RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009769
(526 letters)
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 430 bits (1109), Expect = e-148
Identities = 124/477 (25%), Positives = 206/477 (43%), Gaps = 31/477 (6%)
Query: 50 TQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD 109
+ L + P + + +R+ + + +
Sbjct: 3 AEKKKLSIPPKGIRAIIEAIRLGEIIKPSQYA--------------KREAFK-KHDVEEA 47
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
R++T I ++ + +D +I + T ++P L LR+ + D P
Sbjct: 48 WLNRVLTMIFYDIMKKQGLIDKVIKEIVG--VTPLILDPWLRAALRVAVDIALFHD-PSS 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+ A + V +L K P PK + L Y
Sbjct: 105 QTIKNLRWKASDFISSRTHPYVGMYFWD-LLDKIFEYKPNPK------NELEELEWKYLA 157
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W++ R LG E N S+R N+ K +++ +L V S
Sbjct: 158 PSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLK-ANVEEVIGELEEDGVEVVRSE 216
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ +++K N + EG VQ+E++ + V+DP+PG+++VD AAPGGKT
Sbjct: 217 RVPTILKIKGP-YNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTT 275
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKV 408
++A + +G +YA D++K R++ L + K + +++ + D R + + DKV
Sbjct: 276 HLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKV 334
Query: 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468
LLDAPC+ G + K +LRW R + + E+ LQ ELL++A+ LVKPGG L+Y+TCSI
Sbjct: 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394
Query: 469 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 525
EENE+ + FL HPEF + P F G + P +HS G F A L ++
Sbjct: 395 EENEKNIRWFLNVHPEFKLVPLKSPYDPGF--LEGTMRAWPHRHSTIGFFYALLEKS 449
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 393 bits (1013), Expect = e-133
Identities = 124/465 (26%), Positives = 210/465 (45%), Gaps = 45/465 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R+++A + ++ G + L + + D+D L+ ++
Sbjct: 8 RSMAAQAVEQVVEQGQSLSNI------------------LPPLQQKVSDKDKALLQELCF 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G +R LD LI L + + + + ++ +G Y+++ +PP+A + E V A
Sbjct: 50 GVLRTLSQLDWLINKLMA--RPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAI 107
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
RP L+NG+LR+ + L A+ A Y HP W+++R K
Sbjct: 108 AIKRPQLKGLINGVLRQF--QRQQEELL---------AEFNASDARYLHPSWLLKRLQKA 156
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG 300
E+ ++ NN P LR N +R + L+ + + +R++T
Sbjct: 157 YP-EQWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLDEAGMKGFPHADYPDAVRLETP 214
Query: 301 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 360
V ++G VQD SA + + PQ G+ I+D CAAPGGKT ++ ++ +
Sbjct: 215 -APVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQ 272
Query: 361 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGV 419
V A+DI++ RL + + K + D R + + D++LLDAPCS GV
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGV 330
Query: 420 LSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 479
+ + D++W RR D+ EL LQ E+LDA +K GG LVY+TCS+ PEEN +++AFL
Sbjct: 331 IRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFL 390
Query: 480 LRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 524
R + + + + P DG F A+L++
Sbjct: 391 QRTADAELCETG-------TPEQPGKQNLPGAEEGDGFFYAKLIK 428
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 281 bits (721), Expect = 2e-91
Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 13/310 (4%)
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ R+ + G E AI++ R N+ K ++ DLV +LN
Sbjct: 10 KLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLNKKG 67
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ E + ++ GL +Q+ S+ +DP+PG+ + D A
Sbjct: 68 FQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAA 127
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT Y+A + G++YA D+++ RLR V +VI H+ +
Sbjct: 128 APGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI-LFHSSSLHIGE-LN 185
Query: 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 462
V+ DK+LLDAPC+G G + K + +WNR ++D++ + LQ LL+ ++KPGG+LVYS
Sbjct: 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245
Query: 463 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD--------PIKHSL 514
TCS++PEENE ++ L + + + P P+ + P H
Sbjct: 246 TCSLEPEENEFVIQWA-LDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHET 304
Query: 515 DGAFAARLVR 524
G F A++ +
Sbjct: 305 SGFFIAKIRK 314
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 274 bits (704), Expect = 4e-87
Identities = 89/304 (29%), Positives = 136/304 (44%), Gaps = 16/304 (5%)
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P + R + LG+E L ++ LR N+ K + + P
Sbjct: 3 PKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLK-LPPEAF---QRISPWPLRPIP 58
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
E GL +Q+ SA V ++DP+PG+ ++D AAPGGKT
Sbjct: 59 WCQEGFYYPEE-ARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A+ + G+GL+ A +++ R+R L E + + A R A+ +VL
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAV--TQAPPRALAEAFGTYFHRVL 175
Query: 410 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 469
LDAPCSG G+ K + + + + +Q LL AS L+ PGGVLVYSTC+ PE
Sbjct: 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE 235
Query: 470 ENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSD--------PIKHSLDGAFAA 520
ENE V FL HPEF ++ A + + V + G + P + +G F A
Sbjct: 236 ENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLA 295
Query: 521 RLVR 524
R +
Sbjct: 296 RFRK 299
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 267 bits (685), Expect = 3e-84
Identities = 73/304 (24%), Positives = 133/304 (43%), Gaps = 15/304 (4%)
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
+ P ++++ LG+E + R N K D+V + ++ +
Sbjct: 7 TLPQQFIKKYRLLLGEEASDFFSALEQGSVKKGFRWNPLK-PAGLDMVQTYHSEEL--QP 63
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+ + +E ++ L + G Q+ SA +V +PG+ ++D CAAPGGK
Sbjct: 64 APYSNEGFLGTVNGKSF----LHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGK 119
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
+ +A+ + G+GL+ +I R +IL+E + V++ I + + + D+
Sbjct: 120 STQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAI-VTNHAPAELVPHFSGFFDR 178
Query: 408 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 467
+++DAPCSG G+ K + E + Q E+L +A ++K G L+YSTC+
Sbjct: 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238
Query: 468 PEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD-------PIKHSLDGAFAA 520
PEENEE + + +P + S ++ G P K +G F A
Sbjct: 239 PEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGEGHFVA 298
Query: 521 RLVR 524
+L
Sbjct: 299 KLTF 302
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 263 bits (674), Expect = 2e-82
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 15/309 (4%)
Query: 227 YSHPVWMVRRWTKYLGQE-EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
P + + + + + S+R N+ K ++ AD +
Sbjct: 6 VYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLK-ISVADFLQLTAPYGWTL 64
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKE---GLCAVQDESAGLVVAV--VDPQPGQSIVDC 340
+E ++ ++ + G E GL +Q+ S+ L VA D Q ++D
Sbjct: 65 TPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDV 124
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
AAPG KT +++ ++ +G + A + + R+++L+ +++V H D R F
Sbjct: 125 AAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVA-LTHFDGRVFGAA 183
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 460
D +LLDAPCSG GV+ K D N E +E+ Q EL+D+A ++PGG LV
Sbjct: 184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLV 243
Query: 461 YSTCSIDPEENEERVEAFLLRHPE-FSIDPADGLVP--SDFVTKHGF--FFSDPIKHSLD 515
YSTC+++ EENE +P+ P L P + +T+ GF F P + +
Sbjct: 244 YSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVF--PQIYDCE 301
Query: 516 GAFAARLVR 524
G F ARL +
Sbjct: 302 GFFVARLRK 310
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 241 bits (617), Expect = 2e-76
Identities = 77/281 (27%), Positives = 127/281 (45%), Gaps = 21/281 (7%)
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKE 312
+ +R N+ K + L +L V E + LD VK ++
Sbjct: 5 YKGEKMQFIRVNTLK-INPEVLKKRLENKGVVLEKT-FLDYAFEVKKSPFSIGSTPEYLF 62
Query: 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
G Q S+ + V++P+ I+D CAAPGGKT ++A + +G + A++I+K R +
Sbjct: 63 GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTK 122
Query: 373 ILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWN 429
L V + I I+AD+R + D + + DK+LLDAPCSG + K N
Sbjct: 123 ALKSNINRMGVLNTI-IINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK----NRN 177
Query: 430 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 489
ED++ + Q EL+D L+K G LVYSTCS++ EENEE ++ L + + +
Sbjct: 178 VSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELII 237
Query: 490 ADGLVPSDFVTKHGFFFSDPIK------HSLDGAFAARLVR 524
+ ++ + + F A+L +
Sbjct: 238 ----IKANEFKGINIKEGYIKGTLRVFPPN-EPFFIAKLRK 273
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 236 bits (604), Expect = 4e-74
Identities = 73/292 (25%), Positives = 113/292 (38%), Gaps = 31/292 (10%)
Query: 260 SLRANSRKGVTRADLVMQL------------------NLLKVPHELSLHLDEFIRVKTGL 301
+R N+ K D+V L L + E +
Sbjct: 13 FVRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ- 70
Query: 302 QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV 361
++ + L + G +QD ++ L ++DP PG ++D CAAPG KT ++A+ L QG +
Sbjct: 71 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 130
Query: 362 YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA--DNSTVKCDKVLLDAPCSGLGV 419
+A D++ RL + V+ D + D + +LLD CSG G+
Sbjct: 131 FAFDLDAKRLASMATLLARAGVSCCE-LAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM 189
Query: 420 LSKRADLRWNRRLED--MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477
S++ + + L Q L A LVYSTCS+ EENE+ V
Sbjct: 190 PSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-PSLQRLVYSTCSLCQEENEDVVRD 248
Query: 478 FLLRHP-EFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDGAFAARLVR 524
L ++P F + PA P S F + P G F A + R
Sbjct: 249 ALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 300
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT
site, phage lambda, lambdan antitermina antitermination;
HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A
1ey1_A
Length = 141
Score = 65.8 bits (161), Expect = 4e-13
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV-K 163
+D+ D D+ +++ G YLD L+ + + + + +LRI YE+ +
Sbjct: 40 QDVKDVDVLYFRELLAGVATNTAYLDGLMK--PYLSRLLEELGQVEKAVLRIALYELSKR 97
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
D+P ++E + LAK + VNG+L K
Sbjct: 98 SDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 132
>3r2d_A Protein NUSB, N utilization substance protein B; cross species
NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB:
2jr0_A 3r2c_A*
Length = 149
Score = 58.9 bits (143), Expect = 1e-10
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+ D + +V +R +D +I + + + LR+G E++ L
Sbjct: 40 KNKDAYEY--AKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFL 96
Query: 165 DMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
V + V L K AG VNG+L +
Sbjct: 97 KSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIY 132
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical
bundle, structural genomics, PSI, protein structure
initiative; 1.60A {Mycobacterium tuberculosis} SCOP:
a.79.1.1
Length = 156
Score = 58.2 bits (141), Expect = 2e-10
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 97 ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRI 156
R K R + G ++D LI T + + ILR+
Sbjct: 37 TRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRV 95
Query: 157 GFYEIVKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
+E++ P VV DE V+LAK + VNG+L +++
Sbjct: 96 SVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVM 139
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 58.0 bits (140), Expect = 5e-10
Identities = 20/155 (12%), Positives = 41/155 (26%), Gaps = 21/155 (13%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+VD G T ++A VYA D+ + L ++ + + I
Sbjct: 21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENT-ELIL 76
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
+ + AD + E ++
Sbjct: 77 DGHENLDHYVREPIRAAIFNLG------YLPSADKSVITKPHTTL-------EAIEKILD 123
Query: 452 LVKPGGVL---VYSTCSIDPEENEERVEAFLLRHP 483
++ GG L +Y E + V +++
Sbjct: 124 RLEVGGRLAIMIYYGHDGGDMEKDA-VLEYVIGLD 157
>1tzv_A NUSB protein, N utilization substance protein B homolog;
RNA-protein interaction, transcriptional
antitermination, transcription regulation; 1.35A
{Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A
1tzw_A 1tzx_A*
Length = 142
Score = 56.2 bits (136), Expect = 9e-10
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D + + G +D LI ++ + + + + +LR+ YE+
Sbjct: 34 ILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYEL 92
Query: 162 VKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
+ P V DE + +AK +G VNGIL ++
Sbjct: 93 LFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 58.3 bits (141), Expect = 2e-09
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 34/145 (23%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+VD A G ++ +YAIDIN + +L + KL+++ I I
Sbjct: 194 SLNDVVVDMFAGVGPFSIACK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
+D+R ++V+++ P + +D A
Sbjct: 250 SDVREVDVK----GNRVIMNLPKFA--------------------------HKFIDKALD 279
Query: 452 LVKPGGVLVYSTCSIDPEENEERVE 476
+V+ GGV+ Y T D ++ + E
Sbjct: 280 IVEEGGVIHYYTIGKDFDKAIKLFE 304
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 54.9 bits (132), Expect = 7e-09
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 19/161 (11%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ G ++VD G T ++AS + G V+ DI + + + + I
Sbjct: 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
+ V+ + D + R E + L A
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLG------YLPSGDHSISTRPETTI-------QALSKAME 127
Query: 452 LVKPGG---VLVYSTCSIDPEENEERVEAFL--LRHPEFSI 487
L+ GG V++Y EE +E+V FL + +F +
Sbjct: 128 LLVTGGIITVVIYYGGDTGFEE-KEKVLEFLKGVDQKKFIV 167
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 55.9 bits (134), Expect = 8e-09
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381
A ++ +PG I++ G + Y+ L+G+G + ++ ++ L+ +
Sbjct: 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 158
Query: 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
+RT +D+ F + D V+ D P
Sbjct: 159 YDIGNVRTSRSDIADFISDQMY--DAVIADIP 188
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 55.6 bits (134), Expect = 2e-08
Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 23/187 (12%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG ++D GG ++ A ++G V ID + + E AKL+ V ++ I
Sbjct: 216 QPGDRVLDVFTYTGGFAIHAA--IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV 273
Query: 392 AD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 447
+ K D V+LD P + + +D++ +
Sbjct: 274 GSAFEEMEKLQKKGE-KFDIVVLDPP-------------AFVQHEKDLKAGLRAYFNVNF 319
Query: 448 AASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSIDPADGLVPSDFVTKHGF 504
A LVK GG+LV +CS +D + ++ + A + D
Sbjct: 320 AGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMAS 379
Query: 505 FFSDPIK 511
++ +K
Sbjct: 380 KDTEYLK 386
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 3e-08
Identities = 99/577 (17%), Positives = 169/577 (29%), Gaps = 209/577 (36%)
Query: 25 QAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVS---PHRAVSAVRLMRIQFGGAFADLL 81
A STR P ++S + +LE P + ++ QF L
Sbjct: 2 DAYSTR-P-LTLS--------------HGSLEHVLLVPTASFFIASQLQEQF---NKILP 42
Query: 82 NKKGKGSGDNE----MGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRW--RRYLD----H 131
+ D+E V + LG+ + ++ + ++ + YL+ H
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 132 -LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY----------AVVDENVRLAK 180
L L + T ++++ + + P+ AV + N +L
Sbjct: 103 ALAAKLLQENDT---TLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQL-- 156
Query: 181 VALRPGAGNLVNGI--LRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
VA+ G GN + LR L VL+ D L + A L+ + +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGD-----LI-----KFS-AETLSELIRTTL-- 203
Query: 234 VRRWTKYLGQEEAIKLMVW-NNSD--PS--------FSLRANSRKGVTRADLVMQLNLLK 282
K Q + ++ W N P S GV QL
Sbjct: 204 --DAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLI---GVI------QL---- 246
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV----D-------- 330
H ++ G G L+ L S GLV AV D
Sbjct: 247 ------AHYVVTAKL-LGFT----PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 331 -------------------PQPG--QSIVDCCAAPG-GKTLYMASC--LSGQGLVYAID- 365
P SI++ G M S L+ + + ++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 366 INK-----GRLRI-LNETAK----------LHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
N ++ I L AK L+ +N +R A + D S +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIP----- 408
Query: 410 LDAPCSGLGVLSKRADLRWNRR------------LEDMEELKILQD-----ELLDAASLL 452
S+R L+++ R L +L I +D +A +
Sbjct: 409 ----------FSERK-LKFSNRFLPVASPFHSHLLVPASDL-INKDLVKNNVSFNAKDIQ 456
Query: 453 VKPGGVLVYST------CSIDPEENEERVEAFLLRHP 483
+ P VY T + +E V+ ++R P
Sbjct: 457 I-P----VYDTFDGSDLRVLSGSISERIVDC-IIRLP 487
Score = 55.1 bits (132), Expect = 5e-08
Identities = 85/517 (16%), Positives = 152/517 (29%), Gaps = 181/517 (35%)
Query: 11 RILVSTD----ASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPH-----R 61
L D A+K L + + K + I A++ R R
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK------KSNSALFR 147
Query: 62 AVSA--VRLMRIQFGGAFADLLNKKGKGSGDNEMGYVE--RTLGFRT-----KDLDDRDL 112
AV +L+ I FGG G+ + Y E R L ++T DL
Sbjct: 148 AVGEGNAQLVAI-FGG------------QGNTD-DYFEELRDL-YQTYHVLVGDLIKFSA 192
Query: 113 RLVTDIVGGTIRWRRYLDH---LICLLCHDEKTFS---------SMEPL--LLQILRIGF 158
+++++ T+ + ++ L + T S PL ++Q+
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAH--- 248
Query: 159 YEIV--KLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
Y + L P + L GA G++ + +
Sbjct: 249 YVVTAKLLGFTPGELRS---YLK------GATGHSQGLVTAVAI---------------- 283
Query: 217 RAQARALATIYSHPVWMVRRWTKYLG---QEEAIKLMVW----------NNSDPS--FSL 261
A+ + + + + ++G E + N PS S+
Sbjct: 284 -AETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 262 RANSRKGVTRADL---VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAG----LLKEGL 314
+T+ + V + N +P + I + G +N++ +G L GL
Sbjct: 342 S-----NLTQEQVQDYVNKTNS-HLPAGKQVE----ISLVNGAKNLVVSGPPQSL--YGL 389
Query: 315 C-AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK-----------------TLYMASC-- 354
++ A QS P + + +
Sbjct: 390 NLTLRKAKA-------PSGLDQS-----RIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 355 -----LSGQGL----------VYAIDINKGR-LRILNETAKLHQVNSVIR-TIHADLRTF 397
L + VY D G LR+L+ + V+ +IR + + T
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVY--DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 398 ADNSTVKCDKVLLD-AP--CSGLGVLSKR-ADLRWNR 430
+ + LD P SGLGVL+ R D R
Sbjct: 496 FKATHI------LDFGPGGASGLGVLTHRNKDGTGVR 526
Score = 37.7 bits (87), Expect = 0.012
Identities = 57/344 (16%), Positives = 104/344 (30%), Gaps = 124/344 (36%)
Query: 87 GS---GDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR--WRRYLDHLICLLCHDEK 141
GS G MG DL + + W R +H D
Sbjct: 1625 GSQEQG---MG---------------MDLYKTSKAA----QDVWNRADNHFK-----DTY 1657
Query: 142 TFSSME-----PLLLQILRIGF--------YEIVKLDMPPYAVVDENVRLAKVALRPGAG 188
FS ++ P+ L I G Y + + D ++ K+
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV----DGKLKTEKIF------ 1707
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI-YSHPVWMVRRWTKYLGQEEAI 247
+N + L + Q AL + + + + +
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQ---F--TQ-PALTLMEKA----AFEDL-----KSKGL 1752
Query: 248 KLMVWNNSDPSF---SLRANSRKG-----VTRADLVMQL-NLLKVPHELSLHLDEFIRVK 298
+D +F SL G + AD VM + +L++V + F R
Sbjct: 1753 I-----PADATFAGHSL------GEYAALASLAD-VMSIESLVEV-------V--FYRGM 1791
Query: 299 TGLQNVI---QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA--S 353
T +Q + + G G+ A+ + G V A + Q +V+ G + + +
Sbjct: 1792 T-MQVAVPRDELGRSNYGMIAI---NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 354 CLSGQ----GLVYAID----------INKGRLRILNETAKLHQV 383
+ Q G + A+D + K + L ++ L +V
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 33.9 bits (77), Expect = 0.16
Identities = 38/187 (20%), Positives = 57/187 (30%), Gaps = 72/187 (38%)
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGIL---RKLVLLKDNNSLPL--PKLEGNDRAQAR 221
PP ++ N+ L K G + I RKL N LP+ P
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLKF--SNRFLPVASP----------- 426
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMV---------WNNSD---PSFS------LRA 263
+ H + L A L+ +N D P + LR
Sbjct: 427 -----F-H--------SHLL--VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 264 NSRKGVTR-ADLVMQLNLL--KVPHELSLHLDEF------------IRVK--TGLQNVIQ 306
S R D +++L + + H+ +F R K TG++ VI
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR-VIV 529
Query: 307 AGLLKEG 313
AG L
Sbjct: 530 AGTLDIN 536
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 65/411 (15%), Positives = 130/411 (31%), Gaps = 132/411 (32%)
Query: 150 LLQILRIGF------YEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203
+L + F ++ DMP + E + + + + V+G LR L
Sbjct: 21 ILSVFEDAFVDNFDCKDV--QDMPKSILSKEEID--HIIMSK---DAVSGTLRLFWTLLS 73
Query: 204 NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLM-------VWNNSD 256
E + L Y +++ Q + M ++N++
Sbjct: 74 KQE------EMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 257 PSFSLRANSRKGVTRADLVMQLN--LLKV-PHE-LSLHLDEFIRVKTGLQNVIQAGLLKE 312
F+ + V+R ++L LL++ P + + + G+ G
Sbjct: 125 V-FA-----KYNVSRLQPYLKLRQALLELRPAKNVLID---------GV-----LG---- 160
Query: 313 GLCAVQDESAG---LVVAVVDPQPGQSIVDCCAAPGGKTLY---MASCLSG-------QG 359
+G + + V Q C ++ + +C S Q
Sbjct: 161 ---------SGKTWVALDVCLSYKVQ-----CKMDFK--IFWLNLKNCNSPETVLEMLQK 204
Query: 360 LVYAIDINKGRL--RILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417
L+Y ID N N ++H + + +R R C LL
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR------RLLKSKPYENC---LL------- 248
Query: 418 GVLSKRADLRWNRRLEDMEEL--KIL---QD-ELLDAASLLVKPGGVLVYSTCSIDPEEN 471
VL ++ N + + L KIL + ++ D S L + + ++ P+E
Sbjct: 249 -VLL---NV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 472 EERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 522
+ + +L P D +P + +T + P + S+ A +
Sbjct: 304 KSLLLKYL------DCRPQD--LPREVLTTN------PRRLSI---IAESI 337
Score = 48.3 bits (114), Expect = 5e-06
Identities = 63/382 (16%), Positives = 126/382 (32%), Gaps = 97/382 (25%)
Query: 98 RTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIG 157
+ L T+ + VTD + LDH L DE LLL+ L
Sbjct: 267 KIL-LTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDE----VKS-LLLKYL--- 311
Query: 158 FYEIVKLDMPPYAVVDENVRLAKVA--LRPGAGNLVNGILRKLVL--LKDNNSLPLPKLE 213
+ D+P + RL+ +A +R G N + + L L LE
Sbjct: 312 --DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLE 367
Query: 214 GND-RAQARALATIYSHPVW-----MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
+ R L+ ++ + W + + ++V N +SL K
Sbjct: 368 PAEYRKMFDRLS-VFPPSAHIPTILLSLIWFD--VIKSDVMVVV--NKLHKYSLVEKQPK 422
Query: 268 GVTRA--DLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
T + + ++L +K+ +E +LH ++++ + + S L+
Sbjct: 423 ESTISIPSIYLEL-KVKLENEYALH-----------RSIVDHYNIPKTFD-----SDDLI 465
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+D Y S + + + + + + +
Sbjct: 466 PPYLDQ------------------YFYS-----HIGHHL-----------KNIEHPERMT 491
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR--LEDMEELKILQD 443
+ R + D R F + ++ D +A S L L L++ + ++ + + L +
Sbjct: 492 LFRMVFLDFR-FLEQ-KIRHDSTAWNASGSILNTLQ---QLKFYKPYICDNDPKYERLVN 546
Query: 444 ELLDAASLLVKPGGVLVYSTCS 465
+LD L K L+ S +
Sbjct: 547 AILD---FLPKIEENLICSKYT 565
Score = 30.6 bits (68), Expect = 1.5
Identities = 30/202 (14%), Positives = 67/202 (33%), Gaps = 54/202 (26%)
Query: 10 PRILVSTDASKALSKQAASTRKPRT----SISTKKRAKVSPSRRTQNLNLEVSPHRA-VS 64
++V+ +L ++ K T SI + + K L E + HR+ V
Sbjct: 404 VMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVK---------LENEYALHRSIVD 451
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDN----EMGY-------VERTLGFRTKDLDDR--- 110
+ + + D +G+ ER FR LD R
Sbjct: 452 HYNIPK-------TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 111 -DLRLVTDIVGGT-------IRWRRYLDHLICLLC-HDEKTFSSMEPLLLQ----ILRIG 157
+R + + + + Y + IC E+ +++ L + ++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 158 FYEIVKLD-MPPY-AVVDENVR 177
+ +++++ M A+ +E +
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHK 585
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 51.4 bits (123), Expect = 2e-07
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 30/149 (20%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
I D GG+T+ +A ++GQ V +D G + I N A+ + + + I
Sbjct: 45 TEKSLIADIGCGTGGQTMVLAGHVTGQ--VTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102
Query: 392 ADLRT--FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 449
+ F + D + + + + +R W +
Sbjct: 103 GSMDDLPFRNEE---LDLIW--SEGAIYNIGFERGLNEWRK------------------- 138
Query: 450 SLLVKPGGVLVYSTCSIDPEENEERVEAF 478
+K GG L S CS +E + F
Sbjct: 139 --YLKKGGYLAVSECSWFTDERPAEINDF 165
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 50.6 bits (121), Expect = 4e-07
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L P I+D C+ G L +++ + + ++I + + + +Q+
Sbjct: 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAK--IVGVEIQERLADMAKRSVAYNQL 97
Query: 384 NSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRA--DLRWNRRLEDMEELKI 440
I I DL+ D + D V + P S + + R E M L
Sbjct: 98 EDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTL-- 155
Query: 441 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
++ + A+ L+K GG + E + + ++
Sbjct: 156 --EDTIRVAASLLKQGGKA----NFVHRPERLLDIIDIMRKY 191
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 49.9 bits (119), Expect = 7e-07
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 30/152 (19%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
I D GG+TL++A + GQ + ID+ + I NE A ++ I
Sbjct: 45 TDDAKIADIGCGTGGQTLFLADYVKGQ--ITGIDLFPDFIEIFNENAVKANCADRVKGIT 102
Query: 392 ADLRT--FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 449
+ F + D + + + + +R W++
Sbjct: 103 GSMDNLPFQNEE---LDLIW--SEGAIYNIGFERGMNEWSK------------------- 138
Query: 450 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 481
+K GG + S S E +E F +
Sbjct: 139 --YLKKGGFIAVSEASWFTSERPAEIEDFWMD 168
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 48.4 bits (115), Expect = 2e-06
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 33/155 (21%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+P + +VD A G +L +A + V AI+ + + L E L++V + +
Sbjct: 124 KPDELVVDMFAGIGHLSLPIAVYGKAK--VIAIEKDPYTFKFLVENIHLNKVEDRMSAYN 181
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
D R F + D++L+ E + A
Sbjct: 182 MDNRDFPGEN--IADRILMGYVVRT--------------------------HEFIPKALS 213
Query: 452 LVKPGGVL-VYSTCSID--PEENEERVEAFLLRHP 483
+ K G ++ ++T P E E + +
Sbjct: 214 IAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYG 248
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 45.9 bits (109), Expect = 6e-06
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 31/159 (19%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L ++ + P+P +++ D G + + Q +I++ R + A V
Sbjct: 16 LAISALAPKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSNAINLGV 74
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
+ + D+ D + + +
Sbjct: 75 SDR-IAVQQGAPRAFDDVPDNPDVIFIGGGLT--------------------------AP 107
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
+ AA + GG LV + ++ E+E+ + A +
Sbjct: 108 GVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQF 143
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 46.6 bits (111), Expect = 6e-06
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
V+ + G +++D G Y++ + +G VYAID+ + + E +
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 385 SVIRTIHADLRT--FADNSTVKCDKVLL 410
+V + ++ DN+ D + +
Sbjct: 89 NV-EVLKSEENKIPLPDNT---VDFIFM 112
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 45.9 bits (108), Expect = 9e-06
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 36/183 (19%)
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+ + + G I+ A G +M+ + +G +Y ++ +R L +
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---R 126
Query: 386 VIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
I I D R + D + D
Sbjct: 127 NIFPILGDARFPEKYRHLVEGVDGLYADVAQPE------------------------QAA 162
Query: 444 ELLDAASLLVKPGGVLVYS--TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK 501
++ A ++ GG ++ + SID V E GL D V
Sbjct: 163 IVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEV-----YKREIKTLMDGGLEIKDVVHL 217
Query: 502 HGF 504
F
Sbjct: 218 DPF 220
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 46.2 bits (110), Expect = 2e-05
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 24/142 (16%)
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392
PG+ ++D + GG L A A+D + L +L++ A + + H
Sbjct: 214 PGERVLDVYSYVGGFALRAAR---KGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHG 268
Query: 393 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELLDAAS 450
+ VLLD P L KR + + + +L+ A
Sbjct: 269 EALPTLRGLEGPFHHVLLDPP-----TLVKRPEELPA----------MKRHLVDLVREAL 313
Query: 451 LLVKPGGVLVYSTCS--IDPEE 470
L+ G L S+CS + E+
Sbjct: 314 RLLAEEGFLWLSSCSYHLRLED 335
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 45.4 bits (107), Expect = 2e-05
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 369
+K + A +V ++D PG +++ GG TL++A + +GLV + +
Sbjct: 73 MKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH 132
Query: 370 RLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
L + +R L A+ D V LD
Sbjct: 133 HLAQAERNVRAFWQVENVRFHLGKLEE-AELEEAAYDGVALDLM 175
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 44.7 bits (105), Expect = 2e-05
Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 37/185 (20%)
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ + I+ A+ G ++A ++ +G+VYAI+ +R L + + N I
Sbjct: 70 MPIKRDSKILYLGASAGTTPSHVA-DIADKGIVYAIEYAPRIMRELLDACA-EREN--II 125
Query: 389 TIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 446
I D + + + K D + D + L+
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYEDVAQPNQA------------------------EILI 161
Query: 447 DAASLLVKPGGVLVYS--TCSIDPEENEERV---EAFLLRHPEFSIDPADGLVPSDFVTK 501
A +K GG + + SID ++ + + + +L F I + P F
Sbjct: 162 KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP--FEKD 219
Query: 502 HGFFF 506
H F
Sbjct: 220 HVMFV 224
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 44.3 bits (104), Expect = 3e-05
Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 36/188 (19%)
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
V + +PG ++ AA G +++ + GLVYA++ + R L AK +
Sbjct: 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---T 126
Query: 386 VIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
I + D R + D + D
Sbjct: 127 NIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQT------------------------R 162
Query: 444 ELLDAASLLVKPGGVLVYS--TCSIDPEENEERV---EAFLLRHPEFSIDPADGLVPSDF 498
+ A ++ GG V S ID + E V E ++ L P +
Sbjct: 163 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEP--Y 220
Query: 499 VTKHGFFF 506
H
Sbjct: 221 ERDHAVVV 228
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 43.9 bits (103), Expect = 3e-05
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 24/161 (14%)
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
G+ + D A G + G V ++++K + +L E + + D
Sbjct: 50 GKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL----QDELLDAA 449
+ F + D V+++ P G K AD + + ++ ++ + E+
Sbjct: 106 VSEFNS----RVDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFI 158
Query: 450 SLLVKPGGVLVYSTCSIDPE---------ENEERVEAFLLR 481
G +V + E + ER+ + R
Sbjct: 159 EKFSWEHGFVVTHRLTTKIEIPLQFFFHRKKLERITVDIYR 199
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 44.7 bits (106), Expect = 4e-05
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++ G+ +D + GG L+ G V A+D + LR E A+L+ + +V
Sbjct: 203 LYMERFRGERALDVFSYAGGFALH---LALGFREVVAVDSSAEALRRAEENARLNGLGNV 259
Query: 387 IRTIHAD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
R + A+ LR + D V+LD P +K + +
Sbjct: 260 -RVLEANAFDLLRRLEKEGE-RFDLVVLDPP-----AFAKGKKDVERA-------YRAYK 305
Query: 443 DELLDAASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSI 487
+ + A L+K GG+L ++CS + V EA H +
Sbjct: 306 E-VNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV 352
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 43.2 bits (103), Expect = 5e-05
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
+PG ++VD AAPGG + Y+ + + G+G + A D+
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 43.5 bits (102), Expect = 7e-05
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
V +VD GG T+ A V AIDI+ ++ + A+++ + I
Sbjct: 73 VSQSFKCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKI 129
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 423
I D A +K D V L P G +
Sbjct: 130 EFICGDFLLLASF--LKADVVFLSPPWGGPDYATAE 163
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 42.1 bits (99), Expect = 1e-04
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 34/159 (21%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L +A + P+ G+ + D G ++ G I+ R+ + + + +
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL 102
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
+ +R + A + +A G G
Sbjct: 103 SPRMRAVQGT----APAALADLPLP--EAVFIGGGGS----------------------Q 134
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
L D + PG +V + ++ E+E + RH
Sbjct: 135 ALYDRLWEWLAPGTRIVANAVTL---ESETLLTQLHARH 170
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 41.8 bits (98), Expect = 3e-04
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L+ PG +++ G +T+ +A + + +IDI+ L E + + +
Sbjct: 28 LLHHDTVYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGI 86
Query: 384 NSVIRTIHADLRT--FADNS 401
+V + + A++ + F D+S
Sbjct: 87 KNV-KFLQANIFSLPFEDSS 105
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 41.6 bits (97), Expect = 3e-04
Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%)
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+PG+S++ A G +++ + +G ++ I+ + LR L + + N I
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE-ERRN--IV 125
Query: 389 TIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 446
I D + + K D + D L+
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPT------------------------QAKILI 161
Query: 447 DAASLLVKPGGVLVYS--TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF 504
D A + +K GG + + + SID + E+V + R + + L + H
Sbjct: 162 DNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYEKDHAL 221
Query: 505 FF 506
F
Sbjct: 222 FV 223
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 42.3 bits (100), Expect = 3e-04
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 25/139 (17%)
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHA 392
+ +++C + GG + + G V ++D ++ L I + +L++++ S +
Sbjct: 221 NKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD 278
Query: 393 D----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELL 446
D LRT+ D K D +++D P + + ++
Sbjct: 279 DVFKLLRTYRDRGE-KFDVIVMDPP-----KFVENKSQLMG----------ACRGYKDIN 322
Query: 447 DAASLLVKPGGVLVYSTCS 465
A L+ GG+L+ +CS
Sbjct: 323 MLAIQLLNEGGILLTFSCS 341
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 40.8 bits (96), Expect = 3e-04
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 32/159 (20%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L++ + +P VD GG TL +A + VYAID N + + H +
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELA-GRVRR--VYAIDRNPEAISTTEMNLQRHGL 80
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
+ + D A D + G G +
Sbjct: 81 GDNVTLMEGDA-PEALCKIPDIDIAV----VGGSGGELQ--------------------- 114
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
E+L +KPGG ++ + + E + L
Sbjct: 115 EILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDL 150
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 41.8 bits (99), Expect = 4e-04
Identities = 15/154 (9%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIH 391
G+++++ + ++ A + G ++D+ K + + + ++ + + +
Sbjct: 212 AGKTVLNLFSYTAAFSVAAA--MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269
Query: 392 AD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--EL 445
D + + D +++D P ++ ++ + +D +L
Sbjct: 270 MDVFDYFKYARRHHL-TYDIIIIDPP-----SFARNKKEVFS----------VSKDYHKL 313
Query: 446 LDAASLLVKPGGVLVYSTCS--IDPEENEERVEA 477
+ ++ G+++ ST + + + ++++E
Sbjct: 314 IRQGLEILSENGLIIASTNAANMTVSQFKKQIEK 347
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 40.5 bits (95), Expect = 6e-04
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 28/157 (17%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+PG+ I D G TL +A V +D+++ L I E A + +
Sbjct: 32 EPGKRIADIGCGTGTATLLLA-----DHYEVTGVDLSEEMLEIAQEKAMETNRH--VDFW 84
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450
D+R V D + + C L L AD++ + D+A+
Sbjct: 85 VQDMRELELPEPV--DAITI--LCDSLNYLQTEADVK----------------QTFDSAA 124
Query: 451 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 487
L+ GG L++ S E + + + S
Sbjct: 125 RLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSY 161
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 40.8 bits (95), Expect = 6e-04
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 33/154 (21%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ +VD A G T+ +A S LVYAI+ N L E KL+++N+VI I
Sbjct: 118 NENEVVVDMFAGIGYFTIPLAKY-SKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI-PIL 175
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
AD R D+V++ + LD
Sbjct: 176 ADNRDVELKD--VADRVIMGYVHKT--------------------------HKFLDKTFE 207
Query: 452 LVKPGGVL-VYSTC--SIDPEENEERVEAFLLRH 482
+K GV+ + T I E ER++ + ++
Sbjct: 208 FLKDRGVIHYHETVAEKIMYERPIERLKFYAEKN 241
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 40.0 bits (93), Expect = 8e-04
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 22/161 (13%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+P I+ + + G V ++D + ++ + +R
Sbjct: 41 RPEDRILVLGCGNSALSYELFL--GGFPNVTSVDYSSV---VVAAMQACYAHVPQLRWET 95
Query: 392 ADLR--TFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
D+R F S V +K LDA L W E + + D++L
Sbjct: 96 MDVRKLDFPSASFDVVLEKGTLDA-------LLAGERDPWTVSSEGVHTV----DQVLSE 144
Query: 449 ASLLVKPGGVLVYSTCSIDPEEN---EERVEAFLLRHPEFS 486
S ++ PGG + T + + + LRH +
Sbjct: 145 VSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYG 185
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 40.5 bits (94), Expect = 0.001
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 11/182 (6%)
Query: 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382
G + G +++D G + + G V +D+ +L + + + H
Sbjct: 73 GSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA 132
Query: 383 VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
+++R P S + ++ + L
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL---STNKLAL---- 185
Query: 443 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH 502
+ +L + GG L +S D +E + +L E V +
Sbjct: 186 --FKEIHRVL-RDGGELYFSDVYADRRLSEAAQQDPILY-GECLGGALYLEDFRRLVAEA 241
Query: 503 GF 504
GF
Sbjct: 242 GF 243
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 39.9 bits (93), Expect = 0.001
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV V IVD G L + L ID + L E +L
Sbjct: 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 72
Query: 384 NSVIRTIHADLRT--FADN 400
+ + D D
Sbjct: 73 D--SEFLEGDATEIELNDK 89
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+ + IVD G Y+ + + +Y IDIN L+ + E K V
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLE-FATK--LYCIDINVIALKEVKE--KFDSVI 63
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLL 410
++ +D + DNS D +L
Sbjct: 64 TL-----SDPKEIPDNS---VDFILF 81
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 39.7 bits (92), Expect = 0.001
Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 21/153 (13%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+PG + + L + + ID + L A H + I
Sbjct: 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR 176
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
D D + +GL + D + L A
Sbjct: 177 QDAWKLDTREGY--DLLT----SNGLNIY-----------EPDDARVTELYRRFWQA--- 216
Query: 452 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 484
+KPGG LV S + P + + P
Sbjct: 217 -LKPGGALVTSFLTPPPALSPDSPWDMQAIDPH 248
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 38.8 bits (91), Expect = 0.002
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 332 QPGQSIVDCCAAPGGKTLYMAS-CLSGQGLVYAIDI 366
+ + I+D PG + + + + ID
Sbjct: 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDK 56
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 39.4 bits (92), Expect = 0.002
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 34/186 (18%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
++A++D + G ++D G + +A+ + V I I++ ++ N A +
Sbjct: 52 EMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVR--VTGISISRPQVNQANARATAAGL 109
Query: 384 NSVIRTIHADLR--TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 441
+ + +AD F D S D V A S + + LR E ++L
Sbjct: 110 ANRVTFSYADAMDLPFEDAS---FDAVW--ALESLHHMPDRGRALR--------EMARVL 156
Query: 442 QDELLDAASLLVKPGGVLVYST-CSIDP--EENEERVEAFLLRHPEFSIDPADGLVPSDF 498
+PGG + + + P +E V+AF S+ D
Sbjct: 157 ------------RPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYE--SD 202
Query: 499 VTKHGF 504
V +
Sbjct: 203 VRQAEL 208
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 39.0 bits (91), Expect = 0.002
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
++ G + +D + PG ++ +A + A+D +K I + +N
Sbjct: 36 IINRFGITAG-TCIDIGSGPGALSIALAKQSDFS--IRALDFSKHMNEIALKNIADANLN 92
Query: 385 SVIRTIHADLRT--FADNS 401
I+ + D+ DN
Sbjct: 93 DRIQIVQGDVHNIPIEDNY 111
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 38.9 bits (90), Expect = 0.002
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN-----------KGRLRI 373
+ +PG+ I++ G + +A + G V IDI + +
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94
Query: 374 LNETAKLHQVNSVIRTIHADLRTFADNS 401
L + DL AD
Sbjct: 95 LAGPLGDRLTVHFNTNLSDDLGPIADQH 122
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 38.7 bits (90), Expect = 0.003
Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 29/175 (16%)
Query: 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 369
++E + A + Q +D A GG ++ + ++I
Sbjct: 59 IREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVS--IDCLNIAPV 116
Query: 370 RLRILNETAKLHQVNSVIRTIHADLRT--FADNSTVKCDKVLLDAPCSGLGVLSKRADLR 427
+ + E + I + DNS D + S+ A
Sbjct: 117 QNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNS--------YDF------IWSQDA--- 159
Query: 428 WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
+ + E ++KP GV+ + + ++ ++ L R
Sbjct: 160 ----FLHSPDKLKVFQECAR----VLKPRGVMAITDPMKEDGIDKSSIQPILDRI 206
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 38.1 bits (88), Expect = 0.004
Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 36/183 (19%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+ G ++ AA G +++ + G Y ++ + +R L A+ I +
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPL 130
Query: 391 HADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
AD R +V D + +D D +
Sbjct: 131 LADARFPQSYKSVVENVDVLYVDIAQPDQT------------------------DIAIYN 166
Query: 449 ASLLVKPGG--VLVYSTCSIDPEENEERV---EAFLLRHPEFSIDPADGLVPSDFVTKHG 503
A +K G +LV SID ++ + + E L + F L P + H
Sbjct: 167 AKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP--YDKDHA 224
Query: 504 FFF 506
Sbjct: 225 IVL 227
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.0 bits (88), Expect = 0.004
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
++++DC A L + + Y I+I+ +L+ ++ + +
Sbjct: 22 NLDKTVLDCGAGGDLPPLSIFVEDGYK--TYGIEISDLQLKKAENFSRENNFK--LNISK 77
Query: 392 ADLRT--FADNS 401
D+R F D S
Sbjct: 78 GDIRKLPFKDES 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.011
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 195 LRKLVLLKDNNSLPLPKLEGNDRAQARAL-ATI 226
L+KL SL KL +D A A A+ AT+
Sbjct: 22 LKKL-----QASL---KLYADDSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 0.78
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 12/33 (36%)
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGV 419
++ + A L+ +AD+S AP L +
Sbjct: 22 LKKLQASLKLYADDS----------AP--ALAI 42
Score = 29.1 bits (64), Expect = 2.0
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRAN 264
K L + ++KL ++S P+ +++A
Sbjct: 23 KKL--QASLKLYA-DDSAPALAIKAT 45
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 36.7 bits (84), Expect = 0.015
Identities = 14/83 (16%), Positives = 41/83 (49%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
L+K G + ++++++D PG ++++ + GG +L+++ + QG V + ++ K
Sbjct: 81 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 140
Query: 369 GRLRILNETAKLHQVNSVIRTIH 391
+ + K + + + +
Sbjct: 141 DHHDLAKKNYKHWRDSWKLSHVE 163
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 36.3 bits (84), Expect = 0.015
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 26/159 (16%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
V I+D A G + ++ +D+++ L I +
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFRG--- 90
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
N ++ I AD + K D V+ S L + LED ++ ++ +
Sbjct: 91 NLKVKYIEADYSKYDFEE--KYDMVV-----SALS-------IHH---LEDEDKKELYKR 133
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
+ ++K G+ + + E + + R
Sbjct: 134 -----SYSILKESGIFINADLVHGETAFIENLNKTIWRQ 167
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 36.0 bits (84), Expect = 0.016
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 332 QPGQSIVDCCAAPGG------KTLYM--ASCLSGQGLVYAIDIN 367
+PG ++DC AAPG + + S G V +D+
Sbjct: 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLL 64
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 150
Score = 35.0 bits (81), Expect = 0.019
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 26/93 (27%)
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPG-----------------GKTL-YMASCLS 356
A+ + L+V Q + C K ++AS S
Sbjct: 2 SALIQTPSSLLV-----QTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSS 56
Query: 357 GQGLVYAIDINKGRLRILNETAKLH---QVNSV 386
+G++Y ++K R IL + + +V
Sbjct: 57 SKGVLYGESVDKKRNIILESSDSRRPFLSIMNV 89
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 35.9 bits (83), Expect = 0.020
Identities = 21/157 (13%), Positives = 39/157 (24%), Gaps = 27/157 (17%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+D G T + + +A+D+++ L + + R
Sbjct: 36 LVFDDYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENKFRSQGLK--PRLA 89
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450
D+ N D + + DL+ + A S
Sbjct: 90 CQDISNLNINRKF--DLIT--CCLDSTNYIIDSDDLK----------------KYFKAVS 129
Query: 451 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 487
+K GGV ++ S F E
Sbjct: 130 NHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFY 166
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 35.6 bits (83), Expect = 0.021
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 44/143 (30%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ G ++++ ++PGG T + S + +ID L E ++ V I
Sbjct: 24 RKGDAVIEIGSSPGGWTQVLNSLA---RKIISID--------LQEMEEIAGVR----FIR 68
Query: 392 ADLRT----------FADNSTVKCDKVLLD-AP-CSGLGVLSKRADLRWNRRLEDMEELK 439
D+ + K D V+ D SG + +
Sbjct: 69 CDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSG---------------IPSRDHAV 113
Query: 440 ILQ--DELLDAASLLVKPGGVLV 460
Q +++ A ++ GG ++
Sbjct: 114 SYQIGQRVMEIAVRYLRNGGNVL 136
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 35.3 bits (82), Expect = 0.029
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 40/155 (25%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
T+++A LS G V ++ ++ I + +N + L+ +
Sbjct: 73 TIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYE 132
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY-- 461
D + +DA D K + A L +PG V++
Sbjct: 133 PFDFIFIDA---------------------D----KQNNPAYFEWALKLSRPGTVIIGDN 167
Query: 462 ---STCSIDPEENEERVEA------FLLRHPEFSI 487
ID N+ RV+ + P S
Sbjct: 168 VVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSA 202
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 35.5 bits (82), Expect = 0.029
Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 43/194 (22%)
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375
+ + ++ +++PQPG+ I+D G T +A V D +
Sbjct: 40 SFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIA---QSGAEVLGTDNAATMI---- 92
Query: 376 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM 435
E A+ + + + AD R F + + DA V S A L W +++
Sbjct: 93 EKARQNYPH--LHFDVADARNFRVDKPL-------DA------VFS-NAMLHW---VKE- 132
Query: 436 EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP 495
+ + + +K GG V + +EA I L P
Sbjct: 133 ------PEAAIASIHQALKSGGRFVAEF--GGKGNIKYILEALYNALETLGIHNPQALNP 184
Query: 496 SDFVTKHGFFFSDP 509
++F
Sbjct: 185 --------WYFPSI 190
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC,
immune system; HET: NAG; 2.40A {Mus musculus} SCOP:
b.1.1.1 PDB: 3b9k_B*
Length = 115
Score = 33.7 bits (78), Expect = 0.032
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 28/92 (30%)
Query: 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPG-----------------GKTL-YMASCLSGQ 358
+ + L+V Q + C K ++AS S +
Sbjct: 1 LIQTPSSLLV-----QTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSK 55
Query: 359 GLVYAIDINKGRLRILNETAK----LHQVNSV 386
G++Y ++K R IL + L + +V
Sbjct: 56 GVLYGESVDKKRNIILESSDSRRPFL-SIMNV 86
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 35.3 bits (81), Expect = 0.033
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+ ++D GG + + G V +DI++ +R E AK + N + I
Sbjct: 37 KKRGKVLDLACGVGGFSFLLED----YGFEVVGVDISEDMIRKAREYAKSRESN--VEFI 90
Query: 391 HADLR--TFADNS 401
D R +F D +
Sbjct: 91 VGDARKLSFEDKT 103
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 35.2 bits (81), Expect = 0.034
Identities = 5/63 (7%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ I D + + + A ++ G + + + + I
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 392 ADL 394
+
Sbjct: 79 GNG 81
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 34.8 bits (80), Expect = 0.043
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQV 383
V+ V +D G +LY+A+ G V A D N + + + +
Sbjct: 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANVERIKSIENL 79
Query: 384 NSVIRTIHADLRTF 397
++ + T DL
Sbjct: 80 DN-LHTRVVDLNNL 92
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 34.9 bits (80), Expect = 0.052
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 24/95 (25%)
Query: 332 QPGQSIVDCCAAPGGKTLYMAS---CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ ++D GG Y A+ +G D H+ ++
Sbjct: 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD--------------GHEKPMNVQ 118
Query: 389 TIHADLRTFADNSTV------KCDKVLLD-APCSG 416
++ ++ TF D + + KCD +L D S
Sbjct: 119 SLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSS 153
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 35.0 bits (80), Expect = 0.052
Identities = 17/153 (11%), Positives = 40/153 (26%), Gaps = 19/153 (12%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRT 389
+ +VD PG TL MA L + D++ ++ + +
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 449
+ F DK +D + W ++ +A
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVEC-------AHWFDF-----------EKFQRSA 135
Query: 450 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
++ G + + + + ++
Sbjct: 136 YANLRKDGTIAIWGYADPIFPDYPEFDDLMIEV 168
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 34.5 bits (79), Expect = 0.054
Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 29/165 (17%)
Query: 325 VVAVVDPQPGQSIVDC-CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
VVAV+ + ++D C G L + + +D++ L + K+ ++
Sbjct: 21 VVAVLKSVNAKKVIDLGCG--EGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRL 78
Query: 384 ----NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 439
I + L + D D + +E ++E +
Sbjct: 79 PEMQRKRISLFQSSL-VYRDKRFSGYDAAT----VIEV--------------IEHLDENR 119
Query: 440 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 484
+ +P V+V ST + + + + LRH +
Sbjct: 120 L--QAFEKVLFEFTRPQTVIV-STPNKEYNFHYGNLFEGNLRHRD 161
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 34.0 bits (78), Expect = 0.090
Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 28/187 (14%)
Query: 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377
+E + V+ +PG I+D + G A ID++
Sbjct: 21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT--GTGIDMSSLFTAQAKRR 78
Query: 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE 437
A+ V+ + IH D + N KCD C G
Sbjct: 79 AEELGVSERVHFIHNDAAGYVANE--KCDVAA----CVG------------------ATW 114
Query: 438 LKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD 497
+ + + +KPGG+++ E + GLV +
Sbjct: 115 IAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGA- 173
Query: 498 FVTKHGF 504
G+
Sbjct: 174 -FDDLGY 179
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 33.7 bits (77), Expect = 0.091
Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 34/160 (21%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQV 383
++ V + ++++ G + + L G VY I+ ++ I E
Sbjct: 37 ILEDVVNKSFGNVLEFGVGTG----NLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKE-- 90
Query: 384 NSVIRTIHADLRTF-ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
D +F S +D ++S L D E +
Sbjct: 91 ---FSITEGDFLSFEVPTS--------IDT------IVS-TYAFHH---LTDDE-----K 124
Query: 443 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
+ + S L+ GG +V++ ++ ++ +
Sbjct: 125 NVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQR 164
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 33.3 bits (76), Expect = 0.11
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
G ++D + +++ + A ++ G + + H + S I
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
A+ ++ + D + C G L +L+ ++ L +LQ
Sbjct: 79 ANG----LSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTL-VLQ 124
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 33.4 bits (76), Expect = 0.13
Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 32/179 (17%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+ + ++ AA G T+ + + +G++YA++ + L E + + N I +
Sbjct: 55 LRGDERVLYLGAASGT-TVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNN--IIPL 110
Query: 391 HADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
D S + K D + D + L
Sbjct: 111 LFDASKPWKYSGIVEKVDLIYQDIAQKNQI------------------------EILKAN 146
Query: 449 ASLLVKPGGVLVYS--TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 505
A +K G +V SID E V +L+ E + H F
Sbjct: 147 AEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFI 205
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 33.4 bits (77), Expect = 0.14
Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 42/155 (27%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
T++MA L G + ++ + ++ E +L V+ + L + +
Sbjct: 78 TIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF 137
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY-- 461
D + +D AD K L A +PG +++
Sbjct: 138 --DLIFID------------AD-------------KPNNPHYLRWALRYSRPGTLIIGDN 170
Query: 462 ---STCSIDPEENEERVEA------FLLRHPEFSI 487
++P+ +ERV+ + P +
Sbjct: 171 VVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTA 205
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 33.6 bits (77), Expect = 0.15
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 23/139 (16%)
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIH 391
+++ G +L A+ V +D +K + E L + IR I
Sbjct: 153 RPLKVLNLFGYTGVASLVAAA---AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 209
Query: 392 ADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELL 446
D F + D +L D P G E ++ +L
Sbjct: 210 EDAMKFIQREERRGSTYDIILTDPPKFGR---GTH-----------GEVWQLFDHLPLML 255
Query: 447 DAASLLVKPGGVLVYSTCS 465
D ++ P + + T
Sbjct: 256 DICREILSPKALGLVLTAY 274
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 32.9 bits (75), Expect = 0.17
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTI 390
G ++D + L + GQ A ++ +G + + + H + I+
Sbjct: 14 SQGAILLDVGS--DHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVR 71
Query: 391 HADL 394
A+
Sbjct: 72 LANG 75
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 32.7 bits (75), Expect = 0.18
Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 38/140 (27%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHAD----LRTFADNST 402
LY+ + L+ + ID R + + S +R + + + A++
Sbjct: 71 GLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAND-- 128
Query: 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY- 461
V +LK L D L++ GG LV
Sbjct: 129 -SYQLVFGQV---------------------SPMDLKALVDAAWP----LLRRGGALVLA 162
Query: 462 ----STCSIDPEENEERVEA 477
D + +A
Sbjct: 163 DALLDGTIADQTRKDRDTQA 182
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 33.0 bits (75), Expect = 0.18
Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 32/162 (19%)
Query: 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILN 375
+ + + + +++ + G T +++ G V A+D + +
Sbjct: 30 MDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLS----GLADRVTALDGSAEMIAE-- 83
Query: 376 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM 435
A H +++V DL V L
Sbjct: 84 --AGRHGLDNV-EFRQQDLFD-------------WTPDRQWDAVFF-AHWLAHVPDDR-- 124
Query: 436 EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 477
+ ++ V PGGV+ + + E++ ++
Sbjct: 125 ------FEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS 160
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 33.2 bits (75), Expect = 0.19
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDI 366
G VD A PGG T L + + VY++D
Sbjct: 209 LANGMWAVDLGACPGGWTY----QLVKRNMWVYSVDN 241
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 32.8 bits (75), Expect = 0.23
Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 31/170 (18%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+++ ++ ++D + GG +Y+ + IDI + + NE N
Sbjct: 47 ILSDIELNENSKVLDIGSGLGGGCMYINEKYGAH--THGIDICSNIVNMANERVSG---N 101
Query: 385 SVIRTIHADLR--TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
+ I D+ F +N+ D + L + +K
Sbjct: 102 NKIIFEANDILTKEFPENN---FDLIYSRDAILALSLENKNK------------------ 140
Query: 443 DELLDAASLLVKPGGVLVYST-CSIDPEENEERVEAFLLRHPEFSIDPAD 491
L +KP G L+ + C+ + E ++ + ++ + I +
Sbjct: 141 --LFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEE 188
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 32.8 bits (74), Expect = 0.24
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 12/138 (8%)
Query: 320 ESAGLVVAV-VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL------VYAIDINKGRLR 372
+ AV + +VD A G +AS + + V A ++ G R
Sbjct: 74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLAR 132
Query: 373 ILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR- 431
+ + ++ IHA T + T + V LD K A ++ R
Sbjct: 133 GYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPH---KQKSALVKKEMRV 189
Query: 432 LEDMEELKILQDELLDAA 449
+ + + D LL+ A
Sbjct: 190 FQSLVGPDLDADGLLEPA 207
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 32.2 bits (74), Expect = 0.25
Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 44/165 (26%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
+ M L G + D+++ + E + ++ I + L
Sbjct: 79 AIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQA 138
Query: 404 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY- 461
D + +DA D + +E L L++ GG++
Sbjct: 139 WQYDLIYIDA---------------------DKANTDLYYEESLK----LLREGGLIAVD 173
Query: 462 ----STCSIDPEENEERVEA------FLLRHP--EFSIDP-ADGL 493
D E E + + + + + P DGL
Sbjct: 174 NVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGL 218
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 32.5 bits (73), Expect = 0.32
Identities = 17/86 (19%), Positives = 27/86 (31%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ D +A G + + S YA DI+ + I+ E KL+ + IH
Sbjct: 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIH 110
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGL 417
F +D G
Sbjct: 111 GMEANFFLRKEWGFGFDYVDLDPFGT 136
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 31.9 bits (73), Expect = 0.34
Identities = 26/165 (15%), Positives = 45/165 (27%), Gaps = 44/165 (26%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
L MA L G + A D + I + + V I L +
Sbjct: 87 ALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPL 146
Query: 404 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY- 461
D + +D AD K + L++ GG++V
Sbjct: 147 PEFDLIFID------------AD-------------KRNYPRYYEIGLNLLRRGGLMVID 181
Query: 462 ----STCSIDPEENEERVEA------FLLRHP--EFSIDP-ADGL 493
+ + E + + L + S+ P DG+
Sbjct: 182 NVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGM 226
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 32.1 bits (74), Expect = 0.42
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID-----INKGRLRILNETAK 379
V+ + P+ + I+DC GG + + G + ID + ++ + +
Sbjct: 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDR 76
Query: 380 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS 421
+ R L K D +L+D LGV +
Sbjct: 77 VSLFKVSYREADFLL---KTLGIEKVDGILMD-----LGVST 110
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.5 bits (72), Expect = 0.46
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 44/165 (26%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
L M+ L G V DIN+G + + + + I+ L + +
Sbjct: 75 ALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGE 134
Query: 404 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY- 461
D + +D AD K + A LV P G++
Sbjct: 135 HQFDFIFID------------AD-------------KTNYLNYYELALKLVTPKGLIAID 169
Query: 462 ----STCSIDPEENEERVEA------FLLRHP--EFSIDP-ADGL 493
IDP + + + S+ ADG+
Sbjct: 170 NIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGM 214
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 31.8 bits (73), Expect = 0.56
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 479 LLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS-----LDGAFAARLVRAF 526
+ P S++P V SDP H+ + F +LV +
Sbjct: 54 FAKLPIMSVEPGWADAGPWAVASDTALGSDPPHHTVLRRQTNKWFTPKLVDGW 106
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 31.1 bits (71), Expect = 0.66
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 28/119 (23%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
+ MA L + ++IN I + + + ++ + V
Sbjct: 73 AVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV 132
Query: 404 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461
D V LD K L LE L++ G VL+
Sbjct: 133 DTLDMVFLDH--------WKDRYLPDTLLLEKCG---------------LLRKGTVLLA 168
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 31.7 bits (71), Expect = 0.66
Identities = 24/188 (12%), Positives = 46/188 (24%), Gaps = 32/188 (17%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+ + ++VD G + + + +DI+ L + +
Sbjct: 713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772
Query: 385 SVIRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 440
A L D+ D +E+ + +
Sbjct: 773 EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVI---------------EHMEEDQACEF 817
Query: 441 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV- 499
+ L P ++V ST P N E PE + F
Sbjct: 818 GE-----KVLSLFHPKLLIV-ST----P--NYEFNTILQRSTPETQEENNSEPQLPKFRN 865
Query: 500 TKHGFFFS 507
H F ++
Sbjct: 866 HDHKFEWT 873
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 31.2 bits (71), Expect = 0.78
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 318 QDESAGLVVAVVDPQPGQ----SIVDCCAAP------GGKTLYMASCLSGQGLVYAIDIN 367
+ S G+ +D ++ P LY +G + A I+
Sbjct: 12 KKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQID 71
Query: 368 KGRLRILNETA 378
LN
Sbjct: 72 GQTAHKLNTVV 82
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 30.9 bits (70), Expect = 0.81
Identities = 23/142 (16%), Positives = 37/142 (26%), Gaps = 35/142 (24%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN-----KGRLRILNETAKLHQVNSV 386
Q I+D G +L +AS V IDIN +
Sbjct: 29 QEDDEILDIGCGSGKISLELAS-KGYS--VTGIDINSEAIRLAETA-ARSPGLNQKTGGK 84
Query: 387 IRTIHADLRT--FADNSTVKCDKVLLDAPCS-GLGVLSKRADLRWNRRLEDMEELKILQD 443
+ + F D+S D + L + D +E
Sbjct: 85 AEFKVENASSLSFHDSS---FDFAV----MQAFL------------TSVPDPKER----S 121
Query: 444 ELLDAASLLVKPGGVLVYSTCS 465
++ ++KPG L
Sbjct: 122 RIIKEVFRVLKPGAYLYLVEFG 143
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 31.0 bits (70), Expect = 0.85
Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 31/156 (19%)
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
S++D G L+ V ++++ L I H
Sbjct: 50 KAASLLDVACGTG----MHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHH 99
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
D+R F+ V S +G L+ +A+L L+ +
Sbjct: 100 GDMRDFSLGRRF--SAVT--CMFSSIGHLAGQAELD----------------AALERFAA 139
Query: 452 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 487
V P GV+V V A + ++
Sbjct: 140 HVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTV 175
>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody,
immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A
2uzi_H*
Length = 146
Score = 29.9 bits (68), Expect = 0.86
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 25/91 (27%)
Query: 315 CAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQ 358
VQ ES G ++ +PG S+ CAA G GK L S +S
Sbjct: 2 AQVQLVESGGGLI-----KPGGSLRLSCAASGVRLSAYDMAWVRQAPGKGLEWVSAISSS 56
Query: 359 G-LVYAIDINKGRLRILNETAK--LH-QVNS 385
G Y D KGR I + +K ++ Q+NS
Sbjct: 57 GGSTYYADSVKGRFTISRDNSKNTVYLQMNS 87
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 30.8 bits (70), Expect = 0.89
Identities = 25/165 (15%), Positives = 43/165 (26%), Gaps = 44/165 (26%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
L +A L G V +++ + + + I L
Sbjct: 84 ALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA 143
Query: 404 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY- 461
D ++D AD K + L++PGG+L
Sbjct: 144 GTFDVAVVD------------AD-------------KENCSAYYERCLQLLRPGGILAVL 178
Query: 462 ----STCSIDPEENEERVEA------FLLRHP--EFSIDP-ADGL 493
+ P + + E + R S+ P DGL
Sbjct: 179 RVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGL 223
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 30.7 bits (69), Expect = 1.1
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 33/141 (23%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+ ++ ++++D G +Y A G V ID+++ L AK +
Sbjct: 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTE----AKRKTTS 89
Query: 385 SVIRTIHADLRT--FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
V+ + ++ + V S L L +
Sbjct: 90 PVVCYEQKAIEDIAIEPDA---YNVV-----LSSLA-------------LHYIASF---- 124
Query: 443 DELLDAASLLVKPGGVLVYST 463
D++ + +K G ++S
Sbjct: 125 DDICKKVYINLKSSGSFIFSV 145
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 30.7 bits (70), Expect = 1.2
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 479 LLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHS-----LDGAFAARLVRA 525
+L P FS D + P ++ H SDP +H+ + F R V
Sbjct: 84 VLADPRFSKDWRNSTTPLTEAEAALNHNMLESDPPRHTRLRKLVAREFTMRRVEL 138
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 30.7 bits (69), Expect = 1.2
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 39/139 (28%)
Query: 332 QPGQSIVDCCAAPGGKTLYMAS---CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ ++D GG + Y A+ +S +G I+ H+ ++
Sbjct: 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE--------------GHEKPIHMQ 125
Query: 389 TIHADLRTFADNSTV------KCDKVLLD-APCSGLGVLSKRADLRWNRRLEDMEELKIL 441
T+ ++ F D S V D +L D S N +E +K+L
Sbjct: 126 TLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESSS------------NPLVERDRTMKVL 173
Query: 442 QDELLDAASLLVKPGGVLV 460
+ V V
Sbjct: 174 E---NFERWKHVNTENFCV 189
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 29.8 bits (68), Expect = 1.4
Identities = 12/115 (10%), Positives = 31/115 (26%), Gaps = 28/115 (24%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD-LRTFADNSTVKCD 406
+ + A +S V ID ++ + + + + D L A + D
Sbjct: 71 SWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDI--D 128
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 461
+ +D ++L+ + + +L+
Sbjct: 129 ILFMDCD-------------------------VFNGADVLERMNRCLAKNALLIA 158
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 30.6 bits (68), Expect = 1.5
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 28 STRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKG 87
K R + + ++ + S+++Q + S + R Q +K +
Sbjct: 322 PKLKKRERRAAEPGSQETSSQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQN 381
Query: 88 SGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
+ D+ E + G R LD R+V DI ++++ +L +C +E
Sbjct: 382 NRDDNDDDDEESGGGREPILD----RIVRDIRQRVKDYKKFWSNLPHSVCSNEDI 432
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 29.9 bits (67), Expect = 1.6
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKL 380
+ AV ++ G +A L +G A+D + L + K+
Sbjct: 28 TAMASAVHPKGEEPVFLELGVGTG----RIALPLIARGYRYIALDADAAMLEVF--RQKI 81
Query: 381 HQVNSVIRTIHADLRT--FADNS 401
V+ ++ + AD R D S
Sbjct: 82 AGVDRKVQVVQADARAIPLPDES 104
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 29.5 bits (67), Expect = 1.9
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
+ + ++ +VD GG T+ +A VYAID G + + + +
Sbjct: 26 VSIGKLNLNKDDVVVDVGCGSGGMTVEIA-KRCKF--VYAIDYLDGAIEVTKQNLAKFNI 82
Query: 384 NSVIRTIHAD 393
+ + I
Sbjct: 83 KNC-QIIKGR 91
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 29.6 bits (67), Expect = 2.3
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
+L AS L G + D+++ + + K + + + I
Sbjct: 75 SLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGS 120
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 29.3 bits (66), Expect = 2.4
Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 31/156 (19%)
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
S++D G + + +++++ L + +L
Sbjct: 40 EASSLLDVACGTGTHLEHFTK----EFGDTAGLELSEDMLTHARK--RLPDA----TLHQ 89
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
D+R F V+ + S +G L +L + + +
Sbjct: 90 GDMRDFRLGRKF--SAVV--SMFSSVGYLKTTEELG----------------AAVASFAE 129
Query: 452 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 487
++PGGV+V + V A ++R ++
Sbjct: 130 HLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTV 165
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 29.6 bits (67), Expect = 2.4
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 25/99 (25%)
Query: 308 GLLKEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPG---------------GKTL-Y 350
G G VQ ES G +V QPG S+ CAA G GK L +
Sbjct: 127 GRSGGGGSEVQLVESGGGLV-----QPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEW 181
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAK--LH-QVNSV 386
+A G Y D KGR I +T+K + Q+NS+
Sbjct: 182 VAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSL 220
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta
sheet, four helix bundle, transferase; HET: YCM; 1.74A
{Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Length = 349
Score = 29.8 bits (66), Expect = 2.5
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 265 SRKGVTRADLVMQLNLLKVPHELSLHLDEFIR-VKTGLQNVIQAGLLK---EGLCAVQDE 320
+ +G + ADLV+ L L + EFI+ ++ L+ + K E ++
Sbjct: 68 TLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRREN 127
Query: 321 SAGLVVAVVDPQPGQSI-VD 339
L + PQ Q + D
Sbjct: 128 PRALSFVLSSPQLQQEVEFD 147
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 29.2 bits (66), Expect = 3.0
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADNSTV 403
L A + G + AID ++ I + V I I +D L
Sbjct: 85 LLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQES 144
Query: 404 KC--DKVLLDA 412
+ D +DA
Sbjct: 145 EGSYDFGFVDA 155
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 29.0 bits (65), Expect = 3.6
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 23/156 (14%)
Query: 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367
G L L ++ + D +PG ++D G L AS L VYA D++
Sbjct: 185 GSLTPVLAQA-------LLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLD 237
Query: 368 KGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLR 427
+ RL + E A ++ IR + AD R + D++L + P
Sbjct: 238 EKRLGLAREAALASGLSW-IRFLRADARHLPR-FFPEVDRILANPP-------------- 281
Query: 428 WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 463
RL E L L + L A L+ PGG + T
Sbjct: 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 28.9 bits (65), Expect = 4.1
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
L A + G + A+DINK + K V+ I
Sbjct: 94 LLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP 139
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 28.9 bits (64), Expect = 4.2
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 20/108 (18%)
Query: 429 NRRLEDMEELKILQDELLDAASL----------------LVKPGGVLVYSTCSI--DPEE 470
N+R+ E + L+ + L A + +VKP G + DPE+
Sbjct: 91 NKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPED 150
Query: 471 NEERVEAFLLRHPEFSIDPA--DGLVPSDFVTKHGFFFSDPIKHSLDG 516
+ E FL + + V V H F+ + L
Sbjct: 151 FWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMS 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 28.9 bits (65), Expect = 4.3
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 326 VAVVDPQ----------PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN-KGR 370
+ V P P + + P KT+++ V+ + G+
Sbjct: 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFV--TEHENNAVWKFEWQRNGK 302
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 28.3 bits (64), Expect = 4.5
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 354 CLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412
+S G ++ N+ I+ + + + + + + D T + D V LD
Sbjct: 49 AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108
Query: 413 P 413
P
Sbjct: 109 P 109
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta
barrel, TRPF, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
c.1.2.4
Length = 203
Score = 28.3 bits (64), Expect = 5.3
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLED 434
+ + VI+ + + + +LLD G G + W + L
Sbjct: 91 EAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSG---EAYPRAWAKPLLA 144
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 28.9 bits (65), Expect = 5.5
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAPC-SGLGVLSKRADLRWNRRLEDMEELKILQD--E 444
R I AD + + + D + +D P S SKR + + + +D
Sbjct: 593 RLIQADCLAWLREANEQFDLIFIDPPTFSN----SKRME----------DAFDVQRDHLA 638
Query: 445 LLDAASLLVKPGGVLVYST 463
L+ L++ GG +++S
Sbjct: 639 LMKDLKRLLRAGGTIMFSN 657
>3e98_A GAF domain of unknown function; structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas
aeruginosa}
Length = 252
Score = 28.3 bits (62), Expect = 5.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 462 STCSIDPEENEERVEAFLLRHPEFSIDPAD 491
+ + E+V A+L +HPEF ++ +
Sbjct: 23 KSQEPTAALDAEQVAAYLSQHPEFFVEHDE 52
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 28.5 bits (64), Expect = 5.8
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
P + Y + L+ V+ + G + +
Sbjct: 187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 221
Score = 28.1 bits (63), Expect = 8.0
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
+P + LY+ + L Y I + G L E+A
Sbjct: 44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 27.9 bits (62), Expect = 6.6
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 435 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV 494
+E + L + GG L + + + V+ ++ H +
Sbjct: 113 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHN-------SAVT 165
Query: 495 PSDFVTKHGFFFS 507
++F H ++
Sbjct: 166 EAEFAHGHRCTYA 178
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 28.5 bits (63), Expect = 6.9
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 1 MSMAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRR 49
A + LP ++ + A + S R P +I + +
Sbjct: 313 RDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPV 361
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 28.5 bits (64), Expect = 7.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGG 346
++ ++ PQP + + D A G
Sbjct: 160 TIIHLLKPQPREVVQDPAAGTAG 182
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 27.9 bits (63), Expect = 8.3
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 361 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
V+A D++ + I + A+ H V+ + +
Sbjct: 149 VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIE 194
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 28.3 bits (63), Expect = 8.4
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 25/81 (30%)
Query: 465 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK-HSLDGA------ 517
D ++ E ++ L P+D + F ++ + H + G
Sbjct: 774 RSDRKDIYEILKK-LENEVLKDSK-----NPNDIRAVYLPFTNNLRRFHDISGKGYKLIA 827
Query: 518 ------------FAARLVRAF 526
A +L F
Sbjct: 828 EVITKTDKFNPMVATQLCEPF 848
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 28.0 bits (63), Expect = 9.7
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 14/62 (22%)
Query: 479 LLRHPEFSIDPADGLVPSDF---------VTKHGFFFSDPIKHS-----LDGAFAARLVR 524
+ R F++ + +++ + K+G F P H+ ++ +F +R +
Sbjct: 61 VFRDERFAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPEDHARVRKLVNPSFTSRAID 120
Query: 525 AF 526
Sbjct: 121 LL 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.397
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,110,292
Number of extensions: 511742
Number of successful extensions: 1428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1365
Number of HSP's successfully gapped: 145
Length of query: 526
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 428
Effective length of database: 3,965,535
Effective search space: 1697248980
Effective search space used: 1697248980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)