999999999999999999974356
Q ss_pred EEcCcccccccc----CCCCCcEEEEcCCCCCCccccCC-c-hhhccCCHHHHHHHH-HHHHHHHHHHHccCcCCCEEEE
Q 009769 389 TIHADLRTFADN----STVKCDKVLLDAPCSGLGVLSKR-A-DLRWNRRLEDMEELK-ILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 389 ~~~~D~~~~~~~----~~~~fD~Vl~D~Pcsg~G~l~~~-p-~~~~~~~~~~l~~l~-~~q~~lL~~a~~~LkpGG~lvy 461 (526)
..++|...-+.. ...+||.|+.+||+|+.+...-. . +..|+.......... .-...++.+....|+|||+...
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 667776554432 24679999999999865443221 0 101110000000000 0013578999999999885443
Q ss_pred E--eCCCChhhhHHHHHHHHHh
Q 009769 462 S--TCSIDPEENEERVEAFLLR 481 (526)
Q Consensus 462 s--tcs~~~~Ene~vv~~~l~~ 481 (526)
. .-.+...-++..+...+-.
T Consensus 325 vl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 325 VLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EecCCcCcCCCchHHHHHHHHh
Confidence 2 2234444457666666655
No 187
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.66 E-value=2.1e-07 Score=102.30 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=102.6
Q ss_pred ccceeeccchHHHHHHhcCCC-------CCCEEEEeCCchhHHHHHHHHHccC-------CcEEEEEcCChhHHHHHHHH
Q 009769 312 EGLCAVQDESAGLVVAVVDPQ-------PGQSIVDCCAAPGGKTLYMASCLSG-------QGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~-------~g~~VLDl~aG~G~~t~~la~~~~~-------~~~v~avD~s~~~l~~a~~n 377 (526)
.|.|+....-+.+++..+... .+.+|||.|||+|++.+.++..+.. ...++++|+++..+..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 355666555566666554221 3458999999999999999887631 25789999999999999999
Q ss_pred HHHcCCCccEEEEcCcccccc----ccCCCCCcEEEEcCCCCCCccccCCch-------hhccCCHHH----HH------
Q 009769 378 AKLHQVNSVIRTIHADLRTFA----DNSTVKCDKVLLDAPCSGLGVLSKRAD-------LRWNRRLED----ME------ 436 (526)
Q Consensus 378 ~~~~g~~~~v~~~~~D~~~~~----~~~~~~fD~Vl~D~Pcsg~G~l~~~p~-------~~~~~~~~~----l~------ 436 (526)
+..++..+ +.+.+.|..... ....+.||+|+.|||+.......+.-. ..+...... +.
T Consensus 83 l~~~~~~~-~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (524)
T TIGR02987 83 LGEFALLE-INVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYS 161 (524)
T ss_pred HhhcCCCC-ceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchh
Confidence 98876222 445555544321 112357999999999965432111000 000000000 00
Q ss_pred -------HHHHHHHHH-HHHHHccCcCCCEEEEEeCC-CChhhhHHHHHHHHHhC
Q 009769 437 -------ELKILQDEL-LDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLRH 482 (526)
Q Consensus 437 -------~l~~~q~~l-L~~a~~~LkpGG~lvystcs-~~~~Ene~vv~~~l~~~ 482 (526)
.....+..+ ++.+.++|++||++.+.+-+ +........+.+++-.+
T Consensus 162 ~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 162 DPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 011233334 46789999999999987654 33334444555555544
No 188
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.65 E-value=8.1e-08 Score=96.62 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=71.5
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
++......++..+++.++++|||+|||+|..|..++.. ..+|+|+|+++.+++.+++++.. . +++++++|+.+
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~---~~~v~avE~d~~~~~~~~~~~~~---~-~v~~i~~D~~~ 98 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER---AAKVTAVEIDRDLAPILAETFAE---D-NLTIIEGDALK 98 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh---CCcEEEEECCHHHHHHHHHhhcc---C-ceEEEEChhhc
Confidence 33334455666777888999999999999999999987 24899999999999999887642 3 48999999988
Q ss_pred ccccCCCCCcEEEEcCCCC
Q 009769 397 FADNSTVKCDKVLLDAPCS 415 (526)
Q Consensus 397 ~~~~~~~~fD~Vl~D~Pcs 415 (526)
+... ...+|.|+.|+|+.
T Consensus 99 ~~~~-~~~~~~vv~NlPY~ 116 (272)
T PRK00274 99 VDLS-ELQPLKVVANLPYN 116 (272)
T ss_pred CCHH-HcCcceEEEeCCcc
Confidence 6532 11159999999984
No 189
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.65 E-value=1.9e-07 Score=88.20 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=98.4
Q ss_pred ccceeeccchHHHHHHhcCCCC--CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEE
Q 009769 312 EGLCAVQDESAGLVVAVVDPQP--GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~~l~~~~--g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~ 389 (526)
.-...||.+-+.-..+++.+++ ..-|||+|||+|..+..+.+- ....+++|+|+.|++.+.+ +.+. + .+
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~e--g--dl 97 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--RELE--G--DL 97 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhhh--c--Ce
Confidence 4456789888888888887766 568999999999988777652 4678999999999999986 2322 1 35
Q ss_pred EcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCH-HHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh
Q 009769 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRL-EDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468 (526)
Q Consensus 390 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~-~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~ 468 (526)
+.+|+-+-.+..++.||.+|.= |. +.|.-+. .....-.+.-..++...+..|++|++.|+. +.
T Consensus 98 il~DMG~GlpfrpGtFDg~ISI---SA---------vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q----fY 161 (270)
T KOG1541|consen 98 ILCDMGEGLPFRPGTFDGVISI---SA---------VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ----FY 161 (270)
T ss_pred eeeecCCCCCCCCCccceEEEe---ee---------eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE----ec
Confidence 6778776666667899998741 11 1121100 000000111235688889999999999864 34
Q ss_pred hhhHHHHHHHHHh
Q 009769 469 EENEERVEAFLLR 481 (526)
Q Consensus 469 ~Ene~vv~~~l~~ 481 (526)
.||+++++-++.+
T Consensus 162 pen~~q~d~i~~~ 174 (270)
T KOG1541|consen 162 PENEAQIDMIMQQ 174 (270)
T ss_pred ccchHHHHHHHHH
Confidence 5788887766654
No 190
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.64 E-value=3.3e-08 Score=93.16 Aligned_cols=107 Identities=29% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
++.+|||+||+|||++..++++.+..++|+|+|+.+. ....+ +..+++|.++.... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcccccc
Confidence 4589999999999999999987645689999999886 12233 66777777653211 125
Q ss_pred CCcEEEEcC--CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 404 KCDKVLLDA--PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 404 ~fD~Vl~D~--Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
.||+|++|. +++|.. ..+ -..-.++....|.-|..+|+|||.+|.-+.
T Consensus 91 ~~dlv~~D~~~~~~g~~----------~~d---~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDR----------NID---EFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SESEEEE-------SSH----------HSS---HHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CcceeccccccCCCCch----------hhH---HHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 899999997 343321 111 122224445556788899999999885443
No 191
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.60 E-value=1.8e-07 Score=89.26 Aligned_cols=141 Identities=24% Similarity=0.283 Sum_probs=106.7
Q ss_pred hHHHHHHhc------CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcc
Q 009769 321 SAGLVVAVV------DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (526)
Q Consensus 321 ~s~l~~~~l------~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~ 394 (526)
-|.|++.++ .++||.+||=+||++|..-.|++...++.+.|+|+|.|...=+.+...+++- +| |..+..|+
T Consensus 138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tN-iiPIiEDA 214 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TN-IIPIIEDA 214 (317)
T ss_pred HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CC-ceeeeccC
Confidence 456666554 3689999999999999999999999999999999999998888777766653 34 66778899
Q ss_pred ccccccC--CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHHccCcCCCEEEEE---eCCCCh
Q 009769 395 RTFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYS---TCSIDP 468 (526)
Q Consensus 395 ~~~~~~~--~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~-lL~~a~~~LkpGG~lvys---tcs~~~ 468 (526)
+...+.. -..+|+|+.|.+-+ | |.+ +.-+|..+||+||.+|.| .|+-..
T Consensus 215 rhP~KYRmlVgmVDvIFaDvaqp---------d----------------q~RivaLNA~~FLk~gGhfvisikancidst 269 (317)
T KOG1596|consen 215 RHPAKYRMLVGMVDVIFADVAQP---------D----------------QARIVALNAQYFLKNGGHFVISIKANCIDST 269 (317)
T ss_pred CCchheeeeeeeEEEEeccCCCc---------h----------------hhhhhhhhhhhhhccCCeEEEEEeccccccc
Confidence 8865432 34789999998863 1 222 346788999999999976 687777
Q ss_pred hhhHHHHHHHHHhCCCCeEec
Q 009769 469 EENEERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 469 ~Ene~vv~~~l~~~~~~~~~~ 489 (526)
..+|.+++.-.+....-++.|
T Consensus 270 v~ae~vFa~Ev~klqee~lkP 290 (317)
T KOG1596|consen 270 VFAEAVFAAEVKKLQEEQLKP 290 (317)
T ss_pred ccHHHHHHHHHHHHHHhccCc
Confidence 888888776665543333333
No 192
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.60 E-value=4e-07 Score=88.78 Aligned_cols=74 Identities=22% Similarity=0.150 Sum_probs=61.2
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..++.+|||+|||+|..+..+++. ..+++++|+|+.+++.+++++...+..+++.+..+|... ..+.||+|++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~ 133 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVC 133 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEE
Confidence 356789999999999999999875 357999999999999999999988875568888888432 2367999986
Q ss_pred c
Q 009769 411 D 411 (526)
Q Consensus 411 D 411 (526)
.
T Consensus 134 ~ 134 (230)
T PRK07580 134 L 134 (230)
T ss_pred c
Confidence 3
No 193
>PRK06202 hypothetical protein; Provisional
Probab=98.59 E-value=5e-07 Score=88.59 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHcc---CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~---~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~f 405 (526)
+...++.+|||+|||+|..+..++.... ...+|+|+|+|+.+++.++++....++ ++...|+..+.. .+++|
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~-~~~~f 130 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA-EGERF 130 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc-cCCCc
Confidence 3345678999999999999998887542 235999999999999999887655443 333444333322 24689
Q ss_pred cEEEEc
Q 009769 406 DKVLLD 411 (526)
Q Consensus 406 D~Vl~D 411 (526)
|+|++.
T Consensus 131 D~V~~~ 136 (232)
T PRK06202 131 DVVTSN 136 (232)
T ss_pred cEEEEC
Confidence 999974
No 194
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=8.5e-08 Score=84.78 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
-+|..++|+|||.|..+++.+ |.+...|+|+|++++.++...+|++...+. +.+.++|..+.... .+.||.+++|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEEec
Confidence 368899999999999995554 455679999999999999999999999886 57899999886543 4789999999
Q ss_pred CCC
Q 009769 412 APC 414 (526)
Q Consensus 412 ~Pc 414 (526)
||.
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 998
No 195
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.56 E-value=2.5e-07 Score=84.50 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=73.7
Q ss_pred hHHHHHHhcC-CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009769 321 SAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (526)
Q Consensus 321 ~s~l~~~~l~-~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~ 399 (526)
-+.++..+.. ..++.+|||+|||+|..+..++.. ..+++++|+++.+++. .+ +.....+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~- 73 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RN-VVFDNFDAQDPP- 73 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TT-SEEEEEECHTHH-
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hh-hhhhhhhhhhhh-
Confidence 3445555554 467889999999999999999764 3499999999999987 11 222222222221
Q ss_pred cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 400 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 400 ~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
...+.||.|++. .++..-++ ...+|+.+.++|||||.++.++-..
T Consensus 74 ~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 FPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp CHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 124689999964 12222221 1356999999999999999887543
No 196
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.50 E-value=1.1e-06 Score=84.33 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC-cc-------------------------
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV------------------------- 386 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~-~~------------------------- 386 (526)
.+..+||+||.+|..|+++|..++ ...|+|+||++..++.|+++++..--. ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 356899999999999999999876 468999999999999999987653210 00
Q ss_pred ---------------EEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHc
Q 009769 387 ---------------IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (526)
Q Consensus 387 ---------------v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~ 451 (526)
..+...|+. ......||.|++ -+ +.+.-.+.| ..+.+. .++..+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl---~~~~~~fDiIlc----LS---iTkWIHLNw--gD~GL~-------~ff~kis~ 197 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL---DMIQPEFDIILC----LS---ITKWIHLNW--GDDGLR-------RFFRKISS 197 (288)
T ss_pred ccccCCcchhcccccEEEecchhh---hhccccccEEEE----EE---eeeeEeccc--ccHHHH-------HHHHHHHH
Confidence 001111111 112357999985 21 223333333 344444 45999999
Q ss_pred cCcCCCEEEEEeCCCChhhhHHHHH
Q 009769 452 LVKPGGVLVYSTCSIDPEENEERVE 476 (526)
Q Consensus 452 ~LkpGG~lvystcs~~~~Ene~vv~ 476 (526)
+|.|||+||.----+..-++-+...
T Consensus 198 ll~pgGiLvvEPQpWksY~kaar~~ 222 (288)
T KOG2899|consen 198 LLHPGGILVVEPQPWKSYKKAARRS 222 (288)
T ss_pred hhCcCcEEEEcCCchHHHHHHHHHH
Confidence 9999999997655555444444333
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.2e-07 Score=83.89 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=84.8
Q ss_pred HhcC--CCCCCEEEEeCCchhHHHHHHHHHccCCcEE-EEEcCChhHHHHHHHHHHHcCC---------CccEEEEcCcc
Q 009769 327 AVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQV---------NSVIRTIHADL 394 (526)
Q Consensus 327 ~~l~--~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v-~avD~s~~~l~~a~~n~~~~g~---------~~~v~~~~~D~ 394 (526)
..|. ++||-..||+|+|+|..|..++.+++..|.+ ++||..++-++..++|+.+.-- ...+.++.+|.
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 3444 7899999999999999999999888776665 9999999999999999887541 13467888999
Q ss_pred ccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 395 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 395 ~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+..... ..+||+|.+-+..+ ++.+.....|++||+|+.
T Consensus 154 r~g~~e-~a~YDaIhvGAaa~----------------------------~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 154 RKGYAE-QAPYDAIHVGAAAS----------------------------ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cccCCc-cCCcceEEEccCcc----------------------------ccHHHHHHhhccCCeEEE
Confidence 876543 47899999876553 235667788999999985
No 198
>PRK05785 hypothetical protein; Provisional
Probab=98.45 E-value=6.9e-07 Score=87.37 Aligned_cols=91 Identities=11% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
++.+|||+|||+|..+..+++.. .++|+|+|+|++|++.+++.. ..+++|+.+++ ...++||.|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp-~~d~sfD~v~~~- 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALP-FRDKSFDVVMSS- 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCC-CCCCCEEEEEec-
Confidence 46799999999999999998864 479999999999999987531 24578887764 235789999862
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
.+ ++.-++ ....|+++.+.|||.+
T Consensus 118 ----~~-l~~~~d----------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 ----FA-LHASDN----------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ----Ch-hhccCC----------------HHHHHHHHHHHhcCce
Confidence 22 221111 1245899999999943
No 199
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.41 E-value=3.9e-07 Score=86.66 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=87.9
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCcEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~-~~~~~fD~Vl 409 (526)
..+=.++||+|||||-.+..+-.+ ..+++++|+|.+|++.+.+. |+-+ +..++|+..|.. ..+++||+|.
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchh
Confidence 334579999999999999988776 46899999999999987653 4433 356677766654 3467899985
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChh------------hhHHHHHH
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE------------ENEERVEA 477 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~------------Ene~vv~~ 477 (526)
. .++.-+.--...++..+...|+|||.+.||+-+...+ ..+..|..
T Consensus 194 A----------------------aDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~ 251 (287)
T COG4976 194 A----------------------ADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRA 251 (287)
T ss_pred h----------------------hhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHH
Confidence 3 1222222223456888999999999999998664332 12445555
Q ss_pred HHHhCCCCeEecCC
Q 009769 478 FLLRHPEFSIDPAD 491 (526)
Q Consensus 478 ~l~~~~~~~~~~~~ 491 (526)
.++.+ +++++.+.
T Consensus 252 ~l~~~-Gl~~i~~~ 264 (287)
T COG4976 252 LLAAS-GLEVIAIE 264 (287)
T ss_pred HHHhc-CceEEEee
Confidence 55554 56665543
No 200
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.41 E-value=1.9e-06 Score=88.26 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC----ccEEEEcCccccccccCCCCCcEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----SVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~----~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..+.. ..+.+...|+..+ .++||.|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEE
Confidence 5789999999999999999974 469999999999999999998876321 2367788887554 3679999
Q ss_pred EE
Q 009769 409 LL 410 (526)
Q Consensus 409 l~ 410 (526)
++
T Consensus 217 v~ 218 (315)
T PLN02585 217 TC 218 (315)
T ss_pred EE
Confidence 85
No 201
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.40 E-value=2.3e-06 Score=85.19 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=69.1
Q ss_pred chHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009769 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (526)
Q Consensus 320 ~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~ 399 (526)
.....++..++..++++|||+|||+|..|..+++.. ..++++|+++.+++.+++++.. .. +++++++|+..+..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~-~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YE-RLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CC-cEEEEECchhcCCh
Confidence 344555666677889999999999999999999873 4699999999999999987743 23 48899999987653
Q ss_pred cCCCCCc---EEEEcCCC
Q 009769 400 NSTVKCD---KVLLDAPC 414 (526)
Q Consensus 400 ~~~~~fD---~Vl~D~Pc 414 (526)
. .|| .|+.++|+
T Consensus 90 ~---~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P---DFPKQLKVVSNLPY 104 (253)
T ss_pred h---HcCCcceEEEcCCh
Confidence 2 466 99999997
No 202
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.39 E-value=1.6e-06 Score=87.93 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=83.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.+..|||+|||+|-.++..|+. +..+|+|+|.|.-. +.+.+.++.+++.++|+++.+.+.+.. -+.+++|+|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSE- 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSE- 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeeh-
Confidence 4889999999999999999885 47899999998766 999999999999999999999887762 124789999853
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
..|... .....+ ...|-.=-++|+|||.++=++|+++
T Consensus 135 -WMGy~L----------l~EsMl-------dsVl~ARdkwL~~~G~i~P~~a~l~ 171 (346)
T KOG1499|consen 135 -WMGYFL----------LYESML-------DSVLYARDKWLKEGGLIYPDRATLY 171 (346)
T ss_pred -hhhHHH----------HHhhhh-------hhhhhhhhhccCCCceEccccceEE
Confidence 111111 011111 1123333579999999998888754
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.35 E-value=5.2e-06 Score=82.21 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=84.2
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCC---CccEEEEcCccccccccCCC-CCcEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTV-KCDKV 408 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~---~~~v~~~~~D~~~~~~~~~~-~fD~V 408 (526)
...+||=+|-|.|+.+..+.+. .+-.+|++||+++..++.+++.+..... +.+++++.+|+..+.....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4569999999999999888765 3357999999999999999998765432 35699999999998876666 89999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
++|.+- ..|.. .. . ...++++.+.+.|+|||.++.-..
T Consensus 155 i~D~~d-p~~~~-----~~-l-----------~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTD-PDGPA-----PN-L-----------FTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSS-TTSCG-----GG-G-----------SSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCC-CCCCc-----cc-c-----------cCHHHHHHHHhhcCCCcEEEEEcc
Confidence 999875 21210 00 0 123678999999999999997653
No 204
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=1.9e-05 Score=78.68 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=76.5
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 401 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--- 401 (526)
++..+.+.|+...+|+--|-||.+..+.+.++..++++|+|.++.+++.+++.+..++ +++++++..+.++....
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 4567788999999999999999999999998888999999999999999999998877 45899998877664332
Q ss_pred -CCCCcEEEEcCCCCC
Q 009769 402 -TVKCDKVLLDAPCSG 416 (526)
Q Consensus 402 -~~~fD~Vl~D~Pcsg 416 (526)
..++|.|++|--.|+
T Consensus 93 ~i~~vDGiL~DLGVSS 108 (314)
T COG0275 93 GIGKVDGILLDLGVSS 108 (314)
T ss_pred CCCceeEEEEeccCCc
Confidence 358999999976654
No 205
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.33 E-value=1.3e-05 Score=79.56 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=99.1
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCcEEEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLL 410 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--~~~fD~Vl~ 410 (526)
.-+|||+|||+|.--+-+....+. ...|.-.|.|+.-++..++.++..|+.+.+++.++|+++..... ....+++++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 458999999999988877776543 36899999999999999999999999997799999998864322 345688876
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 483 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 483 (526)
| |++.-.|| .+.+ ...|......+.|||+|||..--+||+- +.|...|..|.
T Consensus 216 ----s--GL~ElF~D------n~lv-------~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~LtsHr 267 (311)
T PF12147_consen 216 ----S--GLYELFPD------NDLV-------RRSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVLTSHR 267 (311)
T ss_pred ----e--cchhhCCc------HHHH-------HHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHHhccc
Confidence 3 33322232 1112 2347888899999999999888889863 57888998885
No 206
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.33 E-value=5.2e-06 Score=77.94 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=58.0
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc-cCC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 402 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~-~~~ 402 (526)
.++.. ++||.+|||+|||.|....++.+. .+.+.+|+|+++..+..+.+ .|+ .++++|+.+-.. ..+
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rGv----~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RGV----SVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cCC----CEEECCHHHhHhhCCC
Confidence 44444 467999999999999999888875 36899999999998876543 354 478899876554 336
Q ss_pred CCCcEEEE
Q 009769 403 VKCDKVLL 410 (526)
Q Consensus 403 ~~fD~Vl~ 410 (526)
..||.|++
T Consensus 74 ~sFD~VIl 81 (193)
T PF07021_consen 74 QSFDYVIL 81 (193)
T ss_pred CCccEEeh
Confidence 78999986
No 207
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.33 E-value=5.9e-07 Score=96.08 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=79.1
Q ss_pred CCEEEEeCCchhHHHHHHHHH---ccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASC---LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~---~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
+..|+|+|||+|......++. .++..+|+|+|.++.++..+++.++.++..++|+++++|++++.. ++++|+|+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 568999999999998666543 234579999999999999999988999998889999999999864 468999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
..=-| .|. +. -. -+.|..+-++|||||+++=+.++
T Consensus 265 ElLGs-fg~---nE---------l~-------pE~Lda~~rfLkp~Gi~IP~~~t 299 (448)
T PF05185_consen 265 ELLGS-FGD---NE---------LS-------PECLDAADRFLKPDGIMIPSSYT 299 (448)
T ss_dssp ---BT-TBT---TT---------SH-------HHHHHHGGGGEEEEEEEESSEEE
T ss_pred eccCC-ccc---cc---------cC-------HHHHHHHHhhcCCCCEEeCcchh
Confidence 54321 222 11 11 13478889999999998844333
No 208
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.32 E-value=8.8e-07 Score=92.75 Aligned_cols=105 Identities=26% Similarity=0.305 Sum_probs=80.1
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCc-cEEEEcCccccccccCCCCCcEEEEcC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
+-+|||.-||+|.-++..+..+.+..+|+++|+|+..++.+++|++.+++.+ ++++.+.|+..+.......||.|=+||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999999999999999987777899999999999999999999999987 789999999887643457899999997
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
--|. -.+|+.|.+.++.||.|. .|||
T Consensus 130 fGSp--------------------------~pfldsA~~~v~~gGll~-vTaT 155 (377)
T PF02005_consen 130 FGSP--------------------------APFLDSALQAVKDGGLLC-VTAT 155 (377)
T ss_dssp SS----------------------------HHHHHHHHHHEEEEEEEE-EEE-
T ss_pred CCCc--------------------------cHhHHHHHHHhhcCCEEE-Eecc
Confidence 6542 146999999999888554 5655
No 209
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.1e-05 Score=75.70 Aligned_cols=140 Identities=25% Similarity=0.310 Sum_probs=100.0
Q ss_pred hHHHHHHhc------CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcc
Q 009769 321 SAGLVVAVV------DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (526)
Q Consensus 321 ~s~l~~~~l------~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~ 394 (526)
-|.|.+.++ .+++|++||=+||++|+...|++...+ .|.|+|+|.|++..+.+-..+++- +++-.+.+|+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA 133 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDA 133 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeeccc
Confidence 455555544 367899999999999999999999876 899999999999999888887763 2366788999
Q ss_pred ccccccC--CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHHccCcCCCEEEEE--eCCCCh-
Q 009769 395 RTFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYS--TCSIDP- 468 (526)
Q Consensus 395 ~~~~~~~--~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~-lL~~a~~~LkpGG~lvys--tcs~~~- 468 (526)
+...... -+.+|+|..|..-- -|.+ +..+|..+||+||.++.+ .-|+..
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DVAQp-------------------------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT 188 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDVAQP-------------------------NQAEILADNAEFFLKKGGYVVIAIKARSIDVT 188 (231)
T ss_pred CCcHHhhhhcccccEEEEecCCc-------------------------hHHHHHHHHHHHhcccCCeEEEEEEeeccccc
Confidence 8755432 46799999997651 1333 467889999999966654 344443
Q ss_pred hhhHHHHHHHHHhC--CCCeEec
Q 009769 469 EENEERVEAFLLRH--PEFSIDP 489 (526)
Q Consensus 469 ~Ene~vv~~~l~~~--~~~~~~~ 489 (526)
.+-+++.+.-+++. .+|++..
T Consensus 189 ~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 189 ADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCHHHHHHHHHHHHHhcCceeeE
Confidence 33445555444432 2466654
No 210
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.27 E-value=6.3e-06 Score=74.93 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=91.1
Q ss_pred hHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc-
Q 009769 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 399 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~- 399 (526)
.+..++...++..|.-||++|.|+|-+|-.+.++.-....++++|.|++....+.+.. ++ +.++++|+.++..
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHH
Confidence 3445556677888999999999999999999998777789999999999998876542 22 5578999987652
Q ss_pred ---cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 400 ---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 400 ---~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
..+..||.|++-.|.-+..+ . .-.++|+.+...|.+||.+|-.|.+
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~-----~---------------~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPM-----H---------------RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcH-----H---------------HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22567999998777633222 1 1126799999999999999977766
No 211
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=2.1e-06 Score=80.63 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=79.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc-C
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD-A 412 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D-~ 412 (526)
...||++|||||..--..- +.+..+|+++|.++.|-+.+.+.++.....+...++++|..+++...+.++|.|+.- .
T Consensus 77 K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3468999999998654332 135789999999999999999988887555433499999999886567899998753 2
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
-||- +.+.+.|++.-++|+|||++++..
T Consensus 155 LCSv-----------------------e~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 155 LCSV-----------------------EDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred Eecc-----------------------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3542 113456999999999999999754
No 212
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=7.9e-06 Score=79.50 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=77.7
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHH------------HHcCCCccEEEEcCcccccc
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA------------KLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~------------~~~g~~~~v~~~~~D~~~~~ 398 (526)
+.++.+||+.|||.|.-...+|+. +.+|+|+|+|+..++.+.+.. ....- ..++++++|++++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCCC
Confidence 345789999999999999999985 568999999999999875521 01111 24899999999985
Q ss_pred c--cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 399 D--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 399 ~--~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
. ...+.||.|. |--| .-.+ .|+. ..+..+++.++|+|||.++..+-.
T Consensus 117 ~~~~~~~~fD~Vy-Dra~--~~Al--pp~~---------------R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 117 KIANNLPVFDIWY-DRGA--YIAL--PNDL---------------RTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccccccCCcCeee-eehh--HhcC--CHHH---------------HHHHHHHHHHHhCCCcEEEEEEEe
Confidence 3 2235799875 3222 1111 2221 234578889999999998876643
No 213
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=5.4e-06 Score=81.82 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=72.5
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~ 401 (526)
..-++...++.+++.||++|+|.|..|..+++. ..+|+|+|+++..+..+++.... .++++++++|+..+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchh
Confidence 455677788888999999999999999999987 56899999999999999887762 234899999998875321
Q ss_pred CCCCcEEEEcCCCC
Q 009769 402 TVKCDKVLLDAPCS 415 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcs 415 (526)
-..++.|+.|.|+.
T Consensus 93 l~~~~~vVaNlPY~ 106 (259)
T COG0030 93 LAQPYKVVANLPYN 106 (259)
T ss_pred hcCCCEEEEcCCCc
Confidence 11689999999995
No 214
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.19 E-value=1.1e-05 Score=78.33 Aligned_cols=128 Identities=22% Similarity=0.229 Sum_probs=74.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCcEEEEc
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 411 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~fD~Vl~D 411 (526)
.|.+||=+|=.- ..++++| +.+...+|+.+|+++..++.+++.+++.|++ |+.++.|+++..+. ..++||.++.|
T Consensus 44 ~gk~il~lGDDD-LtSlA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT--HHHHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCc-HHHHHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC
Confidence 478898776332 2334444 3455689999999999999999999999997 89999999986553 36899999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh--hhhHHHHHHHHHhCCCCeEe
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP--EENEERVEAFLLRHPEFSID 488 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~--~Ene~vv~~~l~~~~~~~~~ 488 (526)
||++-.|+ .-++..+...||..|...|-.++..+ .+-...+++++.+. ++-+.
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~-gl~i~ 174 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEM-GLVIT 174 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS---EEE
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHC-CcCHH
Confidence 99964443 23689999999988866666666543 22223466666543 44443
No 215
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.19 E-value=4e-07 Score=77.91 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=45.9
Q ss_pred EEeCCchhHHHHHHHHHccCCc--EEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC-CCCcEEEEcCCC
Q 009769 338 VDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST-VKCDKVLLDAPC 414 (526)
Q Consensus 338 LDl~aG~G~~t~~la~~~~~~~--~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pc 414 (526)
|++|++.|..|+.+++.+...+ +++++|..+. .+..++.+++.++.++++++.+|..+...... .+||.|++|..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999999998776554 8999999997 45556666667777779999999987654443 789999999875
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+. +. ...-+..+...|+|||.+++-.|
T Consensus 80 ~~----------------~~-------~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 SY----------------EA-------VLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp -H----------------HH-------HHHHHHHHGGGEEEEEEEEEE--
T ss_pred CH----------------HH-------HHHHHHHHHHHcCCCeEEEEeCc
Confidence 31 11 12348889999999999997544
No 216
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.18 E-value=1.5e-05 Score=75.19 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=79.4
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 415 (526)
+|+|+|+|.|-=++.+|-.. +..+++.+|.+..++..++.....+|++| ++++++.+.+ ......||.|++=+-..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~~~~fd~v~aRAv~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEYRESFDVVTARAVAP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTTTT-EEEEEEESSSS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--cccCCCccEEEeehhcC
Confidence 89999999999998888764 57899999999999999999999999997 9999999888 22357899998754441
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 416 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 416 g~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
+ ..++.-+..++++||+++.---.
T Consensus 127 -------------------l-------~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 127 -------------------L-------DKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp -------------------H-------HHHHHHHGGGEEEEEEEEEEESS
T ss_pred -------------------H-------HHHHHHHHHhcCCCCEEEEEcCC
Confidence 1 24588899999999998865433
No 217
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.18 E-value=7.8e-06 Score=84.26 Aligned_cols=111 Identities=24% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC---------CCccEEEEcCccccccc----
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---------VNSVIRTIHADLRTFAD---- 399 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g---------~~~~v~~~~~D~~~~~~---- 399 (526)
++.+|||+|||-||-..-.... +-..++|+|++...++.++++.+.+. ..-...++.+|.+...-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7889999999999977655542 46899999999999999999884322 11125678888764321
Q ss_pred -cCCCCCcEEEEcCCCCCCccccCCchhhccC-CHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 400 -NSTVKCDKVLLDAPCSGLGVLSKRADLRWNR-RLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 400 -~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~-~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
....+||+|-+--. +.+.. +.+.. +.+|.++...|+|||+++-.|.
T Consensus 140 ~~~~~~FDvVScQFa------------lHY~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------------LHYAFESEEKA-------RQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHH------------HHHhcCCHHHH-------HHHHHHHHHhcCCCCEEEEEec
Confidence 11248998854211 12221 22222 3469999999999999986553
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.15 E-value=2.9e-06 Score=78.30 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=81.5
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
+.+.|+|+|+|..+...|+. .-+|+|++.+|.+...+++|++..|..| ++++.+|+++..- +..|.|+|..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvicEm-- 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVICEM-- 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHHHH--
Confidence 68999999999999988876 5689999999999999999999999886 8999999988753 4678887521
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
-+..-+.+-|-..++.++++|+..++++
T Consensus 105 ------------------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 ------------------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ------------------hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 1223344556678899999999999887
No 219
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.14 E-value=2.1e-05 Score=79.12 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=94.1
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC--C-CccEEEEcCcccccc
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFA 398 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g--~-~~~v~~~~~D~~~~~ 398 (526)
..++..+..+.| .+||-+|-|.|+.+-.+++.. +-.+++.||+++..++.+++.+.... . +.+++++.+|+.++.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 344444555666 699999999999999999874 36799999999999999999876654 2 357899999999998
Q ss_pred ccCCCCCcEEEEcCCCC-CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 399 DNSTVKCDKVLLDAPCS-GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 399 ~~~~~~fD~Vl~D~Pcs-g~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.....+||+|++|.--. |-+. .+ .+.++++.+.+.|+++|+++.-+-|
T Consensus 144 ~~~~~~fDvIi~D~tdp~gp~~--------------~L-----ft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 144 RDCEEKFDVIIVDSTDPVGPAE--------------AL-----FTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred HhCCCcCCEEEEcCCCCCCccc--------------cc-----CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 76666899999984321 2111 00 1346899999999999999987555
No 220
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.13 E-value=3.8e-06 Score=81.56 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=76.7
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHH-cCC----------CccEEEEcCccccc
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL-HQV----------NSVIRTIHADLRTF 397 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~-~g~----------~~~v~~~~~D~~~~ 397 (526)
+...++.+||..|||.|.-...+|+. +.+|+|+|+|+..++.+.+.... ... .+.|++.++|++.+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34677889999999999999999985 47999999999999987332111 100 12478999999998
Q ss_pred cccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 398 ~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.....++||.|+ |=-| .-.+ +|+. . .+..+++.++|+|||++++.|
T Consensus 110 ~~~~~g~fD~iy-Dr~~--l~Al--pp~~--------R-------~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 110 PPEDVGKFDLIY-DRTF--LCAL--PPEM--------R-------ERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp GGSCHHSEEEEE-ECSS--TTTS---GGG--------H-------HHHHHHHHHCEEEEEEEEEEE
T ss_pred ChhhcCCceEEE-Eecc--cccC--CHHH--------H-------HHHHHHHHHHhCCCCcEEEEE
Confidence 765556899985 4222 2121 2332 1 234788899999999955554
No 221
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.12 E-value=2.3e-05 Score=77.27 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~ 403 (526)
.+....+..+..+|+|+|.|.|..+..+++.. +..+++.+|+ |..++.+++ .++|+++.+|+++. .+.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~P~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---LPV 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---CSS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhh---hcc
Confidence 34455666777899999999999999999885 5789999999 778887777 45799999999833 234
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCC--CEEEEEeCCCChhh
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG--GVLVYSTCSIDPEE 470 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpG--G~lvystcs~~~~E 470 (526)
+|+|++-- +.+.++.++.. .||+++...|+|| |+|+.....+....
T Consensus 159 -~D~~~l~~-------------vLh~~~d~~~~-------~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 159 -ADVYLLRH-------------VLHDWSDEDCV-------KILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp -ESEEEEES-------------SGGGS-HHHHH-------HHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred -ccceeeeh-------------hhhhcchHHHH-------HHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 99998721 12233445543 4599999999999 99998776554433
No 222
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.11 E-value=1.2e-05 Score=78.59 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009769 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (526)
Q Consensus 322 s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~ 401 (526)
..-++.-.++++++.||++|-|||..|..+.+. +.+|+|+|+++.++..+++..+-....+..+++++|+.....
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-- 121 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-- 121 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--
Confidence 344555667899999999999999999999886 679999999999999999998877777889999999987652
Q ss_pred CCCCcEEEEcCCC--CCCcccc--CCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 402 TVKCDKVLLDAPC--SGLGVLS--KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 402 ~~~fD~Vl~D~Pc--sg~G~l~--~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
..||.++.|.|+ |+-+++. .++.+.|.- ..-+|++ -|.+++..-|...|+--|+.
T Consensus 122 -P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~A-------vlmfQ~E---fa~RLva~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 122 -PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCA-------VLMFQRE---FALRLVARPGDSLYCRLSIN 180 (315)
T ss_pred -cccceeeccCCccccCHHHHHhcCCCCCccee-------eeehhhh---hhhhhccCCCCchhceeehh
Confidence 369999999888 3333321 122222321 1112333 35555666677777555544
No 223
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.11 E-value=1.2e-05 Score=81.39 Aligned_cols=88 Identities=22% Similarity=0.333 Sum_probs=73.4
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC----
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---- 401 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---- 401 (526)
...+.+++|..++|+-+|-||.|..+++.+++ ++|+|+|.++.++..++++++.++ ++++++++++.++....
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHhcC
Confidence 45567788999999999999999999998764 999999999999999999987653 46899999988765432
Q ss_pred CCCCcEEEEcCCCCC
Q 009769 402 TVKCDKVLLDAPCSG 416 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg 416 (526)
...+|.|++|--+|+
T Consensus 90 ~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 90 VTKIDGILVDLGVSS 104 (305)
T ss_pred CCcccEEEEeccCCH
Confidence 246999999977764
No 224
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.10 E-value=6.6e-06 Score=77.09 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=66.6
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC--CCccEEEEcCcccccc--c-cCCCCC
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFA--D-NSTVKC 405 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g--~~~~v~~~~~D~~~~~--~-~~~~~f 405 (526)
...+.+||++|||+|..++.++... +..+|++.|.++ .+..++.|++.++ ..+.+.+...|-.+.. . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3467899999999999999888863 467999999999 9999999999987 4455666665543311 1 123579
Q ss_pred cEEEE-cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 406 DKVLL-DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 406 D~Vl~-D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
|+||. |.-+ . .+. ...|+.....+++++|.++.+ +..-
T Consensus 121 D~IlasDv~Y--------------~--~~~-------~~~L~~tl~~ll~~~~~vl~~-~~~R 159 (173)
T PF10294_consen 121 DVILASDVLY--------------D--EEL-------FEPLVRTLKRLLKPNGKVLLA-YKRR 159 (173)
T ss_dssp SEEEEES--S-----------------GGG-------HHHHHHHHHHHBTT-TTEEEE-EE-S
T ss_pred CEEEEecccc--------------h--HHH-------HHHHHHHHHHHhCCCCEEEEE-eCEe
Confidence 99984 3222 1 112 234577788899999985544 4433
No 225
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.10 E-value=2.1e-05 Score=75.52 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=86.4
Q ss_pred EEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCC
Q 009769 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 416 (526)
Q Consensus 337 VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg 416 (526)
|.|+||--|...+++++. +...+++|+|+++.-++.|+++++++|+.++++++.+|.+..... .+..|.|++ +|
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI----AG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI----AG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE----EE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE----ec
Confidence 689999999999999986 444589999999999999999999999999999999998876532 233788876 45
Q ss_pred CccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEec
Q 009769 417 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 417 ~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 489 (526)
.|- .+-.+||+.....++....||.+ |..+...+..||..| +|.+..
T Consensus 75 MGG--------------------~lI~~ILe~~~~~~~~~~~lILq-----P~~~~~~LR~~L~~~-gf~I~~ 121 (205)
T PF04816_consen 75 MGG--------------------ELIIEILEAGPEKLSSAKRLILQ-----PNTHAYELRRWLYEN-GFEIID 121 (205)
T ss_dssp E-H--------------------HHHHHHHHHTGGGGTT--EEEEE-----ESS-HHHHHHHHHHT-TEEEEE
T ss_pred CCH--------------------HHHHHHHHhhHHHhccCCeEEEe-----CCCChHHHHHHHHHC-CCEEEE
Confidence 443 12346788888888776678753 344567889999988 577754
No 226
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.08 E-value=1.9e-05 Score=78.95 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=79.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.+..|||+|||+|..+...|+. +..+|+|+|.| +|.+.++...+-+.+.++|+++.+-+.+.. .+++.|+||..|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEEEecc
Confidence 4779999999999999988875 57899999987 588999999999988889999998877654 468999999876
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
-- .+- .++..++. .-+|-++|||.|.++
T Consensus 252 MG----~mL--------~NERMLEs--------Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 252 MG----YML--------VNERMLES--------YLHARKWLKPNGKMF 279 (517)
T ss_pred ch----hhh--------hhHHHHHH--------HHHHHhhcCCCCccc
Confidence 43 211 11222222 245669999999887
No 227
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.8e-06 Score=89.17 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=91.1
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCcEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 408 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---~~~fD~V 408 (526)
.++-+|||.-|++|.-++..|..+++-..|+|+|.++..+...++|++.+++.+.++..+.|+....-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999999999999889999999999999999999999999988888999987654332 3689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
=+||--|.+ .+|+.|.+.+..||.| +.||+
T Consensus 188 DLDPyGs~s--------------------------~FLDsAvqav~~gGLL-~vT~T 217 (525)
T KOG1253|consen 188 DLDPYGSPS--------------------------PFLDSAVQAVRDGGLL-CVTCT 217 (525)
T ss_pred ecCCCCCcc--------------------------HHHHHHHHHhhcCCEE-EEEec
Confidence 999865432 4699999999999955 46776
No 228
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.04 E-value=1.7e-05 Score=75.58 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCCCcEEEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVKCDKVLL 410 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-~~~~~~fD~Vl~ 410 (526)
+++.+|||+|||+|..+..++... ...++++|+++.+++.++++ + ++++++|+.+.. ....++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccccCCCCcCEEEE
Confidence 467899999999999998887652 45789999999999887531 2 467778876522 223468999998
Q ss_pred cCC
Q 009769 411 DAP 413 (526)
Q Consensus 411 D~P 413 (526)
...
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 643
No 229
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.98 E-value=2.8e-05 Score=77.73 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=79.7
Q ss_pred hHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCc-----cEEEEcCccc
Q 009769 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLR 395 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~-----~v~~~~~D~~ 395 (526)
-|+|+-... ++++.++|+|||-||-.+-.-.. +-+.++++||.+..++.++++.+.+.-.. .+.++.+|.+
T Consensus 107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 355665554 47889999999999988765542 46799999999999999998876543221 2578888876
Q ss_pred ccc-----ccCCCCCcEEEEcCCCCCCccccCCchhhccC-CHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 396 TFA-----DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR-RLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 396 ~~~-----~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~-~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
.-. +....+||+|-+---| .+.. +.+.. +.+|.++.+.|+|||.++-
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~------------HYaFetee~a-------r~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAF------------HYAFETEESA-------RIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeE------------eeeeccHHHH-------HHHHHHHHhhcCCCcEEEE
Confidence 421 1112349988543222 1221 22222 3469999999999999883
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=8e-05 Score=71.74 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=80.2
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
+.+|+|+|+|.|-=++-+|-. .++.+++-+|....++..++...+.+|++| ++++++.+.++...... ||.|.+=+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~-~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQ-YDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccccccc-CcEEEeehc
Confidence 579999999999999998844 557789999999999999999999999997 89999999887754222 999986444
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 414 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
++ + ..+++-+..++|+||.++
T Consensus 145 a~-------------------L-------~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 AS-------------------L-------NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cc-------------------h-------HHHHHHHHHhcccCCcch
Confidence 32 1 134777899999999875
No 231
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=3.2e-05 Score=78.97 Aligned_cols=103 Identities=22% Similarity=0.254 Sum_probs=83.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
..+|+|..+|+|.-++.+|...+.. +++.+|+||...+.+++|++.+...+ ..+++.|+..+.......||.|=+||-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCC
Confidence 5699999999999999999876543 89999999999999999999994444 556678988877655578999999976
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 414 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
-|- + -+++.|.+.++.||.|.. |||
T Consensus 131 GSP--a------------------------PFlDaA~~s~~~~G~l~v-TAT 155 (380)
T COG1867 131 GSP--A------------------------PFLDAALRSVRRGGLLCV-TAT 155 (380)
T ss_pred CCC--c------------------------hHHHHHHHHhhcCCEEEE-Eec
Confidence 542 1 359999999999997764 444
No 232
>PRK04148 hypothetical protein; Provisional
Probab=97.90 E-value=0.00015 Score=64.60 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=56.6
Q ss_pred HHHHhcCCCCCCEEEEeCCchhH-HHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~-~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~ 402 (526)
.+...+....+.+|||+|||+|. .+..+++. +..|+|+|+++.+++.++++ + +.++.+|.++.....-
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHH
Confidence 34444444456799999999997 77677753 47999999999988877654 3 4578899988765545
Q ss_pred CCCcEEEE
Q 009769 403 VKCDKVLL 410 (526)
Q Consensus 403 ~~fD~Vl~ 410 (526)
+.+|+|..
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 67899974
No 233
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.89 E-value=0.00016 Score=73.43 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHH--HcC---C-CccEEEEcCccccccccCCCCC
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK--LHQ---V-NSVIRTIHADLRTFADNSTVKC 405 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~--~~g---~-~~~v~~~~~D~~~~~~~~~~~f 405 (526)
+.-++||-+|-|-|--...+.+. ++-.+|+-+|++|++++.++.+.. ..+ . +.+++++..|++++.......|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34579999999999888888764 557899999999999999995533 222 1 3478999999999987777799
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC-CChhhhHHHHHHHHHhCCC
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLRHPE 484 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs-~~~~Ene~vv~~~l~~~~~ 484 (526)
|.||+|-|-...-.+. .+.. .++-..+.+.|+++|.+|...-| +...+---.|.+-+++- +
T Consensus 367 D~vIVDl~DP~tps~~------------rlYS-----~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A-G 428 (508)
T COG4262 367 DVVIVDLPDPSTPSIG------------RLYS-----VEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA-G 428 (508)
T ss_pred cEEEEeCCCCCCcchh------------hhhh-----HHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhC-c
Confidence 9999998864322221 1222 25667788899999999976555 22323222333444432 4
Q ss_pred CeEecCCCCCCCCcccCCceEEEcC
Q 009769 485 FSIDPADGLVPSDFVTKHGFFFSDP 509 (526)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~g~~~~~P 509 (526)
+...|.+...|. ..+.||.-..|
T Consensus 429 ~~~~Pyhv~VPT--FGeWGf~l~~~ 451 (508)
T COG4262 429 YRVWPYHVHVPT--FGEWGFILAAP 451 (508)
T ss_pred ceeeeeEEecCc--ccccceeeccc
Confidence 666665544443 34556654444
No 234
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.88 E-value=3.3e-05 Score=74.45 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCCCC-EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009769 322 AGLVVAVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (526)
Q Consensus 322 s~l~~~~l~~~~g~-~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~ 400 (526)
+.+...+....++. .++|+|||+|--+..+|... -+|+|+|+|+.+|+.+++................+...+...
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG 97 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence 44555555555665 89999999996666677663 479999999999998776433322221233444455454422
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC-EEE---EEeCCCChhhhHHHHH
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG-VLV---YSTCSIDPEENEERVE 476 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG-~lv---ystcs~~~~Ene~vv~ 476 (526)
.+++|+|++ +.| +.|- ++ .++.+.+.++||+.| +++ |.+-.+...|-..++.
T Consensus 98 -e~SVDlI~~-Aqa-----------~HWF----dl-------e~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~ 153 (261)
T KOG3010|consen 98 -EESVDLITA-AQA-----------VHWF----DL-------ERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVML 153 (261)
T ss_pred -Ccceeeehh-hhh-----------HHhh----ch-------HHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHH
Confidence 578999874 333 3453 22 245888999999877 433 3333334445455555
Q ss_pred HHHH
Q 009769 477 AFLL 480 (526)
Q Consensus 477 ~~l~ 480 (526)
++..
T Consensus 154 r~~~ 157 (261)
T KOG3010|consen 154 RLYD 157 (261)
T ss_pred HHhh
Confidence 5554
No 235
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.87 E-value=0.00016 Score=68.88 Aligned_cols=135 Identities=21% Similarity=0.322 Sum_probs=93.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-------CCCCCc
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------STVKCD 406 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-------~~~~fD 406 (526)
+.+||++|||+|-.+.++|+.++ .-+-.-.|.++..+..++..+...+++|....+..|+...... ....||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 33699999999999999999986 5788889999999999999999889887556667777654221 135799
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE-EEeCC----CChhhhHHHHHHHHH-
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCS----IDPEENEERVEAFLL- 480 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv-ystcs----~~~~Ene~vv~~~l~- 480 (526)
.|++ .+.=.|. .| . .-..++..+.++|++||.|+ |--.. +.++-|+. +...|+
T Consensus 105 ~i~~----~N~lHI~-----p~----~-------~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~-FD~sLr~ 163 (204)
T PF06080_consen 105 AIFC----INMLHIS-----PW----S-------AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAA-FDASLRS 163 (204)
T ss_pred eeee----hhHHHhc-----CH----H-------HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHH-HHHHHhc
Confidence 9984 2111110 11 1 12457999999999999977 44333 44555554 455554
Q ss_pred hCCCCeEecC
Q 009769 481 RHPEFSIDPA 490 (526)
Q Consensus 481 ~~~~~~~~~~ 490 (526)
++|.|-+-++
T Consensus 164 rdp~~GiRD~ 173 (204)
T PF06080_consen 164 RDPEWGIRDI 173 (204)
T ss_pred CCCCcCccCH
Confidence 5677655443
No 236
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.86 E-value=3.6e-05 Score=73.34 Aligned_cols=111 Identities=25% Similarity=0.415 Sum_probs=74.8
Q ss_pred CEEEEeCCchhHHHHHHHHHccC----Cc----EEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc------c
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSG----QG----LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------N 400 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~----~~----~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~------~ 400 (526)
.+|+|+||+||.++..+++.+-. .+ +|++||+.+ ...+.+ |..+++|++.... .
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCc-eEEeecccCCHhHHHHHHHH
Confidence 58999999999999999987643 22 399999976 234565 5667899876432 1
Q ss_pred C-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH--HHHHHHHccCcCCCEEEEEeCCCChhhhHH
Q 009769 401 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELLDAASLLVKPGGVLVYSTCSIDPEENEE 473 (526)
Q Consensus 401 ~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~--~lL~~a~~~LkpGG~lvystcs~~~~Ene~ 473 (526)
+ +++.|+|++|..---+|+ ++++++...|. .-|.-+..+|||||.+| --++..++-.
T Consensus 111 fggekAdlVvcDGAPDvTGl-------------Hd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV---aKifRg~~ts 170 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGL-------------HDLDEYVQAQLLLAALNIATCVLKPGGSFV---AKIFRGRDTS 170 (294)
T ss_pred hCCCCccEEEeCCCCCcccc-------------ccHHHHHHHHHHHHHHHHHhheecCCCeee---hhhhccCchH
Confidence 2 468999999954433444 56666643332 23455567899999998 3445544443
No 237
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.86 E-value=7.4e-05 Score=66.92 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=75.6
Q ss_pred EEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCC-CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHH
Q 009769 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL 438 (526)
Q Consensus 360 ~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~-~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l 438 (526)
+|+|+||.+.+++..+++++..++.+++++++..-.++....+. .+|.|+.|--+ +..- | +.+..-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY-----LPgg-D-------k~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY-----LPGG-D-------KSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB------CTS---------TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc-----CCCC-C-------CCCCcC
Confidence 58999999999999999999999988899998877776654444 79999877433 2221 1 111112
Q ss_pred HHHHHHHHHHHHccCcCCCEEEEEeCCCChh--hhHHHHHHHHHhCC--CCeEe
Q 009769 439 KILQDELLDAASLLVKPGGVLVYSTCSIDPE--ENEERVEAFLLRHP--EFSID 488 (526)
Q Consensus 439 ~~~q~~lL~~a~~~LkpGG~lvystcs~~~~--Ene~vv~~~l~~~~--~~~~~ 488 (526)
++....-|+.++++|+|||.++.....-|+. |..+.|..|+...+ .|.+.
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 2233355899999999999999877776763 33346778888754 45553
No 238
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.83 E-value=8.8e-05 Score=70.73 Aligned_cols=152 Identities=27% Similarity=0.335 Sum_probs=79.5
Q ss_pred ccceeeccchHHHHHH-hc-CCCCCCEEEEeCCchhHHHHHHHHHc---cCCcEEEEEcCChhHHHHHHHHHHHcCCCcc
Q 009769 312 EGLCAVQDESAGLVVA-VV-DPQPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSV 386 (526)
Q Consensus 312 ~G~~~iQd~~s~l~~~-~l-~~~~g~~VLDl~aG~G~~t~~la~~~---~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~ 386 (526)
.|...+|.+.-+++.. ++ ..+| +.|+++|...||.++..|.++ ++.++|+++|++.+...... .+.+.+..+
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~r 86 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPR 86 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TT
T ss_pred CCeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCc
Confidence 4566666554333222 11 2333 599999999999998887654 46799999999755543221 223444567
Q ss_pred EEEEcCcccccccc-----C--CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEE
Q 009769 387 IRTIHADLRTFADN-----S--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 459 (526)
Q Consensus 387 v~~~~~D~~~~~~~-----~--~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~l 459 (526)
|+++.+|..+.... . ......|+.|.--+..-+ ...|+....++++|+++
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hv-----------------------l~eL~~y~plv~~G~Y~ 143 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHV-----------------------LAELEAYAPLVSPGSYL 143 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSH-----------------------HHHHHHHHHT--TT-EE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHH-----------------------HHHHHHhCccCCCCCEE
Confidence 99999998764321 1 234558888866432111 23367788999999998
Q ss_pred EEEe-CC------------CChhhh-HHHHHHHHHhCCCCeEec
Q 009769 460 VYST-CS------------IDPEEN-EERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 460 vyst-cs------------~~~~En-e~vv~~~l~~~~~~~~~~ 489 (526)
|.-. .. +.+..| ...+.+||+.|++|++..
T Consensus 144 IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 144 IVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp EETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEET
T ss_pred EEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEecc
Confidence 7432 11 111112 356899999999998875
No 239
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.79 E-value=8e-05 Score=72.76 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHH
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 373 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~ 373 (526)
.+|.+|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36789999999999999999985 46799999999988765
No 240
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.74 E-value=0.00017 Score=67.64 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=89.6
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC-------CCccEEEEcCccccccccCC--CC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ-------VNSVIRTIHADLRTFADNST--VK 404 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g-------~~~~v~~~~~D~~~~~~~~~--~~ 404 (526)
.-.+.|+|||-||..+.++.+. ++.-|+|.||--...+..+++++.++ ..| +.+.+.++..+.+... ++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhcc
Confidence 3469999999999999999875 57899999998887777777777665 444 6677777776665431 22
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCC
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 484 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~ 484 (526)
.+.++.=- .+|..+-+. ....-++..++.+..-+|++||.++++|- -.|-.+.....+.+||-
T Consensus 139 Lskmff~f---------pdpHfk~~k-----hk~rii~~~l~~eyay~l~~gg~~ytitD---v~elh~wm~~~~e~hpl 201 (249)
T KOG3115|consen 139 LSKMFFLF---------PDPHFKARK-----HKWRIITSTLLSEYAYVLREGGILYTITD---VKELHEWMVKHLEEHPL 201 (249)
T ss_pred cccceeec---------CChhHhhhh-----ccceeechhHHHHHHhhhhcCceEEEEee---HHHHHHHHHHHHHhCcH
Confidence 22222211 112211111 11112344678889999999999997763 34445566677888987
Q ss_pred CeEec
Q 009769 485 FSIDP 489 (526)
Q Consensus 485 ~~~~~ 489 (526)
|+...
T Consensus 202 fe~lt 206 (249)
T KOG3115|consen 202 FERLT 206 (249)
T ss_pred hhhcc
Confidence 76644
No 241
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.72 E-value=8.9e-05 Score=74.20 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=71.9
Q ss_pred cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 319 d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
.....-++..+++.+++.|||+|+|+|..|..+++. ..+++++|+++..++.+++... ...+++++++|+..+.
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence 334566777788889999999999999999999987 2799999999999999988665 2335999999999876
Q ss_pred ccC--CCCCcEEEEcCCC
Q 009769 399 DNS--TVKCDKVLLDAPC 414 (526)
Q Consensus 399 ~~~--~~~fD~Vl~D~Pc 414 (526)
... ......|+.+.|+
T Consensus 90 ~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp GGGHCSSSEEEEEEEETG
T ss_pred cHHhhcCCceEEEEEecc
Confidence 542 2355688999998
No 242
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.71 E-value=0.00015 Score=71.19 Aligned_cols=94 Identities=23% Similarity=0.283 Sum_probs=65.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
..++||+|||-|+.|..++..+ .+|++.|.|+.|...++ +.|.. ++..| ++.. .+.+||+|.+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~~----vl~~~--~w~~-~~~~fDvIsc--- 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGFT----VLDID--DWQQ-TDFKFDVISC--- 157 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCCe----EEehh--hhhc-cCCceEEEee---
Confidence 5689999999999999999875 46999999999966554 44553 22222 2222 2357999953
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 414 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.-++.|..+ -..+|+.+.+.|+|+|+++.+.
T Consensus 158 ---LNvLDRc~~----------------P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 ---LNVLDRCDR----------------PLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---hhhhhccCC----------------HHHHHHHHHHHhCCCCEEEEEE
Confidence 223333211 1257999999999999998663
No 243
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.71 E-value=7.8e-05 Score=71.92 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=72.1
Q ss_pred EEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---cCCCCCcEEEEc
Q 009769 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLD 411 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---~~~~~fD~Vl~D 411 (526)
+||++|||.|....-+.+.-+ +.-.|+|+|.|+.+++..+++..... .++.....|+..... ...+.+|.|.+=
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999999998887532 13799999999999999998876544 234444555544321 124677876532
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
---|.. +| +. +...+++..++|||||.|++...
T Consensus 152 FvLSAi-----~p--------ek-------~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 152 FVLSAI-----HP--------EK-------MQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEecc-----Ch--------HH-------HHHHHHHHHHHhCCCcEEEEeec
Confidence 112221 11 11 23458999999999999997644
No 244
>PRK00536 speE spermidine synthase; Provisional
Probab=97.70 E-value=0.0011 Score=66.01 Aligned_cols=109 Identities=9% Similarity=-0.033 Sum_probs=77.0
Q ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc--CC-CccEEEEcCcccccccc
Q 009769 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADN 400 (526)
Q Consensus 324 l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~--g~-~~~v~~~~~D~~~~~~~ 400 (526)
.++.+..+.| ++||=+|.|-|+....+++. + .+|+-||+++..++.+++.+... ++ +.+++++. . +...
T Consensus 64 Hppl~~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~ 135 (262)
T PRK00536 64 HMGGCTKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDL 135 (262)
T ss_pred HHHHhhCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhc
Confidence 3444444444 69999999999999999986 2 49999999999999999944332 22 33566654 1 2221
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
..++||+||+|-..+ .++.+.+.+.|+|||.+|.-+.|..
T Consensus 136 ~~~~fDVIIvDs~~~---------------------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 136 DIKKYDLIICLQEPD---------------------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred cCCcCCEEEEcCCCC---------------------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 236899999994321 2456788999999999997655533
No 245
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.68 E-value=0.00016 Score=66.81 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=58.5
Q ss_pred EEEcCChhHHHHHHHHHHHcC--CCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHH
Q 009769 362 YAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 439 (526)
Q Consensus 362 ~avD~s~~~l~~a~~n~~~~g--~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~ 439 (526)
+|+|+|++|++.++++.+..+ ..++++++++|+.+++. ..+.||.|++. .+. +.-+ +
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~~-----~~l-~~~~---------d----- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTMG-----YGL-RNVV---------D----- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEec-----chh-hcCC---------C-----
Confidence 489999999999987765432 22358999999988753 35689999852 222 1111 1
Q ss_pred HHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 440 ILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 440 ~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
..+.|+++.++|||||.++....+.
T Consensus 60 --~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 60 --RLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred --HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 2356899999999999999876653
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.63 E-value=0.00044 Score=70.69 Aligned_cols=72 Identities=25% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
+.+|.++||+||+|||+|-.++++ +.+|+|||..+ +...+. -+.+|+.+..|...+.+. ...+|.|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~---~~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM---DTGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh---CCCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 457999999999999999999986 46999999554 112221 234588888888776643 468999999
Q ss_pred cCCC
Q 009769 411 DAPC 414 (526)
Q Consensus 411 D~Pc 414 (526)
|.-|
T Consensus 277 Dmve 280 (357)
T PRK11760 277 DMVE 280 (357)
T ss_pred eccc
Confidence 9888
No 247
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.62 E-value=0.00027 Score=77.34 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=95.9
Q ss_pred cccceeeccchHHHHHHhcCCC--CCCEEEEeCCchhHHHHHHHHHcc---CCcEEEEEcCChhHHHHHHHHHHHcCCCc
Q 009769 311 KEGLCAVQDESAGLVVAVVDPQ--PGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNS 385 (526)
Q Consensus 311 ~~G~~~iQd~~s~l~~~~l~~~--~g~~VLDl~aG~G~~t~~la~~~~---~~~~v~avD~s~~~l~~a~~n~~~~g~~~ 385 (526)
..|.++....-+.+++.++.+. |+..|.|+|||+|++.......+. ....+++.+....+...+..|+..++...
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 3677777777778888887754 678999999999999876554432 12469999999999999999988877642
Q ss_pred -cEEEEcCcccccccc-CCCCCcEEEEcCCCCCC---ccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 386 -VIRTIHADLRTFADN-STVKCDKVLLDAPCSGL---GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 386 -~v~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~---G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
......+|-...... ...+||.|+.|||++.. |.+.......|......+..+..-...++.++...|++||+..
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEE
Confidence 223334454332111 13569999999999753 1111000101110001111222335577889999999999754
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.55 E-value=6.9e-05 Score=75.97 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=63.7
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 401 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--- 401 (526)
+...+.++++..++|+--|.||.|.++++.+++ ++|+|+|.++.+++.++++++.. .+++.++++++.++....
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc
Confidence 445667889999999999999999999998776 99999999999999998877765 456999999987764321
Q ss_pred --CCCCcEEEEcCCCCC
Q 009769 402 --TVKCDKVLLDAPCSG 416 (526)
Q Consensus 402 --~~~fD~Vl~D~Pcsg 416 (526)
...+|.||+|.-+|+
T Consensus 89 ~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 89 NGINKVDGILFDLGVSS 105 (310)
T ss_dssp TTTS-EEEEEEE-S--H
T ss_pred cCCCccCEEEEccccCH
Confidence 347999999988763
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.53 E-value=0.0011 Score=68.07 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccC---CcEEEEEcCChhHHHHHHHHHHHcCCCc-cEEEEcCccccccccC-----C
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNS-----T 402 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~n~~~~g~~~-~v~~~~~D~~~~~~~~-----~ 402 (526)
.++..++|+|||.|.|+..+.+.+.. ..+.+++|+|...|+.+.+++..-..+. .+.-+++|..+..... .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35778999999999999988877642 3579999999999999999988333342 2445888886643211 1
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHc-cCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL-LVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~-~LkpGG~lvyst 463 (526)
.....|+. |-|..|-+. +.+ ...+|....+ .|+|||.|+...
T Consensus 155 ~~~r~~~f--lGSsiGNf~----------~~e-------a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILW--LGSSIGNFS----------RPE-------AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEE--eCccccCCC----------HHH-------HHHHHHHHHHhhCCCCCEEEEec
Confidence 23455543 334444422 222 2356888888 999999998754
No 250
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.53 E-value=0.00057 Score=65.74 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=68.8
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHH-------HcCC-CccEEEEcCccccc
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-------LHQV-NSVIRTIHADLRTF 397 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~-------~~g~-~~~v~~~~~D~~~~ 397 (526)
...+++.+++..+|+|||.|...+++|... +-.+.+|||+.+...+.++.+.+ .+|. ...+++.++|+.+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 345678899999999999999998888664 35679999999999887765433 3444 23578889998764
Q ss_pred ccc--CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChh
Q 009769 398 ADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 469 (526)
Q Consensus 398 ~~~--~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~ 469 (526)
... .-...|+|++|--|.+ + ++. .-|...+.-||+|-++| ++-++.+.
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~---------------~-~l~-------~~L~~~~~~lk~G~~II-s~~~~~~~ 163 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD---------------P-DLN-------LALAELLLELKPGARII-STKPFCPR 163 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT----------------H-HHH-------HHHHHHHTTS-TT-EEE-ESS-SS-T
T ss_pred HhHhhhhcCCCEEEEeccccC---------------H-HHH-------HHHHHHHhcCCCCCEEE-ECCCcCCC
Confidence 311 1134799999887742 1 111 11455566788877765 55555554
No 251
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.52 E-value=0.00029 Score=71.08 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=79.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc-CCCccEEEEcCc----cccccccCCCCCcEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHAD----LRTFADNSTVKCDKV 408 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~-g~~~~v~~~~~D----~~~~~~~~~~~fD~V 408 (526)
.-++||+|+|.-..=-.++..+. +.+.+|.|+++..++.|++|++++ ++.++|+++... ++.......+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999999876444444444 589999999999999999999999 999889887542 222222224689999
Q ss_pred EEcCCCCCCcc------ccCC------------chhhccCC-HHHHHHH--HHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 409 LLDAPCSGLGV------LSKR------------ADLRWNRR-LEDMEEL--KILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 409 l~D~Pcsg~G~------l~~~------------p~~~~~~~-~~~l~~l--~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
+|+||...+.- -++. |.....-+ .+-.... ...=.+++++...+- ..+...|+-+.
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~---~~v~WfTsmvg 258 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLK---DQVRWFTSMVG 258 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHG---GGEEEEEEEES
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhC---CCcEEEeeccc
Confidence 99999854321 1111 11100000 0111110 122335677766552 24555567788
Q ss_pred hhhhHHHHHHHHHhCC
Q 009769 468 PEENEERVEAFLLRHP 483 (526)
Q Consensus 468 ~~Ene~vv~~~l~~~~ 483 (526)
..+|-..+...|++..
T Consensus 259 KkssL~~l~~~L~~~~ 274 (299)
T PF05971_consen 259 KKSSLKPLKKELKKLG 274 (299)
T ss_dssp SGGGHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHhcC
Confidence 9999888888888764
No 252
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.51 E-value=0.00014 Score=73.28 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=60.0
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCcEEEEcCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 414 (526)
+|+|+|||.|+.+..+.+. +-..++++|+++..++..+.|.... ++++|+.++.... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCC
Confidence 6999999999998877653 3457899999999999988876321 4567777765432 4579999999999
Q ss_pred CCCccccC
Q 009769 415 SGLGVLSK 422 (526)
Q Consensus 415 sg~G~l~~ 422 (526)
.+.....+
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 77655544
No 253
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.43 E-value=0.0015 Score=62.13 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=64.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCC-----------------------------
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQV----------------------------- 383 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~----------------------------- 383 (526)
.-++.|.|||.|+..+.+.-+-.+ -..|+|-|++++.++.+++|+..+..
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 358999999999988877755322 24799999999999998887643211
Q ss_pred ------------CccEEEEcCcccccccc----CCCCCcEEEEcCCCCCCccccCCchhhccC--CHHHHHHHHHHHHHH
Q 009769 384 ------------NSVIRTIHADLRTFADN----STVKCDKVLLDAPCSGLGVLSKRADLRWNR--RLEDMEELKILQDEL 445 (526)
Q Consensus 384 ------------~~~v~~~~~D~~~~~~~----~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~--~~~~l~~l~~~q~~l 445 (526)
.-...+.+.|+++.... .....|+|+.|.|+... ..|.- ...- -.++
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~--------t~W~g~~~~~p-------~~~m 196 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM--------TSWQGEGSGGP-------VAQM 196 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS--------SSTTS---HHH-------HHHH
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc--------ccccCCCCCCc-------HHHH
Confidence 11244667777764321 13447999999999432 23543 1121 2357
Q ss_pred HHHHHccCcCCCEEEE
Q 009769 446 LDAASLLVKPGGVLVY 461 (526)
Q Consensus 446 L~~a~~~LkpGG~lvy 461 (526)
|+.....|-++++++.
T Consensus 197 l~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 197 LNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHCCS-TT-EEEE
T ss_pred HHHHHhhCCCCcEEEE
Confidence 9999999954444444
No 254
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.39 E-value=0.00025 Score=71.59 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=70.8
Q ss_pred CEEEEeCCchhHHHHH----HHHHcc---CCcEEEEEcCChhHHHHHHHHH--------------HHc---------C--
Q 009769 335 QSIVDCCAAPGGKTLY----MASCLS---GQGLVYAIDINKGRLRILNETA--------------KLH---------Q-- 382 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~----la~~~~---~~~~v~avD~s~~~l~~a~~n~--------------~~~---------g-- 382 (526)
-+|+..||++|-=.-. +.+.++ ...+|+|.|+|+..++.|++.. +++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 6999999999974333 333222 1358999999999999988751 000 0
Q ss_pred -----CCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 383 -----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 383 -----~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
+.+.|++.+.|+.+......+.||+|+|- + ++- ..+ .+.|.++++...+.|+|||
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR----N--vli-------yF~-------~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR----N--VMI-------YFD-------KTTQERILRRFVPLLKPDG 256 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHh----h--HHh-------cCC-------HHHHHHHHHHHHHHhCCCc
Confidence 22456777777766322123679999851 1 000 011 2346788999999999999
Q ss_pred EEEEEe
Q 009769 458 VLVYST 463 (526)
Q Consensus 458 ~lvyst 463 (526)
.|+...
T Consensus 257 ~L~lG~ 262 (287)
T PRK10611 257 LLFAGH 262 (287)
T ss_pred EEEEeC
Confidence 998654
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.38 E-value=0.00051 Score=61.65 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=50.9
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~ 396 (526)
+|||+|||.|..+..++.. .+.++++++|.++..++.+++|++.+++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999886 445699999999999999999999998876 7777766543
No 256
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.38 E-value=0.00026 Score=67.88 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
..+.||+|||.|..|-.+... --.+|-.+|..+..++.|++.+...+ ....++.+.-+.++.+. ..+||+|.+- -
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q-W 130 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-EGKYDLIWIQ-W 130 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----TT-EEEEEEE-S
T ss_pred cceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-CCcEeEEEeh-H
Confidence 469999999999999877543 34689999999999999987655421 22356777777777653 3689999862 1
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 414 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
|. | +.+.+++-. +|..+...|+|+|.+|.
T Consensus 131 ~l--g----------hLTD~dlv~-------fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 131 CL--G----------HLTDEDLVA-------FLKRCKQALKPNGVIVV 159 (218)
T ss_dssp -G--G----------GS-HHHHHH-------HHHHHHHHEEEEEEEEE
T ss_pred hh--c----------cCCHHHHHH-------HHHHHHHhCcCCcEEEE
Confidence 11 1 245555544 59999999999999885
No 257
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00019 Score=67.18 Aligned_cols=70 Identities=27% Similarity=0.260 Sum_probs=60.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
.|.+|||+|+|+|--++..+.. +...|++.|+.+.....++-|++.+|+. +.+++.|... . +..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g-~---~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG-S---PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC-C---CcceeEEEe
Confidence 4889999999999999887764 5789999999999999999999999986 7888888765 2 367999986
No 258
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.31 E-value=0.004 Score=59.65 Aligned_cols=125 Identities=17% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.+.++.|+||--|..+.++.+. +...++++.|++++.++.+.+|++++++..++++..+|....... ...+|.|++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI-- 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI-- 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE--
Confidence 4667999999999999999886 556799999999999999999999999999999999998665532 346898876
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEec
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 489 (526)
.|.|- .+-.+||++..+.|+.--++| +.|..+...+..||..| +|.+..
T Consensus 92 --AGMGG--------------------~lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L~~~-~~~I~~ 140 (226)
T COG2384 92 --AGMGG--------------------TLIREILEEGKEKLKGVERLI-----LQPNIHTYELREWLSAN-SYEIKA 140 (226)
T ss_pred --eCCcH--------------------HHHHHHHHHhhhhhcCcceEE-----ECCCCCHHHHHHHHHhC-Cceeee
Confidence 34433 122467888888888544666 45667777889999887 466654
No 259
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.30 E-value=0.0006 Score=66.44 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCCCC--EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCC--C------ccEEEEc
Q 009769 322 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--N------SVIRTIH 391 (526)
Q Consensus 322 s~l~~~~l~~~~g~--~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~--~------~~v~~~~ 391 (526)
...++..+++++|. +|||+-||-|.-++.+|.. +++|+++|.||-....++.-++++.- . .++++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 35666777777764 8999999999999999875 46899999999998888876655421 1 3689999
Q ss_pred CccccccccCCCCCcEEEEcCCC
Q 009769 392 ADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 392 ~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
+|..++.......||+|.+||-+
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 99999876446789999999987
No 260
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00014 Score=72.08 Aligned_cols=76 Identities=28% Similarity=0.346 Sum_probs=63.4
Q ss_pred CCCEEEEeCCchhHHHH-HHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 333 PGQSIVDCCAAPGGKTL-YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~-~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.|+.|.|+.||-|++|+ .+.. .+...|+|+|.+|..++.++++++.+++..+..++.+|.+.... ....|.|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhc--cCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheeec
Confidence 46899999999999999 5554 35789999999999999999999999988777788898877653 3567888765
Q ss_pred C
Q 009769 412 A 412 (526)
Q Consensus 412 ~ 412 (526)
.
T Consensus 270 L 270 (351)
T KOG1227|consen 270 L 270 (351)
T ss_pred c
Confidence 3
No 261
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.20 E-value=0.004 Score=56.17 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHc---cCCcEEEEEcCChhHHHHHHHHHHHcC--CCccEEEEcCccccccccCCCCCc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCD 406 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~---~~~~~v~avD~s~~~l~~a~~n~~~~g--~~~~v~~~~~D~~~~~~~~~~~fD 406 (526)
.+...|+|+|||-|..+..++..+ ....+|+++|.++..++.+.+..++.+ ....+.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 667899999999999999999844 246799999999999999999999988 43345555555443321 23455
Q ss_pred EEEEcCCC
Q 009769 407 KVLLDAPC 414 (526)
Q Consensus 407 ~Vl~D~Pc 414 (526)
.++-=-.|
T Consensus 102 ~~vgLHaC 109 (141)
T PF13679_consen 102 ILVGLHAC 109 (141)
T ss_pred EEEEeecc
Confidence 66544455
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00065 Score=65.75 Aligned_cols=96 Identities=28% Similarity=0.394 Sum_probs=67.6
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccE-EEEcCccccccccC-CCCCcEEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI-RTIHADLRTFADNS-TVKCDKVL 409 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v-~~~~~D~~~~~~~~-~~~fD~Vl 409 (526)
.+|..|||+|+.|||+|-.+.+. +..+|+|+|..-..+..- +..+.++ .....|++.+.+.. .+..|.|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~k------LR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWK------LRNDPRVIVLERTNVRYLTPEDFTEKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHh------HhcCCcEEEEecCChhhCCHHHcccCCCeEE
Confidence 35889999999999999999885 578999999987766542 1122223 34455666554332 45789999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
+|....++ ..+|..+..+++|+|.++
T Consensus 150 ~DvSFISL-------------------------~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 150 IDVSFISL-------------------------KLILPALLLLLKDGGDLV 175 (245)
T ss_pred EEeehhhH-------------------------HHHHHHHHHhcCCCceEE
Confidence 99887421 235777788888887766
No 263
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.15 E-value=0.00097 Score=71.88 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc------c-CCC
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------N-STV 403 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~------~-~~~ 403 (526)
++++..|||+||+||++....++.|+..+-|+|+|+-|-. .+++ +..++.|++.-.- . ...
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~-c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPN-CDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCc-cchhhhhhhHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999988999999997633 2344 3344555543110 0 124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+.|+||.|...+=.| .|. .+-..-..+-..-|..|..+|..||.+|--
T Consensus 110 ~advVLhDgapnVg~--------~w~---~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGG--------NWV---QDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CCcEEeecCCCccch--------hHH---HHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 579999985432222 243 233333344556688889999999997743
No 264
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.08 E-value=0.0016 Score=62.22 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCEEEEeCCchhHHHHHHH----HHcc---C-CcEEEEEcCChhHHHHHHHH--------------HHHcC---------
Q 009769 334 GQSIVDCCAAPGGKTLYMA----SCLS---G-QGLVYAIDINKGRLRILNET--------------AKLHQ--------- 382 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la----~~~~---~-~~~v~avD~s~~~l~~a~~n--------------~~~~g--------- 382 (526)
.-+|+.+||++|-=.-.+| +... + ..+|+|.|+|+..++.|++- .+++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999997443333 3111 1 35999999999999988762 12211
Q ss_pred ----CCccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCE
Q 009769 383 ----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 458 (526)
Q Consensus 383 ----~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~ 458 (526)
+.+.|++.+.|..+ .....+.||+|+|= +--+- .+ .+.|.++++.....|+|||.
T Consensus 112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CR-----------NVlIY--F~-------~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCR-----------NVLIY--FD-------PETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp E-HHHHTTEEEEE--TT--S------EEEEEE------------SSGGG--S--------HHHHHHHHHHHGGGEEEEEE
T ss_pred EChHHcCceEEEecccCC-CCcccCCccEEEec-----------CEEEE--eC-------HHHHHHHHHHHHHHcCCCCE
Confidence 01357788888877 22235789999851 11111 11 24577889999999999999
Q ss_pred EEEEe
Q 009769 459 LVYST 463 (526)
Q Consensus 459 lvyst 463 (526)
|+...
T Consensus 171 L~lG~ 175 (196)
T PF01739_consen 171 LFLGH 175 (196)
T ss_dssp EEE-T
T ss_pred EEEec
Confidence 99754
No 265
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.02 E-value=0.013 Score=54.48 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=89.4
Q ss_pred CCchhHHHHHHHHHccCCcEEEEEcC--ChhHHHH---HHHHHHHcCCCccEEEEcCccccccccC---CCCCcEEEEcC
Q 009769 341 CAAPGGKTLYMASCLSGQGLVYAIDI--NKGRLRI---LNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDA 412 (526)
Q Consensus 341 ~aG~G~~t~~la~~~~~~~~v~avD~--s~~~l~~---a~~n~~~~g~~~~v~~~~~D~~~~~~~~---~~~fD~Vl~D~ 412 (526)
|=|--.++..++...+....|+|.-. .....+. +..|++.+.-.+.......|+..+.... ..+||+|+.+-
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 33444566777776554556666544 3333332 3355555533332234567888876544 57899999999
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEecCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD 491 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 491 (526)
|+.|.|.- .....+.....+-..++..|..+|+++|.+..+-|.-.+-...++. .+++..++.+....
T Consensus 84 PH~G~~~~---------~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~--~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 84 PHVGGGSE---------DGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE--ELAAEAGLVLVRKV 151 (166)
T ss_pred CCCCCCcc---------chhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH--HHHHhcCCEEEEEe
Confidence 99874431 1234555566677889999999999999999998887764333333 45555677776543
No 266
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.98 E-value=0.0039 Score=62.30 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=69.5
Q ss_pred CCEEEEeCCchhH----HHHHHHHHccC----CcEEEEEcCChhHHHHHHHHHH----H-cCCC----------------
Q 009769 334 GQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAK----L-HQVN---------------- 384 (526)
Q Consensus 334 g~~VLDl~aG~G~----~t~~la~~~~~----~~~v~avD~s~~~l~~a~~n~~----~-~g~~---------------- 384 (526)
.-+|+-+||++|- .++.+.+.++. ..+|+|.|+|...|+.|+.-.= . -+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4589999999996 44455555432 5789999999999998875210 0 1111
Q ss_pred -------ccEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCC
Q 009769 385 -------SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 457 (526)
Q Consensus 385 -------~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG 457 (526)
..|.+...|...-.. ..+.||+|+|= +--+-. -...|.++++..+..|+|||
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCR-----------NVLIYF---------d~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCR-----------NVLIYF---------DEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEc-----------ceEEee---------CHHHHHHHHHHHHHHhCCCC
Confidence 124444455444332 34679999851 111111 12458899999999999999
Q ss_pred EEEEE
Q 009769 458 VLVYS 462 (526)
Q Consensus 458 ~lvys 462 (526)
.|+.-
T Consensus 236 ~LflG 240 (268)
T COG1352 236 LLFLG 240 (268)
T ss_pred EEEEc
Confidence 99964
No 267
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0069 Score=57.68 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=71.8
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCcEEEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 410 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~fD~Vl~ 410 (526)
..|.+||.+|-|.|.....+-+. + -.+-+-||.+++.++.+++..-+-. .+|.+..+--.+..+. .++.||.|+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~-p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-P-PDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-C-CcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccccccCcceeEe
Confidence 46889999999999998888664 3 3566778999999998887754422 2354544433222222 2467999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|.-. ++.+..+.+-+++.++|||+|.+-|.
T Consensus 176 DTy~----------------------e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYS----------------------ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echh----------------------hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 8542 11222334577999999999988774
No 268
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.90 E-value=0.0035 Score=64.09 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=56.3
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCcEEEEcCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 414 (526)
+|+|+|||.||+++.+.+. +--.+.|+|+++.+.+..+.|.. ....+|+.++.... +..+|+++.-|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6999999999999888764 23478999999999999998876 35678887765332 1159999999999
Q ss_pred CCCccccC
Q 009769 415 SGLGVLSK 422 (526)
Q Consensus 415 sg~G~l~~ 422 (526)
.+....++
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 88777654
No 269
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.88 E-value=0.0095 Score=59.72 Aligned_cols=107 Identities=20% Similarity=0.180 Sum_probs=65.6
Q ss_pred CEEEEeCCchhHHHHH-HHHHccCCcEEEEEcCChhHHHHHHHHHH-HcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 335 QSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~-la~~~~~~~~v~avD~s~~~l~~a~~n~~-~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.+|+=+||||=-.|.. +++....+..|+++|+++.+.+.+++.++ ..|+..++.++++|+.+.... -..||+|++-+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEEEEhh
Confidence 4999999998877654 44443445789999999999999999888 677777899999999876533 25799999854
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
--. . +.+. -.++|.+..+.++||..++|=+
T Consensus 201 lVg---~-----------~~e~-------K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVG---M-----------DAEP-------KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S------------------S-------HHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcc---c-----------ccch-------HHHHHHHHHhhCCCCcEEEEec
Confidence 332 1 0011 1257999999999999999753
No 270
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.72 E-value=0.0099 Score=56.75 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=62.4
Q ss_pred HhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCc
Q 009769 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD 406 (526)
.+....++-.|-|+|||-+..+.. +.+.-+|...|+... +.. ++.+|+.+.+- .++.+|
T Consensus 66 ~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~--------------n~~--Vtacdia~vPL-~~~svD 124 (219)
T PF05148_consen 66 WLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP--------------NPR--VTACDIANVPL-EDESVD 124 (219)
T ss_dssp HHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------STT--EEES-TTS-S---TT-EE
T ss_pred HHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC--------------CCC--EEEecCccCcC-CCCcee
Confidence 333344467999999999887733 334468999999642 222 45688877653 357899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe-CCCChhhhHHHHHHHHHhCCCC
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST-CSIDPEENEERVEAFLLRHPEF 485 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst-cs~~~~Ene~vv~~~l~~~~~~ 485 (526)
+++.--.-. |+ .| ..+|.+|.++|||||.|.++. +|-.. +.+...+.+.+. +|
T Consensus 125 v~VfcLSLM--GT-------n~--------------~~fi~EA~RvLK~~G~L~IAEV~SRf~--~~~~F~~~~~~~-GF 178 (219)
T PF05148_consen 125 VAVFCLSLM--GT-------NW--------------PDFIREANRVLKPGGILKIAEVKSRFE--NVKQFIKALKKL-GF 178 (219)
T ss_dssp EEEEES-----SS--------H--------------HHHHHHHHHHEEEEEEEEEEEEGGG-S---HHHHHHHHHCT-TE
T ss_pred EEEEEhhhh--CC-------Cc--------------HHHHHHHHheeccCcEEEEEEecccCc--CHHHHHHHHHHC-CC
Confidence 998733222 32 11 257999999999999998764 44322 333444445443 56
Q ss_pred eEec
Q 009769 486 SIDP 489 (526)
Q Consensus 486 ~~~~ 489 (526)
++..
T Consensus 179 ~~~~ 182 (219)
T PF05148_consen 179 KLKS 182 (219)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 6643
No 271
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.63 E-value=0.027 Score=48.81 Aligned_cols=107 Identities=19% Similarity=0.129 Sum_probs=67.4
Q ss_pred EEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc-cccCC-CCCcEEEEcCCC
Q 009769 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNST-VKCDKVLLDAPC 414 (526)
Q Consensus 337 VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~-~~~~~-~~fD~Vl~D~Pc 414 (526)
++|+|||+|..+ .++........++++|.++.++..........+... +.+...|.... ..... ..||.+......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999987 444442222389999999999998554443322211 46667776552 22222 368888332222
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~ 468 (526)
. |. . ....+..+.+.++|+|.+++.......
T Consensus 130 ~------------~~-~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 H------------LL-P----------PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred h------------cC-C----------HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 1 00 0 234688889999999999988776443
No 272
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.63 E-value=0.011 Score=59.75 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=79.0
Q ss_pred ccccceeeccch-HHHHHHhcCCCCCCEEEEeCCchhH-HHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccE
Q 009769 310 LKEGLCAVQDES-AGLVVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387 (526)
Q Consensus 310 ~~~G~~~iQd~~-s~l~~~~l~~~~g~~VLDl~aG~G~-~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v 387 (526)
|.+|-+ +|+.+ +..+....++++|.+||=+||||=| .|...|+.+ +..+|+.+|+++.|++.|++ +|.+...
T Consensus 146 ~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 146 FEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred hhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 334433 34443 3345556678999999999999966 455556655 47899999999999998775 6776322
Q ss_pred EEEcCc----ccccccc-C-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 388 RTIHAD----LRTFADN-S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 388 ~~~~~D----~~~~~~~-~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
..-+.+ ..+.... . ...||..+ .|||... -++.|...++.||+++.
T Consensus 220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~---dCsG~~~-------------------------~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 220 PSSHKSSPQELAELVEKALGKKQPDVTF---DCSGAEV-------------------------TIRAAIKATRSGGTVVL 271 (354)
T ss_pred eccccccHHHHHHHHHhhccccCCCeEE---EccCchH-------------------------HHHHHHHHhccCCEEEE
Confidence 222211 1111111 1 24588887 3887443 36788999999999887
Q ss_pred EeC
Q 009769 462 STC 464 (526)
Q Consensus 462 stc 464 (526)
.-|
T Consensus 272 vg~ 274 (354)
T KOG0024|consen 272 VGM 274 (354)
T ss_pred ecc
Confidence 655
No 273
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.60 E-value=0.015 Score=65.95 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=84.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc------C-----CcEEEEEcCChhHHHHHHHH--------------HHH-----cCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS------G-----QGLVYAIDINKGRLRILNET--------------AKL-----HQV 383 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~------~-----~~~v~avD~s~~~l~~a~~n--------------~~~-----~g~ 383 (526)
.-+|+|+|-|+|...+...+... + .-+++++|..|-..+.+.+. .+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 36899999999998877766551 1 34899999866332222221 111 122
Q ss_pred ------Cc--cEEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcC
Q 009769 384 ------NS--VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 455 (526)
Q Consensus 384 ------~~--~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~Lkp 455 (526)
.+ .+++..+|+.+........||.+++|+-. -.++|++ |. .+++....++++|
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-----P~~np~~-W~-------------~~~~~~l~~~~~~ 198 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-----PAKNPDM-WS-------------PNLFNALARLARP 198 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-----CccChhh-cc-------------HHHHHHHHHHhCC
Confidence 11 24567789988766555679999999643 2367776 54 3578999999999
Q ss_pred CCEEEEEeCCCChhhhHHHHHHHHHhCCCCeEecC
Q 009769 456 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 490 (526)
Q Consensus 456 GG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~ 490 (526)
||+++-.|++ ..|.+-|... +|++...
T Consensus 199 ~~~~~t~t~a-------~~vr~~l~~~-GF~v~~~ 225 (662)
T PRK01747 199 GATLATFTSA-------GFVRRGLQEA-GFTVRKV 225 (662)
T ss_pred CCEEEEeehH-------HHHHHHHHHc-CCeeeec
Confidence 9999955543 3455555544 5666544
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.54 E-value=0.0042 Score=66.25 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEE---cCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAI---DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~av---D~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
..+||+|||.|.++.+|.++ +-.++.+ |.++..++.+- .-|+...+.++ ..+-.+.....||+|-
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfal----eRGvpa~~~~~---~s~rLPfp~~~fDmvH-- 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFAL----ERGVPAMIGVL---GSQRLPFPSNAFDMVH-- 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhh----hcCcchhhhhh---ccccccCCccchhhhh--
Confidence 47999999999999999875 2233222 44444444432 23665322111 1122233457899886
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
||.-.+ .|..... -+|-++-++|+|||++|+|.--+.
T Consensus 187 --csrc~i-------~W~~~~g----------~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 --CSRCLI-------PWHPNDG----------FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cccccc-------cchhccc----------ceeehhhhhhccCceEEecCCccc
Confidence 443222 3542221 257788999999999999977665
No 275
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.094 Score=49.40 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=36.0
Q ss_pred hcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCCh
Q 009769 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~ 368 (526)
..+++||.+|+|+--|.|.+|..++..++++|.|+++=-.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 45688999999999999999999999999999999875543
No 276
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.30 E-value=0.017 Score=58.12 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=40.8
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~ 381 (526)
.+|||+|||||.-+.++.+.++.-.+++++|.|+.+++.++..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999988888887776678999999999999988877654
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.27 E-value=0.024 Score=58.37 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=66.3
Q ss_pred cCCCCCCEEEEeCCc-hhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcE
Q 009769 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 329 l~~~~g~~VLDl~aG-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
.+.+||++|+=.|+| -|..++++|..++ .+|+++|++++.++.++ ++|.+..+.....|.... ..+.||.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~~~~~~~~---~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSSDSDALEA---VKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcEEEEcCCchhhHH---hHhhCcE
Confidence 457899999998887 4447788888764 89999999999988765 556653222211222221 1234999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|+.-.+ . ..++.+++.|++||+++..
T Consensus 233 ii~tv~-~----------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 233 IIDTVG-P----------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred EEECCC-h----------------------------hhHHHHHHHHhcCCEEEEE
Confidence 987555 2 2378889999999999853
No 278
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.24 E-value=0.034 Score=56.99 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=73.3
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 414 (526)
...+|+|+|.|..+-.+....+ +|-+++.+...+-.+..+.. .| |+.+-+|+++-.+ +-|+|++= -|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~mk-Wi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWMK-WI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEEE-ee
Confidence 7899999999999999988643 58888888888877766665 55 5567788876533 34677651 11
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 415 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 415 sg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
...++.+++.. ||+++++.|+|||.++...+-+
T Consensus 246 ------------LhdwtDedcvk-------iLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 246 ------------LHDWTDEDCVK-------ILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred ------------cccCChHHHHH-------HHHHHHHhCCCCCEEEEEeccC
Confidence 11355666655 4999999999999999887743
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.13 E-value=0.025 Score=55.90 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCcEEEEc
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 411 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~fD~Vl~D 411 (526)
.|..|+=+| ----.++++ .+.+-.-+|..+|+++..+...++-++.+|++| ++.+..|.++..+. ...+||..+.|
T Consensus 152 ~gK~I~vvG-DDDLtsia~-aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIAL-ALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHH-HhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeeecC
Confidence 466788777 222333333 333445689999999999999999999999987 88889999886543 36799999999
Q ss_pred CCCC
Q 009769 412 APCS 415 (526)
Q Consensus 412 ~Pcs 415 (526)
||.+
T Consensus 229 PpeT 232 (354)
T COG1568 229 PPET 232 (354)
T ss_pred chhh
Confidence 9984
No 280
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.02 E-value=0.0088 Score=61.52 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred EEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCCCCC
Q 009769 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 416 (526)
Q Consensus 337 VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg 416 (526)
|+|++||.||.+.-+-+. +--.+.++|+++.+++..+.|... .++++|+.++.......+|+++.-|||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 689999999999887653 334567899999999998887532 23467877765322246899999999988
Q ss_pred CccccCC
Q 009769 417 LGVLSKR 423 (526)
Q Consensus 417 ~G~l~~~ 423 (526)
.....++
T Consensus 72 fS~ag~~ 78 (315)
T TIGR00675 72 FSIAGKR 78 (315)
T ss_pred cchhccc
Confidence 7665443
No 281
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.01 E-value=0.0023 Score=66.39 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=59.3
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCcc-EEEEcCccccccc
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD 399 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~-v~~~~~D~~~~~~ 399 (526)
.++|+.|-|+|||.|-+++-++.. .++|+++|.++++++.++.|++.+.+... |++++.|+..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 568999999999999999998875 48999999999999999999999998755 8999999988763
No 282
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.90 E-value=0.021 Score=59.57 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=82.6
Q ss_pred CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEE-
Q 009769 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV- 408 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~V- 408 (526)
...++..++|++||-|+....++.. ....++++|.++..+..........++++...++.+|+.+.+. ....||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v~ 183 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGVR 183 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcEE
Confidence 4567889999999999999999886 3578999999999999999988888888766677788777653 34679987
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
.+|.-|-. |+ ....+.+.++.+||||..+
T Consensus 184 ~ld~~~~~-------~~----------------~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 184 FLEVVCHA-------PD----------------LEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred EEeecccC-------Cc----------------HHHHHHHHhcccCCCceEE
Confidence 46776632 10 1135788899999999887
No 283
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.84 E-value=0.016 Score=57.55 Aligned_cols=138 Identities=21% Similarity=0.184 Sum_probs=77.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC---------------------------c
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------------------S 385 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~---------------------------~ 385 (526)
.|.++||+||||-..-...|. .--.+|+..|..+.-.+.+++-++.-+.- .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~--~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSAC--EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGG--GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHH--HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 478999999999443322222 22457999999998888766654432210 0
Q ss_pred cE-EEEcCccccccccC-----CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEE
Q 009769 386 VI-RTIHADLRTFADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 459 (526)
Q Consensus 386 ~v-~~~~~D~~~~~~~~-----~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~l 459 (526)
.| .++.+|+++..+.. +.+||.|++- -| .+-.-.-...+...+++..++|||||.|
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~-fc-----------------LE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS-FC-----------------LESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE-SS-----------------HHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhh-HH-----------------HHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 12 36677777654332 2358888641 11 0111111223567799999999999999
Q ss_pred EEEeCC------C------ChhhhHHHHHHHHHhCCCCeEecCC
Q 009769 460 VYSTCS------I------DPEENEERVEAFLLRHPEFSIDPAD 491 (526)
Q Consensus 460 vystcs------~------~~~Ene~vv~~~l~~~~~~~~~~~~ 491 (526)
+....- + .-.-|++.|...|+.. ++.+....
T Consensus 196 il~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~~ 238 (256)
T PF01234_consen 196 ILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDLE 238 (256)
T ss_dssp EEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEEE
T ss_pred EEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEecc
Confidence 976421 0 1124567788888765 67776543
No 284
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.80 E-value=0.018 Score=60.06 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=52.4
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
.|||+|+|+|-.++..+... .-.++|+|.-..|...+++-..++|.+++|++++.-.++..
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 69999999999998777753 56899999999999999999999999988988876555543
No 285
>PHA01634 hypothetical protein
Probab=95.78 E-value=0.044 Score=48.03 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=54.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.+.+|+|+|++-|..++.++.. +..+|+++|.++...+..++|++.+.+-+... ... ++.. .-+.||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~-~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNG-EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccc-cCCCcceEEEE
Confidence 3789999999999999999864 67899999999999999999998875533221 112 2222 23679988887
No 286
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.022 Score=58.95 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=61.0
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CC-CCcEEEEcC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV-KCDKVLLDA 412 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~-~fD~Vl~D~ 412 (526)
-+++|+|||.||..+-+... +--.+.++|+++.+++..+.|... ..++..|...+.... .. .+|+|+--|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 47999999999999777653 245789999999999998887654 234567776654322 12 799999999
Q ss_pred CCCCCccccCC
Q 009769 413 PCSGLGVLSKR 423 (526)
Q Consensus 413 Pcsg~G~l~~~ 423 (526)
||-+..+..++
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99877666554
No 287
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.56 E-value=0.046 Score=53.64 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
....|-|+|||-+-.+. .....|+.+|+.+ ++. +++.+|+.+.+- .+++.|+++.-.
T Consensus 180 ~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a--------------~~~--~V~~cDm~~vPl-~d~svDvaV~CL 236 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS------SERHKVHSFDLVA--------------VNE--RVIACDMRNVPL-EDESVDVAVFCL 236 (325)
T ss_pred CceEEEecccchhhhhh------ccccceeeeeeec--------------CCC--ceeeccccCCcC-ccCcccEEEeeH
Confidence 34689999999987654 1245799999853 222 456789988653 468899988622
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.- .|+ ++ ..++.+|.++||+||.+.++..+
T Consensus 237 SL--Mgt--------------n~-------~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 237 SL--MGT--------------NL-------ADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred hh--hcc--------------cH-------HHHHHHHHHHhccCceEEEEehh
Confidence 22 222 11 35799999999999999887654
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=95.47 E-value=0.024 Score=57.40 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHH
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~ 380 (526)
.+|+.|||.+||+|..++++.++ +-+.+|+|++++-++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 68999999999999888766554 46899999999999999998754
No 289
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.38 E-value=0.088 Score=56.89 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-------------
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------------- 400 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~------------- 400 (526)
.-+++|+|||.||+++.+-.. +.-.|.++|+++.+.+..+.|.... .+ ...+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p~-~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--PA-THRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--Cc-cceeccChhhCccccccccchhhhhhh
Confidence 458999999999999887553 3347889999999999888874211 11 23445666655311
Q ss_pred ---CCCCCcEEEEcCCCCCCcccc
Q 009769 401 ---STVKCDKVLLDAPCSGLGVLS 421 (526)
Q Consensus 401 ---~~~~fD~Vl~D~Pcsg~G~l~ 421 (526)
....+|+++.-|||-+..+..
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhc
Confidence 112589999999997765543
No 290
>PRK11524 putative methyltransferase; Provisional
Probab=95.36 E-value=0.033 Score=56.39 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=46.5
Q ss_pred EEEEcCccccccccC-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 387 IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 387 v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.+++++|+.++.... .++||+|++|||+.. |.-.....-.|. ..+.......++..+.++|||||.+++. |.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~-~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~ 81 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNI-GKNFDGLIEAWK-----EDLFIDWLYEWIDECHRVLKKQGTMYIM-NS 81 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCccc-cccccccccccc-----HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cC
Confidence 467899998865433 568999999999942 110001111221 1223333467899999999999998864 44
Q ss_pred C
Q 009769 466 I 466 (526)
Q Consensus 466 ~ 466 (526)
.
T Consensus 82 ~ 82 (284)
T PRK11524 82 T 82 (284)
T ss_pred c
Confidence 3
No 291
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.31 E-value=0.47 Score=43.86 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=76.8
Q ss_pred eeccchHHHHHHhcC--CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCc
Q 009769 316 AVQDESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (526)
Q Consensus 316 ~iQd~~s~l~~~~l~--~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D 393 (526)
+.-|+++..++..+. ..++.+|+=+||=+-...+.- ......+++..|++.+-- .+|-+ .++.-|
T Consensus 6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~~~---~F~fyD 72 (162)
T PF10237_consen 6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFGGD---EFVFYD 72 (162)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcCCc---ceEECC
Confidence 333556555555443 245679999988876666544 223567899999986442 33322 355556
Q ss_pred ccccc---ccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhh
Q 009769 394 LRTFA---DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 470 (526)
Q Consensus 394 ~~~~~---~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~E 470 (526)
..... ....++||+|++|||.-. + +.+......+-.++|+++.++.+| .++
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~----------------~------ec~~k~a~ti~~L~k~~~kii~~T----g~~ 126 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLS----------------E------ECLTKTAETIRLLLKPGGKIILCT----GEE 126 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCC----------------H------HHHHHHHHHHHHHhCccceEEEec----HHH
Confidence 54432 222478999999999832 1 112233444555667888888754 577
Q ss_pred hHHHHHHHH
Q 009769 471 NEERVEAFL 479 (526)
Q Consensus 471 ne~vv~~~l 479 (526)
+++.+.+.+
T Consensus 127 ~~~~~~~ll 135 (162)
T PF10237_consen 127 MEELIKKLL 135 (162)
T ss_pred HHHHHHHHh
Confidence 788887777
No 292
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.24 E-value=0.028 Score=53.99 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHH
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~ 376 (526)
..+|+.|||.+||+|+.+.++.++ +-+.+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 367999999999999888766554 4689999999999998864
No 293
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.94 E-value=0.4 Score=48.01 Aligned_cols=42 Identities=12% Similarity=-0.119 Sum_probs=35.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
...+||=.|||-|..+..+|.+ +-.+.|+|.|--|+-...-.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFI 97 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHH
Confidence 3568999999999999999986 57899999999887654443
No 294
>PRK13699 putative methylase; Provisional
Probab=94.71 E-value=0.061 Score=52.66 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g 382 (526)
..+|+.|||.+||+|....++.+. +.+.+|+|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 468999999999999888776653 4678999999999999988877643
No 295
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.31 E-value=0.066 Score=57.35 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=75.9
Q ss_pred EEEEeCCchhHH---HHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 336 SIVDCCAAPGGK---TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 336 ~VLDl~aG~G~~---t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.|+=+|+|.|-. ++.+|+.....-+++++|.+|.++..++. .+....+++|+++..|++.+... .++.|.++..-
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VSEL 447 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVSEL 447 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHHHh
Confidence 578899999874 45666666667899999999999998876 45555667899999999998742 36788876321
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+|.+..+. .++ +-|+.+.++|||.|+.+-+
T Consensus 448 ----LGSFGDNE-----LSP-----------ECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 ----LGSFGDNE-----LSP-----------ECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ----hccccCcc-----CCH-----------HHHHHHHhhcCCCceEccc
Confidence 23333321 112 3388899999999998833
No 296
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.19 E-value=0.058 Score=47.62 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=53.0
Q ss_pred EEEEcCccccccccCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 387 v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
+++..+|+.+........||.|++|+-. -.++|++ |. .+++....++++|||+++-.||+
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFs-----P~~nPel-Ws-------------~e~~~~l~~~~~~~~~l~Tys~a- 92 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFS-----PAKNPEL-WS-------------EELFKKLARLSKPGGTLATYSSA- 92 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS------TTTSGGG-SS-------------HHHHHHHHHHEEEEEEEEES--B-
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCC-----CcCCccc-CC-------------HHHHHHHHHHhCCCcEEEEeech-
Confidence 5678899988776666789999999754 3567874 54 35789999999999998855443
Q ss_pred ChhhhHHHHHHHHHhCCCCeEecCC
Q 009769 467 DPEENEERVEAFLLRHPEFSIDPAD 491 (526)
Q Consensus 467 ~~~Ene~vv~~~l~~~~~~~~~~~~ 491 (526)
..|.+.|... +|.+...+
T Consensus 93 ------~~Vr~~L~~a-GF~v~~~~ 110 (124)
T PF05430_consen 93 ------GAVRRALQQA-GFEVEKVP 110 (124)
T ss_dssp ------HHHHHHHHHC-TEEEEEEE
T ss_pred ------HHHHHHHHHc-CCEEEEcC
Confidence 3577777765 78887654
No 297
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.08 E-value=0.063 Score=46.98 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=58.5
Q ss_pred chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-C-CCCCcEEEEcCCCCCCccc
Q 009769 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S-TVKCDKVLLDAPCSGLGVL 420 (526)
Q Consensus 343 G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~-~~~fD~Vl~D~Pcsg~G~l 420 (526)
|.|..++.+|+.++ .+|+++|.++.+++.++ ++|....+.....|..+.... . ...+|.|+- |+|.+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~-- 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHVIDYSDDDFVEQIRELTGGRGVDVVID---CVGSG-- 69 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH--
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccccccccccccccccccccccccceEEEE---ecCcH--
Confidence 56889999999865 89999999999987754 567553221112222221111 1 247998864 54422
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 421 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 421 ~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
..++.+.++++++|+++.....
T Consensus 70 -----------------------~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 70 -----------------------DTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -----------------------HHHHHHHHHEEEEEEEEEESST
T ss_pred -----------------------HHHHHHHHHhccCCEEEEEEcc
Confidence 2488899999999999965443
No 298
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.99 E-value=0.13 Score=50.69 Aligned_cols=73 Identities=21% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
+..+|+|+|||-=-+++..... .++..++|+||+...++.+...+..++... ++...|...-.. ....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSHT--TSEESEEEE
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccCC--CCCcchhhH
Confidence 3569999999998888766543 345799999999999999999999999874 455567655432 355788775
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.84 E-value=0.26 Score=51.47 Aligned_cols=103 Identities=24% Similarity=0.324 Sum_probs=65.6
Q ss_pred CCCCCCEEEEeCCchhHH-HHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC-cccc-cccc-CCCCC
Q 009769 330 DPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT-FADN-STVKC 405 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~-t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~-D~~~-~~~~-~~~~f 405 (526)
...++.+|+=+||||=|. +..+++. .+..+|+++|.++.+++.+++. .+.. .+..... |... .... ....|
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~---~g~~-~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA---GGAD-VVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh---CCCe-EeecCccccHHHHHHHHhCCCCC
Confidence 344556999999999554 4566665 4578999999999999988763 2222 1111111 1111 1111 12369
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
|.|+- |+|.. ..+..+.++++|||++++.--.
T Consensus 240 D~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 240 DVVIE---AVGSP-------------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 99974 66511 1488899999999999976544
No 300
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=93.77 E-value=0.036 Score=52.86 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=65.2
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc-----
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----- 399 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~----- 399 (526)
+...+.+.+|...+|+--|.||.|..+.+. .+..++++.|.+|-+-+.+.......--. ++..+.+.+.....
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~~-~l~a~Lg~Fs~~~~l~~~~ 112 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMHP-TLKAVLGNFSYIKSLIADT 112 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcch-hHHHHHhhhHHHHHHHHHh
Confidence 356778899999999999999999999987 45789999999999988887766432211 12222333322211
Q ss_pred -cCCCCCcEEEEcCCCCCC
Q 009769 400 -NSTVKCDKVLLDAPCSGL 417 (526)
Q Consensus 400 -~~~~~fD~Vl~D~Pcsg~ 417 (526)
..+..||.|++|--||+.
T Consensus 113 gl~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 113 GLLDVGVDGILMDLGCSSM 131 (303)
T ss_pred CCCcCCcceEEeecCcccc
Confidence 125689999999999864
No 301
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.51 E-value=0.11 Score=50.27 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHc-CCCccEEEEcC-ccccccc---cCCCCCcE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHA-DLRTFAD---NSTVKCDK 407 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~-g~~~~v~~~~~-D~~~~~~---~~~~~fD~ 407 (526)
++-++||+|.|.-..=-.+..++- ..+-++.|+++..++.|+.++..+ ++.+.|++... |-..+.+ ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999886554333333322 468899999999999999999988 77766666432 3222211 12478999
Q ss_pred EEEcCCCCC
Q 009769 408 VLLDAPCSG 416 (526)
Q Consensus 408 Vl~D~Pcsg 416 (526)
++||||.-+
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999999854
No 302
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.37 E-value=0.57 Score=45.05 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred eccchHHHHHHhcCCCCCCEEEEeCCchhH--HHHH--HHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC
Q 009769 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGG--KTLY--MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (526)
Q Consensus 317 iQd~~s~l~~~~l~~~~g~~VLDl~aG~G~--~t~~--la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~ 392 (526)
.|...+-++..+..-..-..+++.+|+-|. .|+. .|.+ +-+|++++|-.++..+...++.+..+|+.+.++|+.+
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg 103 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVG 103 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccccccceEEec
Confidence 345556666666554555689999766432 3433 3333 3468999999999999899999998998877798888
Q ss_pred ccc-cccccCCCCCcEEEEc
Q 009769 393 DLR-TFADNSTVKCDKVLLD 411 (526)
Q Consensus 393 D~~-~~~~~~~~~fD~Vl~D 411 (526)
|.. +....+ ...|.+++|
T Consensus 104 ~~~e~~~~~~-~~iDF~vVD 122 (218)
T PF07279_consen 104 EAPEEVMPGL-KGIDFVVVD 122 (218)
T ss_pred CCHHHHHhhc-cCCCEEEEe
Confidence 853 344333 568999998
No 303
>PRK13699 putative methylase; Provisional
Probab=93.34 E-value=0.11 Score=50.72 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=44.3
Q ss_pred EEEcCccccccccC-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 388 RTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 388 ~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
+++++|+.+..... ++++|+|+.|||+. .|.-.+... .+ .. ....+.....+.++.++|||||.++. -|+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~-~~--~~---~~~~ew~~~~l~E~~RVLKpgg~l~i-f~~~ 74 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR-TI--AG---DKTDEWLQPACNEMYRVLKKDALMVS-FYGW 74 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc-cc--cc---ccHHHHHHHHHHHHHHHcCCCCEEEE-Eecc
Confidence 57789998865433 67899999999994 222111000 00 00 11223345778999999999987763 4554
Q ss_pred C
Q 009769 467 D 467 (526)
Q Consensus 467 ~ 467 (526)
.
T Consensus 75 ~ 75 (227)
T PRK13699 75 N 75 (227)
T ss_pred c
Confidence 4
No 304
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.05 E-value=0.65 Score=48.30 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=60.8
Q ss_pred hcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-cc-CCCC
Q 009769 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DN-STVK 404 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-~~-~~~~ 404 (526)
...+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++.+++.++ .+|.+..+.....|..... .. ....
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 34567899999987643 334456666542 336999999999988764 4676432221112221111 11 1235
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+|.|+ | |+|.. ..+..++..+++||+++..
T Consensus 246 ~d~vi-d--~~g~~-------------------------~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVI-D--AVGRP-------------------------ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEE-E--CCCCH-------------------------HHHHHHHHHhccCCEEEEE
Confidence 89876 4 55421 1266778899999998854
No 305
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.93 E-value=0.68 Score=45.83 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=76.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc----CCcEEEEEcCC--------------------------hhHHHHHHHHHHHcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDIN--------------------------KGRLRILNETAKLHQ 382 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~----~~~~v~avD~s--------------------------~~~l~~a~~n~~~~g 382 (526)
|| .|+++|+--|+.++.++..+. ..-+|+++|-= .-.++..++|+.++|
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 45 799999999998877765542 24578888851 114566677777777
Q ss_pred C-CccEEEEcCccccccccC-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 383 V-NSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 383 ~-~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
+ .++++++.+++.+-.+.. ..++-++-+|... .+.....|+..+..|.|||+++
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl------------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL------------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S------------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc------------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 5 346899999987654432 3455555566433 2234466899999999999999
Q ss_pred EEeCCCChhhhHHHHHHHHHhCC
Q 009769 461 YSTCSIDPEENEERVEAFLLRHP 483 (526)
Q Consensus 461 ystcs~~~~Ene~vv~~~l~~~~ 483 (526)
+-.... +.. ...|.+|.+++.
T Consensus 210 ~DDY~~-~gc-r~AvdeF~~~~g 230 (248)
T PF05711_consen 210 FDDYGH-PGC-RKAVDEFRAEHG 230 (248)
T ss_dssp ESSTTT-HHH-HHHHHHHHHHTT
T ss_pred EeCCCC-hHH-HHHHHHHHHHcC
Confidence 877655 443 345678888773
No 306
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.72 E-value=1.1 Score=44.82 Aligned_cols=112 Identities=20% Similarity=0.113 Sum_probs=64.7
Q ss_pred CEEEEeCCchh--HHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-----CCCCc-
Q 009769 335 QSIVDCCAAPG--GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-----TVKCD- 406 (526)
Q Consensus 335 ~~VLDl~aG~G--~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-----~~~fD- 406 (526)
...||+|||-= +.+-++|+...+..+|+-+|++|-.+..++..+....- ++..++++|+++...-. .+.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 57999999954 36678888888999999999999999888887766532 24788999998754321 11222
Q ss_pred ----EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCC
Q 009769 407 ----KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466 (526)
Q Consensus 407 ----~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~ 466 (526)
.|++. |++..-+| .++. ..++......|.||.+|++|..+-
T Consensus 149 ~rPVavll~------~vLh~v~D------~~dp-------~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLV------AVLHFVPD------DDDP-------AGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEEC------T-GGGS-C------GCTH-------HHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeee------eeeccCCC------ccCH-------HHHHHHHHHhCCCCceEEEEecCC
Confidence 23331 22222221 1222 246888999999999999987663
No 307
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.67 E-value=1.3 Score=45.60 Aligned_cols=93 Identities=18% Similarity=0.096 Sum_probs=58.7
Q ss_pred hcCCCCCCEEEEeCCchhH-HHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCc
Q 009769 328 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~-~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD 406 (526)
...+++|++||=.|+|+-+ .+.++|+.++ .+|++++.++.+++.+ +.+|.+..+ .. .+. ....+|
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~vi---~~--~~~---~~~~~d 225 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAASAG---GA--YDT---PPEPLD 225 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCceec---cc--ccc---Ccccce
Confidence 3567889999999875433 4456666543 5799999999887654 557776322 11 111 113578
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.++. |++.| ..+..+++.|++||+++..
T Consensus 226 ~~i~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAIL---FAPAG-------------------------GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEE---CCCcH-------------------------HHHHHHHHhhCCCcEEEEE
Confidence 6653 22111 1377889999999998753
No 308
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=92.44 E-value=0.025 Score=53.61 Aligned_cols=93 Identities=28% Similarity=0.406 Sum_probs=58.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
..++||+|||-|-.|.+++-.+ .+|+|.|.|..|...++. .+.. .+..+ + +.. .+-+||+|++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k----k~yn-Vl~~~--e---w~~-t~~k~dli~c--- 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK----KNYN-VLTEI--E---WLQ-TDVKLDLILC--- 175 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh----cCCc-eeeeh--h---hhh-cCceeehHHH---
Confidence 3589999999999999998764 469999999988876653 3332 12211 1 111 1246888752
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcC-CCEEEEE
Q 009769 414 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP-GGVLVYS 462 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~Lkp-GG~lvys 462 (526)
..++.|.-+ -..+|+.....|.| +|+++.+
T Consensus 176 ---lNlLDRc~~----------------p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 176 ---LNLLDRCFD----------------PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ---HHHHHhhcC----------------hHHHHHHHHHHhccCCCcEEEE
Confidence 111111111 12468888888998 8887644
No 309
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.35 E-value=0.16 Score=49.12 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=66.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 413 (526)
...++|+||+-|...-|+... +-++++-+|.|-.|++.++.. +..++. +....+|-..+. ....+||+||.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld-f~ens~DLiis--- 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD-FKENSVDLIIS--- 143 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc-ccccchhhhhh---
Confidence 457999999999999988764 467899999999999876542 122322 334456654433 33578999984
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 414 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 414 csg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+.+ +.|.-+.. .-+..+...|||.|.++-
T Consensus 144 --Sls-------lHW~NdLP----------g~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 144 --SLS-------LHWTNDLP----------GSMIQCKLALKPDGLFIA 172 (325)
T ss_pred --hhh-------hhhhccCc----------hHHHHHHHhcCCCccchh
Confidence 222 24532211 125667888999998883
No 310
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.23 E-value=0.48 Score=47.55 Aligned_cols=110 Identities=10% Similarity=0.080 Sum_probs=82.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCC--C-ccEEEEcCccccccccC-CCCCcEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--N-SVIRTIHADLRTFADNS-TVKCDKV 408 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~--~-~~v~~~~~D~~~~~~~~-~~~fD~V 408 (526)
.-++||=+|-|-|+..-..+.+ ..-+.|+-+|++..-++..++-+..+-. . .+|.+..+|...+.... .+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3468999999999988766665 4457899999999999988887665432 2 35788888998887655 5789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
++|-.- | ........|+.+.....+.||+||+++.
T Consensus 200 i~dssd---------p---------vgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 200 ITDSSD---------P---------VGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EEecCC---------c---------cchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 988322 1 1123455678888999999999998873
No 311
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.85 E-value=2.7 Score=41.52 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=51.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
++.+||-.|+ +|+.+.++++.+. .+.+|++++.++..+....+.+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678888875 5677777666543 345899999998887776666655443 256778888653210 02
Q ss_pred CCCcEEEEcCC
Q 009769 403 VKCDKVLLDAP 413 (526)
Q Consensus 403 ~~fD~Vl~D~P 413 (526)
..+|.|+.++.
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 35899987653
No 312
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.81 E-value=2.1 Score=46.88 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=65.1
Q ss_pred CeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEeeC-CcchhhccccccccceeeccchHHHHHH------hcC
Q 009769 258 SFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVVA------VVD 330 (526)
Q Consensus 258 ~~~lRvn~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~iQd~~s~l~~~------~l~ 330 (526)
.+.-..++.. ..++++.|.+.++..-..+.++ ++.. ..-++..+-.-..|+-.++..+..+-.. .++
T Consensus 88 ~li~~l~p~~---~~~l~~~l~~~~it~ia~e~vp---r~sraq~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG 161 (509)
T PRK09424 88 TLVSFIWPAQ---NPELLEKLAARGVTVLAMDAVP---RISRAQSLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAG 161 (509)
T ss_pred EEEEEeCccc---CHHHHHHHHHcCCEEEEeeccc---ccccCCCcccccchhhhhHHHHHHHHHHHhcccCCCceeccC
Confidence 3334455432 2578888888887654333222 2211 1112222222234554444433322211 123
Q ss_pred CCCCCEEEEeCCchhH-HHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC
Q 009769 331 PQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~-~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~ 384 (526)
..++++|+=+|||+=| .++..|..++ ..|+++|.++++++.+++ +|..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 4679999999999866 4556666654 489999999999987654 5654
No 313
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.65 E-value=1.9 Score=44.43 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEE
Q 009769 330 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
...+|++||=.|||+ |..++++|+.++ ..+|+++|.++++++.++ .+|....+.....|..+.... .+.||.|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~-~g~~D~v 239 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAE-KGYFDVS 239 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhcc-CCCCCEE
Confidence 445789999887643 334455666543 347999999999987764 467653222111222222211 2358987
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
+ | |+|.. ..+..+.++|++||+++..-.
T Consensus 240 i-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 F-E--VSGHP-------------------------SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred E-E--CCCCH-------------------------HHHHHHHHHhhcCCEEEEEcc
Confidence 6 4 44311 136778889999999986543
No 314
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.60 E-value=1.4 Score=46.39 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=40.2
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
....+.+|++||..|||+ |..+.++|+.++ ..+|+++|.++++++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 445677899999999988 778888888754 35799999999998887664
No 315
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=2 Score=42.21 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=79.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHH------HHHHH---HHHcCCCccEEEEcCccccccc--c
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLR------ILNET---AKLHQVNSVIRTIHADLRTFAD--N 400 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~------~a~~n---~~~~g~~~~v~~~~~D~~~~~~--~ 400 (526)
...+||-+|=|-=.++..++...+ ..+.|++..++..-.+ .++.| ++++|.. .+...|++.+.. .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~---I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT---ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc---eEecccceeEEeccc
Confidence 456899888888788888888765 4566777666544422 23444 4556654 234456655432 1
Q ss_pred -CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCc-CCCEEEEE
Q 009769 401 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK-PGGVLVYS 462 (526)
Q Consensus 401 -~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~Lk-pGG~lvys 462 (526)
..+.||.||.+-|.+|.|.. ...+ ..-+....++-+.+|+.|..+|+ ..|.++..
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred ccccccceEEEcCCCCCCCcc-cccc------hHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 14689999999999999984 2222 12233455667789999999999 88887764
No 316
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.34 E-value=1.6 Score=44.36 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=61.6
Q ss_pred cCCCCCCEEEEeCCc-hhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCc
Q 009769 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCD 406 (526)
Q Consensus 329 l~~~~g~~VLDl~aG-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~~~~~fD 406 (526)
..++++++||..++| .|..++++|+.++ .+|++++.++.+.+.+++ .|++..+.....+... ........+|
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 346788899998765 3677778887753 579999999988776643 5654311111111111 0011235689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.|+ | |+|.+ ..+..+.+.|+++|+++..
T Consensus 235 ~vi-d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 235 VIF-D--FVGTQ-------------------------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEE-E--CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 775 3 33211 2377889999999998854
No 317
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=5 Score=39.51 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=77.1
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHccC---CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~f 405 (526)
.....+...+|+|+|+-.||..+...+.. ..+.+.+|+|...++...+.+.+-...-.+.-+++|........++.-
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~ 153 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGG 153 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCC
Confidence 33445789999999999999888776543 257899999999988665554443222125556777654433333333
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~ 467 (526)
.++++ -+-|..|-+ ++.+.. .+|...-..+.||-.++.-+--..
T Consensus 154 ~Rl~~-flGStlGN~----------tp~e~~-------~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 154 RRLFV-FLGSTLGNL----------TPGECA-------VFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred eEEEE-EecccccCC----------ChHHHH-------HHHHHHHhcCCCcceEEEeccccC
Confidence 34443 234555553 333333 358888889999999887664333
No 318
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.73 E-value=4.4 Score=40.21 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=54.0
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 404 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--------~~~~ 404 (526)
+.+||-.|+ +|+.+.+++..+. .+.+|++++.++..++.+.......+....+.++.+|+.+.... .-+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 446777664 4566666665443 34689999999888877776666655544578888898764321 0145
Q ss_pred CcEEEEcCCCCC
Q 009769 405 CDKVLLDAPCSG 416 (526)
Q Consensus 405 fD~Vl~D~Pcsg 416 (526)
.|.|+..+....
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799888765543
No 319
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.68 E-value=1.9 Score=44.57 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=37.3
Q ss_pred cCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC
Q 009769 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~ 384 (526)
..+++|++||=.|||+ |..++++|+.++ .+|+++|.++.+++.++ .+|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCc
Confidence 4567899999999865 556666777653 47999999999887764 35654
No 320
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.66 E-value=1.6 Score=45.31 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC-cccccc-ccCCC
Q 009769 328 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-DNSTV 403 (526)
Q Consensus 328 ~l~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~-D~~~~~-~~~~~ 403 (526)
...+++|++||=.|+ |.|..++++|+.++ .+|++++.++++.+.+++ .+|.+..+..... |..+.. ...+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 345788999998887 46677788888753 579999999888766542 3576532221111 221111 11123
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
.+|.|+ | |.|. ..+..+++.|++||+++.
T Consensus 228 gvD~v~-d--~vG~--------------------------~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 228 GIDIYF-D--NVGG--------------------------DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHHhccCCEEEE
Confidence 588876 4 4331 136778889999999884
No 321
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.59 E-value=1.7 Score=45.04 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcC---ChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCc
Q 009769 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDI---NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (526)
Q Consensus 331 ~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~---s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD 406 (526)
.++|++||-.|+|+ |..+.++|+.++ .+|++++. ++.+++.+ +.+|... +.....|..+ . .....||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~-~-~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAE-V-KLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhh-h-hhcCCCC
Confidence 46789999998765 335566666643 47999987 67776654 4566542 2111112111 1 1124689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.|+ | |+|.. ..+..+.+.|++||+++..
T Consensus 241 ~vi-d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LII-E--ATGVP-------------------------PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEE-E--CcCCH-------------------------HHHHHHHHHccCCcEEEEE
Confidence 876 3 43311 1367888999999998753
No 322
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.26 E-value=3.5 Score=40.36 Aligned_cols=80 Identities=18% Similarity=0.086 Sum_probs=55.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.| |+|+.+.++++.+. .+.+|+.++.+...++.+...+...+. ++.++.+|+.+.... ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 367888888 56788888887664 245899999999888777766665443 366788888764211 01
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
..+|.|+..+..+
T Consensus 88 ~~id~vi~~ag~~ 100 (259)
T PRK08213 88 GHVDILVNNAGAT 100 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689998876553
No 323
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.10 E-value=1.5 Score=45.29 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCCCCCEEEEeCCchhHH-HHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEE
Q 009769 330 DPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~-t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
.+++|++||=.|||+=|. ++.+++.+.+..+|+++|.++.+++.+++ .+.. ..+ .+ +.. ...+|.|
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~-~~---~~~--~~g~d~v 226 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI-DD---IPE--DLAVDHA 226 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh-hh---hhh--ccCCcEE
Confidence 357899999999865443 34555543334689999999999888754 3321 111 11 111 1248887
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+ | |+|... . ...+..++++|++||++++.-
T Consensus 227 i-D--~~G~~~---~-------------------~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-E--CVGGRG---S-------------------QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred E-E--CCCCCc---c-------------------HHHHHHHHHhCcCCcEEEEEe
Confidence 6 4 444110 0 023778899999999988543
No 324
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.02 E-value=6.3 Score=38.17 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.| |+|+.+.++++.+. ...+|+.++.++..++.+...+........+.++..|+.+.... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678777 46788887777653 23589999999998887766655432223477888888764311 124
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
..|.|+.++-.+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689998876543
No 325
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.93 E-value=2.8 Score=43.19 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=60.5
Q ss_pred hcCCCCCCEEEEeCCchhH-HHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCC
Q 009769 328 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~-~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~f 405 (526)
....++|++||=.|+|+=| .+.++|+.++ ...|++++.++.+++.++ .+|....+.....+....... ....+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCCC
Confidence 3456788999998765433 4456666643 335899999999887653 456542111111111111111 12458
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|.+++| |+|.. ..+..+.++|++||+++..
T Consensus 230 d~~v~d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 230 DQLILE--TAGVP-------------------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CeEEEE--CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 866667 54421 2377788999999998854
No 326
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=0.97 Score=41.54 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCEEEEeCCchhHHH-HHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCc--cEEEEcCcccccc-ccCCCCCcEE
Q 009769 333 PGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS--VIRTIHADLRTFA-DNSTVKCDKV 408 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t-~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~--~v~~~~~D~~~~~-~~~~~~fD~V 408 (526)
.|.+||++|.|--+.+ +.+|.. .+...|.-.|-++..++-.++....+.... .+.++..+.-.-. .....+||.|
T Consensus 29 rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 3678999999865554 444443 456789999999999988887766653332 1111111111101 1124589998
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
++ +.|. -+.+....+.+....+|+|.|..++
T Consensus 108 la-ADCl---------------------FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 108 LA-ADCL---------------------FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred Ee-ccch---------------------hHHHHHHHHHHHHHHHhCcccceeE
Confidence 75 4552 2233345678889999999998554
No 327
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.71 E-value=0.36 Score=49.44 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccc----cccccCCCCCcEEEEc
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVKCDKVLLD 411 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~----~~~~~~~~~fD~Vl~D 411 (526)
+|||+|+|||.-..++-..++.-..++-++.|+..-+......+..+.. ...+...|+. .++. ...|++|++-
T Consensus 116 siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~lp~--ad~ytl~i~~ 192 (484)
T COG5459 116 SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSLPA--ADLYTLAIVL 192 (484)
T ss_pred hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCCCc--cceeehhhhh
Confidence 5999999999877666555544445666777765433333322222221 1222233332 2221 1345555431
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
. ++.-...+..+ | ..+++.+.++.|||.||++
T Consensus 193 ----~--------eLl~d~~ek~i------~-~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 193 ----D--------ELLPDGNEKPI------Q-VNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred ----h--------hhccccCcchH------H-HHHHHHHHhccCCCeEEEE
Confidence 0 00000111112 2 2589999999999999984
No 328
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.65 E-value=1.9 Score=42.37 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=76.0
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCcEE
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 408 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---~~~fD~V 408 (526)
++|.. |...+|+=-.+.++. ..+-++.++|++++=...++.|+. +.. ++.+..+|...-.... .++=-.|
T Consensus 88 N~~~~-l~~YpGSP~lA~~ll---R~qDRl~l~ELHp~D~~~L~~~f~--~d~-~vrv~~~DG~~~l~a~LPP~erRglV 160 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQLL---REQDRLVLTELHPSDAPLLRNNFA--GDR-RVRVLRGDGFLALKAHLPPKERRGLV 160 (279)
T ss_pred CCCCC-cccCCCCHHHHHHHc---chhceeeeeecCccHHHHHHHHhC--CCc-ceEEEecCcHHHHhhhCCCCCcceEE
Confidence 44444 777777766655554 357899999999999999999988 333 4889999987643221 2345689
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCC
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 483 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 483 (526)
++|||+- ...+-..+. +-|+++++-.. +|+. |-+.|...-+.++.|++...
T Consensus 161 LIDPPfE---------------~~~eY~rvv----~~l~~~~kRf~-~g~y----aiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 161 LIDPPFE---------------LKDEYQRVV----EALAEAYKRFA-TGTY----AIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred EeCCCcc---------------cccHHHHHH----HHHHHHHHhhc-CceE----EEEEeecchHHHHHHHHHHh
Confidence 9999992 112222221 12444444444 4443 23556666667788877653
No 329
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.55 E-value=0.64 Score=49.80 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCcE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDK 407 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~------~~~~fD~ 407 (526)
+..+|=+|-|.|+....+...+ +..++++++++|.+++.+.++.....-. +..+...|..++... ....||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4578888888899887765544 4689999999999999999987654432 234455666554321 2468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHH
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 477 (526)
+++|...+.++-+.-.|. ..+-..+|..+...|.|-|.++..-..-...-+.++...
T Consensus 374 l~~dvds~d~~g~~~pp~-------------~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~ 430 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPP-------------AFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMN 430 (482)
T ss_pred EEEECCCCCcccCcCCch-------------HHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHh
Confidence 999976643222222221 112335788999999999988765444444444444433
No 330
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.42 E-value=2 Score=43.61 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=62.3
Q ss_pred HhcCCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC
Q 009769 327 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV 403 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-~~~~~ 403 (526)
....+++|++||=.|+ +.|..++++|+.++ .+|++++.++++.+.+++ +|.+..+.....|..... .....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCC
Confidence 3456788999988774 55667777887753 579999999988776643 576532221112221111 11124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.+|.|+ | |.|. ..+..+++.|+++|+++..
T Consensus 211 gvd~vl-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-D--NVGG--------------------------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHhhccCCEEEEE
Confidence 588776 4 3321 1267788889999998743
No 331
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.42 E-value=2 Score=43.75 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=61.7
Q ss_pred HhcCCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC-ccccccc-cCC
Q 009769 327 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD-NST 402 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~-D~~~~~~-~~~ 402 (526)
....+++|++||=.|+ |.|..++++|+.++ .+|++++.++++.+.++ .+|.+..+..... +...... ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASP 205 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCC
Confidence 3456788999998874 45667777777643 58999999988877664 4676532221111 1111111 112
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
..+|.|+ | |.|. ..+..+++.|++||+++.
T Consensus 206 ~gvdvv~-d--~~G~--------------------------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 206 DGYDCYF-D--NVGG--------------------------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CCeEEEE-E--CCCH--------------------------HHHHHHHHHhCcCcEEEE
Confidence 4588876 4 4331 125778889999999983
No 332
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.39 E-value=4.8 Score=39.10 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=53.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++...+.+...++..+. ++.++.+|+.+.... ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457776655 6788888887654 345899999999888877776666553 367788888754311 123
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
.+|.|+..+..
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 68999886544
No 333
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.37 E-value=4.9 Score=40.03 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=52.4
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCCCc
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKCD 406 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--------~~~~fD 406 (526)
..+|=.|+ |+.+.++++.+..+.+|+.+|.++..++.+.+.++..+. .+.++..|+.+.... ..+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666665 589999998886667899999998887776666655443 366778887664210 124689
Q ss_pred EEEEcCCC
Q 009769 407 KVLLDAPC 414 (526)
Q Consensus 407 ~Vl~D~Pc 414 (526)
.++.++-.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99887643
No 334
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.25 E-value=0.69 Score=45.64 Aligned_cols=71 Identities=24% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 331 ~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
+.+|....|+||.|||.|-++.++ .-.|+++|.-+-+- ++-. .+.|+.+..|.+.+.+ .....|-.++
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~-----sL~d---tg~v~h~r~DGfk~~P-~r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQ-----SLMD---TGQVTHLREDGFKFRP-TRSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhh-----hhhc---ccceeeeeccCccccc-CCCCCceEEe
Confidence 457899999999999999998875 67999999865322 2222 3357888999999876 3467899998
Q ss_pred cCC
Q 009769 411 DAP 413 (526)
Q Consensus 411 D~P 413 (526)
|.-
T Consensus 277 DmV 279 (358)
T COG2933 277 DMV 279 (358)
T ss_pred ehh
Confidence 854
No 335
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.75 E-value=3 Score=43.51 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=60.4
Q ss_pred hcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009769 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 405 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~~~~~f 405 (526)
...+++|++||=.|+|+ |..+.++|+.++ ..+|+++|.++.+++.++ .+|.+..+.....|..+ +.......+
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALAR----ELGATATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHH----HcCCceEeCCCchhHHHHHHHHhCCCC
Confidence 34577899999988653 334455565532 337999999999988764 46764322211112111 111112368
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|.|+ | |+|.+ ..+..+++.|++||+++..
T Consensus 261 d~vi-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 261 DYAF-E--MAGSV-------------------------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred CEEE-E--CCCCh-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 9886 3 44321 2367788899999998853
No 336
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.48 E-value=6.4 Score=38.74 Aligned_cols=124 Identities=13% Similarity=-0.034 Sum_probs=67.4
Q ss_pred CCCEEEEeCCchh-HHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAPG-GKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~G-~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.|.++|-.|+++| |.+..+|+.+- .+.+|+.++.+....+.+++..+..+ . +.++..|+.+.... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--A-PIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--c-ceEEecCcCCHHHHHHHHHHHHHH
Confidence 3679999999884 88887776653 34688888888655444444444433 1 34567787654211 1
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHH----HHHHHHHHHHHccCcCCCEEEEE
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK----ILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~----~~q~~lL~~a~~~LkpGG~lvys 462 (526)
.+..|.++.++-........ ...+..+.++..... .-...+.+.+...++.+|.++..
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~---~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLH---GRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred cCCCCEEEEcCccCCccccc---CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 25689998876432110000 001122233332221 11223455566666778887653
No 337
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.43 E-value=4.7 Score=40.26 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCCCC
Q 009769 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STVKC 405 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~-~~~~f 405 (526)
....+|++||=.|+|+ |..+.++|+.+ +...|+++|.++.+++.+++ +|.+..+.. .+... .... ....+
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQNGRGV 188 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHhCCCCC
Confidence 4456899999987753 22334555553 23459999999998876544 566431111 11101 1100 12358
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|.|+ | |+|.. ..+..+.+.|+++|+++..
T Consensus 189 d~vi-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVAL-E--FSGAT-------------------------AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEE-E--CCCCh-------------------------HHHHHHHHHhcCCCEEEEe
Confidence 9876 3 43311 2367788999999998843
No 338
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.24 E-value=9.4 Score=37.33 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=53.2
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|++ |+.+.++++.+. .+.+|+.++.++..++.+.+.+...+....+.++..|+.+.... ..+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6688888875 667777776553 34689999999988887777666532233477788888664211 124
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
.+|.++.++-
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899887654
No 339
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.23 E-value=4.6 Score=38.77 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=50.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||-.|+ +|+.+.+++..+. .+.+|++++.++..+..+.+.+... ..+.++.+|+.+.... ..
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888885 7788887776553 2458999999988777666555432 2377788887654211 01
Q ss_pred CCCcEEEEcC
Q 009769 403 VKCDKVLLDA 412 (526)
Q Consensus 403 ~~fD~Vl~D~ 412 (526)
..+|.|+..+
T Consensus 81 ~~~d~vi~~a 90 (237)
T PRK07326 81 GGLDVLIANA 90 (237)
T ss_pred CCCCEEEECC
Confidence 3689888654
No 340
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.11 E-value=5 Score=38.85 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.| |+|+.+.+++..+. .+.+|+.++.++.....+...+...+. .+.++..|..+.... ..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG--TAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356788776 55777877776553 346899999998777666655544332 356777888764321 11
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
..+|.|+..+..
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999987654
No 341
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.98 E-value=6 Score=38.57 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=53.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.++|-.|++ |+.+.++++.+. .+.+|+.++.++..++.+.+.++..+. .+.++..|+.+.... ..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGG--KVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36788888875 556666665543 346899999999888887777666552 366778887654211 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+..|.++.++..
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999887644
No 342
>PRK09242 tropinone reductase; Provisional
Probab=87.81 E-value=12 Score=36.60 Aligned_cols=124 Identities=15% Similarity=0.026 Sum_probs=70.0
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~~~ 403 (526)
|.++|-.|++ |+.+..++..+. .+.+|+.++.+++.++.+...+....-...+.++..|+.+... ...+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6688888774 566666665543 3468999999998888777776654212347778888865321 1124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHHccCc--CCCEEEEEeCC
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLVK--PGGVLVYSTCS 465 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~----~q~~lL~~a~~~Lk--pGG~lvystcs 465 (526)
.+|.|+..+.....+ + .+..+.++...... -...+++.+...++ ++|.+++.++.
T Consensus 88 ~id~li~~ag~~~~~-----~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~ 148 (257)
T PRK09242 88 GLHILVNNAGGNIRK-----A--AIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSV 148 (257)
T ss_pred CCCEEEECCCCCCCC-----C--hhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECcc
Confidence 689988755432111 1 11223333332211 22234555555553 45777776553
No 343
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=1 Score=40.67 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
..++.-.+..+.+|+|+|-|..-++.++. +.-.-+++|+++..+...+-.+-+.|+.....+..-|...+.
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 34455566679999999999999988875 345789999999999999999999999877778887776554
No 344
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.68 E-value=7.6 Score=40.07 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=55.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+.++..|.. +.++..|+.+.... ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE--VLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3567887776 4666666665443 3568999999999998888888776653 66677787653211 12
Q ss_pred CCCcEEEEcCCCCC
Q 009769 403 VKCDKVLLDAPCSG 416 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg 416 (526)
+.+|.++.++-...
T Consensus 83 g~iD~lVnnAG~~~ 96 (330)
T PRK06139 83 GRIDVWVNNVGVGA 96 (330)
T ss_pred CCCCEEEECCCcCC
Confidence 56899988765443
No 345
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.67 E-value=6.7 Score=38.06 Aligned_cols=81 Identities=17% Similarity=0.060 Sum_probs=53.3
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-----------c
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-----------D 399 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-----------~ 399 (526)
.++.+||=.|+ +|+.+..+++.+.. +.+|++++.++..+..+.+.++..+.. ++.++..|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHHHH
Confidence 35778888885 67777777765532 459999999998887777766665543 3556666664211 0
Q ss_pred cCCCCCcEEEEcCCC
Q 009769 400 NSTVKCDKVLLDAPC 414 (526)
Q Consensus 400 ~~~~~fD~Vl~D~Pc 414 (526)
...+..|.|+..+..
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 112468999887644
No 346
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.66 E-value=8.6 Score=37.85 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=66.7
Q ss_pred CCCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.|.++|-.|+++ +|.+.++++.+. .+.+|+.++.+....+.+++..+... ...+.++..|+.+.... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 367899999884 888888877654 34578877665322233333333332 12366778888664211 1
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.+++|.++.++-....+... .+ .+..+.++.... ......+.+.+...++++|.+|..+
T Consensus 85 ~g~ld~lv~nag~~~~~~~~-~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLR-GE--FLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCCccEEEECcccCCCCcCC-Cc--cccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 25789888765432111000 00 111222222221 1112234556667777788877543
No 347
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.62 E-value=9.3 Score=36.82 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=51.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.++|-.|+ +|+.+..++..+. .+.+|++++.++.....+.+.++..+ ..+.++.+|+.+.... ..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3457888875 6788887777653 34589999999887776666555544 2367788898764311 01
Q ss_pred CCCcEEEEcC
Q 009769 403 VKCDKVLLDA 412 (526)
Q Consensus 403 ~~fD~Vl~D~ 412 (526)
+..|.|+..+
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 3579888754
No 348
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=87.59 E-value=1.3 Score=37.70 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC-CC-hhhhHHHHHHHHHh
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-ID-PEENEERVEAFLLR 481 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs-~~-~~Ene~vv~~~l~~ 481 (526)
+||+|+-|||+............ ...-..++.-+++.+.++| +|.+.|.+-+ +. ..+.-..+.+++-.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~--------~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK--------KKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhc--------ccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 59999999999543322111100 0013345667899999988 8999877655 55 45555666777765
Q ss_pred CCCC
Q 009769 482 HPEF 485 (526)
Q Consensus 482 ~~~~ 485 (526)
+..+
T Consensus 72 ~~~i 75 (106)
T PF07669_consen 72 NTNI 75 (106)
T ss_pred CCCe
Confidence 5433
No 349
>PRK06949 short chain dehydrogenase; Provisional
Probab=87.58 E-value=6.9 Score=38.06 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||-.| |+|+.+.+++..+.. ..+|++++.+++.++.+...+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467888887 567788777776643 34899999999988877776655443 367778887653210 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+.+|.|+..+..
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468998886654
No 350
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.54 E-value=4.9 Score=41.97 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=36.6
Q ss_pred hcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC
Q 009769 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~ 384 (526)
...+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++.+++.++ .+|..
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~----~~Ga~ 232 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAK----KLGAT 232 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCC
Confidence 34578899999988754 334556666543 337999999999988764 35764
No 351
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.51 E-value=13 Score=36.41 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=53.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.++|-.|++ |+.+.++++.+. .+.+|+.++.++..++.+.+.+....-...+.++..|+.+.... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 36788888865 556666666553 35689999999988887766665432222466778888764321 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+..|.++.++-.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998876644
No 352
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.46 E-value=11 Score=37.16 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=50.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STV 403 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--------~~~ 403 (526)
.|.++|-.|++ |+.+.++++.+- .+.+|+.++.++..++.+.+.++... ...+.++..|+.+.... ..+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 36678877766 456666665543 34689999999988887776665432 12367788888764211 014
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
..|.++.++-
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6888887653
No 353
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.42 E-value=4.1 Score=41.72 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=59.5
Q ss_pred CCCCC--CEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCC
Q 009769 330 DPQPG--QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVK 404 (526)
Q Consensus 330 ~~~~g--~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~-~~~~~~ 404 (526)
.+++| ++||=.|+ |.|..++++|+.++ ..+|++++.++++.+.+++ .+|.+..+.....|..+.. ...+..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~---~lGa~~vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKS---ELGFDAAINYKTDNVAERLRELCPEG 224 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH---hcCCcEEEECCCCCHHHHHHHHCCCC
Confidence 45555 89988876 56667778888753 2379999999888766554 2576542221112221111 111246
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+|.|+ | |.|.. .+..+++.|+++|+++.
T Consensus 225 vd~vi-d--~~g~~--------------------------~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 225 VDVYF-D--NVGGE--------------------------ISDTVISQMNENSHIIL 252 (345)
T ss_pred ceEEE-E--CCCcH--------------------------HHHHHHHHhccCCEEEE
Confidence 89886 4 33211 14667888999999884
No 354
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.32 E-value=13 Score=36.14 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=53.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.++|=.|++ |+.+.+++..+. .+.+|+.++.++..+..+...++..+. .+.++..|+.+.... ..
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 36678888754 677777776654 346899999998888777666665543 356677887654211 12
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
+.+|.|+..+...
T Consensus 85 ~~id~vi~~ag~~ 97 (254)
T PRK08085 85 GPIDVLINNAGIQ 97 (254)
T ss_pred CCCCEEEECCCcC
Confidence 4689999876543
No 355
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.20 E-value=5.1 Score=41.36 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=64.4
Q ss_pred cCCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCC
Q 009769 329 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVK 404 (526)
Q Consensus 329 l~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--~~~ 404 (526)
...++|++||=.|+ |.|..++++|+.++ .+++++--+++..+ .++.+|.+..+.....|+.+-.... ...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45778999999885 44567788888754 26666666665544 4567787654444444443322211 236
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
+|.|+ |+--. ..+..++..|+++|+++..-..
T Consensus 212 vDvv~-D~vG~----------------------------~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 212 VDVVL-DTVGG----------------------------DTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ceEEE-ECCCH----------------------------HHHHHHHHHhccCCEEEEEecC
Confidence 99885 43321 3467788999999999975543
No 356
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.18 E-value=4.5 Score=38.33 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=77.2
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC---CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKC 405 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-----~~~~f 405 (526)
.+.|++.|+.-||.++..|..|-. ..+|+++|++-..+..+... ++ .|.++.++.++..-. ....+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p-~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VP-DILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CC-CeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 458999999999999998887643 35899999987665443222 44 389999998775321 12223
Q ss_pred cEE--EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCC--h-----h----hhH
Q 009769 406 DKV--LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID--P-----E----ENE 472 (526)
Q Consensus 406 D~V--l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~--~-----~----Ene 472 (526)
-.| ++|.--|. ..-+.+ |+....+|.-|-++|.-..-+. + . .-.
T Consensus 144 ~kIfvilDsdHs~---------------~hvLAe--------l~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~ 200 (237)
T COG3510 144 PKIFVILDSDHSM---------------EHVLAE--------LKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPY 200 (237)
T ss_pred CcEEEEecCCchH---------------HHHHHH--------HHHhhhHhhcCceEEEecccccCCCCcccchhcCCChH
Confidence 344 44433321 111222 4445566677877775433221 1 0 113
Q ss_pred HHHHHHHHhCC-CCeEec
Q 009769 473 ERVEAFLLRHP-EFSIDP 489 (526)
Q Consensus 473 ~vv~~~l~~~~-~~~~~~ 489 (526)
+.|+.+++.|| +|++..
T Consensus 201 ~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 201 EAVEAYLREFPQDYEIDT 218 (237)
T ss_pred HHHHHHHHhCCcccccch
Confidence 46789999998 777743
No 357
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.08 E-value=10 Score=36.93 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=54.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|+ +|+.+..+++.+. .+.+|+.++.++..++.+...++..|. .+.++..|+.+.... ..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3678998885 6778887776553 346899999999888777777666553 366778888763211 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
...|.|+..+..
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 468998886654
No 358
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.06 E-value=11 Score=38.92 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=54.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+.++..|.. +.++..|+.+.... .-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~--~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE--ALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEecCCCHHHHHHHHHHHHHHC
Confidence 3567887775 4667776766543 3468999999999988888777776643 67788888664321 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+.+|.++.++..
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 468999887654
No 359
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=87.06 E-value=1.9 Score=42.58 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=38.8
Q ss_pred eCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCcEEEEcCCC
Q 009769 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDAPC 414 (526)
Q Consensus 340 l~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---~~~fD~Vl~D~Pc 414 (526)
+...||.-.+.. +++..+-+++.+|+++.-.+.+++|+... .++.+.+.|........ ..+=-+|++|||+
T Consensus 62 l~~YPGSP~ia~-~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAA-RLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHH-HHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHH-HhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 445666655433 33456789999999999999999887762 35889999998743221 2334589999998
No 360
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.01 E-value=1.9 Score=40.72 Aligned_cols=120 Identities=21% Similarity=0.340 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHH------------HHHcCCCccEEEEcCccccccccCCCCCcEEE
Q 009769 343 APGGKTLYMASCLS-GQGLVYAIDINKGRLRILNET------------AKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (526)
Q Consensus 343 G~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n------------~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl 409 (526)
|.|..++.+|..+. .+.+|+++|+++++++.+++- +++..-.++..+ ..|..... ...|.++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai----~~adv~~ 81 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI----KDADVVF 81 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH----HH-SEEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh----hccceEE
Confidence 45555544444333 246999999999999876532 121110112322 22332212 2478888
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCC
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 483 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 483 (526)
+-.|.--.+ ...+|..+ + ...++.....+++ |.+|..-+++.+.-.++.+...+++..
T Consensus 82 I~VpTP~~~--~~~~Dls~------v-------~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 82 ICVPTPSDE--DGSPDLSY------V-------ESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp E----EBET--TTSBETHH------H-------HHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EecCCCccc--cCCccHHH------H-------HHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhc
Confidence 776652111 22334322 2 2336667777787 555555677888888888888888654
No 361
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=86.98 E-value=12 Score=36.70 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=53.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHc-cCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~-~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.++|-.|++. +.+.+++..+ ..+.+|+.++.++..++.+...++..+. ++.++..|+.+.... ..
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 466788888774 4555555433 2356899999999888887777776553 367788888754311 12
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
+.+|.++..+...
T Consensus 86 ~~id~li~~ag~~ 98 (265)
T PRK07097 86 GVIDILVNNAGII 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 4689998876554
No 362
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.93 E-value=9.3 Score=38.16 Aligned_cols=124 Identities=12% Similarity=-0.014 Sum_probs=65.9
Q ss_pred CCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 334 GQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 334 g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
|..||=.|+++ +|.+..+|+.+. .+.+|+.++.+....+.+++..+..+.. .++..|+.+.... ..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD---YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc---eEEEecCCCHHHHHHHHHHHHHHc
Confidence 67899999874 677777776553 3458888888854333444444444422 3567788764311 12
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHH----HHHHHHHHHHHccCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK----ILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~----~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+++|.++.++-........ .| .+..+.++..... .-...+.+.++..++.+|.+++.+
T Consensus 82 g~iDilVnnAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALE-GS--FLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred CCCCEEEECCccCcccccc-cc--cccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 5789988776432100000 00 1112223322211 112234556666667778877654
No 363
>PRK05599 hypothetical protein; Provisional
Probab=86.77 E-value=12 Score=36.50 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=52.6
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCCc
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKCD 406 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~~fD 406 (526)
+||-.|++ +|.+..+++.+..+.+|+.++.++..++.+.+.++..+-. .+.++..|+.+.... ..+..|
T Consensus 2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 46666664 5677777776665678999999999998887777765533 366778887764311 125789
Q ss_pred EEEEcCC
Q 009769 407 KVLLDAP 413 (526)
Q Consensus 407 ~Vl~D~P 413 (526)
.++.++-
T Consensus 80 ~lv~nag 86 (246)
T PRK05599 80 LAVVAFG 86 (246)
T ss_pred EEEEecC
Confidence 9887653
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.67 E-value=4 Score=41.88 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=61.9
Q ss_pred hcCCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC-ccccc-cccCCC
Q 009769 328 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF-ADNSTV 403 (526)
Q Consensus 328 ~l~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~-D~~~~-~~~~~~ 403 (526)
...+++|++||=.|+ |.|..++++|+.++ .+|++++.++++.+.+++. +|.+..+..... |..+. ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 456789999998886 45667777887753 5799999988887766532 566532221111 22111 111124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
.+|.|+ | |+|. ..+..+++.|+++|+++.
T Consensus 221 gvd~v~-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 221 GIDIYF-D--NVGG--------------------------KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHHhccCcEEEE
Confidence 688876 4 3331 126778899999999884
No 365
>PRK12937 short chain dehydrogenase; Provisional
Probab=86.64 E-value=15 Score=35.25 Aligned_cols=123 Identities=17% Similarity=0.077 Sum_probs=68.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCC-hhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s-~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.+.+||=.|+ +|+.+.+++..+.. +.+++.+..+ +...+.+.+.+...+. .+.++..|+.+.... .
T Consensus 4 ~~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 4 SNKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG--RAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3567777776 47788777776543 3466665543 4445555555555443 377788888664211 1
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.+..|.|+..+...+.+.+.. .+.++.... ..-...++..+.+.++++|.+++.++.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIAD-------FDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred cCCCCEEEECCCCCCCCChhh-------CCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence 246899988764432222111 122222221 112234566677777788999988764
No 366
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.54 E-value=5 Score=41.76 Aligned_cols=102 Identities=25% Similarity=0.311 Sum_probs=60.0
Q ss_pred hcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009769 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 405 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~~~~~f 405 (526)
...+++|++||-.|+|. |..++++|+.++ ...++++|.++.+.+.++ .+|....+.....+... +.......+
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~----~~g~~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAK----ELGATHVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCcEEecCCCcCHHHHHHHHhCCCC
Confidence 34567889999887644 445566777653 347999999998877654 35654211111111111 111113468
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|.|+- |+|.+ ..+..+.+.++++|+++..
T Consensus 256 d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 256 DYALD---TTGVP-------------------------AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred cEEEE---CCCCc-------------------------HHHHHHHHHhccCCEEEEe
Confidence 98863 44321 1367788889999988843
No 367
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=86.45 E-value=6.3 Score=40.16 Aligned_cols=38 Identities=13% Similarity=-0.155 Sum_probs=29.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHH
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 374 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a 374 (526)
.-+||=.|||.|+.+..+|.. +-.+-+.|.|--|+-..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICS 188 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHH
Confidence 457999999999999999986 34566778877776443
No 368
>PRK07831 short chain dehydrogenase; Provisional
Probab=86.38 E-value=9.6 Score=37.35 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=51.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~-~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.+.++|=.|++.++.+..+++.+. .+.+|+.+|.++..++...+.++. ++.. ++.++..|+.+.... .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG-RVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCc-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367888888642245555554432 246799999999888777766655 3432 367788888764211 1
Q ss_pred CCCCcEEEEcCCC
Q 009769 402 TVKCDKVLLDAPC 414 (526)
Q Consensus 402 ~~~fD~Vl~D~Pc 414 (526)
.+..|.++.++-.
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 2468998887654
No 369
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.26 E-value=6.1 Score=40.40 Aligned_cols=103 Identities=24% Similarity=0.280 Sum_probs=58.9
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCC
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-~~~~ 404 (526)
..+.+++|++||=.|+|+ |..+.++|+.++ ...|++++.++.+++.++ .+|.+..+.....+...+... ....
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHHhCCCC
Confidence 445677899999987643 223345566543 334999999999877654 456643221111111111111 1236
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+|.|+ | |+|.. ..+..+++.|+++|+++..
T Consensus 232 ~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAI-E--CSGNT-------------------------AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEE-E--CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 89886 3 33311 2356778889999998843
No 370
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=86.24 E-value=10 Score=34.03 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=54.2
Q ss_pred EEEEeCCchhHHHHHHHHHcc--CCcEEEEEcCC--hhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLS--GQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~--~~~~v~avD~s--~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~~ 402 (526)
+||=.|++ |+.+..+++.+- +...|+.+..+ ...++.+...++..+ . .+.++..|+.+... ...
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A-KITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S-EEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c-cccccccccccccccccccccccccc
Confidence 45556655 556666655443 34588888888 777777777777666 3 48889999766421 113
Q ss_pred CCCcEEEEcCCCCCCcccc
Q 009769 403 VKCDKVLLDAPCSGLGVLS 421 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~ 421 (526)
..+|.++.++.....+.+.
T Consensus 79 ~~ld~li~~ag~~~~~~~~ 97 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLD 97 (167)
T ss_dssp SSESEEEEECSCTTSBSGG
T ss_pred ccccccccccccccccccc
Confidence 5799999877665444433
No 371
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.23 E-value=17 Score=35.34 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=53.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||-.|+ +|+.+..++..+. .+.+|+.++.+++.++.+...++..+. .+.++.+|+.+.... ..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678888885 5666776666542 356899999998888777776766553 367788887653211 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+++|.|+..+-.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 467999876544
No 372
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.22 E-value=5.2 Score=40.69 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=49.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCcEEE
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVL 409 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--~~~~fD~Vl 409 (526)
.|.+||-.| |+|+.+.+++..+- .+.+|+++..++.............+....++++.+|+.+.... .-..+|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 366888887 56888988887654 34578777777655443322222223323478888998775321 123579888
Q ss_pred EcCC
Q 009769 410 LDAP 413 (526)
Q Consensus 410 ~D~P 413 (526)
..+.
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7654
No 373
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.21 E-value=0.56 Score=44.84 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+|+|+.|||+.. +.-.. ....+ .......+........+.++.++|||||.+++.
T Consensus 1 VdliitDPPY~~-~~~~~-~~~~~-~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 1 VDLIITDPPYNI-GKDYN-NYFDY-GDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp EEEEEE---TSS-SCS------CS-CHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCCCCC-CCCcc-hhhhc-cCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 489999999942 21100 00000 111235566666788999999999999998753
No 374
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.11 E-value=5.4 Score=38.67 Aligned_cols=99 Identities=24% Similarity=0.269 Sum_probs=59.7
Q ss_pred CCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCcEE
Q 009769 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCDKV 408 (526)
Q Consensus 331 ~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~~~~~fD~V 408 (526)
..+|++||..|+|+ |..+..+++..+ .+|++++.++.+.+.++. .|....+.....+... ........+|.|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 37899999999986 666677777643 789999999888776643 3433211111111110 000113569998
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
+. |.+.. ..+..+.+.|+++|+++...
T Consensus 206 i~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 ID---AVGGP-------------------------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EE---CCCCH-------------------------HHHHHHHHhcccCCEEEEEc
Confidence 74 32210 13666788899999988543
No 375
>PRK08324 short chain dehydrogenase; Validated
Probab=86.11 E-value=7.8 Score=44.23 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=70.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|++ |+.+.++++.+. .+.+|+.+|.++..++.+...+... ..+.++..|+.+.... ..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57788877764 566666665543 3468999999998877665544332 2467788887654211 12
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcC---CCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP---GGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~Lkp---GG~lvyst 463 (526)
+.+|.|+..+-.+..+.+...+...|. ..+.....-...+++.+...+++ ||.+|+.+
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWR---RSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 468999887654433332222222221 11111222233456667776665 67777543
No 376
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.11 E-value=0.49 Score=47.31 Aligned_cols=98 Identities=20% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEcC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 412 (526)
.|..++|.|||.|--+.. .+...++++|++..-+..++ +-|.+ .+..+|+...+.. ...||.++.=+
T Consensus 45 ~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak----~~~~~---~~~~ad~l~~p~~-~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAK----RSGGD---NVCRADALKLPFR-EESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCcC-----CCcceeeecchhhhhccccc----cCCCc---eeehhhhhcCCCC-CCccccchhhh
Confidence 488999999999865421 24568999999877766543 22322 4678899887754 46788876422
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCE-EEEE
Q 009769 413 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-LVYS 462 (526)
Q Consensus 413 Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~-lvys 462 (526)
--+ |.-+... -...+++..+.|+|||. ++|+
T Consensus 112 vih------------hlsT~~R-------R~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 112 VIH------------HLSTRER-------RERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhh------------hhhhHHH-------HHHHHHHHHHHhcCCCceEEEE
Confidence 222 2111111 23568999999999997 5554
No 377
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.01 E-value=12 Score=36.01 Aligned_cols=79 Identities=20% Similarity=0.068 Sum_probs=52.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.|+ +|+.+.+++..+. .+.+|++++.++..+..+.+.++..+. .+.++..|+.+.... ..
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3667886664 6788888877654 345899999998888777666655442 377888888764311 01
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
.++|.|+..+-.
T Consensus 83 ~~id~vi~~ag~ 94 (250)
T PRK12939 83 GGLDGLVNNAGI 94 (250)
T ss_pred CCCCEEEECCCC
Confidence 468998876543
No 378
>PRK12744 short chain dehydrogenase; Provisional
Probab=85.95 E-value=11 Score=36.68 Aligned_cols=122 Identities=16% Similarity=0.021 Sum_probs=65.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCC----hhHHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN----KGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 400 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s----~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-------- 400 (526)
+.+||=.|+ +|+.+.++++.+.. +.+++.++.+ ....+.+.+.++..+. .+.++..|+.+....
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA--KAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC--cEEEEecCcCCHHHHHHHHHHHH
Confidence 567887774 66788888876653 3465666543 2334444344444443 367788888764221
Q ss_pred -CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 401 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 401 -~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
..+..|.++.++--...+. .|..+.++..+. ..-...+++.+...++++|.+++...|
T Consensus 85 ~~~~~id~li~~ag~~~~~~-------~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss 147 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKP-------IVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTS 147 (257)
T ss_pred HhhCCCCEEEECCcccCCCC-------cccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecc
Confidence 1246898887653321111 122222333221 112223567777777778887765443
No 379
>PRK12746 short chain dehydrogenase; Provisional
Probab=85.57 E-value=12 Score=36.43 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCCc-EEEEE-cCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC----------
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------- 401 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~~-~v~av-D~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---------- 401 (526)
+.+||=.|+ +|+.+.++++.+...| +|+.+ ..+...+..+...+...+ ..+.++..|+.+.....
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 467887775 6888888887664334 45443 455555544433333322 23677888887643210
Q ss_pred -----CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 -----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 -----~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
....|.|+..+-....+.+...+...|. ..+..-......+++.+...++..|.+|+.+
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~---~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~s 146 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFD---EIMAVNIKAPFFLIQQTLPLLRAEGRVINIS 146 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 1358998876543322222111111111 1111222233345566666666677777653
No 380
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.52 E-value=14 Score=35.73 Aligned_cols=78 Identities=10% Similarity=0.000 Sum_probs=48.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCC-cEEEE-EcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~-~~v~a-vD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
+.+||=.|++ |+.+.++++.+... .+|+. .+.+....+.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 4 ~~~vlItGa~-g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGSS-RGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5678877764 77888877766533 36655 46677666666555555443 367778887664311 01
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+..|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 358999887654
No 381
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=85.43 E-value=4.6 Score=40.02 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=59.6
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 401 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-- 401 (526)
+-+...++||+.||=-.| .||.++.+.+++. .+.++++.--+.+..+.+++| |+...|.....|..+-....
T Consensus 138 l~e~y~vkpGhtVlvhaA-AGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVHAA-AGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHhcCCCCCCEEEEEec-cccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccC
Confidence 344567899999886543 3555544444332 246788887777777776554 66554555555654432221
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEE
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lv 460 (526)
+..+|.+. |+- |. .-+...+..||++|.+|
T Consensus 213 gKGVd~vy-Dsv----G~------------------------dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 213 GKGVDAVY-DSV----GK------------------------DTFAKSLAALKPMGKMV 242 (336)
T ss_pred CCCceeee-ccc----cc------------------------hhhHHHHHHhccCceEE
Confidence 34567653 322 11 12566778888888888
No 382
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.41 E-value=15 Score=35.55 Aligned_cols=77 Identities=12% Similarity=-0.029 Sum_probs=52.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|+ +|+.+..++..+. .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 568888886 4667776666543 346899999999888877777766553 377888888653210 124
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
++|.|+..+-
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 6899987653
No 383
>PLN02740 Alcohol dehydrogenase-like
Probab=85.35 E-value=6.7 Score=41.14 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=58.5
Q ss_pred hcCCCCCCEEEEeCCchhH-HHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC--cccc-ccccCCC
Q 009769 328 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA--DLRT-FADNSTV 403 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~G~-~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~--D~~~-~~~~~~~ 403 (526)
...+++|++||=.|+|+=| .++++|+.++ ..+|+++|.++.+++.++ .+|.+..+..... |..+ +......
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGK----EMGITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHH----HcCCcEEEecccccchHHHHHHHHhCC
Confidence 3567889999999865322 3345555532 337999999999988774 4676532221110 1111 1111122
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCC-CEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVY 461 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpG-G~lvy 461 (526)
.+|+|+ | |+|.. ..+..++..+++| |+++.
T Consensus 268 g~dvvi-d--~~G~~-------------------------~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 268 GVDYSF-E--CAGNV-------------------------EVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCEEE-E--CCCCh-------------------------HHHHHHHHhhhcCCCEEEE
Confidence 589875 3 54421 2367788888886 88764
No 384
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=85.29 E-value=11 Score=36.65 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=51.0
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|+ +|+.+.+++..+. .+.+|+.+|.+...++.+...++...-...+.++..|+.+.... ...
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357888885 4677777776553 34689999999887776655544322112367788888753211 114
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
..|.|+..+...
T Consensus 81 ~id~vv~~ag~~ 92 (259)
T PRK12384 81 RVDLLVYNAGIA 92 (259)
T ss_pred CCCEEEECCCcC
Confidence 689988876443
No 385
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.15 E-value=8.1 Score=39.63 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=60.6
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCc----ccccccc-
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADN- 400 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D----~~~~~~~- 400 (526)
....+++|++||-.|+|. |..++++|+.++ ...|++++.+++....+++ +|.+..+.....+ ...+...
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455678899999877654 556667777643 2238999988888766643 3654322111111 1111111
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
....||.|+- |+|.. ..+..+++.|+++|+++..
T Consensus 231 ~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIE---CTGAE-------------------------SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 1245898863 44321 1367788899999998753
No 386
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.14 E-value=15 Score=36.51 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=53.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|++ |+.+.++++.+. .+.+|+.++.++..++.+.+.++..+. .+.++..|+.+.... ..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 36678877775 667777776553 345899999998888776666655443 366778888764311 12
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
+..|.++.++...
T Consensus 82 g~id~li~nAg~~ 94 (275)
T PRK05876 82 GHVDVVFSNAGIV 94 (275)
T ss_pred CCCCEEEECCCcC
Confidence 4689998876543
No 387
>PTZ00357 methyltransferase; Provisional
Probab=85.06 E-value=3 Score=46.61 Aligned_cols=75 Identities=21% Similarity=0.147 Sum_probs=49.8
Q ss_pred EEEEeCCchhHHH---HHHHHHccCCcEEEEEcCChhHHHHHHHHH---HHcC-----CCccEEEEcCccccccccC---
Q 009769 336 SIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETA---KLHQ-----VNSVIRTIHADLRTFADNS--- 401 (526)
Q Consensus 336 ~VLDl~aG~G~~t---~~la~~~~~~~~v~avD~s~~~l~~a~~n~---~~~g-----~~~~v~~~~~D~~~~~~~~--- 401 (526)
.|+=+|||-|-.- +.+++..+-..+|+|+|.++..+..+..+. .... ..++|+++..|++.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999854 445555555679999999976543333332 2231 1346999999999985321
Q ss_pred -------CCCCcEEEE
Q 009769 402 -------TVKCDKVLL 410 (526)
Q Consensus 402 -------~~~fD~Vl~ 410 (526)
-+++|+|+.
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 136888874
No 388
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=84.87 E-value=1.9 Score=41.65 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=74.1
Q ss_pred hHHHHHHhcCCC--------CCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC
Q 009769 321 SAGLVVAVVDPQ--------PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (526)
Q Consensus 321 ~s~l~~~~l~~~--------~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~ 392 (526)
+|.+++..+... +.-++||+||=+....+... +--.|++||+++.- + .+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~----~~fdvt~IDLns~~-------------~---~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS----GWFDVTRIDLNSQH-------------P---GILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccccc----CceeeEEeecCCCC-------------C---Cceee
Confidence 566666655321 12589999998655443322 23469999998621 2 24678
Q ss_pred ccccccc--cCCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCE-----EEEEe--
Q 009769 393 DLRTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-----LVYST-- 463 (526)
Q Consensus 393 D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~-----lvyst-- 463 (526)
|+.+.+- ...++||+|.+- =++.--|+. .+. -++|..+.++|+|+|. |+..+
T Consensus 91 DFm~rplp~~~~e~FdvIs~S------LVLNfVP~p------~~R-------G~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLS------LVLNFVPDP------KQR-------GEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred ccccCCCCCCcccceeEEEEE------EEEeeCCCH------HHH-------HHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 8877642 235789988642 122222221 111 2479999999999999 77653
Q ss_pred -CC-CChhhhHHHHHHHHHhCCCCeEec
Q 009769 464 -CS-IDPEENEERVEAFLLRHPEFSIDP 489 (526)
Q Consensus 464 -cs-~~~~Ene~vv~~~l~~~~~~~~~~ 489 (526)
|- -..--+++.....+... +|..+.
T Consensus 152 ~Cv~NSRy~~~~~l~~im~~L-Gf~~~~ 178 (219)
T PF11968_consen 152 PCVTNSRYMTEERLREIMESL-GFTRVK 178 (219)
T ss_pred hHhhcccccCHHHHHHHHHhC-CcEEEE
Confidence 42 12223345555555543 555543
No 389
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.76 E-value=18 Score=35.94 Aligned_cols=124 Identities=14% Similarity=0.010 Sum_probs=67.4
Q ss_pred CCCEEEEeCCc-hhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009769 333 PGQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (526)
Q Consensus 333 ~g~~VLDl~aG-~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~ 401 (526)
.|.++|=.|++ ++|.+..+++.+. .+.+|+.+..+....+.+++..+..+. +..+..|+.+... ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~---~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA---FVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC---ceEEecCCCCHHHHHHHHHHHHHh
Confidence 36789999987 4788888887663 345777776654334444444444442 3456788765321 11
Q ss_pred CCCCcEEEEcCCCCCCcc-ccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 TVKCDKVLLDAPCSGLGV-LSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~-l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.+..|.++.++-....+. .....+ .+.++.... ..-...+++.+...++.+|.++..+
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~----~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVD----TSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred cCCCcEEEECCcccCccccccCccc----CCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 246899988765432110 001011 122222222 1122345566677777788877554
No 390
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.72 E-value=15 Score=36.15 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=63.6
Q ss_pred CCCEEEEeCCchh-HHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009769 333 PGQSIVDCCAAPG-GKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (526)
Q Consensus 333 ~g~~VLDl~aG~G-~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~ 401 (526)
.|..+|=.|++.| |.+.++++.+. .+.+|+.++.++...+.+++..+..+. ..++..|+.+... ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~---~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC---NFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC---ceEEEccCCCHHHHHHHHHHHHHH
Confidence 3678898898775 66666665543 345788888774333334444333332 2245678766421 11
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHH----HHHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK----ILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~----~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.+.+|.++.++......... .+ .+..+.++..... .-...+++.+...++.+|.+|..+
T Consensus 84 ~g~iDilVnnag~~~~~~~~-~~--~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 84 WGSFDFLLHGMAFADKNELK-GR--YVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred cCCccEEEEccccCCccccc-Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 25689888755432110000 00 1122233333221 112234556666677788877543
No 391
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=84.26 E-value=4.8 Score=42.78 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=36.1
Q ss_pred cCCCCCCEEEEeC-Cc-hhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHH
Q 009769 329 VDPQPGQSIVDCC-AA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 329 l~~~~g~~VLDl~-aG-~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n 377 (526)
..+++|++||=+| +| .|..++++|+.++ +..+|+++|.++.+++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3567889988886 33 5556677777653 234899999999999988764
No 392
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.23 E-value=18 Score=36.26 Aligned_cols=125 Identities=11% Similarity=0.020 Sum_probs=66.5
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCCh-hHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~-~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.+.+||-.|+ +|+.+.+++..+. .+.+|+.++.++ ..++.+...++..+. .+.++..|+.+.... .
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV--KCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3668888886 4566766666543 346788888875 334444444444443 367788888653211 0
Q ss_pred CCCCcEEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 TVKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~-G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
...+|.|+.++..+.. +.+...+.-.|. ..+..-......+++.+...++++|.+|+.+
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~---~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLD---KTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHH---HHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1368999876543211 111111110111 1111112223345666667777788888754
No 393
>PRK08643 acetoin reductase; Validated
Probab=84.22 E-value=24 Score=34.22 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=51.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.++|=.| |+|+.+.++++.+. .+.+|+.++.++..++.+...+...+. .+.++..|+.+.... ..+
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34666665 55667777776553 345899999999888887777766543 366788888764310 124
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
..|.|+.++.
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 6899988654
No 394
>PRK08589 short chain dehydrogenase; Validated
Probab=84.21 E-value=19 Score=35.55 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=49.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.++|=.|++ |+.+.+++..+. .+.+|+.++.+ ..++.+.+.++..+. .+.++..|+.+.... ..
T Consensus 5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG--KAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 35678877765 456666665443 35689999998 666665555555443 367778887654211 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+..|.++.++..
T Consensus 81 g~id~li~~Ag~ 92 (272)
T PRK08589 81 GRVDVLFNNAGV 92 (272)
T ss_pred CCcCEEEECCCC
Confidence 468999887754
No 395
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.21 E-value=9.1 Score=37.62 Aligned_cols=122 Identities=15% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCCEEEEeCCc-hhHHHHHHHHHcc-CCcEEEEEcCCh--hHHHHHHHHHHHcCCCccEEEEcCccccccc---------
Q 009769 333 PGQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINK--GRLRILNETAKLHQVNSVIRTIHADLRTFAD--------- 399 (526)
Q Consensus 333 ~g~~VLDl~aG-~G~~t~~la~~~~-~~~~v~avD~s~--~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~--------- 399 (526)
.+.++|-.|+| ++|.+.++++.+. .+.+|+.++.+. +.++.+. +..+. .+.++..|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~---~~~~~--~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIA---KRLPE--PAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHH---HhcCC--CCcEEeCCCCCHHHHHHHHHHHH
Confidence 36789999986 6888888887654 345888888764 3333332 22222 25567788766421
Q ss_pred cCCCCCcEEEEcCCCCCCccc-cCCchhhccCCHHHHHH----HHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 400 NSTVKCDKVLLDAPCSGLGVL-SKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 400 ~~~~~fD~Vl~D~Pcsg~G~l-~~~p~~~~~~~~~~l~~----l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
...+.+|.++.++-......+ ....+ .+.+++.+ -..-...+.+.+...++++|.++..+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~----~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLD----APWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCccc----CCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 112578998876543211000 00011 11222221 11112235566677777888887643
No 396
>PRK06500 short chain dehydrogenase; Provisional
Probab=83.97 E-value=21 Score=34.40 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~~~ 403 (526)
+.+||=.|++ |+.+.++++.+. .+.+|+.++.++..+..+.+ ..+. .+.++..|..+... ...+
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGE--SALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCC--ceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5577776664 677777776543 34589999998776654433 3332 35667777765321 1124
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
.+|.|+..+..+
T Consensus 80 ~id~vi~~ag~~ 91 (249)
T PRK06500 80 RLDAVFINAGVA 91 (249)
T ss_pred CCCEEEECCCCC
Confidence 689998876543
No 397
>PRK09186 flagellin modification protein A; Provisional
Probab=83.94 E-value=17 Score=35.21 Aligned_cols=79 Identities=22% Similarity=0.158 Sum_probs=51.0
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|++ |+.+.+++..+. .+.+|+.++.++..++.+.+.+....-...+.++.+|+.+.... ...
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5678877774 678887777664 34689999999888877666654321122356667888764211 013
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
..|.|+.++.
T Consensus 83 ~id~vi~~A~ 92 (256)
T PRK09186 83 KIDGAVNCAY 92 (256)
T ss_pred CccEEEECCc
Confidence 5899988763
No 398
>PRK07677 short chain dehydrogenase; Provisional
Probab=83.93 E-value=18 Score=35.10 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
|.++|-.|++ |+.+.++++.+. .+.+|+.++.++..++.+.+.+...+ ..+.++..|+.+.... ..+
T Consensus 1 ~k~~lItG~s-~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGS-SGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3567777764 556666665443 34689999999888877776665544 2477888887653211 114
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.|+.++..
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68998877643
No 399
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.67 E-value=1.9 Score=41.58 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~ 398 (526)
.+.-.++.|+++|.||||.|..+... +..++..+|++...+.-++...+... .+..+.++|+..+.
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 33445789999999999999988864 45689999999999988888777443 34777888887653
No 400
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.67 E-value=17 Score=36.10 Aligned_cols=78 Identities=13% Similarity=-0.069 Sum_probs=48.1
Q ss_pred CCCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.|..+|-.|++. +|.+..+|..+. .+.+|+.++.+....+.+++..+..|. ...+..|+.+.... .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999886 367777666553 345888888776544444444444442 23567888764311 1
Q ss_pred CCCCcEEEEcCC
Q 009769 402 TVKCDKVLLDAP 413 (526)
Q Consensus 402 ~~~fD~Vl~D~P 413 (526)
.+..|.++.++-
T Consensus 83 ~g~iD~lVnnAG 94 (271)
T PRK06505 83 WGKLDFVVHAIG 94 (271)
T ss_pred hCCCCEEEECCc
Confidence 257898887653
No 401
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.53 E-value=6.1 Score=42.57 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCC-EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 332 QPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 332 ~~g~-~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
.+-. ++|-+|||.--.+.++-. .+--.|+.+|+|+-.++.+...-.+ .-. -..+...|+....- ..+.||+||.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~~-~~~-~~~~~~~d~~~l~f-edESFdiVId 120 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYK--NGFEDITNIDSSSVVVAAMQVRNAK-ERP-EMQMVEMDMDQLVF-EDESFDIVID 120 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHh--cCCCCceeccccHHHHHHHHhcccc-CCc-ceEEEEecchhccC-CCcceeEEEe
Confidence 4455 899999999877777655 3456899999999999887654432 111 25677777766542 3467888873
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
=+- ...++.. .+..|+. .. -...+.+..+++++||+.+-.||
T Consensus 121 kGt--lDal~~d-e~a~~~~--~~-------v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 121 KGT--LDALFED-EDALLNT--AH-------VSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCc--cccccCC-chhhhhh--HH-------hhHHHhhHHHHhccCCEEEEEEe
Confidence 110 0001111 1112321 11 12458899999999999998888
No 402
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.50 E-value=27 Score=33.71 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=51.7
Q ss_pred CEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVK 404 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~~~~ 404 (526)
.+||=.| |+|+.+.+++..+. .+.+|++++.++...+.+.......+. .+.++.+|+.+... .....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3566666 55777877776553 345899999998888777766655443 37778888876431 11245
Q ss_pred CcEEEEcCCCC
Q 009769 405 CDKVLLDAPCS 415 (526)
Q Consensus 405 fD~Vl~D~Pcs 415 (526)
.|.|+..+-.+
T Consensus 79 ~d~vi~~a~~~ 89 (255)
T TIGR01963 79 LDILVNNAGIQ 89 (255)
T ss_pred CCEEEECCCCC
Confidence 79998876543
No 403
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.30 E-value=18 Score=34.51 Aligned_cols=78 Identities=18% Similarity=0.080 Sum_probs=51.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++...+.....++..+.. +.++..|+.+.... .-.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE--ARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCc--eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467887776 6888888876653 2347999999988877666666555533 67777888654210 013
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.|+..+..
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 57988876544
No 404
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.24 E-value=24 Score=34.12 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=49.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHc-cCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc----------cCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NST 402 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~-~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~----------~~~ 402 (526)
|.++|=.|++.| .+..++..+ ..+.+|+.++.+++.++.+.+.++..+.. +..+..|..+... ..+
T Consensus 5 ~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 5 SSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN--VYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC--eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 668888887765 455555433 34578999999999988887777665543 4556667654321 112
Q ss_pred CCCcEEEEcC
Q 009769 403 VKCDKVLLDA 412 (526)
Q Consensus 403 ~~fD~Vl~D~ 412 (526)
..+|.++.++
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 2789988876
No 405
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.22 E-value=16 Score=35.64 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=48.1
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.| |+|+.+.++++.+. .+.+|+.+|.+...++.+.+.. + ..+.++..|+.+.... ..+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 55788776 55777887777653 3458999999988776554432 2 2366778887654211 124
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.++..+..
T Consensus 80 ~id~li~~ag~ 90 (257)
T PRK07067 80 GIDILFNNAAL 90 (257)
T ss_pred CCCEEEECCCc
Confidence 68988876544
No 406
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=83.10 E-value=24 Score=34.14 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=51.8
Q ss_pred EEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 405 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~~f 405 (526)
++|=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+.+...+. .+.++.+|+.+.... .....
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555664 5777777766552 346899999998887777666665553 367788887653211 12357
Q ss_pred cEEEEcCCCCCCc
Q 009769 406 DKVLLDAPCSGLG 418 (526)
Q Consensus 406 D~Vl~D~Pcsg~G 418 (526)
|.|+.++.....+
T Consensus 79 d~vi~~ag~~~~~ 91 (254)
T TIGR02415 79 DVMVNNAGVAPIT 91 (254)
T ss_pred CEEEECCCcCCCC
Confidence 9999877654433
No 407
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.00 E-value=14 Score=36.11 Aligned_cols=123 Identities=14% Similarity=0.001 Sum_probs=65.1
Q ss_pred CCCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.|.++|-.|++. +|.+..+++.+. .+.+|+.++.+....+. ++...- ..+.++..|+.+.... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLVD-EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhcc-CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999885 677777777663 35688888877432222 222211 2366788888764211 1
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~----~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.+.+|.++.++-......+. .| -+..+.++...... -...+...+...++.+|.+++.+
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~-~~--~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 81 VGKIDGIVHAIAYAKKEELG-GN--VTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred hCCCCEEEEccccccccccc-CC--cccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 25689988876432110000 00 11122333332211 12234555666677788877544
No 408
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=82.79 E-value=6.5 Score=40.15 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEeCCc-hhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc-ccc-CCCCC
Q 009769 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN-STVKC 405 (526)
Q Consensus 329 l~~~~g~~VLDl~aG-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~-~~~-~~~~f 405 (526)
...++|++||..|+| .|..++++|+.++ ...+++++.++.+.+.+++ +|....+.....+..+. ... ....+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 356788999997764 3556677777653 2478899888877766543 45432121111121111 111 12468
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
|.|+ | |.+.+ ..+..+++.|+++|+++.
T Consensus 238 d~vl-d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 238 DCVI-E--AVGFE-------------------------ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred cEEE-E--ccCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 9876 3 32211 237778889999998873
No 409
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.36 E-value=26 Score=34.16 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=50.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCcE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCDK 407 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-----~~~~fD~ 407 (526)
+.+||=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.+.+....-. ++.++..|+.+.... ..+..|.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGV-DVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 567888885 4667776665443 2458999999998888777666553222 366777887653211 1246898
Q ss_pred EEEcCC
Q 009769 408 VLLDAP 413 (526)
Q Consensus 408 Vl~D~P 413 (526)
++.++-
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 887653
No 410
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.22 E-value=12 Score=38.19 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=56.7
Q ss_pred CCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEE
Q 009769 330 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~V 408 (526)
...+|++||..++|. |..+.++|+.++ ..+|++++.++.+.+.++ .+|.+..+.....+...... ....+|.|
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~----~~g~~~vi~~~~~~~~~~~~-~~~~vd~v 235 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVAR----AMGADETVNLARDPLAAYAA-DKGDFDVV 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HcCCCEEEcCCchhhhhhhc-cCCCccEE
Confidence 334788999887765 556667777653 237999999988877543 34553211111111111111 12358988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 409 l~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+- |.|.+ ..+..+++.|+++|+++-
T Consensus 236 ld---~~g~~-------------------------~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 236 FE---ASGAP-------------------------AALASALRVVRPGGTVVQ 260 (339)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 63 33311 125677888999999874
No 411
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.03 E-value=15 Score=37.06 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCcEEEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--~~~~fD~Vl~ 410 (526)
+.+||=.|+ +|..+.+++..+.. +.+|++++.+..............+....++++.+|+.+.... .-..+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 457777665 68899988877643 3478888877654332222221122223478889998764321 1235799987
Q ss_pred cCCC
Q 009769 411 DAPC 414 (526)
Q Consensus 411 D~Pc 414 (526)
-+..
T Consensus 83 ~A~~ 86 (322)
T PLN02662 83 TASP 86 (322)
T ss_pred eCCc
Confidence 6654
No 412
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.93 E-value=2.7 Score=37.91 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=30.2
Q ss_pred EeCCchh--HHHHHHH-HHccCCcEEEEEcCChhHHHHHHHH--HHHcCC
Q 009769 339 DCCAAPG--GKTLYMA-SCLSGQGLVYAIDINKGRLRILNET--AKLHQV 383 (526)
Q Consensus 339 Dl~aG~G--~~t~~la-~~~~~~~~v~avD~s~~~l~~a~~n--~~~~g~ 383 (526)
|+||..| ..+..++ +...+.++|+++|.++..++.++++ +.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 8999999 6666554 2445678999999999999999999 655533
No 413
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.91 E-value=20 Score=34.94 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=48.9
Q ss_pred CEEEEeCCchhHHHHHHHHHc-cCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCC
Q 009769 335 QSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 404 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~-~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~~ 404 (526)
.+||-.| |+|+.+.+++..+ ..+.+|++++.++...+.+.+.+...+. .+.++..|+.+.... ....
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG--EALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567555 5567777776543 3356999999998877776666655443 477788888764321 0135
Q ss_pred CcEEEEcC
Q 009769 405 CDKVLLDA 412 (526)
Q Consensus 405 fD~Vl~D~ 412 (526)
.|.|+..+
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 89988754
No 414
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=81.86 E-value=1.4 Score=44.71 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=55.9
Q ss_pred EEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc------ccCCCCCcEEEEc
Q 009769 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------DNSTVKCDKVLLD 411 (526)
Q Consensus 338 LDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~------~~~~~~fD~Vl~D 411 (526)
+|+|.|.-..--.+...+. ...-++.|++......+++|..+++++..+.+++....... ......||..++|
T Consensus 107 iDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7888876655444444433 47889999999999999999999999877777665332111 1113469999999
Q ss_pred CCCCC
Q 009769 412 APCSG 416 (526)
Q Consensus 412 ~Pcsg 416 (526)
||...
T Consensus 186 PPFfe 190 (419)
T KOG2912|consen 186 PPFFE 190 (419)
T ss_pred Cchhh
Confidence 99843
No 415
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.62 E-value=25 Score=35.38 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||-.|++ |+.+.++++.+. .+.+|+.++.++..++.+.+.+ +....+..+..|+.+.... ..
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788877755 566776666553 3468999999988776655443 2222345556787664211 12
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
+.+|.|+.++-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5689999876543
No 416
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.54 E-value=32 Score=32.96 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=52.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHc-cCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~-~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|+ +|+.+.+++..+ ..+.+|+.++.++..++.....++..+ .++.++..|+.+.... ..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567888885 678888777654 335689999999888776665555444 2477788888654311 113
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.|+..+..
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 68999887654
No 417
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.49 E-value=28 Score=33.80 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+ +|+.+.+++..+- .+.+|+.++.++...+.+.+.++..+. .+.++.+|+.+.... ...
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567886655 4677777666543 345899999999888777776665543 367788888764321 123
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
..|.|+..+-..
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589988766553
No 418
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.35 E-value=30 Score=33.27 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=52.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|+ +|+.+.+++..+.. +.+|+.++.+......+...++..+. .+.++.+|+.+.... ...
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567888875 46777777765543 35899999999888777766665443 377788888653211 013
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
..|.|+..+...
T Consensus 80 ~~d~vi~~ag~~ 91 (250)
T TIGR03206 80 PVDVLVNNAGWD 91 (250)
T ss_pred CCCEEEECCCCC
Confidence 579888876553
No 419
>PRK12742 oxidoreductase; Provisional
Probab=81.32 E-value=24 Score=33.68 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=58.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcC-ChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKC 405 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~-s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-----~~~~f 405 (526)
.+.+||=.|+ +|+.+.++++.+.. +.+|+.+.. ++..++.+. ...+ +.++..|..+.... ....+
T Consensus 5 ~~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~~----~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 5 TGKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QETG----ATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHhC----CeEEecCCCCHHHHHHHHHHhCCC
Confidence 3678887766 57777777766543 347777654 444444332 2333 23456676543210 12468
Q ss_pred cEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHHccCcCCCEEEEEe
Q 009769 406 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 406 D~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~----~q~~lL~~a~~~LkpGG~lvyst 463 (526)
|.++..+-....+.. +..+.++...... -...++..+...++.+|.+++.+
T Consensus 77 d~li~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 77 DILVVNAGIAVFGDA-------LELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred cEEEECCCCCCCCCc-------ccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 988876543221111 1122233222211 11234456666667778877644
No 420
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=81.17 E-value=7.7 Score=40.69 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=82.3
Q ss_pred HHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH-------HHHcCC-CccEEEEcCcccc
Q 009769 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-------AKLHQV-NSVIRTIHADLRT 396 (526)
Q Consensus 325 ~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n-------~~~~g~-~~~v~~~~~D~~~ 396 (526)
++.-+...+++...|+|+|.|......|... +...=+|+++...--+.+..+ ++.+|- .+.+..+++++..
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 4455778899999999999999998888763 345667888765554444333 344554 4557888888866
Q ss_pred cccc--CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCCh-----h
Q 009769 397 FADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP-----E 469 (526)
Q Consensus 397 ~~~~--~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~-----~ 469 (526)
.... .....++|+++--.+ .|++..+ +.+.+.-+++|-+++ |+-++.+ +
T Consensus 263 ~~~v~eI~~eatvi~vNN~~F-------dp~L~lr----------------~~eil~~ck~gtrIi-S~~~L~~r~rs~e 318 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVAF-------DPELKLR----------------SKEILQKCKDGTRII-SSKPLVPRPRSQE 318 (419)
T ss_pred HHHHHHHhhcceEEEEecccC-------CHHHHHh----------------hHHHHhhCCCcceEe-ccccccccccchh
Confidence 4321 134567787764432 2333222 346667788877776 5555444 4
Q ss_pred hhHHHHHHHHHh
Q 009769 470 ENEERVEAFLLR 481 (526)
Q Consensus 470 Ene~vv~~~l~~ 481 (526)
-+.-.+..|+..
T Consensus 319 s~~~~~~df~~i 330 (419)
T KOG3924|consen 319 STSRRVSDFVAI 330 (419)
T ss_pred HHHHHHHHHHhh
Confidence 444455666553
No 421
>PRK07102 short chain dehydrogenase; Provisional
Probab=81.13 E-value=30 Score=33.33 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=50.9
Q ss_pred EEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCcEE
Q 009769 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDKV 408 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~------~~~~fD~V 408 (526)
+|+-.| |+|+.+.+++..+- .+.+|++++.++...+.+.+.+...+-. ++.++.+|+.+.... ....+|.|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAV-AVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 577666 45777877776654 3458999999998877665555443322 478888998765321 12357999
Q ss_pred EEcCCC
Q 009769 409 LLDAPC 414 (526)
Q Consensus 409 l~D~Pc 414 (526)
+.++..
T Consensus 81 v~~ag~ 86 (243)
T PRK07102 81 LIAVGT 86 (243)
T ss_pred EECCcC
Confidence 877643
No 422
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.10 E-value=13 Score=37.81 Aligned_cols=101 Identities=22% Similarity=0.286 Sum_probs=60.3
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 403 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~-~~~ 403 (526)
....+.+|++||..++|. |..++++|+.++ .+++++..+++..+.+++ +|.+..+.....+..+ +... ...
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGE 226 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCC
Confidence 345677899999997654 556777887753 679999888887776633 4544322211112111 1111 124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
.+|.|+- |+|.+ ..+..+++.|+++|+++.
T Consensus 227 ~vd~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 227 GADVVID---ATGNP-------------------------ASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 5898863 33210 236777888899998874
No 423
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.91 E-value=36 Score=32.65 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=52.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|+ +|+.+.+++..+. .+.+|++++.++..+..+...+...+. .+.++.+|+.+.... ...
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567887765 5777777776543 346899999998877766666655443 277888888764210 013
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
.+|.|+..+...
T Consensus 83 ~~d~vi~~ag~~ 94 (251)
T PRK12826 83 RLDILVANAGIF 94 (251)
T ss_pred CCCEEEECCCCC
Confidence 689998876543
No 424
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.82 E-value=26 Score=33.74 Aligned_cols=118 Identities=19% Similarity=0.083 Sum_probs=64.6
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCCh-hHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~-~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
+.+||-.|+ +|+.+.+++..+. .+.+|++++.+. ..++.+...++..+. .+.++.+|+.+.... ..
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG--RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 568888775 4667777776553 345788887764 345555444444442 367788888764321 01
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
..+|.|+.++..+... ...++..+..+. .-...+++.+...++.+|.+|+.+
T Consensus 83 ~~~d~vi~~ag~~~~~--~~~~~~~~~vn~-------~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMES--GMDEDYAMRLNR-------DAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCC--CCCcceeeEeee-------HHHHHHHHHHHhhccCCceEEEEe
Confidence 3689988776432111 111211111111 122345677777766677777553
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.71 E-value=31 Score=33.38 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=52.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.|+ +|+.+.+++..+. .+.+|+.++.++..++.+...+...+. ++.++..|+.+.... .-
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 3567887766 5677777776553 346899999999888777666665443 367788888653211 11
Q ss_pred CCCcEEEEcCC
Q 009769 403 VKCDKVLLDAP 413 (526)
Q Consensus 403 ~~fD~Vl~D~P 413 (526)
+..|.|+..+-
T Consensus 81 g~~d~vi~~ag 91 (258)
T PRK07890 81 GRVDALVNNAF 91 (258)
T ss_pred CCccEEEECCc
Confidence 46899988663
No 426
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.71 E-value=27 Score=33.37 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=68.2
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||-.|++ |+.+.++++.+. .+.+|++++.++..+..+...+...+ .+.++.+|..+.... ..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 36789998885 777777776653 34589999999988776655444332 367788888753211 11
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHH----HHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~----l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
..+|.|+..+.-+... + .. ..+++.. .......+++.....++++|.+++.+
T Consensus 80 ~~id~ii~~ag~~~~~-----~-~~---~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 80 NAIDGLVVTVGGYVED-----T-VE---EFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCCEEEEcCCCcCCC-----c-hH---HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3578888765432111 1 00 0122211 11222344666667777788777543
No 427
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=80.69 E-value=16 Score=37.31 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=59.6
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCC
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVK 404 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~-~~~ 404 (526)
....+.+|++||-.++|. |..+.++|+.++ ...+++++.++...+.++ .+|....+.........+.... ...
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCC
Confidence 345677899999987654 556677777643 234899988887766553 3455321111111111111111 235
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
+|.|+- |+|.+ ..+..+++.|+++|+++..
T Consensus 228 ~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 228 ADLVIE---AAGSP-------------------------ATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 898863 43311 2367778889999997743
No 428
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.62 E-value=20 Score=35.17 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHH
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~ 376 (526)
....+.+|++||-.|+|. |..+..+|+.++ ..+|++++.++++++.+++
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA 140 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH
Confidence 345677899999887765 556677777654 2249999999998765543
No 429
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.60 E-value=25 Score=34.36 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC--------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------TVK 404 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~--------~~~ 404 (526)
+.+||=.|++ |+.+..++..+. .+.+|++++.++..++.+...+ .. ...+.++..|+.+..... .+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5577777665 566666665442 3468999999988887766554 22 234778888887643210 246
Q ss_pred CcEEEEcCCC
Q 009769 405 CDKVLLDAPC 414 (526)
Q Consensus 405 fD~Vl~D~Pc 414 (526)
.|.|+..+..
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999886544
No 430
>PRK08263 short chain dehydrogenase; Provisional
Probab=80.59 E-value=19 Score=35.65 Aligned_cols=76 Identities=16% Similarity=0.001 Sum_probs=48.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|+ +|+.+.+++..+. .+.+|++++.++..++.+.... .+.+.++..|+.+.... .-.
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346777774 6778888877653 3468999999988776554322 22356677887654221 014
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
.+|.|+..+-..
T Consensus 77 ~~d~vi~~ag~~ 88 (275)
T PRK08263 77 RLDIVVNNAGYG 88 (275)
T ss_pred CCCEEEECCCCc
Confidence 689988866543
No 431
>PRK06198 short chain dehydrogenase; Provisional
Probab=80.45 E-value=22 Score=34.52 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=49.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcE-EEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~-v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.+.+||-.|+ +|+.+.++++.+. .+.+ |+.++.++.........+...+ ..+.++..|+.+.... .
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567887775 5667777776553 2345 9999998877765555554433 2366777888653210 0
Q ss_pred CCCCcEEEEcCCC
Q 009769 402 TVKCDKVLLDAPC 414 (526)
Q Consensus 402 ~~~fD~Vl~D~Pc 414 (526)
.+.+|.|+..+-.
T Consensus 82 ~g~id~li~~ag~ 94 (260)
T PRK06198 82 FGRLDALVNAAGL 94 (260)
T ss_pred hCCCCEEEECCCc
Confidence 1358998876544
No 432
>PRK05650 short chain dehydrogenase; Provisional
Probab=80.42 E-value=26 Score=34.42 Aligned_cols=76 Identities=12% Similarity=-0.061 Sum_probs=50.1
Q ss_pred EEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 405 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~~f 405 (526)
+||-.|+ +|+.+.+++..+. .+.+|+.++.+...++.+...++..+. .+.++.+|+.+.... ....+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4665554 6677777776553 345899999998888877766665543 366778888664311 12468
Q ss_pred cEEEEcCCC
Q 009769 406 DKVLLDAPC 414 (526)
Q Consensus 406 D~Vl~D~Pc 414 (526)
|.|+.++..
T Consensus 79 d~lI~~ag~ 87 (270)
T PRK05650 79 DVIVNNAGV 87 (270)
T ss_pred CEEEECCCC
Confidence 999886543
No 433
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=80.38 E-value=26 Score=40.02 Aligned_cols=80 Identities=15% Similarity=0.029 Sum_probs=52.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------CC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~-~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
+.+||=.|++ |+.+.+++..+. .+.+|+++|.+...++.+.+.+.. .+.. .+..+..|+.+.... ..
T Consensus 414 gkvvLVTGas-ggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~-~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVTGGA-GGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAG-RAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCC-cEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 6678877764 677777776553 356999999998887776555443 2322 366778888764311 12
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
+.+|.|+.++-.+
T Consensus 492 g~iDilV~nAG~~ 504 (676)
T TIGR02632 492 GGVDIVVNNAGIA 504 (676)
T ss_pred CCCcEEEECCCCC
Confidence 4689988876543
No 434
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=80.37 E-value=22 Score=36.74 Aligned_cols=79 Identities=19% Similarity=0.062 Sum_probs=49.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCcEEEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--~~~~fD~Vl~ 410 (526)
+.+||=.|+ +|..+.++++.+.. +.+|++++.++.....+...... ...++++.+|+.+.... .-..+|.|+.
T Consensus 10 ~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 10 TGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 568888875 68899888886643 34899888776544433222221 12477888898764321 1235898887
Q ss_pred cCCCCC
Q 009769 411 DAPCSG 416 (526)
Q Consensus 411 D~Pcsg 416 (526)
-+..++
T Consensus 86 ~A~~~~ 91 (353)
T PLN02896 86 VAASME 91 (353)
T ss_pred CCcccc
Confidence 665543
No 435
>PRK06196 oxidoreductase; Provisional
Probab=80.03 E-value=14 Score=37.43 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=50.1
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|+ +|+.+.++++.+. .+.+|++++.++..++.+...+. . +.++.+|+.+.... ..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~-v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----G-VEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----h-CeEEEccCCCHHHHHHHHHHHHhcC
Confidence 3668888885 4778888777654 34589999999887765544332 1 56677888764311 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
...|.|+.++..
T Consensus 98 ~~iD~li~nAg~ 109 (315)
T PRK06196 98 RRIDILINNAGV 109 (315)
T ss_pred CCCCEEEECCCC
Confidence 468999987754
No 436
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.98 E-value=26 Score=34.13 Aligned_cols=75 Identities=24% Similarity=0.050 Sum_probs=48.6
Q ss_pred EEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc----------CCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------STVK 404 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~----------~~~~ 404 (526)
+||-.|++ |+.+..+++.+. ...+|+.++.++..++.+..... + ..+.++.+|+.+.... ..++
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56666655 677777766543 34589999999887776655433 2 2477888888764311 0346
Q ss_pred CcEEEEcCCCC
Q 009769 405 CDKVLLDAPCS 415 (526)
Q Consensus 405 fD~Vl~D~Pcs 415 (526)
+|.|+..+...
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89999866543
No 437
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.85 E-value=32 Score=33.42 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=52.5
Q ss_pred CCCCCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009769 330 DPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 400 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-------- 400 (526)
...++.+||-.|+. |+.+.+++..+. .+.+|++++.++..++.+.+..... ++.++..|+.+....
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAV 81 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHH
Confidence 33467899988875 777777776543 3468999999988776655443322 356778887754311
Q ss_pred -CCCCCcEEEEcCCC
Q 009769 401 -STVKCDKVLLDAPC 414 (526)
Q Consensus 401 -~~~~fD~Vl~D~Pc 414 (526)
....+|.|+..+..
T Consensus 82 ~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 82 ERFGGLDVLVNNAGI 96 (264)
T ss_pred HHhCCCCEEEECCCC
Confidence 01368999876544
No 438
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.53 E-value=31 Score=33.79 Aligned_cols=78 Identities=17% Similarity=0.067 Sum_probs=53.4
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+.++..+. .+.++..|..+.... .-
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888885 6778887776542 356999999998888777666655442 367788888764321 01
Q ss_pred CCCcEEEEcCC
Q 009769 403 VKCDKVLLDAP 413 (526)
Q Consensus 403 ~~fD~Vl~D~P 413 (526)
+.+|.|+..+-
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 46898887653
No 439
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.48 E-value=39 Score=32.68 Aligned_cols=78 Identities=21% Similarity=0.085 Sum_probs=52.4
Q ss_pred CEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCcEEEE
Q 009769 335 QSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLL 410 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---~~~~fD~Vl~ 410 (526)
.+||=.|+ +|+.+.++++.+. .+.+|++++.++.....+....+..+.. +.++.+|+.+.... .....|.|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA--LRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--ceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46777766 5677777776543 3468999999888777776666665543 67778888664321 1247899998
Q ss_pred cCCCC
Q 009769 411 DAPCS 415 (526)
Q Consensus 411 D~Pcs 415 (526)
++-.+
T Consensus 80 ~ag~~ 84 (257)
T PRK09291 80 NAGIG 84 (257)
T ss_pred CCCcC
Confidence 76543
No 440
>PRK06182 short chain dehydrogenase; Validated
Probab=79.47 E-value=17 Score=35.81 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=47.0
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+ +|+.+.++++.+. .+.+|++++.++..++.+.. .+ ++++.+|+.+.... ..+
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~~----~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----LG----VHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----CC----CeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 457786764 5778888887653 34589999999877654321 12 55677787664311 124
Q ss_pred CCcEEEEcCCCC
Q 009769 404 KCDKVLLDAPCS 415 (526)
Q Consensus 404 ~fD~Vl~D~Pcs 415 (526)
.+|.|+.++...
T Consensus 74 ~id~li~~ag~~ 85 (273)
T PRK06182 74 RIDVLVNNAGYG 85 (273)
T ss_pred CCCEEEECCCcC
Confidence 689998876543
No 441
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=79.43 E-value=12 Score=37.91 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCc
Q 009769 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (526)
Q Consensus 342 aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~ 385 (526)
.+.|..++++|+.++ .+|++++.++.+.+.+++ +|.+.
T Consensus 154 g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~ 191 (324)
T cd08291 154 SALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGAEY 191 (324)
T ss_pred cHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcE
Confidence 345556677777653 579999999988877654 67653
No 442
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.38 E-value=17 Score=37.29 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=60.2
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 403 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~-~~~ 403 (526)
.....++|++||=.|+|+ |..+.++|+.++ ...++++|.++.+.+.++ .+|.+..+.....+... .... ...
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAK----EYGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCceEecCCCCCHHHHHHHHhCCC
Confidence 344567889998887652 345566666653 447999999998876655 46764322111112111 1111 124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
.+|.|+- |+|.. ..+..+++.|+++|+++.
T Consensus 235 ~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVII---AGGGQ-------------------------DTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 6898763 43311 236778888999999884
No 443
>PRK12747 short chain dehydrogenase; Provisional
Probab=79.19 E-value=51 Score=31.86 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHccC-CcEEEEEc-CChhHHHHHHHHHHHcCCCccEEEEcCccccccc------------
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAID-INKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------------ 399 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD-~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~------------ 399 (526)
+.++|=.|++ |+.+.++++.+.. +.+|+..+ .++..++.+...+...+. .+..+..|+.+...
T Consensus 4 ~k~~lItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 4 GKVALVTGAS-RGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGG--SAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEecccCCHHHHHHHHHHHHHHh
Confidence 5678888755 5677777776543 34666654 455655555444444332 24556667654321
Q ss_pred --cC-CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEe
Q 009769 400 --NS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 400 --~~-~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.. ....|.++.++-.+..+.+...+.-.|. ..+.--..-...+++.+...++.+|.+|+.+
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~---~~~~vN~~~~~~l~~~~~~~~~~~g~iv~is 144 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFD---RMVSVNAKAPFFIIQQALSRLRDNSRIINIS 144 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHH---HHHHHhhhHHHHHHHHHHHHhhcCCeEEEEC
Confidence 00 1268999887654322222221111121 1111111222345566777777778877543
No 444
>PLN02827 Alcohol dehydrogenase-like
Probab=78.88 E-value=14 Score=38.68 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=58.3
Q ss_pred cCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc--Cccccccc-cCCCC
Q 009769 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFAD-NSTVK 404 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~--~D~~~~~~-~~~~~ 404 (526)
..+++|++||-.|+|+ |..++++|+.++ ...|+++|.++.+.+.+ +.+|.+..+.... .+...... .....
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a----~~lGa~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKA----KTFGVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCcEEEcccccchHHHHHHHHHhCCC
Confidence 4567899999987643 223345555543 34689999999887765 4467653221111 01111111 11236
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCC-CEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpG-G~lvys 462 (526)
+|.|+ | |+|.. ..+..+++++++| |+++..
T Consensus 264 ~d~vi-d--~~G~~-------------------------~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSF-E--CVGDT-------------------------GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEE-E--CCCCh-------------------------HHHHHHHHhhccCCCEEEEE
Confidence 89876 3 55421 1367788889998 998753
No 445
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.70 E-value=6 Score=41.29 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=40.9
Q ss_pred hHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHH
Q 009769 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (526)
Q Consensus 321 ~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~ 376 (526)
-+-++..+.+..+-+.|+|+|+|.|..+..++-. .+-.|+|||-|...-+.+++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHHH
Confidence 3455666666666689999999999999888754 46799999999666555544
No 446
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=78.51 E-value=30 Score=33.65 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||-.|++ |+.+.++++.+. .+.+++.++.+...++.+...++..+. .+.++..|+.+.... ..+
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6789988855 666666665443 345888999988888777666665543 366778888764311 124
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
.+|.|+..+..
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886654
No 447
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.37 E-value=5.2 Score=42.26 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=46.7
Q ss_pred cccceeec-cchHHHHHHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHH
Q 009769 311 KEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (526)
Q Consensus 311 ~~G~~~iQ-d~~s~l~~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n 377 (526)
..++.|-| .+....-..+|++.|+++||=+++| |.-.+.++. .+..+|+|||+||..+..++=.
T Consensus 12 f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~--~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 12 FRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSA-GCNALDYLL--AGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred ccceeeccccCCcHHHHHHhCCCCCCeEEEEccC-CchHHHHHh--cCCceEEEEeCCHHHHHHHHHH
Confidence 34555555 5566666778899999999999776 555555543 3468999999999988776543
No 448
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.14 E-value=30 Score=33.21 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+. |+.+.++++.+. .+.+|++++.++..++.+...+.. + ..+.++.+|+.+.... ...
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4577777654 566666665543 345899999999887776665544 2 2367888888764321 123
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
.+|.|+..+..
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 68999887654
No 449
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.10 E-value=29 Score=34.27 Aligned_cols=79 Identities=14% Similarity=-0.030 Sum_probs=46.7
Q ss_pred CCCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009769 333 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (526)
Q Consensus 333 ~g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~ 401 (526)
.|.++|=.|++. +|.+..+++.+. .+.+|+.++.+...-+.+++.....+ .+.++..|+.+... ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccC---CceEeecCCCCHHHHHHHHHHHHhh
Confidence 367899999987 477777776653 34578878876422223333222222 24567788866321 11
Q ss_pred CCCCcEEEEcCCC
Q 009769 402 TVKCDKVLLDAPC 414 (526)
Q Consensus 402 ~~~fD~Vl~D~Pc 414 (526)
.+++|.++.++-.
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 2468999887643
No 450
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.97 E-value=5.4 Score=40.71 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHhcCCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCc
Q 009769 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (526)
Q Consensus 326 ~~~l~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~ 385 (526)
....+++||++|-=.|.|.=|.+..+-.+..+.++|+++|++++..+.++ .+|..+
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaTe 240 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGATE 240 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcce
Confidence 34456889999999999987877777666678899999999999998865 557653
No 451
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.94 E-value=19 Score=37.38 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=58.5
Q ss_pred hcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCc--ccc-ccccCCC
Q 009769 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD--LRT-FADNSTV 403 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D--~~~-~~~~~~~ 403 (526)
...+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++.+++.++ .+|.+..+.....+ ... +......
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK----EFGATDFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCcEeccccccchHHHHHHHHhCC
Confidence 34567899999887642 223455566543 337999999999887764 35664322211111 111 1111124
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCC-CEEEEEe
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYST 463 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpG-G~lvyst 463 (526)
.+|.|+ | |+|.+ ..+..+++.++++ |+++...
T Consensus 254 g~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 254 GVDYSF-E--CTGNA-------------------------DLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCEEE-E--CCCCh-------------------------HHHHHHHHhcccCCCEEEEEc
Confidence 589876 3 44311 2367788888875 8887543
No 452
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.74 E-value=23 Score=34.56 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.++|-.|++ |+.+..+++.+- .+.+|+.++.+.. ..+.+..+..+. .+.++..|+.+.... ..
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGCN-TGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR--KFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC--eEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 46788888864 667777776543 3568888876542 333444444443 367788888764321 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+..|.++.++-.
T Consensus 82 g~iD~lv~~ag~ 93 (251)
T PRK12481 82 GHIDILINNAGI 93 (251)
T ss_pred CCCCEEEECCCc
Confidence 468998876543
No 453
>PRK07791 short chain dehydrogenase; Provisional
Probab=77.74 E-value=35 Score=34.15 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=48.9
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCCh---------hHHHHHHHHHHHcCCCccEEEEcCccccccc---
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK---------GRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 399 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~---------~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~--- 399 (526)
.|.++|-.|++. +.+..+++.+. .+.+|+.++.+. ..++.+.+.++..+. .+.++..|+.+...
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHH
Confidence 467888888764 56666665442 346888888765 556555555554443 35677788866321
Q ss_pred ------cCCCCCcEEEEcCCC
Q 009769 400 ------NSTVKCDKVLLDAPC 414 (526)
Q Consensus 400 ------~~~~~fD~Vl~D~Pc 414 (526)
...+..|.++.++-.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 112568998887643
No 454
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=77.14 E-value=20 Score=36.46 Aligned_cols=102 Identities=24% Similarity=0.258 Sum_probs=58.2
Q ss_pred HhcCCCCCCEEEEeCCc-hhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc-CccccccccCCCC
Q 009769 327 AVVDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVK 404 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~-~D~~~~~~~~~~~ 404 (526)
.....++|++||=.|+| .|..++++|.... ..+|++++.+++..+.++ .+|.+..+.... .+.........+.
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAK----EVGADLTINSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHH----HcCCcEEecccccccHHHHHHHhcCC
Confidence 44567789998888753 2334455555422 468999999998877764 456643111100 1111111111124
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
+|.++.+.. + + ..+..+++.|+++|+++.
T Consensus 231 ~d~vi~~~~-~--~-------------------------~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 231 AHAAVVTAV-A--K-------------------------AAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CcEEEEeCC-C--H-------------------------HHHHHHHHhccCCCEEEE
Confidence 786665422 1 1 236778889999999884
No 455
>PRK06194 hypothetical protein; Provisional
Probab=77.01 E-value=40 Score=33.38 Aligned_cols=82 Identities=15% Similarity=0.051 Sum_probs=53.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+ +|+.+.++++.+. .+.+|+.+|.+...++.+...+...+. .+.++.+|+.+.... ..+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567886664 4777877776554 345899999998877766655554443 367788898764211 023
Q ss_pred CCcEEEEcCCCCCCc
Q 009769 404 KCDKVLLDAPCSGLG 418 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G 418 (526)
..|.|+..+-.++.+
T Consensus 83 ~id~vi~~Ag~~~~~ 97 (287)
T PRK06194 83 AVHLLFNNAGVGAGG 97 (287)
T ss_pred CCCEEEECCCCCCCC
Confidence 589999877665443
No 456
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=77.00 E-value=19 Score=35.41 Aligned_cols=80 Identities=13% Similarity=-0.049 Sum_probs=46.1
Q ss_pred CCCEEEEeCCc-hhHHHHHHHHHccC-CcEEEEEcCChh--HHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009769 333 PGQSIVDCCAA-PGGKTLYMASCLSG-QGLVYAIDINKG--RLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 400 (526)
Q Consensus 333 ~g~~VLDl~aG-~G~~t~~la~~~~~-~~~v~avD~s~~--~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-------- 400 (526)
.|.++|=.|++ +++.+..+++.+.. +.+|+.++.+.+ +.+...+.+...+ . .+.++..|+.+....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-N-PSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-C-cceEeecCcCCHHHHHHHHHHHH
Confidence 36789999985 68888888876643 346766654432 2222222222222 1 245677887664211
Q ss_pred -CCCCCcEEEEcCCC
Q 009769 401 -STVKCDKVLLDAPC 414 (526)
Q Consensus 401 -~~~~fD~Vl~D~Pc 414 (526)
..+.+|.++.++-.
T Consensus 83 ~~~g~iD~lv~nag~ 97 (258)
T PRK07370 83 QKWGKLDILVHCLAF 97 (258)
T ss_pred HHcCCCCEEEEcccc
Confidence 12578998877643
No 457
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.96 E-value=33 Score=34.68 Aligned_cols=80 Identities=18% Similarity=0.035 Sum_probs=48.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCC-hhHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s-~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--------~~ 402 (526)
.|.++|=.|++ |+.+.+++..+. .+.+|+.+|.+ ...++.+.+.++..|. .+.++.+|+.+.... ..
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA--KAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 36678877766 566666665443 34688888875 3455555555554443 367788888663210 02
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
++.|.++.++-..
T Consensus 88 g~iD~li~nAG~~ 100 (306)
T PRK07792 88 GGLDIVVNNAGIT 100 (306)
T ss_pred CCCCEEEECCCCC
Confidence 4689998876543
No 458
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=76.93 E-value=17 Score=37.11 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=56.7
Q ss_pred cCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcE
Q 009769 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
+.+.+|++||=.|+|+ |..+.++|+.++ .+|++++.++++++.++ .+|.+..+.....|........ ..+|.
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~-~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLAR----KLGAHHYIDTSKEDVAEALQEL-GGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH----HcCCcEEecCCCccHHHHHHhc-CCCCE
Confidence 4667888998887532 223345555543 47999999988877664 4565421211111221111111 34888
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
|+ | |+|.+ ..+..+++.|+++|+++.
T Consensus 232 vi-~--~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 232 IL-A--TAPNA-------------------------KAISALVGGLAPRGKLLI 257 (333)
T ss_pred EE-E--CCCch-------------------------HHHHHHHHHcccCCEEEE
Confidence 87 3 33211 236778889999999884
No 459
>PRK05855 short chain dehydrogenase; Validated
Probab=76.89 E-value=32 Score=37.74 Aligned_cols=80 Identities=19% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.++|=.|+ +|+.+.+++..+. .+.+|+.++.+...++.+.+.++..|. .+.++..|+.+.... ..+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 467776666 6777777776653 345899999999888877777766664 377888898764321 124
Q ss_pred CCcEEEEcCCCCC
Q 009769 404 KCDKVLLDAPCSG 416 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg 416 (526)
.+|.++.++-...
T Consensus 392 ~id~lv~~Ag~~~ 404 (582)
T PRK05855 392 VPDIVVNNAGIGM 404 (582)
T ss_pred CCcEEEECCccCC
Confidence 6899988765543
No 460
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.85 E-value=41 Score=32.32 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=63.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEc-CChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAID-INKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD-~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
+.+||-.|+ +|+.+.+++..+. .+.+++.+. .+...+......++..+.. +.++..|+.+.... .-
T Consensus 6 ~~~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK06077 6 DKVVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGE--GIGVLADVSTREGCETLAKATIDRY 82 (252)
T ss_pred CcEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCe--eEEEEeccCCHHHHHHHHHHHHHHc
Confidence 568888874 6777887777554 234555443 4444444444444444432 55667777653211 01
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHH----HHHHHHHHHHHHHccCcCCCEEEEEeC
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYSTC 464 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~----l~~~q~~lL~~a~~~LkpGG~lvystc 464 (526)
...|.|+..+.....+.+.. .+.+.+.. -......+++.+...++++|.+++.+.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 83 GVADILVNNAGLGLFSPFLN-------VDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred CCCCEEEECCCCCCCCChhh-------CCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 46899998775533222111 11121111 111223445566666777788887654
No 461
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=76.77 E-value=1.7 Score=46.82 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred CEEEEeCCchhHHHHHHHHHccCCcEEEEEcCCh----hHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEE
Q 009769 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK----GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~----~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 410 (526)
..|+||.||.||++.+|... . |+.+-.-+ ..+... . .-|+-+ +..|--+.-...+.+||+|-.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~---~--VWVMNVVP~~~~ntL~vI---y-dRGLIG----~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD---P--VWVMNVVPVSGPNTLPVI---Y-DRGLIG----VYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeecccccHHHHHhccC---C--ceEEEecccCCCCcchhh---h-hcccch----hccchhhccCCCCcchhheeh
Confidence 47999999999999888653 2 33333322 222221 1 113322 122333322334678999976
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 411 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 411 D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|--.|..- . .-+ ...+|-+.-++|+|||.+++-
T Consensus 434 ~~lfs~~~---~---------rC~-------~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 434 DGLFSLYK---D---------RCE-------MEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhhhhhhc---c---------ccc-------HHHHHHHhHhhcCCCceEEEe
Confidence 64444211 0 011 135688899999999999863
No 462
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.66 E-value=49 Score=33.61 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=49.0
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCCh----------hHHHHHHHHHHHcCCCccEEEEcCcccccccc-
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK----------GRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~----------~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~- 400 (526)
.|.++|-.|++ +|.+.++++.+. .+.+|+.++.+. +.++.+.+.++..+. .+.++..|+.+....
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG--RGIAVQVDHLVPEQVR 83 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC--ceEEEEcCCCCHHHHH
Confidence 36788888866 457777766553 346888888863 455555555555543 356778888764311
Q ss_pred --------CCCCCcEEEEcC
Q 009769 401 --------STVKCDKVLLDA 412 (526)
Q Consensus 401 --------~~~~fD~Vl~D~ 412 (526)
..+..|.++.++
T Consensus 84 ~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 124689888876
No 463
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.60 E-value=38 Score=32.93 Aligned_cols=77 Identities=13% Similarity=-0.003 Sum_probs=47.8
Q ss_pred CCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCC------------hhHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009769 334 GQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (526)
Q Consensus 334 g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s------------~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~ 399 (526)
+.+||=.|++. |+.+.+++..+. .+.+|+.++.+ +.... +...++..+. .+.++..|+.+...
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV--RCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC--eEEEEECCCCCHHH
Confidence 56899999874 678877776653 23588988876 22222 3333444342 37788889876432
Q ss_pred c---------CCCCCcEEEEcCC
Q 009769 400 N---------STVKCDKVLLDAP 413 (526)
Q Consensus 400 ~---------~~~~fD~Vl~D~P 413 (526)
. ..+.+|.|+..+-
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCC
Confidence 1 1246898887653
No 464
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.39 E-value=65 Score=31.17 Aligned_cols=78 Identities=15% Similarity=0.024 Sum_probs=52.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.++|=.|++ |+.+.++++.+. .+.+|+.++.++..++.+...++..+. .+.++..|+.+.... ..+
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5678877665 666666665543 346899999999888887777766553 366778887664210 124
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.++.++..
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68999887654
No 465
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.18 E-value=40 Score=32.81 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=49.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|++ |+.+..+++.+. .+.+|+.++.+ ...+.+.+.....+- .+.++..|+.+.... ..
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGR--KVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46788888885 456666665553 34678888887 455555555555442 367788888764311 02
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+.+|.++..+..
T Consensus 90 g~id~li~~ag~ 101 (258)
T PRK06935 90 GKIDILVNNAGT 101 (258)
T ss_pred CCCCEEEECCCC
Confidence 468998876544
No 466
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.03 E-value=44 Score=32.61 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=48.8
Q ss_pred CCCEEEEeCCch-hHHHHHHHHHcc-CCcEEEEEcCC-----------hhHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009769 333 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDIN-----------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (526)
Q Consensus 333 ~g~~VLDl~aG~-G~~t~~la~~~~-~~~~v~avD~s-----------~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~ 399 (526)
.|.+||=.|+.. |+.+.+++..+. .+.+|+.++.+ ......+.+.++..|. .+.++..|+.+...
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence 477899999874 577776666553 23477766422 2233344555565554 36777888765321
Q ss_pred ---------cCCCCCcEEEEcCCCC
Q 009769 400 ---------NSTVKCDKVLLDAPCS 415 (526)
Q Consensus 400 ---------~~~~~fD~Vl~D~Pcs 415 (526)
...+..|.|+.++.+.
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCC
Confidence 1124579999887653
No 467
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.03 E-value=60 Score=31.84 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=52.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccC---------CC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------TV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~---------~~ 403 (526)
+.+||-.|++ |+.+.++++.+. .+.+|++++.++..++...+.+...+...++.++..|+.+..... ..
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5688888855 667777776553 345899999998877766655554432234777888886643110 13
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.|+..+-.
T Consensus 86 ~~d~li~~ag~ 96 (276)
T PRK05875 86 RLHGVVHCAGG 96 (276)
T ss_pred CCCEEEECCCc
Confidence 68999887643
No 468
>PRK06128 oxidoreductase; Provisional
Probab=76.02 E-value=59 Score=32.66 Aligned_cols=120 Identities=14% Similarity=0.009 Sum_probs=66.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCCh--hHHHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK--GRLRILNETAKLHQVNSVIRTIHADLRTFADN--------- 400 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~--~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--------- 400 (526)
.|.+||=.|+ +|+.+.+++..+. .+.+|+.+..+. ...+.+.+.++..+. .+.++.+|+.+....
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR--KAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHHHHH
Confidence 3678888885 5677777776654 234676665543 234444445555453 366788888764210
Q ss_pred CCCCCcEEEEcCCCCC-CccccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEE
Q 009769 401 STVKCDKVLLDAPCSG-LGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg-~G~l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
..+..|.++.++-... .+.+ .+ .+.++.... ..-...+++.+...++++|.+|+.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~---~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDI---AD----ITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCCh---hh----CCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1246899988764321 1111 11 122222222 222335677777888888988864
No 469
>PRK07832 short chain dehydrogenase; Provisional
Probab=75.93 E-value=56 Score=32.14 Aligned_cols=77 Identities=16% Similarity=0.025 Sum_probs=46.1
Q ss_pred EEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCCCC
Q 009769 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKC 405 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~~~~~f 405 (526)
++|=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+.+...+.. .+.++..|+.+... ......
T Consensus 2 ~vlItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 3455554 4667766665443 3468899999988877776666554432 24445677755321 112458
Q ss_pred cEEEEcCCC
Q 009769 406 DKVLLDAPC 414 (526)
Q Consensus 406 D~Vl~D~Pc 414 (526)
|.|+..+..
T Consensus 80 d~lv~~ag~ 88 (272)
T PRK07832 80 DVVMNIAGI 88 (272)
T ss_pred CEEEECCCC
Confidence 998876543
No 470
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.93 E-value=53 Score=31.46 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
++.++|-.|+ +|+.+..+++.+. .+.+|+.++.++..++.+.+.++..+. .+.++..|+.+.... ..
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT--EVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3678888876 4667777766543 345899999999888777776665543 366778887653210 11
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
..+|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (253)
T PRK08217 81 GQLNGLINNAGI 92 (253)
T ss_pred CCCCEEEECCCc
Confidence 468999876543
No 471
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.90 E-value=25 Score=35.56 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=57.8
Q ss_pred HhcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccc---cccCC
Q 009769 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF---ADNST 402 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~---~~~~~ 402 (526)
.....++|++||..|+|. |..+.++|+..+ ...|++++.++++.+.++ ..|... ++..+-... .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~---~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAK----KLGATE---TVDPSREDPEAQKEDNP 224 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HhCCeE---EecCCCCCHHHHHHhcC
Confidence 455677899999997542 445556666532 224899999988877653 345532 222221111 01123
Q ss_pred CCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 403 ~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
..+|.|+- |++.+ ..+..+++.|+++|+++.
T Consensus 225 ~~vd~v~~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 225 YGFDVVIE---ATGVP-------------------------KTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CCCcEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEEE
Confidence 46898873 43211 236677888899998874
No 472
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.89 E-value=23 Score=36.85 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=58.5
Q ss_pred hcCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcC--cccccc-ccCCC
Q 009769 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA--DLRTFA-DNSTV 403 (526)
Q Consensus 328 ~l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~--D~~~~~-~~~~~ 403 (526)
...+++|++||=.|+|+ |..+.++|+.++ ...|+++|.++.+++.++ .+|.+..+..... |..... .....
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~v~~~~~~ 255 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK----KFGATDCVNPKDHDKPIQQVLVEMTDG 255 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCEEEcccccchHHHHHHHHHhCC
Confidence 34578899999887643 223445565543 337999999999887664 4676532221111 111111 11123
Q ss_pred CCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCC-CEEEEE
Q 009769 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 462 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpG-G~lvys 462 (526)
.+|.|+ | |+|.. ..+..+.+.++++ |+++..
T Consensus 256 g~d~vi-d--~~g~~-------------------------~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 256 GVDYTF-E--CIGNV-------------------------KVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCcEEE-E--CCCCh-------------------------HHHHHHHHhhccCCCeEEEE
Confidence 689886 3 44310 1367778888887 887743
No 473
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.89 E-value=45 Score=32.02 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=51.8
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.++|=.||. |+.+.++++.+- .+.+|+.++.+...+........ .+ ..+.++.+|+.+.... ...
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5578877774 777777776543 34689999998877766655554 23 3377888888764321 014
Q ss_pred CCcEEEEcCCCCC
Q 009769 404 KCDKVLLDAPCSG 416 (526)
Q Consensus 404 ~fD~Vl~D~Pcsg 416 (526)
.+|.|+..+..+.
T Consensus 81 ~id~vi~~ag~~~ 93 (252)
T PRK06138 81 RLDVLVNNAGFGC 93 (252)
T ss_pred CCCEEEECCCCCC
Confidence 6899988665543
No 474
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=75.52 E-value=29 Score=36.06 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=53.6
Q ss_pred CCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEE
Q 009769 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (526)
Q Consensus 331 ~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl 409 (526)
.++|++||-.|+|+ |..++++|+.++ .++++++.++.+... .++.+|.+..+. ..+...+.. ....+|.|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~---~~~~~Ga~~vi~--~~~~~~~~~-~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDE---AINRLGADSFLV--STDPEKMKA-AIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhh---HHHhCCCcEEEc--CCCHHHHHh-hcCCCCEEE
Confidence 46788998887753 334456666643 578888887665432 234567643111 111111111 112488876
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
| |+|.. ..+..+++.|++||+++..
T Consensus 253 -d--~~g~~-------------------------~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 253 -D--TVSAV-------------------------HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -E--CCCCH-------------------------HHHHHHHHHhcCCcEEEEe
Confidence 4 43310 1266788899999998843
No 475
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=75.47 E-value=33 Score=35.02 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=46.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCC---cEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCcEE
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKV 408 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~---~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~--~~~~fD~V 408 (526)
|.+||-.|+ +|+.+.++++.+... .+|++++.+......+... ... ..++++.+|+.+.... .-..+|.|
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~~-~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FPA-PCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hCC-CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 567887766 588888888765432 4799998876544332222 221 2477888998775421 12358998
Q ss_pred EEcCC
Q 009769 409 LLDAP 413 (526)
Q Consensus 409 l~D~P 413 (526)
+..+.
T Consensus 79 ih~Ag 83 (324)
T TIGR03589 79 VHAAA 83 (324)
T ss_pred EECcc
Confidence 87554
No 476
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.40 E-value=30 Score=38.61 Aligned_cols=83 Identities=14% Similarity=-0.018 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCC-------CccEEEEcCcccccccc
Q 009769 329 VDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQV-------NSVIRTIHADLRTFADN 400 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~-------~~~v~~~~~D~~~~~~~ 400 (526)
++.+.|.+||-.|+ +|+.+.++++.+. .+.+|++++.+...+..+...+...++ ..++.++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34557778887776 4788888776653 346899999999888776665544221 12377888998764321
Q ss_pred --CCCCCcEEEEcC
Q 009769 401 --STVKCDKVLLDA 412 (526)
Q Consensus 401 --~~~~fD~Vl~D~ 412 (526)
.-+..|.|+..+
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 124689888753
No 477
>PRK07985 oxidoreductase; Provisional
Probab=75.06 E-value=61 Score=32.52 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=66.2
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCC--hhHHHHHHHHHHHcCCCccEEEEcCccccccc---------c
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------N 400 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s--~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~---------~ 400 (526)
.+.++|-.|++ |+.+.++++.+. .+.+|+.++.+ ...++.+.+.....+. .+.++..|+.+... .
T Consensus 48 ~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR--KAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC--eEEEEEccCCCHHHHHHHHHHHHH
Confidence 46689988864 677777776553 34578777654 3445555555555443 36677888876421 1
Q ss_pred CCCCCcEEEEcCCCCC-CccccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEE
Q 009769 401 STVKCDKVLLDAPCSG-LGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg-~G~l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
..+..|.++.++..+. .+.+ . ..+.++.... ..-...+++.+...++.+|.+|+.
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~---~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDI---A----DLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred HhCCCCEEEECCCCCcCCCCh---h----hCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 1246798887654321 1111 1 1122333222 112234566777777778888764
No 478
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.00 E-value=7.5 Score=33.01 Aligned_cols=64 Identities=23% Similarity=0.168 Sum_probs=43.3
Q ss_pred CchhHHHHHHHHHccCCc-EEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCcEEEEcCC
Q 009769 342 AAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAP 413 (526)
Q Consensus 342 aG~G~~t~~la~~~~~~~-~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---~~~~fD~Vl~D~P 413 (526)
||.|..+..+++.+...+ .++.+|.++..++.+++ .| +.++.+|..+.... .-...|.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence 566778877887776566 89999999999877653 23 45788998775321 1246888887544
No 479
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.97 E-value=5.7 Score=39.95 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=41.8
Q ss_pred CCCCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcC
Q 009769 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382 (526)
Q Consensus 330 ~~~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g 382 (526)
.-.+|+.|||..+|+|....+.-.. +-..+++|+++.-++.+.+.+...-
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhhc
Confidence 3568999999999999988776654 4578999999999999999887654
No 480
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.81 E-value=44 Score=33.04 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=47.5
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccc----------cCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NST 402 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~----------~~~ 402 (526)
+.+||-.|+ +|+.+.++++.+. .+.+|++++.++..++.+.. .+ ++++..|+.+... ...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567887776 5788888777653 34689999999887765432 22 4567778765321 112
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+..|.|+.++..
T Consensus 75 g~id~li~~Ag~ 86 (277)
T PRK05993 75 GRLDALFNNGAY 86 (277)
T ss_pred CCccEEEECCCc
Confidence 468999886543
No 481
>PRK06197 short chain dehydrogenase; Provisional
Probab=74.72 E-value=52 Score=33.05 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=52.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|+ +|+.+.++++.+. .+.+|+.++.++...+.+.+.+....-...+.++..|+.+.... ..
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 4667886665 5778888777554 34588899998887776655554322122477888888764311 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
+++|.|+.++..
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 468999987643
No 482
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.67 E-value=44 Score=33.61 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=51.9
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.+||=.|+ +|+.+.++++.+. .+.+|++++.+++.++.+.+.+...+. .+.++..|+.+.... ..+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457887776 4677777776543 346899999999888877776665543 366788888764210 124
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
..|.|+.++-
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 6899987543
No 483
>PRK08264 short chain dehydrogenase; Validated
Probab=74.60 E-value=35 Score=32.57 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCEEEEeCCchhHHHHHHHHHccCC-c-EEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCc
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLSGQ-G-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 406 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~~~-~-~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~-----~~~~fD 406 (526)
+.+||=.|+ +|+.+.+++..+... . +|+.++.++..+.. .+ ..+.++.+|+.+.... .....|
T Consensus 6 ~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~--~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 6 GKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG--PRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC--CceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 557887774 678888777765433 3 89999988765432 22 2367788888764321 123578
Q ss_pred EEEEcCC
Q 009769 407 KVLLDAP 413 (526)
Q Consensus 407 ~Vl~D~P 413 (526)
.|+..+-
T Consensus 76 ~vi~~ag 82 (238)
T PRK08264 76 ILVNNAG 82 (238)
T ss_pred EEEECCC
Confidence 8887653
No 484
>PRK05717 oxidoreductase; Validated
Probab=74.54 E-value=51 Score=31.95 Aligned_cols=77 Identities=19% Similarity=0.104 Sum_probs=49.6
Q ss_pred CCCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||-.|++ |+.+.+++..+. .+.+|+.+|.++.....+.+ ..+ +.+.++..|+.+.... ..
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG--ENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36688877765 777877777664 34689999998766554322 223 2367788888764211 12
Q ss_pred CCCcEEEEcCCCC
Q 009769 403 VKCDKVLLDAPCS 415 (526)
Q Consensus 403 ~~fD~Vl~D~Pcs 415 (526)
+.+|.|+..+...
T Consensus 83 g~id~li~~ag~~ 95 (255)
T PRK05717 83 GRLDALVCNAAIA 95 (255)
T ss_pred CCCCEEEECCCcc
Confidence 4689999877553
No 485
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=74.47 E-value=25 Score=37.16 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEc-Ccccc-cccc-CCCC
Q 009769 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRT-FADN-STVK 404 (526)
Q Consensus 329 l~~~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~-~D~~~-~~~~-~~~~ 404 (526)
..+++|++||=.|+|+ |..++++|+.++ ...|++.|.++.+++.+++ +|.. .+.... .+... +... ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHcCCCC
Confidence 4567888888876653 234455666543 3457778999888887654 5653 121111 12211 1111 1235
Q ss_pred CcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH-HHHHHHHccCcCCCEEEEE
Q 009769 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD-ELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 405 fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~-~lL~~a~~~LkpGG~lvys 462 (526)
+|.|+ | |+|.-.- -|.... .+.+. ..++.+++++++||++++.
T Consensus 255 ~Dvvi-d--~~G~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 255 VDCAV-D--CVGFEAR------GHGHDG------KKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CcEEE-E--CCCCccc------cccccc------cccchHHHHHHHHHHhhCCCEEEEe
Confidence 89876 3 4442100 000000 00011 2478899999999999853
No 486
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=74.17 E-value=18 Score=33.08 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=27.1
Q ss_pred CchhHHHHHHHHHhhccCCCCCCCcccCCcHHHHHHHHHhhcChHHHHHH
Q 009769 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236 (526)
Q Consensus 187 ~~~fVNaVL~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~P~w~~~~ 236 (526)
-.+||||+++...+.... .....+|...++|.|+|+.
T Consensus 84 ivRfVNgl~D~~Q~~~~a-------------~si~~~A~~iglP~~lVdl 120 (154)
T PF04031_consen 84 IVRFVNGLVDPSQQGKYA-------------RSIASLAKEIGLPSWLVDL 120 (154)
T ss_pred HHHHHHHhhhHhhccchh-------------hhHHHHHHHcCCCHHHHHH
Confidence 479999999997642211 1245688889999999975
No 487
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.01 E-value=27 Score=34.83 Aligned_cols=95 Identities=21% Similarity=0.277 Sum_probs=58.4
Q ss_pred CCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCc
Q 009769 330 DPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCD 406 (526)
Q Consensus 330 ~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~-~~~~~~~~fD 406 (526)
..++|++||=.|+ +.|..+.++|+.++ .+|+++..+++..+.+. .+|+.. +-....+... +... ...+|
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLK----ELGADE-VVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----hcCCcE-EEecCccHHHHHHHh-CCCce
Confidence 4677889888875 56667778887754 67999998887765553 456643 2111112111 1111 35689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEE
Q 009769 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461 (526)
Q Consensus 407 ~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvy 461 (526)
.|+ | |+|. ..+..+++.|+++|+++.
T Consensus 211 ~vl-~--~~~~--------------------------~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 211 KVL-E--LVGT--------------------------ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred EEE-E--CCCh--------------------------HHHHHHHHHhccCCEEEE
Confidence 887 2 4331 136777888999998874
No 488
>PRK10083 putative oxidoreductase; Provisional
Probab=73.90 E-value=31 Score=35.06 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=33.8
Q ss_pred HhcCCCCCCEEEEeCCchhHHHH---HHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCC
Q 009769 327 AVVDPQPGQSIVDCCAAPGGKTL---YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (526)
Q Consensus 327 ~~l~~~~g~~VLDl~aG~G~~t~---~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~ 384 (526)
....+++|++||=.|+ |+.+. ++|+.+.+...++++|.++.+.+.++ .+|.+
T Consensus 154 ~~~~~~~g~~vlI~g~--g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 154 GRTGPTEQDVALIYGA--GPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 3456788999998885 44444 44443213446899999998887654 45664
No 489
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.69 E-value=64 Score=31.52 Aligned_cols=75 Identities=16% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
+.++|-.|+ +|+.+.+++..+. .+.+|+.++.++..++.+.+ ..+ ..+.++.+|+.+.... ..+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 567887775 4667777666553 34589999998876554433 223 2367788888764211 124
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.++.++..
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68998877643
No 490
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=73.55 E-value=56 Score=31.38 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=48.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009769 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (526)
Q Consensus 333 ~g~~VLDl~aG~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~ 402 (526)
.|.+||=.|++ |+.+.++++.+-. +.+|+.++.++ ...+.+.++..+ ..+.++..|+.+.... ..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36788888885 5677777766543 35899998765 334444455544 2367788888764321 12
Q ss_pred CCCcEEEEcCCC
Q 009769 403 VKCDKVLLDAPC 414 (526)
Q Consensus 403 ~~fD~Vl~D~Pc 414 (526)
...|.|+.++-.
T Consensus 79 ~~~d~li~~ag~ 90 (248)
T TIGR01832 79 GHIDILVNNAGI 90 (248)
T ss_pred CCCCEEEECCCC
Confidence 468999887654
No 491
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=73.22 E-value=43 Score=33.80 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEeCCc-hhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcE
Q 009769 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (526)
Q Consensus 329 l~~~~g~~VLDl~aG-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~ 407 (526)
....++++||-.|+| .|..+..+|+.++ .+|++++.++.+.+.++ ..|.+..+.....+...- ....+|.
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~---~~~~~d~ 228 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELAR----KLGADEVVDSGAELDEQA---AAGGADV 228 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HhCCcEEeccCCcchHHh---ccCCCCE
Confidence 456788899998876 5556666666643 57999999988876653 345432111111111110 1235888
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
|+ | |.+.+ ..+..+++.|+++|+++..
T Consensus 229 vi-~--~~~~~-------------------------~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 IL-V--TVVSG-------------------------AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EE-E--CCCcH-------------------------HHHHHHHHhcccCCEEEEE
Confidence 76 3 32211 1366778899999988754
No 492
>PRK08628 short chain dehydrogenase; Provisional
Probab=72.95 E-value=59 Score=31.51 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=48.7
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
|.+||=.|+ +|+.+.+++..+. .+..++.++.++... .+.+.+...+. .+.++..|+.+.... ..+
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQP--RAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 567887776 4677777776553 345788888888776 33344444443 367788888764311 014
Q ss_pred CCcEEEEcCCC
Q 009769 404 KCDKVLLDAPC 414 (526)
Q Consensus 404 ~fD~Vl~D~Pc 414 (526)
..|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (258)
T PRK08628 83 RIDGLVNNAGV 93 (258)
T ss_pred CCCEEEECCcc
Confidence 68999876653
No 493
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.67 E-value=57 Score=32.01 Aligned_cols=126 Identities=10% Similarity=-0.062 Sum_probs=63.9
Q ss_pred CCCEEEEeCC-chhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009769 333 PGQSIVDCCA-APGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (526)
Q Consensus 333 ~g~~VLDl~a-G~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~ 401 (526)
.+.+||=.|+ |+++.+.++|+.+. ...+|+.++......+.+++..+..+. ..++..|+.+.... .
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS---DLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC---cceeeccCCCHHHHHHHHHHHHHH
Confidence 3678999998 57888888776654 345777776543223333333333332 23466787654211 1
Q ss_pred CCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHHccCcCCCEEEEEe
Q 009769 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLVKPGGVLVYST 463 (526)
Q Consensus 402 ~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~----~q~~lL~~a~~~LkpGG~lvyst 463 (526)
.+.+|.++.++-......... + .....+.+++..... -...+.+.++..++.+|.++..+
T Consensus 82 ~g~iD~lvnnAG~~~~~~~~~-~-~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~is 145 (260)
T PRK06997 82 WDGLDGLVHSIGFAPREAIAG-D-FLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 145 (260)
T ss_pred hCCCcEEEEccccCCcccccc-c-cchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEe
Confidence 257899988764321100000 0 000112223322211 12234566677777778776543
No 494
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=72.58 E-value=24 Score=35.42 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=56.5
Q ss_pred hcCCCCCCEEEEeCC--chhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc----c-c
Q 009769 328 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA----D-N 400 (526)
Q Consensus 328 ~l~~~~g~~VLDl~a--G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~----~-~ 400 (526)
...+++|++||=.|+ +.|..+.++|+.++ .+++++.-+....+.++ ..|++. ++..+-..+. . .
T Consensus 134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~----~~g~~~---~~~~~~~~~~~~i~~~~ 204 (324)
T cd08292 134 FLGVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELR----ALGIGP---VVSTEQPGWQDKVREAA 204 (324)
T ss_pred hhCCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHH----hcCCCE---EEcCCCchHHHHHHHHh
Confidence 356778999988765 36667777887754 46777766666555443 346542 2222111111 0 1
Q ss_pred CCCCCcEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 401 ~~~~fD~Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
....+|.|+ | |+|.. .+..+++.|+++|+++..
T Consensus 205 ~~~~~d~v~-d--~~g~~--------------------------~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 205 GGAPISVAL-D--SVGGK--------------------------LAGELLSLLGEGGTLVSF 237 (324)
T ss_pred CCCCCcEEE-E--CCCCh--------------------------hHHHHHHhhcCCcEEEEE
Confidence 124689887 3 54311 256678889999998743
No 495
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=72.40 E-value=60 Score=31.53 Aligned_cols=75 Identities=20% Similarity=0.082 Sum_probs=45.6
Q ss_pred CCEEEEeCCchhHHHHHHHHHcc-CCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009769 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (526)
Q Consensus 334 g~~VLDl~aG~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~---------~~~ 403 (526)
|.++|-.|+ +|+.+.++++.+. .+.+|+++|.+.. ....+.+...+. .+..+..|+.+.... ..+
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGR--RFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567887776 5677777777653 3468888887642 233333444432 367778888653211 124
Q ss_pred CCcEEEEcCC
Q 009769 404 KCDKVLLDAP 413 (526)
Q Consensus 404 ~fD~Vl~D~P 413 (526)
..|.++.++-
T Consensus 85 ~~D~li~~Ag 94 (253)
T PRK08993 85 HIDILVNNAG 94 (253)
T ss_pred CCCEEEECCC
Confidence 6898887653
No 496
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.35 E-value=24 Score=37.05 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=52.8
Q ss_pred CCCCEEEEeCCch-hHHHHHHHHHccCCcEEEEEcCChhH-HHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEE
Q 009769 332 QPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (526)
Q Consensus 332 ~~g~~VLDl~aG~-G~~t~~la~~~~~~~~v~avD~s~~~-l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl 409 (526)
++|++||=.|+|+ |..+.++|+.++ .+|++++.+++. .+. ++.+|.+..+. ..+...+... ...+|.|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~----a~~lGa~~~i~--~~~~~~v~~~-~~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREA----IDRLGADSFLV--TTDSQKMKEA-VGTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHH----HHhCCCcEEEc--CcCHHHHHHh-hCCCcEEE
Confidence 5789998887643 334456666643 478899887554 333 34567653111 1111111111 12488776
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEE
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvys 462 (526)
| |+|.. ..+..+++.+++||+++..
T Consensus 248 -d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 248 -D--TVSAE-------------------------HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -E--CCCcH-------------------------HHHHHHHHhhcCCCEEEEE
Confidence 3 44311 1267778889999998853
No 497
>PRK07578 short chain dehydrogenase; Provisional
Probab=72.16 E-value=24 Score=32.88 Aligned_cols=102 Identities=20% Similarity=0.147 Sum_probs=54.1
Q ss_pred EEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccccc------ccCCCCCcEEE
Q 009769 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------DNSTVKCDKVL 409 (526)
Q Consensus 336 ~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~------~~~~~~fD~Vl 409 (526)
++|-.|+ +|+.+.++++.+....+|+.++.++. .+..|+.+.. .. -++.|.|+
T Consensus 2 ~vlItGa-s~giG~~la~~l~~~~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~-~~~id~lv 60 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSKRHEVITAGRSSG-------------------DVQVDITDPASIRALFEK-VGKVDAVV 60 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHhcCcEEEEecCCC-------------------ceEecCCChHHHHHHHHh-cCCCCEEE
Confidence 4666775 57788888876643367888877643 1123333211 11 13689888
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHHccCcCCCEEEEEeCC
Q 009769 410 LDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 465 (526)
Q Consensus 410 ~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l----~~~q~~lL~~a~~~LkpGG~lvystcs 465 (526)
.++.....+.+.. .+.++.... ......+.+.+...++++|.+++.++.
T Consensus 61 ~~ag~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~ 113 (199)
T PRK07578 61 SAAGKVHFAPLAE-------MTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGI 113 (199)
T ss_pred ECCCCCCCCchhh-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEccc
Confidence 7654322222111 122222211 122234566667777788988877653
No 498
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.77 E-value=31 Score=36.95 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=57.2
Q ss_pred CCCCEEEEeCCchhHHHHHHHHHccCCcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCcEEEEc
Q 009769 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (526)
Q Consensus 332 ~~g~~VLDl~aG~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 411 (526)
.+|++|+=+|+|+=|.......+.. +.+|+.+|.++.++..+. ..|.. .+ +..+.. ..+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~----~~G~~----~~--~~~e~v----~~aDVVI~- 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAA----MEGYE----VM--TMEEAV----KEGDIFVT- 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHH----hcCCE----Ec--cHHHHH----cCCCEEEE-
Confidence 4699999999999776655443323 358999999999877664 35653 11 111111 34798864
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH-HccCcCCCEEEEEe
Q 009769 412 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA-SLLVKPGGVLVYST 463 (526)
Q Consensus 412 ~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a-~~~LkpGG~lvyst 463 (526)
|+| . ..++..+ ...+|+||+++...
T Consensus 264 --atG--~-----------------------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 --TTG--N-----------------------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred --CCC--C-----------------------HHHHHHHHHhcCCCCcEEEEeC
Confidence 433 1 1235554 88999999998654
No 499
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.72 E-value=5.3 Score=42.03 Aligned_cols=121 Identities=19% Similarity=0.287 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHccC-CcEEEEEcCChhHHHHHHHHHHHcCCCccEEEEcCcccc----------ccc-cCC---CCCcE
Q 009769 343 APGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----------FAD-NST---VKCDK 407 (526)
Q Consensus 343 G~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~n~~~~g~~~~v~~~~~D~~~----------~~~-~~~---~~fD~ 407 (526)
|-|+.++.+|..+.. +..|+|+|+++.+++.+.+ |- ..+..-|... +.. ... ...|.
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~---~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GE---SYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Cc---ceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 456666655554433 4689999999999987643 21 1122222111 000 001 25788
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHHccCcCCCEEEEEeCCCChhhhHHHHHHHHHhCCCCeE
Q 009769 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 487 (526)
Q Consensus 408 Vl~D~Pcsg~G~l~~~p~~~~~~~~~~l~~l~~~q~~lL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 487 (526)
+++-.|.--.+ .+.||+.+- ..-.+.....|++|-.+++- -|..|.-.|+++...++..++...
T Consensus 88 ~iI~VPTPl~~--~~~pDls~v-------------~~aa~sIa~~L~kG~LVIlE-ST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 88 FIICVPTPLKK--YREPDLSYV-------------ESAARSIAPVLKKGDLVILE-STTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred EEEEecCCcCC--CCCCChHHH-------------HHHHHHHHHhcCCCCEEEEe-cCCCCCcHHHHHHHHHhhcCCCcc
Confidence 88777764333 266765432 12356678899987766654 456777888899888887665433
No 500
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=71.72 E-value=25 Score=36.49 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=24.2
Q ss_pred CEEEEeCCchhHHHHHHHHHc--------cC-------CcEEEEEcCChhHHHHH
Q 009769 335 QSIVDCCAAPGGKTLYMASCL--------SG-------QGLVYAIDINKGRLRIL 374 (526)
Q Consensus 335 ~~VLDl~aG~G~~t~~la~~~--------~~-------~~~v~avD~s~~~l~~a 374 (526)
-+|.|+||+.|..|+.+.+.+ .. .-+|+-.|+-..=...+
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~l 72 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTL 72 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHH
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHH
Confidence 489999999999998766532 11 23788888755444433
Done!