BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009771
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 193/426 (45%), Gaps = 49/426 (11%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
GWV D G + + + + I G++ + S NL++LD+ SNN S IP D S
Sbjct: 170 GWV--LSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDC-S 223
Query: 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
L ++ + N L+G + I + L++L++ SN G IP +++L+ LSL NK
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 186 SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIG-------------------- 225
+G +P + + L LDLS N G +P G
Sbjct: 282 TGEIPDFLSG------ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 226 -----SLRNLKELDLSSNKLGGVLPQEIENLK-SLTALSMDANNLGGPIPSTLFR--LTN 277
+R LK LDLS N+ G LP+ + NL SL L + +NN GPI L +
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 278 IEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 337
++ L L N F G IP + N L SL L N L+G IPS+LG L+ L+ L L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 338 SSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFN 397
IP + L L L N + G IP L+ G+IP IG+L N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 398 LASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTEKCDVYSFGVVALE 457
LA L LS N SG+IP E+G+C L L LN N NG + M G +A
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-------GKIAAN 568
Query: 458 ILMGRH 463
+ G+
Sbjct: 569 FIAGKR 574
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 166/341 (48%), Gaps = 19/341 (5%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
LQ L L +N +G IP + + S L ++L N L+GTIP +GSL L L L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
G IP E+ V+ LETL LD N L+G IP + + NL W+ LS+N+L+G IPK
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTG-------EIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 223 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLT-NIEYL 281
IG L NL L LS+N G +P E+ + +SL L ++ N G IP+ +F+ + I
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 282 SLGFNRF----NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 337
+ R+ N + +E NL + G L RL++ +++S
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLL-------EFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 338 SSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFN 397
N ++ +LD+S N + G IP E+ G IP +G L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 398 LASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAH 438
L LDLS NKL G IP + + L + L++N+L+G +
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 190/399 (47%), Gaps = 43/399 (10%)
Query: 81 IGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
+ L ++ GE+ L LDL N+ G++P S S L + L NN +G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 141 IPKE-IGSLRNLEVLDLGSNNLNGTIPIEIGSVR-NLETLSLDGNKLSG-VLP------- 190
+P + + +R L+VLDL N +G +P + ++ +L TL L N SG +LP
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 191 -----IYF------GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
+Y G IP + + L L LS N LSGTIP +GSL L++L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 240 LGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNL 299
L G +PQE+ +K+L L +D N+L G IPS L TN+ ++SL NR G IP+ I L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 300 KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI--------GNF-SAL 350
+NL L L N +G+IP+ LG SL LDL++N + +IP + NF +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 351 SYLDLSDN---RIC----------GIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFN 397
Y+ + ++ + C GI ++L G +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 398 LASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKL 436
+ LD+S N LSG IP EIG+ L L L HN ++G +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 185/399 (46%), Gaps = 53/399 (13%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYENNLTGT 140
L S+I G + F C +L LDL N+LSG + + + S S L ++ + N L
Sbjct: 84 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 141 IPKEIG---SLRNLEVLDLGSNNLNGTIPIEI---GSVRNLETLSLDGNKLSGVLPIYFG 194
P ++ L +LEVLDL +N+++G + L+ L++ GNK+SG
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG------- 192
Query: 195 TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL 254
+++ NL++LD+SSN S IP +G L+ LD+S NKL G + I L
Sbjct: 193 --DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 255 TALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLT 313
L++ +N GPIP L +++YLSL N+F G IP + LT L L GN
Sbjct: 250 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 314 GHIPSTLG-------------------------RLTSLQILDLSSNQLHSSIPLVIGNFS 348
G +P G ++ L++LDLS N+ +P + N S
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 349 A-LSYLDLSDNRICGIIPDELTX--XXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSK 405
A L LDLS N G I L G+IP + L SL LS
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 406 NKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTE 444
N LSG+IP+ +G+ S+LR+L L N L G++ ++ +
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 187/404 (46%), Gaps = 42/404 (10%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
GWV D G + + + + I G++ + S NL++LD+ SNN S IP D S
Sbjct: 167 GWV--LSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDC-S 220
Query: 126 NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
L ++ + N L+G + I + L++L++ SN G IP +++L+ LSL NK
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 278
Query: 186 SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIG-------------------- 225
+G +P + + L LDLS N G +P G
Sbjct: 279 TGEIPDFLSG------ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 226 -----SLRNLKELDLSSNKLGGVLPQEIENLK-SLTALSMDANNLGGPIPSTLFR--LTN 277
+R LK LDLS N+ G LP+ + NL SL L + +NN GPI L +
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 278 IEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 337
++ L L N F G IP + N L SL L N L+G IPS+LG L+ L+ L L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 338 SSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFN 397
IP + L L L N + G IP L+ G+IP IG+L N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 398 LASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMV 441
LA L LS N SG+IP E+G+C L L LN N NG + M
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 166/339 (48%), Gaps = 19/339 (5%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
LQ L L +N +G IP + + S L ++L N L+GTIP +GSL L L L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
G IP E+ V+ LETL LD N L+G IP + + NL W+ LS+N+L+G IPK
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTG-------EIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 223 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLT-NIEYL 281
IG L NL L LS+N G +P E+ + +SL L ++ N G IP+ +F+ + I
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 282 SLGFNRF----NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLH 337
+ R+ N + +E NL + G L RL++ +++S
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLL-------EFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 338 SSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFN 397
N ++ +LD+S N + G IP E+ G IP +G L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 398 LASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKL 436
L LDLS NKL G IP + + L + L++N+L+G +
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 190/399 (47%), Gaps = 43/399 (10%)
Query: 81 IGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
+ L ++ GE+ L LDL N+ G++P S S L + L NN +G
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 141 IPKE-IGSLRNLEVLDLGSNNLNGTIPIEIGSVR-NLETLSLDGNKLSG-VLP------- 190
+P + + +R L+VLDL N +G +P + ++ +L TL L N SG +LP
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 191 -----IYF------GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
+Y G IP + + L L LS N LSGTIP +GSL L++L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 240 LGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNL 299
L G +PQE+ +K+L L +D N+L G IPS L TN+ ++SL NR G IP+ I L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 300 KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI--------GNF-SAL 350
+NL L L N +G+IP+ LG SL LDL++N + +IP + NF +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 351 SYLDLSDN---RIC----------GIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFN 397
Y+ + ++ + C GI ++L G +
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 398 LASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKL 436
+ LD+S N LSG IP EIG+ L L L HN ++G +
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 185/399 (46%), Gaps = 53/399 (13%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYENNLTGT 140
L S+I G + F C +L LDL N+LSG + + + S S L ++ + N L
Sbjct: 81 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 141 IPKEIG---SLRNLEVLDLGSNNLNGTIPIEI---GSVRNLETLSLDGNKLSGVLPIYFG 194
P ++ L +LEVLDL +N+++G + L+ L++ GNK+SG
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG------- 189
Query: 195 TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL 254
+++ NL++LD+SSN S IP +G L+ LD+S NKL G + I L
Sbjct: 190 --DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
Query: 255 TALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLT 313
L++ +N GPIP L +++YLSL N+F G IP + LT L L GN
Sbjct: 247 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 314 GHIPSTLG-------------------------RLTSLQILDLSSNQLHSSIPLVIGNFS 348
G +P G ++ L++LDLS N+ +P + N S
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 349 A-LSYLDLSDNRICGIIPDELTX--XXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSK 405
A L LDLS N G I L G+IP + L SL LS
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 406 NKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTE 444
N LSG+IP+ +G+ S+LR+L L N L G++ ++ +
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 150/300 (50%), Gaps = 18/300 (6%)
Query: 103 LQYLDLGSNNLSGSIPSQID-SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
LQYL L N +G IP + + LT + L N+ G +P GS LE L L SNN
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 162 NGTIPIE-IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQW----LDLSSNKL 216
+G +P++ + +R L+ L L N+ SG LP ESL NL LDLSSN
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELP----------ESLTNLSASLLTLDLSSNNF 377
Query: 217 SGTI-PKEIGSLRN-LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR 274
SG I P + +N L+EL L +N G +P + N L +L + N L G IPS+L
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 275 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
L+ + L L N G IP+E++ +K L +L L N LTG IPS L T+L + LS+N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 335 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGK 394
+L IP IG L+ L LS+N G IP EL G IP A+ K
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 20/291 (6%)
Query: 61 TSDHCG--WVGITCDYEG---RITDIGLQKSNIKGELGRLNFSCFPNLQYLDL----GSN 111
T+D C W+G+ CD + R+ ++ L N+ S NL YL+ G N
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGIN 87
Query: 112 NLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGS 171
NL G IP I L+ L Y+Y+ N++G IP + ++ L LD N L+GT+P I S
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 172 VRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLK 231
+ NL ++ DGN++SG +P +G+ S+ +S N+L+G IP +L NL
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT------ISRNRLTGKIPPTFANL-NLA 200
Query: 232 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS 291
+DLS N L G + K+ + + N+L + N+ L L NR G+
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGT 259
Query: 292 IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
+P+ + LK L SL++ N L G IP G L + ++N+ PL
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 11/227 (4%)
Query: 141 IPKEIGSLRNLEVLDLGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIE 199
IP + +L L L +G NNL G IP I + L L + +SG +P + I
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--- 124
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL-TALS 258
+ L LD S N LSGT+P I SL NL + N++ G +P + L T+++
Sbjct: 125 ----KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 259 MDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS 318
+ N L G IP T L N+ ++ L N G + KN + L N L +
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 319 TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
+G +L LDL +N+++ ++P + L L++S N +CG IP
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 34/248 (13%)
Query: 196 IPIEIESLRNLQWLDLSS-NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL 254
IP + +L L +L + N L G IP I L L L ++ + G +P + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 255 TALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNL-TSLSLGGNKLT 313
L N L G +P ++ L N+ ++ NR +G+IP + L TS+++ N+LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 314 GHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXX 373
G IP T L +L +DLS N L ++ G+ + L+ N +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA------------ 234
Query: 374 XXXXXXXXXXXXGQIPFAIGKL---FNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 430
F +GK+ NL LDL N++ G++P + L +L ++ N
Sbjct: 235 ----------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 431 SLNGKLAH 438
+L G++
Sbjct: 279 NLCGEIPQ 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 142/284 (50%), Gaps = 32/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 126
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L+ SSN++ + P + NL +L L + +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 236
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 237 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 118/275 (42%), Gaps = 65/275 (23%)
Query: 92 LGRLNFSC-----------FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
L +LNFS L+ LD+ SN +S S + L+NL + N ++
Sbjct: 153 LQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 210
Query: 141 IPKEIGSLRNLEVLDLGSNNLN--GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPI 198
P +G L NL+ L L N L GT+ S+ NL L L N++S + P+
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL------- 257
Query: 199 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 258
L L L L +N++S P + L L L+L+ N+L + P I NLK+LT L+
Sbjct: 258 --SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 259 MDANNLGGPIP--------------------STLFRLTNIEYLSLGFNRFNGSIPREIVN 298
+ NN+ P S+L LTNI +LS G N+ + P + N
Sbjct: 312 LYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 299 LKNLTSLSLGGNKLTG---------HIPSTLGRLT 324
L +T L L T IP+T+ +T
Sbjct: 370 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 32/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 126
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L SSN++ + P + NL +L L + +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 236
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 237 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 175 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 230
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
GT+ S+ NL L L N++S + P+ L L L L +N++S
Sbjct: 231 DIGTL----ASLTNLTDLDLANNQISNLAPL---------SGLTKLTELKLGANQISNIS 277
Query: 221 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP----------- 269
P + L L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 278 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Query: 270 ---------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG------ 314
S+L LTNI +LS G N+ + P + NL +T L L T
Sbjct: 334 FSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 391
Query: 315 ---HIPSTLGRLT 324
IP+T+ +T
Sbjct: 392 ANVSIPNTVKNVT 404
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 32/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 126
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L SSN++ + P + NL +L L + +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 236
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 237 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 175 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 230
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
GT+ S+ NL L L N++S + P+ L L L L +N++S
Sbjct: 231 DIGTL----ASLTNLTDLDLANNQISNLAPL---------SGLTKLTELKLGANQISNIS 277
Query: 221 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP----------- 269
P + L L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 278 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Query: 270 ---------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG------ 314
S+L LTNI +LS G N+ + P + NL +T L L T
Sbjct: 334 FYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 391
Query: 315 ---HIPSTLGRLT 324
IP+T+ +T
Sbjct: 392 ANVSIPNTVKNVT 404
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 126
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L+ N++ + P + NL +L L + +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISS 181
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 235
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 236 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 120/275 (43%), Gaps = 55/275 (20%)
Query: 82 GLQKSNIKGELGRLN-FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
LQ+ N ++ L + L+ LD+ SN +S S + L+NL + N ++
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 141 IPKEIGSLRNLEVLDLGSNNLN--GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPI 198
P +G L NL+ L L N L GT+ S+ NL L L N++S + P+
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL------- 256
Query: 199 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 258
L L L L +N++S P + L L L+L+ N+L + P I NLK+LT L+
Sbjct: 257 --SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 259 MDANNLGGPIP--------------------STLFRLTNIEYLSLGFNRFNGSIPREIVN 298
+ NN+ P S+L LTNI +LS G N+ + P + N
Sbjct: 311 LYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LAN 368
Query: 299 LKNLTSLSLGGNKLTG---------HIPSTLGRLT 324
L +T L L T IP+T+ +T
Sbjct: 369 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 81 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 126
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L+ N++ + P + NL +L L + +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISS 181
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 235
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 236 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 120/275 (43%), Gaps = 55/275 (20%)
Query: 82 GLQKSNIKGELGRLN-FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGT 140
LQ+ N ++ L + L+ LD+ SN +S S + L+NL + N ++
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 141 IPKEIGSLRNLEVLDLGSNNLN--GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPI 198
P +G L NL+ L L N L GT+ S+ NL L L N++S + P+
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL------- 256
Query: 199 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 258
L L L L +N++S P + L L L+L+ N+L + P I NLK+LT L+
Sbjct: 257 --SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 259 MDANNLGGPIP--------------------STLFRLTNIEYLSLGFNRFNGSIPREIVN 298
+ NN+ P S+L LTNI +LS G N+ + P + N
Sbjct: 311 LYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LAN 368
Query: 299 LKNLTSLSLGGNKLTG---------HIPSTLGRLT 324
L +T L L T IP+T+ +T
Sbjct: 369 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 139/284 (48%), Gaps = 33/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 31 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 85
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 86 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 131
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L N++ + P + NL +L L + +
Sbjct: 132 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS 186
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 187 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 240
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 241 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 282
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
GT+ S+ NL L L N++S + P+ L L L L +N++S
Sbjct: 235 DIGTL----ASLTNLTDLDLANNQISNLAPL---------SGLTKLTELKLGANQISNIS 281
Query: 221 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP----------- 269
P + L L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 337
Query: 270 ---------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG------ 314
S+L LTNI +LS G N+ + P + NL +T L L T
Sbjct: 338 FYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395
Query: 315 ---HIPSTLGRLT 324
IP+T+ +T
Sbjct: 396 ANVSIPNTVKNVT 408
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 139/284 (48%), Gaps = 33/284 (11%)
Query: 83 LQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
L K+N+ + + + LQ LG ++ G ++ L+NLT I N LT P
Sbjct: 30 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 84
Query: 143 KEIGSLRNL-EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIE 201
L+NL +++D+ NN + ++ NL L+L N+++ + P+ +
Sbjct: 85 -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL---------K 130
Query: 202 SLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDA 261
+L NL L+LSSN +S + L +L++L N++ + P + NL +L L + +
Sbjct: 131 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS 185
Query: 262 NNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLG 321
N + S L +LTN+E L N+ + P I L NL LSL GN+L TL
Sbjct: 186 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 239
Query: 322 RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
LT+L LDL++NQ+ + PL + L+ L L N+I I P
Sbjct: 240 SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 281
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L+ LD+ SN +S S + L+NL + N ++ P +G L NL+ L L N L
Sbjct: 178 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 233
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
GT+ S+ NL L L N++S + P+ L L L L +N++S
Sbjct: 234 DIGTL----ASLTNLTDLDLANNQISNLAPL---------SGLTKLTELKLGANQISNIS 280
Query: 221 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP----------- 269
P + L L L+L+ N+L + P I NLK+LT L++ NN+ P
Sbjct: 281 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 336
Query: 270 ---------STLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG------ 314
S+L LTNI +LS G N+ + P + NL +T L L T
Sbjct: 337 FANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 394
Query: 315 ---HIPSTLGRLT 324
IP+T+ +T
Sbjct: 395 ANVSIPNTVKNVT 407
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 141/331 (42%), Gaps = 52/331 (15%)
Query: 59 QNTSDHCGWVGITCD----------YEG----RITDIGLQKSNIKGELGRLNFSCFPNLQ 104
QN++ W+G D +EG + I LQK +L F CF +Q
Sbjct: 222 QNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQ 280
Query: 105 YLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGT 164
LDL + +L+G +P I + +L+ L L +N+ +
Sbjct: 281 ELDLTAAHLNG-------------------------LPSGIEGMNSLKKLVLNANSFDQL 315
Query: 165 IPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL--SGTIPK 222
I S +L L + GN + + GT +E L NLQ LDLS + + S
Sbjct: 316 CQINAASFPSLRDLYIKGN----MRKLDLGTRCLE--KLENLQKLDLSHSDIEASDCCNL 369
Query: 223 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYL 281
++ +LR+L+ L+LS N+ G+ Q + L L + +L P + F+ L + L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 282 SLGFNRFNGSIPREIVNLKNLTSLSLGGNKLT-GHIPST--LGRLTSLQILDLSSNQLHS 338
+L + S + L++L L+L GN G I T L + SL+IL LSS L S
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 339 SIPLVIGNFSALSYLDLSDNRICGIIPDELT 369
+++LDLS N + G D L+
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALS 520
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 40/296 (13%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPS--QIDSLSNLTYIYLYEN 135
+ D+ ++ + K +LG NLQ LDL +++ S Q+ +L +L Y+ L N
Sbjct: 326 LRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN 385
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIE-------------------------IG 170
G + LE+LD+ +L+ P +
Sbjct: 386 EPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA 445
Query: 171 SVRNLETLSLDGNKLSGVLPIYFGTIPIE--IESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
+++L L+L GN G+I ++ + +L+ L LSS L + LR
Sbjct: 446 GLQDLRHLNLQGNSFQD------GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLR 499
Query: 229 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 288
N+ LDLS N L G + +LK L L+M +NN+ P L L+ ++L N
Sbjct: 500 NVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Query: 289 NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVI 344
+ + N+ +T +KL +T SL+ + LS +LH +++
Sbjct: 559 DCTCS----NIHFITWYKENLHKLEDSEETTCANPPSLRGVKLSDVKLHCGTHMLV 610
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 26/163 (15%)
Query: 122 DSLSNLTYIYLYENNLTGTIPKEIGS-LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180
D+L N T + + N TI S L NL LDL +N S L T+ L
Sbjct: 28 DTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVL 87
Query: 181 DGNKL---------------------SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGT 219
GN L +G+ + F I + +L NL+ L L SN +S
Sbjct: 88 TGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEF----IPVHNLENLESLHLGSNHISSI 143
Query: 220 IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 262
E +NLK LD +N + + ++ +L+ T LS++ N
Sbjct: 144 NLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFN 186
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 117/309 (37%), Gaps = 96/309 (31%)
Query: 127 LTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-----NLNGTIPIEIGSVRNLE----- 176
L +++L + ++ + +L NLE L LGSN NL P + V + +
Sbjct: 106 LKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIH 165
Query: 177 ----------------TLSLDGNKLSGVLP----------IYFG---TIPIEIESLRN-- 205
+L+ +GN + G+ P + FG + I + L+N
Sbjct: 166 YISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNST 225
Query: 206 LQ--WL---------------------------DLSSNKLSGTIPKEIGSLRNLKELDLS 236
LQ WL +L ++ S ++ELDL+
Sbjct: 226 LQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLT 285
Query: 237 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREI 296
+ L G LP IE + SL L ++AN+ L ++ + SL R++
Sbjct: 286 AAHLNG-LPSGIEGMNSLKKLVLNANSF-----DQLCQINAASFPSL----------RDL 329
Query: 297 VNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS--IPLVIGNFSALSYLD 354
N+ L LG L +L +LQ LDLS + + +S L + N L YL+
Sbjct: 330 YIKGNMRKLDLG--------TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLN 381
Query: 355 LSDNRICGI 363
LS N G+
Sbjct: 382 LSYNEPLGL 390
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
N +D S L IP I + + + L L NKLS + F L L+ L
Sbjct: 17 NKNSVDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSSLPSKAF-------HRLTKLRLL 66
Query: 210 DLSSNKLSGTIPKEI-GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
L+ NKL T+P I L+NL+ L ++ NKL + + L +L L +D N L
Sbjct: 67 YLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125
Query: 269 PSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
P LT + YLSLG+N S+P+ + + L +L L L N+L +LT L+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
L L +NQL + L L L +N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 17/191 (8%)
Query: 104 QYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNL 161
+ LDL SN LS S+PS+ L+ L +YL +N L T+P I L+NLE L + N L
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 162 NGTIPIEI-GSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
+PI + + NL L LD N+L + P F +SL L +L L N+L ++
Sbjct: 98 QA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVF-------DSLTKLTYLSLGYNELQ-SL 148
Query: 221 PKEI-GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNI 278
PK + L +LKEL L +N+L V + L L L +D N L +P F L +
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKL 207
Query: 279 EYLSLGFNRFN 289
+ L L N ++
Sbjct: 208 KMLQLQENPWD 218
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDL SNKLS K L L+ L L+ NKL + + LK+L L + N L +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 269 PSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
P +F +L N+ L L N+ PR +L LT LSLG N+L +LTSL+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
L L +NQL + L L L +N++
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
+D SS KL+ IP I + + K+LDL SNKL + + L L L ++ N L +
Sbjct: 21 VDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-L 76
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
P+ +F+ L N+E L + N+ ++P + + L NL L L N+L P LT L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 327 QILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
L L N+L S V ++L L L +N++
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLD 155
F NL L L N L P DSL+ LTY+ L N L ++PK + L +L+ L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR 163
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSN 214
L +N L + L+TL LD N+L V F +SL L+ L L N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF-------DSLEKLKMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 304 SLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L L NKL+ RLT L++L L+ N+L + + L L ++DN++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--- 97
Query: 364 IPDELTXXXXXXXXXXXXXXXXGQIPFAI-GKLFNLASLDLSKNKLSGSIPTEIGNCSEL 422
+P + +L NLA L L +N+L P + ++L
Sbjct: 98 ----------------------QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 423 RNLTLNHNSL 432
L+L +N L
Sbjct: 136 TYLSLGYNEL 145
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 37/188 (19%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + N +YL++N +T P SL NL+ L LGSN L G +P+ +
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV----- 83
Query: 175 LETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELD 234
+SL L LDL +N+L+ L +LKEL
Sbjct: 84 -------------------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 235 LSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIP 293
+ NKL LP+ IE L LT L++D N L IP F RL+++ + L N ++
Sbjct: 119 MCCNKLTE-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCEC- 175
Query: 294 REIVNLKN 301
R+I+ L+N
Sbjct: 176 RDIMYLRN 183
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 194 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 253
++P I + N Q L L N+++ P SL NLKEL L SN+LG + ++L
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 254 LTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL 312
LT L + N L +PS +F RL +++ L + N+ +PR I L +LT L+L N+L
Sbjct: 90 LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Query: 313 TGHIPSTLGRLTSL 326
RL+SL
Sbjct: 148 KSIPHGAFDRLSSL 161
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNN 160
N Q L L N ++ P DSL NL +YL N L G +P + SL L VLDLG+N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
L + +L+ L + NKL+ +P IE L +L L L N+L +I
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT--------ELPRGIERLTHLTHLALDQNQLK-SI 150
Query: 221 PKEIGSLRNLKEL 233
P G+ L L
Sbjct: 151 PH--GAFDRLSSL 161
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 167 IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI-G 225
+ G N + L L N+++ + P F +SL NL+ L L SN+L G +P +
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVF-------DSLINLKELYLGSNQL-GALPVGVFD 85
Query: 226 SLRNLKELDLSSNKLGGVLPQEI-ENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLG 284
SL L LDL +N+L VLP + + L L L M N L +P + RLT++ +L+L
Sbjct: 86 SLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALD 143
Query: 285 FNRFNGSIPREIVN-LKNLTSLSLGGN 310
N+ SIP + L +LT L GN
Sbjct: 144 QNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 269 PSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
P L N++ L LG N+ G++P + + L LT L LG N+LT + RL L+
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
L + N+L + +P I + L++L L N++
Sbjct: 116 ELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F NL+ L LGSN L G++P + DSL+ LT + L N LT L +L+ L
Sbjct: 60 FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV 188
+ N L +P I + +L L+LD N+L +
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIP-STLGRLTSLQILDLSSN 334
TN + L L N+ P +L NL L LG N+L G +P LT L +LDL +N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 335 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGK 394
QL V L L + N++ ++P I +
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKL-------------------------TELPRGIER 133
Query: 395 LFNLASLDLSKNKLSGSIP 413
L +L L L +N+L SIP
Sbjct: 134 LTHLTHLALDQNQLK-SIP 151
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKE 144
SN G L F L LDLG+N L+ +PS + D L +L +++ N LT +P+
Sbjct: 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRG 130
Query: 145 IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLS 179
I L +L L L N L I G+ L +L+
Sbjct: 131 IERLTHLTHLALDQNQLKS---IPHGAFDRLSSLT 162
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
I + N+ L+L GNKL + ++ L NL +L L+ N+L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI---------SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 229 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNR 287
NLKEL L N+L +P +F +LTN+ YL+L N+
Sbjct: 110 NLKELVLVENQLQS-------------------------LPDGVFDKLTNLTYLNLAHNQ 144
Query: 288 FNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGN 346
S+P+ + + L NLT L L N+L +LT L+ L L NQL S V
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 347 FSALSYLDLSDN 358
++L Y+ L DN
Sbjct: 204 LTSLQYIWLHDN 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 275 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
L N+ YL+LG N+ + + L NLT L L GN+L +LT+L+ L L N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 335 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAI-G 393
QL S V + L+YL+L+ N++ +P +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQL-------------------------QSLPKGVFD 154
Query: 394 KLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSL 432
KL NL LDLS N+L ++L++L L N L
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 73/192 (38%), Gaps = 40/192 (20%)
Query: 102 NLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
NL YL L N L S+P+ + D L+NL + L EN L L NL L+L N
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
L ++P GV + L NL LDLS N+L
Sbjct: 145 LQ-SLP-------------------KGVF-----------DKLTNLTELDLSYNQLQSLP 173
Query: 221 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEY 280
L LK+L L N+L V + L SL + + N P I Y
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRY 226
Query: 281 LSLGFNRFNGSI 292
LS N+ +G +
Sbjct: 227 LSEWINKHSGVV 238
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLD 155
F NL+ L L N L D L+NLTY+ L N L ++PK + L NL LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNK 215
L N L + L+ L L N+L V F + L +LQ++ L N
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF-------DRLTSLQYIWLHDNP 216
Query: 216 LSGTIP 221
T P
Sbjct: 217 WDCTCP 222
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 163 GTIPIE-IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIP 221
G IE I + NL L L N+++ + P+ ++L + L+LS N L
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPL---------KNLTKITELELSGNPLKNV-- 106
Query: 222 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYL 281
I L+++K LDL+S ++ V P + L +L L +D N + P L LTN++YL
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 162
Query: 282 SLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIP 341
S+G N+ N P + NL LT+L NK++ P L L +L + L NQ+ P
Sbjct: 163 SIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
Query: 342 L 342
L
Sbjct: 219 L 219
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 82/209 (39%), Gaps = 10/209 (4%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-NLN 162
Q + L N +S + S NLT ++L+ N L G L LE LDL N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
P + +L TL LD L + P F L LQ+L L N L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLF-------RGLAALQYLYLQDNNLQALPDN 146
Query: 223 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLS 282
L NL L L N++ V L SL L + N++ P L + L
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 283 LGFNRFNGSIPREI-VNLKNLTSLSLGGN 310
L N + +P E+ V L++L L L N
Sbjct: 207 LFANNLS-MLPAEVLVPLRSLQYLRLNDN 234
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 79/194 (40%), Gaps = 9/194 (4%)
Query: 176 ETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDL 235
+ + L GN++S V F +S RNL L L SN L+G L L++LDL
Sbjct: 34 QRIFLHGNRISYVPAASF-------QSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDL 86
Query: 236 SSN-KLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPR 294
S N +L V P L L L +D L P L ++YL L N
Sbjct: 87 SDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDN 146
Query: 295 EIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLD 354
+L NLT L L GN++ L SL L L N + P + L L
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 355 LSDNRICGIIPDEL 368
L N + ++P E+
Sbjct: 207 LFANNL-SMLPAEV 219
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
G + + L + ++ ELG F LQYL L NNL + L NLT+++L+ N
Sbjct: 104 GHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGT 195
+ L +L+ L L N++ P + L TL L N LS
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS--------M 214
Query: 196 IPIEI-ESLRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI--ENL 251
+P E+ LR+LQ+L L+ N + + + + L++ SS+++ LPQ + +L
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCNLPQRLAGRDL 272
Query: 252 KSLTALSMD 260
K L A ++
Sbjct: 273 KRLAASDLE 281
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 155
Query: 210 DLSSNKLSGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
DLSSNK+ ++ L + LDLS N + + P + ++ L L++D N L
Sbjct: 156 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK 214
Query: 266 GPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 294
+P +F RLT+++ + L N ++ S PR
Sbjct: 215 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 89
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 90 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 127
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 104 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 156
Query: 210 DLSSNKLSGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
DLSSNK+ ++ L + LDLS N + + P + ++ L L++D N L
Sbjct: 157 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK 215
Query: 266 GPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 294
+P +F RLT+++ + L N ++ S PR
Sbjct: 216 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 90
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
SL F+G S+ + + NL SL + P +G L +L
Sbjct: 91 Q------------SLALGAFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 128
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 154
Query: 210 DLSSNKLSGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
DLSSNK+ ++ L + LDLS N + + P + ++ L L++D N L
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK 213
Query: 266 GPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 294
+P +F RLT+++ + L N ++ S PR
Sbjct: 214 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 88
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 89 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 126
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 129/303 (42%), Gaps = 47/303 (15%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEV--- 153
F PNL+ LDLGS+ + P L +L + LY L+ + K+ G RNL+
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTR 127
Query: 154 LDLGSNNLNG-TIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESL--RNLQWLD 210
LDL N + + G + +L+++ N++ F E+E L + L +
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-------FLVCEHELEPLQGKTLSFFS 180
Query: 211 LSSNKLSGTIPKEIGSLRN------LKELDLSSN----KLGGVLPQEIENLKSLTAL--- 257
L++N L + + G N L+ LD+S N + G I ++ + +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 258 -----SMDANNLGGPIPSTLFRL--TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 310
+N+ P +T L +++ +L L R LK+L L+L N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 311 KLTGHIPSTLGRLTSLQILDLSSN---QLHSSIPLVIGNFSAL---SYLDLSDNRICGII 364
K+ L +LQ+L+LS N +L+SS NF L +Y+DL N I II
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSS------NFYGLPKVAYIDLQKNHI-AII 353
Query: 365 PDE 367
D+
Sbjct: 354 QDQ 356
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 121/280 (43%), Gaps = 47/280 (16%)
Query: 87 NIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIG 146
N+ GEL NF P + Y+DL N+++ L L + L +N LT I
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL 206
+ ++ + L N L T+P +I NL + L N+L + +YF + + +L
Sbjct: 379 FIPSIPDIFLSGNKL-VTLP-KINLTANL--IHLSENRLENLDILYF------LLRVPHL 428
Query: 207 QWLDLSSNKLSGT----IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 262
Q L L+ N+ S P E SL L L + + L T L D
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQL------------FLGENMLQLAWETELCWDV- 475
Query: 263 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 322
G L++++ L L N N P +L L LSL N+LT + S
Sbjct: 476 -FEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDL 524
Query: 323 LTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNR-IC 361
+L+ILD+S NQL + P V F +LS LD++ N+ IC
Sbjct: 525 PANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFIC 561
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 39/241 (16%)
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL 206
+L++L+VL+L N +N + NL+ L+L N L + F +P +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-------KV 340
Query: 207 QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV-----LPQEI---ENLKSLTALS 258
++DL N ++ + L L+ LDL N L + +P L +L ++
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 259 MDAN----------NLGGPIPSTLFRLTNIEYLSLGFNRFNG----SIPREIVNLKNLTS 304
+ AN NL I L R+ +++ L L NRF+ P E +L+ L
Sbjct: 401 LTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF- 457
Query: 305 LSLGGNKL-----TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNR 359
LG N L T L+ LQ+L L+ N L+S P V + +AL L L+ NR
Sbjct: 458 --LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 360 I 360
+
Sbjct: 516 L 516
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 120/298 (40%), Gaps = 49/298 (16%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS--NLTYIYLYEN 135
+T + L K+ I+ +F +L+ +D SN + +++ L L++ L N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 136 NLTGTIPKEIGSLRN------LEVLDLGSNNLNGTIPIEIG-SVRNLETLSL-------- 180
+L + + G N LE+LD+ N I ++ + SL
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 181 -----------DGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 229
D N +G + S+R+L DLS + + +L++
Sbjct: 245 AGFGFHNIKDPDQNTFAG----------LARSSVRHL---DLSHGFVFSLNSRVFETLKD 291
Query: 230 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 289
LK L+L+ NK+ + + L +L L++ N LG S + L + Y+ L N
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 290 GSIPREIVNLKNLTSLSLGGNKLT--GHIPS------TLGRLTSLQILDLSSNQLHSS 339
+ L+ L +L L N LT IPS + +L +L ++L++N +H S
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 16/155 (10%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
E+L++L+ L+L+ NK++ + L NL+ L+LS N LG + L + + +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 260 DANNLGGPIPSTLFRLTNIEYLSLGFN-----RFNGSIP------REIVNLK--NLTS-- 304
N++ T L ++ L L N F SIP ++V L NLT+
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 305 LSLGGNKLTG-HIPSTLGRLTSLQILDLSSNQLHS 338
+ L N+L I L R+ LQIL L+ N+ S
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 155
Query: 210 DLSSNKLSGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
DLSSNK+ ++ L + LDLS N + + P + ++ L L++D N L
Sbjct: 156 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK 214
Query: 266 GPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 294
+P +F RLT+++ + L N ++ S PR
Sbjct: 215 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 89
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 90 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 127
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
I+ L N+++L L NKL + L NL L L+ N+L + + L +L L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 260 DANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIP 317
N L +P +F +LTN+ YL L N+ S+P+ + + L NLT L L N+L
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 318 STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
+LT L+ L L+ NQL S V ++L+++ L +N
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLS 282
I L N++ L L NKL + ++ L +LT L + N L +P+ +F +LTN++ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 283 LGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIP 341
L N+ S+P + + L NLT L L N+L +LT+L LDL +NQL S
Sbjct: 116 LVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 342 LVIGNFSALSYLDLSDNRICGIIPD 366
V + L L L+DN++ +PD
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKS-VPD 198
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 38/202 (18%)
Query: 275 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
L N+ YL+LG N+ + + L NLT L L GN+L +LT+L+ L L N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 335 QLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAI-G 393
QL S V + L+YL L N++ +P +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQL-------------------------QSLPKGVFD 154
Query: 394 KLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNG----------KLAHTMVVT 443
KL NL LDL N+L ++L+ L+LN N L L H ++
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 444 EKCDVYSFGVVALEILMGRHPG 465
D ++ L + +HPG
Sbjct: 215 NPWDCACSDILYLSRWISQHPG 236
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLRNLEVLD 155
F NL+ L L N L D L+NLTY+YLY N L ++PK + L NL LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLD 163
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV 188
L +N L + L+ LSL+ N+L V
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 102 NLQYLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
NL YL L N L S+P+ + D L+NL + L EN L L NL L L N
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL 216
L + NL L LD N+L + F + L L+ L L+ N+L
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF-------DKLTQLKQLSLNDNQL 193
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 77/201 (38%), Gaps = 18/201 (8%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-NLN 162
Q + L N +S + + NLT ++L+ N L L LE LDL N L
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGVLP-IYFGTIPIE----------------IESLRN 205
P + L TL LD L + P ++ G ++ L N
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
L L L N++S + L +L L L N++ V P +L L L + ANNL
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 266 GPIPSTLFRLTNIEYLSLGFN 286
L L ++YL L N
Sbjct: 214 ALPTEALAPLRALQYLRLNDN 234
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
GR+ + L + ++ ELG F LQYL L N L L NLT+++L+ N
Sbjct: 104 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGT 195
++ + L +L+ L L N + P + L TL L N LS
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-------- 214
Query: 196 IPIE-IESLRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI--ENL 251
+P E + LR LQ+L L+ N + + + + L++ SS+++ LPQ + +L
Sbjct: 215 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQRLAGRDL 272
Query: 252 KSLTA 256
K L A
Sbjct: 273 KRLAA 277
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 84/210 (40%), Gaps = 10/210 (4%)
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIP 221
G + +G + + L GN++S V F + RNL L L SN L+
Sbjct: 20 QGLQAVPVGIPAASQRIFLHGNRISHVPAASF-------RACRNLTILWLHSNVLARIDA 72
Query: 222 KEIGSLRNLKELDLSSN-KLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEY 280
L L++LDLS N +L V P L L L +D L P L ++Y
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 281 LSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLSSNQLHSS 339
L L N +L NLT L L GN+++ +P R L SL L L N++
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 340 IPLVIGNFSALSYLDLSDNRICGIIPDELT 369
P + L L L N + + + L
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSALPTEALA 221
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 77/201 (38%), Gaps = 18/201 (8%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN-NLN 162
Q + L N +S + + NLT ++L+ N L L LE LDL N L
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 163 GTIPIEIGSVRNLETLSLDGNKLSGVLP-IYFGTIPIE----------------IESLRN 205
P + L TL LD L + P ++ G ++ L N
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
L L L N++S + L +L L L N++ V P +L L L + ANNL
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 266 GPIPSTLFRLTNIEYLSLGFN 286
L L ++YL L N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 76 GRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
GR+ + L + ++ ELG F LQYL L N L L NLT+++L+ N
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 136 NLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGT 195
++ + L +L+ L L N + P + L TL L N LS
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-------- 215
Query: 196 IPIE-IESLRNLQWLDLSSNK-LSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI--ENL 251
+P E + LR LQ+L L+ N + + + + L++ SS+++ LPQ + +L
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQRLAGRDL 273
Query: 252 KSLTA 256
K L A
Sbjct: 274 KRLAA 278
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 84/210 (40%), Gaps = 10/210 (4%)
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIP 221
G + +G + + L GN++S V F + RNL L L SN L+
Sbjct: 21 QGLQAVPVGIPAASQRIFLHGNRISHVPAASF-------RACRNLTILWLHSNVLARIDA 73
Query: 222 KEIGSLRNLKELDLSSN-KLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEY 280
L L++LDLS N +L V P L L L +D L P L ++Y
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 281 LSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSLQILDLSSNQLHSS 339
L L N +L NLT L L GN+++ +P R L SL L L N++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 340 IPLVIGNFSALSYLDLSDNRICGIIPDELT 369
P + L L L N + + + L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALA 222
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 104 LQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 156
Query: 210 DLSSNKLSGTIPKEIGSLRNL----KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
DLSSNK+ ++ L + LDLS N + + P + ++ L L++D N L
Sbjct: 157 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK 215
Query: 266 GPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 294
+P +F RLT+++ + L N ++ S PR
Sbjct: 216 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 90
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 91 QS----------LALG--AFSGLSSLQKLVALETNLASLE--------NFP--IGHLKTL 128
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 9/230 (3%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTI 165
LDLG N + + S +L + L EN ++ P +L NL L L SN L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 166 PIEIGS-VRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI 224
P+ + + + NL L + NK+ +L F + L NL+ L++ N L +
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMF-------QDLYNLKSLEVGDNDLVYISHRAF 148
Query: 225 GSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLG 284
L +L++L L L + + + +L L L + N+ + RL ++ L +
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 285 FNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
+ ++ + NLTSLS+ LT + L L+ L+LS N
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 134/309 (43%), Gaps = 49/309 (15%)
Query: 75 EGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSL---------- 124
E R+ D+G K+ IK L + F+ FP+L+ L+L N +S P ++L
Sbjct: 33 ETRLLDLG--KNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 125 --------------SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIG 170
SNLT + + EN + + L NL+ L++G N+L
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 171 SVRNLETLSLDGNKLSGVLPIYFGTIPIE-IESLRNLQWLDLSSNKLSGTIPKEIGSLRN 229
+ +LE L+L+ L+ +IP E + L L L L ++ L
Sbjct: 150 GLNSLEQLTLEKCNLT--------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 230 LKELDLSS-NKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFN- 286
LK L++S L + P + L +LT+LS+ NL +P R L + +L+L +N
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP 259
Query: 287 --RFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ---LHSSIP 341
GS+ E++ L+ + L G +L P L L++L++S NQ L S+
Sbjct: 260 ISTIEGSMLHELLRLQ---EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316
Query: 342 LVIGNFSAL 350
+GN L
Sbjct: 317 HSVGNLETL 325
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDL N++ E S +L+EL+L+ N + V P NL +L L + +N L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-I 95
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
P +F L+N+ L + N+ + +L NL SL +G N L L SL+
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYL 353
L L L +SIP ALS+L
Sbjct: 156 QLTLEKCNL-TSIPT-----EALSHL 175
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 42/187 (22%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
T L LG NR E + +L L L N ++ P L +L+ L L SN+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 336 LHSSIPL-VIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGK 394
L IPL V S L+ LD+S+N+I + + +
Sbjct: 92 L-KLIPLGVFTGLSNLTKLDISENKIVIL------------------------LDYMFQD 126
Query: 395 LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTEKCDVYSFGVV 454
L+NL SL++ N L + ++H + +G + + EKC++ S
Sbjct: 127 LYNLKSLEVGDNDL----------------VYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 455 ALEILMG 461
AL L G
Sbjct: 171 ALSHLHG 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
L++L+L N +S S + L L I L L P L L VL++ N L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 163 GTIPIEIGSVRNLETLSLDGNKLS 186
SV NLETL LD N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 143/365 (39%), Gaps = 63/365 (17%)
Query: 122 DSLSNLTYIYLYENNLTGTIP-KEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSL 180
D+L N T + N TI + L NL LDL +N S L TL L
Sbjct: 26 DTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVL 85
Query: 181 DGN--------------KLSGVLPIYFGTIPIE---IESLRNLQWLDLSSNKLSG-TIPK 222
GN L + I G +E + +L NL+ L L SN +S PK
Sbjct: 86 TGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPK 145
Query: 223 EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM--DANNLG----GPIPSTLFRLT 276
+ + RNLK LD +N + + +++ +L+ LS+ + NN+ G ST+F+
Sbjct: 146 DFPA-RNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSL 204
Query: 277 NI---EYLSLGFNRFNGSIPREI---------------VNLKNLTSLSLGGNKLTGHIPS 318
N LS+ FN S + + LK L +S+ L H S
Sbjct: 205 NFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFS 264
Query: 319 -----TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXX 373
T T LQ LDL++ L +P + + L L LS N D+L
Sbjct: 265 DISSTTFQCFTQLQELDLTATHL-KGLPSGMKGLNLLKKLVLSVNHF-----DQLCQISA 318
Query: 374 XXXXXXXXXXXXGQIP---FAIG---KLFNLASLDLSKNKLSGS--IPTEIGNCSELRNL 425
G + +G KL NL +LDLS N + S ++ N S L+ L
Sbjct: 319 ANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 426 TLNHN 430
L+HN
Sbjct: 379 NLSHN 383
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 123/292 (42%), Gaps = 38/292 (13%)
Query: 75 EGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYE 134
E + + LQ+ ++ F CF LQ LDL + +L G
Sbjct: 250 EMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG------------------- 289
Query: 135 NNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFG 194
+P + L L+ L L N+ + I + +L L + GN V ++ G
Sbjct: 290 ------LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN----VKKLHLG 339
Query: 195 TIPIEIESLRNLQWLDLSSNKL--SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLK 252
+E L NLQ LDLS N + S ++ +L +L+ L+LS N+ G+ Q +
Sbjct: 340 VGCLE--KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECP 397
Query: 253 SLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 311
L L + L P + F+ L ++ L+L + + S + L L L+L GN
Sbjct: 398 QLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNH 457
Query: 312 LT-GHIPST--LGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
G I T L + SL++L LSS L S + +S++DLS N +
Sbjct: 458 FQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 45/264 (17%)
Query: 87 NIKG-ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI 145
N+KG ELG + + F +L + G P NL+ I+ N L + + +
Sbjct: 187 NVKGIELGAFDSTIFQSLNF---------GGTP-------NLSVIF---NGLQNSTTQSL 227
Query: 146 --GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESL 203
G+ +++ D+ S L G + + E+L+L ++ S + F +
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTF-------QCF 274
Query: 204 RNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN- 262
LQ LDL++ L G +P + L LK+L LS N + N SLT L + N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 263 ---NLGGPIPSTLFRLTNIEYLSLGFNRFNGS--IPREIVNLKNLTSLSLGGNKLTGHIP 317
+LG L +L N++ L L N S ++ NL +L +L+L N+ G
Sbjct: 334 KKLHLG---VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 318 STLGRLTSLQILDLSSNQLHSSIP 341
L++LDL+ +LH + P
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAP 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 119/286 (41%), Gaps = 50/286 (17%)
Query: 127 LTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL---------------------NGTI 165
L +++L + ++ + +L NLE L LGSN++ N
Sbjct: 104 LKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIH 163
Query: 166 PIEIGSVRNLE-----TLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
I +R+LE +L+ +GN + G+ F + + + L + N L +
Sbjct: 164 YISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNST 223
Query: 221 PKE--IGSLRNLKELDLSSNKLGGVLPQEIENLK------------------SLTALSMD 260
+ +G+ ++ + D+SS L G+ +E+L L L +
Sbjct: 224 TQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLT 283
Query: 261 ANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHI-PST 319
A +L G +PS + L ++ L L N F+ N +LT L + GN H+
Sbjct: 284 ATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGC 342
Query: 320 LGRLTSLQILDLSSNQLHSS--IPLVIGNFSALSYLDLSDNRICGI 363
L +L +LQ LDLS N + +S L + N S L L+LS N G+
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 33/277 (11%)
Query: 88 IKGELGRLNFS--CFP---NLQYLDLGSNNLSGS--IPSQIDSLSNLTYIYLYENNLTGT 140
I+G + +L+ C NLQ LDL N++ S Q+ +LS+L + L N G
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIP------IEIGSVRNLETLSLD--GNKLSGVLPI- 191
+ LE+LDL L+ P + V NL LD L LP+
Sbjct: 389 QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVL 448
Query: 192 --------YF--GTIPIE--IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
+F GTI ++++ +L+ L LSS L + SL + +DLS N
Sbjct: 449 RHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNS 508
Query: 240 LGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNL 299
L + +LK + L++ AN++ P L L+ ++L N + + N+
Sbjct: 509 LTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCS----NI 563
Query: 300 KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 336
LT +KL G +T SL+ + LS +L
Sbjct: 564 HFLTWYKENLHKLEGSEETTCANPPSLRGVKLSDVKL 600
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 27/240 (11%)
Query: 123 SLSNLTYIYLYENNLTGTIPK-EIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLD 181
+L+N I ++N+T T+ + ++ + L G + G + + NL L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELK 71
Query: 182 GNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLG 241
N+++ + P+ ++L + L+LS N L I L+++K LDL+S ++
Sbjct: 72 DNQITDLAPL---------KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT 120
Query: 242 GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKN 301
V P + L +L L +D N + P L LTN++YLS+G + + P + NL
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174
Query: 302 LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC 361
LT+L NK++ P L L +L + L +NQ+ PL N S L + L++ I
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTIT 230
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 237 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREI 296
SN V +++ + +L+A + G + L N+ L L N+ P +
Sbjct: 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDLAPLK- 82
Query: 297 VNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV-IGNFSALSYLDL 355
NL +T L L GN L S + L S++ LDL+S Q+ PL + N L YLDL
Sbjct: 83 -NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL-YLDL 138
Query: 356 SDNRICGIIP 365
N+I I P
Sbjct: 139 --NQITNISP 146
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 101 PNLQYLDLGSNNLS-GSIPSQID-SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158
P+L++LDL N LS SQ D ++L Y+ L N + T+ L LE LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 159 NNLNGTIPIEIG-SVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLS 217
+NL + S+RNL L + + F I L +L+ L ++ N
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTR----VAFNGI---FNGLSSLEVLKMAGNSFQ 458
Query: 218 -GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RL 275
+P LRNL LDLS +L + P +L SL L+M +N L +P +F RL
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRL 517
Query: 276 TNIEYLSLGFNRFNGSIPR 294
T+++ + L N ++ S PR
Sbjct: 518 TSLQKIWLHTNPWDCSCPR 536
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 100/245 (40%), Gaps = 19/245 (7%)
Query: 104 QYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
Q+L+L N G P+ ++ SL LT+ +N G E+ L +LE LDL N L+
Sbjct: 307 QHLEL-VNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEV-DLPSLEFLDLSRNGLS 360
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
G +L+ L L N GV+ T+ L L+ LD + L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFN---GVI-----TMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 221 PKEIG-SLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG-GPIPSTLFRLTNI 278
+ SLRNL LD+S L SL L M N+ +P L N+
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 279 EYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 338
+L L + P +L +L L++ N+L RLTSLQ + L +N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532
Query: 339 SIPLV 343
S P +
Sbjct: 533 SCPRI 537
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 154
Query: 210 DLSSNKLSGTIPKEIGSLRNL 230
DLSSNK+ ++ L +
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQM 175
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 193 FGTIPIEIESLRNL------QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQ 246
F + + IE +++ Q L+L + K G P L++LK L +SNK GG
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFS 342
Query: 247 EIENLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTS 304
E++ L SL L + N L G + F T+++YL L FN ++ + L+ L
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH 400
Query: 305 LSLGGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC-G 362
L + L S L +L LD+S + + S+L L ++ N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 363 IIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSEL 422
+PD T +L NL LDLS+ +L PT + S L
Sbjct: 461 FLPDIFT------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 423 RNLTLNHNSL 432
+ L + N L
Sbjct: 497 QVLNMASNQL 506
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 88
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 89 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 126
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 44/285 (15%)
Query: 102 NLQYLDLGSNNLSGSIP--------------------SQIDSLSNLTYIYLYENNLTGTI 141
NL+YL+L N ++ P S + +L+NL +YL E+N++
Sbjct: 67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS 126
Query: 142 PKEIGSLRNLEVLDLGSN-NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI 200
P + +L L+LG+N NL+ P+ + L L++ +K+ V PI
Sbjct: 127 P--LANLTKXYSLNLGANHNLSDLSPL--SNXTGLNYLTVTESKVKDVTPI--------- 173
Query: 201 ESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMD 260
+L +L L L+ N++ P + SL +L N++ + P + N L +L +
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIG 229
Query: 261 ANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTL 320
N + P L L+ + +L +G N+ S + +L L L++G N+++ S L
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISD--ISVL 283
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIP 365
L+ L L L++NQL + VIG + L+ L LS N I I P
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 25/112 (22%)
Query: 275 LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
LTN+EYL+L N+ P + NL LT+L +G NK+T S L LT+L+ L L+ +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 335 QLHSSIPLV---------------------IGNFSALSYLDLSDNRICGIIP 365
+ PL + N + L+YL ++++++ + P
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP 172
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
I+ L NL L+LS+N+++ P I L N+ +L L+ NKL + P + NLK+L L +
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 260 DANNLGGPIPSTLFRLTNIEYLSL-GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS 318
D N + + L G + NG +V+L L SL LG NK+T +
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITD--IT 170
Query: 319 TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L RLT L L L NQ+ +PL + L L LS N I +
Sbjct: 171 VLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL 213
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 40/205 (19%)
Query: 55 DRIPQNTSDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLS 114
D+I N SD GI Y +T + L + I ++ + + PN+ L L N L+
Sbjct: 47 DQIIANNSDIKSVQGIQ--YLPNLTSLNLSNNQI-TDISPIQY--LPNVTKLFLNGNKLT 101
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKE--------------------IGSLRNLEVL 154
P + +L NL +++L EN + + + L LE L
Sbjct: 102 DIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 159
Query: 155 DLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSN 214
LG+N + T + + L+TLSL+ N++S ++P + L LQ L LS N
Sbjct: 160 YLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP---------LAGLTKLQNLYLSKN 208
Query: 215 KLSGTIPKEIGSLRNLKELDLSSNK 239
+S + + L+NL L+L S +
Sbjct: 209 HISDL--RALAGLKNLDVLELFSQE 231
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 203 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 262
LR +Q DL K+ +P + L DL +NK+ + + +NLK+L L + N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 263 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 322
+ P L +E L L N+ +P ++ K L L + N++T S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 323 LTSLQILDLSSNQLHSSIPLVIGNFSA---LSYLDLSDNRICGI---IPDELTXXXXXXX 376
L + +++L +N L SS + G F LSY+ ++D I I +P LT
Sbjct: 144 LNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 377 XXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSL 432
++ L NLA L LS N +S + N LR L LN+N L
Sbjct: 203 KITKVDAA------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 16/238 (6%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
P+ LDL +N ++ +L NL + L N ++ P L LE L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL--SG 218
L +P ++ + L+ L + N+++ V F L + ++L +N L SG
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFN-------GLNQMIVVELGTNPLKSSG 161
Query: 219 TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNI 278
++ L + ++ + +PQ + SLT L +D N + ++L L N+
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 279 EYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 336
L L FN + + N +L L L NKL +P L +Q++ L +N +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 17/225 (7%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI 200
+PK++ + +LDL +N + + +++NL TL L NK+S + P F
Sbjct: 46 VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA------ 97
Query: 201 ESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMD 260
L L+ L LS N+L +P+++ + L+EL + N++ V L + + +
Sbjct: 98 -PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 261 ANNLGGP-IPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS 318
N L I + F+ + + Y+ + +IP+ + +LT L L GNK+T +
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAA 210
Query: 319 TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
+L L +L L LS N + + + N L L L++N++ +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 203 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 262
LR +Q DL K+ +P + L DL +NK+ + + +NLK+L L + N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 263 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 322
+ P L +E L L N+ +P ++ K L L + N++T S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 323 LTSLQILDLSSNQLHSSIPLVIGNFSA---LSYLDLSDNRICGI---IPDELTXXXXXXX 376
L + +++L +N L SS + G F LSY+ ++D I I +P LT
Sbjct: 144 LNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 377 XXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHNSL 432
++ L NLA L LS N +S + N LR L LN+N L
Sbjct: 203 KITKVDAA------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 16/238 (6%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
P+ LDL +N ++ +L NL + L N ++ P L LE L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL--SG 218
L +P ++ + L+ L + N+++ V F L + ++L +N L SG
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFN-------GLNQMIVVELGTNPLKSSG 161
Query: 219 TIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNI 278
++ L + ++ + +PQ + SLT L +D N + ++L L N+
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 279 EYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 336
L L FN + + N +L L L NKL +P L +Q++ L +N +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 17/225 (7%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI 200
+PK++ + +LDL +N + + +++NL TL L NK+S + P F
Sbjct: 46 VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA------ 97
Query: 201 ESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMD 260
L L+ L LS N+L +P+++ + L+EL + N++ V L + + +
Sbjct: 98 -PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 261 ANNLGGP-IPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPS 318
N L I + F+ + + Y+ + +IP+ + +LT L L GNK+T +
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAA 210
Query: 319 TLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
+L L +L L LS N + + + N L L L++N++ +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 170 GSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN 229
G R++ L LDGN+ F +P E+ + ++L +DLS+N++S + ++
Sbjct: 28 GIPRDVTELYLDGNQ--------FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 230 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFN 286
L L LS N+L + P+ + LKSL LS+ N++ +P F L+ + +L++G N
Sbjct: 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 213 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 272
SNK +PK I R++ EL L N+ ++P+E+ N K LT + + N + +
Sbjct: 18 SNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 273 FRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLS 332
+T + L L +NR PR LK+L LSL GN ++ L++L L +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
Query: 333 SNQLH 337
+N L+
Sbjct: 135 ANPLY 139
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 237 SNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREI 296
SNK VLP+ I + +T L +D N +P L ++ + L NR + +
Sbjct: 18 SNKGLKVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 297 VNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLS 356
N+ L +L L N+L P T L SL++L L N + + SALS+L +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
Query: 357 DN 358
N
Sbjct: 135 AN 136
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 284 GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 343
G IPR++ T L L GN+ T +P L L ++DLS+N++ +
Sbjct: 21 GLKVLPKGIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 344 IGNFSALSYLDLSDNRICGIIP 365
N + L L LS NR+ I P
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPP 95
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 117 IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176
+P ++ + +LT I L N ++ + ++ L L L N L P +++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 177 TLSLDGNKLSGVLP------------IYFGTIPIEIESLRNLQWL 209
LSL GN +S V+P + G P+ + N+QWL
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDC--NMQWL 147
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 233 LDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGS 291
LDL +N L + + L SLT L + N L +P+ +F +LT++ YL+L N+ S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 292 IPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSAL 350
+P + + L L L+L N+L +LT L+ L L NQL S V ++L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 351 SYLDLSDN 358
Y+ L DN
Sbjct: 151 QYIWLHDN 158
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 208 WLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGP 267
+LDL +N L L +L +L L NKL + L SLT L++ N L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90
Query: 268 IPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTS 325
+P+ +F +LT ++ L+L N+ S+P + + L L L L N+L RLTS
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 326 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGII 364
LQ + L N + P + YL N+ G++
Sbjct: 150 LQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV 181
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSS 213
LDL +N+L + +L L L GNKL + F L +L +L+LS+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF-------NKLTSLTYLNLST 85
Query: 214 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 273
N+L L LKEL L++N+L + + L L L + N L +P +F
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144
Query: 274 -RLTNIEYLSLGFNRFNGSIP 293
RLT+++Y+ L N ++ + P
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCP 165
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 255 TALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
T L ++ N+L +P+ +F LT++ L LG N+ S+P + N L +LT L+L N+L
Sbjct: 31 TYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88
Query: 313 TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD 366
+LT L+ L L++NQL S V + L L L N++ +PD
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPD 141
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 105 YLDLGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG 163
YLDL +N+L S+P+ + D L++LT +YL N L L +L L+L +N L
Sbjct: 32 YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 164 TIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKE 223
++P +GV + L L+ L L++N+L
Sbjct: 90 SLP-------------------NGVF-----------DKLTQLKELALNTNQLQSLPDGV 119
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
L LK+L L N+L V + L SL + + N P I YLS
Sbjct: 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSE 172
Query: 284 GFNRFNGSI 292
N+ +G +
Sbjct: 173 WINKHSGVV 181
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 18/167 (10%)
Query: 65 CGWVGITCDYEGRI---TDIGLQKSNIKGELGRLN------FSCFPNLQYLDLGSNNLSG 115
C + C +GR T I Q + + E L F +L L LG N L
Sbjct: 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65
Query: 116 SIPSQI-DSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ + + L++LTY+ L N L L L+ L L +N L +
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 175 LETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIP 221
L+ L L N+L V F + L +LQ++ L N T P
Sbjct: 126 LKDLRLYQNQLKSVPDGVF-------DRLTSLQYIWLHDNPWDCTCP 165
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 35/192 (18%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSS 213
LD +N L T+ G + LETL L N+L + I T +++LQ LD+S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-----QMKSLQQLDISQ 383
Query: 214 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 273
N +S + K+ D S K SL +L+M +N L T+F
Sbjct: 384 NSVS----------YDEKKGDCSWTK-------------SLLSLNMSSNILTD----TIF 416
Query: 274 RLT--NIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDL 331
R I+ L L N+ SIP+++V L+ L L++ N+L RLTSLQ + L
Sbjct: 417 RCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 332 SSNQLHSSIPLV 343
+N S P +
Sbjct: 476 HTNPWDCSCPRI 487
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI 200
+PK++ + +L++ N ++ +I S+ L L + N++ Y +
Sbjct: 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKF 67
Query: 201 ESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV-LPQEIENLKSLTALSM 259
+ L++LDLS NKL + NLK LDLS N + + +E N+ L L +
Sbjct: 68 N--QELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122
Query: 260 DANNL 264
+L
Sbjct: 123 STTHL 127
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 120/299 (40%), Gaps = 15/299 (5%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H I D IT + L + ++ L NF+ + L LD G N++S P
Sbjct: 13 HLKLTHIPDDLPSNITVLNLTHNQLR-RLPPTNFTRYSQLAILDAGFNSISKLEPELCQI 71
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ + NL LDL SN+++ + +NL L L N
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 184 KLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRN--LKELDLSSNKLG 241
LS GT L + NK+ +E+ L N L++LDLSSN L
Sbjct: 132 GLSST---KLGTGVQLENLQELLL----AKNKILALRSEELEFLGNSSLRKLDLSSNPLK 184
Query: 242 GVLPQEIENLKSLTALSMDANNLGGPIPSTL-FRLTN--IEYLSLGFNRFNGSIPREIVN 298
P + + L AL ++ L + L + L+N I+ LSL N+ +
Sbjct: 185 EFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSG 244
Query: 299 LK--NLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDL 355
LK NLT L L N L + L SL+ L L N + P S L YL L
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLD 210
L LDL SN L P ++ L L L+ +L+ P + E+ + ++Q L
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLN---PHLTEKLCWELSN-TSIQNLS 228
Query: 211 LSSNKLSGTIPKEIGSLR--NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
L++N+L T L+ NL +LDLS N L V L SL LS++ NN+
Sbjct: 229 LANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLS 288
Query: 269 PSTLFRLTNIEYLSL--GFNRFNGSIPRE-------IVNLKNLTSLSLGGNKLTGHIPST 319
P + + L+N+ YLSL F + + S+ LK L L++ N + +T
Sbjct: 289 PRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNT 348
Query: 320 LGRLTSLQILDLS----SNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L SL+ L LS S Q ++ V S L L+L+ N I I
Sbjct: 349 FTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKI 396
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ +L+YL L S + +L+N T++ L + NLT +I +
Sbjct: 349 FTGLVSLKYLSLSKTFTS------LQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFS 402
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRN 205
L L +LDLG N + + E +RN+ + L NK + F +P +
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVP-------S 455
Query: 206 LQWLDLSSNKLSGT--IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANN 263
LQ L L L P LRNL LDLS+N + + +E L++L L NN
Sbjct: 456 LQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 264 L---------GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLT 313
L GGP+ + L L+++ L+L N + IP + NL L S++LG N L
Sbjct: 516 LARLWKRANPGGPV-NFLKGLSHLHILNLESNGLD-EIPVGVFKNLFELKSINLGLNNLN 573
Query: 314 GHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 358
P TSL+ L+L N + S V G F L+ LD+ N
Sbjct: 574 KLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 110/296 (37%), Gaps = 35/296 (11%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSL--SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
+Q L L +N L + S L +NLT + L NNL L +L L L NN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 161 LNGTIPIEIGSVRNLETLSLDG--NKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSG 218
+ P + NL LSL K S L + + L+ L++L++ N +
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPS 343
Query: 219 TIPKEIGSLRNLKELDLSSN--KLGGVLPQEIENLKS--LTALSMDANNLGGPIPSTLFR 274
T L +LK L LS L + + +L L L++ N++ T
Sbjct: 344 TKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW 403
Query: 275 LTNIEYLSLGFNRFNGSIP-REIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ------ 327
L + L LG N + +E L+N+ + L NK S+ + SLQ
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 328 --------------------ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
ILDLS+N + + ++ L LD N + +
Sbjct: 464 VALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL 519
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 72/181 (39%), Gaps = 22/181 (12%)
Query: 196 IPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 255
IP ++ S N+ L+L+ N+L P L LD N + + P+ + L L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 256 ALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGH 315
L++ N L T TN+ L L N + N KNL L L N L+
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS- 135
Query: 316 IPSTLG-----------RLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGII 364
+ LG L +IL L S +L +GN S+L LDLS N +
Sbjct: 136 --TKLGTGVQLENLQELLLAKNKILALRSEELE-----FLGN-SSLRKLDLSSNPLKEFS 187
Query: 365 P 365
P
Sbjct: 188 P 188
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGS--IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSL 148
+L +F+ P+LQ L L L PS L NLT + L NN+ + L
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGL 503
Query: 149 RNLEVLDLGSNNL 161
NLE+LD NNL
Sbjct: 504 ENLEILDFQHNNL 516
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 35/284 (12%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ NL+YL +LS S S + +L+N T++ L + NLT +I S
Sbjct: 349 FTGLINLKYL-----SLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRN 205
L +LEVLDLG N + + E + N+ + L NK + F +P SL+
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP----SLQR 458
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL- 264
L ++ + + P LRNL LDLS+N + + +E L+ L L + NNL
Sbjct: 459 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Query: 265 --------GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGH 315
GGPI L L+++ L+L N F+ IP E+ +L L + LG N L
Sbjct: 518 RLWKHANPGGPI-YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 575
Query: 316 IPSTLGRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 358
S SL+ L+L N + S V G F L+ LD+ N
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 136/343 (39%), Gaps = 42/343 (12%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H + D IT + L + ++ L NF+ + L LD+G N +S P
Sbjct: 13 HLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ K NL L L SN++ +NL TL L N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 184 KLSGVLPIYFGTIPI------------EIESLR----------NLQWLDLSSNKLSGTIP 221
LS GT +I++L+ +L+ L+LSSN++ P
Sbjct: 132 GLSST---KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Query: 222 KEIGSLRNLKELDLSSNKLGGVLPQ----EIENLKSLTALSMDANNLGGPIPSTL--FRL 275
++ L L L++ +LG L + E+ N S+ LS+ + L +T +
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKW 247
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
TN+ L L +N N L L L N + +L L +++ L+L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 336 LHSSIPLV----IGNFS-----ALSYLDLSDNRICGIIPDELT 369
SI L I +FS L +L++ DN I GI + T
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 138/353 (39%), Gaps = 31/353 (8%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
NL LDL NNL+ L L Y +L NN+ + L N+ L+L +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 162 NGTIPI---------EIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLS 212
+I + ++ LE L+++ N + G+ F L NL++L LS
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-------GLINLKYLSLS 361
Query: 213 SNKLS-GTIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
++ S T+ E SL + L L+L+ NK+ + L L L + N +G +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL--TGHIPSTLGRLTS 325
+R L NI + L +N++ + +L L L L PS L +
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481
Query: 326 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGII-------PDELTXXXXXXXXX 378
L ILDLS+N + + ++ L LDL N + + P
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541
Query: 379 XXXXXXXGQIPFAIGK-LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 430
+IP + K LF L +DL N L+ + N L++L L N
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 54 KDRIPQNTSDHCGWVGITCDYEGRITDIGLQK----------------------SNIKGE 91
K++I + SD W+G + D+GL + N +
Sbjct: 390 KNKISKIESDAFSWLG-----HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLR 149
L R +F+ P+LQ L L L S PS L NLT + L NN+ + L
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 150 NLEVLDLGSNNL-------NGTIPIE-IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI- 200
LE+LDL NNL N PI + + +L L+L+ N F IP+E+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG--------FDEIPVEVF 556
Query: 201 ESLRNLQWLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEI-ENLKSLTALS 258
+ L L+ +DL N L T+P + + + +LK L+L N + V + ++LT L
Sbjct: 557 KDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615
Query: 259 MDAN 262
M N
Sbjct: 616 MRFN 619
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
TNI L+L N+ LTSL +G N ++ P +L L++L+L N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 336 LHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKL 395
L + L+ L L N I I + PF K
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNN----------------------PFVKQK- 121
Query: 396 FNLASLDLSKNKLSGS 411
NL +LDLS N LS +
Sbjct: 122 -NLITLDLSHNGLSST 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 35/284 (12%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ NL+YL +LS S S + +L+N T++ L + NLT +I S
Sbjct: 359 FTGLINLKYL-----SLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 412
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRN 205
L +LEVLDLG N + + E + N+ + L NK + F +P SL+
Sbjct: 413 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP----SLQR 468
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL- 264
L ++ + + P LRNL LDLS+N + + +E L+ L L + NNL
Sbjct: 469 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Query: 265 --------GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGH 315
GGPI L L+++ L+L N F+ IP E+ +L L + LG N L
Sbjct: 528 RLWKHANPGGPI-YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 585
Query: 316 IPSTLGRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 358
S SL+ L+L N + S V G F L+ LD+ N
Sbjct: 586 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 136/343 (39%), Gaps = 42/343 (12%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H + D IT + L + ++ L NF+ + L LD+G N +S P
Sbjct: 23 HLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ K NL L L SN++ +NL TL L N
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Query: 184 KLSGVLPIYFGTIPI------------EIESLR----------NLQWLDLSSNKLSGTIP 221
LS GT +I++L+ +L+ L+LSSN++ P
Sbjct: 142 GLSST---KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
Query: 222 KEIGSLRNLKELDLSSNKLGGVLPQ----EIENLKSLTALSMDANNLGGPIPSTL--FRL 275
++ L L L++ +LG L + E+ N S+ LS+ + L +T +
Sbjct: 199 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKW 257
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
TN+ L L +N N L L L N + +L L +++ L+L +
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 336 LHSSIPLV----IGNFS-----ALSYLDLSDNRICGIIPDELT 369
SI L I +FS L +L++ DN I GI + T
Sbjct: 318 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 360
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 138/353 (39%), Gaps = 31/353 (8%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
NL LDL NNL+ L L Y +L NN+ + L N+ L+L +
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 162 NGTIPI---------EIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLS 212
+I + ++ LE L+++ N + G+ F L NL++L LS
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-------GLINLKYLSLS 371
Query: 213 SNKLS-GTIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
++ S T+ E SL + L L+L+ NK+ + L L L + N +G +
Sbjct: 372 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 431
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL--TGHIPSTLGRLTS 325
+R L NI + L +N++ + +L L L L PS L +
Sbjct: 432 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 491
Query: 326 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGII-------PDELTXXXXXXXXX 378
L ILDLS+N + + ++ L LDL N + + P
Sbjct: 492 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 551
Query: 379 XXXXXXXGQIPFAIGK-LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 430
+IP + K LF L +DL N L+ + N L++L L N
Sbjct: 552 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 39/239 (16%)
Query: 54 KDRIPQNTSDHCGWVGITCDYEGRITDIGLQKS-----------------NIKGELGRLN 96
K++I + SD W+G + + +IG + + N +L R +
Sbjct: 400 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 459
Query: 97 FSCFPNLQYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVL 154
F+ P+LQ L L L S PS L NLT + L NN+ + L LE+L
Sbjct: 460 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 519
Query: 155 DLGSNNL-------NGTIPIE-IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI-ESLRN 205
DL NNL N PI + + +L L+L+ N F IP+E+ + L
Sbjct: 520 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG--------FDEIPVEVFKDLFE 571
Query: 206 LQWLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEI-ENLKSLTALSMDAN 262
L+ +DL N L T+P + + + +LK L+L N + V + ++LT L M N
Sbjct: 572 LKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
TNI L+L N+ LTSL +G N ++ P +L L++L+L N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 336 LHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKL 395
L + L+ L L N I I + PF K
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNN----------------------PFVKQK- 131
Query: 396 FNLASLDLSKNKLSGS 411
NL +LDLS N LS +
Sbjct: 132 -NLITLDLSHNGLSST 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 35/284 (12%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN-----NLTGTIPKEIGS---- 147
F+ NL+YL +LS S S + +L+N T++ L + NLT +I S
Sbjct: 354 FTGLINLKYL-----SLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 407
Query: 148 -LRNLEVLDLGSNNLNGTIP-IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRN 205
L +LEVLDLG N + + E + N+ + L NK + F +P SL+
Sbjct: 408 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP----SLQR 463
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL- 264
L ++ + + P LRNL LDLS+N + + +E L+ L L + NNL
Sbjct: 464 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Query: 265 --------GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGH 315
GGPI L L+++ L+L N F+ IP E+ +L L + LG N L
Sbjct: 523 RLWKHANPGGPI-YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 580
Query: 316 IPSTLGRLTSLQILDLSSNQLHSSIPLVIG-NFSALSYLDLSDN 358
S SL+ L+L N + S V G F L+ LD+ N
Sbjct: 581 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 136/343 (39%), Gaps = 42/343 (12%)
Query: 64 HCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDS 123
H + D IT + L + ++ L NF+ + L LD+G N +S P
Sbjct: 18 HLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 124 LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGN 183
L L + L N L+ K NL L L SN++ +NL TL L N
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Query: 184 KLSGVLPIYFGTIPI------------EIESLR----------NLQWLDLSSNKLSGTIP 221
LS GT +I++L+ +L+ L+LSSN++ P
Sbjct: 137 GLSST---KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Query: 222 KEIGSLRNLKELDLSSNKLGGVLPQ----EIENLKSLTALSMDANNLGGPIPSTL--FRL 275
++ L L L++ +LG L + E+ N S+ LS+ + L +T +
Sbjct: 194 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKW 252
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
TN+ L L +N N L L L N + +L L +++ L+L +
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 312
Query: 336 LHSSIPLV----IGNFS-----ALSYLDLSDNRICGIIPDELT 369
SI L I +FS L +L++ DN I GI + T
Sbjct: 313 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 355
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 138/353 (39%), Gaps = 31/353 (8%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
NL LDL NNL+ L L Y +L NN+ + L N+ L+L +
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 162 NGTIPI---------EIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLS 212
+I + ++ LE L+++ N + G+ F L NL++L LS
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-------GLINLKYLSLS 366
Query: 213 SNKLS-GTIPKE-IGSLRN--LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
++ S T+ E SL + L L+L+ NK+ + L L L + N +G +
Sbjct: 367 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 426
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTG--HIPSTLGRLTS 325
+R L NI + L +N++ + +L L L L PS L +
Sbjct: 427 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 486
Query: 326 LQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGII-------PDELTXXXXXXXXX 378
L ILDLS+N + + ++ L LDL N + + P
Sbjct: 487 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 546
Query: 379 XXXXXXXGQIPFAIGK-LFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLNHN 430
+IP + K LF L +DL N L+ + N L++L L N
Sbjct: 547 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 54 KDRIPQNTSDHCGWVGITCDYEGRITDIGLQK----------------------SNIKGE 91
K++I + SD W+G + D+GL + N +
Sbjct: 395 KNKISKIESDAFSWLG-----HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 449
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSG--SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLR 149
L R +F+ P+LQ L L L S PS L NLT + L NN+ + L
Sbjct: 450 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 509
Query: 150 NLEVLDLGSNNL-------NGTIPIE-IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI- 200
LE+LDL NNL N PI + + +L L+L+ N F IP+E+
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG--------FDEIPVEVF 561
Query: 201 ESLRNLQWLDLSSNKLSGTIPKEIGSLR-NLKELDLSSNKLGGVLPQEI-ENLKSLTALS 258
+ L L+ +DL N L T+P + + + +LK L+L N + V + ++LT L
Sbjct: 562 KDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 620
Query: 259 MDAN 262
M N
Sbjct: 621 MRFN 624
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
TNI L+L N+ LTSL +G N ++ P +L L++L+L N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 336 LHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKL 395
L + L+ L L N I I + PF K
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNN----------------------PFVKQK- 126
Query: 396 FNLASLDLSKNKLSGS 411
NL +LDLS N LS +
Sbjct: 127 -NLITLDLSHNGLSST 141
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 210 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 269
DLS +K+ + +L++L L+ N++ + L L L++ N LG I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-ID 339
Query: 270 STLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 328
S +F L +E L L +N + + L NL L+L N+L RLTSLQ
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399
Query: 329 LDLSSNQLHSSIPLV 343
+ L +N S P +
Sbjct: 400 IWLHTNPWDCSCPRI 414
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLD 210
++ DL + + + +LE L+L N+++ + F L +L L+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-------GLTHLLKLN 329
Query: 211 LSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPS 270
LS N L + +L L+ LDLS N + + Q L +L L++D N L +P
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
Query: 271 TLF-RLTNIEYLSLGFNRFNGSIPR 294
+F RLT+++ + L N ++ S PR
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 71 TCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYI 130
TCD L KS I L + FS F +L+ L L N ++ + L++L +
Sbjct: 279 TCD---------LSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 131 YLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLP 190
L +N L + +L LEVLDL N++ + NL+ L+LD N+L V
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 191 IYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
F + L +LQ + L +N + P+
Sbjct: 389 GIF-------DRLTSLQKIWLHTNPWDCSCPR 413
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 111/295 (37%), Gaps = 44/295 (14%)
Query: 90 GELGRLNFSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSL 148
EL +FS +LQ+L + I + LS+L + L N L
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102
Query: 149 RNLEVLDLGSNNLNGTIPIE--IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL 206
NLEVL L NL+G + + +LE L L N + + P F ++R
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF------FLNMRRF 156
Query: 207 QWLDLSSNKLSGTIPKEIG---------------SLRNLKELDLSSNKLGGVLPQEIENL 251
LDL+ NK+ +++ +L+++ E L K G
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN----- 211
Query: 252 KSLTALSMDANNLGGPIPSTLFRL---TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLG 308
S+T L + N + F T I+ L L N +N N K+ + +
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS-NSYNMGSSFGHTNFKDPDNFTFK 270
Query: 309 GNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G + +G ++ DLS +++ + + V +F+ L L L+ N I I
Sbjct: 271 GLEASG-----------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 42/259 (16%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR- 173
+P+ I N Y+ L EN++ LR+LE+L L N + IE+G+
Sbjct: 27 AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK---IEVGAFNG 81
Query: 174 --NLETLSLDGNKLSGVLPIYFGTIPIE-IESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 230
+L TL L N+L+ T+P + E L L+ L L +N + + +L
Sbjct: 82 LPSLNTLELFDNRLT--------TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 231 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG 290
+ LDL E++ L+ ++ + + L N+ YL+LG
Sbjct: 134 RRLDLG----------ELKRLEYISEAAFEG-------------LVNLRYLNLGMCNLK- 169
Query: 291 SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSAL 350
IP + L L L L GN+L P + LTSL+ L L Q+ + + +L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 351 SYLDLSDNRICGIIPDELT 369
L+LS N + + D T
Sbjct: 229 EELNLSHNNLMSLPHDLFT 247
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ P+L L+L N L+ ++P+Q + LS L ++L N + + +L LD
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 156 LGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSN 214
LG L + NL L+L L IP + +L L+ L+LS N
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--------IP-NLTALVRLEELELSGN 188
Query: 215 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR 274
+L P L +L++L L ++ + ++LKSL L++ NNL +P LF
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFT 247
Query: 275 -LTNIEYLSLGFNRFN 289
L +E + L N ++
Sbjct: 248 PLHRLERVHLNHNPWH 263
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 50/264 (18%)
Query: 79 TDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLT 138
T + LQ ++I EL + +F +L L L +N +S L L +Y+ +N+L
Sbjct: 57 TLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 139 GTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL--SGVLPIYFGTI 196
P SL L + D N + +RN+ + + GN L SG P F +
Sbjct: 116 EIPPNLPSSLVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 197 PIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTA 256
L +L +S KL+G IPK++ L EL L NK+ + E+E+
Sbjct: 173 --------KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAI---ELED------ 212
Query: 257 LSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF----NGSIPREIVNLKNLTSLSLGGNKL 312
L R + + L LG N+ NGS+ L L L L NKL
Sbjct: 213 ---------------LLRYSKLYRLGLGHNQIRMIENGSLSF----LPTLRELHLDNNKL 253
Query: 313 TGHIPSTLGRLTSLQILDLSSNQL 336
+ +P+ L L LQ++ L +N +
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNI 276
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 195 TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSL 254
+P EI + LDL +N +S + L++L L L +NK+ + + L+ L
Sbjct: 47 AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 255 TALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL- 312
L + N+L IP L +++ L + NR +P+ + + L+N+ + +GGN L
Sbjct: 105 QKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 313 -TGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
+G P L L L +S +L + IP + L+ L L N+I I
Sbjct: 161 NSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP--ETLNELHLDHNKIQAI 208
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 77 RITDIGLQKSNIKG-ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
++ +GL + I+ E G L+F P L+ L L +N LS +P+ + L L +YL+ N
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
Query: 136 NLT 138
N+T
Sbjct: 275 NIT 277
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
L L WL+L N+L L L L L++N+L + ++L L L +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 260 DANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIP 317
N L +PS +F RLT ++ L L N+ SIP + L NL +LSL N+L
Sbjct: 115 GGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 318 STLGRLTSLQILDLSSNQLHSS 339
RL LQ + L NQ S
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCS 194
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 229 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 288
+ ++LDL S L + L LT L++D N L LT + L L N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 289 NGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 347
S+P + + L L L LGGN+L RLT L+ L L++NQL S
Sbjct: 96 -ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 348 SALSYLDLSDNRI 360
+ L L LS N++
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 196 IPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 255
IP + E L DL S L+ L L L+L N+L + ++L L
Sbjct: 33 IPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 256 ALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLT 313
L + ANN +P +F LT ++ L LG N+ S+P + + L L L L N+L
Sbjct: 87 TLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 314 GHIPSTLGRLTSLQILDLSSNQLHS 338
+LT+LQ L LS+NQL S
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
+ E LDL S L + L L+LD N+L + F + L L L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-------DDLTELGTL 88
Query: 210 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 269
L++N+L+ L L +L L N+L + + L L L ++ N L IP
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IP 147
Query: 270 STLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
+ F +LTN++ LSL N+ S+P + L L +++L GN+
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 91 ELGRLNFSCFPNLQYLD---LGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIG 146
+L L F +L LD LG N L S+PS + D L+ L + L N L
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL 206
L NL+ L L +N L + L+T++L GN+ F EI L
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ--------FDCSRCEILYLS-- 202
Query: 207 QWLDLSSNKLSGTIPKEIGSLRNLKE 232
QW+ +SNK+ G+ +NL E
Sbjct: 203 QWIRENSNKVKD------GTGQNLHE 222
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEI-ESLRNL 206
L L L+L N L + L TL L N+L+ ++P+ + + L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA--------SLPLGVFDHLTQL 109
Query: 207 QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGG 266
L L N+L L LKEL L++N+L + + L +L LS+ N L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 267 PIPSTLFRLTNIEYLSLGFNRFNGS 291
RL ++ ++L N+F+ S
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 7/144 (4%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F L +L+L N L D L+ L + L N L L L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL 216
G N L + L+ L L+ N+L + F + L NLQ L LS+N+L
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-------DKLTNLQTLSLSTNQL 167
Query: 217 SGTIPKEIGSLRNLKELDLSSNKL 240
L L+ + L N+
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
L L WL+L N+L L L L L++N+L + ++L L L +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 260 DANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIP 317
N L +PS +F RLT ++ L L N+ SIP + L NL +LSL N+L
Sbjct: 115 GGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 318 STLGRLTSLQILDLSSNQLHSS 339
RL LQ + L NQ S
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCS 194
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 229 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRF 288
+ ++LDL S L + L LT L++D N L LT + L L N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 289 NGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 347
S+P + + L L L LGGN+L RLT L+ L L++NQL S
Sbjct: 96 -ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 348 SALSYLDLSDNRI 360
+ L L LS N++
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 196 IPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 255
IP + E L DL S L+ L L L+L N+L + ++L L
Sbjct: 33 IPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 256 ALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLT 313
L + ANN +P +F LT ++ L LG N+ S+P + + L L L L N+L
Sbjct: 87 TLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 314 GHIPSTLGRLTSLQILDLSSNQLHS 338
+LT+LQ L LS+NQL S
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
+ E LDL S L + L L+LD N+L + F + L L L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-------DDLTELGTL 88
Query: 210 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 269
L++N+L+ L L +L L N+L + + L L L ++ N L IP
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IP 147
Query: 270 STLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLG-----R 322
+ F +LTN++ LSL N+ S+P + L L +++L GN+ TL R
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIR 206
Query: 323 LTSLQILDLSSNQLHSS 339
S ++ D + LH S
Sbjct: 207 ENSNKVKDGTGQNLHES 223
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 79/217 (36%), Gaps = 33/217 (15%)
Query: 231 KELDLSSNKLGGV---LPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 287
KE+D L V +P + E L + + L +T LT + +L+L +N+
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 288 FNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 347
+L L +L L N+L LT L L L NQL S V
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 348 SALSYLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNK 407
+ L L L+ N++ I A KL NL +L LS N+
Sbjct: 131 TKLKELRLNTNQLQSIPAG------------------------AFDKLTNLQTLSLSTNQ 166
Query: 408 LSGSIPTEIGNCSELRNLTLNHNSLNGKLAHTMVVTE 444
L +L+ +TL N + T+ +++
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQ 203
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 91 ELGRLNFSCFPNLQYLD---LGSNNLSGSIPSQI-DSLSNLTYIYLYENNLTGTIPKEIG 146
+L L F +L LD LG N L S+PS + D L+ L + L N L
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 147 SLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL 206
L NL+ L L +N L + L+T++L GN+ E+L
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS----------RCETLYLS 202
Query: 207 QWLDLSSNKLSGTIPKEIGSLRNLKE 232
QW+ +SNK+ G+ +NL E
Sbjct: 203 QWIRENSNKVKD------GTGQNLHE 222
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 7/144 (4%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F L +L+L N L D L+ L + L N L L L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL 216
G N L + L+ L L+ N+L + F + L NLQ L LS+N+L
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-------DKLTNLQTLSLSTNQL 167
Query: 217 SGTIPKEIGSLRNLKELDLSSNKL 240
L L+ + L N+
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 42/259 (16%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVR- 173
+P+ I N Y+ L EN++ LR+LE+L L N + IE+G+
Sbjct: 27 AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK---IEVGAFNG 81
Query: 174 --NLETLSLDGNKLSGVLPIYFGTIPIE-IESLRNLQWLDLSSNKLSGTIPKEIGSLRNL 230
+L TL L N+L+ T+P + E L L+ L L +N + + +L
Sbjct: 82 LPSLNTLELFDNRLT--------TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 231 KELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG 290
+ LDL E++ L+ ++ + + L N+ YL+LG
Sbjct: 134 RRLDLG----------ELKRLEYISEAAFEG-------------LVNLRYLNLGMCNLK- 169
Query: 291 SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSAL 350
IP + L L L L GN+L P + LTSL+ L L Q+ + + +L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 351 SYLDLSDNRICGIIPDELT 369
L+LS N + + D T
Sbjct: 229 EELNLSHNNLMSLPHDLFT 247
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ P+L L+L N L+ ++P+Q + LS L ++L N + + +L LD
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 156 LGS-NNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSN 214
LG L + NL L+L L IP + +L L+ L+LS N
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--------IP-NLTALVRLEELELSGN 188
Query: 215 KLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR 274
+L P L +L++L L ++ + ++LKSL L++ NNL +P LF
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFT 247
Query: 275 -LTNIEYLSLGFNRFN 289
L +E + L N ++
Sbjct: 248 PLHRLERVHLNHNPWH 263
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 117 IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLE 176
I + I LT +YL N+LT +P EI +L NL VLDL N L ++P E+GS L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 177 TLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
N ++ T+P E +L NLQ+L + N L K
Sbjct: 297 YFYFFDNMVT--------TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 19/117 (16%)
Query: 148 LRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQ 207
L NL++ ++ +N I L L L+GN L+ +P EI++L NL+
Sbjct: 231 LSNLQIFNISAN---------IFKYDFLTRLYLNGNSLT--------ELPAEIKNLSNLR 273
Query: 208 WLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
LDLS N+L+ ++P E+GS LK N + LP E NL +L L ++ N L
Sbjct: 274 VLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 268 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
I + +F+ + L L N +P EI NL NL L L N+LT +P+ LG L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
N + +++P GN L +L + N
Sbjct: 297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 42/137 (30%)
Query: 323 LTSLQILDLSSNQLH--------------SSIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
L++LQI ++S+N + +P I N S L LDLS NR+
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------ 284
Query: 369 TXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELRNLTLN 428
+P +G F L N ++ ++P E GN L+ L +
Sbjct: 285 -------------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324
Query: 429 HNSLNGKLAHTMVVTEK 445
N L + ++TEK
Sbjct: 325 GNPLEKQF--LKILTEK 339
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 141 IPKEIGSLRNLEVLDLGSNNLNGTIPIE--IGSVRNLETLSLDGNKLSGVLPIYFGTIPI 198
IP++I L E+L L N L G I + G + +L L L N+L+G+ P F
Sbjct: 23 IPRDI-PLHTTELL-LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF----- 74
Query: 199 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 258
E ++Q L L NK+ K L LK L+L N++ V+P E+L SLT+L+
Sbjct: 75 --EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 259 MDAN 262
+ +N
Sbjct: 133 LASN 136
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 65 CGWVGITCDYEGR-----ITDIGLQKSNI---KGELGRLN----FSCFPNLQYLDLGSNN 112
C G T D GR DI L + + ELGR++ F P+L L+L N
Sbjct: 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 113 LSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSV 172
L+G P+ + S++ + L EN + K L L+ L+L N ++ +P +
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 173 RNLETLSLDGN 183
+L +L+L N
Sbjct: 126 NSLTSLNLASN 136
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLK 252
FG +P +L L+L N+L+G P +++EL L NK+ + + L
Sbjct: 50 FGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102
Query: 253 SLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL 312
L L++ N + +P + L ++ L+L N FN + + L SL G
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAA 161
Query: 313 TGHIPSTLGRLTSLQILDLSSNQLHSS 339
PS ++ +QI DL ++ S
Sbjct: 162 RCGAPS---KVRDVQIKDLPHSEFKCS 185
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 299 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
L +L L L N+LTG P+ + +Q L L N++ + L L+L DN
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 359 RICGIIP 365
+I ++P
Sbjct: 113 QISCVMP 119
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
++Q L LG N + L L + LY+N ++ +P L +L L+L SN
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Query: 162 N 162
N
Sbjct: 139 N 139
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 20/261 (7%)
Query: 104 QYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
Q+L+L N G P+ ++ SL LT+ +N G E+ L +LE LDL N L+
Sbjct: 307 QHLEL-VNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEV-DLPSLEFLDLSRNGLS 360
Query: 163 --GTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
G +L+ L L N GV+ T+ L L+ LD + L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFN---GVI-----TMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 221 PKEIG-SLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG-GPIPSTLFRLTNI 278
+ SLRNL LD+S L SL L M N+ +P L N+
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 279 EYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 338
+L L + P +L +L L++ N L SLQ+LD S N + +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 339 SIPLVIGNF-SALSYLDLSDN 358
S + +F S+L++L+L+ N
Sbjct: 533 SKKQELQHFPSSLAFLNLTQN 553
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 101 PNLQYLDLGSNNLS-GSIPSQID-SLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158
P+L++LDL N LS SQ D ++L Y+ L N + T+ L LE LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 159 NNLNGTIPIEIG-SVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLS 217
+NL + S+RNL L + + F I L +L+ L ++ N
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTR----VAFNGI---FNGLSSLEVLKMAGNSFQ 458
Query: 218 -GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
+P LRNL LDLS +L + P +L SL L+M NN
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 154
Query: 210 DLSSNKLSGTIPKEIGSLRNL 230
DLSSNK+ ++ L +
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQM 175
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE-NLKSLTALSMDANNL 264
L++LDLS N + T+ L L+ LD + L + + +L++L L + +
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 265 GGPIPSTLFRLTNIEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRL 323
L+++E L + N F + +P L+NLT L L +L P+ L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 324 TSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+SLQ+L++S N S ++L LD S N I EL
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 40/250 (16%)
Query: 193 FGTIPIEIESLRNL------QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQ 246
F + + IE +++ Q L+L + K G P L++LK L +SNK GG
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFS 342
Query: 247 EIENLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTS 304
E++ L SL L + N L G + F T+++YL L FN ++ + L+ L
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH 400
Query: 305 LSLGGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC-G 362
L + L S L +L LD+S + + S+L L ++ N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 363 IIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSEL 422
+PD T +L NL LDLS+ +L PT + S L
Sbjct: 461 FLPDIFT------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 423 RNLTLNHNSL 432
+ L ++HN+
Sbjct: 497 QVLNMSHNNF 506
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 88
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 89 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 126
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F+ NL +LDL L P+ +SLS+L + + NN L +L+VLD
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 157 GSNNL 161
N++
Sbjct: 526 SLNHI 530
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 97 FSCFPNLQYLDLGSNNLSGS-IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ +L+ L + N+ + +P L NLT++ L + L P SL +L+VL+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNK 215
+ NN + +L+ L N + P +L +L+L+ N
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP------SSLAFLNLTQND 554
Query: 216 LSGTIPKE 223
+ T +
Sbjct: 555 FACTCEHQ 562
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 111/261 (42%), Gaps = 20/261 (7%)
Query: 104 QYLDLGSNNLSGSIPS-QIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
Q+L+L N G P+ ++ SL LT+ +N G E+ L +LE LDL N L+
Sbjct: 331 QHLEL-VNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEV-DLPSLEFLDLSRNGLS 384
Query: 163 GTIPIEIGSVRNLETLSLDGNKLS--GVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
S + T+SL LS GV+ T+ L L+ LD + L
Sbjct: 385 FK---GCCSQSDFGTISLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMS 436
Query: 221 PKEIG-SLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG-GPIPSTLFRLTNI 278
+ SLRNL LD+S L SL L M N+ +P L N+
Sbjct: 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 279 EYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS 338
+L L + P +L +L L++ N L SLQ+LD S N + +
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Query: 339 SIPLVIGNF-SALSYLDLSDN 358
S + +F S+L++L+L+ N
Sbjct: 557 SKKQELQHFPSSLAFLNLTQN 577
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE-NL 251
FGTI +L++LDLS N + T+ L L+ LD + L + + +L
Sbjct: 394 FGTI--------SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444
Query: 252 KSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGN 310
++L L + + L+++E L + N F + +P L+NLT L L
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 311 KLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+L P+ L+SLQ+L++S N S ++L LD S N I EL
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
LG +F FP LQ LDL + SLS+L+ + L N + L +
Sbjct: 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125
Query: 151 LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPIYFGTIPIEIESLRNLQWL 209
L+ L NL IG ++ L+ L++ N + LP YF +L NL+ L
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-------NLTNLEHL 178
Query: 210 DLSSNKLSGTIPKEIGSLRNL 230
DLSSNK+ ++ L +
Sbjct: 179 DLSSNKIQSIYCTDLRVLHQM 199
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 101 PNLQYLDLGSNNLS-GSIPSQIDSLS-NLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGS 158
P+L++LDL N LS SQ D + +L Y+ L N + T+ L LE LD
Sbjct: 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 429
Query: 159 NNLNGTIPIEIG-SVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL- 216
+NL + S+RNL L + + F I L +L+ L ++ N
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTR----VAFNGI---FNGLSSLEVLKMAGNSFQ 482
Query: 217 SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
+P LRNL LDLS +L + P +L SL L+M NN
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 123/309 (39%), Gaps = 57/309 (18%)
Query: 145 IGSLRN---LEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY--------F 193
+G RN LE D + L G + I R L+ L G++ ++ F
Sbjct: 258 LGEFRNEGNLEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDGIIDLFNCLTNVSSF 311
Query: 194 GTIPIEIESLRNL------QWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQE 247
+ + IE +++ Q L+L + K G P L++LK L +SNK GG E
Sbjct: 312 SLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFSE 367
Query: 248 IENLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSL 305
++ L SL L + N L G + F +++YL L FN ++ + L+ L L
Sbjct: 368 VD-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHL 425
Query: 306 SLGGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRIC-GI 363
+ L S L +L LD+S + + S+L L ++ N
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 364 IPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLSGSIPTEIGNCSELR 423
+PD T +L NL LDLS+ +L PT + S L+
Sbjct: 486 LPDIFT------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 424 NLTLNHNSL 432
L ++HN+
Sbjct: 522 VLNMSHNNF 530
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
LDLS N L S L+ LDLS ++ + ++L L+ L + G PI
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPI 112
Query: 269 PSTLFRLTNIEYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
S L+LG F+G S+ + + NL SL + P +G L +L
Sbjct: 113 QS----------LALG--AFSGLSSLQKLVAVETNLASLE--------NFP--IGHLKTL 150
Query: 327 QILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
+ L+++ N + S +P N + L +LDLS N+I I +L
Sbjct: 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F+ NL +LDL L P+ +SLS+L + + NN L +L+VLD
Sbjct: 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549
Query: 157 GSNNL 161
N++
Sbjct: 550 SLNHI 554
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 97 FSCFPNLQYLDLGSNNLSGS-IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ +L+ L + N+ + +P L NLT++ L + L P SL +L+VL+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 156 LGSNNL 161
+ NN
Sbjct: 525 MSHNNF 530
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 8/217 (3%)
Query: 154 LDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSS 213
L+L SN L + L LSL N LS + G +L++LDLS
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-----FKGCCSQSDFGTTSLKYLDLSF 87
Query: 214 NKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIE-NLKSLTALSMDANNLGGPIPSTL 272
N + T+ L L+ LD + L + + +L++L L + +
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 273 FRLTNIEYLSLGFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDL 331
L+++E L + N F + +P L+NLT L L +L P+ L+SLQ+L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 332 SSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
S N S ++L LD S N I EL
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIG-SLRNLEVLDLGSNN 160
+L+YLDL N + ++ S L L ++ +NL + SLRNL LD+ +
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLS-GVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGT 219
+ +LE L + GN LP F LRNL +LDLS +L
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLDLSQCQLEQL 190
Query: 220 IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
P SL +L+ L++S N + + L SL L N++
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 47/263 (17%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLT--GTIPKEIGSLRNLEVLDLGSNNLNG 163
L+L SN L D L+ LT + L N L+ G + +L+ LDL NG
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNG 89
Query: 164 TIPIE--IGSVRNLETLSLDGNKLSGV--LPIYFGTIPIEIESLRNLQWLDLSSNKLSGT 219
I + + LE L + L + ++ SLRNL +LD+S
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--------SLRNLIYLDISHTHTRVA 141
Query: 220 IPKEIGSLRNLKELDLSSNKLG-GVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNI 278
L +L+ L ++ N LP L++LT L + L P+ L+++
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 279 EYLSLGFNRFNG--SIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQL 336
+ L++ N F + P + +N SLQ+LD S N +
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLN--------------------------SLQVLDYSLNHI 235
Query: 337 HSSIPLVIGNF-SALSYLDLSDN 358
+S + +F S+L++L+L+ N
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQN 258
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 232 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG--GPIPSTLFRLTNIEYLSLGFNRFN 289
L+L SNKL + + L LT LS+ +N L G + F T+++YL L FN
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV- 90
Query: 290 GSIPREIVNLKNLTSLSLGGNKLTGHIP-STLGRLTSLQILDLSSNQLHSSIPLVIGNFS 348
++ + L+ L L + L S L +L LD+S + + S
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 349 ALSYLDLSDNRIC-GIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNK 407
+L L ++ N +PD T +L NL LDLS+ +
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFT------------------------ELRNLTFLDLSQCQ 186
Query: 408 LSGSIPTEIGNCSELRNLTLNHNSL 432
L PT + S L+ L ++HN+
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 97 FSCFPNLQYLDLGSNNLSGS-IPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLD 155
F+ +L+ L + N+ + +P L NLT++ L + L P SL +L+VL+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 156 LGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNK 215
+ NN + +L+ L N + P +L +L+L+ N
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP------SSLAFLNLTQND 259
Query: 216 LSGTIPKE 223
+ T +
Sbjct: 260 FACTCEHQ 267
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 222 KEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEY 280
+ + L LK ++ +L + + ++++L+ L + AN +PS LF L N+E
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLES 174
Query: 281 LSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSS 339
+ G N+ +PR I + L L+L N+L RLTSLQ + L +N S
Sbjct: 175 IEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 233
Query: 340 IPLV 343
P +
Sbjct: 234 CPRI 237
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI-GSL 227
+ +RNL L L N +P + + L NL+ ++ SNKL +P+ I G +
Sbjct: 143 LTDMRNLSHLELRANIEE--MPSHL------FDDLENLESIEFGSNKLR-QMPRGIFGKM 193
Query: 228 RNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNR 287
LK+L+L+SN+L V + L SL + + N P I+YLS N+
Sbjct: 194 PKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNK 246
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 183 NKLSGVLPIYFGT-----IPIEI-ESLRNLQWLDLSSNKLSGTIPKEI-GSLRNLKELDL 235
++L G+ F T IP + +RNL L+L +N +P + L NL+ ++
Sbjct: 120 DRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEF 177
Query: 236 SSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPR 294
SNKL + + L L++ +N L +P +F RLT+++ + L N ++ S PR
Sbjct: 178 GSNKLRQMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 120 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVPL 172
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 173 --ARLTKLQNLYLSKNHISDL 191
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 35/159 (22%)
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIP------- 221
I + N+ L L+GNKL+ + P+ +L+NL WL L NK+
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKPL---------ANLKNLGWLFLDENKVKDLSSLKDLKKL 112
Query: 222 ----------KEIGSLRNLKELD---LSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
+I L +L +L+ L +NK+ + + L L LS++ N + +
Sbjct: 113 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIV 170
Query: 269 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
P L RLT ++ L L N S R + LKNL L L
Sbjct: 171 P--LARLTKLQNLYLSKNHI--SDLRALRGLKNLDVLEL 205
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 41/187 (21%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 37 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 91
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 92 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 149
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
+ + L+TLSL+ N++ ++P + L LQ L LS N +S ++ +LR
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP---------LARLTKLQNLYLSKNHIS-----DLRALR 195
Query: 229 NLKELDL 235
LK LD+
Sbjct: 196 GLKNLDV 202
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 443 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDII 502
+EKCDV+S+G++ E++ R P + GP ++ + PP+ + + + I
Sbjct: 181 SEKCDVFSWGIILWEVITRRKPFD------EIGGPAFRIMWAVHNGTRPPLIKNLPKPI- 233
Query: 503 LVSTIAFACLSSQPKSRPTMQRI 525
++ C S P RP+M+ I
Sbjct: 234 --ESLMTRCWSKDPSQRPSMEEI 254
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 119 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 171
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 172 --AGLTKLQNLYLSKNHISDL 190
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 38/174 (21%)
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 53 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 107
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 165
Query: 186 SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
S ++P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 166 SDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 443 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDII 502
+EKCDV+S+G++ E++ R P + GP ++ + PP+ + + + I
Sbjct: 182 SEKCDVFSWGIILWEVITRRKPFD------EIGGPAFRIMWAVHNGTRPPLIKNLPKPI- 234
Query: 503 LVSTIAFACLSSQPKSRPTMQRI 525
++ C S P RP+M+ I
Sbjct: 235 --ESLMTRCWSKDPSQRPSMEEI 255
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 19/233 (8%)
Query: 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGS---VRNLETLSLD 181
SN Y+ L ENN+ L +LEVL LG N++ IE+G+ + +L TL L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELF 131
Query: 182 GNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSS-NKL 240
N L+ V+P E L L+ L L +N + + +L LDL KL
Sbjct: 132 DNWLT-VIP------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 241 GGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLK 300
+ E L +L L++ N+ +P+ L L +E L + N F P L
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 301 NLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYL 353
+L L + ++++ + L SL L+L+ N L SS+P + F+ L YL
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDL--FTPLRYL 292
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP----KEIGSLRNL- 151
F +L+ L LG N++ + L++L + L++N LT IP + + LR L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153
Query: 152 -------EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYF---GTIPIE-- 199
+ N + + +++G ++ LE +S G+ + + G I+
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDM 211
Query: 200 --IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 257
+ L L+ L++S N P L +LK+L + ++++ + + L SL L
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 258 SMDANNLGGPIPSTLFRLTNIEYL 281
++ NNL +P LF T + YL
Sbjct: 272 NLAHNNLSS-LPHDLF--TPLRYL 292
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 98/249 (39%), Gaps = 43/249 (17%)
Query: 125 SNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184
+N + L+EN + LR+LE+L L N++ IEIG+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT---IEIGA------------- 107
Query: 185 LSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK-EIGSLRNLKELDLSSNKLGGV 243
L NL L+L N+L+ TIP L LKEL L +N + +
Sbjct: 108 ---------------FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI 151
Query: 244 LPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLK-- 300
+ SL L + I F L+N+ YL+L REI NL
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-----REIPNLTPL 206
Query: 301 -NLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNR 359
L L L GN L+ P + L LQ L + +Q+ N +L ++L+ N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266
Query: 360 ICGIIPDEL 368
+ ++P +L
Sbjct: 267 L-TLLPHDL 274
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP----------KEIG 146
F +L+ L L N++ + L+NL + L++N LT TIP KE+
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142
Query: 147 SLRNLEVLDLGSNNLNGTIP----IEIGSVRNLETLS------LDGNKLSGVLPIYFGTI 196
LRN + + S N IP +++G ++ L +S L + + I
Sbjct: 143 -LRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200
Query: 197 PIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTA 256
P + L L LDLS N LS P L +L++L + +++ + +NL+SL
Sbjct: 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 257 LSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFN 289
+++ NNL +P LF L ++E + L N +N
Sbjct: 260 INLAHNNLTL-LPHDLFTPLHHLERIHLHHNPWN 292
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 174
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 175 --AGLTKLQNLYLSKNHISDL 193
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 93
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 94 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 151
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
+ + L+TLSL+ N++S ++P + L LQ L LS N +S + + L+
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLK 200
Query: 229 NLKELDLSSNK 239
NL L+L S +
Sbjct: 201 NLDVLELFSQE 211
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 120 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 172
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 173 --AGLTKLQNLYLSKNHISDL 191
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 37 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 91
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 92 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 149
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
+ + L+TLSL+ N++S ++P + L LQ L LS N +S + + L+
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLK 198
Query: 229 NLKELDLSSNK 239
NL L+L S +
Sbjct: 199 NLDVLELFSQE 209
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 116
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 117 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 169
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 170 AC--LTKLQNLYLSKNHISDL 188
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 88
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 89 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 146
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
+ + L+TLSL+ N++S ++P + L LQ L LS N +S + + L+
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP---------LACLTKLQNLYLSKNHISDL--RALCGLK 195
Query: 229 NLKELDLSSNK 239
NL L+L S +
Sbjct: 196 NLDVLELFSQE 206
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 38/292 (13%)
Query: 75 EGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYE 134
E + I LQK + F CF LQ LDL + +LS
Sbjct: 253 EMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-------------------- 291
Query: 135 NNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFG 194
+P + L L+ L L +N I + +L LS+ GN + L + G
Sbjct: 292 -----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLELGTG 344
Query: 195 TIPIEIESLRNLQWLDLSSNKL--SGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLK 252
+ E+L NL+ LDLS + + S ++ +L +L+ L+LS N+ + + +
Sbjct: 345 CL----ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 253 SLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 311
L L + L + F+ L ++ L+L + + S + L L L+L GN
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 312 L-TGHIPST--LGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
G+I T L L L+IL LS L S + ++++DLS NR+
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 41/239 (17%)
Query: 127 LTYIYLYENNLTG-TIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLD--GN 183
L +YL N+++ +PK + L+VLD +N ++ ++ S++ LSL+ GN
Sbjct: 131 LESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189
Query: 184 KLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI--GSLRNLKELDLSSNKLG 241
++G+ P F + + + Q L + L + + + G+ ++ + D+S
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 242 GVLPQEIE--NLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNL 299
G+ +E NL+ ++ +N F+ F+G
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNT---------------------FHCFSG--------- 279
Query: 300 KNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
L L L L+ +PS L L++L+ L LS+N+ + + NF +L++L + N
Sbjct: 280 --LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 174
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 175 --AGLTKLQNLYLSKNHISDL 193
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 69 GITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLT 128
+T + I I S+IK G PN+ L L N L+ P + +L NL
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 93
Query: 129 YIYLYENNLTGTIPKE--------------------IGSLRNLEVLDLGSNNLNGTIPIE 168
+++L EN + + + L LE L LG+N + T
Sbjct: 94 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITV 151
Query: 169 IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
+ + L+TLSL+ N++S ++P + L LQ L LS N +S + + L+
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLK 200
Query: 229 NLKELDLSSNK 239
NL L+L S +
Sbjct: 201 NLDVLELFSQE 211
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
+ L N + P + L+ +DLS+N++ + P + L+SL +L + N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-L 95
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
P +LF L +++ L L N+ N +L NL LSL NKL T L ++Q
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 328 ILDLSSN 334
+ L+ N
Sbjct: 156 TMHLAQN 162
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
G I + IT+I L+++ IK + FS + L+ +DL +N +S P L
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 126 NLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184
+L + LY N +T +PK + L +L++L L +N +N + NL LSL NK
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 185 LSGVLPIYFGTIPIEIESLRNLQWLDLSSN 214
L + F LR +Q + L+ N
Sbjct: 140 LQTIAKGTFS-------PLRAIQTMHLAQN 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
+ L N + P + L+ +DLS+N++ + P + L+SL +L + N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-L 95
Query: 269 PSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
P +LF L +++ L L N+ N +L NL LSL NKL T L ++Q
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 328 ILDLSSN 334
+ L+ N
Sbjct: 156 TMHLAQN 162
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 66 GWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLS 125
G I + IT+I L+++ IK + FS + L+ +DL +N +S P L
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 126 NLTYIYLYENNLTGTIPKEI-GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNK 184
+L + LY N +T +PK + L +L++L L +N +N + NL LSL NK
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 185 LSGVLPIYFGTIPIEIESLRNLQWLDLSSN 214
L + F LR +Q + L+ N
Sbjct: 140 LQTIAKGTFS-------PLRAIQTMHLAQN 162
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 116
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 117 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 169
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 170 --AGLTKLQNLYLSKNHISDL 188
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 38/207 (18%)
Query: 53 WKDRIPQNTSDHCGWVGITCDYEGRITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNN 112
+ + I N +T + I I S+IK G PN+ L L N
Sbjct: 18 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 74
Query: 113 LSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE--------------------IGSLRNLE 152
L+ P + +L NL +++L EN + + + L LE
Sbjct: 75 LTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 132
Query: 153 VLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLS 212
L LG+N + T + + L+TLSL+ N++S ++P + L LQ L LS
Sbjct: 133 SLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP---------LAGLTKLQNLYLS 181
Query: 213 SNKLSGTIPKEIGSLRNLKELDLSSNK 239
N +S + + L+NL L+L S +
Sbjct: 182 KNHISDL--RALAGLKNLDVLELFSQE 206
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 232 ELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNG 290
L+L SNKL + + L LT LS+ N + +P +F +LT + L L N+
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ- 89
Query: 291 SIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 343
S+P + + L L L+L N+L RLTSLQ + L +N S P +
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGT 219
N G + G + L L+ NKL + F + L L L LS N++
Sbjct: 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-------DKLTQLTKLSLSQNQIQSL 67
Query: 220 IPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNI 278
L L L L NKL + + L L L++D N L +P +F RLT++
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSL 126
Query: 279 EYLSLGFNRFNGSIPR 294
+ + L N ++ S PR
Sbjct: 127 QKIWLHTNPWDCSCPR 142
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 253 SLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGN 310
S T L +++N L +P +F +LT + LSL N+ S+P + + L LT L L N
Sbjct: 29 SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86
Query: 311 KLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
KL +LT L+ L L +NQL S + ++L + L N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 268 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKLTGHIPSTLGRLTSL 326
IPS+ RL L N+ S+P + + L LT LSL N++ +LT L
Sbjct: 26 IPSSATRL------ELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 327 QILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPD 366
IL L N+L S V + L L L N++ +PD
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPD 117
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 20/128 (15%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
F L L L N + D L+ LT +YL+EN L L L+ L L
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
Query: 157 GSNNLNGTIPIEIGSVRNLETLSLDG--NKLSGVLPIYFGTIPIEIESLRN---LQWLDL 211
+N L ++P DG ++L+ + I+ T P + R +WL+
Sbjct: 108 DTNQLK-SVP--------------DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 152
Query: 212 SSNKLSGT 219
+S K G+
Sbjct: 153 NSQKEQGS 160
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 106 LDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTI 165
L+L SN L D L+ LT + L +N + L L +L L N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 166 PIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L+ L+LD N+L V F + L +LQ + L +N + P+
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIF-------DRLTSLQKIWLHTNPWDCSCPR 142
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 140 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 193 --AGLTKLQNLYLSKNHISDL 211
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 44/234 (18%)
Query: 26 HVASATNISIHVAASEIERQALLNSGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQK 85
H+AS T I++ +I A + + I N +T + I I
Sbjct: 20 HMASET-ITVSTPIKQIFPDA-----AFAETIKANLKKKSVTDAVTQNELNSIDQIIANN 73
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 74 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 128
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 129 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 186
Query: 186 SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
S ++P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 187 SDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 140 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 193 --AGLTKLQNLYLSKNHISDL 211
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 44/234 (18%)
Query: 26 HVASATNISIHVAASEIERQALLNSGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQK 85
H+AS T I++ +I A + + I N +T + I I
Sbjct: 20 HMASET-ITVSTPIKQIFPDA-----AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANN 73
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 74 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 128
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 129 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 186
Query: 186 SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
S ++P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 187 SDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 224 IGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSL 283
I L N+ +L L+ NKL + P + NLK+L L +D N + + L
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 284 -GFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL 342
G + NG +V+L L SL LG NK+T + L RLT L L L NQ+ +PL
Sbjct: 140 NGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 343 VIGNFSALSYLDLSDNRICGI 363
+ L L LS N I +
Sbjct: 193 --AGLTKLQNLYLSKNHISDL 211
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 44/234 (18%)
Query: 26 HVASATNISIHVAASEIERQALLNSGWWKDRIPQNTSDHCGWVGITCDYEGRITDIGLQK 85
H+AS T I++ +I + + I N +T + I I
Sbjct: 20 HMASET-ITVSTPIKQI-----FPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANN 73
Query: 86 SNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKE- 144
S+IK G PN+ L L N L+ P + +L NL +++L EN + +
Sbjct: 74 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 128
Query: 145 -------------------IGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL 185
+ L LE L LG+N + T + + L+TLSL+ N++
Sbjct: 129 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 186
Query: 186 SGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNK 239
S ++P + L LQ L LS N +S + + L+NL L+L S +
Sbjct: 187 SDIVP---------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 229
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 229 NLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN---NLGGPIPSTLFRLTNIEYLSLGF 285
NLKEL LS N++ + P +++L L LS++ N NL G IPS + L L
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG-IPSAC-----LSRLFLDN 115
Query: 286 NRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIG 345
N + +++LKNL LS+ NKL + LG L+ L++LDL N++ ++ L
Sbjct: 116 NELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGGLT-- 169
Query: 346 NFSALSYLDLSDNR 359
++++DL+ +
Sbjct: 170 RLKKVNWIDLTGQK 183
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 106 LDLGSNNLSGSIPSQIDS-LSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGT 164
LDL NNLS + L+NL + L N+L + + NL LDL SN+L+
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 165 IPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEI 224
++ LE L L N + V F E + LQ L LS N++S P E+
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAF-------EDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 225 ----GSLRNLKELDLSSNKLGGVLPQEIENL 251
L L LDLSSNKL + +++ L
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 28/116 (24%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
PNL+YLDL SN+L L L + LY N++ + L+ L L N
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKL 216
+ P+E+ DGNKL ++ LDLSSNKL
Sbjct: 148 I-SRFPVELIK---------DGNKLPKLM------------------LLDLSSNKL 175
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 299 LKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDN 358
L NL SL L N L + +L+ LDLSSN LH+ + + AL L L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 359 RICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAI----GKLFNLASLDLSKNKL 408
I ++ + P + KL L LDLS NKL
Sbjct: 123 HIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 203 LRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDAN 262
L NL L LS N L+ + + NL+ LDLSSN L + +L++L L + N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 263 NLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR 322
++ + + ++ L L N+ P E++ GNK
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIK---------DGNK----------- 161
Query: 323 LTSLQILDLSSNQLHSSIPLV 343
L L +LDLSSN+L +PL
Sbjct: 162 LPKLMLLDLSSNKL-KKLPLT 181
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 202 SLRNLQWLDLSSNKLSGTIPKEI--GSLRNLKELDLSSNKLGG-VLPQEIENLKSLTALS 258
+L+ LQ L L N L + ++ +L+ LD+S N L + +S+ L+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 259 MDANNLGGPIPSTLFRL--TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHI 316
+ +N L G ++FR ++ L L NR SIP+++ +L+ L L++ N+L
Sbjct: 435 LSSNMLTG----SVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 317 PSTLGRLTSLQILDLSSNQLHSSIP 341
RLTSLQ + L N + P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 133 YENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGV-LPI 191
Y N +PK++ + L L N+++ +I + L L L N++ + +
Sbjct: 38 YSNRNLTHVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLP--QEIE 249
+ ++L++LD+S N+L + SLR+ LDLS N VLP +E
Sbjct: 96 FLFN--------QDLEYLDVSHNRLQNISCCPMASLRH---LDLSFNDF-DVLPVCKEFG 143
Query: 250 NLKSLTALSMDA 261
NL LT L + A
Sbjct: 144 NLTKLTFLGLSA 155
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 27/127 (21%)
Query: 106 LDLGSNNLSGSI----PSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNL 161
L+L SN L+GS+ P ++ L NN +IPK++ L+ L+ L++ SN L
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLD-------LHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 162 NGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL-QWLDLSSNKLSGTI 220
+ +L+ + L N P +R L +W+ NK SG +
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----------GIRYLSEWI----NKHSGVV 530
Query: 221 PKEIGSL 227
GS+
Sbjct: 531 RNSAGSV 537
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIP 142
LQ L++ SN L D L++L YI+L++N T P
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 105 YLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI--GSLRNLEVLDLGSNNLN 162
+L+ N + S+ +L L + L N L + ++ +LE LD+ N+LN
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 163 G-TIPIEIGSVRNLETLSLDGNKLSG-----------VLPIY---FGTIPIEIESLRNLQ 207
++ L+L N L+G VL ++ +IP ++ L+ LQ
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQ 476
Query: 208 WLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLP 245
L+++SN+L L +L+ + L N P
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 199 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 258
+++ NLQ L L+SN ++ SL +L+ LDLS N L + + L SLT L+
Sbjct: 45 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 104
Query: 259 MDANNLGGPIPSTLF-RLTNIEYLSLG-FNRFNGSIPREIVNLKNLTSLSLGGNKLTGHI 316
+ N ++LF LT ++ L +G + F ++ L L L + + L +
Sbjct: 105 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 164
Query: 317 PSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSD 357
P +L + ++ L L Q + + + S++ L+L D
Sbjct: 165 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 205
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 230 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 289
+K LDLS+N++ + +++ +L AL + +N + + L ++E+L L +N +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 290 GSIPREIVNLKNLTSLSLGGN--KLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 347
L +LT L+L GN K G S LT LQIL + + + I +F
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQR--KDF 144
Query: 348 SALSYLD 354
+ L++L+
Sbjct: 145 AGLTFLE 151
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
++ LDL +N ++ S + NL + L N + SL +LE LDL N L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 163 GTIPIEIGSVRNLETLSLDGN--KLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
+ +L L+L GN K G ++ ++I + N+ + +
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM-------DTFTKIQ 140
Query: 221 PKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 257
K+ L L+EL++ ++ L P+ ++++++++ L
Sbjct: 141 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 10/227 (4%)
Query: 199 EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALS 258
+++ NLQ L L+SN ++ SL +L+ LDLS N L + + L SLT L+
Sbjct: 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130
Query: 259 MDANNLGGPIPSTLF-RLTNIEYLSLG-FNRFNGSIPREIVNLKNLTSLSLGGNKLTGHI 316
+ N ++LF LT ++ L +G + F ++ L L L + + L +
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 317 PSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGIIPDELTXXXXXXX 376
P +L + ++ L L Q + + + S++ L+L D + EL+
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 377 XXXXX---XXXXGQIPFAIGKLFN----LASLDLSKNKLSGSIPTEI 416
+ F + KL N L L+ S+N+L S+P I
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 230 LKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFN 289
+K LDLS+N++ + +++ +L AL + +N + + L ++E+L L +N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 290 GSIPREIVNLKNLTSLSLGGN--KLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNF 347
L +LT L+L GN K G S LT LQIL + + + I +F
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQR--KDF 170
Query: 348 SALSYLD 354
+ L++L+
Sbjct: 171 AGLTFLE 177
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 210 DLSSNKLSGTIPKEIGSLRNLKELDLSSNK---LGGVLP-QEIENLKSLTALSMDANNLG 265
+LS N++SG + NLK L+LS NK L + P +++ENLKSL + + NL
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 134
Query: 266 GPIPSTLFRLTNIEYLSLGFNRFNGSIP 293
+ L + YL G++R N P
Sbjct: 135 AYRENVFKLLPQVMYLD-GYDRDNKEAP 161
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 196 IPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 255
+P + L+ L L+ N L +P I SL L+EL + + P+ E + L
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRA------CPELTELPEPLA 171
Query: 256 ALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGH 315
+ + G L N++ L L + S+P I NL+NL SL + + L+
Sbjct: 172 STDASGEHQG---------LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221
Query: 316 IPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSD 357
P+ + L L+ LDL + P + G + L L L D
Sbjct: 222 GPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 30/236 (12%)
Query: 116 SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNL 175
P Q LS+L + + L +P LE L L N L +P I S+ L
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 176 ETLSLDGNKLSGVLPIYFGTIPI--EIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKEL 233
LS+ LP + E + L NLQ L L + ++P I +L+NLK L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211
Query: 234 DLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIP 293
+ ++ L + P I +L L L + T R Y + F G P
Sbjct: 212 KIRNSPLSALGP-AIHHLPKLEELDLRG--------CTALR----NYPPI----FGGRAP 254
Query: 294 REIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSA 349
+ + LK+ ++L LT +P + RLT L+ LDL S +P +I A
Sbjct: 255 LKRLILKDCSNL------LT--LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 102 NLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL-GSNN 160
NLQ L L + S+P+ I +L NL + + + L+ P I L LE LDL G
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTA 241
Query: 161 LNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDL 211
L PI G L+ L L S +L T+P++I L L+ LDL
Sbjct: 242 LRNYPPI-FGGRAPLKRLIL--KDCSNLL-----TLPLDIHRLTQLEKLDL 284
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
++S R ++ L+L+ ++ +++L + N + + P +N+ LT L +
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 260 DANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPS 318
+ N+L S+PR I N LT+LS+ N L
Sbjct: 125 ERNDLS-------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
Query: 319 TLGRLTSLQILDLSSNQL-HSSIPLVIGNFSA 349
T TSLQ L LSSN+L H + L+ F A
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 29/250 (11%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLR 149
E+ F+ +Q L +G N + P ++ LT + L N+L+ ++P+ I +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
L L + +NNL + +L+ L L N+L+ V ++ + +L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPSLFHA 191
Query: 210 DLSSNKLSG-TIPKEIGSLRNLKELDLSSNKLGGVL-PQEIENLKSLTALSMDANNLGGP 267
++S N LS IP + +ELD S N + V P +E LT L + NNL
Sbjct: 192 NVSYNLLSTLAIPIAV------EELDASHNSINVVRGPVNVE----LTILKLQHNNLTD- 240
Query: 268 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSL 326
+ L + + L +N + V ++ L L + N+L + G+ + +L
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTL 297
Query: 327 QILDLSSNQL 336
++LDLS N L
Sbjct: 298 KVLDLSHNHL 307
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 27/199 (13%)
Query: 78 ITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNL 137
+T + L+++++ L R F P L L + +NNL + ++L + L N L
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 138 TGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIP 197
T I SL + V S NL T+ I I +E L N ++ V P
Sbjct: 178 THVDLSLIPSLFHANV----SYNLLSTLAIPIA----VEELDASHNSINVVRG------P 223
Query: 198 IEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTAL 257
+ +E L L L N L+ T + + L E+DLS N+L ++ ++ L L
Sbjct: 224 VNVE----LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277
Query: 258 SMDANNL------GGPIPS 270
+ N L G PIP+
Sbjct: 278 YISNNRLVALNLYGQPIPT 296
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 167 IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGS 226
+ G + + L L+ N+++ + P F + L NLQ L +SNKL+
Sbjct: 27 VPAGIPTDKQRLWLNNNQITKLEPGVF-------DHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 227 LRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
L L +LDL+ N L + +NLKSLT + +
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 191 IYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIEN 250
I ++P I + + WL+ +N+++ P L NL++L +SNKL + +
Sbjct: 22 IRLASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 251 LKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGSIPREIVNLKNLTS 304
L LT L ++ N+L IP F L ++ ++ L N ++ R+I+ L+N +
Sbjct: 80 LTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC-RDIMYLRNWVA 132
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
T+ + L L N+ P +L NL L NKLT +LT L LDL+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 336 LHSSIPLVIGNFSALSYLDLSDN 358
L S N +L+++ L +N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG 163
Q L L +N ++ P D L NL +Y N LT L L LDL N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 164 TIPIEIGSVRNLETLS 179
I G+ NL++L+
Sbjct: 96 ---IPRGAFDNLKSLT 108
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 290 GSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPL-VIGNFS 348
S+P I K L L N++T P L +LQ L +SN+L ++IP V +
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLT 81
Query: 349 ALSYLDLSDNRI 360
L+ LDL+DN +
Sbjct: 82 QLTQLDLNDNHL 93
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRN 150
F L LDL N+L D+L +LT+IYLY NN ++I LRN
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY-NNPWDCECRDIMYLRN 129
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 110/292 (37%), Gaps = 44/292 (15%)
Query: 90 GELGRLNFSCFPNLQYLDLGSNNLSGSIPSQ-IDSLSNLTYIYLYENNLTGTIPKEIGSL 148
EL +FS +LQ+L + I + LS+L + L N L
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102
Query: 149 RNLEVLDLGSNNLNGTIPIE--IGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNL 206
NLEVL L NL+G + + +LE L L N + + P F ++R
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF------FLNMRRF 156
Query: 207 QWLDLSSNKLSGTIPKEIG---------------SLRNLKELDLSSNKLGGVLPQEIENL 251
LDL+ NK+ +++ +L+++ E L K G
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN----- 211
Query: 252 KSLTALSMDANNLGGPIPSTLFRL---TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLG 308
S+T L + N + F T I+ L L N +N N K+ + +
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS-NSYNMGSSFGHTNFKDPDNFTFK 270
Query: 309 GNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
G + +G ++ DLS +++ + + V +F+ L L L+ N I
Sbjct: 271 GLEASG-----------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 210 DLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIP 269
DLS +K+ + +L++L L+ N++ + L L L++D N L +P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VP 339
Query: 270 STLF-RLTNIEYLSLGFNRFNGSIPR 294
+F RLT+++ + L N ++ S PR
Sbjct: 340 DGIFDRLTSLQKIWLHTNPWDCSCPR 365
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 27/271 (9%)
Query: 97 FSCFPNLQYLDLGSNNLSGSIPSQ--IDSLSNLTYIYLYENNLTGTIPKEIG-SLRNLEV 153
F+ NL+ L L NL G++ S L++L + L +NN+ P ++R V
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 154 LDLGSNNLNGTIPIEIGSV--RNLETLSLDGNKLSGVLPIYFGTI----PIEIESLRNLQ 207
LDL N + ++ + ++ L L L + + G P + S+ L
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL- 217
Query: 208 WLDLSSNKLSGTIPKEIGSL---RNLKELDLSSN-----KLGGVLPQEIENL--KSLTAL 257
DLS N ++ K ++ L LS++ G ++ +N K L A
Sbjct: 218 --DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275
Query: 258 SMDANNLGGP-----IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKL 312
+ +L + S T++E L+L N N L +L L+L N+L
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQL 335
Query: 313 TGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 343
RLTSLQ + L +N S P +
Sbjct: 336 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 366
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
++S R ++ L+L+ ++ +++L + N + + P +N+ LT L +
Sbjct: 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130
Query: 260 DANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIV-NLKNLTSLSLGGNKLTGHIPS 318
+ N+L S+PR I N LT+LS+ N L
Sbjct: 131 ERNDLS-------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDD 165
Query: 319 TLGRLTSLQILDLSSNQL-HSSIPLVIGNFSA-LSY 352
T TSLQ L LSSN+L H + L+ F A +SY
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 29/250 (11%)
Query: 91 ELGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEI-GSLR 149
E+ F+ +Q L +G N + P ++ LT + L N+L+ ++P+ I +
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147
Query: 150 NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
L L + +NNL + +L+ L L N+L+ V IP +L
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP-------SLFHA 197
Query: 210 DLSSNKLSG-TIPKEIGSLRNLKELDLSSNKLGGVL-PQEIENLKSLTALSMDANNLGGP 267
++S N LS IP + +ELD S N + V P +E LT L + NNL
Sbjct: 198 NVSYNLLSTLAIPIAV------EELDASHNSINVVRGPVNVE----LTILKLQHNNLTD- 246
Query: 268 IPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGR-LTSL 326
+ L + + L +N + V ++ L L + N+L + G+ + +L
Sbjct: 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTL 303
Query: 327 QILDLSSNQL 336
++LDLS N L
Sbjct: 304 KVLDLSHNHL 313
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
NL + + NL+TL L N L + +FG+ + L WL
Sbjct: 160 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 209
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 24/167 (14%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 44 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 91
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 92 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 145
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPR 294
L LS+ NNL +P+ L L N++ L L N +IP+
Sbjct: 146 TPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK 190
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 247 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 306
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 6 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 62
Query: 307 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 63 LDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 116
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 194 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 253
GT+P+ L LDLS N+L ++P +L L LD+S N+L + + L
Sbjct: 75 GTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 126
Query: 254 LTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
L L + N L P L +E LSL N +P ++N L+NL +L L N L
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 57 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 111
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+ LP
Sbjct: 112 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAG 167
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 168 L------LNGLENLDTLLLQENSLY-TIPK 190
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
NL + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
L LS+ NNL +P+ L L N++ L L N +IP+ L L
Sbjct: 145 TPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 308 GGN 310
GN
Sbjct: 203 HGN 205
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 194 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 253
GT+P+ L LDLS N+L ++P +L L LD+S N+L + + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 254 LTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
L L + N L P L +E LSL N +P ++N L+NL +L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
L LS+ ANN +P+ L L N++ L L N +IP+ L L
Sbjct: 145 TPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 308 GGN 310
GN
Sbjct: 203 HGN 205
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
L + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 205 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 265 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 324
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 325 SLQILDLSSNQLHS 338
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
NL + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 24/167 (14%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPR 294
L LS+ NNL +P+ L L N++ L L N +IP+
Sbjct: 145 TPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 247 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 306
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 61
Query: 307 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 62 LDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 194 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 253
GT+P+ L LDLS N+L ++P +L L LD+S N+L + + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 254 LTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
L L + N L P L +E LSL N +P ++N L+NL +L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L ++ EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
L LS+ ANN +P+ L L N++ L L N +IP+ L L
Sbjct: 145 TPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 308 GGN 310
GN
Sbjct: 203 HGN 205
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
L + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 205 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 265 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 324
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 325 SLQILDLSSNQLHS 338
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
NL + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 24/167 (14%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPR 294
L LS+ NNL +P+ L L N++ L L N +IP+
Sbjct: 145 TPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 247 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 306
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 61
Query: 307 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 62 LDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 194 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 253
GT+P+ L LDLS N+L ++P +L L LD+S N+L + + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 254 LTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
L L + N L P L +E LSL N +P ++N L+NL +L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L ++ EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
L LS+ ANN +P+ L L N++ L L N +IP+ L L
Sbjct: 145 TPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 308 GGN 310
GN
Sbjct: 203 HGN 205
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
L + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 205 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 265 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 324
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 325 SLQILDLSSNQLHS 338
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
NL + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 24/167 (14%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPR 294
L LS+ NNL +P+ L L N++ L L N +IP+
Sbjct: 145 TPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 247 EIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLS 306
E+ + S ++ D NL +P L + T I +LS + S+ ++ LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLN 61
Query: 307 LGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
L +LT G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 62 LDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 194 GTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKS 253
GT+P+ L LDLS N+L ++P +L L LD+S N+L + + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 254 LTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVN-LKNLTSLSLGGNKL 312
L L + N L P L +E LSL N +P ++N L+NL +L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L ++ EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
L LS+ ANN +P+ L L N++ L L N +IP+ L L
Sbjct: 145 TPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 308 GGN 310
GN
Sbjct: 203 HGN 205
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
L + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 205 NLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNL 264
NL +L+ ++ GT+P L LDLS N+L LP + L +LT L + N L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 265 GGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLT 324
L L ++ L L N P + L LSL N+LT L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 325 SLQILDLSSNQLHS 338
+L L L N L++
Sbjct: 173 NLDTLLLQENSLYT 186
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N+L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNL 151
L +FS F LQ+LDL + L +L+ + L N + P L +L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 152 EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGVLPIYFGTIPIEIESLRNLQWLD 210
E L L IG + L+ L++ N + S LP YF +L NL +D
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-------NLTNLVHVD 154
Query: 211 LSSNKLSGTIPKEIGSLRNLKE----LDLSSNKLGGVLPQEIENLK 252
LS N + ++ LR + LD+S N + + Q + +K
Sbjct: 155 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 200
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 36/213 (16%)
Query: 175 LETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKE 232
L++L+L NK G+I + +L +L +LDLS N LS G +L+
Sbjct: 325 LKSLTLTMNK---------GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 375
Query: 233 LDLS--------SNKLGGVLPQEIE----------------NLKSLTALSMDANNLGGPI 268
LDLS +N +G Q ++ +L+ L L + N
Sbjct: 376 LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 435
Query: 269 PSTLFRLTNIEYLSLGFNRF-NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
LT++ L + N F + ++ N NLT L L +L L LQ
Sbjct: 436 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 495
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
+L++S N L +LS LD S NRI
Sbjct: 496 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
LQWLDLS ++ K L +L L L+ N + P L SL L L
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 112
Query: 266 GPIPSTLFRLTNIEYLSLGFNRFNG-SIPREIVNLKNLTSLSLGGN 310
+ +L ++ L++ N + +P NL NL + L N
Sbjct: 113 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
+DLS N L + L+ LDLS ++ + + L L+ L + N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 269 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 328
P + LT++E L ++ ++ +L++ +G+L +L+
Sbjct: 92 PGSFSGLTSLENLV--------AVETKLASLESF----------------PIGQLITLKK 127
Query: 329 LDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
L+++ N +HS +P N + L ++DLS N I I ++L
Sbjct: 128 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 168
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 18/198 (9%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTI--PKEIGSLRNLEVLDLGS 158
P+L YLDL N LS S L + +L + + G I L L+ LD
Sbjct: 345 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL-DLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 159 NNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIES----LRNLQWLDLSSN 214
+ L E + +LE L L I + I+ + L +L L ++ N
Sbjct: 404 STLKRVT--EFSAFLSLEKL--------LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 453
Query: 215 KLS-GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 273
T+ + NL LDLS +L + + L L L+M NNL S
Sbjct: 454 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 513
Query: 274 RLTNIEYLSLGFNRFNGS 291
+L ++ L FNR S
Sbjct: 514 QLYSLSTLDCSFNRIETS 531
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNL 151
L +FS F LQ+LDL + L +L+ + L N + P L +L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 152 EVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL-SGVLPIYFGTIPIEIESLRNLQWLD 210
E L L IG + L+ L++ N + S LP YF +L NL +D
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-------NLTNLVHVD 159
Query: 211 LSSNKLSGTIPKEIGSLRNLKE----LDLSSNKLGGVLPQEIENLK 252
LS N + ++ LR + LD+S N + + Q + +K
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 36/213 (16%)
Query: 175 LETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLS--GTIPKEIGSLRNLKE 232
L++L+L NK G+I + +L +L +LDLS N LS G +L+
Sbjct: 330 LKSLTLTMNK---------GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 233 LDLS--------SNKLGGVLPQEIE----------------NLKSLTALSMDANNLGGPI 268
LDLS +N +G Q ++ +L+ L L + N
Sbjct: 381 LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440
Query: 269 PSTLFRLTNIEYLSLGFNRF-NGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQ 327
LT++ L + N F + ++ N NLT L L +L L LQ
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500
Query: 328 ILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
+L++S N L +LS LD S NRI
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLG 265
LQWLDLS ++ K L +L L L+ N + P L SL L L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 266 GPIPSTLFRLTNIEYLSLGFNRFNG-SIPREIVNLKNLTSLSLGGN 310
+ +L ++ L++ N + +P NL NL + L N
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 209 LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPI 268
+DLS N L + L+ LDLS ++ + + L L+ L + N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 269 PSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQI 328
P + LT++E L ++ ++ +L++ +G+L +L+
Sbjct: 97 PGSFSGLTSLENLV--------AVETKLASLESF----------------PIGQLITLKK 132
Query: 329 LDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDEL 368
L+++ N +HS +P N + L ++DLS N I I ++L
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 18/198 (9%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTI--PKEIGSLRNLEVLDLGS 158
P+L YLDL N LS S L + +L + + G I L L+ LD
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL-DLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 159 NNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIES----LRNLQWLDLSSN 214
+ L E + +LE L L I + I+ + L +L L ++ N
Sbjct: 409 STLKRVT--EFSAFLSLEKL--------LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 215 KLS-GTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF 273
T+ + NL LDLS +L + + L L L+M NNL S
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518
Query: 274 RLTNIEYLSLGFNRFNGS 291
+L ++ L FNR S
Sbjct: 519 QLYSLSTLDCSFNRIETS 536
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPI 191
LY +L +P + NL+ +L ++GT+P+ L TL L N+L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ----- 90
Query: 192 YFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR---NLKELDLSSNKLGGVLPQEI 248
++P+ ++L L LD+S N+L+ ++P +G+LR L+EL L N+L + P +
Sbjct: 91 ---SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 249 ENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSL 307
L LS+ ANN +P+ L L N++ L L N +IP+ L L
Sbjct: 145 TPTPKLEKLSL-ANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 308 GGN 310
GN
Sbjct: 203 HGN 205
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%)
Query: 100 FPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSN 159
P L LD+ N L+ + L L +YL N L P + LE L L +N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 160 NLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWL 209
+L + + NL+TL L N L + +FG+ + L WL
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 321 GRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRICGI 363
G L L LDLS NQL S +PL+ AL+ LD+S NR+ +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 77 RITDIGLQKSNIKGELGRLNFS-CFPNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYEN 135
R+T + L + EL +L P L LDL N L S+P +L LT + + N
Sbjct: 56 RLTQLNLDRC----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 136 NLTGTIPKEIGSLR---NLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIY 192
LT ++P +G+LR L+ L L N L P + LE LSL N L+ LP
Sbjct: 111 RLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAG 166
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPK 222
+ L NL L L N L TIPK
Sbjct: 167 L------LNGLENLDTLLLQENSLY-TIPK 189
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 442 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 494
+T K D+YSFGVV LEI+ G R P + + + +D+++ N
Sbjct: 211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM----N 266
Query: 495 QKIVQDIILVSTIAFACLSSQPKSRPTMQRIS 526
+ + ++A CL + RP ++++
Sbjct: 267 DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQ 298
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 90/219 (41%), Gaps = 49/219 (22%)
Query: 200 IESLRNLQW----LDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLT 255
+ SLR W LDLS N LS ++ L+ L+LSSN L L ++E+L +L
Sbjct: 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLR 83
Query: 256 ALSMDANN----LGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNK 311
L ++ N L GP TL N +R + S + N + L NK
Sbjct: 84 TLDLNNNYVQELLVGPSIETLHAANN------NISRVSCSRGQGKKN------IYLANNK 131
Query: 312 LTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSALSYLDLSDNRICGIIPDELTX 370
+T G + +Q LDL N++ + + + + L +L+L N I +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------- 184
Query: 371 XXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLS 409
GQ+ FA L +LDLS NKL+
Sbjct: 185 --------------KGQVVFA-----KLKTLDLSSNKLA 204
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 35/161 (21%)
Query: 101 PNLQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNN 160
P+++ L +NN+S S+ N IYL N +T + G ++ LDL N
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Query: 161 LNGTIPIEIGS-----------------------VRNLETLSLDGNKLSGVLPIYFGTIP 197
++ E+ + L+TL L NKL+ + P
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP------- 208
Query: 198 IEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSN 238
E +S + W+ L +NKL I K + +NL+ DL N
Sbjct: 209 -EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 442 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 494
+T K D+YSFGVV LEI+ G R P + + + +D+++ N
Sbjct: 211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM----N 266
Query: 495 QKIVQDIILVSTIAFACLSSQPKSRPTMQRI 525
+ + ++A CL + RP ++++
Sbjct: 267 DADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 442 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 494
+T K D+YSFGVV LEI+ G R P + + + +D+++ N
Sbjct: 205 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM----N 260
Query: 495 QKIVQDIILVSTIAFACLSSQPKSRPTMQRIS 526
+ + ++A CL + RP ++++
Sbjct: 261 DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQ 292
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 301 NLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
N+ L L GN L+ + L T L++L+LSSN L+ ++ L + S L LDL++N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYV 92
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 50/238 (21%)
Query: 181 DGNKLSGVLPIYFGTIPIEIESLRNLQW----LDLSSNKLSGTIPKEIGSLRNLKELDLS 236
+GN+ + + ++ + SLR W LDLS N LS ++ L+ L+LS
Sbjct: 8 NGNRYK-IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 237 SNKLGGVLPQEIENLKSLTALSMDANN----LGGPIPSTLFRLTNIEYLSLGFNRFNGSI 292
SN L L ++E+L +L L ++ N L GP TL N +R + S
Sbjct: 67 SNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN------NISRVSCSR 118
Query: 293 PREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHS-SIPLVIGNFSALS 351
+ N + L NK+T G + +Q LDL N++ + + + + L
Sbjct: 119 GQGKKN------IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 352 YLDLSDNRICGIIPDELTXXXXXXXXXXXXXXXXGQIPFAIGKLFNLASLDLSKNKLS 409
+L+L N I + GQ+ FA L +LDLS NKL+
Sbjct: 173 HLNLQYNFIYDV---------------------KGQVVFA-----KLKTLDLSSNKLA 204
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 46/153 (30%)
Query: 92 LGRLNFSCFPNLQYLDLGSNNLS----GSIPSQIDSLS--NLTYIYLYENNLTGTIPKEI 145
L L+ C +QYLDL N + + + D+L NL Y ++Y
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY------------ 182
Query: 146 GSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRN 205
++ G + L+TL L NKL+ + P E +S
Sbjct: 183 --------------DVKGQVVFA-----KLKTLDLSSNKLAFMGP--------EFQSAAG 215
Query: 206 LQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSN 238
+ W+ L +NKL I K + +NL+ DL N
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
T + L L N+ P +L LT L+L N+LT +LT L L L NQ
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 336 LHSSIPL-VIGNFSALSYLDLSDN 358
L SIP+ V N +L+++ L +N
Sbjct: 100 L-KSIPMGVFDNLKSLTHIYLFNN 122
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 233 LDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLF-RLTNIEYLSLGFNRFNGS 291
L L N++ + P ++L LT L++ N L +P +F +LT + +L+L N+ S
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQLK-S 102
Query: 292 IPREIV-NLKNLTSLSLGGN 310
IP + NLK+LT + L N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 173 RNLETLSLDGNKLSGVLPIYFGTI----PIEIESLRNLQWLDLSSNKLSGTIPKEIGSLR 228
R+L ++ + VL +Y I P +SL L +L+L+ N+L+ L
Sbjct: 29 RSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 229 NLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
L L L N+L + +NLKSLT + +
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 104 QYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNG 163
Q L L N ++ P DSL+ LTY+ L N LT L L L L N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 164 TIPIEIGSVRNLETLS 179
I +G NL++L+
Sbjct: 103 ---IPMGVFDNLKSLT 115
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 176 ETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDL 235
E+LS D + + F +IP + + ++ LDLS NK++ ++ + NL+ L L
Sbjct: 26 ESLSCDASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLIL 83
Query: 236 SSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG-SIPR 294
S+++ + +L SL L + N+L S L++++YL+L N + +
Sbjct: 84 KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 143
Query: 295 EIVNLKNLTSLSLGGNKLTGHIPST-LGRLTSLQILDLSS 333
NL NL +L +G + I LTSL L++ +
Sbjct: 144 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 183
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 17/252 (6%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
++ LDL N ++ + + +NL + L + + SL +LE LDL N+L+
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 163 GTIPIEIGSVRNLETLSLDGNKLS--GVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
G + +L+ L+L GN GV ++ +L NLQ L + + + I
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF--------PNLTNLQTLRIGNVETFSEI 165
Query: 221 PK-EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIE 279
+ + L +L EL++ + L Q +++++ + L++ + + L+++
Sbjct: 166 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 225
Query: 280 YLSL---GFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
YL L RF S +P + V+ + L+ G+ LT + L +L IL+LS +
Sbjct: 226 YLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLR-YILELSEVE 283
Query: 336 LHSSIPLVIGNF 347
+G+F
Sbjct: 284 FDDCTLNGLGDF 295
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 134 ENNLTGTIPKEIGS-LRNLEVLDLGSNNL------NGTIPIEIGSVRNLETLSLDGNKLS 186
EN+ +P L++LE LDL N + N G+ +L+TL L N L
Sbjct: 344 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK---GAWPSLQTLVLSQNHLR 400
Query: 187 GVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGV--- 243
+ G I + +L+NL LD+S N +P ++ L+LSS + V
Sbjct: 401 SMQKT--GEILL---TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTC 454
Query: 244 LPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLT 303
+PQ +E L + NNL +LF L ++ L + N+ ++P + L
Sbjct: 455 IPQTLE------VLDVSNNNLDS---FSLF-LPRLQELYISRNKLK-TLPDASL-FPVLL 502
Query: 304 SLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 343
+ + N+L RLTSLQ + L +N S P +
Sbjct: 503 VMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 542
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 442 VTEKCDVYSFGVVALEILMGR 462
+TEK DVYSFGVV E+L R
Sbjct: 218 LTEKSDVYSFGVVLFEVLCAR 238
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 442 VTEKCDVYSFGVVALEILMGR 462
+TEK DVYSFGVV E+L R
Sbjct: 218 LTEKSDVYSFGVVLFEVLCAR 238
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 41/185 (22%)
Query: 77 RITDIGLQKSNIKGELGRLNFSCFPNLQYLDLGSNNLSGS-----IPSQIDSLSNLTYIY 131
R+ + GL +N K G + +L+ LDLGSN L + P + S L ++
Sbjct: 201 RLENCGLTPANCKDLCGIVASQ--ASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLW 258
Query: 132 LYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRNLETLSLDGNKL----SG 187
L+E ++T + +++ + + + L+ LSL GNKL +
Sbjct: 259 LWECDITASGCRDLCRV--------------------LQAKETLKELSLAGNKLGDEGAR 298
Query: 188 VLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSL----RNLKELDLSSNKLGGV 243
+L ++ESL W+ S L+ + + + ++L EL LSSNKLG
Sbjct: 299 LLCESLLQPGCQLESL----WV--KSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDS 352
Query: 244 LPQEI 248
QE+
Sbjct: 353 GIQEL 357
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 213 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 272
S K ++P I + + L L N++ + P + L LT L +D N L +P+ +
Sbjct: 17 SGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 73
Query: 273 F-RLTNIEYLSLGFNRFNGSIPR-EIVNLKNLTSLSLGGN 310
F +LT + LSL N+ SIPR NLK+LT + L N
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 305 LSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
L L N++T P RLT L LDL +NQL V + L+ L L+DN++
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + + + +YLY+N +T P L L LDL +N L +
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 175 LETLSLDGNKLSGV 188
L LSL+ N+L +
Sbjct: 80 LTQLSLNDNQLKSI 93
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 167 IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGS 226
+ G + L L N+++ + P F + L L LDL +N+L+
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLEPGVF-------DRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 227 LRNLKELDLSSNKLGGVLPQEIENLKSLT 255
L L +L L+ N+L + +NLKSLT
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
T + L L N+ P L LT L L N+LT +LT L L L+ NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 336 LHSSIPLVIGNFSALSYLDLSDN 358
L S N +L+++ L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 213 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 272
S K ++P I + + L L N++ + P + L LT L +D N L +P+ +
Sbjct: 17 SGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 73
Query: 273 F-RLTNIEYLSLGFNRFNGSIPR-EIVNLKNLTSLSLGGN 310
F +LT + LSL N+ SIPR NL++LT + L N
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNN 112
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 305 LSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
L L N++T P RLT L LDL +NQL V + L+ L L+DN++
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + + + +YLY+N +T P L L LDL +N L +
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 175 LETLSLDGNKLSGV 188
L LSL+ N+L +
Sbjct: 80 LTQLSLNDNQLKSI 93
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
T + L L NR P L LT L L N+LT +LT L L L+ NQ
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 336 LHSSIPLVIGNFSALSYLDLSDN 358
L S N +L+++ L +N
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 167 IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGS 226
+ G + L L N+++ + P F + L L LDL +N+L+
Sbjct: 24 VPTGIPTTTQVLYLYDNRITKLEPGVF-------DRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 227 LRNLKELDLSSNKLGGVLPQEIENLKSLTAL 257
L L +L L+ N+L + +NL+SLT +
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEI-ENL 251
++P I + Q L L N+++ P L L LDL +N+L VLP + + L
Sbjct: 21 LASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKL 77
Query: 252 KSLTALSMDANNLGGPIPSTLF 273
LT LS++ N L IP F
Sbjct: 78 TQLTQLSLNDNQLKS-IPRGAF 98
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 442 VTEKCDVYSFGVVALEILMG-------RHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVN 494
+T K D+YSFGVV LEI+ G R P + + + +D++ N
Sbjct: 202 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK----XN 257
Query: 495 QKIVQDIILVSTIAFACLSSQPKSRPTMQRI 525
+ ++A CL + RP ++++
Sbjct: 258 DADSTSVEAXYSVASQCLHEKKNKRPDIKKV 288
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 213 SNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTL 272
S K ++P I + + L L N++ + P + L LT L +D N L +P+ +
Sbjct: 25 SGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 81
Query: 273 F-RLTNIEYLSLGFNRFNGSIPR-EIVNLKNLTSLSLGGN 310
F +LT + LSL N+ SIPR NLK+LT + L N
Sbjct: 82 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 120
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 305 LSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLVIGNFSALSYLDLSDNRI 360
L L N++T P RLT L LDL +NQL V + L+ L L+DN++
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 115 GSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLNGTIPIEIGSVRN 174
S+P+ I + + + +YLY+N +T P L L LDL +N L +
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 175 LETLSLDGNKLSGV 188
L LSL+ N+L +
Sbjct: 88 LTQLSLNDNQLKSI 101
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 276 TNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
T + L L N+ P L LT L L N+LT +LT L L L+ NQ
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 336 LHSSIPLVIGNFSALSYLDLSDN 358
L S N +L+++ L +N
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 167 IEIGSVRNLETLSLDGNKLSGVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGS 226
+ G + L L N+++ + P F + L L LDL +N+L+
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLEPGVF-------DRLTQLTRLDLDNNQLTVLPAGVFDK 84
Query: 227 LRNLKELDLSSNKLGGVLPQEIENLKSLT 255
L L +L L+ N+L + +NLKSLT
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLT 113
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 437 AHTMVVTEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVL-DQRLSPPVNQ 495
A TEK D YSF ++ IL G P + KI IN++ ++ L P + +
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPE 253
Query: 496 KIVQDIILVSTIAFACLSSQPKSRPTMQRI 525
+ V + C S PK RP I
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYI 280
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 437 AHTMVVTEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVL-DQRLSPPVNQ 495
A TEK D YSF ++ IL G P + KI IN++ ++ L P + +
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPE 253
Query: 496 KIVQDIILVSTIAFACLSSQPKSRPTMQRI 525
+ V + C S PK RP I
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYI 280
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 437 AHTMVVTEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVL-DQRLSPPVNQ 495
A TEK D YSF ++ IL G P + KI IN++ ++ L P + +
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPE 253
Query: 496 KIVQDIILVSTIAFACLSSQPKSRPTMQRI 525
+ V + C S PK RP I
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYI 280
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%)
Query: 200 IESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSM 259
+ L L+ ++ S+NK++ + E+ L+SN+L V + + L+SL L +
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 260 DANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLTSLSLGGN 310
+N + + L+++ LSL N+ P L +L++L+L N
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 226 SLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFR-LTNIEYLSLG 284
L L++++ S+NK+ + E + + + +N L + +F+ L +++ L L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113
Query: 285 FNRFNGSIPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQLHSSIPLV 343
NR + L ++ LSL N++T P L SL L+L +N + + L
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 211 LSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPS 270
L+SN+L K L +LK L L SN++ V L S+ LS+ N + P
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 271 TLFRLTNIEYLSLGFNRFN 289
L ++ L+L N FN
Sbjct: 148 AFDTLHSLSTLNLLANPFN 166
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 443 TEKCDVYSFGVVALEIL-MGR--HPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQ 499
T K DV+SFG++ +EI+ GR +PG P++ I L++ P + +
Sbjct: 363 TIKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPE 412
Query: 500 DIILVSTIAFACLSSQPKSRPTMQRIS 526
++ I C ++P+ RPT + I
Sbjct: 413 ELY---NIMMRCWKNRPEERPTFEYIQ 436
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 445 KCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDIILV 504
K D++SFG+ A+E+ G P K++++ + + PP + VQD ++
Sbjct: 207 KADIWSFGITAIELATGAAPYHKYPPM------KVLMLTLQN---DPPSLETGVQDKEML 257
Query: 505 STIAFA-------CLSSQPKSRPT 521
+ CL P+ RPT
Sbjct: 258 KKYGKSFRKMISLCLQKDPEKRPT 281
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLK 252
F +IP + + ++ LDLS NK++ ++ + NL+ L L S+++ + +L
Sbjct: 17 FTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 253 SLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNG-SIPREIVNLKNLTSLSLGGNK 311
SL L + N+L S L++++YL+L N + + NL NL +L +G +
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 312 LTGHIPS-TLGRLTSLQILDLSS 333
I LTSL L++ +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKA 157
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 17/252 (6%)
Query: 103 LQYLDLGSNNLSGSIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDLGSNNLN 162
++ LDL N ++ + + +NL + L + + SL +LE LDL N+L+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 163 GTIPIEIGSVRNLETLSLDGNKLS--GVLPIYFGTIPIEIESLRNLQWLDLSSNKLSGTI 220
G + +L+ L+L GN GV ++ +L NLQ L + + + I
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF--------PNLTNLQTLRIGNVETFSEI 139
Query: 221 PK-EIGSLRNLKELDLSSNKLGGVLPQEIENLKSLTALSMDANNLGGPIPSTLFRLTNIE 279
+ + L +L EL++ + L Q +++++ + L++ + + L+++
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199
Query: 280 YLSL---GFNRFNGS-IPREIVNLKNLTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSNQ 335
YL L RF S +P + V+ + L+ G+ LT + L +L IL+LS +
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVE 257
Query: 336 LHSSIPLVIGNF 347
+G+F
Sbjct: 258 FDDCTLNGLGDF 269
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 193 FGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLSSNKLGGVLPQEIENLK 252
FG + + E L NL L+LS NKL K+I +L LK+L E LK
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKL---------------ECLK 123
Query: 253 SLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIP 293
SL + + NL S L + YL G++R + P
Sbjct: 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLD-GYDREDQEAP 163
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 443 TEKCDVYSFGVVALEIL-MGR--HPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQ 499
T K DV+SFG++ +EI+ GR +PG P++ I L++ P + +
Sbjct: 347 TIKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPE 396
Query: 500 DIILVSTIAFACLSSQPKSRPTMQRIS 526
++ I C ++P+ RPT + I
Sbjct: 397 ELY---NIMMRCWKNRPEERPTFEYIQ 420
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 443 TEKCDVYSFGVVALEIL-MGR--HPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQ 499
T K DV+SFG++ +EI+ GR +PG P++ I L++ P + +
Sbjct: 190 TIKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPE 239
Query: 500 DIILVSTIAFACLSSQPKSRPTMQRIS 526
++ I C ++P+ RPT + I
Sbjct: 240 ELY---NIMMRCWKNRPEERPTFEYIQ 263
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 445 KCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDIILV 504
K D++SFG+ A+E+ G P K++++ + + PP + VQD ++
Sbjct: 202 KADIWSFGITAIELATGAAPYHKYPPM------KVLMLTLQN---DPPSLETGVQDKEML 252
Query: 505 STIAFA-------CLSSQPKSRPT 521
+ CL P+ RPT
Sbjct: 253 KKYGKSFRKMISLCLQKDPEKRPT 276
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 302 LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
+T LSL G +G +P +G+LT L++L L S+
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 195 TIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 236
+IP +L++ W L NKL GT+ EI + K LDL
Sbjct: 9 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLE 50
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 116 SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
SIP ++L + + L EN L GT+ EI + ++LDL
Sbjct: 9 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDL 49
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 189 LPIYFGTIPIEIESLRNLQWLDLSSNKLSGTIPKEIGSLRNLKELDLS 236
L + +IP +L++ W L NKL GT+ EI + K LDL
Sbjct: 1 LALKKKSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLE 48
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 116 SIPSQIDSLSNLTYIYLYENNLTGTIPKEIGSLRNLEVLDL 156
SIP ++L + + L EN L GT+ EI + ++LDL
Sbjct: 7 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDL 47
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 37/142 (26%)
Query: 206 LQWLDLSSNKLSG--TIPKEIGSL--------------RNLKELDLSSNKLGG--VLPQE 247
LQ L +S N+L+ T+P E+ L LKEL +S N+L VLP E
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE 242
Query: 248 IENL----KSLTALSMDANNLGGPIPSTLFRLTNIEYLSLGFNRFNGSIPREIVNLKNLT 303
++ L LT+L M +PS L L S+ N+ +P +++L + T
Sbjct: 243 LKELMVSGNRLTSLPM--------LPSGLLSL------SVYRNQLT-RLPESLIHLSSET 287
Query: 304 SLSLGGNKLTGHIPSTLGRLTS 325
+++L GN L+ L +TS
Sbjct: 288 TVNLEGNPLSERTLQALREITS 309
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 445 KCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIVQDIILV 504
K D++S G+ A+E+ G P M + L + SPP + Q
Sbjct: 196 KADIWSLGITAIELAKGEPPNSDLHP---------MRVLFLIPKNSPPTLEG--QHSKPF 244
Query: 505 STIAFACLSSQPKSRPTMQRI 525
ACL+ P+ RPT + +
Sbjct: 245 KEFVEACLNKDPRFRPTAKEL 265
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 297 VNLKN---LTSLSLGGNKLTGHIPSTLGRLTSLQILDLSSN 334
V+L N +T LSL G G +P +G+LT L++L ++
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 443 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIV---- 498
+EK DV+ +GV+ LE++ G+ + +ML++ + L + +V
Sbjct: 213 SEKTDVFGYGVMLLELITGQRAFDLARLANDD---DVMLLDWVKGLLKEKKLEALVDVDL 269
Query: 499 ------QDIILVSTIAFACLSSQPKSRPTMQRI 525
+++ + +A C S P RP M +
Sbjct: 270 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEV 302
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 443 TEKCDVYSFGVVALEILMGRHPGEXXXXXXXXXGPKIMLINVLDQRLSPPVNQKIV---- 498
+EK DV+ +GV+ LE++ G+ + +ML++ + L + +V
Sbjct: 221 SEKTDVFGYGVMLLELITGQRAFDLARLANDD---DVMLLDWVKGLLKEKKLEALVDVDL 277
Query: 499 ------QDIILVSTIAFACLSSQPKSRPTMQRI 525
+++ + +A C S P RP M +
Sbjct: 278 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEV 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,856,640
Number of Sequences: 62578
Number of extensions: 552289
Number of successful extensions: 3087
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 624
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)