RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009769
(526 letters)
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 154 bits (390), Expect = 7e-44
Identities = 89/296 (30%), Positives = 139/296 (46%), Gaps = 12/296 (4%)
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP W+++R K E+ ++ NN P LR N +R + L+ +
Sbjct: 1 HPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLDEAGMKGFPH 58
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ +R++T V ++G VQD SA + + PQ G+ I+D CAAPGGKT
Sbjct: 59 ADYPDAVRLETP-APVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT 117
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++ V A+DI++ RL + + K + + D++
Sbjct: 118 THILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRI 175
Query: 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 468
LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LVY+TCS+ P
Sbjct: 176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235
Query: 469 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 524
EEN +++AFL R + + + + P DG F A+L++
Sbjct: 236 EENSLQIKAFLQRTADAELCETG-------TPEQPGKQNLPGAEEGDGFFYAKLIK 284
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 148 bits (373), Expect = 3e-41
Identities = 89/307 (28%), Positives = 145/307 (47%), Gaps = 15/307 (4%)
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
+ R+ + G E AI++ R N+ K ++ DLV +LN +
Sbjct: 12 LGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLNKKGFQFK 69
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
E + ++ GL +Q+ S+ +DP+PG+ + D AAPGG
Sbjct: 70 RVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT Y+A + G++YA D+++ RLR V +VI + L N + D
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV--EFD 187
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 466
K+LLDAPC+G G + K + +WNR ++D++ + LQ LL+ ++KPGG+LVYSTCS+
Sbjct: 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247
Query: 467 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD---------PIKHSLDGA 517
+PEENE ++ L + + + P P+ G S+ P H G
Sbjct: 248 EPEENEFVIQWA-LDNFDVELLPLKYGEPA-LTNPFGIELSEEIKNARRLYPDVHETSGF 305
Query: 518 FAARLVR 524
F A++ +
Sbjct: 306 FIAKIRK 312
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 109 bits (271), Expect = 4e-27
Identities = 71/289 (24%), Positives = 113/289 (39%), Gaps = 27/289 (9%)
Query: 261 LRANSRKGVTRADLVMQLN------------------LLKVPHELSLHLDEFIRVKTGLQ 302
+R N+ K D+V L L + E +
Sbjct: 6 VRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ-T 63
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
++ + L + G +QD ++ L ++DP PG ++D CAAPG KT ++A+ L QG ++
Sbjct: 64 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 123
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVLLDAPCSGLGVLS 421
A D++ RL + V+ L +D + +LLD CSG G+ S
Sbjct: 124 AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS 183
Query: 422 KRADLRWNRRLEDMEELKILQDELLDAASLLVKP-GGVLVYSTCSIDPEENEERVEAFLL 480
++ + + + + L P LVYSTCS+ EENE+ V L
Sbjct: 184 RQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQ 243
Query: 481 RHP-EFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDGAFAARLVR 524
++P F + PA P S F + P G F A + R
Sbjct: 244 QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 292
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 140
Score = 75.5 bits (185), Expect = 6e-17
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 30 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLMA--RPMTGKQRTVHYLIMVGLYQLLYT 87
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
+PP+A + E V A RP L+NG+LR+ + L L + +D
Sbjct: 88 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQ--FQRQQEEL-LAEFNASD 136
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 73.8 bits (180), Expect = 6e-15
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 21/179 (11%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG ++D GG ++ ++G V ID + + E AKL+ V ++ I
Sbjct: 144 QPGDRVLDVFTYTGGFAIHA--AIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV 201
Query: 392 ADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
K D V+LD P + +D++ + A
Sbjct: 202 GSAFEEMEKLQKKGEKFDIVVLDPPAFV-------------QHEKDLKAGLRAYFNVNFA 248
Query: 449 ASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSIDPADGLVPSDFVTKHGF 504
LVK GG+LV +CS +D + ++ + A + D
Sbjct: 249 GLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMAS 307
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 131
Score = 69.4 bits (169), Expect = 7e-15
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 97 ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRI 156
R K R + G ++D LI T + + ILR+
Sbjct: 29 TRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRG-WTLDRLPAVDRAILRV 87
Query: 157 GFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
+E++ +P VVDE V+LAK + VNG+L +++
Sbjct: 88 SVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVM 131
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
maritima [TaxId: 2336]}
Length = 141
Score = 62.1 bits (150), Expect = 2e-12
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D + + G +D LI + + + +LR+ YE+
Sbjct: 34 ILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWS-LNRLSVVDRNVLRLATYEL 92
Query: 162 VKLDMPPYA-VVDENVRLAKVALRPGAGNLVNGILRKLV 199
+ P +DE + +AK +G VNGIL ++
Sbjct: 93 LFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli
[TaxId: 562]}
Length = 139
Score = 59.3 bits (143), Expect = 2e-11
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ D D+ +++ G YLD L+ + + + + +LRI YE+ K
Sbjct: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMK--PYLSRLLEELGQVEKAVLRIALYELSKR 95
Query: 165 -DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
D+P ++E + LAK + VNG+L K
Sbjct: 96 SDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 62.2 bits (150), Expect = 3e-11
Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 22/189 (11%)
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--S 385
++ G+ +D + GG L++A G V A+D + LR E A+L+ +
Sbjct: 140 YMERFRGERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVR 196
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 445
V+ DL + + D V+LD P G R E+
Sbjct: 197 VLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRA-------------YKEV 243
Query: 446 LDAASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSIDPADGLVPSDFVTKH 502
A L+K GG+L ++CS + V EA H + G P D
Sbjct: 244 NLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQ-PFDHPVLL 302
Query: 503 GFFFSDPIK 511
+ +K
Sbjct: 303 NHPETHYLK 311
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 53.3 bits (127), Expect = 2e-08
Identities = 16/155 (10%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIH 391
G+++++ + ++ A G ++D+ K + + + ++ + +
Sbjct: 144 AGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201
Query: 392 ADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
D+ + A + D +++D P + R +++ + +L+
Sbjct: 202 MDVFDYFKYARRHHLTYDIIIIDPPS-------------FARNKKEVFSVSKDYHKLIRQ 248
Query: 449 ASLLVKPGGVLVYSTCS--IDPEENEERVEAFLLR 481
++ G+++ ST + + + ++++E +
Sbjct: 249 GLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 283
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 52.0 bits (124), Expect = 3e-08
Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 31/180 (17%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+PG+S++ A G +++ + +G ++ I+ + LR L + + I
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450
+ K D + D L+D A
Sbjct: 131 ATKPEEYRAL-VPKVDVIFEDVAQPT------------------------QAKILIDNAE 165
Query: 451 LLVKPGGVLVYST--CSIDPEENEERVEAFL--LRHPEFSIDPADGLVPSDFVTKHGFFF 506
+ +K GG + + SID + E+V + F + L P + H F
Sbjct: 166 VYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEP--YEKDHALFV 223
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 50.4 bits (120), Expect = 2e-07
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 2/132 (1%)
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
EL + FI + +++ + + A ++ +PG I++ G
Sbjct: 40 ELIVSGKSFIVSDFSPMYFGR--VIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSG 97
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
+ Y+ L+G+G + ++ ++ L+ + +RT +D+ F +
Sbjct: 98 NMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDA 157
Query: 406 DKVLLDAPCSGL 417
+ P + +
Sbjct: 158 VIADIPDPWNHV 169
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 49.0 bits (116), Expect = 2e-07
Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 19/175 (10%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QV 383
V+ + P+ + I+DC GG + + G + ID++ LRI E K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDR 73
Query: 384 NSVIRTIHADLRTFADNSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 442
S+ + + + + K D +L+D S +L+
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGVS-------------TYQLKGENRELENL 120
Query: 443 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD 497
E L A L+ PGG +V + V+ + I + PS+
Sbjct: 121 KEFLKKAEDLLNPGGRIV---VISFHSLEDRIVKETFRNSKKLRILTEKPVRPSE 172
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 50.2 bits (119), Expect = 3e-07
Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 17/157 (10%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
L+K G + ++++++D PG ++++ + GG +L+++ + QG V + ++ K
Sbjct: 74 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 133
Query: 369 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRW 428
+ + K + + + + + DN + G L +
Sbjct: 134 DHHDLAKKNYKHWRDSWKLSHVEE----WPDNVDFIHKDI--------SGATEDIKSLTF 181
Query: 429 NRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTC 464
+ DM L +K GGV Y
Sbjct: 182 DAVALDMLN----PHVTLPVFYPHLKHGGVCAVYVVN 214
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 49.8 bits (118), Expect = 3e-07
Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 30/147 (20%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+P + +VD A G +L +A G+ V AI+ + + L E L++V + +
Sbjct: 106 KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN 163
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
D R F D++L+ E + A
Sbjct: 164 MDNRDF--PGENIADRILMGYVVR--------------------------THEFIPKALS 195
Query: 452 LVKPGGVLVYSTCSIDPEENEERVEAF 478
+ K G ++ Y + E E F
Sbjct: 196 IAKDGAIIHYHNTVPEKLMPREPFETF 222
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 45.9 bits (108), Expect = 3e-06
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 24/149 (16%)
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ + + ++ AA G ++A + +G++YA++ + L E + N +
Sbjct: 52 LKLRGDERVLYLGAASGTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPL 109
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
A K D + D + K +
Sbjct: 110 LFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFF-------------------- 149
Query: 449 ASLLVKPGGVLVYSTCSIDPEENEERVEA 477
L K V++ SID E V
Sbjct: 150 --LKEKGEVVIMVKARSIDSTAEPEEVFK 176
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 46.1 bits (109), Expect = 4e-06
Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 31/172 (18%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
+ G + + A +V D PG +++ A G TL + + G V + +
Sbjct: 72 SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA 131
Query: 369 GRLRIL--NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADL 426
N + Q R + +DL + D+ +LD
Sbjct: 132 DHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVLDMLA------PWEVLD 184
Query: 427 RWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCSIDPEENEERVEA 477
+R L GGVL+ Y E + A
Sbjct: 185 AVSRLL---------------------VAGGVLMVYVATVTQLSRIVEALRA 215
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 43.2 bits (101), Expect = 2e-05
Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+ ++ +PG VD G + G V +D + + + L +
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVAR-AKGLHLPGLT 65
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 444
V R A + D +L D LGV S D + +EL E
Sbjct: 66 VVQGNFRHLKRHLAALGVERVDGILAD-----LGVSSFHLD-------DPSDEL-NALKE 112
Query: 445 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD 497
L+ A+ ++ PGG LV + V+ F LR + LVPS+
Sbjct: 113 FLEQAAEVLAPGGRLVVIAF---HSLEDRVVKRF-LRESGLKVLTKKPLVPSE 161
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 43.2 bits (101), Expect = 3e-05
Identities = 15/105 (14%), Positives = 35/105 (33%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
+K V + + + ++D + G I+D G +A + G V+A + +
Sbjct: 79 NMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE 138
Query: 369 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
++ + + D+ D V + + P
Sbjct: 139 EFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 183
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 40.5 bits (94), Expect = 3e-04
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+ V+ + I+ A+ G ++A +VYAI+ +R L + +
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAERENII 125
Query: 386 VIRTIHADLRTFADNS 401
I + +A+
Sbjct: 126 PILGDANKPQEYANIV 141
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 39.2 bits (90), Expect = 6e-04
Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 23/182 (12%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ G S++D GG L G G Y +DI + + A+ + +
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
D + + D + D +
Sbjct: 81 QDSYGRHMDLGKEFDVI------------------SSQFSFHYAFSTSESLDIAQRNIAR 122
Query: 452 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPI 510
++PGG + + + ER + + + + I VP + V ++ F D +
Sbjct: 123 HLRPGGYFIMTVP--SRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 180
Query: 511 KH 512
+
Sbjct: 181 NN 182
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 38.8 bits (90), Expect = 8e-04
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMAS-----CLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+VD A G +AS + + V A ++ G R + +
Sbjct: 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE 145
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 445
++ IHA T + T + V LD + R + + + D L
Sbjct: 146 RLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKE--MRVFQSLVGPDLDADGL 203
Query: 446 LDAA 449
L+ A
Sbjct: 204 LEPA 207
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 36.7 bits (84), Expect = 0.002
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+PG ++VD AAPGG + Y+ + + G+G + A D+ ++ + + R
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----MDPIVGVDFLQGDFRDEL 75
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451
K V++ + R +E L++ +D L S
Sbjct: 76 VMKALLERVGDSKVQ-VVMSDMAPNMSGTPAVDIPRAMYLVELA--LEMCRDVLAPGGSF 132
Query: 452 LVK 454
+VK
Sbjct: 133 VVK 135
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 37.7 bits (87), Expect = 0.003
Identities = 39/306 (12%), Positives = 82/306 (26%), Gaps = 42/306 (13%)
Query: 161 IVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGI--LRKLVLLKDNNSLPLPKL----EG 214
KL ++ E ++ + + N + + KL+ LP P E
Sbjct: 61 TAKLQSILFSNYMEEYKVDF----KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKET 116
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+ S V Y + I+ + + + R+
Sbjct: 117 ILPDLNASFDN--SDTKGFVNAINLY---NKMIREIPRQRIID----HLETIDKIPRS-F 166
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ + + ++ K V LL L V + + G
Sbjct: 167 IHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGE-LLPNFLSDVYQQ--------CQLKKG 217
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ +D + G + A G L + +I + L R +
Sbjct: 218 DTFMDLGSGVGNCVVQAAL-ECGCALSFGCEIMDDASDL----TILQYEELKKRCKLYGM 272
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 454
R ++K V + + + D+ E+L +++L K
Sbjct: 273 RLNNVEFSLKKSFVDNNRVAELIP----QCDVILVNNFLFDEDLNKKVEKIL----QTAK 324
Query: 455 PGGVLV 460
G ++
Sbjct: 325 VGCKII 330
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 37.1 bits (85), Expect = 0.004
Identities = 40/262 (15%), Positives = 71/262 (27%), Gaps = 38/262 (14%)
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+ VW N+D F G+ R + + L L +
Sbjct: 52 WRPLVPDRVWQNADAIF-TGDTDEDGMGRWRFPKE----ALGETWPLSLLG-VEFLGRFT 105
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
G+ E + + L AV +++ G +L + V
Sbjct: 106 AFRHVGVFPEQIVHWEW----LKNAVETADRPLKVLNLFGYTGVASLV---AAAAGAEVT 158
Query: 363 AIDINKGRLRILNE-TAKLHQVNSVIRTIHADLRTF---ADNSTVKCDKVLLDAPCSGLG 418
+D +K + E + IR I D F + D +L D P G G
Sbjct: 159 HVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRG 218
Query: 419 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS---IDPEENEERV 475
++ +L +LD ++ P + + T E +
Sbjct: 219 ------------THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM 266
Query: 476 EAFL------LRHPEFSIDPAD 491
+ + E I A
Sbjct: 267 RETMRGAGGVVASGELVIREAG 288
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 36.0 bits (82), Expect = 0.005
Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 32/159 (20%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L++ + +P VD GG TL +A VYAID N + + H +
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
+ + D D ++ EL+ +
Sbjct: 81 GDNVTLMEGDAPEALCKIP-DIDIAVVG---------------------GSGGELQEILR 118
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
+ D +KPGG ++ + + E + L
Sbjct: 119 IIKD----KLKPGGRIIVTAILL---ETKFEAMECLRDL 150
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 35.3 bits (81), Expect = 0.011
Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 23/152 (15%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
P +VD GG + Y + + V + G + N V
Sbjct: 65 TPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLTKG-GPGHEEPIPMSTYGWNLVRLQSG 122
Query: 392 ADLRTFADNSTVKCDKVLLD-APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450
D+ +CD +L D S +E + L +L+
Sbjct: 123 VDVFFIPPE---RCDTLLCDIGESSPNP---------------TVEAGRTL--RVLNLVE 162
Query: 451 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 482
+ + E++EA +H
Sbjct: 163 NWLSNNTQFCVKVLNPYMSSVIEKMEALQRKH 194
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 35.0 bits (79), Expect = 0.014
Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 20/145 (13%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+A G +++ + + + I+ N G + L + A
Sbjct: 45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDE--HWIIECNDGVFQRLRDWAPRQTHK 102
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 444
+ + A +L +
Sbjct: 103 --VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQF----------------NF 144
Query: 445 LLDAASLLVKPGGVLVYSTCSIDPE 469
+ + A L+KPGGVL Y + E
Sbjct: 145 IKNHAFRLLKPGGVLTYCNLTSWGE 169
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 34.9 bits (79), Expect = 0.016
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 36/210 (17%)
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380
S GL++ + + ++D A G L + + +D K + + + A+
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE 60
Query: 381 HQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 440
V +V + ++ + R +R R
Sbjct: 61 KGVENVRFQQGTAESLPFPD----DSFDIITCRYAAHHFSDVRKAVREVAR--------- 107
Query: 441 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS---- 496
++K G + +D E+ V + H DP+ S
Sbjct: 108 -----------VLKQDGRFLL----VDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEW 152
Query: 497 -DFVTKHGFFFSDPIKHSLDGAFAARLVRA 525
+ + + D K +L + + + R
Sbjct: 153 QAMFSANQLAYQDIQKWNLPIQYDSWIKRG 182
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 33.0 bits (74), Expect = 0.056
Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 28/187 (14%)
Query: 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377
+E + V+ +PG I+D + G A ID++
Sbjct: 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT--GTGIDMSSLFTAQAKRR 75
Query: 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE 437
A+ V+ + IH D + N A C G
Sbjct: 76 AEELGVSERVHFIHNDAAGYVANEKCD------VAACVGA--------------TWIAGG 115
Query: 438 LKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD 497
++ L +KPGG+++ E + GLV
Sbjct: 116 FAGAEELLAQ----SLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLV--G 169
Query: 498 FVTKHGF 504
G+
Sbjct: 170 AFDDLGY 176
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 31.9 bits (71), Expect = 0.17
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 12/52 (23%)
Query: 326 VAVVDPQ----------PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367
+ V P P + + P KT+++ V+ +
Sbjct: 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE--HENNAVWKFEWQ 298
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 31.8 bits (71), Expect = 0.18
Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 14/145 (9%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQV 383
++ ++ ++D G ++ + +G V ++D + L+ + +
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVE----EGFSVTSVDASDKMLKYALKERWNRRK 103
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 443
+ + DA + L D + +
Sbjct: 104 EPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFA---------HLPDSKGDQSEHR 154
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDP 468
L + +V+PGG+LV + D
Sbjct: 155 LALKNIASMVRPGGLLVIDHRNYDY 179
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 31.0 bits (68), Expect = 0.32
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 2/78 (2%)
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 374
E ++ GK L A S VY I +G L
Sbjct: 256 VFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315
Query: 375 NETAKLHQVNSVIRTIHA 392
A V ++A
Sbjct: 316 GRYAVGQGPMWV--VVNA 331
>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 124
Score = 28.9 bits (64), Expect = 0.69
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 316 AVQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
AV+ +S LV +PG S+ C G Q
Sbjct: 1 AVKLQQSGPELV------RPGTSVKLSCKTSGYIFTSYWIHWLKQ 39
>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 1 [TaxId:
10090]}
Length = 109
Score = 28.1 bits (62), Expect = 0.88
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ ES GLV QP S+ CAA G A Q
Sbjct: 2 VQLQESGGGLV------QPRGSLKLSCAASGFTFNTDAMNWVRQ 39
>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 116
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 316 AVQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
AVQ ++S GLV +P Q++ C G Q
Sbjct: 1 AVQLEQSGPGLV------RPSQTLSLTCTVSGTSFDDYYWTWVRQ 39
>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 120
Score = 27.8 bits (61), Expect = 1.5
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ + AGL+ +P +++ CA GG Q
Sbjct: 2 VQLQQWGAGLL------KPSETLSLTCAVYGGSFSDYYWSWIRQ 39
>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
10090]}
Length = 118
Score = 27.4 bits (60), Expect = 2.2
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
V+ ES GLV QPG S+ CAA G Q
Sbjct: 2 VKLLESGGGLV------QPGGSLKLSCAASGFDFSKYWMSWVRQ 39
>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable
domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 117
Score = 26.9 bits (59), Expect = 2.6
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 23/74 (31%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQG 359
V+ ES GLV QP Q++ C G GK L + +S G
Sbjct: 2 VKLLESGPGLV------QPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGG 55
Query: 360 LVYAIDINKGRLRI 373
Y K RL I
Sbjct: 56 SPYYNSALKSRLSI 69
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 27.8 bits (60), Expect = 3.4
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 319 DESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
D V V+ G + + APGG+ Y + + ID+ G
Sbjct: 17 DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGET 68
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 27.4 bits (59), Expect = 3.8
Identities = 7/141 (4%), Positives = 28/141 (19%), Gaps = 12/141 (8%)
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389
+ PG ++ +++ V ++++ + +
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGD 73
Query: 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 449
+ + + A + + + +
Sbjct: 74 FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEA------- 126
Query: 450 SLLVKPGGVLVYSTCSIDPEE 470
L+ + T D
Sbjct: 127 --LMPQACSGLLITLEYDQAL 145
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 27.5 bits (60), Expect = 3.9
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 20/118 (16%)
Query: 268 GVTRADLVMQLN-------------LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 314
G + ++L+ L +L + ++ +
Sbjct: 5 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHA 64
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
A++ L G +D + G T A + G V ID K +
Sbjct: 65 YALELLFDQL-------HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVD 115
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2
{Pea seedling (Pisum sativum) [TaxId: 3888]}
Length = 108
Score = 26.3 bits (58), Expect = 4.1
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 173 DENVRLAKVA--LRPGAGN-----------LVNGILRKLVLLKDNNSLPLPKLEGND 216
++NVR ++ ++ N + + L K+V D + +P E +
Sbjct: 50 EKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTE 106
>d1ut1a_ b.2.3.6 (A:) DraA/Afimbrial adhesin Afa-III {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNN 205
+VAL+ N G K L+ DNN
Sbjct: 56 QVALKADTDNFEQG---KFFLISDNN 78
>d2plga1 d.198.1.2 (A:3-154) Uncharacterized protein Tll0839
{Synechococcus elongatus [TaxId: 32046]}
Length = 152
Score = 26.4 bits (58), Expect = 5.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 453 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 484
+ G V+ S EE+ + + +L P
Sbjct: 52 FRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPV 83
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.9 bits (58), Expect = 6.0
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 373
++ + + + ++D G A + V A D+ + L++
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKV 52
>d1utya_ b.147.1.1 (A:) Nonstructural protein NS2 {Bluetongue virus
[TaxId: 40051]}
Length = 153
Score = 26.3 bits (58), Expect = 6.1
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 67 RLMRIQFGGAFADLLNKKGKGSG--------DNEMGYVERTLGFRTKDLDDRDLR 113
R+Q+ G D K KG G D + + G + D R+LR
Sbjct: 97 MATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELR 151
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.8 bits (58), Expect = 6.6
Identities = 11/42 (26%), Positives = 12/42 (28%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
LV V IVD G L + L ID
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 59
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 26.1 bits (56), Expect = 8.2
Identities = 13/81 (16%), Positives = 21/81 (25%)
Query: 444 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG 503
L+ KPGG + P+ F + E +
Sbjct: 115 GLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKYNEDVGE 174
Query: 504 FFFSDPIKHSLDGAFAARLVR 524
+D + + FA L R
Sbjct: 175 LHRTDENGNRIKLRFATMLAR 195
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 25.5 bits (56), Expect = 9.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 173 DENVRLAKV--ALRPGAGN-----------LVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ RL KV L G GN +V+ +K+V +++ +P+P +
Sbjct: 52 KQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGR 111
Query: 220 ARA 222
R
Sbjct: 112 DRV 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.397
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,910,685
Number of extensions: 90584
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 54
Length of query: 526
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 437
Effective length of database: 1,185,626
Effective search space: 518118562
Effective search space used: 518118562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)