Query 009770
Match_columns 526
No_of_seqs 124 out of 133
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 17:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.14 3E-06 42.1 8.0 75 81-185 2-76 (78)
2 PF15418 DUF4625: Domain of un 92.4 2.2 4.7E-05 39.7 11.5 89 77-189 29-120 (132)
3 COG1470 Predicted membrane pro 89.7 5.6 0.00012 44.3 13.1 113 71-188 226-362 (513)
4 PF01229 Glyco_hydro_39: Glyco 87.7 1.5 3.2E-05 47.9 7.3 108 314-442 83-206 (486)
5 PF00150 Cellulase: Cellulase 82.5 10 0.00022 36.7 9.6 105 310-440 57-173 (281)
6 PF13731 WxL: WxL domain surfa 77.0 9.2 0.0002 37.4 7.4 79 106-185 105-210 (215)
7 PF06030 DUF916: Bacterial pro 75.7 64 0.0014 29.4 13.2 108 62-186 4-120 (121)
8 COG1470 Predicted membrane pro 69.8 26 0.00057 39.2 9.4 33 154-186 437-469 (513)
9 PF14352 DUF4402: Domain of un 67.8 5.8 0.00013 35.7 3.4 32 155-186 95-128 (130)
10 PF13204 DUF4038: Protein of u 67.7 8.3 0.00018 39.6 4.9 105 304-440 77-185 (289)
11 PF10003 DUF2244: Integral mem 67.6 4.7 0.0001 37.4 2.8 53 159-213 88-140 (140)
12 KOG1579 Homocysteine S-methylt 64.6 38 0.00083 36.1 9.0 161 296-488 78-244 (317)
13 cd00917 PG-PI_TP The phosphati 63.9 9.9 0.00021 34.2 4.1 33 153-186 77-109 (122)
14 PF01835 A2M_N: MG2 domain; I 62.9 37 0.0008 28.6 7.2 29 157-185 58-86 (99)
15 PF06280 DUF1034: Fn3-like dom 62.7 7.9 0.00017 33.9 3.2 39 151-189 62-103 (112)
16 PF02221 E1_DerP2_DerF2: ML do 58.6 20 0.00042 31.6 5.0 36 153-188 86-121 (134)
17 smart00633 Glyco_10 Glycosyl h 45.4 30 0.00065 34.5 4.4 97 314-440 15-126 (254)
18 smart00737 ML Domain involved 39.3 58 0.0013 28.4 4.8 34 154-187 73-106 (118)
19 PF12891 Glyco_hydro_44: Glyco 28.5 1E+02 0.0022 31.8 5.1 27 416-442 156-182 (239)
20 PF13304 AAA_21: AAA domain; P 28.5 46 0.001 29.8 2.5 38 403-440 259-297 (303)
21 TIGR01370 cysRS possible cyste 27.4 1.4E+02 0.003 31.8 6.1 56 380-436 143-210 (315)
22 COG2987 HutU Urocanate hydrata 27.1 34 0.00074 38.4 1.6 41 452-497 341-389 (561)
23 PF00868 Transglut_N: Transglu 23.9 91 0.002 28.2 3.5 31 155-185 87-117 (118)
24 PF08428 Rib: Rib/alpha-like r 23.4 2.5E+02 0.0054 23.0 5.6 31 153-186 19-49 (65)
25 PRK05414 urocanate hydratase; 21.2 56 0.0012 37.2 1.8 40 453-497 342-389 (556)
26 PF09099 Qn_am_d_aIII: Quinohe 21.1 98 0.0021 26.9 2.9 23 160-182 47-69 (81)
27 PF14734 DUF4469: Domain of un 20.9 99 0.0021 27.8 3.0 23 164-186 65-87 (102)
28 PLN02489 homocysteine S-methyl 20.5 4.7E+02 0.01 27.8 8.4 89 378-473 161-251 (335)
29 PF12245 Big_3_2: Bacterial Ig 20.3 3.4E+02 0.0074 21.7 5.7 28 161-189 9-36 (60)
30 PF05205 COMPASS-Shg1: COMPASS 20.1 1.1E+02 0.0025 27.2 3.3 38 387-424 1-38 (106)
No 1
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.04 E-value=0.14 Score=42.12 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=43.0
Q ss_pred ecCceEEEEEEEccCcccCCCCCCcceEEEEcccCCCCCCcccccCceEEEEeeecCCCCcccccCCCCcceeeecCCCe
Q 009770 81 ARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGET 160 (526)
Q Consensus 81 aRGErvSFQlVLrs~~~~~s~~~l~~V~V~vSDL~S~sG~~~i~g~~Itlr~V~yVLGyPD~LVP~d~p~~~v~V~agqt 160 (526)
-.||...+.+-+... ....+.+++++++ .++| |- +..+ +.....|++|++
T Consensus 2 ~~G~~~~~~~tv~N~----g~~~~~~v~~~l~---~P~G-------------------W~---~~~~-~~~~~~l~pG~s 51 (78)
T PF10633_consen 2 TPGETVTVTLTVTNT----GTAPLTNVSLSLS---LPEG-------------------WT---VSAS-PASVPSLPPGES 51 (78)
T ss_dssp -TTEEEEEEEEEE------SSS-BSS-EEEEE-----TT-------------------SE------E-EEEE--B-TTSE
T ss_pred CCCCEEEEEEEEEEC----CCCceeeEEEEEe---CCCC-------------------cc---ccCC-ccccccCCCCCE
Confidence 358888888888753 1234456666554 2333 11 0011 112237899999
Q ss_pred eEEEEEEEcCCCCCCceeEEEEEEE
Q 009770 161 TAVWVSIDAPYAQPPGLYEGEIIIT 185 (526)
Q Consensus 161 QpLWIdV~VP~dA~PG~Y~GtVtVt 185 (526)
+.+=++|.+|++++||.|..+++++
T Consensus 52 ~~~~~~V~vp~~a~~G~y~v~~~a~ 76 (78)
T PF10633_consen 52 VTVTFTVTVPADAAPGTYTVTVTAR 76 (78)
T ss_dssp EEEEEEEEE-TT--SEEEEEEEEEE
T ss_pred EEEEEEEECCCCCCCceEEEEEEEE
Confidence 9999999999999999999999886
No 2
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=92.40 E-value=2.2 Score=39.69 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=55.0
Q ss_pred EEEeecCceEEEEEEEccCcccCCCCCCcceEEEEcc-cCC-CCCCcccccCceEEEEeeecCCCCcccccCCCCcceee
Q 009770 77 NLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSD-LCS-ASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQIS 154 (526)
Q Consensus 77 ~LsAaRGErvSFQlVLrs~~~~~s~~~l~~V~V~vSD-L~S-~sG~~~i~g~~Itlr~V~yVLGyPD~LVP~d~p~~~v~ 154 (526)
.-.+-||+.+.|.+.+.. ...++.++|++.. +.+ ..+. ..+++ -.|..- .+.+.
T Consensus 29 ~~~~~~G~~ihfe~~i~d------~~~i~si~VeIH~nfd~H~h~~--~~~~~---------------~~~~~~-~~~~~ 84 (132)
T PF15418_consen 29 CKVATRGDDIHFEADISD------NSAIKSIKVEIHNNFDHHTHST--EAGEC---------------EKPWVF-EQDYD 84 (132)
T ss_pred CeEEecCCcEEEEEEEEc------ccceeEEEEEEecCcCcccccc--ccccc---------------ccCcEE-EEEEc
Confidence 456789999999999984 3568889998821 100 0010 00100 011110 11223
Q ss_pred ecCC-CeeEEEEEEEcCCCCCCceeEEEEEEEecCC
Q 009770 155 LIPG-ETTAVWVSIDAPYAQPPGLYEGEIIITSKAD 189 (526)
Q Consensus 155 V~ag-qtQpLWIdV~VP~dA~PG~Y~GtVtVt~~~~ 189 (526)
+..| .+.-+=..|.||++++||.|.-.|+|+.+.+
T Consensus 85 ~~~g~~~~~~h~~i~IPa~a~~G~YH~~i~VtD~~G 120 (132)
T PF15418_consen 85 IYGGKKNYDFHEHIDIPADAPAGDYHFMITVTDAAG 120 (132)
T ss_pred ccCCcccEeEEEeeeCCCCCCCcceEEEEEEEECCC
Confidence 3332 3556678999999999999999999997555
No 3
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.70 E-value=5.6 Score=44.33 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=67.6
Q ss_pred CCCCceEEEeecCceEEEEEEEccCcccCCCCCCcceEEEE-------cccCCCCCCcccccCceEEEEee---------
Q 009770 71 RPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQC-------SDLCSASGDRLVVGQSLMLRRVV--------- 134 (526)
Q Consensus 71 ~~~~~i~LsAaRGErvSFQlVLrs~~~~~s~~~l~~V~V~v-------SDL~S~sG~~~i~g~~Itlr~V~--------- 134 (526)
.+++...+.+.+|+|+..-.++..+ ....+++++++ +.|.+.++...+..+...-+.|.
T Consensus 226 t~g~y~~~i~~~g~ye~~~~av~l~-----d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~~t~sf~V~IeN~g~~~d 300 (513)
T COG1470 226 TPGKYVVLIAKKGIYEKKKRAVKLN-----DGETKDLKLSVTEKKSYFTELNSSDIYLEISPSTTASFTVSIENRGKQDD 300 (513)
T ss_pred cCcceEEEeccccceecceEEEEcC-----CCcccceeEEEEeccceEEEeecccceeEEccCCceEEEEEEccCCCCCc
Confidence 3578899999999888877777642 12233333322 22333222211111111111111
Q ss_pred -ecC---CCCcccccC----CCCcceeeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEecC
Q 009770 135 -PML---GVPDALVPL----DLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKA 188 (526)
Q Consensus 135 -yVL---GyPD~LVP~----d~p~~~v~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~~~ 188 (526)
|-| |.|+--... +.....+.|.||+...+-+.|+.|++|.||.|..+|+++++.
T Consensus 301 ~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~s 362 (513)
T COG1470 301 EYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASSSS 362 (513)
T ss_pred eeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEEEEEeccc
Confidence 111 344432222 222577899999999999999999999999999999998743
No 4
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=87.74 E-value=1.5 Score=47.92 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCccCC----CcCCCCceeEEeecCCCCCCCCcccccccccccceeeecCCCCCCChHHHHHHHHHH
Q 009770 314 YEALDQHFKWLLQYRISPF----FCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKE 389 (526)
Q Consensus 314 ~~aL~~~~~~ll~~risp~----f~~Wg~~mrv~~y~~pWp~dh~~sd~y~sd~~l~aY~vP~~~~~~g~~a~~~~lk~~ 389 (526)
|..||+.++.|++.+|.|+ |.|=. + + .+ ..+.+ .. ..+.-| .....++.++++++
T Consensus 83 f~~lD~i~D~l~~~g~~P~vel~f~p~~----~-~-~~----~~~~~----~~---~~~~~p----p~~~~~W~~lv~~~ 141 (486)
T PF01229_consen 83 FTYLDQILDFLLENGLKPFVELGFMPMA----L-A-SG----YQTVF----WY---KGNISP----PKDYEKWRDLVRAF 141 (486)
T ss_dssp -HHHHHHHHHHHHCT-EEEEEE-SB-GG----G-B-SS------EET----TT---TEE-S-----BS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCEEEEEEEechhh----h-c-CC----CCccc----cc---cCCcCC----cccHHHHHHHHHHH
Confidence 6799999999999999995 44310 0 0 00 00000 00 001111 24677899999999
Q ss_pred HHHHHhc-C--chhHHhhhhcCCCCCc---------ccHHHHHHHHHHHHHhCCCCcEEEEEeeC
Q 009770 390 IELLRTK-A--HWKKAYFYLWDEPLNM---------EHYSSVRNMASELHAYAPDARVLTTYYCG 442 (526)
Q Consensus 390 ~ehLr~K-g--w~~kay~Yl~DEP~~~---------e~y~~~r~~a~~ir~~aPd~riLtT~~~g 442 (526)
++|+..+ | ..++.||=+|.||... +=++.++..++.||+++|++||--...|.
T Consensus 142 ~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~~ 206 (486)
T PF01229_consen 142 ARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFAW 206 (486)
T ss_dssp HHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEET
T ss_pred HHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCccccc
Confidence 9999764 2 2233366689998641 22346788889999999999987665554
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=82.46 E-value=10 Score=36.66 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHHHhCCccCCCcCCCCceeEEeecCCCCCCCCcccccccccccceeeecCCCCCCChHHHHHHHHHH
Q 009770 310 SDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKE 389 (526)
Q Consensus 310 s~e~~~aL~~~~~~ll~~risp~f~~Wg~~mrv~~y~~pWp~dh~~sd~y~sd~~l~aY~vP~~~~~~g~~a~~~~lk~~ 389 (526)
.+..++.|++.++++.++.|....+- .-...|..+.... .....-.+.++++++.+
T Consensus 57 ~~~~~~~ld~~v~~a~~~gi~vild~--------h~~~~w~~~~~~~----------------~~~~~~~~~~~~~~~~l 112 (281)
T PF00150_consen 57 DETYLARLDRIVDAAQAYGIYVILDL--------HNAPGWANGGDGY----------------GNNDTAQAWFKSFWRAL 112 (281)
T ss_dssp THHHHHHHHHHHHHHHHTT-EEEEEE--------EESTTCSSSTSTT----------------TTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCeEEEEe--------ccCcccccccccc----------------ccchhhHHHHHhhhhhh
Confidence 35678999999999999999865321 1112331111000 00000112345577788
Q ss_pred HHHHHhcCchhHHhhhhcCCCCCc-----------ccH-HHHHHHHHHHHHhCCCCcEEEEEe
Q 009770 390 IELLRTKAHWKKAYFYLWDEPLNM-----------EHY-SSVRNMASELHAYAPDARVLTTYY 440 (526)
Q Consensus 390 ~ehLr~Kgw~~kay~Yl~DEP~~~-----------e~y-~~~r~~a~~ir~~aPd~riLtT~~ 440 (526)
+++++... ....+=++.||... +.| +.++++++.||+.+|+..|++...
T Consensus 113 a~~y~~~~--~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~ 173 (281)
T PF00150_consen 113 AKRYKDNP--PVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGG 173 (281)
T ss_dssp HHHHTTTT--TTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEH
T ss_pred ccccCCCC--cEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCC
Confidence 88886433 34555689999863 222 477899999999999988888874
No 6
>PF13731 WxL: WxL domain surface cell wall-binding
Probab=76.97 E-value=9.2 Score=37.43 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=49.1
Q ss_pred ceEEEEcccCCCCCCcccccCceEEEEeeec--CC---CCc------ccccCCCCcceeeecCCCeeEEE----------
Q 009770 106 VVQVQCSDLCSASGDRLVVGQSLMLRRVVPM--LG---VPD------ALVPLDLPVCQISLIPGETTAVW---------- 164 (526)
Q Consensus 106 ~V~V~vSDL~S~sG~~~i~g~~Itlr~V~yV--LG---yPD------~LVP~d~p~~~v~V~agqtQpLW---------- 164 (526)
.|+|+.++|++.+|.. +.+..|.+...... .+ -|- .|.+......-+.-.+++.+..|
T Consensus 105 ~L~v~~s~F~~~~~~~-L~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~A~~~~g~G~~~~~~~~~~~~ 183 (215)
T PF13731_consen 105 TLTVKLSPFTNADGDT-LPGATLTFNNGKVQSTANNTNTPTTVSSNITLTPGGQAQTVMSAAKGQGQGTWSYSFGDQDAT 183 (215)
T ss_pred EEEEEeccccccCCcC-cccceEEecCceeEeecccccCCcccccceEeccCCcceeeEeecccccceEEEEEeCCcccc
Confidence 4788999999988765 66666666543332 11 111 12222211122233456666666
Q ss_pred ----EEEEcCCCCC--CceeEEEEEEE
Q 009770 165 ----VSIDAPYAQP--PGLYEGEIIIT 185 (526)
Q Consensus 165 ----IdV~VP~dA~--PG~Y~GtVtVt 185 (526)
|.+.||.++. +|.|+++|+=+
T Consensus 184 ~~~~v~L~VP~~~~~~ag~Yt~tlTWt 210 (215)
T PF13731_consen 184 ADTGVSLSVPANTAKQAGTYTATLTWT 210 (215)
T ss_pred cccceEEEeCCCCcccCCcEEEEEEEE
Confidence 8899999998 79999999865
No 7
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=75.68 E-value=64 Score=29.43 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=68.4
Q ss_pred cccCCCCCC-CCCCceEEEeecCceEEEEEEEccCcccCCCCCCcceEEEEcccC-CCCCCcccccCceEEEEeeecC--
Q 009770 62 ANVGPQEMP-RPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLC-SASGDRLVVGQSLMLRRVVPML-- 137 (526)
Q Consensus 62 eKVfPde~P-~~~~~i~LsAaRGErvSFQlVLrs~~~~~s~~~l~~V~V~vSDL~-S~sG~~~i~g~~Itlr~V~yVL-- 137 (526)
.-|.|+..- .....+.|...-|+...+|+.+... +.....|+|++.+-. +.+| .+.|..
T Consensus 4 ~p~~p~~Q~~~~~~YFdL~~~P~q~~~l~v~i~N~-----s~~~~tv~v~~~~A~Tn~nG------------~I~Y~~~~ 66 (121)
T PF06030_consen 4 TPVLPENQIDKNVSYFDLKVKPGQKQTLEVRITNN-----SDKEITVKVSANTATTNDNG------------VIDYSQNN 66 (121)
T ss_pred eecCCccccCCCCCeEEEEeCCCCEEEEEEEEEeC-----CCCCEEEEEEEeeeEecCCE------------EEEECCCC
Confidence 345666554 2357899999999999999999852 122233444333221 2222 122221
Q ss_pred -CC-CcccccCCC---CcceeeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 009770 138 -GV-PDALVPLDL---PVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (526)
Q Consensus 138 -Gy-PD~LVP~d~---p~~~v~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~ 186 (526)
.. +++-.++.+ ....+.|+|++++-+=++|.+|+..-.|..-|-|.|+.
T Consensus 67 ~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 67 PKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred cccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 01 011112210 12349999999999999999999999999999999985
No 8
>COG1470 Predicted membrane protein [Function unknown]
Probab=69.85 E-value=26 Score=39.25 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=30.5
Q ss_pred eecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 009770 154 SLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (526)
Q Consensus 154 ~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~ 186 (526)
.|.||+.-.+=++|.||++|.||.|+.+|+.++
T Consensus 437 sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 437 SLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 467899999999999999999999999999987
No 9
>PF14352 DUF4402: Domain of unknown function (DUF4402)
Probab=67.78 E-value=5.8 Score=35.70 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=25.1
Q ss_pred ecCCCeeEEEE--EEEcCCCCCCceeEEEEEEEe
Q 009770 155 LIPGETTAVWV--SIDAPYAQPPGLYEGEIIITS 186 (526)
Q Consensus 155 V~agqtQpLWI--dV~VP~dA~PG~Y~GtVtVt~ 186 (526)
+..+....+.| ++.|++++++|.|+|+++|+.
T Consensus 95 ~~~~g~~~~~VGGtL~v~~~~~~G~YsGt~~VtV 128 (130)
T PF14352_consen 95 LDTGGSATFNVGGTLNVPANQAAGTYSGTFTVTV 128 (130)
T ss_pred ecCCCcEEEEEEEEEEcCCCCCCeEEEEEEEEEE
Confidence 33444556666 589999999999999999985
No 10
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=67.66 E-value=8.3 Score=39.64 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=58.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCccCCCc-CCCCceeEEee-cCCCCCCCCcccccccccccceeeecCCCCCCChHH
Q 009770 304 FGVRHGSDEWYEALDQHFKWLLQYRISPFFC-RWGESMRVLTY-TCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDG 381 (526)
Q Consensus 304 ~gv~~~s~e~~~aL~~~~~~ll~~risp~f~-~Wg~~mrv~~y-~~pWp~dh~~sd~y~sd~~l~aY~vP~~~~~~g~~a 381 (526)
+......+++|+.|++.++.|.+++|.+... -||.+ | .+.|.+..... +.+.
T Consensus 77 ~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~-----~~~~~Wg~~~~~m---------------------~~e~ 130 (289)
T PF13204_consen 77 FDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGCP-----YVPGTWGFGPNIM---------------------PPEN 130 (289)
T ss_dssp ---TT----HHHHHHHHHHHHHHTT-EEEEESS-HHH-----HH-------TTSS----------------------HHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCc-----cccccccccccCC---------------------CHHH
Confidence 4444556999999999999999999997622 23332 2 13454332222 6778
Q ss_pred HHHHHHHHHHHHHhcC--chhHHhhhhcCCCCCcccHHHHHHHHHHHHHhCCCCcEEEEEe
Q 009770 382 AKDYVRKEIELLRTKA--HWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYY 440 (526)
Q Consensus 382 ~~~~lk~~~ehLr~Kg--w~~kay~Yl~DEP~~~e~y~~~r~~a~~ir~~aPd~riLtT~~ 440 (526)
++.|+|=.++.+++.. ||..+--| .+.. +.-+.+++|++.||+.+|.- |.|+-
T Consensus 131 ~~~Y~~yv~~Ry~~~~NviW~l~gd~-~~~~---~~~~~w~~~~~~i~~~dp~~--L~T~H 185 (289)
T PF13204_consen 131 AERYGRYVVARYGAYPNVIWILGGDY-FDTE---KTRADWDAMARGIKENDPYQ--LITIH 185 (289)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEESSS---TT---SSHHHHHHHHHHHHHH--SS---EEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCcc-CCCC---cCHHHHHHHHHHHHhhCCCC--cEEEe
Confidence 9999999999999874 45433332 1212 34448889999999999987 66653
No 11
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=67.62 E-value=4.7 Score=37.37 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=40.8
Q ss_pred CeeEEEEEEEcCCCCCCceeEEEEEEEecCCcccccccccccchhhhHHhhhhcc
Q 009770 159 ETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCL 213 (526)
Q Consensus 159 qtQpLWIdV~VP~dA~PG~Y~GtVtVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (526)
+..+.|+.|.+..+..+ ..-.|++++++..-.-...|+++||..|+.||+..|
T Consensus 88 ~~~~~w~rv~~~~~~~~--~~~~l~L~~~g~~veiG~fL~~~eR~~la~~L~~aL 140 (140)
T PF10003_consen 88 EFNPYWVRVELEEDPGP--GPPRLTLRSRGREVEIGRFLNPEEREELARELRRAL 140 (140)
T ss_pred EEcCCeEEEEEEcCCCC--CCcEEEEEECCEEEEEccCCCHHHHHHHHHHHHhhC
Confidence 45688999999998887 555666766544434456899999999999999764
No 12
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=64.65 E-value=38 Score=36.14 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=100.0
Q ss_pred ChhhHhhhcCCCCCCHHHHHHHHHHHHHHHhCCccCCCcCCCCceeEEeecCCCCCCCCcccccccccccceeeecCCCC
Q 009770 296 SDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPV 375 (526)
Q Consensus 296 s~~~i~~~~gv~~~s~e~~~aL~~~~~~ll~~risp~f~~Wg~~mrv~~y~~pWp~dh~~sd~y~sd~~l~aY~vP~~~~ 375 (526)
+....+++ .-++-+.++++....-.+..+++-.++.. -+....|||.+..... ..|.-+|...
T Consensus 78 s~~~~~~~-~~~~~~~el~~~s~~~a~~Are~~~~~~~-------~v~gsiGp~~A~l~~g---------~eytg~Y~~~ 140 (317)
T KOG1579|consen 78 SSDGFEEY-VEEEELIELYEKSVELADLARERLGEETG-------YVAGSIGPYGATLADG---------SEYTGIYGDN 140 (317)
T ss_pred cchHHhhh-hhhHHHHHHHHHHHHHHHHHHHHhccccc-------eeeeecccccceecCC---------cccccccccc
Confidence 34444555 45555666666665555555554443331 1334455655333322 2355666654
Q ss_pred CCChHHHHHHHHHHHHHHHhcCchhHHhhhhcCCCCCcccHHHHHHHHHHHHHhCCCCcEEEEEeeCCCCCCCCCCccee
Q 009770 376 LSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFES 455 (526)
Q Consensus 376 ~~g~~a~~~~lk~~~ehLr~Kgw~~kay~Yl~DEP~~~e~y~~~r~~a~~ir~~aPd~riLtT~~~gp~~~~~~~~~~e~ 455 (526)
.+- +.+++|.|..++.+-++| -+..-| |-. .+...-..+.+.++.-.|+.++-+|..|.++.--.-+++||.
T Consensus 141 ~~~-~el~~~~k~qle~~~~~g-vD~L~f----ETi--p~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~ 212 (317)
T KOG1579|consen 141 VEF-EELYDFFKQQLEVFLEAG-VDLLAF----ETI--PNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEE 212 (317)
T ss_pred cCH-HHHHHHHHHHHHHHHhCC-CCEEEE----eec--CCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHH
Confidence 443 458899999999999999 333222 421 133356777788888899999999999999999999999999
Q ss_pred eeccccccCccc-----eeeecceeeecCh-hhhHHHHH
Q 009770 456 FVKVPKFLRPHT-----QIYCTSEWVLGNR-EDLVKDIV 488 (526)
Q Consensus 456 f~~v~~~l~~~~-----~~~~~~~~~~~~~-~d~~~~~~ 488 (526)
++-. +.--. =|-| ++++. +.+.+++.
T Consensus 213 ~~~~---~~~~~~~~~IGvNC----~~~~~~~~~~~~L~ 244 (317)
T KOG1579|consen 213 AAQL---LKDGINLLGIGVNC----VSPNFVEPLLKELM 244 (317)
T ss_pred HHHH---hccCCceEEEEecc----CCchhccHHHHHHh
Confidence 9762 22222 2456 45554 45556555
No 13
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=63.92 E-value=9.9 Score=34.15 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.2
Q ss_pred eeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 009770 153 ISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (526)
Q Consensus 153 v~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~ 186 (526)
=.+.+|+.. +=.++.||...++|.|+++.++.+
T Consensus 77 CPi~~G~~~-~~~~~~ip~~~P~g~y~v~~~l~d 109 (122)
T cd00917 77 CPIEPGDKF-LTKLVDLPGEIPPGKYTVSARAYT 109 (122)
T ss_pred CCcCCCcEE-EEEEeeCCCCCCCceEEEEEEEEC
Confidence 457788887 888899999999999999999986
No 14
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=62.92 E-value=37 Score=28.62 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=19.2
Q ss_pred CCCeeEEEEEEEcCCCCCCceeEEEEEEE
Q 009770 157 PGETTAVWVSIDAPYAQPPGLYEGEIIIT 185 (526)
Q Consensus 157 agqtQpLWIdV~VP~dA~PG~Y~GtVtVt 185 (526)
....-.+-.++.+|+++..|.|+.++...
T Consensus 58 ~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 58 TNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred eCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 34455677899999999999999999885
No 15
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=62.67 E-value=7.9 Score=33.87 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.1
Q ss_pred ceeeecCCCeeEEEEEEEcCCCCCC---ceeEEEEEEEecCC
Q 009770 151 CQISLIPGETTAVWVSIDAPYAQPP---GLYEGEIIITSKAD 189 (526)
Q Consensus 151 ~~v~V~agqtQpLWIdV~VP~dA~P---G~Y~GtVtVt~~~~ 189 (526)
..+.|+||+++-+=|++.+|++..+ ..|.|-|.+++..+
T Consensus 62 ~~vTV~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 62 DTVTVPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDG 103 (112)
T ss_dssp EEEEE-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTT
T ss_pred CeEEECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCC
Confidence 5799999999999999999998886 99999999997443
No 16
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=58.62 E-value=20 Score=31.59 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.4
Q ss_pred eeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEecC
Q 009770 153 ISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKA 188 (526)
Q Consensus 153 v~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~~~ 188 (526)
=.+.+|+..-.-+++.||...++|.|++++++++..
T Consensus 86 CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~ 121 (134)
T PF02221_consen 86 CPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQD 121 (134)
T ss_dssp STBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETT
T ss_pred CccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCC
Confidence 357899999999999999999999999999999743
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=45.40 E-value=30 Score=34.51 Aligned_cols=97 Identities=11% Similarity=0.174 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCccCC--CcCCCCceeEEeecCCCCCCCCcccccccccccceeeecCCCCCCChHHHHHHHHHHHH
Q 009770 314 YEALDQHFKWLLQYRISPF--FCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIE 391 (526)
Q Consensus 314 ~~aL~~~~~~ll~~risp~--f~~Wg~~mrv~~y~~pWp~dh~~sd~y~sd~~l~aY~vP~~~~~~g~~a~~~~lk~~~e 391 (526)
|+.+++.++|+.++.|... .+-|+.+ .| .|+... + .-.-..+..+|+++.++
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~~-------------~P---~W~~~~-------~---~~~~~~~~~~~i~~v~~ 68 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHSQ-------------TP---DWVFNL-------S---KETLLARLENHIKTVVG 68 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeeccc-------------CC---HhhhcC-------C---HHHHHHHHHHHHHHHHH
Confidence 6788999999999888743 1223332 11 111110 0 00113355668888888
Q ss_pred HHHhcCchhHHhhhhcCCCCCcc-------cH------HHHHHHHHHHHHhCCCCcEEEEEe
Q 009770 392 LLRTKAHWKKAYFYLWDEPLNME-------HY------SSVRNMASELHAYAPDARVLTTYY 440 (526)
Q Consensus 392 hLr~Kgw~~kay~Yl~DEP~~~e-------~y------~~~r~~a~~ir~~aPd~riLtT~~ 440 (526)
|++.+.. +.-++.||.+.. .| +.++.+.+.+|+++|++|++..-|
T Consensus 69 ry~g~i~----~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 69 RYKGKIY----AWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HhCCcce----EEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 8876633 133678876531 12 678899999999999999999865
No 18
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=39.34 E-value=58 Score=28.44 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=27.8
Q ss_pred eecCCCeeEEEEEEEcCCCCCCceeEEEEEEEec
Q 009770 154 SLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSK 187 (526)
Q Consensus 154 ~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~~ 187 (526)
.+.+|+..-.=.++.||...++|.|++++++++.
T Consensus 73 Pl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~ 106 (118)
T smart00737 73 PIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDE 106 (118)
T ss_pred CCCCCeeEEEEEeeEccccCCCeEEEEEEEEEcC
Confidence 4677886555567799999999999999999863
No 19
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=28.50 E-value=1e+02 Score=31.83 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEeeC
Q 009770 416 YSSVRNMASELHAYAPDARVLTTYYCG 442 (526)
Q Consensus 416 y~~~r~~a~~ir~~aPd~riLtT~~~g 442 (526)
-+...++|+.||+.+|+++|+-.--||
T Consensus 156 ~~r~i~~AkaiK~~DP~a~v~GP~~wg 182 (239)
T PF12891_consen 156 RDRSIEYAKAIKAADPDAKVFGPVEWG 182 (239)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEE-S
T ss_pred HHHHHHHHHHHHhhCCCCeEeechhhc
Confidence 345667899999999999999887666
No 20
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=28.49 E-value=46 Score=29.80 Aligned_cols=38 Identities=29% Similarity=0.276 Sum_probs=32.2
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHHHHhCC-CCcEEEEEe
Q 009770 403 YFYLWDEPLNMEHYSSVRNMASELHAYAP-DARVLTTYY 440 (526)
Q Consensus 403 y~Yl~DEP~~~e~y~~~r~~a~~ir~~aP-d~riLtT~~ 440 (526)
.+.+.|||..-=|.+..+.+++.+++... +..++.|+-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 44589999876688899999999999987 899999874
No 21
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=27.36 E-value=1.4e+02 Score=31.76 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhcCc----hh--HHhhhhcCCCCC------cccHHHHHHHHHHHHHhCCCCcEE
Q 009770 380 DGAKDYVRKEIELLRTKAH----WK--KAYFYLWDEPLN------MEHYSSVRNMASELHAYAPDARVL 436 (526)
Q Consensus 380 ~a~~~~lk~~~ehLr~Kgw----~~--kay~Yl~DEP~~------~e~y~~~r~~a~~ir~~aPd~riL 436 (526)
.++++++.+-++.|.+||. ++ -+|.| +.+... .+.++.++.+++.+|+..|+++|+
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~-~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEY-WAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEeeccchhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4689988777899999997 44 34543 222111 245667888888889999999886
No 22
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=27.10 E-value=34 Score=38.41 Aligned_cols=41 Identities=44% Similarity=0.987 Sum_probs=34.0
Q ss_pred cceeeeccccccCccceeeecc----eee--ecChhhhHH--HHHHhcCCCCCe
Q 009770 452 PFESFVKVPKFLRPHTQIYCTS----EWV--LGNREDLVK--DIVTELQPENGE 497 (526)
Q Consensus 452 ~~e~f~~v~~~l~~~~~~~~~~----~~~--~~~~~d~~~--~~~~~~~~~~~~ 497 (526)
.|-+| ||.|+|| .||.+ -|| -|+-||++| +++.||-|+|-.
T Consensus 341 ~fPgf--VpayIrP---LFc~G~GPFRW~aLSgdpeDi~~tD~~~~el~p~n~~ 389 (561)
T COG2987 341 DFPGF--VPAYIRP---LFCEGIGPFRWVALSGDPEDIYKTDAAVKELFPDNKH 389 (561)
T ss_pred cCCcc--hHHhhhh---hhhcCcCCeeEEEecCCHHHHHHHHHHHHHhCCCcHH
Confidence 45567 8999999 99987 487 499999997 688999999864
No 23
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=23.90 E-value=91 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=21.0
Q ss_pred ecCCCeeEEEEEEEcCCCCCCceeEEEEEEE
Q 009770 155 LIPGETTAVWVSIDAPYAQPPGLYEGEIIIT 185 (526)
Q Consensus 155 V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt 185 (526)
+...+...+=|.|.+|++|+-|.|+-.|.++
T Consensus 87 v~~~~~~~~tv~V~spa~A~VG~y~l~v~~~ 117 (118)
T PF00868_consen 87 VESQDGNSVTVSVTSPANAPVGRYKLSVETK 117 (118)
T ss_dssp EEEEETTEEEEEEE--TTS--EEEEEEEEEE
T ss_pred EEecCCCEEEEEEECCCCCceEEEEEEEEEe
Confidence 3344444578899999999999999999886
No 24
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=23.37 E-value=2.5e+02 Score=22.96 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=23.8
Q ss_pred eeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 009770 153 ISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (526)
Q Consensus 153 v~V~agqtQpLWIdV~VP~dA~PG~Y~GtVtVt~ 186 (526)
-.+++|+. --|.+ .|...+||.|.+.|+|+=
T Consensus 19 ~~lP~gt~-~~w~~--~pdt~~~G~~~~~V~Vty 49 (65)
T PF08428_consen 19 DNLPAGTT-YSWKD--KPDTSKPGTKTGKVKVTY 49 (65)
T ss_pred ccCCCCcc-eeecc--CCccccCccEEEEEEEEc
Confidence 34555544 46776 899999999999999984
No 25
>PRK05414 urocanate hydratase; Provisional
Probab=21.17 E-value=56 Score=37.18 Aligned_cols=40 Identities=43% Similarity=1.007 Sum_probs=31.8
Q ss_pred ceeeeccccccCccceeeecc----eee--ecChhhhHH--HHHHhcCCCCCe
Q 009770 453 FESFVKVPKFLRPHTQIYCTS----EWV--LGNREDLVK--DIVTELQPENGE 497 (526)
Q Consensus 453 ~e~f~~v~~~l~~~~~~~~~~----~~~--~~~~~d~~~--~~~~~~~~~~~~ 497 (526)
|-+| ||.|+|| +||.+ -|| -|+.|||.| +++.|+-|+|..
T Consensus 342 ~P~f--V~~~irp---lF~~G~GPFRWvalSGdpeDi~~TD~~~~e~~~~~~~ 389 (556)
T PRK05414 342 FPGF--VPAYIRP---LFCEGKGPFRWVALSGDPEDIYKTDAAVKELFPDDEH 389 (556)
T ss_pred CCCc--hhhhcch---hhhcCCCCceEEEcCCCHHHHHHHHHHHHHhcccchH
Confidence 4456 8999999 69976 477 499999987 788899887653
No 26
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=21.05 E-value=98 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.5
Q ss_pred eeEEEEEEEcCCCCCCceeEEEE
Q 009770 160 TTAVWVSIDAPYAQPPGLYEGEI 182 (526)
Q Consensus 160 tQpLWIdV~VP~dA~PG~Y~GtV 182 (526)
.-.++++|.+.++++||.|+..+
T Consensus 47 ~~~v~v~V~~aa~a~~G~~~v~v 69 (81)
T PF09099_consen 47 PDEVVVRVKAAADAAPGIRTVRV 69 (81)
T ss_dssp STCEEEEEEEECTSSSEEEEEEE
T ss_pred CCEEEEEEEEcCCCCCccEEEEe
Confidence 33689999999999999998655
No 27
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=20.88 E-value=99 Score=27.78 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCceeEEEEEEEe
Q 009770 164 WVSIDAPYAQPPGLYEGEIIITS 186 (526)
Q Consensus 164 WIdV~VP~dA~PG~Y~GtVtVt~ 186 (526)
=+.+.||++-++|.|+.+|+=+-
T Consensus 65 ~l~~~lPa~L~~G~Y~l~V~Tq~ 87 (102)
T PF14734_consen 65 RLIFILPADLAAGEYTLEVRTQY 87 (102)
T ss_pred EEEEECcCccCceEEEEEEEEEe
Confidence 36889999999999999998875
No 28
>PLN02489 homocysteine S-methyltransferase
Probab=20.55 E-value=4.7e+02 Score=27.78 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHHHHhcCchhHHhhhhcCCCCCcccHHHHHHHHHHHHHhCCCCcEEEEEeeCCCCCCCCCCcceeee
Q 009770 378 SNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFV 457 (526)
Q Consensus 378 g~~a~~~~lk~~~ehLr~Kgw~~kay~Yl~DEP~~~e~y~~~r~~a~~ir~~aPd~riLtT~~~gp~~~~~~~~~~e~f~ 457 (526)
..+.++++.+..++.|.+.| .-.++=|= +-..+.++.+.+.+|+..+++++++++.|-....-.-+++++..+
T Consensus 161 ~~~e~~~~~~~qi~~l~~~g-----vD~i~~ET--~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~ 233 (335)
T PLN02489 161 TLEKLKDFHRRRLQVLAEAG-----PDLIAFET--IPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECA 233 (335)
T ss_pred CHHHHHHHHHHHHHHHHhCC-----CCEEEEec--cCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHH
Confidence 44677788888888886665 11222232 224557888889999888889999999984333334667777776
Q ss_pred cccc-ccCc-cceeeecc
Q 009770 458 KVPK-FLRP-HTQIYCTS 473 (526)
Q Consensus 458 ~v~~-~l~~-~~~~~~~~ 473 (526)
..-+ ...+ ..-|-|++
T Consensus 234 ~~~~~~~~~~~iGiNC~~ 251 (335)
T PLN02489 234 SIADSCKKVVAVGINCTP 251 (335)
T ss_pred HHHHhcCCceEEEecCCC
Confidence 5532 1222 35577864
No 29
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=20.33 E-value=3.4e+02 Score=21.67 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=21.9
Q ss_pred eEEEEEEEcCCCCCCceeEEEEEEEecCC
Q 009770 161 TAVWVSIDAPYAQPPGLYEGEIIITSKAD 189 (526)
Q Consensus 161 QpLWIdV~VP~dA~PG~Y~GtVtVt~~~~ 189 (526)
+..|.. -+|.+...|.|+.+++++++++
T Consensus 9 ~~~~~~-~~P~~~~dg~yt~~v~a~D~AG 36 (60)
T PF12245_consen 9 SGVWST-VIPENDADGEYTLTVTATDKAG 36 (60)
T ss_pred ccceec-cccCccCCccEEEEEEEEECCC
Confidence 344543 3699988999999999998666
No 30
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=20.11 E-value=1.1e+02 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCchhHHhhhhcCCCCCcccHHHHHHHHH
Q 009770 387 RKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMAS 424 (526)
Q Consensus 387 k~~~ehLr~Kgw~~kay~Yl~DEP~~~e~y~~~r~~a~ 424 (526)
+++++++|++|+|++.---+|++-...+.|+.++.-..
T Consensus 1 ~~Lv~~fKk~G~FD~lRk~~l~~~~~~~~~~~l~~~v~ 38 (106)
T PF05205_consen 1 KQLVEEFKKQGHFDKLRKECLADFDTSPAYQNLRQRVE 38 (106)
T ss_pred ChHHHHHHhCCChHHHHHHHHHhccccHHHHHHHHHHH
Confidence 36789999999999877777777766677777665543
Done!