Query 009772
Match_columns 526
No_of_seqs 246 out of 1347
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 17:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 3.4E-62 7.4E-67 504.9 33.4 408 88-516 22-437 (437)
2 PTZ00206 amino acid transporte 100.0 1.4E-56 3.1E-61 475.4 33.5 398 102-514 58-465 (467)
3 KOG1304 Amino acid transporter 100.0 1.6E-55 3.4E-60 447.5 31.8 387 102-513 45-449 (449)
4 PLN03074 auxin influx permease 100.0 3.3E-50 7.2E-55 425.0 33.1 391 102-524 44-462 (473)
5 PF01490 Aa_trans: Transmembra 100.0 4.7E-54 1E-58 451.8 0.9 392 102-510 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 3.6E-44 7.8E-49 369.2 25.6 400 102-517 4-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.9E-44 6.2E-49 344.0 4.1 390 102-520 115-521 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.1E-31 2.4E-36 280.1 32.7 392 102-509 7-411 (415)
9 PRK10483 tryptophan permease; 99.9 2.8E-24 6.1E-29 221.1 31.7 353 100-481 7-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.3E-23 5E-28 216.2 34.9 371 103-501 2-390 (394)
11 PRK09664 tryptophan permease T 99.9 2.1E-23 4.5E-28 214.5 32.5 376 103-504 8-402 (415)
12 PRK15132 tyrosine transporter 99.9 3E-23 6.6E-28 214.4 32.5 374 104-506 3-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 5.4E-23 1.2E-27 214.3 26.7 347 109-481 2-359 (381)
14 PRK13629 threonine/serine tran 99.9 5.2E-19 1.1E-23 182.2 32.1 386 110-504 25-437 (443)
15 TIGR00814 stp serine transport 99.8 1.5E-18 3.3E-23 179.9 24.6 377 108-499 7-396 (397)
16 PRK10655 potE putrescine trans 99.5 1.2E-10 2.7E-15 123.7 33.7 240 100-359 4-245 (438)
17 TIGR03810 arg_ornith_anti argi 99.4 9.9E-10 2.1E-14 117.7 35.0 248 102-363 1-254 (468)
18 PRK10435 cadB lysine/cadaverin 99.4 1.2E-09 2.6E-14 115.9 35.3 243 99-361 2-245 (435)
19 TIGR00905 2A0302 transporter, 99.4 6E-10 1.3E-14 119.6 32.9 245 101-360 6-255 (473)
20 PRK10644 arginine:agmatin anti 99.4 1.4E-09 3E-14 115.8 35.0 240 100-359 6-247 (445)
21 PRK11021 putative transporter; 99.4 1.3E-09 2.7E-14 114.9 34.1 229 105-357 2-231 (410)
22 TIGR00912 2A0309 spore germina 99.4 1.4E-10 3E-15 120.0 26.0 338 103-479 2-352 (359)
23 PRK10249 phenylalanine transpo 99.4 3.3E-09 7.1E-14 113.4 34.3 238 100-358 19-264 (458)
24 TIGR00909 2A0306 amino acid tr 99.3 1.4E-09 3.1E-14 115.2 30.3 244 101-359 2-251 (429)
25 TIGR01773 GABAperm gamma-amino 99.3 6.4E-09 1.4E-13 111.0 33.2 240 99-359 9-257 (452)
26 PRK11049 D-alanine/D-serine/gl 99.3 6.8E-09 1.5E-13 111.2 32.7 239 100-358 18-266 (469)
27 PRK11357 frlA putative fructos 99.3 1E-08 2.2E-13 109.2 31.5 239 101-358 7-250 (445)
28 PRK11387 S-methylmethionine tr 99.2 2E-08 4.4E-13 107.7 33.5 243 101-362 13-265 (471)
29 PRK15049 L-asparagine permease 99.2 2.4E-08 5.3E-13 107.7 34.1 240 101-359 27-276 (499)
30 PRK10746 putative transport pr 99.2 2.6E-08 5.7E-13 106.4 34.1 356 101-481 9-388 (461)
31 TIGR00930 2a30 K-Cl cotranspor 99.2 2.7E-08 5.9E-13 113.9 35.8 249 99-357 73-334 (953)
32 PRK10580 proY putative proline 99.2 3.1E-08 6.7E-13 105.9 34.1 237 100-357 7-253 (457)
33 KOG1287 Amino acid transporter 99.2 8.5E-10 1.8E-14 114.5 21.1 366 98-486 8-391 (479)
34 TIGR00906 2A0303 cationic amin 99.2 3.7E-08 8.1E-13 107.5 34.6 363 100-480 26-410 (557)
35 TIGR00911 2A0308 L-type amino 99.2 1.5E-08 3.3E-13 109.6 30.3 246 100-360 40-292 (501)
36 PRK10238 aromatic amino acid t 99.2 3.1E-08 6.7E-13 105.8 32.0 236 100-354 10-251 (456)
37 TIGR00908 2A0305 ethanolamine 99.2 6E-08 1.3E-12 103.3 33.5 237 101-356 6-244 (442)
38 PF13520 AA_permease_2: Amino 99.2 3E-09 6.4E-14 112.6 22.3 382 105-510 2-404 (426)
39 TIGR00913 2A0310 amino acid pe 99.1 1.5E-07 3.2E-12 101.3 34.1 237 102-357 2-251 (478)
40 PRK10197 gamma-aminobutyrate t 99.1 7.5E-08 1.6E-12 102.5 29.9 224 114-357 4-235 (446)
41 PRK10836 lysine transporter; P 99.1 7.3E-07 1.6E-11 96.2 34.1 241 100-360 13-262 (489)
42 PF03845 Spore_permease: Spore 99.0 1.3E-07 2.8E-12 96.3 25.7 284 104-421 2-295 (320)
43 COG0531 PotE Amino acid transp 98.9 9.9E-06 2.1E-10 86.6 33.7 248 102-364 12-262 (466)
44 PRK15238 inner membrane transp 98.8 1.2E-05 2.5E-10 87.0 33.7 238 101-357 6-265 (496)
45 COG1113 AnsP Gamma-aminobutyra 98.8 2.2E-06 4.7E-11 88.2 24.8 352 102-480 13-388 (462)
46 TIGR00907 2A0304 amino acid pe 98.8 3E-05 6.4E-10 83.6 34.2 251 102-363 12-277 (482)
47 TIGR03428 ureacarb_perm permea 98.7 0.0003 6.5E-09 75.7 38.6 253 102-363 13-273 (475)
48 TIGR03813 put_Glu_GABA_T putat 98.6 6.3E-05 1.4E-09 80.9 31.7 53 306-363 202-254 (474)
49 KOG3832 Predicted amino acid t 98.5 1E-06 2.3E-11 80.3 11.5 211 107-324 15-299 (319)
50 TIGR00910 2A0307_GadC glutamat 98.5 0.00021 4.6E-09 77.4 30.1 50 301-355 197-246 (507)
51 COG0833 LysP Amino acid transp 98.4 0.00016 3.4E-09 76.3 26.7 354 101-479 43-426 (541)
52 PF00324 AA_permease: Amino ac 98.3 5.9E-06 1.3E-10 88.9 13.8 237 114-366 7-263 (478)
53 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.0016 3.6E-08 69.3 32.1 244 106-367 23-275 (442)
54 PRK11375 allantoin permease; P 98.3 0.0032 7E-08 67.7 33.0 280 167-467 88-388 (484)
55 COG3949 Uncharacterized membra 98.2 0.00086 1.9E-08 66.4 23.7 131 107-255 6-141 (349)
56 TIGR02358 thia_cytX probable h 98.1 0.0066 1.4E-07 63.4 31.3 307 106-464 7-316 (386)
57 PRK09442 panF sodium/panthothe 98.1 0.03 6.5E-07 60.4 35.2 149 100-262 39-191 (483)
58 TIGR02119 panF sodium/pantothe 98.0 0.024 5.3E-07 60.9 33.8 150 100-264 38-192 (471)
59 KOG1286 Amino acid transporter 98.0 0.00057 1.2E-08 74.0 20.0 368 101-480 29-422 (554)
60 KOG1289 Amino acid transporter 97.6 0.1 2.3E-06 55.4 29.2 65 296-365 250-314 (550)
61 TIGR00813 sss transporter, SSS 97.6 0.11 2.4E-06 54.7 29.8 147 102-263 3-150 (407)
62 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.11 2.3E-06 54.5 27.0 55 427-481 323-378 (416)
63 TIGR00796 livcs branched-chain 97.5 0.17 3.8E-06 52.4 29.8 142 314-477 197-346 (378)
64 COG0591 PutP Na+/proline sympo 97.5 0.25 5.4E-06 53.4 32.6 145 101-259 37-185 (493)
65 PF00474 SSF: Sodium:solute sy 97.3 0.044 9.5E-07 57.6 22.0 147 102-263 6-154 (406)
66 COG1457 CodB Purine-cytosine p 97.3 0.3 6.4E-06 51.4 27.0 256 169-464 82-344 (442)
67 PRK11017 codB cytosine permeas 97.0 0.63 1.4E-05 48.9 29.9 172 167-364 70-244 (404)
68 PRK12488 acetate permease; Pro 96.9 0.95 2.1E-05 49.7 35.0 149 100-264 65-215 (549)
69 TIGR00835 agcS amino acid carr 96.8 0.94 2E-05 47.7 28.3 83 103-189 46-138 (425)
70 TIGR03648 Na_symport_lg probab 96.7 1.4 3.1E-05 48.3 33.9 145 100-259 30-175 (552)
71 PRK10484 putative transporter; 96.6 1.4 3.1E-05 48.0 34.6 154 100-263 36-195 (523)
72 PF01566 Nramp: Natural resist 96.6 0.78 1.7E-05 47.4 23.8 79 169-259 43-123 (358)
73 PF02133 Transp_cyt_pur: Perme 96.5 0.018 3.9E-07 61.3 11.1 50 168-218 71-120 (440)
74 PF05525 Branch_AA_trans: Bran 96.4 1.6 3.6E-05 45.9 25.9 329 104-478 3-353 (427)
75 TIGR02121 Na_Pro_sym sodium/pr 96.4 1.9 4.1E-05 46.5 31.2 149 101-261 35-188 (487)
76 COG1953 FUI1 Cytosine/uracil/t 96.3 2 4.3E-05 45.7 29.5 199 167-375 102-317 (497)
77 PRK15419 proline:sodium sympor 96.2 2.6 5.5E-05 45.8 34.8 147 100-262 38-193 (502)
78 TIGR02711 symport_actP cation/ 95.7 4.1 8.9E-05 44.7 34.8 146 100-261 65-212 (549)
79 COG0733 Na+-dependent transpor 95.3 4.4 9.5E-05 42.5 25.5 214 104-324 9-241 (439)
80 PF02554 CstA: Carbon starvati 95.3 0.64 1.4E-05 47.4 15.1 101 104-211 52-156 (376)
81 PRK00701 manganese transport p 95.3 4.9 0.00011 42.7 30.1 36 168-204 94-129 (439)
82 PRK15433 branched-chain amino 95.1 5.5 0.00012 42.1 23.4 328 105-478 9-356 (439)
83 PRK09395 actP acetate permease 94.8 8 0.00017 42.5 36.0 144 101-260 68-213 (551)
84 PRK15015 carbon starvation pro 92.4 2.1 4.6E-05 46.9 13.1 97 107-210 86-186 (701)
85 TIGR00796 livcs branched-chain 91.3 1.8 3.9E-05 45.0 10.9 78 167-256 254-331 (378)
86 COG1966 CstA Carbon starvation 90.9 11 0.00024 40.6 16.1 81 105-188 53-134 (575)
87 KOG1288 Amino acid transporter 90.0 15 0.00032 40.6 16.2 55 299-358 295-349 (945)
88 COG4147 DhlC Predicted symport 89.8 30 0.00065 36.7 24.0 178 167-361 103-294 (529)
89 PF00209 SNF: Sodium:neurotran 88.6 41 0.00089 36.6 28.3 30 104-133 5-35 (523)
90 TIGR01197 nramp NRAMP (natural 88.1 37 0.0008 35.5 28.8 21 168-189 64-84 (390)
91 PF05525 Branch_AA_trans: Bran 87.2 18 0.00038 38.3 14.7 66 168-244 261-326 (427)
92 PF01235 Na_Ala_symp: Sodium:a 85.6 52 0.0011 34.7 22.2 48 103-151 18-66 (416)
93 COG4145 PanF Na+/panthothenate 84.9 51 0.0011 34.0 27.2 119 123-254 61-181 (473)
94 KOG2082 K+/Cl- cotransporter K 84.3 78 0.0017 35.7 21.3 160 102-265 113-285 (1075)
95 KOG2466 Uridine permease/thiam 83.7 66 0.0014 34.3 19.6 266 97-376 48-332 (572)
96 COG1114 BrnQ Branched-chain am 81.7 17 0.00037 37.9 11.2 77 169-257 264-340 (431)
97 KOG1291 Mn2+ and Fe2+ transpor 78.7 95 0.0021 33.0 17.8 36 427-462 355-392 (503)
98 KOG2083 Na+/K+ symporter [Inor 69.2 14 0.00031 40.1 7.1 105 108-217 39-143 (643)
99 COG1114 BrnQ Branched-chain am 68.2 1.6E+02 0.0035 30.9 25.4 123 339-478 229-355 (431)
100 PLN02680 carbon-monoxide oxyge 63.4 76 0.0017 30.5 10.1 96 296-410 48-143 (232)
101 PRK15433 branched-chain amino 59.9 44 0.00095 35.4 8.6 64 169-244 266-329 (439)
102 KOG2349 Na+:iodide/myo-inosito 53.7 3E+02 0.0066 30.3 13.9 34 102-135 45-79 (585)
103 PLN00151 potassium transporter 53.6 4E+02 0.0087 30.7 15.0 49 303-362 349-397 (852)
104 TIGR00909 2A0306 amino acid tr 52.4 3E+02 0.0064 28.8 14.4 46 169-215 265-310 (429)
105 PF12046 DUF3529: Protein of u 51.2 23 0.0005 32.2 4.2 88 68-158 41-129 (173)
106 KOG4812 Golgi-associated prote 48.1 41 0.00089 32.2 5.4 68 437-508 161-243 (262)
107 PF02468 PsbN: Photosystem II 47.3 22 0.00048 24.4 2.6 29 339-367 4-32 (43)
108 PF11085 YqhR: Conserved membr 47.1 53 0.0011 29.9 5.8 87 182-277 68-154 (173)
109 cd08763 Cyt_b561_CYB561 Verteb 42.6 2.4E+02 0.0052 24.9 9.4 66 336-410 39-104 (143)
110 PRK13183 psbN photosystem II r 42.3 23 0.0005 24.6 2.1 31 337-367 5-35 (46)
111 PRK11281 hypothetical protein; 42.1 3.4E+02 0.0073 32.7 12.9 28 338-365 544-571 (1113)
112 CHL00020 psbN photosystem II p 39.6 21 0.00045 24.5 1.5 30 338-367 3-32 (43)
113 COG0814 SdaC Amino acid permea 38.9 4.9E+02 0.011 27.4 21.7 167 340-511 227-409 (415)
114 PRK03356 L-carnitine/gamma-but 38.4 2.7E+02 0.0058 30.3 10.6 50 169-219 170-224 (504)
115 PF05805 L6_membrane: L6 membr 37.0 1.6E+02 0.0035 27.5 7.5 64 452-515 43-117 (195)
116 KOG3660 Sodium-neurotransmitte 36.9 6.5E+02 0.014 28.2 16.7 30 105-134 39-69 (629)
117 cd08766 Cyt_b561_ACYB-1_like P 36.7 1.5E+02 0.0032 26.3 7.0 66 336-410 39-104 (144)
118 COG1115 AlsT Na+/alanine sympo 36.2 5.6E+02 0.012 27.3 23.2 48 103-151 62-110 (452)
119 PHA02764 hypothetical protein; 35.8 4.9E+02 0.011 26.5 19.5 82 102-189 12-98 (399)
120 PLN02810 carbon-monoxide oxyge 35.6 3.7E+02 0.0081 25.8 9.8 66 336-410 78-143 (231)
121 cd08765 Cyt_b561_CYBRD1 Verteb 34.8 1.8E+02 0.0038 26.1 7.2 69 333-410 43-111 (153)
122 PRK10263 DNA translocase FtsK; 34.7 6.5E+02 0.014 30.8 13.5 21 341-361 26-46 (1355)
123 PRK12768 CysZ-like protein; Re 29.7 4.8E+02 0.01 25.3 9.9 20 336-355 17-36 (240)
124 TIGR00906 2A0303 cationic amin 28.8 8.1E+02 0.018 26.9 18.6 19 348-366 536-554 (557)
125 COG3125 CyoD Heme/copper-type 27.3 3.8E+02 0.0083 22.6 7.8 81 429-513 17-101 (111)
126 PLN02351 cytochromes b561 fami 27.2 5.3E+02 0.011 25.0 9.4 64 337-410 83-146 (242)
127 KOG1619 Cytochrome b [Energy p 25.8 3.2E+02 0.007 26.4 7.6 71 331-410 82-152 (245)
128 cd08762 Cyt_b561_CYBASC3 Verte 25.7 5.3E+02 0.012 23.8 12.6 67 335-410 68-134 (179)
129 PF05656 DUF805: Protein of un 25.5 3.9E+02 0.0086 22.2 8.2 25 465-489 55-79 (120)
130 cd08764 Cyt_b561_CG1275_like N 25.5 2.7E+02 0.0058 26.5 7.1 67 337-410 57-123 (214)
131 PF09971 DUF2206: Predicted me 25.2 6.1E+02 0.013 26.3 10.3 45 430-474 148-192 (367)
132 PF02028 BCCT: BCCT family tra 24.8 9E+02 0.02 26.1 26.6 90 169-265 163-255 (485)
133 PHA02680 ORF090 IMV phosphoryl 24.3 2.7E+02 0.0058 22.3 5.6 60 302-367 15-74 (91)
134 PF06800 Sugar_transport: Suga 23.5 7.2E+02 0.016 24.5 10.0 54 429-482 196-249 (269)
135 TIGR00907 2A0304 amino acid pe 23.2 9.2E+02 0.02 25.6 16.4 48 168-215 289-336 (482)
136 KOG1289 Amino acid transporter 22.6 1E+03 0.023 26.0 12.9 45 168-213 325-369 (550)
137 PF02028 BCCT: BCCT family tra 22.3 3.7E+02 0.008 29.0 8.3 64 198-261 401-465 (485)
138 PF11345 DUF3147: Protein of u 22.1 4.1E+02 0.009 22.2 6.9 76 431-511 4-80 (108)
139 PF04193 PQ-loop: PQ loop repe 21.8 1.8E+02 0.0039 21.0 4.2 23 302-324 3-25 (61)
140 KOG1287 Amino acid transporter 21.0 7.2E+02 0.016 26.8 10.0 42 170-213 275-316 (479)
141 PF01102 Glycophorin_A: Glycop 20.5 1.5E+02 0.0033 25.5 4.0 24 492-515 66-89 (122)
142 PF05915 DUF872: Eukaryotic pr 20.0 2.3E+02 0.0049 24.1 4.9 65 106-173 41-112 (115)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-62 Score=504.92 Aligned_cols=408 Identities=36% Similarity=0.608 Sum_probs=363.8
Q ss_pred CCCCCCCCcccccccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHch---hhcCC
Q 009772 88 KLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLH---EAVPG 164 (526)
Q Consensus 88 ~~~~~~~~l~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~---~~~~g 164 (526)
+..+.|+|.+.+++|++|++++++|.++.++|.|+|+||||++++||..|++++++.++++.||..+|.+|. +..++
T Consensus 22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 445777888889999999999999999999999999999999999999999999999999999999998884 44567
Q ss_pred ccccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhh
Q 009772 165 KRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS 244 (526)
Q Consensus 165 ~r~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~ 244 (526)
+|..+|.|+++++||++. ++++...+...++|+|+.|++..+|+++.+++..+.+.+ .++.+.|+++++++++|++
T Consensus 102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s 177 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLS 177 (437)
T ss_pred ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHH
Confidence 788999999999999975 888888888889999999999999999999999887521 4557899999999999999
Q ss_pred cCCCcchhhHhHHHHHHHHHHHHHhhhhhhcccCCCCCCC-CCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhh
Q 009772 245 QLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNIS-YEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQAT 323 (526)
Q Consensus 245 ~l~~l~~l~~~S~~~~~~~~~~~~ii~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~ 323 (526)
++||+++++++|..++++++.|+++.++.++.+|...+.. .+ ........ ..++++|+++|+|.||+++||||++
T Consensus 178 ~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~-~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~t 253 (437)
T KOG1303|consen 178 QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG-YLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHT 253 (437)
T ss_pred HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccC-cccCCCCc---chhhhhhheeeeecCCeeeeehHhh
Confidence 9999999999999999999999999999998888644222 22 11111111 1189999999999999999999999
Q ss_pred CCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhh
Q 009772 324 MPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSF 403 (526)
Q Consensus 324 m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sy 403 (526)
| |+|.+ |+|++.+++.+++++|+.+++.||++|||++++ +++.|+ ..|.|+...+++++.+|++.+|
T Consensus 254 M----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~-~il~s~------~~p~~~~~~ani~i~~h~i~s~ 320 (437)
T KOG1303|consen 254 M----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD-NILLSL------QPPTWLIALANILIVLHLIGSY 320 (437)
T ss_pred c----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch-hhhhcc------cCchhHHHHHHHHHHHHHhhhh
Confidence 9 77877 669999999999999999999999999999996 999999 3578999999999999999999
Q ss_pred hccchhHHHHHHhhhcccccc-c-cccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhC
Q 009772 404 QIYSMPVFDSFEASYTSRTNR-P-CSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKK 480 (526)
Q Consensus 404 pl~~~p~~~~le~~~~~~~~~-~-~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~ 480 (526)
+++..|+.+.+|+....++++ + +..+.|.+.|+.+++.++++|+.+|+|+++++++||+.. ++++++||+||++.+|
T Consensus 321 ~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k 400 (437)
T KOG1303|consen 321 QIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKK 400 (437)
T ss_pred hhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999998755441 1 345789999999999999999999999999999999999 9999999999999999
Q ss_pred CCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Q 009772 481 PTKYSFNWYFNWIL-GWLGVAFSLAFSIGGLWSIVNS 516 (526)
Q Consensus 481 ~~~~~~~~~~~~~l-~~~g~~~~v~g~~~si~~ii~~ 516 (526)
++++..+|+.+|.+ .++|+++++...++++++++.+
T Consensus 401 ~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 401 PKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999 7999999999999999998753
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.4e-56 Score=475.42 Aligned_cols=398 Identities=15% Similarity=0.200 Sum_probs=320.4
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhccc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER 181 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~ 181 (526)
.+++..+++||++|+++|+|+|+||+||+++||+.|+++++++++++.||.++|.+++++ .+ ..+|+|+++++|||
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~- 133 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP- 133 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-
Confidence 468999999999999999999999999999999999999999999999999999999874 23 56999999999999
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCC-CCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHH
Q 009772 182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPL-CSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (526)
Q Consensus 182 ~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~ 260 (526)
++++++++.+...++|+|++|+++.+|+++.+++.....+ ......++..+.+++.++++|++++|++++|+++|.+++
T Consensus 134 ~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 134 WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 5888888899999999999999999999998875421110 000011223344556677899999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCC---CCCCCC-CC-CCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 009772 261 ITAVTYSTMVWVLSVSQPRPPNI---SYEPLS-SA-SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (526)
Q Consensus 261 ~~~~~~~~ii~~~~i~~~~~~~~---~~~~~~-~~-~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~ 335 (526)
++.+...+++++.+..++.+++. +++++. .. .......+++.++|+++|||.||.+++++++|| |+|+.++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~ 289 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGK 289 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhH
Confidence 77665555554555544443322 221100 00 001112468899999999999999999999999 7888888
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFE 415 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le 415 (526)
+.+++..++.+++++|..+|++||++||+++++ +|+.|+. +..+....++++++++.++++||++.+|+|+.++
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~-~Illn~~-----p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~ 363 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTG-SVLLMYD-----PVNEPAIMVGFVGVLVKLFVSYALLGMACRNALY 363 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccch-HHHHhCC-----CCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 889999999999999999999999999999995 9999992 1224455677888999999999999999999999
Q ss_pred hhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhh---CCCCcchhHHHH
Q 009772 416 ASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIK---KPTKYSFNWYFN 491 (526)
Q Consensus 416 ~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~---~~~~~~~~~~~~ 491 (526)
+.+..+.+ +.++|+|...+..++++++++|+++|+++.+++++||+++ .++|++|+++|++.. +++....+|+.+
T Consensus 364 ~~~~~~~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~ 442 (467)
T PTZ00206 364 DVIGWDAR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYIST 442 (467)
T ss_pred HHhCCCcc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHH
Confidence 98743322 2345677777777778889999999999999999999999 999999999999852 223333456779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009772 492 WILGWLGVAFSLAFSIGGLWSIV 514 (526)
Q Consensus 492 ~~l~~~g~~~~v~g~~~si~~ii 514 (526)
++++++|++..+.||++++++.+
T Consensus 443 ~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 443 YVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999999986
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=447.49 Aligned_cols=387 Identities=18% Similarity=0.232 Sum_probs=336.3
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhh---cCCccccCHHHHHHHHh
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA---VPGKRYNRYVELAQAAF 178 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~---~~g~r~~sY~~l~~~~~ 178 (526)
+..|..++..|++|.++|+|+|++|+||+++||+.|.+...+++.++.||+++|++|.+. ..+....+|+|.++.++
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM 124 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999543 11222468888887764
Q ss_pred ----------cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCC
Q 009772 179 ----------GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN 248 (526)
Q Consensus 179 ----------G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~ 248 (526)
|+ ++|.++++.++..|+|+|++|+++++++++++.+.... ...+.+.|+.+.....++++++||
T Consensus 125 ~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~-----~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 125 EGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP-----GVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred cCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC-----CCccHHHHHHHHHHHHHHHHHHHh
Confidence 55 57788899999999999999999999999999883222 457788999998899999999999
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 009772 249 LNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (526)
Q Consensus 249 l~~l~~~S~~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~ 328 (526)
+|.|+.+|++++++.++-..++.+..+.... +. .+.....++.+++.++|+.+|||+|+++++|++++|
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~-----~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M---- 267 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLP--PT-----SDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM---- 267 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--Cc-----cccccccchhhhHHHHHHHHHHhccceEEEehhhcc----
Confidence 9999999999999887766655555444322 11 122234557899999999999999999999999999
Q ss_pred CCCCccccc-hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccc
Q 009772 329 KHPAHVPMW-RGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYS 407 (526)
Q Consensus 329 k~p~~~~m~-~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~ 407 (526)
|+|++++-. +++..++.+++++|..+|++||++|||++++ .|+.|+ ++ +|+...++++++++++.+||+++
T Consensus 268 k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~-sITLNL------P~-~~l~~~Vkl~~ai~I~ls~pLQ~ 339 (449)
T KOG1304|consen 268 KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKG-SITLNL------PQ-EILSQTVKLLLAIAIFLTYPLQF 339 (449)
T ss_pred cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccc-eEEecC------Cc-cHHHHHHHHHHHHHHHHcCchhh
Confidence 899887522 7899999999999999999999999999995 999999 66 78889999999999999999999
Q ss_pred hhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCC---
Q 009772 408 MPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTK--- 483 (526)
Q Consensus 408 ~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~--- 483 (526)
+|..+.+|+++.+|.+..+.++..+.+|.+++++++.+|.++|+++.+++++|++++ .+.+++|++++++.++++.
T Consensus 340 yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~ 419 (449)
T KOG1304|consen 340 YVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGR 419 (449)
T ss_pred hhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCc
Confidence 999999999987766655567888999999999999999999999999999999999 9999999999999977544
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009772 484 YSFNWYFNWILGWLGVAFSLAFSIGGLWSI 513 (526)
Q Consensus 484 ~~~~~~~~~~l~~~g~~~~v~g~~~si~~i 513 (526)
+.++++.|.+++++|++..+.|||.++.++
T Consensus 420 ~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 420 FMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 356778899999999999999999999764
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.3e-50 Score=425.04 Aligned_cols=391 Identities=16% Similarity=0.206 Sum_probs=317.2
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhh----c--CCc--c--ccCHH
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA----V--PGK--R--YNRYV 171 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~----~--~g~--r--~~sY~ 171 (526)
++++.+++.+|+++..+|.|+|+||+||+++||+.|+++++++++++.||.++|.++..+ . ++. + ..+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999987321 1 111 1 13789
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcch
Q 009772 172 ELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNS 251 (526)
Q Consensus 172 ~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~ 251 (526)
|+++..+||+++++... .....+++.|+.|++..++++..+ . ...+.+.|.++++++++|++++|++++
T Consensus 124 e~~~~~~G~~~~~~~~~-~~~v~l~~~~v~~li~~~~~~~~l----~------~~~~~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLA-FNCTFLLFGSVIQLIACASNIYYI----N------DNLDKRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHhcChhHHHHHHH-HHhhhhHHHHHHHHHHHhhhhhhh----C------CCcCCCeEEeehHHHHHHHHHccCHHH
Confidence 99999999976665544 444555888999999878776643 1 235678899999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 009772 252 IAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331 (526)
Q Consensus 252 l~~~S~~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p 331 (526)
++++|.+|+.+++.+.+.++..++.++..++.+++ ...+...++.++++++|+|+||.++|+|+++| |+|
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~------~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P 262 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKP 262 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC------CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cCh
Confidence 99999999887665444444444444443333321 12456678888999999999999999999999 899
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC-hhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPS-GGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 332 ~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~-g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
++++ ++...++..++..|+.+|+.||++|||++.+ .+.+.|+ +.+.+ ..+++++++++++.+|++++.|+
T Consensus 263 ~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~l------p~~~~-~~~~~~~~~i~~~~sy~l~~~p~ 333 (473)
T PLN03074 263 QKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLL------PRSGW-RDAAVILMLIHQFITFGFACTPL 333 (473)
T ss_pred hccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcC------CCchH-HHHHHHHHHHHHHHHHHHHHhhH
Confidence 9988 8888999999999999999999999998763 2566667 33333 56889999999999999999999
Q ss_pred HHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCC-------
Q 009772 411 FDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPT------- 482 (526)
Q Consensus 411 ~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~------- 482 (526)
.+.+|+....+ ..+..+.|.++|+.++++++++|+.+|+|+.+++|+||+++ .++|++|+++|++.++++
T Consensus 334 ~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~ 411 (473)
T PLN03074 334 YFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAA 411 (473)
T ss_pred HHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcc
Confidence 99999986432 23345788999999999999999999999999999999999 999999999999865432
Q ss_pred ------Ccch--hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccccccCC
Q 009772 483 ------KYSF--NWYFNWILGWLGVAF-SLAFSIGGLWSIVNSGLKLKFFK 524 (526)
Q Consensus 483 ------~~~~--~~~~~~~l~~~g~~~-~v~g~~~si~~ii~~~~~~~~f~ 524 (526)
..++ +.+.|+++++++.++ .+.|+|+|+++++++.++++.|.
T Consensus 412 ~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 412 EKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred cCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 1122 237899999865555 58999999999999999988764
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=4.7e-54 Score=451.81 Aligned_cols=392 Identities=26% Similarity=0.453 Sum_probs=330.9
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcC-CccccCHHHHHHHHhcc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVP-GKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~-g~r~~sY~~l~~~~~G~ 180 (526)
||+|++++++|++|+++|+|+|+||++|+++||+.|+++++++++++.||.++|+++++..+ +++..+|+|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999987532 34577999999999999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~ 260 (526)
+ ++++.++++...++|.|++|+++.+|++..+++...++ ...++..|.+++.++++|++++|++++++++|.+|+
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~ 155 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGL 155 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhh
Confidence 6 56667888888889999999999999999988876543 235677788888888999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc-cccchh
Q 009772 261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH-VPMWRG 339 (526)
Q Consensus 261 ~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~-~~m~~v 339 (526)
++.+.++++.++........++.+.. ..+.....++.+++.++|+++|||.||.++|++++|| |+|++ ++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~ 230 (409)
T PF01490_consen 156 FSIFYFIVIVVIYIISYGPGEPSGVP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKV 230 (409)
T ss_pred hccceeeeeecceeeeeecccccccc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCcccccccee
Confidence 87765423332322222222212111 0111234567899999999999999999999999999 78888 568899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhhc
Q 009772 340 AKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYT 419 (526)
Q Consensus 340 ~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~~ 419 (526)
...++.+++++|+.+|+.||++||+++++ |+++|+ +++++...++++++.++++.+||++.+|.++.+|+.+.
T Consensus 231 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~~-~il~n~------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 303 (409)
T PF01490_consen 231 LSISMIICFIIYLLFGIFGYLAFGDSVQG-NILLNL------PNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLF 303 (409)
T ss_pred eeehhhhhhHHhhhhhhcccceeeeeecc-hhhhcC------CCcccccccccccchhhhhhccccccchhHhhhhhhee
Confidence 99999999999999999999999999996 999999 44456778899999999999999999999999999986
Q ss_pred cc--------cccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcchhH--
Q 009772 420 SR--------TNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYSFNW-- 488 (526)
Q Consensus 420 ~~--------~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~~~~-- 488 (526)
++ .+++.++++|..+|+.++++++++|+.+|+++++++++|++++ .++|++|+++|+|.+++++.+.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~ 383 (409)
T PF01490_consen 304 KRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWW 383 (409)
T ss_pred ccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceee
Confidence 53 2233456889999999999999999999999999999999999 999999999999998877654433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Q 009772 489 ---YFNWILGWLGVAFSLAFSIGGL 510 (526)
Q Consensus 489 ---~~~~~l~~~g~~~~v~g~~~si 510 (526)
..+++.+++|++.++.|++.++
T Consensus 384 ~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 384 ILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhccceEEEEEeeehhHHhHHHHc
Confidence 3368888899999999988775
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-44 Score=369.16 Aligned_cols=400 Identities=19% Similarity=0.257 Sum_probs=326.2
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhccc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER 181 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~ 181 (526)
++.+.+.+++|+.|+++|+|+|++|+||++.|++.|++++.++++++.++.+++.++.++. ++| +|+++++.++|+.
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~--ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GER--TYSSLGDLIFGKL 80 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCC--CHHHHHHHHcCCC
Confidence 4578999999999999999999999999999999999999999999999999999998743 444 9999999999995
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCC-CCCcch-hhHHHHHHHHhhhcCCCcchhhHhHHHH
Q 009772 182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSN-PLTTVE-WYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (526)
Q Consensus 182 ~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~ii~~~v~~~L~~l~~l~~l~~~S~~~ 259 (526)
|+......+.....| |++|+++++|.+..+......+..... ..+++. |.++..++..||++.|+++++++.|.++
T Consensus 81 -g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s 158 (411)
T KOG1305|consen 81 -GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALS 158 (411)
T ss_pred -ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 666555555555566 699999999999976665443211001 122233 5677788889999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCC-CCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccch
Q 009772 260 AITAVTYSTMVWVLSVSQPR-PPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWR 338 (526)
Q Consensus 260 ~~~~~~~~~ii~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~ 338 (526)
.+..+..+.++++..+.... .++..+. ......+++++.++++++|||.||.++.++++|| |||++++|.+
T Consensus 159 ~~~~~~fv~~vv~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~ 230 (411)
T KOG1305|consen 159 LASVVYFVVLVVYKYFQGPCALGRLSYL----VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCcccc----cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHH
Confidence 98877766666665554322 1222222 1112233689999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhh
Q 009772 339 GAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASY 418 (526)
Q Consensus 339 v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~ 418 (526)
+...+...+.++|..+|.+||+.|||.+.+ |++.++.......-..+....++..+.++.+.++|+..+|+|..+++..
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~-n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~ 309 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKG-NLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELL 309 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchH-HHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 999999999999999999999999999995 9999983221111011235688999999999999999999999998887
Q ss_pred cccccc--ccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcchhHHHHHHHH
Q 009772 419 TSRTNR--PCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYSFNWYFNWILG 495 (526)
Q Consensus 419 ~~~~~~--~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~~~~~~~~~l~ 495 (526)
.+.... ..++.++.+++..++..+.+.|+.+|+++.+++++||+++ .++|++|+++|++..|+ .++++...+...
T Consensus 310 ~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~ 387 (411)
T KOG1305|consen 310 FPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFL 387 (411)
T ss_pred cccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHH
Confidence 554332 2456788899999999999999999999999999999999 99999999999999877 556677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 009772 496 WLGVAFSLAFSIGGLWSIVNSG 517 (526)
Q Consensus 496 ~~g~~~~v~g~~~si~~ii~~~ 517 (526)
++++.++++|++.-+.++..+.
T Consensus 388 ~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 388 ILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-44 Score=344.04 Aligned_cols=390 Identities=18% Similarity=0.260 Sum_probs=331.9
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhc--CC--cc-ccCHHHHHHH
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAV--PG--KR-YNRYVELAQA 176 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~--~g--~r-~~sY~~l~~~ 176 (526)
.+.+.++|..|+.|++-|.=+++||+|...+|| |++..++.++.+++||..+|++|.... .| .| .++|.+++..
T Consensus 115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 467899999999999999999999999999999 699999999999999999999996521 12 12 4699999999
Q ss_pred Hhcccch-hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHh
Q 009772 177 AFGERLG-VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGL 255 (526)
Q Consensus 177 ~~G~~~g-~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~ 255 (526)
+++++.| |++ ....++-.+.+|+.|++..||.++.-++. .+.+...|.++..+.++|.+++++++-.+.+
T Consensus 194 C~~P~lGgr~V-~~AQliELlmTCIlYvVv~gdLl~~~fP~--------~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~l 264 (524)
T KOG4303|consen 194 CYKPGLGGRWV-LAAQLIELLMTCILYVVVAGDLLQSCFPG--------LSVDKASWMMITSASLLPCSFLKDLKIVSRL 264 (524)
T ss_pred hcCCCcchhee-eHHHHHHHHHHHHhhhheechhhhccCCC--------CCccccchhhhhhHHHhhhHHHHHHHHHHHH
Confidence 9999988 554 55666677999999999999999865543 3466889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 009772 256 SLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (526)
Q Consensus 256 S~~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~ 335 (526)
|++..+.-++.-++++.+|..+... ++ |.......+..+++.++|+++|+|..|..+|.++.+| ++|++++
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~~d----W~-wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn 335 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFVSD----WS-WSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----cc-ceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe
Confidence 9999998888777777787765321 22 1122223456678889999999999999999999999 8999998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFE 415 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le 415 (526)
..+.++=+..+++-..+|..||++||+++++ .|.+|+ ++ .-...+++++.++..++|||+-.+...+.+|
T Consensus 336 --~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tqe-vItnnL------p~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe 405 (524)
T KOG4303|consen 336 --VMLKWSHIAAAVFKVVFGMLGFLTFGELTQE-VITNNL------PN-QSFKILVNLFLVVKALLSYPLPFYAAVELLE 405 (524)
T ss_pred --eeeehHHHHHHHHHHHHHHheeeeechhhHH-HHhcCC------Cc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHH
Confidence 7888998889999999999999999999997 999998 33 2456788999999999999999999999999
Q ss_pred hhhccccccc--------cc--cchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCc
Q 009772 416 ASYTSRTNRP--------CS--IWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKY 484 (526)
Q Consensus 416 ~~~~~~~~~~--------~~--~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~ 484 (526)
+.+....++. .. +-+...+|+.+++++.++|+.+|+|..++|++|++++ .++|+.|++||++++.+...
T Consensus 406 ~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~ 485 (524)
T KOG4303|consen 406 NNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLN 485 (524)
T ss_pred HhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhh
Confidence 9775433221 11 2334578999999999999999999999999999999 99999999999999888777
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 009772 485 SFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKL 520 (526)
Q Consensus 485 ~~~~~~~~~l~~~g~~~~v~g~~~si~~ii~~~~~~ 520 (526)
..++..+..++++|..+++.|.|.|...+|+.....
T Consensus 486 ~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~ 521 (524)
T KOG4303|consen 486 NFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSA 521 (524)
T ss_pred hHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhcc
Confidence 788889999999999999999999999999987654
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-31 Score=280.10 Aligned_cols=392 Identities=18% Similarity=0.180 Sum_probs=295.5
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhccc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER 181 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~ 181 (526)
.+.+..++++++.+++||+|+|++|++++..|+.++++++++.+.+++++.+++.|+.++.+. +..+|.+++++.+||+
T Consensus 7 ~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 7 KTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDYLGKK 85 (415)
T ss_pred CCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHhCcc
Confidence 467889999999999999999999999999999999999999999999999999999876543 2259999999999996
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHH
Q 009772 182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI 261 (526)
Q Consensus 182 ~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~ 261 (526)
++++..+.+...++|.+.+|.+.++|.+..+++..... .+..+..+.+++..+..++++.++...++..|.+...
T Consensus 86 -~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 86 -GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 56666888888899999999999999999998875442 1145667778888888889999999999999999988
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC-cchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhh
Q 009772 262 TAVTYSTMVWVLSVSQPRPPNISYEPLSSASP-AATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGA 340 (526)
Q Consensus 262 ~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~ 340 (526)
.+...++...+..... .... .. ..... ...+..+..++|++.|||.||+++++++++| |+++++..+|+.
T Consensus 161 ~v~~~~~l~~~~~~~~-~~~~--l~--~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~ 231 (415)
T COG0814 161 KVIYLVLLVVYLIPHW-NPAN--LF--ALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHhccc-CHHH--Hh--cccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHH
Confidence 7665555443332221 1111 11 00011 3567789999999999999999999999999 666665567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccC-------CCCchHHHHHHHHHHHHHHHhhhhccchhHHHH
Q 009772 341 KVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHS-------HDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDS 413 (526)
Q Consensus 341 ~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~-------~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~ 413 (526)
.++..+..++|..+++++|..+|+.+++ |++++..+..+ ...........+++..+++.+||--.....+|.
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~-~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~ 310 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFG-NILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEG 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHh
Confidence 9999999999999999999999999995 99998832100 001112333455666666777766666666777
Q ss_pred HHhhhcccc--ccccccchhh--hhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcchhH
Q 009772 414 FEASYTSRT--NRPCSIWVRS--GFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYSFNW 488 (526)
Q Consensus 414 le~~~~~~~--~~~~~~~~r~--~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~~~~ 488 (526)
+++.+..++ +.++..+.+. ....+.++....++...+..+.+++.+|+... .+.++.|...+.|....++++..+
T Consensus 311 ~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~ 390 (415)
T COG0814 311 LADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNF 390 (415)
T ss_pred hhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCc
Confidence 777665311 1111222222 22333456677777888999999999999999 999999999988876544444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009772 489 YFNWILGWLGVAFSLAFSIGG 509 (526)
Q Consensus 489 ~~~~~l~~~g~~~~v~g~~~s 509 (526)
..+++++++|+..++...++.
T Consensus 391 ~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 391 LLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777666543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=2.8e-24 Score=221.12 Aligned_cols=353 Identities=12% Similarity=0.064 Sum_probs=250.7
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
++++++.+.+++.+..+.||+|+|+||.+-+..|+.+++++++++++...||..++.|.+.+.+ +..++..++++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcC
Confidence 4457899999999999999999999999999999999999999999999999999999976443 35699999999999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhc--CCCcchhhHhHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSL 257 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~--l~~l~~l~~~S~ 257 (526)
|+ |+++..++...+.++.+++|+.-+|+.+++.++. .+ .+.+...-.++|.++.-.+.+ .+..+.+..+-.
T Consensus 85 ~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~-----~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~ 157 (414)
T PRK10483 85 KG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MS-----LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVL 157 (414)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cC-----CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 95 7788888888888999999999999999988876 22 123334334455554433333 233333333333
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 009772 258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (526)
Q Consensus 258 ~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~ 337 (526)
.+.+.++.. .+.....+...++.... . ......+..+..+++++.+||..|+++|++.+.++ +|++ +.+
T Consensus 158 ~~~i~~f~~---~~~~l~~~i~~~~L~~~--~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir 226 (414)
T PRK10483 158 GAKVITFFL---TFGSLLGHVQPATLFNV--A-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIV 226 (414)
T ss_pred HHHHHHHHH---HHHHHHhhcCHHHHhcc--c-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHH
Confidence 333322221 11111111111111000 0 01112345678999999999999999999999994 3333 455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-----------cCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009772 338 RGAKVAYLFIAMCLFPVAIGGFWA-----------YGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIY 406 (526)
Q Consensus 338 ~v~~~a~~i~~~~Y~~~gi~Gy~~-----------fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~ 406 (526)
|++.++..+..++|+..=...... -|++.+ ..+..+.. ..+..+...+..++..+++.+||--.
T Consensus 227 ~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~--~L~~~l~~---~~~~~~i~~~~~~Fa~~Ai~TSFlGv 301 (414)
T PRK10483 227 KCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID--VLVQALSG---VLNSRSLDLLLVVFSNFAVASSFLGV 301 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH--HHHHHHHH---hcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997643322222 222221 22333321 12233555678889999999999999
Q ss_pred chhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhchhhhHhhHHHHHhhCC
Q 009772 407 SMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPF-LSSLAGLLGGLTLPVTFAYPCFMWVLIKKP 481 (526)
Q Consensus 407 ~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~~vi~lvGa~~~~l~filP~l~~lk~~~~ 481 (526)
....+|.+.+.++.+++ ...|.....+.++...++|...|+ |-..+++.|.++..+..++|++|.+|.||+
T Consensus 302 ~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 302 TLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999865432 223555556678899999999998 888999999875588899999999999875
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=2.3e-23 Score=216.17 Aligned_cols=371 Identities=15% Similarity=0.178 Sum_probs=255.0
Q ss_pred CCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccc
Q 009772 103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (526)
Q Consensus 103 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~ 182 (526)
+.+.+.+++.+..+.||+|+|+||++.+..|..++++++++++..+++|..++.|...+.++ ..+|.+++++.+||+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~- 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK- 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH-
Confidence 46789999999999999999999999999999999999999999999999999999764333 569999999999996
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHH
Q 009772 183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAIT 262 (526)
Q Consensus 183 g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~ 262 (526)
|+++..+..+...++.+++|+.-.++.+++.+....+. +.+++.-..++.++...+... .-+...+++.+-+..
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~-----~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~ 152 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT-----DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFG 152 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 66666777777889999999999999999998875431 223333233333332222211 222333333222222
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHH
Q 009772 263 AVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKV 342 (526)
Q Consensus 263 ~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~ 342 (526)
.+......+...+.+.+.++... ......++...+.+++++.+||..|+++|++.+.++ ++++ +.+|++.+
T Consensus 153 ~i~~~~~l~~~~~p~~~~~~L~~----~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~ai~~ 223 (394)
T PF03222_consen 153 MIISFIILVVYLIPHWNPSNLLD----APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKAIII 223 (394)
T ss_pred HHHHHHHHHHHHhhhcCHHHhhc----cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHHHHH
Confidence 22211112122222222122211 122346778889999999999999999999999994 2333 44599999
Q ss_pred HHHHHHHHHHHHH--HHHH---------HhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHH
Q 009772 343 AYLFIAMCLFPVA--IGGF---------WAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVF 411 (526)
Q Consensus 343 a~~i~~~~Y~~~g--i~Gy---------~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~ 411 (526)
+..+..++|+..- +.|- ..-|++.. .+...+.+ ..++.+...+..++-.+++.+||--...-++
T Consensus 224 Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~--~~~~~~~~---~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~ 298 (394)
T PF03222_consen 224 GSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVS--ALVSALAN---VSGSPWISILGSIFAFFAIATSFLGVYLGLF 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChH--HHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887543 3331 11122211 23333311 1233456667899999999999999999999
Q ss_pred HHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccc-hHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcc-h--
Q 009772 412 DSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPF-LSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYS-F-- 486 (526)
Q Consensus 412 ~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~-~-- 486 (526)
|.+++.++.++ ....|.....+..+.+.++|...|+ |-..+++.| ... .+..++|+++.+|.|++++.. .
T Consensus 299 d~l~d~~k~~~----~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~ 373 (394)
T PF03222_consen 299 DFLADLFKLKN----NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRV 373 (394)
T ss_pred HHHHHHHcCCc----cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEE
Confidence 99999886522 1234555556667788999999998 889999999 777 999999999999998655432 1
Q ss_pred --hHHHHHHHHHHHHHH
Q 009772 487 --NWYFNWILGWLGVAF 501 (526)
Q Consensus 487 --~~~~~~~l~~~g~~~ 501 (526)
.+....+++++|++.
T Consensus 374 ~gg~~~l~~~~~~~i~i 390 (394)
T PF03222_consen 374 PGGNFTLLLVIIFGILI 390 (394)
T ss_pred eCcHHHHHHHHHHHHHH
Confidence 234445555555544
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=2.1e-23 Score=214.49 Aligned_cols=376 Identities=12% Similarity=0.068 Sum_probs=256.7
Q ss_pred CCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccc
Q 009772 103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (526)
Q Consensus 103 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~ 182 (526)
|.+.+.+++.+..++||+|+|+||.+-+..|+.+++++++++++.+.||..++.|++.+.+ +..++..++++.+||+
T Consensus 8 ~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~- 84 (415)
T PRK09664 8 KHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNT- 84 (415)
T ss_pred ccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChH-
Confidence 5578889999999999999999999999999999999999999999999999999976543 3579999999999995
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcC--CCcchhhHhHHHHH
Q 009772 183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL--PNLNSIAGLSLIGA 260 (526)
Q Consensus 183 g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l--~~l~~l~~~S~~~~ 260 (526)
|+++..+....+.++.+++|+.-+|+.+++.++...+ .+.+...-.++|+.+.-.+.+. +..+.+..+-+.+.
T Consensus 85 g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-----~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 85 WNIISGITVAFVLYILTYAYISANGAIISETISMNLG-----YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 8888888888888999999999999999998865322 1223333334444444333322 33333333333222
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhh
Q 009772 261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGA 340 (526)
Q Consensus 261 ~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~ 340 (526)
+..+. . .+.....+-..++....++ +......+..+..++|++.+||..|+++|++.+.++ +++++.+ |.+
T Consensus 160 ii~f~--~-~~~~l~~~i~~~~L~~~~~-~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~~--kaI 230 (415)
T PRK09664 160 IISFV--I-VFGSFFFQVDYSILRDATS-TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKLI--KSV 230 (415)
T ss_pred HHHHH--H-HHHHHhhcccHHHHhcCcc-ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHHH--HHH
Confidence 22222 1 1111111111111110000 000011133577899999999999999999999994 3344444 888
Q ss_pred HHHHHHHHHHHHH--HHHHH---------HHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchh
Q 009772 341 KVAYLFIAMCLFP--VAIGG---------FWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMP 409 (526)
Q Consensus 341 ~~a~~i~~~~Y~~--~gi~G---------y~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p 409 (526)
..+..+..++|+. .++.| -...|++++ .++..+.+ ..+..+...+..++..+++.+||--....
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~--~l~~s~~~---~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LG 305 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD--SLVKSFLG---TKQHGIIEFCLLVFSNLAVASSFFGVTLG 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch--HHHHHHHh---hccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888843 33333 122333333 33333321 12334666778899999999999999999
Q ss_pred HHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhchhhhHhhHHHHHhhCC-CCcc--
Q 009772 410 VFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPF-LSSLAGLLGGLTLPVTFAYPCFMWVLIKKP-TKYS-- 485 (526)
Q Consensus 410 ~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~~vi~lvGa~~~~l~filP~l~~lk~~~~-~~~~-- 485 (526)
.+|.+.+.++.++++ ..|.....+.+++..++|.+.|+ |-..++..|..+..+..++|++|-+|.||+ ....
T Consensus 306 L~D~l~D~~~~~~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~~~~y~ 381 (415)
T PRK09664 306 LFDYLADLFKIDNSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFT 381 (415)
T ss_pred HHHHHHHHhCCCCcc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCce
Confidence 999999988554321 24555556778899999999998 888999999964488899999999999875 2221
Q ss_pred --hhHHHHHHHHHHHHHHHHH
Q 009772 486 --FNWYFNWILGWLGVAFSLA 504 (526)
Q Consensus 486 --~~~~~~~~l~~~g~~~~v~ 504 (526)
..+...++.+++|++..+.
T Consensus 382 v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 382 VWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred eeCCHHHHHHHHHHHHHHHHH
Confidence 1234455555666555443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=3e-23 Score=214.42 Aligned_cols=374 Identities=16% Similarity=0.126 Sum_probs=260.8
Q ss_pred CChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccch
Q 009772 104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (526)
Q Consensus 104 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g 183 (526)
++.+.+++.+..+.||+|+|+||.+.+..|+.++++++++++.+..|+.+++.|+..+.+ +..++.+++++.+||+ |
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~--~~~~~~~~a~~~LG~~-g 79 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP--ADTGLGTLAKRYLGRY-G 79 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCHHHHHHHHhChH-H
Confidence 467899999999999999999999999999999999999999999999999999755332 2568999999999996 6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHH-
Q 009772 184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAIT- 262 (526)
Q Consensus 184 ~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~- 262 (526)
+++..+......+..+++|+.-+|+.+.+.+..+.+. +.+...+.+++.++.....+. ..+...+++-+=+..
T Consensus 80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-----~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ 153 (403)
T PRK15132 80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-----SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAK 153 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-----CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 6667778888889999999999999999888765432 233445555555544332222 223333332221111
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHH
Q 009772 263 AVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKV 342 (526)
Q Consensus 263 ~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~ 342 (526)
.+.++..+ ...+.+.+.++.... + .+...+..+++++.+||..|+++|++.+.++ +++ ++.+|++.+
T Consensus 154 ii~~~~~~-~~l~p~~~~~~L~~~-----~--~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~--~~~~k~i~~ 220 (403)
T PRK15132 154 IIFLVVML-ALMMPHIHKVNLLTL-----P--LQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNI--RKLRWVFII 220 (403)
T ss_pred HHHHHHHH-HHHHHhcCHHHHhcC-----C--ccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCH--HHHHHHHHH
Confidence 11111111 111222111111110 0 0111378899999999999999999999993 233 345599999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-----CC----hhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHH
Q 009772 343 AYLFIAMCLFPVAIGGFWAYGNLM-----PS----GGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDS 413 (526)
Q Consensus 343 a~~i~~~~Y~~~gi~Gy~~fG~~~-----~~----g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~ 413 (526)
+..+..++|+..=......-+.+. ++ +++++.+.+. .+..+...++.++..+++.+||--.....+|.
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~ 297 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV---VASPHVELAVHLFADLALATSFLGVALGLFDY 297 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999766555544433221 11 2455555321 22346667888999999999999999999999
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhchhhhHhhHHHHHhhCCC---Ccc--hh
Q 009772 414 FEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPF-LSSLAGLLGGLTLPVTFAYPCFMWVLIKKPT---KYS--FN 487 (526)
Q Consensus 414 le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~~vi~lvGa~~~~l~filP~l~~lk~~~~~---~~~--~~ 487 (526)
+.+.+.++++ ...|.....+.++.+.++|...|+ |...+++.|.....+.+++|+++.+|.|+++ +++ ..
T Consensus 298 l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg 373 (403)
T PRK15132 298 LADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAGYRVKGG 373 (403)
T ss_pred HHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCC
Confidence 9998854322 123566667788999999999998 8889999887544999999999999998654 222 13
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009772 488 WYFNWILGWLGVAFSLAFS 506 (526)
Q Consensus 488 ~~~~~~l~~~g~~~~v~g~ 506 (526)
+..+++++++|++..+.-.
T Consensus 374 ~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 374 RPALALVFLCGIAVIGIQF 392 (403)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5567777777776655433
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=5.4e-23 Score=214.28 Aligned_cols=347 Identities=14% Similarity=0.105 Sum_probs=248.4
Q ss_pred HHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhHHHH
Q 009772 109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLAL 188 (526)
Q Consensus 109 a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~~~~ 188 (526)
+++.++++++|+|++++|.+++..|+..+.+++++.++++.++..++.++..+.++ ..+|.++++++|||+.| ++..
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~--~~~~~~~~~~~~G~~~g-~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG--GASFNTIAKDLLGKTGN-IIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCHHHH-HHHH
Confidence 34567899999999999999999999999999999999999999999999776553 45999999999999654 4445
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHHHHHHHH
Q 009772 189 FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYST 268 (526)
Q Consensus 189 ~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~~~~~~~ 268 (526)
......++..+++|.+..++.+..+++..... ......+.+++.+++..+. .+..+..++++.+.+...+...+
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~ 152 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF-----PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFA 152 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHH
Confidence 56666679999999999999999887754321 1222233333333333333 45667778877777665554444
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHH
Q 009772 269 MVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIA 348 (526)
Q Consensus 269 ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~ 348 (526)
++++.+..+.+.++. .+. ......+.++..++++..++|.+|.+++++.+++ +++ ++++.|++.++..+++
T Consensus 153 ~~ii~~~~~~~~~~~--~~~--~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 153 LVFSGLLPHVKGDLL--LDV--ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHhhccHHHH--hcC--ccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHH
Confidence 333333333221111 100 0112345678899999999999999999999999 545 5566799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------hhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhhc
Q 009772 349 MCLFPVAIGGFWAYGNLMPS---------GGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYT 419 (526)
Q Consensus 349 ~~Y~~~gi~Gy~~fG~~~~~---------g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~~ 419 (526)
++|+.+........+.+.-. ++.++.+.. .....+...+..++..+++++|+.-.....+|.+.+.++
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~ 300 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQG---VLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFK 300 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998876665555432210 012222210 012234556778889999999999999999999988886
Q ss_pred cccccccccchhhhhHHHHHHHHHHHHHhccchH-HHHHHhhhhhh-chhhhHhhHHHHHhhCC
Q 009772 420 SRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLS-SLAGLLGGLTL-PVTFAYPCFMWVLIKKP 481 (526)
Q Consensus 420 ~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~-~vi~lvGa~~~-~l~filP~l~~lk~~~~ 481 (526)
+++++ .+|.....+..++..++|.+.|+.. ..++..| +.+ .+.+++|+++++|.||+
T Consensus 301 ~~~~~----~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 301 FDDSK----KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred CCccc----CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 53322 2355566667788899999999866 8999999 667 99999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.86 E-value=5.2e-19 Score=182.17 Aligned_cols=386 Identities=13% Similarity=0.091 Sum_probs=250.0
Q ss_pred HHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhHHHHH
Q 009772 110 AFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALF 189 (526)
Q Consensus 110 ~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~~~~~ 189 (526)
...+..+.||+|+|+||......|..++++++++++.+++|+...|.|.....+ ++..+|.+++++.|||++|.+. .+
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-~~~~~i~~v~~~~lG~~g~~i~-~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-NPSGNITETVEEHFGKTGGVVI-TF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCCHHHHHHHHcChhHHHHH-HH
Confidence 388999999999999999999999999999999999999999999999865331 2356999999999999866655 55
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHHH-HHHHH
Q 009772 190 PTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITA-VTYST 268 (526)
Q Consensus 190 ~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~~-~~~~~ 268 (526)
..+...+..+.+|...+.+.+.+++.+..+. ...++....+++.++........ -+.+-+++-+=+... +.+..
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~~----~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~ 177 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLGF----APLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFIASLVL 177 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----CCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 6666669999999988888888765554321 12333333344443333322222 133333322211111 11111
Q ss_pred hhhhhhcccCCCCCCCCCCC---CCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC---CCC--ccccchhh
Q 009772 269 MVWVLSVSQPRPPNISYEPL---SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK---HPA--HVPMWRGA 340 (526)
Q Consensus 269 ii~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k---~p~--~~~m~~v~ 340 (526)
+. ...+-+...++....++ ...........+..+++++.|||.-|+.+|++...+|.+-+ +++ +++.+|++
T Consensus 178 l~-~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii 256 (443)
T PRK13629 178 IS-LSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQII 256 (443)
T ss_pred HH-HHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHH
Confidence 11 11122222111111100 00000112245788999999999999999999999532201 223 56667999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC------CChhHhHhhhhccCCC-Cc-----hHHHHHHHHHHHHHHHhhhhccch
Q 009772 341 KVAYLFIAMCLFPVAIGGFWAYGNLM------PSGGMLRALFQFHSHD-IS-----RGLLAVTFLLVVFNCLSSFQIYSM 408 (526)
Q Consensus 341 ~~a~~i~~~~Y~~~gi~Gy~~fG~~~------~~g~il~~l~~~~~~~-~~-----~~~~~~~~~~~~i~~l~sypl~~~ 408 (526)
..+..+..++|+..-+.+...-+++. ++++++..+.+..+.. .. .++..+..++..+++.+||--...
T Consensus 257 ~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~L 336 (443)
T PRK13629 257 SRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYL 336 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877766665433 1135455553322211 11 245566778888899999999999
Q ss_pred hHHHHHHhhhcc---cc-cc-ccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCC
Q 009772 409 PVFDSFEASYTS---RT-NR-PCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPT 482 (526)
Q Consensus 409 p~~~~le~~~~~---~~-~~-~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~ 482 (526)
-.+|.++....+ +. ++ ...+..+.....+.++.++++|..-|++-.+++-+|+=-. .+.|++|...-.|...-+
T Consensus 337 Gl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~ 416 (443)
T PRK13629 337 GTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLA 416 (443)
T ss_pred HHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHH
Confidence 999999988732 11 11 1223445566667778899999999998888885555555 899999998887774433
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 009772 483 KYSFNWYFNWILGWLGVAFSLA 504 (526)
Q Consensus 483 ~~~~~~~~~~~l~~~g~~~~v~ 504 (526)
+++.+ ..|+++.+.|++....
T Consensus 417 ~yr~~-~~n~fv~~~Gl~~i~~ 437 (443)
T PRK13629 417 KYRGR-LDNVFVTVIGLLTILN 437 (443)
T ss_pred HhCCC-chhHHHHHHHHHHHHH
Confidence 33322 3578888888765443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.82 E-value=1.5e-18 Score=179.93 Aligned_cols=377 Identities=12% Similarity=0.079 Sum_probs=244.6
Q ss_pred HHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhHHH
Q 009772 108 YAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLA 187 (526)
Q Consensus 108 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~~~ 187 (526)
.=.+.+..+++|+|+|++|...++.||...++..++.+.+.+++..++.|..-..+ ....++.|++++.|||++|+++.
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-NPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHcCHHHHHHHH
Confidence 34678889999999999999999999998888888888888999888888843221 12469999999999998888775
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHHHHHHH
Q 009772 188 LFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYS 267 (526)
Q Consensus 188 ~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~~~~~~ 267 (526)
....++ .+..+.+|....++.+.+++...... +...+....+..++++........+.+.+++.+-+...+...
T Consensus 86 ~lY~~~-~~~i~~aY~~~~~~~~~~fl~~~~~~-----~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l 159 (397)
T TIGR00814 86 LLYFFA-IYPILLIYSVAITNDSASFLVNQLGT-----APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL 159 (397)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 544444 48889999999999998887764431 111221222222222223334466666666665553333322
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC--ccccchhhHHHHH
Q 009772 268 TMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA--HVPMWRGAKVAYL 345 (526)
Q Consensus 268 ~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~--~~~m~~v~~~a~~ 345 (526)
.++....+.+...++....| .....+.++..++++..+||.+|++++++..+.+.+-++|+ +++.+|++..+..
T Consensus 160 ~~l~~~lip~~~~~~L~~~p----~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~ 235 (397)
T TIGR00814 160 VLLSLYLIPHWNGANLTTFP----SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASL 235 (397)
T ss_pred HHHHHHHHHHcCHHHHhcCC----cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 22222333222212221110 01124568899999999999999999999833321103233 4556699999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-----C-hhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhhc
Q 009772 346 FIAMCLFPVAIGGFWAYGNLMP-----S-GGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYT 419 (526)
Q Consensus 346 i~~~~Y~~~gi~Gy~~fG~~~~-----~-g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~~ 419 (526)
+..++|+..-+.+....+++.- + -+++..+.+. .+..+...+..++..+++.+||--...-++|.+++.+.
T Consensus 236 i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~---~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 236 ILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANH---FNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999998888777777664331 1 0223322111 12234556677888889999999999999999999873
Q ss_pred c-ccc---cccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcchhHHHHHHH
Q 009772 420 S-RTN---RPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYSFNWYFNWIL 494 (526)
Q Consensus 420 ~-~~~---~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~~~~~~~~~l 494 (526)
+ ++. +..++..+.....+.++.++.+|..-|++-.+++-+|+=-. .+.|++|...-.|...-++++.+ ..|+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~-~~~~fv 391 (397)
T TIGR00814 313 NSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR-ISNVFV 391 (397)
T ss_pred HHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-cchhee
Confidence 1 111 11223344555566778889999999998888885554444 88999999887776433333322 246666
Q ss_pred HHHHH
Q 009772 495 GWLGV 499 (526)
Q Consensus 495 ~~~g~ 499 (526)
.+.|+
T Consensus 392 ~~~g~ 396 (397)
T TIGR00814 392 TVIGL 396 (397)
T ss_pred Eeeec
Confidence 66554
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.48 E-value=1.2e-10 Score=123.66 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=137.8
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
++|+-+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+.|. .-.....+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~--~GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK--SGGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCchHHHHHHHcC
Confidence 35678999999999999999999999999988886 46777777777777666666776443332 2244556789999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcc-hhhHHHHHHH-HhhhcCCCcchhhHhHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTV-EWYLVFTSLC-IVLSQLPNLNSIAGLSL 257 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ii~~~v~-~~L~~l~~l~~l~~~S~ 257 (526)
|++|.+......+.. .....++.+...+.+..++.. ..+.. .+.+...++. +...-.+..+..+.+..
T Consensus 81 ~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~~~~~---------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~ 150 (438)
T PRK10655 81 KSGNFMANYTYGVSL-LIANVAIAISAVGYGTELFGA---------TLSPVQICLATIGVLWLCTVANFGGARITGQISS 150 (438)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc---------ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 988876655433322 212222222222333322211 01111 1222111111 11112334444444444
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 009772 258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (526)
Q Consensus 258 ~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~ 337 (526)
+.....+...+++.+.+......++.... +. ......+.++..++....|+|.|-..+..+-+|+ |+|+| ++.
T Consensus 151 i~~~~~l~~l~~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP 223 (438)
T PRK10655 151 VTVWGVIIPVVGLSIIGWFWFSPSLYVAA-WN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVP 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCC-cC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-ccc
Confidence 33332222122111211111111111110 11 1111224567778889999999999999999999 88865 456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 009772 338 RGAKVAYLFIAMCLFPVAIGGF 359 (526)
Q Consensus 338 ~v~~~a~~i~~~~Y~~~gi~Gy 359 (526)
|++..+..++.++|++......
T Consensus 224 rAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 224 IAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765443
No 17
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.41 E-value=9.9e-10 Score=117.72 Aligned_cols=248 Identities=15% Similarity=0.085 Sum_probs=136.5
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAF-LGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
|+-+.++.+...++++||+|++.+|....+ .|....++..++.++..........|...+.|+.. ....+.+++.||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 456889999999999999999999987654 45333444566666766666677777655444311 1344458899999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHH-HHhhhcCCCcchhhHhHHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLIG 259 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v-~~~L~~l~~l~~l~~~S~~~ 259 (526)
..|........+....+ ..+|.....+.+..+++.... ..+...+.+...++ .+.....+..+..+++..+.
T Consensus 80 ~~gf~~gw~~w~~~~~~-~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~ 152 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLG-NVAYATLLFSTLGYFFPIFGG------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTIT 152 (468)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccC------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 88887665433322122 233433333333322221110 01111122111111 11122245666666665554
Q ss_pred HHHHHHHHHhhhhhhc--ccCCCCCCC-CCCCC-CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 009772 260 AITAVTYSTMVWVLSV--SQPRPPNIS-YEPLS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (526)
Q Consensus 260 ~~~~~~~~~ii~~~~i--~~~~~~~~~-~~~~~-~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~ 335 (526)
.+..+...+++++.++ .++..-..+ ++... .......+.++..++....|+|.|-.....+-+|. |+ +++
T Consensus 153 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~ 226 (468)
T TIGR03810 153 TIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--ccc
Confidence 4333222111111111 111110001 00000 00011234566788899999999999988888888 65 345
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG 363 (526)
+.|++..+..++.++|..+.+..+...+
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 5699999999999999988876654443
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.41 E-value=1.2e-09 Score=115.92 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=138.6
Q ss_pred ccccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 99 TESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 99 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
+++|+-+.++.+...++++||+|++.+|...++.|-. .++..++.++..........|...+.|.. ....+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~--GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ--GGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHH-H
Confidence 3567889999999999999999999999999988863 55566666666666666666665544432 233445566 7
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHH-HHhhhcCCCcchhhHhHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSL 257 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v-~~~L~~l~~l~~l~~~S~ 257 (526)
|+++|............++ ..++.+...+.+..+++... .+. ..+.+...++ .+.+...+..+..+.+..
T Consensus 78 g~~~gf~~gw~~~~~~~~~-~~~~~~~~~~y~~~~~p~~~------~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~ 148 (435)
T PRK10435 78 SPAFGFQTGVLYYHANWIG-NLAIGITAVSYLSTFFPVLN------DPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTT 148 (435)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccccC------ChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9988776544322111122 22333333344433322110 011 1111111111 111222444455555544
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 009772 258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (526)
Q Consensus 258 ~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~ 337 (526)
+..+..+...+..+..+..+..+++...+ +. ........++..++....|+|.|-..+...-+|+ |+|+| ++.
T Consensus 149 i~~~~~li~~~~~~i~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iP 221 (435)
T PRK10435 149 IGLVLVLIPVVGTAIVGWHWFDAATYAAN-WN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVP 221 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHhhccc-cc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-ccc
Confidence 44433222211111122211111111001 11 1112346788999999999999999999999999 88854 455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 009772 338 RGAKVAYLFIAMCLFPVAIGGFWA 361 (526)
Q Consensus 338 ~v~~~a~~i~~~~Y~~~gi~Gy~~ 361 (526)
|++..+..+++++|+...+.....
T Consensus 222 rAi~~~~~iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 222 LATMLGTGLAGIIYIAATQVISGM 245 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998877655433
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.40 E-value=6e-10 Score=119.56 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=141.6
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+-+.+++++..+++++|+|++.+|......|-. ..++..++.++..........|...+.|++ .....+.+++.+|
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~-sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL-DGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCChhhhHHhHcc
Confidence 46789999999999999999999999998765532 234445566666666666666665444431 1234456799999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcch-hhHHHHHH-HHhhhcCCCcchhhHhHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVE-WYLVFTSL-CIVLSQLPNLNSIAGLSL 257 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~v-~~~L~~l~~l~~l~~~S~ 257 (526)
|++|........... .....++.....+.+..+++.... ..... +.....++ .....-.+..+..+++..
T Consensus 85 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~-------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~ 156 (473)
T TIGR00905 85 PYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFPLFGS-------GNPVPSILGASVLLWVFTFLVLRGVRQAAFINT 156 (473)
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcC-------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 998887766543332 222344444444555544442111 01111 11111111 111223556666666666
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCC--CCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 009772 258 IGAITAVTYSTMVWVLSVSQPRPPNI--SYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (526)
Q Consensus 258 ~~~~~~~~~~~ii~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~ 335 (526)
+.....+...+++++..+.....++. ++.+.........+..+..++....|+|.|-.....+-+|+ |+ +++
T Consensus 157 ~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~r~ 230 (473)
T TIGR00905 157 ITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--KSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--ccc
Confidence 55543332222222212111111111 11100000112245677888999999999999999999999 66 345
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFW 360 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~ 360 (526)
..|++..+..++.++|.........
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5699999999999999887765433
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.40 E-value=1.4e-09 Score=115.81 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=133.7
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
++|+-+.++++...+++++|+|++.+|...+..|.. .+...++.++........+.|...+.|. .....+-+++.+|
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~--aGG~y~~~~~~~g 82 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPS--PGGSYAYARRCFG 82 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCChhHHHHHHcC
Confidence 446789999999999999999999999999888753 4444555555555555666666544442 1133334888999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhh--cCCCcchhhHhHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSL 257 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~--~l~~l~~l~~~S~ 257 (526)
|.+|.+......+....+ ..+......+.+..+++.. .......++..++++.+. -....|..+++..
T Consensus 83 ~~~gf~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~ 152 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIG-NIAMVVIGVGYLSYFFPIL---------KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc---------CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 988876544333222122 2222222223332222210 011111111111111222 2334455555554
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 009772 258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (526)
Q Consensus 258 ~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~ 337 (526)
+..+..+...+++..........++...+ +. .........+..++....|+|.|-......-+|+ |+|+| ++.
T Consensus 153 i~~~~~~i~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iP 225 (445)
T PRK10644 153 VATVLALIPIVGIAVFGWFWFRGETYMAA-WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVP 225 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhccCC-cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chh
Confidence 44433322222111111111111111100 10 1111234566778888999999999999999999 88865 456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 009772 338 RGAKVAYLFIAMCLFPVAIGGF 359 (526)
Q Consensus 338 ~v~~~a~~i~~~~Y~~~gi~Gy 359 (526)
|++..+..+++++|+++.+.-.
T Consensus 226 rai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 226 IATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876643
No 21
>PRK11021 putative transporter; Provisional
Probab=99.40 E-value=1.3e-09 Score=114.93 Aligned_cols=229 Identities=14% Similarity=0.172 Sum_probs=135.2
Q ss_pred ChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchh
Q 009772 105 NAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGV 184 (526)
Q Consensus 105 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~ 184 (526)
+.++++...++++||+|++.+|....+.+-..+++..++.++..........|...+.|+ .-.....+++.|||++|.
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~--aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH--AGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHhHHHHhCchhHH
Confidence 568899999999999999999987766543356667777777777777777777655553 235556788999999888
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHH-HHHhhhcCCCcchhhHhHHHHHHHH
Q 009772 185 WLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS-LCIVLSQLPNLNSIAGLSLIGAITA 263 (526)
Q Consensus 185 ~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~-v~~~L~~l~~l~~l~~~S~~~~~~~ 263 (526)
............+.. +........+..+ .+. . ....+.+...+ +.+-+.-.+..+..+++..+..+..
T Consensus 80 ~~gw~~~~~~~~~~~-~~~~~~~~~~~~~----~~~----~--~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~ 148 (410)
T PRK11021 80 VTGWLFLSVIPVGLP-AALQIAAGFGQAL----FGW----S--SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLI 148 (410)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHHH----cCC----C--CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 776654432222222 2222222333222 111 0 01112211111 1111223445555555544433222
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHH
Q 009772 264 VTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVA 343 (526)
Q Consensus 264 ~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a 343 (526)
+.. +.+.....+....+.... .....++.++..++....|+|.|...+...-+|+ |||+| ++.|++..+
T Consensus 149 ~~i--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~ 217 (410)
T PRK11021 149 VAL--VVAIWWAGDIKPADIPFP----APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIG 217 (410)
T ss_pred HHH--HHHHHHHcCCchhcCCCC----CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHH
Confidence 111 111111111111111111 1122456788999999999999999999999999 88865 456999999
Q ss_pred HHHHHHHHHHHHHH
Q 009772 344 YLFIAMCLFPVAIG 357 (526)
Q Consensus 344 ~~i~~~~Y~~~gi~ 357 (526)
..++.++|+++.+.
T Consensus 218 ~~~~~~lYil~~~~ 231 (410)
T PRK11021 218 LLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 22
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.39 E-value=1.4e-10 Score=120.02 Aligned_cols=338 Identities=13% Similarity=0.150 Sum_probs=191.1
Q ss_pred CCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccc
Q 009772 103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (526)
Q Consensus 103 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~ 182 (526)
+-|.+|..+.++++++|+|++.+|...++.+---+.+..++.++......+++.+...+.|+ .+..|..++++||+.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~---~~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE---KNFSEILSKYLGKIL 78 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhhHHH
Confidence 46788999999999999999999998776443345556677777777888888888766664 278999999999998
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHH-HHHHhhhcCCCcchhhHhHHHHHH
Q 009772 183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFT-SLCIVLSQLPNLNSIAGLSLIGAI 261 (526)
Q Consensus 183 g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~~~L~~l~~l~~l~~~S~~~~~ 261 (526)
|+.+......+. +..+.......++.++ ....+ +...|.+... .+.......+.++.++.++.+-..
T Consensus 79 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~-------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 79 GRLLSILFILYF-FLIAAYLIRIFADFIK----TYLLP-------RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI 146 (359)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHhcC-------CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 998765444333 3333222223333332 22111 1223333222 222223345677888877776654
Q ss_pred HHHHH-HHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 009772 262 TAVTY-STMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNAL-GIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG 339 (526)
Q Consensus 262 ~~~~~-~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v 339 (526)
..+.. ..++......+.+.++ ..|. ...++.++..+. ....++|.+...+..+..++ |+|++ .+|.
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~--l~P~----~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~ 214 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKN--LLPV----LENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKS 214 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHH--ccCc----cccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHH
Confidence 44333 1222222222211111 1111 112344555544 37788999888888888888 66655 4499
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCC---hhHhHhhhhccCCCCchHHHH---HHHHHHHHHHHhhhhccchhHHHH
Q 009772 340 AKVAYLFIAMCLFPVAIGGFWAYGNLMPS---GGMLRALFQFHSHDISRGLLA---VTFLLVVFNCLSSFQIYSMPVFDS 413 (526)
Q Consensus 340 ~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~---g~il~~l~~~~~~~~~~~~~~---~~~~~~~i~~l~sypl~~~p~~~~ 413 (526)
...+..+++++|...-+.....+|.+..+ -+..+..... +-++..-. +.-..-....+.+.-++.+.....
T Consensus 215 ~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i---~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~ 291 (359)
T TIGR00912 215 IIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLI---NIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKG 291 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888754331 0122221110 11222211 222333455556666677777788
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhh---hhh-chhhhHhhHHHHHhh
Q 009772 414 FEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGG---LTL-PVTFAYPCFMWVLIK 479 (526)
Q Consensus 414 le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa---~~~-~l~filP~l~~lk~~ 479 (526)
+.+.++.++++ ..+.-... +.+.++ ..||-..-...... ..+ +..+++|.++++..+
T Consensus 292 ~~~~~~~~~~~------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 292 LSKLFKKRKYS------ILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHHHhCCCCcc------hhHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877544322 11221111 222333 34552221222221 233 677789998776653
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=99.35 E-value=3.3e-09 Score=113.36 Aligned_cols=238 Identities=14% Similarity=0.065 Sum_probs=136.4
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
.+|+-+.++.....++.+||+|++.+|-... ..|- ..++..++.+++....+.-+.|...+.|. ...+.+.+++.+
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~--~Gg~~~y~~~~~ 95 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV--SGSFAHFAYKYW 95 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHh
Confidence 3467888999999999999999999876555 4464 46677777788888888888887665554 336777899999
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~ 258 (526)
|+.+|........+.. .....+.....+..++. +.++ .....+.+++..+.. +.-.+..+..+.+...
T Consensus 96 g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~----~~~~------~~~~~~~~~~~~l~~-~lN~~gv~~~~~i~~~ 163 (458)
T PRK10249 96 GPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQY----WFPD------VPTWIWAAAFFIIIN-AVNLVNVRLYGETEFW 163 (458)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----cCCc------CcHHHHHHHHHHHHH-HHHHhcchhhhhHHHH
Confidence 9988887766433222 22222222222322221 1111 111222222222111 1223344444443322
Q ss_pred HHHHHH----HHHHhhhhhhcccCCC-CCCCCCC-CC-CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 009772 259 GAITAV----TYSTMVWVLSVSQPRP-PNISYEP-LS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331 (526)
Q Consensus 259 ~~~~~~----~~~~ii~~~~i~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p 331 (526)
..+.-+ ...++.+.. +..+.. +..+.+. ++ ....+..+.++..++....|+|.|-..+...-+|+ |+|
T Consensus 164 ~~~ikv~~i~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P 238 (458)
T PRK10249 164 FALIKVLAIIGMIGFGLWL-LFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDP 238 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCH
Confidence 221111 111111111 111111 1111110 11 11123456678899999999999999999999999 888
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHH
Q 009772 332 AHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (526)
Q Consensus 332 ~~~~m~~v~~~a~~i~~~~Y~~~gi~G 358 (526)
+| ++.|++..+...+.++|......-
T Consensus 239 ~k-~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 239 EK-SIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 456999999999999997654443
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.34 E-value=1.4e-09 Score=115.17 Aligned_cols=244 Identities=16% Similarity=0.087 Sum_probs=147.6
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFL-GWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~-G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+-+.++.++..+++++|+|++.+|...... |. ..++..++.+++.......+.|...+.|+ .....+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPV--AGSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCcceeeHHHHhC
Confidence 36788999999999999999999999765543 43 34555666677777777777777554443 2234455778899
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCC---CCCCCCCcch--hhHHHHHHHHhhhcCCCcchhhH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPL---CSSNPLTTVE--WYLVFTSLCIVLSQLPNLNSIAG 254 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~---~~~~~~~~~~--~~ii~~~v~~~L~~l~~l~~l~~ 254 (526)
|+.|........+.. ...+..+....++.+..++.....+. +......... +..+...+.+-+...+..+..++
T Consensus 79 ~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 988887766544433 34455555666677666654321110 0000000000 11111111122223456677777
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 009772 255 LSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334 (526)
Q Consensus 255 ~S~~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~ 334 (526)
++.+.....+...+++++.+..+...+ ++.+ ..+....++..++....|+|.|...+....+|+ |+|+|
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r- 226 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASN--NYTP----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER- 226 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCC----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-
Confidence 766665544433332223333222211 1221 112345678888999999999999999999999 78854
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHH
Q 009772 335 PMWRGAKVAYLFIAMCLFPVAIGGF 359 (526)
Q Consensus 335 ~m~~v~~~a~~i~~~~Y~~~gi~Gy 359 (526)
+..|++..+..++.++|........
T Consensus 227 ~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 227 DIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4559999999999999998875544
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.30 E-value=6.4e-09 Score=110.99 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=141.3
Q ss_pred ccccCCChhHHHHHHHhhhhhhhhchhH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHH
Q 009772 99 TESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (526)
Q Consensus 99 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~ 177 (526)
+.+|+-+.++..+..++++||+|++.+| .+.+..|- .+++..++.+++.......+.|...+.|. ...+.+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Confidence 3557889999999999999999999999 67778886 46777777788777777777777655443 23667789999
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHH-hhhcCCCcchhhHhH
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCI-VLSQLPNLNSIAGLS 256 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~-~L~~l~~l~~l~~~S 256 (526)
+|+.+|........... ...+.+.....+..++.+ .++ ...|.....++.+ .+.-....+..+.+.
T Consensus 86 ~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~----~~~--------~~~~~~~~~~~~~~~~~n~~gv~~~~~~~ 152 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQYW----FPD--------IPLWLFSLILTIVLTLTNLYSVKSYGEFE 152 (452)
T ss_pred hCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----cCc--------CcHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 99988887655443332 233334444444444422 211 1233322222211 111223344444443
Q ss_pred HHHHHHHHHHHH--hhhhh-hcccCCCC-C-CCCCCCC--CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 009772 257 LIGAITAVTYST--MVWVL-SVSQPRPP-N-ISYEPLS--SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (526)
Q Consensus 257 ~~~~~~~~~~~~--ii~~~-~i~~~~~~-~-~~~~~~~--~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k 329 (526)
....+..+...+ +++.. ....+.+. + ..+.+.. ....+..+.++..++....|+|.|-..+..+-+|+ |
T Consensus 153 ~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k 228 (452)
T TIGR01773 153 FWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----S 228 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----c
Confidence 332222111111 11111 01111111 1 1111100 11112345578999999999999999999999999 8
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 009772 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGGF 359 (526)
Q Consensus 330 ~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy 359 (526)
+|+| ++.|++..+.....++|+.......
T Consensus 229 ~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 229 NPIK-SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 8865 4568888888888888887654433
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.29 E-value=6.8e-09 Score=111.25 Aligned_cols=239 Identities=15% Similarity=0.117 Sum_probs=133.1
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
.+|+-+.++.....++++||+|++..|. ++++.|. ..++..++++++......-+.|..... .+..++.+.+++.+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~--~~~~~~~~ya~~~~ 94 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN--LEYKSFSDFASDLL 94 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHh
Confidence 4567899999999999999999999765 7777777 455566666666666666566654321 22346778999999
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~ 258 (526)
|+..|........+.. .-...+.....+..+.. +.++ .....+.+++..++..+ -....+..+.+..+
T Consensus 95 g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~----~~p~------~~~~~~~~~~~~~~~~i-N~~g~~~~~~i~~~ 162 (469)
T PRK11049 95 GPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQF----WFPD------LSDWVASLAVVLLLLSL-NLATVKMFGEMEFW 162 (469)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----hcCC------CcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHH
Confidence 9988887766544332 11222223333333322 2211 11222222222222222 23334444444433
Q ss_pred HHHHHHHHHHhhhhhh---cccC--CCCC--CCCCC-CCC-CCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 009772 259 GAITAVTYSTMVWVLS---VSQP--RPPN--ISYEP-LSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (526)
Q Consensus 259 ~~~~~~~~~~ii~~~~---i~~~--~~~~--~~~~~-~~~-~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k 329 (526)
..+..+...+++++.+ ...+ .+.+ ..+++ ++. ...+..+.++..++....|+|.|-..+...-+|+ |
T Consensus 163 ~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 238 (469)
T PRK11049 163 FAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----K 238 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----c
Confidence 3322221111111111 1111 1111 11111 111 1112345678899999999999999999999999 8
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHH
Q 009772 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (526)
Q Consensus 330 ~p~~~~m~~v~~~a~~i~~~~Y~~~gi~G 358 (526)
+|+| ++.|++..+...+.++|.+....-
T Consensus 239 nP~r-~iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 239 DPEK-SLPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred CHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 455888766667777777555443
No 27
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.26 E-value=1e-08 Score=109.20 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=131.0
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHHH-HHhchH-HHHHHHHHHHHHHHHHHHHHHHchhhcCCc-cccCHHHHHHHH
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAF-AFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGK-RYNRYVELAQAA 177 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~giill~~~~~~~~~t~~lL~~~~~~~~g~-r~~sY~~l~~~~ 177 (526)
+|+-+.++.....++.++|+|++..|... +..|-. ..++..++.+++.........|.....|.. ....| .+++
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~~ 83 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKNA 83 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHHh
Confidence 46789999999999999999999999864 445532 344445556666666666666664433321 12344 5678
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHh--hhcCCCcchhhHh
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIV--LSQLPNLNSIAGL 255 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~--L~~l~~l~~l~~~ 255 (526)
+|+.+|..................+....++.+.. ..+ .....+..+...+.+. ..-.+..+..+++
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~----~~~-------~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF----LTP-------IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC-------CchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99987776655433222122233344444444332 111 1111111111111111 1224455555555
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 009772 256 SLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (526)
Q Consensus 256 S~~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~ 335 (526)
..+..+..+...+++++.++.....++.+...........++.++..++....|+|.|-.....+-+|+ |+|+| +
T Consensus 153 ~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~ 227 (445)
T PRK11357 153 QTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK-T 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-c
Confidence 444433332222111121111111111110000000111235677888999999999999999999999 88865 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGG 358 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~G 358 (526)
+.|++..+..+++++|.+.....
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999998776543
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.25 E-value=2e-08 Score=107.71 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=132.6
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHHH-HHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAF-AFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+-+.++.....++.+||+|++..|... +..|-...++..++.+++.+....-+.|...+.|. .-.+...+++++|
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~--aGG~y~y~~~~~g 90 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE--TGAFHVYAARYLG 90 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHhcC
Confidence 46789999999999999999998877664 56674334556666777777777777777555543 2356677889999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~ 259 (526)
+.+|........+.. ...+.......+..+. .+.+ ......+.+++.+++..+ -.+..+..+.+....
T Consensus 91 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~~~p------~~~~~~~~~~~~~~~~~i-n~~gvk~~~~~~~~~ 158 (471)
T PRK11387 91 PATGYTVAWLYWLTW-TVALGSSLTAAGFCMQ----YWFP------QVPVWPWCLLFCALIFGL-NVVSTRFFAEGEFWF 158 (471)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----hccC------cCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 988876555433322 1222111222222221 1111 111122222222222222 233344444333222
Q ss_pred HHHHHHHHHhhhhhh---c---ccCCCCC--CCCCCCC-CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCC
Q 009772 260 AITAVTYSTMVWVLS---V---SQPRPPN--ISYEPLS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKH 330 (526)
Q Consensus 260 ~~~~~~~~~ii~~~~---i---~~~~~~~--~~~~~~~-~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~ 330 (526)
.+..+...+++++.+ + ......+ ...+.+. .+..+....++..++....|+|.|-..+...-+|+ |+
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----kn 234 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----EN 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cC
Confidence 111111111111110 0 0000000 0011001 11112234567888888999999999999999999 88
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 009772 331 PAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAY 362 (526)
Q Consensus 331 p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~f 362 (526)
|+| ++.|++..+..++.++|+...+......
T Consensus 235 P~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~ 265 (471)
T PRK11387 235 PAK-VIPVAIRTTIARLVIFFVGTVLVLAALI 265 (471)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 865 5669999999999999988765543333
No 29
>PRK15049 L-asparagine permease; Provisional
Probab=99.25 E-value=2.4e-08 Score=107.68 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=132.0
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+-+.++..+..+..+||+|++..|. +++..|- .+++..++.+++.+..+.-+.|.....|. .....+-+++.+|
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G 103 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG 103 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence 456788999999999999999988877 6666675 45677777777777777777777655543 3366777899999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHH-hhhcCCCcchhhHhHHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCI-VLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~-~L~~l~~l~~l~~~S~~ 258 (526)
+++|........+.. ...+..-....+..+. .+ +. - . ....|.....++++ .+.-....+....+..+
T Consensus 104 ~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~----~~-~~-~--~--~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~ 172 (499)
T PRK15049 104 EKAAYVAGWMYFINW-AMTGIVDITAVALYMH----YW-GA-F--G--GVPQWVFALAALTIVGTMNMIGVKWFAEMEFW 172 (499)
T ss_pred cHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----Hh-cc-C--C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876655443322 1111111111121111 11 10 0 0 12233322222111 11112333444443333
Q ss_pred HHHHHHHHHHh--hh-hhhcccCCCCCC---CCCCC--CCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCC
Q 009772 259 GAITAVTYSTM--VW-VLSVSQPRPPNI---SYEPL--SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKH 330 (526)
Q Consensus 259 ~~~~~~~~~~i--i~-~~~i~~~~~~~~---~~~~~--~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~ 330 (526)
..+..+...+. ++ ...+..+.+.+. .+... .....+..+..++.++....|+|.|-..+...-+|+ |+
T Consensus 173 ~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----kn 248 (499)
T PRK15049 173 FALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cC
Confidence 22111111111 11 111111111100 01000 011112344556677778999999999999999999 88
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHH
Q 009772 331 PAHVPMWRGAKVAYLFIAMCLFPVAIGGF 359 (526)
Q Consensus 331 p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy 359 (526)
|+| ++.|++..++..+.++|+.......
T Consensus 249 P~r-~iPrAi~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 249 PQT-MVPKAINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 865 4568998888888888877655443
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=99.25 E-value=2.6e-08 Score=106.42 Aligned_cols=356 Identities=11% Similarity=0.054 Sum_probs=182.0
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+-+.++..+..+.++||+|++..|.. .+..|- ..++..++.+++.+....-+.+.....|. ...+.+.+++.+|
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~g 85 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYMS 85 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhC
Confidence 4678899999999999999999886654 455665 45566666777777777777777655553 3377888999999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH-
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI- 258 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~- 258 (526)
+++|........+. ....+.+.....+..++. +.+ ......|..++..+...+. .+..+..+.+...
T Consensus 86 ~~~Gf~~gw~~~~~-~~~~~~~~~~a~~~~l~~----~~p------~~~~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~ 153 (461)
T PRK10746 86 PFFGYLTAWSYWFM-WMAVGISEITAIGVYVQF----WFP------EMAQWIPALIAVALVALAN-LAAVRLYGEIEFWF 153 (461)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----ccC------CCchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 98887665533222 122233333333333332 211 1222233333222222221 2233333332221
Q ss_pred ---HHHHHHHHHHhhhhhh-cccCCC-CCCCCCCCC--CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 009772 259 ---GAITAVTYSTMVWVLS-VSQPRP-PNISYEPLS--SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331 (526)
Q Consensus 259 ---~~~~~~~~~~ii~~~~-i~~~~~-~~~~~~~~~--~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p 331 (526)
-++..+...++.+... ...+.. +....+.+. ....+..+.++..++....|+|.|-..+...-+|+ |+|
T Consensus 154 ~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP 229 (461)
T PRK10746 154 AMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNP 229 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cCh
Confidence 1111111111111110 111111 111111111 11123456788899999999999999999999999 888
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCC--C-hhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccch
Q 009772 332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMP--S-GGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSM 408 (526)
Q Consensus 332 ~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~--~-g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~ 408 (526)
+| ++.|++..++..+.++|.............+.. + .+....+.+. .. .....+.++.+.+..+.+.--..+
T Consensus 230 ~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~---g~-~~~~~i~~~~il~a~~s~~n~~~~ 304 (461)
T PRK10746 230 QV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI---GI-TAAAGIINFVVLTAALSGCNSGMY 304 (461)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh---Cc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 567998888888888887754433333322111 1 1222222111 11 122233444454555544433333
Q ss_pred hHHHHHHhhhcc--------ccccccccchhh-hhHHHHHHHHHHHHHhccchHHHHHHhhhhhh---chhhhHhhHHHH
Q 009772 409 PVFDSFEASYTS--------RTNRPCSIWVRS-GFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL---PVTFAYPCFMWV 476 (526)
Q Consensus 409 p~~~~le~~~~~--------~~~~~~~~~~r~-~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~---~l~filP~l~~l 476 (526)
..-+.+...-.+ +.++ +....+. ++.....++...+....|+-+.+++.+-+++. .+.+++.++.++
T Consensus 305 ~~sR~l~~~a~~g~lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i 383 (461)
T PRK10746 305 SCGRMLYALAKNRQLPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQL 383 (461)
T ss_pred HHHHHHHHHHhCCCcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322111 1111 1111122 22222222333344445665665555444432 789999999999
Q ss_pred HhhCC
Q 009772 477 LIKKP 481 (526)
Q Consensus 477 k~~~~ 481 (526)
+.||+
T Consensus 384 ~~r~~ 388 (461)
T PRK10746 384 RFRRA 388 (461)
T ss_pred HHHHh
Confidence 98764
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.24 E-value=2.7e-08 Score=113.88 Aligned_cols=249 Identities=13% Similarity=0.102 Sum_probs=146.9
Q ss_pred ccccCCChhHHHHHH-Hhhhhhhhhch-hHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhh-cCCccccCHHHHHH
Q 009772 99 TESRNGNAHYAAFHN-LNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA-VPGKRYNRYVELAQ 175 (526)
Q Consensus 99 ~~~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~-~~g~r~~sY~~l~~ 175 (526)
.+.++-+++.+++.- +.+++|+|+.. +++...+.|...+++++++.++++..|..-+.+...+ .+. .--.| .+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y-~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAY-YLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHH-HHHH
Confidence 344567788887777 99999999955 7788889998888888999999999998888877653 221 01133 3467
Q ss_pred HHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCC-CcchhhHHHHHHHHhhhcCCCcchhhH
Q 009772 176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPL-TTVEWYLVFTSLCIVLSQLPNLNSIAG 254 (526)
Q Consensus 176 ~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ii~~~v~~~L~~l~~l~~l~~ 254 (526)
++||+.+|..+.....+.. ...+..|.+..++.+..++........ .... ..+.+.+++.+++..+. ....+..++
T Consensus 151 ralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~~~~~~~~-~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak 227 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLRENGSKIM-VDPINDIRIYGTVTVVVLLGIS-FAGMEWENK 227 (953)
T ss_pred HHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 8899988887766544444 455677888788887776643211000 0011 11222222222222222 334444444
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccCC-CCC---CCCCC--CCCC--CC-cchHHHHHHHHHHHHHhhccccchHHHHhhCC
Q 009772 255 LSLIGAITAVTYSTMVWVLSVSQPR-PPN---ISYEP--LSSA--SP-AATVFSVMNALGIIAFAFRGHNLAMEIQATMP 325 (526)
Q Consensus 255 ~S~~~~~~~~~~~~ii~~~~i~~~~-~~~---~~~~~--~~~~--~~-~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~ 325 (526)
+..+..+..+...+.+++.++.... ... ..+++ +... .. .....++...++++.+||.|......+-.|+
T Consensus 228 ~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl- 306 (953)
T TIGR00930 228 AQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4443333222211111121111110 000 00000 0000 00 1111237778899999999999999999999
Q ss_pred CCCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 009772 326 STFKHPAHVPMWRGAKVAYLFIAMCLFPVAIG 357 (526)
Q Consensus 326 ~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~ 357 (526)
|+|++ .+.+++..++.+++++|+++.+.
T Consensus 307 ---KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 307 ---KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred ---cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 88865 46699999999999999998753
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.24 E-value=3.1e-08 Score=105.90 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=133.6
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
.+|+-+.++..+..+.+++|+|++.+|.. .+..|- ..++..++.++........+.+...+.|. .....+.+++.+
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~--~Gg~y~y~~~~~ 83 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA--ASSFSRYAQENL 83 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHc
Confidence 34678899999999999999999999876 445564 45777777777778888778887655553 235555789999
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~ 258 (526)
||.+|........+.. ...+.+.....+..+. .+.++ .....|.+.+.++.. ....+..+..+.+..+
T Consensus 84 G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~ 151 (457)
T PRK10580 84 GPLAGYITGWTYCFEI-LIVAIADVTAFGIYMG----VWFPT------VPHWIWVLSVVLIIC-AVNLMSVKVFGELEFW 151 (457)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HhCCC------CChHHHHHHHHHHHH-HHHHccchhHHHHHHH
Confidence 9988887766443322 1222221222222222 12111 112233322222222 2223344544444333
Q ss_pred HHHHHHHHHHh-------hhhhhcccC-CCCCCCCCCCC-CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 009772 259 GAITAVTYSTM-------VWVLSVSQP-RPPNISYEPLS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (526)
Q Consensus 259 ~~~~~~~~~~i-------i~~~~i~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k 329 (526)
..+..+...++ ++.....+. .+.+.+.. +. ....+..+.++..++....|+|.|-..+...-+|+ |
T Consensus 152 ~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----k 226 (457)
T PRK10580 152 FSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNL-WSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----K 226 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-CCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----c
Confidence 22211111110 111111111 11111110 11 11123345678889999999999999999999999 8
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHH
Q 009772 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIG 357 (526)
Q Consensus 330 ~p~~~~m~~v~~~a~~i~~~~Y~~~gi~ 357 (526)
+|+| ++.|++..+...+.++|......
T Consensus 227 nP~k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 227 DPEK-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 44588877777777788666433
No 33
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.24 E-value=8.5e-10 Score=114.52 Aligned_cols=366 Identities=11% Similarity=0.087 Sum_probs=213.1
Q ss_pred cccccCCChhHHHHHHHhhhhhhhhchhHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHH
Q 009772 98 ITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLG--WSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQ 175 (526)
Q Consensus 98 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~ 175 (526)
.+.+|+-+.+.+++.+++.+||+|+..-|......+ ...++++.++.++++......-.|.....++ .-.+|. -..
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~a-yi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYA-YIS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchh-hHH
Confidence 445578899999999999999999999999887665 4567777788889999888888887544321 111333 255
Q ss_pred HHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhh-HHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhH
Q 009772 176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGET-MKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAG 254 (526)
Q Consensus 176 ~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~ 254 (526)
++||+.++........+...-..+..+-+..++. ++.+++ . |. ..+...-.++.+++.+....|.-++++
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----c~----~p~~~~~lla~~~l~~lt~~n~~~V~~ 156 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----CD----VPRVASKLLAAALLVLLTLINSFSVKW 156 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----CC----CchHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 6799988877666655555344445566666665 555544 2 31 122233233333333333566666666
Q ss_pred hHHHHHHHHH---HHHHhhhhhhccc---CCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 009772 255 LSLIGAITAV---TYSTMVWVLSVSQ---PRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (526)
Q Consensus 255 ~S~~~~~~~~---~~~~ii~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~ 328 (526)
.+.+-.++++ ....++++.++.. +..++.+.+ .......+..++..++=.-.|||.|-..+=-+-+|+
T Consensus 157 a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~--~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi---- 230 (479)
T KOG1287|consen 157 ATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENS--EFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI---- 230 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccc--ccccCcCchHHHHHHHHHhhhcccCchhhccchHhh----
Confidence 6555444333 2222333333332 222222111 012223455568888888999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009772 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG--NLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIY 406 (526)
Q Consensus 329 k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG--~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~ 406 (526)
|+|.| ++.+++.+++.+++++|+++=+..+.+-- +-..+.-+--.+.+. --+++. .+.-+++.+..+.+.--.
T Consensus 231 knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~---~~G~~~-~~ip~~ValS~~G~~n~~ 305 (479)
T KOG1287|consen 231 KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADR---ILGVFA-WAIPFSVALSLIGSLNSV 305 (479)
T ss_pred cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHH---hccchH-HHHHHHHHHHhhhhhhhH
Confidence 88854 67799999999999999988766543321 111110111112110 111222 233444555544444433
Q ss_pred chhHHHHHHhhhccccccc-----cccchh-hhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhh
Q 009772 407 SMPVFDSFEASYTSRTNRP-----CSIWVR-SGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIK 479 (526)
Q Consensus 407 ~~p~~~~le~~~~~~~~~~-----~~~~~r-~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~ 479 (526)
++..-..+...-.+. +-| .+.+.. -....++..+..++..++.|++.+++.++=... ...+.+=+++|+|.+
T Consensus 306 ifs~SR~~~~~areG-~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k 384 (479)
T KOG1287|consen 306 IFSSSRLFYAGAREG-HLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK 384 (479)
T ss_pred HHHHHHHHHHHHHcc-CccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333322222211111 100 011110 112233445555666667799999999887766 778888899999998
Q ss_pred CCCCcch
Q 009772 480 KPTKYSF 486 (526)
Q Consensus 480 ~~~~~~~ 486 (526)
+++..++
T Consensus 385 ~p~~~rP 391 (479)
T KOG1287|consen 385 HPPLPRP 391 (479)
T ss_pred CCCCCCC
Confidence 8875543
No 34
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.23 E-value=3.7e-08 Score=107.47 Aligned_cols=363 Identities=12% Similarity=0.033 Sum_probs=188.3
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHHH--HHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAF--AFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~ 177 (526)
.+|+-+.++.+..-++.++|+|+..+|... ...|-. .++..++.++.+........|...+.|.. -..-.-++++
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~s--Gg~Y~y~~~~ 102 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKA--GSAYLYSYVT 102 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CcceeeHHHH
Confidence 457899999999999999999999999654 346753 45556667777777777777775544431 1222235677
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCC------CCCCCCCcchhh-HHHHHHHHhhhcCCCcc
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPL------CSSNPLTTVEWY-LVFTSLCIVLSQLPNLN 250 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~-ii~~~v~~~L~~l~~l~ 250 (526)
+|+.+|.+.....++....+ +.+.....++.+..++....+.. ............ .+...+.+.+...+..+
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~-~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIG-TAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 89987776655444333222 22222333444444433211100 000001111111 11111111222356677
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC--CCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 009772 251 SIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPL--SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (526)
Q Consensus 251 ~l~~~S~~~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~ 328 (526)
..+++..+..+..+...+++++.+..+...++...... .+...+..+.+++.++....|+|.|-..+...-+|+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~---- 257 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV---- 257 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc----
Confidence 77777666555444433333333333322222111000 001112345678899999999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC--C-CCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 009772 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG--N-LMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQI 405 (526)
Q Consensus 329 k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG--~-~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl 405 (526)
|+|+| ++.|++..+..+++++|..+.+.-...-. + +.++ .+...+.. ...++...+..+..++.++.+...
T Consensus 258 knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~-p~~~a~~~----~g~~~~~~ii~~~~~~~~~~sl~~ 331 (557)
T TIGR00906 258 KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDA-PFPVAFEY----VGWGPAKYIVAVGALCGMSTSLLG 331 (557)
T ss_pred cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCc-HHHHHHHH----cCchHHHHHHHHHHHHHHHHHHHH
Confidence 88865 45699999999999999887755332221 1 1121 33332311 112333344444455555544443
Q ss_pred cchhHHHHHHhhhcc--------ccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhhchhhhHhhHHHHH
Q 009772 406 YSMPVFDSFEASYTS--------RTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVL 477 (526)
Q Consensus 406 ~~~p~~~~le~~~~~--------~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~~l~filP~l~~lk 477 (526)
..+..-+.+...-.+ +.+++.....+. ..+..+++.+++.+. +++.+.++.. ++..+.|+++++..+.
T Consensus 332 ~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~A--il~~~iv~~il~~~~-~~~~l~~l~s-ig~ll~y~lv~~~~l~ 407 (557)
T TIGR00906 332 GMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINA--TVVSGAIAALMAFLF-DLKALVDLLS-IGTLLAYSLVAACVLI 407 (557)
T ss_pred HHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHH--HHHHHHHHHHHHHHc-CHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333333333322111 111111111111 112223334444433 4666665443 2338899999887777
Q ss_pred hhC
Q 009772 478 IKK 480 (526)
Q Consensus 478 ~~~ 480 (526)
+|+
T Consensus 408 lR~ 410 (557)
T TIGR00906 408 LRY 410 (557)
T ss_pred hhc
Confidence 764
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.21 E-value=1.5e-08 Score=109.59 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=136.2
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHH-HHHhchH-HHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~-~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~ 177 (526)
.+|+-+.++.....+++++|+|++..|.. .+..|-. ..++..++.+++.........|.....|. .-....-.++.
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~--sGG~y~~~~~~ 117 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK--SGGEYNYILEV 117 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCchhhhHHhH
Confidence 45678899999999999999999999876 4555632 22344455666666666666776544442 12344446778
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHH--HhhhcCCCcchhhHh
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC--IVLSQLPNLNSIAGL 255 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~--~~L~~l~~l~~l~~~ 255 (526)
+|+.+|.+...........+.+..+....++.+.. ....+ + ........++...+. +.+.-.+..+..+++
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~~~-~---~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVFPD-C---EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC-C---CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99988876655433222223333333333443211 11111 0 011111111111111 112224455666666
Q ss_pred HHHHHHHHHHHHHhhhhhhc---ccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 009772 256 SLIGAITAVTYSTMVWVLSV---SQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332 (526)
Q Consensus 256 S~~~~~~~~~~~~ii~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~ 332 (526)
..+.....+...+++++.++ ..+...+.+.+. .......+..++..++....|+|.|-..+..+-+|+ |+|+
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~ 265 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCch
Confidence 55544433322222222221 122111111110 000111345678889999999999999999999999 8885
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009772 333 HVPMWRGAKVAYLFIAMCLFPVAIGGFW 360 (526)
Q Consensus 333 ~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~ 360 (526)
| +..|++..+..+++++|+++.+.-..
T Consensus 266 r-~iPrAi~~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 266 R-TLPIAIIISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 45699999999999999988655433
No 36
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.21 E-value=3.1e-08 Score=105.82 Aligned_cols=236 Identities=14% Similarity=0.093 Sum_probs=132.1
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
.+|+-+.++..+..++++||+|++..|....+.|-...++..++.++..+....-+.|...+.|. ...+.+-+++.+|
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~--aGg~y~~~~~~~g 87 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV--AGSFSHFAYKYWG 87 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHcC
Confidence 34678899999999999999999888876655442345556666677776667777777554443 2366677888999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~ 259 (526)
|..|........+.. ...+.+.....++.++.. .++ .....+.+++..+...+. ....+..+.+..+.
T Consensus 88 ~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~~----~p~------~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~ 155 (456)
T PRK10238 88 SFAGFASGWNYWVLY-VLVAMAELTAVGKYIQFW----YPE------IPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWF 155 (456)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----cCc------CcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 987777665544433 333344444444444322 211 112223222222221121 22334444444333
Q ss_pred HHHHHHHHHhhhh---hhcccCC-CCCCCCCC-CCC-CCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 009772 260 AITAVTYSTMVWV---LSVSQPR-PPNISYEP-LSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (526)
Q Consensus 260 ~~~~~~~~~ii~~---~~i~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~ 333 (526)
.+..+...+++++ ..+..+. .+...... +++ ...+..+.++..+++...|+|.|-..+...-+|+ |+|+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r 231 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh
Confidence 2222211111111 1111111 11111110 011 1112345577788889999999999999999999 88865
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 009772 334 VPMWRGAKVAYLFIAMCLFPV 354 (526)
Q Consensus 334 ~~m~~v~~~a~~i~~~~Y~~~ 354 (526)
++.|++..+.....++|+..
T Consensus 232 -~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 232 -SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 45688887777777777554
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.20 E-value=6e-08 Score=103.26 Aligned_cols=237 Identities=15% Similarity=0.068 Sum_probs=133.3
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
+|+-+.++.....++.++|......+.+++..|+..-++..++.+++.......+.|...+.|. .-.....+++.+|+
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~--~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT--AGGGYGFARRAFGP 83 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHhCc
Confidence 3567888888888888998555666888999998644455555555555555666676555443 22555678899999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~ 260 (526)
.+|.+......+.. .....++....++.+..+++. .....+.+++..+.. +.-.+..+..+++..+..
T Consensus 84 ~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~~p~----------~~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 84 WGGFLAGTAILIEF-AFAPPAIACFIGAYCESLFPV----------GPGWLAALVFYIVFI-GINILGVGEAAKLEFVVT 151 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc----------CchhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 88777655443322 333445555556665543321 111122222111111 112334444444443332
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCC--CCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccch
Q 009772 261 ITAVTYSTMVWVLSVSQPRPPNISYEPL--SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWR 338 (526)
Q Consensus 261 ~~~~~~~~ii~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~ 338 (526)
+..+...+++++....+....+...+.. .....+..+.+++.++....|+|.|...+..+-+|+ |+|+| +..|
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~ipr 226 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPR 226 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCH
Confidence 2222211111111111111111100000 011112335578888889999999999999999999 88865 3459
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009772 339 GAKVAYLFIAMCLFPVAI 356 (526)
Q Consensus 339 v~~~a~~i~~~~Y~~~gi 356 (526)
++..+..++.++|+.+-.
T Consensus 227 ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 227 GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888888876644
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.18 E-value=3e-09 Score=112.60 Aligned_cols=382 Identities=13% Similarity=0.093 Sum_probs=189.2
Q ss_pred ChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHH-HHHHHHHHHchhhcCCccccCHHHHHHHHhcccch
Q 009772 105 NAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQ-LYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (526)
Q Consensus 105 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~-~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g 183 (526)
++++++...++.++|+|+...| .....|.. .++..++.+++. ........|...+.+. ......-+++++||++|
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~--~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS--AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS--STTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--cCeeeehhhhcccccch
Confidence 5788999999999999999999 77777764 444444444443 4445555555433332 23566778899999988
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHH--HHHHHhhhcCCCcchhhHhHHHHHH
Q 009772 184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVF--TSLCIVLSQLPNLNSIAGLSLIGAI 261 (526)
Q Consensus 184 ~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~--~~v~~~L~~l~~l~~l~~~S~~~~~ 261 (526)
........+.. ...+.++.....+.+...+.... ..+.....++. ..+...+.-.+..|..+++..+..+
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 149 (426)
T PF13520_consen 78 FIVGWLYWVAY-ILSLASVASSFASYLLSLFGPDL-------NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTV 149 (426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTGGG-------TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hcccceeEEEe-eccccccccchhhhhhhcccccc-------ccccchheeeeecccccceEeeechhhhhhhhhhhhhh
Confidence 77655443333 44444455545555443321100 01111121111 1111222235566666776665554
Q ss_pred HHH-HHHHhhhhhhcccCCCCCCCC-CCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 009772 262 TAV-TYSTMVWVLSVSQPRPPNISY-EPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG 339 (526)
Q Consensus 262 ~~~-~~~~ii~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v 339 (526)
..+ ....++++..+.....+.... +...+...+..+..++.++....|+|.|-.....+-+|+ |+ |+..|+
T Consensus 150 ~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~a 222 (426)
T PF13520_consen 150 IKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRA 222 (426)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHH
T ss_pred hhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheee
Confidence 444 222222223333222111100 000000111122346888999999999999999999999 54 345599
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCC--hh---HhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHH
Q 009772 340 AKVAYLFIAMCLFPVAIGGFWAYGNLMPS--GG---MLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSF 414 (526)
Q Consensus 340 ~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~--g~---il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~l 414 (526)
+..+..++.++|....+.-....+++..+ ++ ....+.+..+ ..+...+..+...+..+.+.........+.+
T Consensus 223 i~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 299 (426)
T PF13520_consen 223 IIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG---GSWLAIIVSIAAILSLFGSINAFIFGASRLL 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc---ccccccccccccccccccccchhhcchhhcc
Confidence 99999999999999877766655442211 12 1222211111 1234444455555555555555444444444
Q ss_pred Hhhhcccc-c---cccccchhhhhH--HHHHHHHHHHHHh---cc--chHHHHHHhhhhhhchhhhHhhHHHHHhhCCCC
Q 009772 415 EASYTSRT-N---RPCSIWVRSGFR--VFYGFVSFFIGVA---LP--FLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTK 483 (526)
Q Consensus 415 e~~~~~~~-~---~~~~~~~r~~~r--~~~~~~~~~iA~~---vP--~~~~vi~lvGa~~~~l~filP~l~~lk~~~~~~ 483 (526)
...-.++. + ++.+ ..+.=.+ .+..+++.++... .| +++.+.++ +++...+.|+++++.+++.+++++
T Consensus 300 ~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 300 YAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSL-SSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHH-HHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred cccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 43322110 0 0111 1111111 1122222222222 23 34444442 223337777777777776654333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009772 484 YSFNWYFNWILGWLGVAFSLAFSIGGL 510 (526)
Q Consensus 484 ~~~~~~~~~~l~~~g~~~~v~g~~~si 510 (526)
...+....+.+.+++++..++..+...
T Consensus 378 ~~~r~~~~~~~~i~~~~~~~~~~~~~~ 404 (426)
T PF13520_consen 378 DLKRIPYRPPVGIIGIIIILFVIIASF 404 (426)
T ss_dssp SSGH-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 222212223455555555555444433
No 39
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.15 E-value=1.5e-07 Score=101.33 Aligned_cols=237 Identities=12% Similarity=0.117 Sum_probs=136.1
Q ss_pred cCCChhHHHHHHHhhhhhhhhchhH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
|+-+.++.....+..++|+|++..| .+.+..|-...++..++.+++.+....-+.|...+.|. ....|.+.+++.+|+
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASRFVDP 80 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcCc
Confidence 5678889999999999999998755 56666664333555666677777777777777655552 123688889999999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~ 260 (526)
++|........+.. ...+.+.....+..+.. +.+ ......|..++.++.. +.-.+..+..+++..+..
T Consensus 81 ~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~ 148 (478)
T TIGR00913 81 AFGFAVGWNYWLQW-LIVLPLELVTASMTIQY----WTD------KVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFS 148 (478)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----cCC------CCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHH
Confidence 88877655433322 22233333333333331 111 1222334333222222 222444555555443332
Q ss_pred HHHH----HHHHhhhhhhcccCCCCC--CCC---C---CCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 009772 261 ITAV----TYSTMVWVLSVSQPRPPN--ISY---E---PLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (526)
Q Consensus 261 ~~~~----~~~~ii~~~~i~~~~~~~--~~~---~---~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~ 328 (526)
...+ .+.++.+.. ...+.++. ... . .+.+......+.++..++....|+|.|-..+..+-+|+
T Consensus 149 ~~ki~~l~~~ii~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~---- 223 (478)
T TIGR00913 149 SIKILAIIGFIILSIIL-NCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA---- 223 (478)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----
Confidence 2111 111111111 11111111 000 0 00000001135678889999999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHH
Q 009772 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIG 357 (526)
Q Consensus 329 k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~ 357 (526)
|+|+| ++.|++..+..++.++|....+.
T Consensus 224 knP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 224 ANPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88865 46699999999999999886543
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.12 E-value=7.5e-08 Score=102.54 Aligned_cols=224 Identities=14% Similarity=0.086 Sum_probs=126.3
Q ss_pred HhhhhhhhhchhHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhHHHHHHHH
Q 009772 114 LNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTV 192 (526)
Q Consensus 114 ~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~~~~~~i~ 192 (526)
++++||+|++..|. +.++.|- ..++..++.+++.......+.|...+.|. .....+.+++.+|+.+|........+
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD--TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 56899999999887 7778886 47778888888888888888888655543 23677778899999888876554433
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHHHHHHHHhhhh
Q 009772 193 YLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272 (526)
Q Consensus 193 ~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~~~~~~~ii~~ 272 (526)
.... .+.......+..++ .+.+ ......+.+++..+...+ -....|..+.+..+..+..+...+++++
T Consensus 81 ~~~~-~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~l~~~~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii 148 (446)
T PRK10197 81 FWVL-VIPLEANIAAMILH----SWVP------GIPIWLFSLVITLALTGS-NLLSVKNYGEFEFWLALCKVIAILAFIF 148 (446)
T ss_pred HHHH-HHHHHHHHHHHHHH----hccc------cCcHHHHHHHHHHHHHHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2211 11111122222221 1111 111112222222211111 1333444444433333222221111111
Q ss_pred hhc--ccCCCC-C--CCCCC-CC-CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHH
Q 009772 273 LSV--SQPRPP-N--ISYEP-LS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYL 345 (526)
Q Consensus 273 ~~i--~~~~~~-~--~~~~~-~~-~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~ 345 (526)
.++ ..+..+ . ....+ +. ....+..+.++..++....|+|.|-..+...-+|+ |+|+| ++.|++..++.
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~ 223 (446)
T PRK10197 149 LGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIW 223 (446)
T ss_pred HHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHH
Confidence 111 111111 0 00000 01 11123446688999999999999999999999999 88865 56699888999
Q ss_pred HHHHHHHHHHHH
Q 009772 346 FIAMCLFPVAIG 357 (526)
Q Consensus 346 i~~~~Y~~~gi~ 357 (526)
.+.++|+...+.
T Consensus 224 ~i~i~Yil~~~~ 235 (446)
T PRK10197 224 RISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHH
Confidence 999999876555
No 41
>PRK10836 lysine transporter; Provisional
Probab=99.05 E-value=7.3e-07 Score=96.16 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=132.9
Q ss_pred cccCCChhHHHHHHHhhhhhhhhchhHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
.+|+-+.++.....++++||+|++.+|. +.++.|-...++..++.++++...+.-+.|...+.|. .-.....+++.+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~--sGg~y~y~~~~~ 90 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV--SGSFATYGQNYV 90 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHc
Confidence 3467899999999999999999999996 6667776446777788888888888888888665553 335666677888
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~ 258 (526)
|+.+|........+ . ...+.+......+. ....+..+ .....+..++.+++..+ -....+..+.+..+
T Consensus 91 g~~~gf~~Gw~~~~-~-~~~~~a~~~~a~~~---~~~~~~~~------~~~~~~~~~~~~~~~~l-N~~gv~~~~~~~~~ 158 (489)
T PRK10836 91 EEGFGFALGWNYWY-N-WAVTIAVDLVAAQL---VMSWWFPD------TPGWIWSALFLGVIFLL-NYISVRGFGEAEYW 158 (489)
T ss_pred ChHHHHHHHHHHHH-H-HHHHHHHHHHHHHH---HhhhcCCC------CchHHHHHHHHHHHHHH-HHHcchhhhhhHHH
Confidence 98887766543222 1 22222211111111 11111111 11112222222222111 12233322222211
Q ss_pred ---HHHHHH-HHHH--hhhhhhcccCCCCCCCCCCCCC--CCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCC
Q 009772 259 ---GAITAV-TYST--MVWVLSVSQPRPPNISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKH 330 (526)
Q Consensus 259 ---~~~~~~-~~~~--ii~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~ 330 (526)
.-+..+ .+.+ ++...+..++.+ +...+.+.. ......+..+..+.....|+|.|-..+..+-+|+ |+
T Consensus 159 ~~~~ki~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----kn 233 (489)
T PRK10836 159 FSLIKVTTVIVFIIVGVLMIIGIFKGAE-PAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----ED 233 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cC
Confidence 111111 1111 111111111111 111111110 1112234556666666789999999999999999 88
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009772 331 PAHVPMWRGAKVAYLFIAMCLFPVAIGGFW 360 (526)
Q Consensus 331 p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~ 360 (526)
|+| ++.|++..++..+.++|......-..
T Consensus 234 P~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 234 PAK-NIPRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 855 56799999999999999877654433
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.03 E-value=1.3e-07 Score=96.30 Aligned_cols=284 Identities=15% Similarity=0.241 Sum_probs=168.9
Q ss_pred CChhHHHHHHHhhhhhhhhchhHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 104 GNAHYAAFHNLNAGVGFQALLLPVAFAFL---GWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 104 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
-|..|....+..+.+|+|++.+|...++. ||+. .++.++....-.+++.+..++.++ .+..|+.++.+||
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~----~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~~Gk 74 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS----VLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKLFGK 74 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH----HHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhCc
Confidence 46789999999999999999999998766 4643 344444555555555555554444 4899999999999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHH-HHHHHHhhhcCCCcchhhHhHHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLV-FTSLCIVLSQLPNLNSIAGLSLIG 259 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~~~v~~~L~~l~~l~~l~~~S~~~ 259 (526)
+.|+.+......+. +......+...+|.++.. ..+ +...|.+. ...++....-.+.++.++..+.+-
T Consensus 75 ~lg~ii~~~~~l~~-l~~~~~~lr~~~~~i~~~---~lp--------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 75 WLGKIINLLYILYF-LLISALVLREFSEFIKTY---LLP--------ETPIWVIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---hcC--------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998765544443 333333333333333321 111 13334333 233333344577888888765555
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 009772 260 AITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG 339 (526)
Q Consensus 260 ~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v 339 (526)
....+....++......+ .+++... +....++.+++.+.-...+.|.+-..+.-+...+ |+|++.. |.
T Consensus 143 ~~~~~i~~~~i~~~~~~~-----~~~~~l~-P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~~--k~ 210 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPN-----IDWDNLL-PVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKLK--KS 210 (320)
T ss_pred HHHHHHHHHHHHHHhccc-----CCHHHee-CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHHH--HH
Confidence 443333333333333322 2222111 1123556678888888888898888888889999 6665544 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCC---hhHhHhhhhccCCCCchHHHH---HHHHHHHHHHHhhhhccchhHHHH
Q 009772 340 AKVAYLFIAMCLFPVAIGGFWAYGNLMPS---GGMLRALFQFHSHDISRGLLA---VTFLLVVFNCLSSFQIYSMPVFDS 413 (526)
Q Consensus 340 ~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~---g~il~~l~~~~~~~~~~~~~~---~~~~~~~i~~l~sypl~~~p~~~~ 413 (526)
...+..+.+++|...-+.....||.+..+ -+.+.....- +-++..-. +.-..-....+.+.-++.+...+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i---~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~ 287 (320)
T PF03845_consen 211 LLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSI---EIGDFIERLDSIFILIWIIGIFIKISLYLYAASEG 287 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888864321 0121111000 11112111 122333444555566677777788
Q ss_pred HHhhhccc
Q 009772 414 FEASYTSR 421 (526)
Q Consensus 414 le~~~~~~ 421 (526)
+.+.++.+
T Consensus 288 ~~~~f~~~ 295 (320)
T PF03845_consen 288 LSQLFKLK 295 (320)
T ss_pred HHHHhCCC
Confidence 88877543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.86 E-value=9.9e-06 Score=86.58 Aligned_cols=248 Identities=16% Similarity=0.127 Sum_probs=135.6
Q ss_pred cCCChhH-HHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 102 RNGNAHY-AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
|+-+.++ ........++|.|++.+|......+ ....+..++.+++.........+.....+. .--+.+-+++.+|+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~--~GG~y~~~~~~~g~ 88 (466)
T COG0531 12 KKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS--AGGAYAYAKRALGP 88 (466)
T ss_pred CCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeeehhhhcCc
Confidence 4556666 7778888899999999999998775 112222333334444444444444333222 22455568899999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHh--hhcCCCcchhhHhHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIV--LSQLPNLNSIAGLSLI 258 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~--L~~l~~l~~l~~~S~~ 258 (526)
++|........+.. .....+.....+..+..++.... . .......+..+..++.+. +.-.+..+..+++..+
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 89 RLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPG-L----LSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcch-h----hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 87855444333322 33444444444444433322100 0 000112222222222211 2234555555555555
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccch
Q 009772 259 GAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWR 338 (526)
Q Consensus 259 ~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~ 338 (526)
..+..+...+++...++............ ...........+..++....++|.|-..+.++-+|+ |+|+|. ..|
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-ip~ 236 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFA-PFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-IPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCC-CcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-ccH
Confidence 54444433332222222222211111100 000011233468888999999999999999999999 777554 559
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009772 339 GAKVAYLFIAMCLFPVAIGGFWAYGN 364 (526)
Q Consensus 339 v~~~a~~i~~~~Y~~~gi~Gy~~fG~ 364 (526)
++..++.+++++|....+.-....++
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999999999888877776664
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.84 E-value=1.2e-05 Score=87.01 Aligned_cols=238 Identities=12% Similarity=0.150 Sum_probs=120.7
Q ss_pred ccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHH-HHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLY-TLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~-t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+-+.++-+...+++++|.+ .+|.+++..|.. +++..++.+++... ......|.....|.. .-.-..-.++++|
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~-aGG~Y~w~~~~~G 81 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE-KGGIYSWMNKSVG 81 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHcC
Confidence 356888999999999999976 569889988874 44444444444322 334455554333321 1133445788899
Q ss_pred ccchhHHHHHHHHHHHHH---hHH-------HHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHH---HhhhcC
Q 009772 180 ERLGVWLALFPTVYLSAG---TAT-------TLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC---IVLSQL 246 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g---~~v-------~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~---~~L~~l 246 (526)
+++|...... ....... ... ++.++ +.......+. ..........+++++. +-+.-.
T Consensus 82 ~~~gf~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 82 PKFAFIGTFM-WFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHF--------LGLNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred chHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhh--------hcccchHHHHHHHHHHHHHHHHHHc
Confidence 9998864322 1111010 011 11111 1110000000 0011111111111111 222336
Q ss_pred CCcchhhHhHHHHHHHHHH----HHHhhhhhhcccCCC--CCCCCCCCC-C-CCCcchHHHHHHHHHHHHHhhccccchH
Q 009772 247 PNLNSIAGLSLIGAITAVT----YSTMVWVLSVSQPRP--PNISYEPLS-S-ASPAATVFSVMNALGIIAFAFRGHNLAM 318 (526)
Q Consensus 247 ~~l~~l~~~S~~~~~~~~~----~~~ii~~~~i~~~~~--~~~~~~~~~-~-~~~~~~~~~~~~a~gii~faf~~h~~i~ 318 (526)
+.++..++++.++.+..+. ..++........+.. ++.+...+. . ........++..++....|+|.|...+.
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 6777777766554322221 111111111111111 111110000 0 0011112357777888999999999999
Q ss_pred HHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 009772 319 EIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIG 357 (526)
Q Consensus 319 ~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~ 357 (526)
..-+|+ |+|+| ++.|++..+...+.++|.+..+.
T Consensus 232 ~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 232 GLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 78855 45699999999999999876443
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.80 E-value=2.2e-06 Score=88.17 Aligned_cols=352 Identities=12% Similarity=0.094 Sum_probs=192.4
Q ss_pred cCCChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
|..+.++--+.-+...||+|. |+--.+.+..|=- -++.-++.+++.+.=++.|.+....+|. ..++.+.+++.+|+
T Consensus 13 rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~--~gSF~~~a~~~lG~ 89 (462)
T COG1113 13 RGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPV--SGSFSDYARKYLGP 89 (462)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHhcc
Confidence 556777778888999999998 5677788888853 2344455677777777777777554444 44999999999999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHH--HhhhcCCCcchhhH-hHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC--IVLSQLPNLNSIAG-LSL 257 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~--~~L~~l~~l~~l~~-~S~ 257 (526)
+.|....+.- ...-.-.+.+=+.-++..++..++. ..++.|.+++.++. +-|.-.|.+.++.+ +++
T Consensus 90 ~Agf~tgW~Y-W~~wv~v~~ae~tAi~~y~~~WfP~----------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 90 WAGFLTGWTY-WFFWVLVGIAELTAIGIYLQFWFPD----------VPQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665532 2222444455555555555433222 21233333332222 22445666666654 333
Q ss_pred HHHHHHHHHHHhhh--hhhcccCCCCCCCCCC-C-CCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 009772 258 IGAITAVTYSTMVW--VLSVSQPRPPNISYEP-L-SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (526)
Q Consensus 258 ~~~~~~~~~~~ii~--~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~ 333 (526)
+=+..++.+.++.+ ......+..+....+. + +.+..+..+.+++.++-+.+|||.|...+=---.|- |+|++
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k 234 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEK 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhh
Confidence 33333322222111 1111111111111111 1 223356778899999999999999998888888888 77865
Q ss_pred cccchhhHHHH-----HHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccch
Q 009772 334 VPMWRGAKVAY-----LFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSM 408 (526)
Q Consensus 334 ~~m~~v~~~a~-----~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~ 408 (526)
. +.|+..--. .-+..+.+++.+.-+-.++++.+ +....+... +. .+...+.|+.+..+.+.+.=--++
T Consensus 235 ~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S--PFV~~f~~i---Gi-~~Aa~i~N~VVLtAa~S~~NSgly 307 (462)
T COG1113 235 A-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS--PFVTVFSLI---GI-PFAAGIMNFVVLTAALSALNSGLY 307 (462)
T ss_pred H-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC--cHHHHHHHc---CC-cccccceeEEEeechhhccccccc
Confidence 3 345544333 33333444555555555556544 455555211 11 122233444444444444433333
Q ss_pred hHHHHHHhhhcccc-c-------cccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh---chhhhHhhHHHHH
Q 009772 409 PVFDSFEASYTSRT-N-------RPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL---PVTFAYPCFMWVL 477 (526)
Q Consensus 409 p~~~~le~~~~~~~-~-------~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~---~l~filP~l~~lk 477 (526)
..-+.+..+-.+++ + ++.-.+.-.+...+...++.++-...| +.++.++=+.++ ...+.+=.+.|+|
T Consensus 308 stsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~ 385 (462)
T COG1113 308 STSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLK 385 (462)
T ss_pred ccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344443321111 0 111123334555666677777778888 555555544433 5566666788888
Q ss_pred hhC
Q 009772 478 IKK 480 (526)
Q Consensus 478 ~~~ 480 (526)
.||
T Consensus 386 ~rk 388 (462)
T COG1113 386 LRK 388 (462)
T ss_pred HHh
Confidence 877
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.77 E-value=3e-05 Score=83.58 Aligned_cols=251 Identities=10% Similarity=-0.027 Sum_probs=117.7
Q ss_pred cCCChhHHHHHHHhhhhh--hhhc-hhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 102 RNGNAHYAAFHNLNAGVG--FQAL-LLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG--~GiL-~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
|+-+.++.+..-+. .+| .|+. .++.+.++.|-...+...++.+++.......+.|...+.|. .-....-+++++
T Consensus 12 r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~--~Gg~y~~~~~~~ 88 (482)
T TIGR00907 12 REFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT--SGGQYFWSAKLA 88 (482)
T ss_pred cccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHhc
Confidence 44555655444444 444 5553 34556777776544556667777777777777777555543 225555677888
Q ss_pred cccchhHHHHHH---HHHHHHHhHHHHHHhhhhhHHHHHHHHhCC-CCCCCCCCcchhhHHHHHHHHh--hhcCCCcchh
Q 009772 179 GERLGVWLALFP---TVYLSAGTATTLILLGGETMKMFFQIVCGP-LCSSNPLTTVEWYLVFTSLCIV--LSQLPNLNSI 252 (526)
Q Consensus 179 G~~~g~~~~~~~---i~~~~~g~~v~yii~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ii~~~v~~~--L~~l~~l~~l 252 (526)
|+++|+....+. ........+.+.....++.+..++....++ .. ..+......+...+.+. +.-+...|.+
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREY---IPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 876666543322 111122333333333444444333221111 01 01112222222111111 1122233334
Q ss_pred hHhHHHHHHHHHHHHHhhhhhhcccCC----CCCCCCCCCCCCC--CcchHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 009772 253 AGLSLIGAITAVTYSTMVWVLSVSQPR----PPNISYEPLSSAS--PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326 (526)
Q Consensus 253 ~~~S~~~~~~~~~~~~ii~~~~i~~~~----~~~~~~~~~~~~~--~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~ 326 (526)
+.+..+..+..+...+++.+..+..+. ..+..++...... .......+..++-...|+|.|-..+..+-+|+
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~-- 243 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI-- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc--
Confidence 444333222222111111111111111 1111111111000 01112345666666789999999999999999
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 009772 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (526)
Q Consensus 327 ~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG 363 (526)
|+|+| ++.|++..+..+..++|++..+.-+...+
T Consensus 244 --knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 244 --ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred --CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88855 45689888887776655444433333333
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.69 E-value=0.0003 Score=75.67 Aligned_cols=253 Identities=12% Similarity=0.031 Sum_probs=125.2
Q ss_pred cCCChhHHHHHHHhhh-hhhhhchhHHHH-HHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 102 RNGNAHYAAFHNLNAG-VGFQALLLPVAF-AFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~-iG~GiL~LP~af-~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
|+-+.++.+..-.+.+ +|+|+.+++..- .+.|- ..+...++.++.+......+.|...+.|. .-....-+++++|
T Consensus 13 R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~--aGG~Y~~~~~~~g 89 (475)
T TIGR03428 13 RKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPI--SGAIYQWSRRMGG 89 (475)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHcC
Confidence 5567777766666653 888988866544 45554 34555555666666666666666554443 1244455778899
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH--hCCCCCCCCCCc--chhhHHHHHHH-HhhhcCCCcchhhH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIV--CGPLCSSNPLTT--VEWYLVFTSLC-IVLSQLPNLNSIAG 254 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~--~~~~~~~~~~~~--~~~~ii~~~v~-~~L~~l~~l~~l~~ 254 (526)
+.+|.+......+....+ +.+........+..+.... ...+-....... ..+.+...++. .-+.-.+..|..++
T Consensus 90 ~~~gf~~gW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 90 EVIGWFAGWFMIIAQIVT-AAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred ccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 988887766544433222 2222222223332221110 010000000001 11222111111 11112334455555
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccCCC-CCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 009772 255 LSLIGAITAVTYSTMVWVLSVSQPRP-PNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (526)
Q Consensus 255 ~S~~~~~~~~~~~~ii~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~ 333 (526)
+..+..+..+...+++++........ +...++.............+..+.-...|+|.|-..+..+-+|+ |+|+|
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP~r 244 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KNPRR 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cCcch
Confidence 55444433222222221222211111 11111100000111123455666677789999999999999999 88865
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 009772 334 VPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (526)
Q Consensus 334 ~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG 363 (526)
...|++..+..+.+++|.++-+......+
T Consensus 245 -~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 245 -VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45699999998887777665555444444
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.64 E-value=6.3e-05 Score=80.89 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=42.2
Q ss_pred HHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 009772 306 IIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (526)
Q Consensus 306 ii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG 363 (526)
.+.|+|.|-..+...-+|+ |+|+| ++.|++..+..++.++|+...+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999 78865 45699999999999999876655444433
No 49
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.52 E-value=1e-06 Score=80.28 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=121.2
Q ss_pred hHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchh---------h-------cC-------
Q 009772 107 HYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHE---------A-------VP------- 163 (526)
Q Consensus 107 ~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~---------~-------~~------- 163 (526)
.-...-+.|-++|+|.|+||.||+..||.+++.++.+.+++++.+.-..+++.. + +.
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 334556788999999999999999999999999999999999999877776510 0 00
Q ss_pred --------C-----cc------------------ccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 009772 164 --------G-----KR------------------YNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212 (526)
Q Consensus 164 --------g-----~r------------------~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~ 212 (526)
| +| .....|++...|.| .|.-+..+++++..||-...|--.+--.+.+
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~ 173 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMN 173 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhh
Confidence 0 00 01256778888877 5776667777777799998887766555554
Q ss_pred HHHHHh-CC-------CCCCC------C-CC----cchhhHHHHHHH-HhhhcCCCcchhhHhHHHHHHHHHHHHHhhhh
Q 009772 213 FFQIVC-GP-------LCSSN------P-LT----TVEWYLVFTSLC-IVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272 (526)
Q Consensus 213 ~~~~~~-~~-------~~~~~------~-~~----~~~~~ii~~~v~-~~L~~l~~l~~l~~~S~~~~~~~~~~~~ii~~ 272 (526)
+.-... .+ +|++. + ++ .+.+..+|.+++ +|+. .-++.+-+++-++..++--.-....+.
T Consensus 174 itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft-f~diqktk~iqiltslmrw~~~~~g~~ 252 (319)
T KOG3832|consen 174 ITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT-FADIQKTKHIQILTSLMRWAAFILGIS 252 (319)
T ss_pred hhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee-EeccccchhHHHHHHHHHHHhccchhh
Confidence 432221 12 23211 0 11 123334444433 3444 223333344433333222211111111
Q ss_pred hhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhC
Q 009772 273 LSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATM 324 (526)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m 324 (526)
..-.+. .++.. ...++....-++-.-+|...|+|.+|...|.....+
T Consensus 253 l~tmqa-eedaa----~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 253 LATMQA-EEDAA----AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhh-ccccc----ccCCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 111111 11111 112222334455666888999999999999888877
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.48 E-value=0.00021 Score=77.40 Aligned_cols=50 Identities=6% Similarity=-0.074 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 009772 301 MNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVA 355 (526)
Q Consensus 301 ~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~g 355 (526)
...+-.+.|+|.|-..+...-+|+ |+|+| .+.|++..+..++.++|.+..
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 344445689999999999999999 88865 455999999888888887543
No 51
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.44 E-value=0.00016 Score=76.26 Aligned_cols=354 Identities=12% Similarity=0.101 Sum_probs=198.2
Q ss_pred ccCCChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+...+.-.+.-+...||+|. ++.-.+.+++|=...++..++++.+.+..+.-|.+.+...|- ..+|...+.+..+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~--sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV--SGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCchhhhhhhhcC
Confidence 4567777788888999999998 469999999999888888899999999999999998765552 3468888998888
Q ss_pred ccchhHHHHHHHHHHHHHhHHH-HHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhh--hcCCCcchhhH-h
Q 009772 180 ERLGVWLALFPTVYLSAGTATT-LILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVL--SQLPNLNSIAG-L 255 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~-yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L--~~l~~l~~l~~-~ 255 (526)
+.+|..+... ..+. ....++ =++..+..+ +.+..+ ......|..++.++++.+ .-.|.+.+-.+ +
T Consensus 121 pa~GFa~gWn-Yw~~-w~v~~~~El~aa~~vi----~yW~p~-----~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~ 189 (541)
T COG0833 121 PAFGFALGWN-YWLN-WAVTLPLELTAASLVI----QYWFPD-----TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189 (541)
T ss_pred chHHHHHHHH-HHHH-HHHHhhHHHHHHHHhh----hhhcCC-----CCChHHHHHHHHHHHHHHHHhcccccceehHHH
Confidence 8777654332 2211 222222 222222222 233221 235678888877766553 34677766554 3
Q ss_pred HHHHHHHHHHHHHhhhh--hhcccCCC-CCCCCCCCC-CCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 009772 256 SLIGAITAVTYSTMVWV--LSVSQPRP-PNISYEPLS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331 (526)
Q Consensus 256 S~~~~~~~~~~~~ii~~--~~i~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p 331 (526)
|.+=+++++.+.++.++ .+...++. -+.+| ++ +......+.++...+-+..|||.|...+----.|- ++|
T Consensus 190 s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~y--w~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP 263 (541)
T COG0833 190 SSIKVLTIIGFIILGIIIICGGGPTHGYIGFNY--WHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENP 263 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcceee--ecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCc
Confidence 44444444433332211 11111110 01111 12 23344557788889999999999998876666777 777
Q ss_pred CccccchhhHHHHHHHHHHHHHHH-HHHH-HhcCCC---------CCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 009772 332 AHVPMWRGAKVAYLFIAMCLFPVA-IGGF-WAYGNL---------MPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCL 400 (526)
Q Consensus 332 ~~~~m~~v~~~a~~i~~~~Y~~~g-i~Gy-~~fG~~---------~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l 400 (526)
+| .+.|+++-.+.=+.++|+..- +.|. .-|.|. +...+....++. ++ -..+..+.|..+..+++
T Consensus 264 ~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~-~G---i~~~~~imNaVIL~svl 338 (541)
T COG0833 264 RK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKN-AG---IPVAASIMNAVILTSVL 338 (541)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHh-cC---CccchHHHHHHHHHHHH
Confidence 54 456888888877777775432 2232 234331 110133333311 01 11233455666666666
Q ss_pred hhhhccchhHHHHHHhhhcccc--------ccccccchhhhhHHHHHHHHHHHHHhcc--chHHHHHHhhhhhhchhhhH
Q 009772 401 SSFQIYSMPVFDSFEASYTSRT--------NRPCSIWVRSGFRVFYGFVSFFIGVALP--FLSSLAGLLGGLTLPVTFAY 470 (526)
Q Consensus 401 ~sypl~~~p~~~~le~~~~~~~--------~~~~~~~~r~~~r~~~~~~~~~iA~~vP--~~~~vi~lvGa~~~~l~fil 470 (526)
.+-=-.++..-+.+..+-.+++ +++-..+.-.++..++.+++++-+..-. -++-++++.|-.+ .++.+-
T Consensus 339 Sa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~-~i~W~~ 417 (541)
T COG0833 339 SAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG-FIAWGS 417 (541)
T ss_pred HHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-HHHHHH
Confidence 5554445555555555433221 1111122233444444455554444421 2556666666432 445555
Q ss_pred hhHHHHHhh
Q 009772 471 PCFMWVLIK 479 (526)
Q Consensus 471 P~l~~lk~~ 479 (526)
=++.|++-|
T Consensus 418 I~~shirFR 426 (541)
T COG0833 418 ICLSHIRFR 426 (541)
T ss_pred HHHHHHHHH
Confidence 566666654
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.33 E-value=5.9e-06 Score=88.92 Aligned_cols=237 Identities=16% Similarity=0.149 Sum_probs=131.4
Q ss_pred Hhhhhhhhhch-hHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhHHHHHHHH
Q 009772 114 LNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTV 192 (526)
Q Consensus 114 ~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~~~~~~i~ 192 (526)
+..++|+|++. .+.+..+.|.....+..++.+++...++.-+.+...+.+. .-.+.+.+++.+|+..|........+
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~--~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS--AGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc--ccchhhhhhhccCCcCCceeeHHHHH
Confidence 45678888754 7778889998666777788888888888888887665442 34677788899999988876655322
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchh----hHHHHHHHHhhhcCCCcchhhHhHHHHHHHHHHHHH
Q 009772 193 YLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEW----YLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYST 268 (526)
Q Consensus 193 ~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~~~~~~~ 268 (526)
.. .-.........+..++.. +. ..+ ......| ..++.+++..+. +...+..+.+...-....+...+
T Consensus 85 ~~-~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~li 155 (478)
T PF00324_consen 85 SY-IAAIAAEATAAGSFLQFW-GY-FPG-----LPSTWVWGILIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIALI 155 (478)
T ss_pred HH-HHHHHhhhhhhhhhhccc-cc-ccc-----ccccccccchhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHhh
Confidence 22 222222223333333221 10 111 1112222 333333332222 22333333322221111111111
Q ss_pred hhhhhh----cccCCCCCCC-CC-C------CCC---CCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 009772 269 MVWVLS----VSQPRPPNIS-YE-P------LSS---ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (526)
Q Consensus 269 ii~~~~----i~~~~~~~~~-~~-~------~~~---~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~ 333 (526)
..++.+ ...+.+.+.+ ++ + .++ +....++.++..++....++|.|-..+...-+|. |+|+|
T Consensus 156 ~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k 231 (478)
T PF00324_consen 156 AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK 231 (478)
T ss_pred hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh
Confidence 111111 1111111110 00 0 000 1112346789999999999999999999999999 88855
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009772 334 VPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLM 366 (526)
Q Consensus 334 ~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~ 366 (526)
++.|++..++....++|.......-...+.+.
T Consensus 232 -~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 232 -TIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred -hhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 56799999999999999887766555555433
No 53
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.33 E-value=0.0016 Score=69.28 Aligned_cols=244 Identities=15% Similarity=0.123 Sum_probs=125.6
Q ss_pred hhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhH
Q 009772 106 AHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVW 185 (526)
Q Consensus 106 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~ 185 (526)
|+.+.+|+.+-.+|+....+- +++..+++..++..++...-+.+......+ . ..++.-+.|..||.+ |..
T Consensus 23 W~~~~~~v~~~~~Ga~l~~~G-----Ls~~~ailai~lG~~i~~~~~~l~~~~G~r-~---Gl~~~v~sR~~FG~~-Gs~ 92 (442)
T TIGR00800 23 WLGAAFNIATWAIGALGLPLG-----LSWWQSVIAIILGNLLGGIFVALNSRAGAK-Y---GLPFPVLSRASFGIY-GSL 92 (442)
T ss_pred HHHHhhhHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHHHHhhhhHHH-h---CCCcchhhhhhhhhh-HhH
Confidence 455566666666665443211 233334444333333322222222222221 1 347888999999996 555
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCC-CCCCC--cchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHH
Q 009772 186 LALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCS-SNPLT--TVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAIT 262 (526)
Q Consensus 186 ~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~-~~~~~--~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~ 262 (526)
+..+.......|-...-....++.+..++....++.-+ ..+++ ...+.+++.++.+++......+-+......+...
T Consensus 93 ~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~~~ 172 (442)
T TIGR00800 93 LPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAVVP 172 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 55666666667777777778888888888776542100 00011 1222344445555544455555544455554433
Q ss_pred HHHHHHhh-hhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HhhccccchHHHHhhCCCCCCCCCccccchhh
Q 009772 263 AVTYSTMV-WVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIA-FAFRGHNLAMEIQATMPSTFKHPAHVPMWRGA 340 (526)
Q Consensus 263 ~~~~~~ii-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~-faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~ 340 (526)
.+....+. +...-..+.. +.... ............+..++...+ +.-..-.+.+...+.+ |++++.. +..
T Consensus 173 ~~~~~~~~~~~~~~~~g~~-~~~~~-~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~--~~~ 244 (442)
T TIGR00800 173 PFAAFGMLIWALSKAHGKG-PLGEL-TGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI--WGQ 244 (442)
T ss_pred HHHHHHHHHHHHHHcCCCC-ccccC-CCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH--HHH
Confidence 22222211 1111111111 11101 000112344566776666533 3334455788999999 5544443 557
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCCC
Q 009772 341 KVAYLFIAMCLFPVAIGGFWA----YGNLMP 367 (526)
Q Consensus 341 ~~a~~i~~~~Y~~~gi~Gy~~----fG~~~~ 367 (526)
.+++.........+|+.+-.. +|+...
T Consensus 245 ~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 245 FLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 777777777788888777665 887644
No 54
>PRK11375 allantoin permease; Provisional
Probab=98.28 E-value=0.0032 Score=67.69 Aligned_cols=280 Identities=11% Similarity=0.073 Sum_probs=130.6
Q ss_pred ccCHHHHHHHHhcccchhHHHHHHH-HHHHHHhHHHHHHhhhhhHHHHHHHHhCCCC--CC----CCCCcchhh--HHHH
Q 009772 167 YNRYVELAQAAFGERLGVWLALFPT-VYLSAGTATTLILLGGETMKMFFQIVCGPLC--SS----NPLTTVEWY--LVFT 237 (526)
Q Consensus 167 ~~sY~~l~~~~~G~~~g~~~~~~~i-~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~--~~----~~~~~~~~~--ii~~ 237 (526)
..++.-++|..||.+..++. .+.. ....+|=-..-..+.++.+..++..+.++.. ++ .......++ +++.
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~-~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFP-GLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred CCChhHhHHHHHccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 35899999999999744544 3333 2222333333334567777766655432100 00 011111222 2344
Q ss_pred HHHHhhhcCCCcchhhHhHHHHHHHHHHHHHhhhhhhccc-CCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhc-ccc
Q 009772 238 SLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQ-PRPPNISYEPLSSASPAATVFSVMNALGIIAFAFR-GHN 315 (526)
Q Consensus 238 ~v~~~L~~l~~l~~l~~~S~~~~~~~~~~~~ii~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~-~h~ 315 (526)
++.+++. ....+.++++..++....+..++...+..+.+ +..+-.++.+..........+.+..++...+=++. .-.
T Consensus 167 ~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 167 LVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 4444554 56667777777766554433222222222222 21111111110001112234455555544333444 344
Q ss_pred chHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHH----HHhcCCCCCChhHhHhhhhccCCCCchHHHHHH
Q 009772 316 LAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGG----FWAYGNLMPSGGMLRALFQFHSHDISRGLLAVT 391 (526)
Q Consensus 316 ~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~G----y~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~ 391 (526)
+.+..-+.. |++++.. +...+++.+...+...+|+.. ...||+... |..+-+... + +.....++
T Consensus 246 ~~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~--dp~~i~~~~---~-~~~~~~~a 313 (484)
T PRK11375 246 SASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTW--NVLDIVQRW---D-SLFASFFA 313 (484)
T ss_pred cccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--CHHHHHHHh---c-chHHHHHH
Confidence 677888877 5554332 444455555555554444433 456776554 343333110 1 22333344
Q ss_pred HHHHHHHHHhhh-hccchhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHh--ccc---hHHHHHHhhhhhhc
Q 009772 392 FLLVVFNCLSSF-QIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVA--LPF---LSSLAGLLGGLTLP 465 (526)
Q Consensus 392 ~~~~~i~~l~sy-pl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~--vP~---~~~vi~lvGa~~~~ 465 (526)
.+.++++.+++- ....++.-..+...+.++-+ .+|... +..++..+++.. +.+ |..++++.|++.++
T Consensus 314 ~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~-----~~~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~P 386 (484)
T PRK11375 314 VLVILMTTISTNATGNIIPAGYQIAALAPTKLT-----YKNGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGP 386 (484)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHhCcCccc-----hhhHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHH
Confidence 555666666663 35677777777776653211 122211 111222232222 223 77788888877664
Q ss_pred hh
Q 009772 466 VT 467 (526)
Q Consensus 466 l~ 467 (526)
+.
T Consensus 387 i~ 388 (484)
T PRK11375 387 VI 388 (484)
T ss_pred HH
Confidence 43
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.18 E-value=0.00086 Score=66.40 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=86.5
Q ss_pred hHHHHHHHhhhhhhhhch---hHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccch
Q 009772 107 HYAAFHNLNAGVGFQALL---LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (526)
Q Consensus 107 ~~a~~~l~~~~iG~GiL~---LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g 183 (526)
.+-.|-.+.+++|+|.-+ +=.=|..-|+ .|+...++.+++-..++..+.+...+.. ..+|+|.-+..+|++++
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~---a~~y~~~~~~v~~~~~~ 81 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFN---ATSYREILKYVSGPKFA 81 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHhhHHHH
Confidence 344566777999999765 2233445566 3666667777777778877777755432 45999999999999999
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhh--HHHHHHHHhhhcCCCcchhhHh
Q 009772 184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWY--LVFTSLCIVLSQLPNLNSIAGL 255 (526)
Q Consensus 184 ~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--ii~~~v~~~L~~l~~l~~l~~~ 255 (526)
|+.+...++.+ ++.++.-+--.|..+++.+. -..|. ++...++..+-++++.+.+-.+
T Consensus 82 ki~d~~iif~l-f~~~vVM~AGags~~~e~~~-------------lP~wiGali~i~~v~i~lfl~~vegi~tv 141 (349)
T COG3949 82 KIIDIIIIFFL-FSTAVVMLAGAGSLLEEMFG-------------LPYWIGALIIILLVLILLFLGRVEGIITV 141 (349)
T ss_pred HHHHHHHHHHH-HHHHHHHhccchhHHHHHhC-------------ccHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 99877666665 88888776666667665432 23443 3333333444456666665444
No 56
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.15 E-value=0.0066 Score=63.44 Aligned_cols=307 Identities=13% Similarity=0.127 Sum_probs=150.4
Q ss_pred hhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhH
Q 009772 106 AHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVW 185 (526)
Q Consensus 106 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~ 185 (526)
|....+++.+-..|+.... +++--+++..++..++...-.-+...... +...++.-++|..||++ |..
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~Gl~~~v~sR~~FG~~-Gs~ 74 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTGLSAMGSLKLSLGSK-GSV 74 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCcCHHHHHHHHHccc-hhh
Confidence 4556667666666654321 44444444444333333222222222221 11358999999999996 555
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHHHHHH
Q 009772 186 LALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVT 265 (526)
Q Consensus 186 ~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~~~~~ 265 (526)
+..+.....+.|--..-....++.+..+.+...+. .+...+.++++++.++.+ ....+.++++..++......
T Consensus 75 ~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~i 147 (386)
T TIGR02358 75 LPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLLI 147 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55555555556665555667788888877654332 122345555555444444 34556677777776654443
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHh-hccccchHHHHhhCCCCCCCCCccccchhhHHHH
Q 009772 266 YSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFA-FRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAY 344 (526)
Q Consensus 266 ~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~fa-f~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~ 344 (526)
..+...+....+....+ ..+ .+. + ..+..++....-. -..-...++..+.. |++++ ......++.
T Consensus 148 ~~~~~~~~~~~~~~~~~-~~~--~~~----~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G~ 213 (386)
T TIGR02358 148 ATLWLLVVVFSKADLSE-LWN--RAG----D-MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLGY 213 (386)
T ss_pred HHHHHHHHHHhccchhh-hcC--CCC----C-ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHHH
Confidence 33322222222221111 111 111 1 2233333222111 11223366777776 54433 236666777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhhcccccc
Q 009772 345 LFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNR 424 (526)
Q Consensus 345 ~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~~~~~~~ 424 (526)
.+...+...+|.....+.++.... +++... . ....+-++.+++..++-....++.--.+...+++- +
T Consensus 214 ~i~~~~~~~~G~~~~~a~~~~d~~-~~~~~~------g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~-~- 280 (386)
T TIGR02358 214 FIGSCWMYFLGLAVTLATGQTDII-SILAGA------G----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRL-K- 280 (386)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHH-HHHHhc------c----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-c-
Confidence 888888888888777777653221 333222 1 11123344455555555555556555555554221 1
Q ss_pred ccccchhhhhHHHHHHHHHHHHHh--ccchHHHHHHhhhhhh
Q 009772 425 PCSIWVRSGFRVFYGFVSFFIGVA--LPFLSSLAGLLGGLTL 464 (526)
Q Consensus 425 ~~~~~~r~~~r~~~~~~~~~iA~~--vP~~~~vi~lvGa~~~ 464 (526)
++++.++ ..++.++++.. ...+..++++.|.+..
T Consensus 281 ---~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~ 316 (386)
T TIGR02358 281 ---VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFA 316 (386)
T ss_pred ---chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122211 22222333322 3456677777666555
No 57
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.06 E-value=0.03 Score=60.38 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=81.8
Q ss_pred cccCCChhHHHHHHHhhhhhh-hhchhHHHHHHhchHHHHHHH--HHHHH-HHHHHHHHHHHchhhcCCccccCHHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSL--TIAYC-WQLYTLWILVQLHEAVPGKRYNRYVELAQ 175 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill--~~~~~-~~~~t~~lL~~~~~~~~g~r~~sY~~l~~ 175 (526)
-.|+-+++...+.+..+.+|+ ..++.|-...+.|+.+....+ ..... ...+-...+.+..++. +..|..|..+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~l~ 115 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY---NAVTLNDMLR 115 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHH
Confidence 346677787888887776665 567788777777764211111 11111 1111122222222322 2579999999
Q ss_pred HHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHh
Q 009772 176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGL 255 (526)
Q Consensus 176 ~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~ 255 (526)
+-||++..+....+......++...+-+...+..++.++ + .+....+++.+++++..+....++...+.
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~----g-------i~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT----G-------ISYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-------CCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999987656554444444334444444444455554432 2 22333344555555667788888888887
Q ss_pred HHHHHHH
Q 009772 256 SLIGAIT 262 (526)
Q Consensus 256 S~~~~~~ 262 (526)
-.+=.+.
T Consensus 185 D~iQ~~i 191 (483)
T PRK09442 185 DALQGIV 191 (483)
T ss_pred HHHHHHH
Confidence 6655443
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.03 E-value=0.024 Score=60.87 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=85.4
Q ss_pred cccCCChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHHHHH----HHHHHchhhcCCccccCHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLYTL----WILVQLHEAVPGKRYNRYVELA 174 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~~t~----~lL~~~~~~~~g~r~~sY~~l~ 174 (526)
-.|+-+++...+.+..+.+|++. ++.|-...+.|+.+....... ....+.+. ..+.+..++ .+..|.+|.-
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l 113 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRK---YNAITINDVL 113 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---cCCccHHHHH
Confidence 34677888888888888887765 567877777787432211110 01111111 112222221 2256999999
Q ss_pred HHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhH
Q 009772 175 QAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAG 254 (526)
Q Consensus 175 ~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~ 254 (526)
++-||++..+++..+.....+++...+-+...+..++.++ + .+....+++.+++++..+...-++...+
T Consensus 114 ~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~----g-------i~~~~~iii~~~iv~iYt~~GG~~av~~ 182 (471)
T TIGR02119 114 KARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT----G-------LSYLTALFIFSSSVLIYTTFGGFRAVAL 182 (471)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999976666665555544445555444444454444432 2 2233334444555666777888888888
Q ss_pred hHHHHHHHHH
Q 009772 255 LSLIGAITAV 264 (526)
Q Consensus 255 ~S~~~~~~~~ 264 (526)
...+=.+..+
T Consensus 183 td~iQ~~v~~ 192 (471)
T TIGR02119 183 TDAIQGIVMF 192 (471)
T ss_pred HHHHHHHHHH
Confidence 7766544333
No 59
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00057 Score=74.03 Aligned_cols=368 Identities=12% Similarity=0.053 Sum_probs=188.6
Q ss_pred ccCCChhHHHHHHHhhhhhhhhch-hHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
+|+.+.+.-...=+.++||+|++- ...+.++.|=..-++..+++++..+.+..-+.|..-+.|.. ..++...+.+..|
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRFVG 107 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeeeeC
Confidence 456666766666788999999965 67888888877767777777788888888888876555531 1234444677778
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHH-HHhCCCCCCCCCCcchhhHHHHHHH--HhhhcCCCcchhhHhH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ-IVCGPLCSSNPLTTVEWYLVFTSLC--IVLSQLPNLNSIAGLS 256 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ii~~~v~--~~L~~l~~l~~l~~~S 256 (526)
+-+|..+.+-..+.. +-.+-+-....+..++.+.. ...... ........|+.++.++. +.+.-++-+....+.+
T Consensus 108 e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w~~~~~~~~~--~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~ 184 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYWTGASLIGIL--VDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSL 184 (554)
T ss_pred cHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcccccccc--ccCCCCCccHHHHHHHHHHHHHHHHhhccceeehH
Confidence 877766554333322 22222223333334433320 000000 01223345554443332 2334444434444333
Q ss_pred HHHHHHH-HHHHH--hhhhhhcccCCCCCCCCCC---CCC--CCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 009772 257 LIGAITA-VTYST--MVWVLSVSQPRPPNISYEP---LSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (526)
Q Consensus 257 ~~~~~~~-~~~~~--ii~~~~i~~~~~~~~~~~~---~~~--~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~ 328 (526)
.+..+.+ +.+.+ +++..+...... ..|.. +++ ...+..+.++..++-+..|+|.|-..+-..-+|-
T Consensus 185 ~~~kvl~~v~~~Il~iVi~~G~~~~d~--~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~---- 258 (554)
T KOG1286|consen 185 AFNKILTAVGFIILAIVIIAGGGPADV--KNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA---- 258 (554)
T ss_pred HHHHHHHHHHHHHhheeeecCCCcCCc--CCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 3322222 22222 221222221111 01110 111 1122336788899999999999999998888999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHH-H-HhcCCC-CCChhH-hHhhhhccCCCCchHHHHHHHHHHHHHHHhhhh
Q 009772 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGG-F-WAYGNL-MPSGGM-LRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQ 404 (526)
Q Consensus 329 k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~G-y-~~fG~~-~~~g~i-l~~l~~~~~~~~~~~~~~~~~~~~~i~~l~syp 404 (526)
|+|+| ...+++..++..++++|....+.- . .-|.+. ..++.. ..-+.-..+...-.++-.+.++..++.++++--
T Consensus 259 kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 259 KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 78864 456999999999999998877543 2 223331 221010 000100000011112112566667777666666
Q ss_pred ccchhHHHHHHhhhccccc----cccccchhhhhH-HHHHHHHHHHHHhccc-----hHHHHHHhhhhhhchhhhHhhHH
Q 009772 405 IYSMPVFDSFEASYTSRTN----RPCSIWVRSGFR-VFYGFVSFFIGVALPF-----LSSLAGLLGGLTLPVTFAYPCFM 474 (526)
Q Consensus 405 l~~~p~~~~le~~~~~~~~----~~~~~~~r~~~r-~~~~~~~~~iA~~vP~-----~~~vi~lvGa~~~~l~filP~l~ 474 (526)
-.+++.-+.+..+-..+.- ...+++.+-... ....++..+.++.... ++.++++.|-- ..+++.+=++.
T Consensus 338 ~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~-tl~~w~~i~~~ 416 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG-TLFAWTLVALS 416 (554)
T ss_pred HHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 6666766666555322110 011111222222 2233344444444332 57788877642 25566666666
Q ss_pred HHHhhC
Q 009772 475 WVLIKK 480 (526)
Q Consensus 475 ~lk~~~ 480 (526)
|++.|+
T Consensus 417 ~i~~R~ 422 (554)
T KOG1286|consen 417 HLRFRY 422 (554)
T ss_pred Heeeee
Confidence 666653
No 60
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.64 E-value=0.1 Score=55.44 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009772 296 TVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNL 365 (526)
Q Consensus 296 ~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~ 365 (526)
.-+.+..++-.-++.+.|-..-..+-+|- |++++. ..|++..+..+..+.=..+-+.-..+-++|
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEET----KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHh----cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 45677777777788889999999999999 666554 347777777777666666655555566643
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.62 E-value=0.11 Score=54.72 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=84.7
Q ss_pred cCCChhHHHHHHHhhhhhh-hhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 102 RNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
|+-+++...+.+..+.+|+ ..++.|...-+.|+.. ........+......++..+..++ .+ ..|..|..+.-||+
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN-NG--AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-cC--CCchhHHHHHHhCc
Confidence 5666777777777766665 4577888777778642 211111122222233334333332 22 67999999999999
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~ 260 (526)
+..+.+..+..+...+....+-+...+..++.++. .+...-.++.+++++..+..--++...+.-.+=.
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-----------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~ 147 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-----------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQA 147 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 66776655544444455566655555666554432 2223333444455556677788888887766654
Q ss_pred HHH
Q 009772 261 ITA 263 (526)
Q Consensus 261 ~~~ 263 (526)
+..
T Consensus 148 ~i~ 150 (407)
T TIGR00813 148 VIM 150 (407)
T ss_pred HHH
Confidence 443
No 62
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.11 Score=54.46 Aligned_cols=55 Identities=16% Similarity=-0.044 Sum_probs=42.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCC
Q 009772 427 SIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKP 481 (526)
Q Consensus 427 ~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~ 481 (526)
.+.+|...|.+..+.+.++.+.+.+.+.++.+.+.+.+ .+-+...+++.+-.+|+
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 45678888888887777776666699999999999888 77777777777666554
No 63
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.49 E-value=0.17 Score=52.44 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=70.9
Q ss_pred ccchHHHHh-hCCCCCCCCCccccchhhHHHH---HHHHHHHHHHHHHHHHhc---CCCCCChhHhHhhhhccCCCCchH
Q 009772 314 HNLAMEIQA-TMPSTFKHPAHVPMWRGAKVAY---LFIAMCLFPVAIGGFWAY---GNLMPSGGMLRALFQFHSHDISRG 386 (526)
Q Consensus 314 h~~i~~I~~-~m~~~~k~p~~~~m~~v~~~a~---~i~~~~Y~~~gi~Gy~~f---G~~~~~g~il~~l~~~~~~~~~~~ 386 (526)
-..+-.+.+ ++ |+|++. +++....+. .....+|.-.+..|...- .+..+.+.++.+..+..- .+.
T Consensus 197 ~iiv~~i~~~g~----~~~~~~-~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~---G~~ 268 (378)
T TIGR00796 197 IIVVNAIRSRGV----TKPKKI-TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLF---GSL 268 (378)
T ss_pred HHHHHHHHHhCC----CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHc---chh
Confidence 344455555 77 555443 334554444 444566666666665442 222122356655522110 111
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-c
Q 009772 387 LLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-P 465 (526)
Q Consensus 387 ~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~ 465 (526)
-..+..+.+.++++++---....+.+.+++...+ - ....+-....+.+++++.. .++.++++ +. .
T Consensus 269 G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k---~-----~y~~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~Pv 334 (378)
T TIGR00796 269 GSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK---L-----SYKTWVIVFTLFSFIVANL--GLTQIISI----SIPV 334 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C-----CHHHHHHHHHHHHHHHHHh--CHHHHHHH----HHHH
Confidence 1233455666666766665555666666665431 1 1111222233444444443 56777774 56 7
Q ss_pred hhhhHhhHHHHH
Q 009772 466 VTFAYPCFMWVL 477 (526)
Q Consensus 466 l~filP~l~~lk 477 (526)
+.+++|..+-+.
T Consensus 335 L~~~YP~~i~li 346 (378)
T TIGR00796 335 LMIIYPLAIVLI 346 (378)
T ss_pred HHHHHHHHHHHH
Confidence 788888764433
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.45 E-value=0.25 Score=53.40 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=88.5
Q ss_pred ccCCChhHHHHHHHhhhhh-hhhchhHHHHHHhchHHHHHHHH---HHHHHHHHHHHHHHHchhhcCCccccCHHHHHHH
Q 009772 101 SRNGNAHYAAFHNLNAGVG-FQALLLPVAFAFLGWSWGILSLT---IAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQA 176 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~---~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~ 176 (526)
.|+-+.+-..+...-+.++ .-.+++|-..-..|+....+... ...+.-.+-...+.+..+ . .+..|..|.-++
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~-~--~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK-A--RGATTIPDFLEA 113 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--cCCccHHHHHHH
Confidence 3454555666666666666 88899999999999864333333 233333444444444443 2 236799999999
Q ss_pred HhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhH
Q 009772 177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLS 256 (526)
Q Consensus 177 ~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S 256 (526)
-||+++.|.+..+......++.+..-++-.+..++..+. .+...-.++.+.+++.-+.+--+++..|..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-----------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td 182 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-----------ISYVTGILIGALIVALYTFLGGLRAVVWTD 182 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----------CCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 999556777766666666677777766666666643322 112222233344445556677777777776
Q ss_pred HHH
Q 009772 257 LIG 259 (526)
Q Consensus 257 ~~~ 259 (526)
.+=
T Consensus 183 ~iq 185 (493)
T COG0591 183 FIQ 185 (493)
T ss_pred HHH
Confidence 554
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.30 E-value=0.044 Score=57.65 Aligned_cols=147 Identities=13% Similarity=0.033 Sum_probs=73.6
Q ss_pred cCCChhHHHHHHHhhhhhhh-hchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 102 RNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
|+-+++...+.+..+.+|++ .++.|-...+.|+... ...+...+......+.+.+-.+ + .+..|..|.-++-||+
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~~~~r-~--~~~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGL-WYAIGYAIGFLLFALFFAPRLR-R--SGAVTIPEYLEKRYGS 81 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGG-HHHHHHHHHHHHHHHHTHHHHH-H--TT--SHHHHHHHHT-H
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccee-eeccccchhHHHHHHHHHHhhc-c--cchhhhhhhhhhhcCC
Confidence 56778888888888877764 5778888888887532 2222222222222233332222 1 2367999999999999
Q ss_pred cc-hhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHH
Q 009772 181 RL-GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (526)
Q Consensus 181 ~~-g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~ 259 (526)
+. .+.+..+..+...+......+...+..++.+ .+ .+.....++..++++..+..--++...+...+=
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~----~g-------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ 150 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVL----FG-------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQ 150 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----TT---------HHHHHHHHHHHHHHTTCTT------SHHHHH
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhc----cc-------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 75 3544443333333444444444445444433 22 223444455555666677888888888776665
Q ss_pred HHHH
Q 009772 260 AITA 263 (526)
Q Consensus 260 ~~~~ 263 (526)
.+..
T Consensus 151 ~~i~ 154 (406)
T PF00474_consen 151 GVIM 154 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 66
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.3 Score=51.39 Aligned_cols=256 Identities=14% Similarity=0.100 Sum_probs=126.9
Q ss_pred CHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCC
Q 009772 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN 248 (526)
Q Consensus 169 sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~ 248 (526)
+=..++|..||.+ |.++..+.....+.|-...-.+..++..- .. ...+...|+++.++++...+ +=-
T Consensus 82 pqmi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~---~~--------~~~~~~~~ili~g~l~~l~~-ifG 148 (442)
T COG1457 82 PQMILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIG---SG--------TGLPVWAGILIIGVLMTLVT-IFG 148 (442)
T ss_pred Chheeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhccccc---cC--------CCCcHHHHHHHHHHHHHHHH-HHh
Confidence 3345688889996 66666777777777877776666666511 11 12334556666665554433 223
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhcc-cCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhh-ccccchHHHHhhCCC
Q 009772 249 LNSIAGLSLIGAITAVTYSTMVWVLSVS-QPRPPNISYEPLSSASPAATVFSVMNALGIIAFAF-RGHNLAMEIQATMPS 326 (526)
Q Consensus 249 l~~l~~~S~~~~~~~~~~~~ii~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf-~~h~~i~~I~~~m~~ 326 (526)
.+.+..++..+....+..+...+..... ++. .+.. ....+.++.++..++...+=.+ ..-.......+-+
T Consensus 149 ~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~---~~~~---~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~-- 220 (442)
T COG1457 149 YRALHKLERIAVPLLLLLFLYLLALLFRSKGG---LDAL---WVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA-- 220 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccee---eccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc--
Confidence 3444444444443333222222222222 211 1111 0111344556666655443333 3344567777778
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 009772 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLM-PSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQI 405 (526)
Q Consensus 327 ~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~-~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl 405 (526)
|+|+.++.-.....+......+-+++|...-.+=|+.. .. ++...+ .. ....+.+..+++..++--.
T Consensus 221 --~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~-~~~~~~------G~---~g~~~~lil~l~~~ttN~~ 288 (442)
T COG1457 221 --PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIA-DVMLGL------GG---FGLPAILILVLGTVTTNAN 288 (442)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHhc------cc---HHHHHHHHHHHHHHhcCcH
Confidence 33332111123344555556666777777777888766 32 444444 11 2334445555555555555
Q ss_pred cchhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHh----ccchHHHHHHhhhhhh
Q 009772 406 YSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVA----LPFLSSLAGLLGGLTL 464 (526)
Q Consensus 406 ~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~----vP~~~~vi~lvGa~~~ 464 (526)
.+++..-.+.....+ .++..+.+..... +.+++|+. +.++..++.++|....
T Consensus 289 nlYsa~ls~~~i~~~-----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~ 344 (442)
T COG1457 289 NLYSAGLSFANIIPK-----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIP 344 (442)
T ss_pred HHHHHHHHHHHhhhh-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444322 2223333333221 44444444 4456667777666544
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=96.99 E-value=0.63 Score=48.95 Aligned_cols=172 Identities=17% Similarity=0.152 Sum_probs=78.2
Q ss_pred ccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcC
Q 009772 167 YNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246 (526)
Q Consensus 167 ~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l 246 (526)
..++.-++|..||.+ |..+..+.......|-...-..+.++.++.+ .+ .+...+.+++.++..+.+..
T Consensus 70 G~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~----~~-------~~~~~~~~i~~~l~~~~~~~ 137 (404)
T PRK11017 70 GLSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA----TG-------LDINLLIVLSGLLMTVTAYF 137 (404)
T ss_pred CcCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hC-------CCHHHHHHHHHHHHHHHHHH
Confidence 358999999999996 5544444444443333333223344444332 11 11233555556655554432
Q ss_pred CCcchhhHhHHHHHHHHHHHHHhhhhhhcccCC-CCCC-CCCCCCCCCCcchHHHHHHHHHHHHHh-hccccchHHHHhh
Q 009772 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPR-PPNI-SYEPLSSASPAATVFSVMNALGIIAFA-FRGHNLAMEIQAT 323 (526)
Q Consensus 247 ~~l~~l~~~S~~~~~~~~~~~~ii~~~~i~~~~-~~~~-~~~~~~~~~~~~~~~~~~~a~gii~fa-f~~h~~i~~I~~~ 323 (526)
. .+.++++..++........+...+..+.+.. ..+. +.. . .....+..++...+=. -..-.+.++.-+.
T Consensus 138 G-~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~---~----~~~~~~~~a~~~~~g~~~~~~~~~~DysRy 209 (404)
T PRK11017 138 G-ISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIV---P----AEPLDFSAALTLVVGSFISGGTLTADFVRF 209 (404)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCC---C----CCcccHHHHHHHHHHHHHHhHhcCCChHhh
Confidence 2 3444444444433222222111111222111 1111 111 0 1112444444443222 2334566777777
Q ss_pred CCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009772 324 MPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGN 364 (526)
Q Consensus 324 m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~ 364 (526)
. |++++.- .....++.+...+...+|...-.++|+
T Consensus 210 ~----k~~~~~~--~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 210 G----RSAKIAV--LATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred c----cCcccee--ehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7 4443221 344555556666666667666666665
No 68
>PRK12488 acetate permease; Provisional
Probab=96.90 E-value=0.95 Score=49.66 Aligned_cols=149 Identities=9% Similarity=0.104 Sum_probs=82.2
Q ss_pred cccCCChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHHHH-HHHHHHchhhcCCccccCHHHHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLYT-LWILVQLHEAVPGKRYNRYVELAQAA 177 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~~t-~~lL~~~~~~~~g~r~~sY~~l~~~~ 177 (526)
-.|+-+++...+.+..+.++++. ++.|-.....|+.. ... .+...+.+.- .+++.+--+ ..+ ..|..|.-++=
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~-~~g~~~g~~~~~~~~a~~lr-~~g--~~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLY-ALGVLAGWPIILFLIAERLR-NLG--KYTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHH-HHHHHHHHHHHHHHHHHHHH-HCC--CcchHHHHHHH
Confidence 34677888888888888777664 77888888888742 211 1111111111 122221112 123 46999999888
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHH
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSL 257 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~ 257 (526)
||.+.-|.+..+..+..++....+-++-.+..++.+ .+ .+...-+++.+++++..+..--++...|...
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l----~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~ 208 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL----FG-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQI 208 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-------CCHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 885555655554444433444444444444444433 22 2222234445555566677888888888777
Q ss_pred HHHHHHH
Q 009772 258 IGAITAV 264 (526)
Q Consensus 258 ~~~~~~~ 264 (526)
+=.+..+
T Consensus 209 iQ~~im~ 215 (549)
T PRK12488 209 IKAVLLL 215 (549)
T ss_pred HHHHHHH
Confidence 6544333
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.77 E-value=0.94 Score=47.65 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=54.3
Q ss_pred CCChhHHHHHHHhhhhhhh-hchhHHHHHHhchHHHHHHHHHHHHHHHHHH----HHHHHchhhcCCccccCH-----HH
Q 009772 103 NGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTL----WILVQLHEAVPGKRYNRY-----VE 172 (526)
Q Consensus 103 ~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~~~~~t~----~lL~~~~~~~~g~r~~sY-----~~ 172 (526)
+-|.+++.+..+.+.+|+| +++.|.|.+..| ..+++.+-+.+++..-+. .+..+..++ ++ ..+| ..
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~--~g~~~GGP~yy 121 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DA--DGVFRGGPMYY 121 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CC--CCCEecChHHH
Confidence 4688999999999999998 999999977776 445444444444444333 334444331 11 2236 77
Q ss_pred HHHHHhcccchhHHHHH
Q 009772 173 LAQAAFGERLGVWLALF 189 (526)
Q Consensus 173 l~~~~~G~~~g~~~~~~ 189 (526)
+-+...||+.|.++..+
T Consensus 122 i~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHhCccHHHHHHHHH
Confidence 77777778766665443
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.66 E-value=1.4 Score=48.31 Aligned_cols=145 Identities=8% Similarity=0.030 Sum_probs=78.5
Q ss_pred cccCCChhHHHHHHHhhhhhh-hhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 100 ESRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
-.|+-+++...+.+..+.+++ ..++.|-.....|+..-...+.. .+......+++..-.++ .| ..|-.|.-++=|
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~-~~~~~~~~~~~~p~~rr-~~--~~T~~e~l~~Rf 105 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGW-TGGYVLLALLLAPYLRK-FG--KYTVPDFIGDRY 105 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH-CC--CccHHHHHHHHh
Confidence 346788888888888887755 46778877777776321111111 11111122333333232 23 568888888889
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~ 258 (526)
|++..+++..+..+...+.....-+...+..++.+. + .+...-+++.+++++..+..--++...|.-.+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~----g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~i 174 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL----E-------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVA 174 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 876566655544443334444443444444444332 2 22223334455555666677788887776555
Q ss_pred H
Q 009772 259 G 259 (526)
Q Consensus 259 ~ 259 (526)
=
T Consensus 175 Q 175 (552)
T TIGR03648 175 Q 175 (552)
T ss_pred H
Confidence 4
No 71
>PRK10484 putative transporter; Provisional
Probab=96.64 E-value=1.4 Score=48.02 Aligned_cols=154 Identities=10% Similarity=0.068 Sum_probs=73.1
Q ss_pred cccCCChhHHHHHHHhhhhhhh-hchhHHHHHHhchHHHHHHHHHHHHHH-HHHHHHHHHchhhcCCccccCHHHHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQ-LYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~~~-~~t~~lL~~~~~~~~g~r~~sY~~l~~~~ 177 (526)
-.|+-+++-..+.+..+.++++ .++.|-..-+.|+...... . .+.+. ....+.+..-.. + .+..|..|.-++-
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~-~~~~~~~~~~~~~~p~~~-r--~~~~T~~e~l~~R 110 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-V-TAAIALIILALIFLPRYL-K--SGITTIPDFLEER 110 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-H-HHHHHHHHHHHHHHHHHH-h--cCCccHHHHHHHh
Confidence 3467778878888777766554 4668877767776421111 1 11111 112222222111 1 2256999999999
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHH--HhCCCCCCCCCCcchhh--HHHHHHHHhhhcCCCcchhh
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI--VCGPLCSSNPLTTVEWY--LVFTSLCIVLSQLPNLNSIA 253 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~--ii~~~v~~~L~~l~~l~~l~ 253 (526)
||++..++...+.++...+..+...+...+..+..++.. ..+ -+.....+. ++.+++++.-+..--++...
T Consensus 111 yg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~g-----i~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 111 YDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLG-----ISYGAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-----CcHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 999765554333222221111222222223333332211 111 011111121 11233445566777888888
Q ss_pred HhHHHHHHHH
Q 009772 254 GLSLIGAITA 263 (526)
Q Consensus 254 ~~S~~~~~~~ 263 (526)
+.-.+=.+..
T Consensus 186 ~TD~iQ~vim 195 (523)
T PRK10484 186 VSDTINGIGL 195 (523)
T ss_pred HHHHHHHHHH
Confidence 8766654433
No 72
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.62 E-value=0.78 Score=47.38 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=44.1
Q ss_pred CHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhc--C
Q 009772 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--L 246 (526)
Q Consensus 169 sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~--l 246 (526)
+..|..++-+||+++..... .....+.....+-++-.+..++.++ + .+...|.++..+..+.+.+ .
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~-~~~l~~~~~~~~~~~g~a~al~ll~----g-------~~~~~~~~~~~~~~~~ll~~~~ 110 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWI-LIFLANIATQAAEIIGIAIALNLLF----G-------IPLWIWVLLVAVIAILLLWLSS 110 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc----C-------CCcHHHHHHHHHHHHHHHHHHh
Confidence 78888888889977665533 3333334444444444444443221 1 3345666665555555444 6
Q ss_pred CCcchhhHhHHHH
Q 009772 247 PNLNSIAGLSLIG 259 (526)
Q Consensus 247 ~~l~~l~~~S~~~ 259 (526)
++.+.+..+...-
T Consensus 111 ~~y~~~E~~~~~l 123 (358)
T PF01566_consen 111 GGYRRLERILKVL 123 (358)
T ss_pred ccchHHHHHHHHH
Confidence 7777777665443
No 73
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.51 E-value=0.018 Score=61.26 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=34.5
Q ss_pred cCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHh
Q 009772 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVC 218 (526)
Q Consensus 168 ~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~ 218 (526)
.++..++|..||.+ |..+..+.....+.|-...-..+.++.+..+.....
T Consensus 71 l~~~v~sR~~FG~~-Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~ 120 (440)
T PF02133_consen 71 LPTMVLSRASFGYR-GSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIF 120 (440)
T ss_dssp --HHHHTTTTS-TT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCchhcchhccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 48889999999985 666656565566666666666778888888776543
No 74
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.39 E-value=1.6 Score=45.86 Aligned_cols=329 Identities=14% Similarity=0.197 Sum_probs=149.3
Q ss_pred CChhHHHHHHHhhhhhhhhchhHHHHHH-hc--hHHHHHHHHHHHHHHHHHH-HHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 104 GNAHYAAFHNLNAGVGFQALLLPVAFAF-LG--WSWGILSLTIAYCWQLYTL-WILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 104 ~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G--~~~giill~~~~~~~~~t~-~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
.......+-+..-..|+|=|-.|-..-+ .| |.++.+.+++.++.--.-. ..+.+. | .++++++++. |
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~-----~---~~~~~l~~~v-~ 73 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS-----G---GGIEDLASRV-G 73 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----C---CCHHHHhccc-C
Confidence 3456677788889999999999987653 33 7777777666554332222 222211 1 2788888765 5
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCC--cchhhHhHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN--LNSIAGLSL 257 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~--l~~l~~~S~ 257 (526)
|+.+.++.. ..+++.|-..+-=-..+-..+....-+.+. +.......+.+++..+...+++-|+ ++.++++-.
T Consensus 74 ~~f~~if~~--~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~---~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LT 148 (427)
T PF05525_consen 74 PKFALIFTI--LIYLSIGPLFAIPRTAAVSFEMGIAPFFPE---NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLT 148 (427)
T ss_pred cHHHHHHHH--HHHHHHHhcccCcchhhhhHHHhhhccCCc---ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 555555432 223334433221111111111111111110 1233444455555555555553221 222222222
Q ss_pred HHHHHHHHHHHhhhhhhcccCC--CCCC--CCCCCCCCCCcchHHHHH------HHHHHHHHhhccccchHHHHhhCCCC
Q 009772 258 IGAITAVTYSTMVWVLSVSQPR--PPNI--SYEPLSSASPAATVFSVM------NALGIIAFAFRGHNLAMEIQATMPST 327 (526)
Q Consensus 258 ~~~~~~~~~~~ii~~~~i~~~~--~~~~--~~~~~~~~~~~~~~~~~~------~a~gii~faf~~h~~i~~I~~~m~~~ 327 (526)
-.. +....++++.++.+.. ..+. +|. +. .-..++. -+++-++|+- .+..-.++..-
T Consensus 149 P~L---L~~l~ilii~~i~~p~g~~~~~~~~y~---~~---~f~~Gf~eGY~TMD~laal~Fg~----iIi~~i~~~g~- 214 (427)
T PF05525_consen 149 PIL---LILLAILIIKGIFSPIGPPQAPSGAYA---SN---PFFKGFLEGYQTMDALAALAFGI----IIINAIRQKGY- 214 (427)
T ss_pred HHH---HHHHHHHHHHHHHcCCCCccccchhhh---hh---HHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhCC-
Confidence 111 1222223333333321 1111 121 00 1112222 2344444433 22222333311
Q ss_pred CCCCCc--cccchhhHHHHHHHHHHHHHHHHHHHHhc---CCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhh
Q 009772 328 FKHPAH--VPMWRGAKVAYLFIAMCLFPVAIGGFWAY---GNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSS 402 (526)
Q Consensus 328 ~k~p~~--~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~f---G~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~s 402 (526)
+++++ +...++-.++...-.++|...+..|.-.- +++.+.++++....+..- . +.-..+..+.+.++++++
T Consensus 215 -~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~-G--~~G~~ll~iiv~lACLTT 290 (427)
T PF05525_consen 215 -KDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLF-G--SAGQILLGIIVFLACLTT 290 (427)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHc-C--hhHHHHHHHHHHHHHHHH
Confidence 11111 11112333455555677777777775544 344443566666532110 1 111234466777777777
Q ss_pred hhccchhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHh
Q 009772 403 FQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLI 478 (526)
Q Consensus 403 ypl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~ 478 (526)
---....+-|.+++.++ |- +. +++ ..+..++++++|.. .++.++.+ +. .+.+++|..+-+-+
T Consensus 291 aIGL~~a~a~yf~~~~~-ki----sY-~~~--v~i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 291 AIGLISACAEYFSELFP-KI----SY-KVW--VIIFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHHHHHHHHHHhc-cc----Ch-HHH--HHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 77777777788887764 11 11 111 11222333333322 25566663 56 78899998765554
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.38 E-value=1.9 Score=46.54 Aligned_cols=149 Identities=9% Similarity=0.043 Sum_probs=71.8
Q ss_pred ccCCChhHHHHHHHhhhhhhh-hchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-chhhcC-CccccCHHHHHHHH
Q 009772 101 SRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQ-LHEAVP-GKRYNRYVELAQAA 177 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~-~~~~~~-g~r~~sY~~l~~~~ 177 (526)
.|+-+++...+.+..+.+++. .++.|-...+.|+.... ......+........+.+ .++... +.+..|-.|.-+.=
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~-~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELW-IAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 466778888888877766654 56688777777874311 111111111222222222 221100 12256899999999
Q ss_pred hcccchhH--HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHh
Q 009772 178 FGERLGVW--LALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGL 255 (526)
Q Consensus 178 ~G~~~g~~--~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~ 255 (526)
||++...+ +..+............-+...+..++.+ .+ .+...-.++.+++++.-+..--++...+.
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~----~g-------i~~~~~iii~~~i~~~Yt~~GGl~av~~T 182 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFEST----FG-------LDYKTGLLIGALIIVIYTFFGGFLAVSWT 182 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-------ccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99742221 1111111111111222222333333332 22 22233344445555666677788887777
Q ss_pred HHHHHH
Q 009772 256 SLIGAI 261 (526)
Q Consensus 256 S~~~~~ 261 (526)
-.+=.+
T Consensus 183 D~iQ~~ 188 (487)
T TIGR02121 183 DFVQGL 188 (487)
T ss_pred HHHHHH
Confidence 665543
No 76
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.28 E-value=2 Score=45.66 Aligned_cols=199 Identities=14% Similarity=0.093 Sum_probs=96.1
Q ss_pred ccCHHHHHHHHhcccchhHHH--HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCC------CCCCCcchhhHHHHH
Q 009772 167 YNRYVELAQAAFGERLGVWLA--LFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCS------SNPLTTVEWYLVFTS 238 (526)
Q Consensus 167 ~~sY~~l~~~~~G~~~g~~~~--~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~ii~~~ 238 (526)
..+|+.+.|..||-...++-+ ...+.+.-+|.-+- .++..+..++..+.++... ....+..+++..+..
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 569999999999985444321 12222233444332 3555566566555543110 112233344332222
Q ss_pred HH-HhhhcCCCcchhhHhHHHHHHHHHHHHH--hhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhh-ccc
Q 009772 239 LC-IVLSQLPNLNSIAGLSLIGAITAVTYST--MVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAF-RGH 314 (526)
Q Consensus 239 v~-~~L~~l~~l~~l~~~S~~~~~~~~~~~~--ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf-~~h 314 (526)
-+ -.+...+.+++++++-..+...+...+. .++...-..+... ...-+-...+....++.++..+...+-.| ...
T Consensus 179 W~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~-~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 179 WVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSI-LGELPAGTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCc-cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 11 1244577888888887776555444333 2333322222110 10000011222334455554443332222 234
Q ss_pred cchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHH----HHHHHHhcCCCCCC-hhHhHhh
Q 009772 315 NLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPV----AIGGFWAYGNLMPS-GGMLRAL 375 (526)
Q Consensus 315 ~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~----gi~Gy~~fG~~~~~-g~il~~l 375 (526)
.|+|..-+.- |+|+... ..-.++.-+.+.+..++ +..++..||+..-+ -||++.+
T Consensus 258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~ 317 (497)
T COG1953 258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARF 317 (497)
T ss_pred cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHh
Confidence 5677777777 4443332 22234444444444444 45568889998653 4788877
No 77
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.15 E-value=2.6 Score=45.76 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=73.7
Q ss_pred cccCCChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHH-Hc---hhhcCCccccCHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILV-QL---HEAVPGKRYNRYVEL 173 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~-~t~~lL~-~~---~~~~~g~r~~sY~~l 173 (526)
-.|+-+++...+.+..+.+++.. ++.|-...+.|+..- ...+...+.. ....++. +. .++..| ..|..|.
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~T~~e~ 113 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES--WIAIGLTLGAWINWKLVAGRLRVHTEYNNN--ALTLPDY 113 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ceeHHHH
Confidence 34677888888888777776665 568888778887531 1111111111 1111111 11 111122 5688999
Q ss_pred HHHHhcccchhHHHH---HHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcc
Q 009772 174 AQAAFGERLGVWLAL---FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLN 250 (526)
Q Consensus 174 ~~~~~G~~~g~~~~~---~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~ 250 (526)
-++=||++ .+.+.. +......+..+.+=+...+..++.+ .+ .+....+++.+++++.-+..--++
T Consensus 114 l~~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~----~g-------i~~~~~iii~~~iv~iYt~~GGl~ 181 (502)
T PRK15419 114 FTGRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFEST----FG-------MSYETALWAGAAATILYTFIGGFL 181 (502)
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-------CCHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999974 333222 1111111222222122233333322 22 222333444555666677788888
Q ss_pred hhhHhHHHHHHH
Q 009772 251 SIAGLSLIGAIT 262 (526)
Q Consensus 251 ~l~~~S~~~~~~ 262 (526)
...+.-.+=.+.
T Consensus 182 aV~~TD~iQ~~i 193 (502)
T PRK15419 182 AVSWTDTVQASL 193 (502)
T ss_pred HHHHHHHHHHHH
Confidence 888876665443
No 78
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.74 E-value=4.1 Score=44.72 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=76.6
Q ss_pred cccCCChhHHHHHHHhhhhh-hhhchhHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHHHchhhcCCccccCHHHHHHHH
Q 009772 100 ESRNGNAHYAAFHNLNAGVG-FQALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQAA 177 (526)
Q Consensus 100 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~~~~-~t~~lL~~~~~~~~g~r~~sY~~l~~~~ 177 (526)
-.|+.+++...+.+..+.++ +..++.|-...+.|+.. .... +...+.+ ...+++.+--+ ..| ..|..|..+.=
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~-~g~~~~~~i~~~~~a~~lr-r~g--~~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYS-LGFLVGWPIILFLIAERLR-NLG--RYTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHH-HHHHHHHHHHHHHHHHHHH-HcC--CccHHHHHHHH
Confidence 34566677767777766555 56788888777778642 2211 1111111 11222222212 123 46999999888
Q ss_pred hcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHH
Q 009772 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSL 257 (526)
Q Consensus 178 ~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~ 257 (526)
||.+.-|.+..+..+..++.....-++-.+..++.+ .+ .+...-+++.+++++.-+..--++...|.-.
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~----~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~ 208 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELL----FG-------LNYHVAVVLVGILMVMYVLFGGMLATTWVQI 208 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 886555655444444333443444444444444433 22 1222224444555556666777877777765
Q ss_pred HHHH
Q 009772 258 IGAI 261 (526)
Q Consensus 258 ~~~~ 261 (526)
+=.+
T Consensus 209 iQ~~ 212 (549)
T TIGR02711 209 IKAV 212 (549)
T ss_pred HHHH
Confidence 5433
No 79
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.35 E-value=4.4 Score=42.52 Aligned_cols=214 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred CChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHchh--hcCCccccCHHHHHHHHhc
Q 009772 104 GNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLYTL-WILVQLHE--AVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 104 ~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~~t~-~lL~~~~~--~~~g~r~~sY~~l~~~~~G 179 (526)
.|...=+...+.+.||-|- .-.||-..+-|-.. .++.....+-..+. .++.|..- +..+....+|+.+.. +
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgA--Fll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGA--FLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcch--HHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 4456666677778888874 56888877766532 22222222222222 34444421 111111346776665 3
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCC---------CCcchhhHHHHHHHHh---hhcCC
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNP---------LTTVEWYLVFTSLCIV---LSQLP 247 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~ii~~~v~~~---L~~l~ 247 (526)
| ..+++..+.+... +..+.-|.+++|-.+..++....+....+.+ .++....+.+..+.+. +..-|
T Consensus 84 ~-~~~~~G~~gv~~~-~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~ 161 (439)
T COG0733 84 K-KWEWIGWFGVLGG-FLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSR 161 (439)
T ss_pred c-cchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 4 3555555444333 6677778888888777776655532100000 0111111111111111 11223
Q ss_pred Ccch-hhHhHHHHHHHHHHHHHhhhhhhccc-CCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhcccc-chHHHHhhC
Q 009772 248 NLNS-IAGLSLIGAITAVTYSTMVWVLSVSQ-PRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHN-LAMEIQATM 324 (526)
Q Consensus 248 ~l~~-l~~~S~~~~~~~~~~~~ii~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~-~i~~I~~~m 324 (526)
-.++ +.+.|.+-.-..++..+++++.++.. +..++.++--.++.+...+..-+..++|...|+-+--. .+..--+.+
T Consensus 162 GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL 241 (439)
T COG0733 162 GVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYL 241 (439)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333 55555554443333333344444432 22222222100111122335567889999999887444 444444445
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.31 E-value=0.64 Score=47.44 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=67.5
Q ss_pred CChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772 104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCW----QLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (526)
Q Consensus 104 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~----~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G 179 (526)
.+.+.-.-|=..++-|+|-+.=|..-++-||.++.+.+++-+++ .-|....+ +-++.| .|.+|++++..|
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~---SvR~~G---~Si~~i~~~~lG 125 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA---SVRHKG---KSIGEIAGKYLG 125 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh---hhcCCC---ccHHHHHHHHHH
Confidence 34466777778899999999999999999999888877654333 23332222 222333 499999999999
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q 009772 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMK 211 (526)
Q Consensus 180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~ 211 (526)
|+.++++..++.+.+ .-...++....++.+.
T Consensus 126 ~~~~~lf~~f~~~~l-ilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 126 KRAKKLFLIFIFFLL-ILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 986666655444443 5555555555555543
No 81
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.28 E-value=4.9 Score=42.72 Aligned_cols=36 Identities=6% Similarity=0.080 Sum_probs=20.7
Q ss_pred cCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHH
Q 009772 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLIL 204 (526)
Q Consensus 168 ~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii 204 (526)
.+..|+.++-|||++.... .+.....+.++..+-++
T Consensus 94 ~~l~~~ir~~~~~~~~~~~-~~~~~l~~~~~~~~e~~ 129 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFL-WIQAELAIMATDLAEVI 129 (439)
T ss_pred CCHHHHHHHHCCchHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3799999999998655543 32333333444444333
No 82
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=95.07 E-value=5.5 Score=42.07 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=143.7
Q ss_pred ChhHHHHHHHhhhhhhhhchhHHHHH-Hhc--hHHHHHHHHHHHHHH-HHHHHHHHHchhhcCCccccCHHHHHHHHhcc
Q 009772 105 NAHYAAFHNLNAGVGFQALLLPVAFA-FLG--WSWGILSLTIAYCWQ-LYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (526)
Q Consensus 105 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~giill~~~~~~~-~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~ 180 (526)
..+...+-+..-..|+|=|=.|-..- +.| |..+.+.+++.++.- ..+...+.+. | .+++|++++. ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~-----~---g~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV-----G---GGVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----C---CCHHHHhhhc-ch
Confidence 46777888999999999999998765 344 666666555544322 2222222221 1 2788888765 55
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCC--cchhhHhHHH
Q 009772 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN--LNSIAGLSLI 258 (526)
Q Consensus 181 ~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~--l~~l~~~S~~ 258 (526)
+.+.++.. ..+++.|-+.+-=-..+-..+--+.-+.++ .......+.+++..+...+++-|+ ++.++++-.-
T Consensus 80 ~f~~~f~~--~i~l~IGP~~aiPRtaavsfEm~i~p~~~~----~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP 153 (439)
T PRK15433 80 VAGVLLAT--VCYLAVGPLFATPRTATVSFEVGIAPLTGD----SALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAP 153 (439)
T ss_pred HHHHHHHH--HHHHHHhhccccCCccccchhheeeccCCc----ccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHH
Confidence 55554422 333334433221111111111000001100 001112233444444445553221 2223322222
Q ss_pred HHHHHHHHHHhhhhhhcccCCC----CCCCCCCCCCCCCcchH---HHHHHHHHHHHHhhccccchHHHHhh-CCCCCCC
Q 009772 259 GAITAVTYSTMVWVLSVSQPRP----PNISYEPLSSASPAATV---FSVMNALGIIAFAFRGHNLAMEIQAT-MPSTFKH 330 (526)
Q Consensus 259 ~~~~~~~~~~ii~~~~i~~~~~----~~~~~~~~~~~~~~~~~---~~~~~a~gii~faf~~h~~i~~I~~~-m~~~~k~ 330 (526)
..+ ....++++.++.+... +..+|. +....... .+-.-+++-++|+-. .+-.+.+. . ++
T Consensus 154 ~LL---~~l~~lii~~i~~p~g~~~~~~~~y~---~~~f~~Gf~eGY~TMDalaal~Fg~i---ii~~i~~~G~----~~ 220 (439)
T PRK15433 154 LKI---IALVILSVAAIVWPAGSISTATEAYQ---NAAFSNGFVNGYLTMDTLGAMVFGIV---IVNAARSRGV----TE 220 (439)
T ss_pred HHH---HHHHHHHHHHHhcCCCCCCCcchhhh---hhhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHcCC----CC
Confidence 222 1112222333332111 101121 00000101 123345555555542 22233332 3 22
Q ss_pred CCcc--ccchhhHHHHHHHHHHHHHHHHHHHHh---cCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 009772 331 PAHV--PMWRGAKVAYLFIAMCLFPVAIGGFWA---YGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQI 405 (526)
Q Consensus 331 p~~~--~m~~v~~~a~~i~~~~Y~~~gi~Gy~~---fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl 405 (526)
+++. ...++-.++...-.++|...+..|... +++..+.++++....... -.++...+..+.+.++++++---
T Consensus 221 ~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~---~G~~G~~ll~iiv~lACLTTaIG 297 (439)
T PRK15433 221 ARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT---FGGGGSFLLAALIFIACLVTAVG 297 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 122333445556677888888887544 332223245655542211 12233344456667777777766
Q ss_pred cchhHHHHHHhhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHh
Q 009772 406 YSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLI 478 (526)
Q Consensus 406 ~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~ 478 (526)
....+-+.+++.+. .+ +.....+..++++.+|.+ .++.++++ .. .+.+++|...-+-.
T Consensus 298 Li~a~a~~f~~~~~----is-----Y~~~v~i~~l~S~~lSn~--G~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 298 LTCACAEFFAQYVP----LS-----YRTLVFILGGFSMVVSNL--GLSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHHHHHHHhhcC----Cc-----HHHHHHHHHHHHHHHHHh--HHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 66677777766542 11 111112222333333321 24556653 56 78888888765543
No 83
>PRK09395 actP acetate permease; Provisional
Probab=94.76 E-value=8 Score=42.46 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=75.2
Q ss_pred ccCCChhHHHHHHHhhhhhh-hhchhHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772 101 SRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (526)
Q Consensus 101 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~~~~-~t~~lL~~~~~~~~g~r~~sY~~l~~~~~ 178 (526)
.|+-+++...+.+..+.+|+ ..++.|-.....|+.... . .+...+.. ...+++.+-.+ ..+ ..|+.|..+.=|
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~-~-~~~~~~g~~~~~~~~~~~~r-~~g--~~T~~d~l~~Ry 142 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLI-Y-SIGFLVGWPIILFLIAERLR-NLG--KYTFADVASYRL 142 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHH-H-HHHHHHHHHHHHHHHHHHHh-hCC--CccHHHHHHHHc
Confidence 45677777777777776665 457788777778874311 1 11111111 11222222112 123 579999999999
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHH
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~ 258 (526)
|++.-|.+..+......+....+-++-.+..++.+ .+ .+...-+++.+++++..+..--++...|.-.+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~----~g-------i~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL----FG-------LNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-------CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 96545555443333322333333333334434333 22 22333344455555666777888887777665
Q ss_pred HH
Q 009772 259 GA 260 (526)
Q Consensus 259 ~~ 260 (526)
=.
T Consensus 212 Q~ 213 (551)
T PRK09395 212 KA 213 (551)
T ss_pred HH
Confidence 43
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=92.44 E-value=2.1 Score=46.85 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=61.3
Q ss_pred hHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHchhhcCCccccCHHHHHHHHhcccc
Q 009772 107 HYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCW----QLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (526)
Q Consensus 107 ~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~----~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~ 182 (526)
+--.-|=..++-|+|-+.=|..-++.||.++.+.+++-.++ .-|... -++-++.| .|..|++++-.|++.
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L---~~S~R~~G---rSig~ia~~~iG~~~ 159 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVL---FVSTRRDG---RSLGELVKEEMGPTA 159 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhe---eeeecCCC---ccHHHHHHHHhhHHH
Confidence 44555777899999999999999999999999887764332 222211 12222333 499999999999986
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhhhH
Q 009772 183 GVWLALFPTVYLSAGTATTLILLGGETM 210 (526)
Q Consensus 183 g~~~~~~~i~~~~~g~~v~yii~~~~~l 210 (526)
|..+..+..+.+ .-...++..++.+.+
T Consensus 160 ~~lfli~i~~il-iiviAvfalvvv~al 186 (701)
T PRK15015 160 GVIALVACFMIM-VIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 665544333332 333444444443333
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.29 E-value=1.8 Score=44.98 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=55.1
Q ss_pred ccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcC
Q 009772 167 YNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246 (526)
Q Consensus 167 ~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l 246 (526)
..-..++++..||+ .|..+..+.+..-|++++++.+...+|.++.+... .+.+.|.++++++...++.
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k----------~~y~~~v~~~~l~s~~ia~- 321 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK----------LSYKTWVIVFTLFSFIVAN- 321 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHHHH-
Confidence 44688999999999 57777777888888999999999988887765321 4456677766666555553
Q ss_pred CCcchhhHhH
Q 009772 247 PNLNSIAGLS 256 (526)
Q Consensus 247 ~~l~~l~~~S 256 (526)
-.++++-.++
T Consensus 322 ~Gl~~Ii~~~ 331 (378)
T TIGR00796 322 LGLTQIISIS 331 (378)
T ss_pred hCHHHHHHHH
Confidence 2445544443
No 86
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=90.92 E-value=11 Score=40.59 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=55.1
Q ss_pred ChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-HchhhcCCccccCHHHHHHHHhcccch
Q 009772 105 NAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILV-QLHEAVPGKRYNRYVELAQAAFGERLG 183 (526)
Q Consensus 105 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~-~~~~~~~g~r~~sY~~l~~~~~G~~~g 183 (526)
+.+...-|=..++-|+|-+.=|.--++.||..|.+.+++-.++.---=..++ -.+-++.| .|..|++++..|++.|
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G---~Si~~ia~~~lG~~a~ 129 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGG---KSIGEIAGKYLGRTAK 129 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCC---ccHHHHHHHHhhhhHH
Confidence 4456666777789999999999999999999999887664433211111111 11222333 4999999999999866
Q ss_pred hHHHH
Q 009772 184 VWLAL 188 (526)
Q Consensus 184 ~~~~~ 188 (526)
.+...
T Consensus 130 ~~~~~ 134 (575)
T COG1966 130 VFFLL 134 (575)
T ss_pred HHHHH
Confidence 65533
No 87
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=89.96 E-value=15 Score=40.64 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 009772 299 SVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (526)
Q Consensus 299 ~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~G 358 (526)
+|-..+|++.-+-.|...=-.+-.|+ |+|++. ..|....+...++++|.++.++-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSkS-IP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGEL----KAPSKS-IPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccc----cCcccc-CCccchHHHHHHHHHHHHHHHHh
Confidence 34455565544433333323334566 889875 45889999999999999887653
No 88
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=89.79 E-value=30 Score=36.72 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=94.0
Q ss_pred ccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcC
Q 009772 167 YNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246 (526)
Q Consensus 167 ~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l 246 (526)
..|++|....=|+.+.-|++..+..+...+--.++-++-.|..+..+++ .+...-+++.+++++.-..+
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-----------v~~~vgv~ig~ilm~~Yvv~ 171 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-----------VPYHVGVVIGGILMMVYVVL 171 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-----------CCceeehhhHhHHHHHHHHh
Confidence 4689998877777766777766665555555555555555555554433 11233344455555666678
Q ss_pred CCcchhhHhHHHHHHH-HHHHHHhhhhhhcccCCCCC--------CC-C----CCCCCCCCcchHHHHHHHHHHHHHhhc
Q 009772 247 PNLNSIAGLSLIGAIT-AVTYSTMVWVLSVSQPRPPN--------IS-Y----EPLSSASPAATVFSVMNALGIIAFAFR 312 (526)
Q Consensus 247 ~~l~~l~~~S~~~~~~-~~~~~~ii~~~~i~~~~~~~--------~~-~----~~~~~~~~~~~~~~~~~a~gii~faf~ 312 (526)
--++...|+..+=.+. ++.+.+..+......+..+. .. . +..+++....++.+++.-.=..++
T Consensus 172 GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~--- 248 (529)
T COG4147 172 GGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV--- 248 (529)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH---
Confidence 8899999987765443 33333333333322221110 00 0 001111122333333322222233
Q ss_pred cccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 009772 313 GHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWA 361 (526)
Q Consensus 313 ~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~ 361 (526)
|..-+|.+.---- .-|+-+.-++.+.++..++..+|+..-+.|+.+
T Consensus 249 GTAgLPHil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 249 GTAGLPHILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred ccCCCCeEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444332211 123344444889999999999999888887655
No 89
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=88.56 E-value=41 Score=36.64 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=23.2
Q ss_pred CChhHHHHHHHhhhhhhh-hchhHHHHHHhc
Q 009772 104 GNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLG 133 (526)
Q Consensus 104 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G 133 (526)
.+..+-++..+...+|.| +.-.|+-..+-|
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~g 35 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENG 35 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 455777888889999998 778999866555
No 90
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=88.11 E-value=37 Score=35.53 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=15.3
Q ss_pred cCHHHHHHHHhcccchhHHHHH
Q 009772 168 NRYVELAQAAFGERLGVWLALF 189 (526)
Q Consensus 168 ~sY~~l~~~~~G~~~g~~~~~~ 189 (526)
.+..|+.++-|+| +.++...+
T Consensus 64 ~~l~~~~r~~~~~-~~~~~~~~ 84 (390)
T TIGR01197 64 LDLAEVCREHYPK-VPRITLWI 84 (390)
T ss_pred CCHHHHHHHHCCC-chHHHHHH
Confidence 4899999999998 45554443
No 91
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=87.24 E-value=18 Score=38.28 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=53.3
Q ss_pred cCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhh
Q 009772 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS 244 (526)
Q Consensus 168 ~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~ 244 (526)
.-..+++++.||+ .|.++..+.+..-|+-++++.+...+|.+++.++. .+.+.|.++++++-..++
T Consensus 261 ~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k----------isY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 261 ELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK----------ISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cChHHHHHHHHHHHHHHH
Confidence 3578889999999 58888888888889999999999999999887652 446778877777666655
No 92
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=85.55 E-value=52 Score=34.68 Aligned_cols=48 Identities=21% Similarity=0.097 Sum_probs=35.0
Q ss_pred CCChhHHHHHHHhhhhhhhhch-hHHHHHHhchHHHHHHHHHHHHHHHHH
Q 009772 103 NGNAHYAAFHNLNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYT 151 (526)
Q Consensus 103 ~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~~~~~t 151 (526)
+-|.+++.+.-+.+.+|+|=++ ...|...+|= .+++.+-+.+++..-+
T Consensus 18 ~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 18 GISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMAT 66 (416)
T ss_pred CcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHH
Confidence 4678999999999999999654 7777776653 4666666666555444
No 93
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=84.89 E-value=51 Score=34.00 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=65.1
Q ss_pred chhHHHHHHhchHHHHHHHHHHHHHH-HHHHHHHHHchhh-cCCccccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHH
Q 009772 123 LLLPVAFAFLGWSWGILSLTIAYCWQ-LYTLWILVQLHEA-VPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTAT 200 (526)
Q Consensus 123 L~LP~af~~~G~~~giill~~~~~~~-~~t~~lL~~~~~~-~~g~r~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v 200 (526)
++=|-+--+.|+-| +++...-+-. +.+.-.+.+=..+ ..+....+-.|+-++=|-.+.-.++..+.......+.++
T Consensus 61 igGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~ 138 (473)
T COG4145 61 IGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMT 138 (473)
T ss_pred cCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34488888888766 3333322222 2222222221110 001124578888877765555566666666666677888
Q ss_pred HHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhH
Q 009772 201 TLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAG 254 (526)
Q Consensus 201 ~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~ 254 (526)
+-.+-++..++.... .+...-.++++..+..-.....++....
T Consensus 139 ~qfiGgarLlE~~~g-----------idY~tgL~ifa~~V~iYt~fGGFRAvvl 181 (473)
T COG4145 139 VQFIGGARLLETALG-----------IDYTTGLLIFAVSVAIYTAFGGFRAVVL 181 (473)
T ss_pred HHHhhHHHHHHHHHC-----------CCchhhHHHHHHHHHHHHhhcceeeeeh
Confidence 877777777765422 2344556667766666555555555433
No 94
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=84.33 E-value=78 Score=35.67 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=80.9
Q ss_pred cCCChhHHHHHHHhhhhhhhh-chhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhh--cCCccccCHHHHHHHHh
Q 009772 102 RNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA--VPGKRYNRYVELAQAAF 178 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~--~~g~r~~sY~~l~~~~~ 178 (526)
|-|+......-.+..+.|.=. +=|-+..-..|...+.++++++++.++.|+.-+...+.. +++ --+|--+.+ .+
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa--GGsYfmISR-sL 189 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA--GGSYFMISR-SL 189 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCeeEEEec-cc
Confidence 345555555555666666533 336777778888888888888888888887776665432 111 125654443 45
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHH-HHHH--HhCC-CC----CCCCCCcchhhHHHHHHH--HhhhcCCC
Q 009772 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKM-FFQI--VCGP-LC----SSNPLTTVEWYLVFTSLC--IVLSQLPN 248 (526)
Q Consensus 179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~-~~~~--~~~~-~~----~~~~~~~~~~~ii~~~v~--~~L~~l~~ 248 (526)
|+..|-.+.....+...+ +...|++-.-+.+-. +++. +++. +- ....-+.+.|-.++.++. +.+.=+|-
T Consensus 190 GPEFGgAVGlcFYLgtT~-AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~ 268 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTV-AAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKF 268 (1075)
T ss_pred CccccceeeehhhhhhHH-HHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHH
Confidence 666665443333332211 222355543333221 2221 1110 00 000112334433332222 22233666
Q ss_pred cchhhHhHHHHHHHHHH
Q 009772 249 LNSIAGLSLIGAITAVT 265 (526)
Q Consensus 249 l~~l~~~S~~~~~~~~~ 265 (526)
.+.++.+++..++.++.
T Consensus 269 Vnk~A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 269 VNKFAPVFLACVILSIL 285 (1075)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 67777777777766554
No 95
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=83.67 E-value=66 Score=34.34 Aligned_cols=266 Identities=16% Similarity=0.165 Sum_probs=120.4
Q ss_pred cccccc-CCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCcc-ccCHHHHH
Q 009772 97 PITESR-NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKR-YNRYVELA 174 (526)
Q Consensus 97 ~~~~~~-~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r-~~sY~~l~ 174 (526)
|++++| +=++++-+.-=+...++++.--+--+.-++|+-+- -...+++..|....+.-.....+|.. +.+++-..
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLsww---q~~~tv~vG~~~~~~f~~lns~~G~~yhIsFpv~s 124 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWW---QTWITVWVGYLFTAIFLVLNSRPGSDYHISFPVLS 124 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHH---HHHHHHHHHHHHHHHHHHHccCCCcccccceeeee
Confidence 554443 34566555555555566666666666667774331 12222333333322222222234433 35777778
Q ss_pred HHHhcccchhHHHHHHHHHHHHHhHHHHHH---hhhhhHHHHHHHHhCC------CCCCCCCCcchhh--HHHHHHHHhh
Q 009772 175 QAAFGERLGVWLALFPTVYLSAGTATTLIL---LGGETMKMFFQIVCGP------LCSSNPLTTVEWY--LVFTSLCIVL 243 (526)
Q Consensus 175 ~~~~G~~~g~~~~~~~i~~~~~g~~v~yii---~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~--ii~~~v~~~L 243 (526)
|..||-. |.....+.-. ...|+=|=+ ++|+-.+.+++....+ +-.+...+..+|+ ++|-++..|.
T Consensus 125 R~sFGiy-gS~~pIi~R~---vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 125 RSSFGIY-GSLWPIINRV---VMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeehhhh-HhHHHHHHHH---HHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 8888873 4432221111 222332222 4555555555544432 1111234445554 3333444443
Q ss_pred hcCCCcchhhHhHHHHHHHHHH--HHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhc-cccchHHH
Q 009772 244 SQLPNLNSIAGLSLIGAITAVT--YSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFR-GHNLAMEI 320 (526)
Q Consensus 244 ~~l~~l~~l~~~S~~~~~~~~~--~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~-~h~~i~~I 320 (526)
- .....+++++-....+.+.. +.++++..+-.+|. .++..++ ...+.....|.+..++.-..=.|. ...|.|..
T Consensus 201 ~-~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~-G~l~~~~-st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDF 277 (572)
T KOG2466|consen 201 Y-WFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGL-GHLFDSK-STVSGSAHAWAFVRSIMSCIANFSTLIVNAPDF 277 (572)
T ss_pred e-eccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCc-cccccCC-CcccccchhHHHHHHHHHHHhccchhhccCchh
Confidence 3 33344455443333332222 23334444334442 1121110 112222334455554433332332 44566666
Q ss_pred HhhCCCCCCCCCccccchh--hHHHHHHHHHHHHHHHHHHHHhcCCCCCC-hhHhHhhh
Q 009772 321 QATMPSTFKHPAHVPMWRG--AKVAYLFIAMCLFPVAIGGFWAYGNLMPS-GGMLRALF 376 (526)
Q Consensus 321 ~~~m~~~~k~p~~~~m~~v--~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~-g~il~~l~ 376 (526)
-+-- |+|.......+ +-+.+.+..++=.+++..++..||.+.-+ -+|++++.
T Consensus 278 sRF~----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 278 SRFA----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred Hhhc----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 6666 55644331122 22334444444455667789999998753 47777774
No 96
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=81.67 E-value=17 Score=37.89 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=58.4
Q ss_pred CHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCC
Q 009772 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN 248 (526)
Q Consensus 169 sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~ 248 (526)
=..+..+..||+ .|+++...++..-|+-++++.+...+|.++...+. .+...|..+++.+...++. -.
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~----------~SY~~~v~if~i~sflvan-~G 331 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK----------LSYKTWVIIFTLISFLVAN-LG 331 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHHHH-hh
Confidence 577789999999 69988888888889999999999999998877653 4567888888877766552 23
Q ss_pred cchhhHhHH
Q 009772 249 LNSIAGLSL 257 (526)
Q Consensus 249 l~~l~~~S~ 257 (526)
++++-..|.
T Consensus 332 L~~Ii~isv 340 (431)
T COG1114 332 LEQIIKISV 340 (431)
T ss_pred HHHHHHHHH
Confidence 344443333
No 97
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=78.70 E-value=95 Score=32.98 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=26.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHhc--cchHHHHHHhhhh
Q 009772 427 SIWVRSGFRVFYGFVSFFIGVAL--PFLSSLAGLLGGL 462 (526)
Q Consensus 427 ~~~~r~~~r~~~~~~~~~iA~~v--P~~~~vi~lvGa~ 462 (526)
+|.+|.+.|.+.++.+.++++.. .+++.+.++.-.+
T Consensus 355 ~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl 392 (503)
T KOG1291|consen 355 PWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVL 392 (503)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHH
Confidence 46677888999999999999875 4566666654443
No 98
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=69.19 E-value=14 Score=40.05 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=61.1
Q ss_pred HHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhcccchhHHH
Q 009772 108 YAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLA 187 (526)
Q Consensus 108 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G~~~g~~~~ 187 (526)
.+..|+..-|+ .|=+++...+.|...|++++.+...++..|..-.+.-.++..-+.--.|-=++ +.+|+..|--+.
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis-~slg~efggsig 114 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLIS-RSLGPEFGGSIG 114 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEE-ecccccccchhH
Confidence 33444444332 35689999999999999988888777777764443333221000011232222 334665555443
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHH
Q 009772 188 LFPTVYLSAGTATTLILLGGETMKMFFQIV 217 (526)
Q Consensus 188 ~~~i~~~~~g~~v~yii~~~~~l~~~~~~~ 217 (526)
.+..+.. .=.|..|++-.++.+..+++..
T Consensus 115 iIy~f~~-aVa~am~~vgfaEsv~~l~~~~ 143 (643)
T KOG2083|consen 115 IIYAFAN-AVATAMYVVGFAESVAHLFETE 143 (643)
T ss_pred HHHHHHH-HHHHHHhhhhHHHHHHHHHHhc
Confidence 4333333 4456668999999999888764
No 99
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=68.15 E-value=1.6e+02 Score=30.88 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh---cCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHH
Q 009772 339 GAKVAYLFIAMCLFPVAIGGFWA---YGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFE 415 (526)
Q Consensus 339 v~~~a~~i~~~~Y~~~gi~Gy~~---fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le 415 (526)
+-.++-..-..+|..++..|-.. .++..+.+.|+....++.-.+... .+..+.+.++++++---..-.+-|.+.
T Consensus 229 aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~---~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 229 AGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGS---ILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555567788888777322 233333257777663321001011 233456667777776666666667776
Q ss_pred hhhccccccccccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHh
Q 009772 416 ASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLI 478 (526)
Q Consensus 416 ~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~ 478 (526)
+.+.+ ..+-.+.+++.++++++|.. .++.++. ++. .+.+++|..+-+..
T Consensus 306 ~~~p~--------~SY~~~v~if~i~sflvan~--GL~~Ii~----isvPvL~~iYPiaI~Lv~ 355 (431)
T COG1114 306 KLVPK--------LSYKTWVIIFTLISFLVANL--GLEQIIK----ISVPVLTAIYPIAIALVL 355 (431)
T ss_pred Hhccc--------ccHHHHHHHHHHHHHHHHHh--hHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 66531 11112223344445544422 2455555 366 78888998765543
No 100
>PLN02680 carbon-monoxide oxygenase
Probab=63.44 E-value=76 Score=30.52 Aligned_cols=96 Identities=16% Similarity=0.314 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhh
Q 009772 296 TVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRAL 375 (526)
Q Consensus 296 ~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l 375 (526)
++-.++..+|.+.+ .++..+. ++.. |.+++.+|.+.+..-..+++...+|+..-..|.|+.. + .|+
T Consensus 48 n~HPlLM~~Gfi~l--~geAIL~--yr~~------~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~---~-~nf 113 (232)
T PLN02680 48 NVHPVLMVIGLVLL--NGEAMLA--YKTV------PGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKG---I-DNF 113 (232)
T ss_pred echHHHHHHHHHHH--HHHHHhc--cccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---c-ccc
Confidence 44456666665542 2222222 4445 2234445788888888888888888876666655433 2 233
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 376 FQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
+ +-+.|+...+.+++.++.+..+..+.+|.
T Consensus 114 y-----SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 114 Y-----SLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred c-----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2 23578877888888888888887777774
No 101
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=59.87 E-value=44 Score=35.44 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=48.5
Q ss_pred CHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhh
Q 009772 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS 244 (526)
Q Consensus 169 sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~ 244 (526)
-....+++.+|+ +|+++..+.+..-|+-++++.+...++.+++.++ .+.+.|.++++++.++++
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----------isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----------LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CcHHHHHHHHHHHHHHHH
Confidence 456668889999 5888878788888899999998888888776532 345677777777777666
No 102
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=53.72 E-value=3e+02 Score=30.34 Aligned_cols=34 Identities=18% Similarity=-0.080 Sum_probs=21.7
Q ss_pred cCCChhHHHHHHHhhhhhhh-hchhHHHHHHhchH
Q 009772 102 RNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWS 135 (526)
Q Consensus 102 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~ 135 (526)
|+-.++-....+..+.+|++ ++++|---...|.-
T Consensus 45 r~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~ 79 (585)
T KOG2349|consen 45 RSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQ 79 (585)
T ss_pred CcceEEEeehhhhhhhhcceeeecCchHHHHHHHH
Confidence 34445555556666666655 57888877777754
No 103
>PLN00151 potassium transporter; Provisional
Probab=53.61 E-value=4e+02 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 009772 303 ALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAY 362 (526)
Q Consensus 303 a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~f 362 (526)
.+|-+..+.+|...+ +++| -|=++++ +.+|+.....--++++.+|-.+|
T Consensus 349 ~LGgVvLciTGaEAL---fADL----GHFg~~s----Iqiaw~~~V~P~LlL~Y~GQaA~ 397 (852)
T PLN00151 349 ALGGCVLCATGSEAM---FADL----GYFSVRS----IQLAFTCLVLPCLLLAYMGQAAY 397 (852)
T ss_pred Eecceeeeeccchhh---hccc----CCCCccc----eeeeehhhHHHHHHHHHcchHHH
Confidence 477777777777654 7888 4444433 44444433333344455554444
No 104
>TIGR00909 2A0306 amino acid transporter.
Probab=52.42 E-value=3e+02 Score=28.78 Aligned_cols=46 Identities=9% Similarity=-0.109 Sum_probs=32.0
Q ss_pred CHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHH
Q 009772 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ 215 (526)
Q Consensus 169 sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~ 215 (526)
...++.++..|+. +..+..+.....+++.+.+.+...+..+..+.+
T Consensus 265 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGI-GGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667778777775 444445556666688888888888887776543
No 105
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=51.20 E-value=23 Score=32.24 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=53.9
Q ss_pred hhhHhhhhhcccccccCccCCC-CCCCCCcccccccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHH
Q 009772 68 PMKRVLVNMKGYLEEVGHLTKL-NPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYC 146 (526)
Q Consensus 68 p~~~~~~~~~~~~e~~~~~~~~-~~~~~~l~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ 146 (526)
|..+..+..++|.+.++-.-.. |++.+-....-.-..|++.|+|..+.+.+|.+.|+|=.....-.+.+-...+ .+
T Consensus 41 p~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L---~l 117 (173)
T PF12046_consen 41 PPDEVLEQLKAYFEQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLL---VL 117 (173)
T ss_pred CHHHHHHHHHHHHHhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHH---HH
Confidence 3466677788888887765433 3333333222222478999999999999999999987766644432222222 23
Q ss_pred HHHHHHHHHHHc
Q 009772 147 WQLYTLWILVQL 158 (526)
Q Consensus 147 ~~~~t~~lL~~~ 158 (526)
++=+++....+-
T Consensus 118 LsPlAG~~Yw~k 129 (173)
T PF12046_consen 118 LSPLAGIFYWQK 129 (173)
T ss_pred Hhhhhhhhhhhc
Confidence 445555555443
No 106
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=48.15 E-value=41 Score=32.20 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHh---------hhhhh-chhhhHhhHHHHHhhCCCC--c---chhHHHHHHHHHHHHHH
Q 009772 437 FYGFVSFFIGVALPFLSSLAGLL---------GGLTL-PVTFAYPCFMWVLIKKPTK--Y---SFNWYFNWILGWLGVAF 501 (526)
Q Consensus 437 ~~~~~~~~iA~~vP~~~~vi~lv---------Ga~~~-~l~filP~l~~lk~~~~~~--~---~~~~~~~~~l~~~g~~~ 501 (526)
+.++.++++|..++.++-++..+ ||.++ -++++= |+.+-|... . ...+|+-|+++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 34455666777777666555543 67777 666655 444422211 1 13467889999999999
Q ss_pred HHHHHHH
Q 009772 502 SLAFSIG 508 (526)
Q Consensus 502 ~v~g~~~ 508 (526)
.+-+++.
T Consensus 237 ~lr~~i~ 243 (262)
T KOG4812|consen 237 FLRGFIN 243 (262)
T ss_pred HHHHHHh
Confidence 9888764
No 107
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=47.29 E-value=22 Score=24.37 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009772 339 GAKVAYLFIAMCLFPVAIGGFWAYGNLMP 367 (526)
Q Consensus 339 v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~ 367 (526)
+..+++.+..++..+.|..-|.+||+..+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 44566777777778888888999997655
No 108
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=47.10 E-value=53 Score=29.86 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHH
Q 009772 182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI 261 (526)
Q Consensus 182 ~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~ 261 (526)
+|.++..+++...+++++..|-.+.+..-........ .-..|.+++.++--.+..++++.++.+-..+..+
T Consensus 68 ~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~Y---------G~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~ 138 (173)
T PF11085_consen 68 LGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGILY---------GLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTL 138 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH---------HHHHHHHHHHHhcccccCChhhhhCchhHHHHHH
Confidence 6777777777777777777776654433221111111 1122333332222223356677777776666666
Q ss_pred HHHHHHHhhhhhhccc
Q 009772 262 TAVTYSTMVWVLSVSQ 277 (526)
Q Consensus 262 ~~~~~~~ii~~~~i~~ 277 (526)
+....-.+.+++++..
T Consensus 139 CiyiLyGlFIGYSIsf 154 (173)
T PF11085_consen 139 CIYILYGLFIGYSISF 154 (173)
T ss_pred HHHHHHHHHhceeehh
Confidence 5554444445566554
No 109
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=42.63 E-value=2.4e+02 Score=24.93 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=47.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
.+|.+....-..+++..++|+..-..+.++... .+++ ....|+..++.+++.++.+..+..+.+|.
T Consensus 39 ~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~----~hf~-----SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 39 STKILHGLLHIMALVISLVGLVAVFDYHQANGY----PDMY-----SLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC----Cccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346688888888888888888776666555332 2332 23568877888899999999988877774
No 110
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.32 E-value=23 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009772 337 WRGAKVAYLFIAMCLFPVAIGGFWAYGNLMP 367 (526)
Q Consensus 337 ~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~ 367 (526)
..+..+++.+..++..+.|..-|.+||+..+
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 3556667777777777777777888998755
No 111
>PRK11281 hypothetical protein; Provisional
Probab=42.12 E-value=3.4e+02 Score=32.68 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009772 338 RGAKVAYLFIAMCLFPVAIGGFWAYGNL 365 (526)
Q Consensus 338 ~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~ 365 (526)
+++.++.+.+....+.+...||+.+...
T Consensus 544 ~al~~t~l~alp~~l~~~~~g~~~~~~~ 571 (1113)
T PRK11281 544 KAILITLLLALPVTLIFLAVGLILLTDA 571 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677777777777888888999887643
No 112
>CHL00020 psbN photosystem II protein N
Probab=39.63 E-value=21 Score=24.47 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009772 338 RGAKVAYLFIAMCLFPVAIGGFWAYGNLMP 367 (526)
Q Consensus 338 ~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~ 367 (526)
.+..+++.+..++..+.|..-|.+||+..+
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 345566677777777777777888998655
No 113
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=38.93 E-value=4.9e+02 Score=27.40 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=98.0
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhh
Q 009772 340 AKVAYLF-IAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASY 418 (526)
Q Consensus 340 ~~~a~~i-~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le~~~ 418 (526)
+..+..+ ..+-.++..+.++..|+.--+ +.-.++.+..+ +.+. ..........+...+++...++++...-+.+
T Consensus 227 ~~k~~~~~~~~~~vlyi~~~~~~~~~~~~--~~~~~il~~~~--~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 227 VRKAILIGSLIALVLYILVGFFVFGCFGS--LVFGNILAAKE--QNIS-LLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccHHHHHHccC--chHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 4444444 455567888999999988766 45555543322 2222 2234555566666899999999887765533
Q ss_pred ccc----------cccccccchhhhhHHHHHHHHHHHHHhccc-hHHHHHHhhhhhh-chhhhHhhHHHHHhhCCC--Cc
Q 009772 419 TSR----------TNRPCSIWVRSGFRVFYGFVSFFIGVALPF-LSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPT--KY 484 (526)
Q Consensus 419 ~~~----------~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~--~~ 484 (526)
... .++.+.+..|..........+.+.++..|. +-...+.+|++.. ..+-++|.+++++-++.. ..
T Consensus 302 gv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~ 381 (415)
T COG0814 302 GVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP 381 (415)
T ss_pred CchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 210 111122333555555666677777777775 6677788887777 889999999998875432 22
Q ss_pred chhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 009772 485 SFNW-YFNWILGWLGVAFSLAFSIGGLW 511 (526)
Q Consensus 485 ~~~~-~~~~~l~~~g~~~~v~g~~~si~ 511 (526)
..++ ..+.....+-++.++....+.+.
T Consensus 382 ~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 382 ALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred ceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 2333 33332344444444444444433
No 114
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=38.40 E-value=2.7e+02 Score=30.27 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=32.1
Q ss_pred CHHHHHHHHhccc-----chhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhC
Q 009772 169 RYVELAQAAFGER-----LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCG 219 (526)
Q Consensus 169 sY~~l~~~~~G~~-----~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~ 219 (526)
+.++..+-.+|++ .|+.++.+.++.+.+|..++.= +....+..-++.+.+
T Consensus 170 ~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLG-lg~~qi~~gl~~l~G 224 (504)
T PRK03356 170 RPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLG-LATPLVTECMQWLFG 224 (504)
T ss_pred cHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcC
Confidence 6677777777732 5788888888888777777643 334444444455543
No 115
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=36.99 E-value=1.6e+02 Score=27.49 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=44.4
Q ss_pred hHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009772 452 LSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKY----------SFNWYFNWILGWLGVAFSLAFSIGGLWSIVN 515 (526)
Q Consensus 452 ~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~----------~~~~~~~~~l~~~g~~~~v~g~~~si~~ii~ 515 (526)
++...=+.|++.+ -+..++|+.+.+..+|++-. +..-....+...+|++.++...+.|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456667788877 88899999999999876322 1222345666777777777777777776655
No 116
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=36.91 E-value=6.5e+02 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=23.1
Q ss_pred ChhHHHHHHHhhhhhhhhch-hHHHHHHhch
Q 009772 105 NAHYAAFHNLNAGVGFQALL-LPVAFAFLGW 134 (526)
Q Consensus 105 s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~ 134 (526)
+..+-.+..++-.+|-|=.= .|+..-+-|-
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGG 69 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGG 69 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 66788888899999998665 8886665554
No 117
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.67 E-value=1.5e+02 Score=26.27 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
.+|.+.+..-..+++..++|+..-..+.|+..- + +++ .-..|+..++.+++.++.+..+..+.+|.
T Consensus 39 ~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~-~---~~~-----SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 39 VQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGI-P---NLY-----SLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-c---ccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 347788888888888888888665566554432 1 221 22568877788888888888877667775
No 118
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=36.19 E-value=5.6e+02 Score=27.29 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHhhhhhhhhch-hHHHHHHhchHHHHHHHHHHHHHHHHH
Q 009772 103 NGNAHYAAFHNLNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYT 151 (526)
Q Consensus 103 ~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~~~~~t 151 (526)
.-|.+++...-+.+-+|+|=++ ..-|.+..|= .+++.+=+.+++-.-|
T Consensus 62 ~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat 110 (452)
T COG1115 62 GVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMAT 110 (452)
T ss_pred CcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHH
Confidence 4678999999999999999765 6777776653 3455544444443333
No 119
>PHA02764 hypothetical protein; Provisional
Probab=35.83 E-value=4.9e+02 Score=26.53 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=40.2
Q ss_pred cCCChhHHHH-HHHhhhhhhhhchhHHHHHHh--ch--HHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHH
Q 009772 102 RNGNAHYAAF-HNLNAGVGFQALLLPVAFAFL--GW--SWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQA 176 (526)
Q Consensus 102 ~~~s~~~a~~-~l~~~~iG~GiL~LP~af~~~--G~--~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~ 176 (526)
|..+.+.+.+ |+.+...|.++ +.|+-++.. |. .++.++..++++....|.-.+.....+..| ...| .++
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGG--dYVY---ISR 85 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGG--DYAY---IRT 85 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc--eEEE---hHH
Confidence 4566777776 77777777765 445422222 22 222222222233333333334333332223 2334 678
Q ss_pred HhcccchhHHHHH
Q 009772 177 AFGERLGVWLALF 189 (526)
Q Consensus 177 ~~G~~~g~~~~~~ 189 (526)
+||+.+|......
T Consensus 86 AFGP~~GFLvG~a 98 (399)
T PHA02764 86 AFSSKFYTIFGIS 98 (399)
T ss_pred hhCccHHHHHHHH
Confidence 8999777765443
No 120
>PLN02810 carbon-monoxide oxygenase
Probab=35.56 E-value=3.7e+02 Score=25.83 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=47.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
.+|.+....-..+++...+|+..-..|.|+.. + .|++ .-+.|+...+-.++.++-+..+-.+.+|.
T Consensus 78 ~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~---i-~nly-----SLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 78 VKKLIHLVLHAIALILGIFGICAAFKNHNESG---I-ANLY-----SLHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---C-Ccee-----eHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34888888888888888888887777766533 2 3332 23568877788888888888887777774
No 121
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=34.80 E-value=1.8e+02 Score=26.13 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=50.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 333 ~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
+++.+|.+.+..-..+++..++|+..-..+.++.+. .|++ +-..|+..++.+++.++.+..+..+.+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~----~~fy-----SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI----PNMY-----SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC----Cccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344457888888888888888888877777665432 2332 23578888888899999999998888885
No 122
>PRK10263 DNA translocase FtsK; Provisional
Probab=34.68 E-value=6.5e+02 Score=30.79 Aligned_cols=21 Identities=10% Similarity=0.089 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 009772 341 KVAYLFIAMCLFPVAIGGFWA 361 (526)
Q Consensus 341 ~~a~~i~~~~Y~~~gi~Gy~~ 361 (526)
....++.+.+|+.++++.|-.
T Consensus 26 ~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 26 LLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHhCCc
Confidence 334456677788888877755
No 123
>PRK12768 CysZ-like protein; Reviewed
Probab=29.70 E-value=4.8e+02 Score=25.26 Aligned_cols=20 Identities=10% Similarity=-0.173 Sum_probs=13.5
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 009772 336 MWRGAKVAYLFIAMCLFPVA 355 (526)
Q Consensus 336 m~~v~~~a~~i~~~~Y~~~g 355 (526)
+++++..+...+..++..+.
T Consensus 17 ~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 17 MRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33777777777777776654
No 124
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=28.79 E-value=8.1e+02 Score=26.88 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 009772 348 AMCLFPVAIGGFWAYGNLM 366 (526)
Q Consensus 348 ~~~Y~~~gi~Gy~~fG~~~ 366 (526)
+.+.+.+|+..|..||..-
T Consensus 536 ~~~w~~~g~~~y~~yg~~~ 554 (557)
T TIGR00906 536 FAIWMAIGFLIYFLYGIRH 554 (557)
T ss_pred HHHHHHHHHHHHhhhhhhc
Confidence 3455788888899888653
No 125
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=27.29 E-value=3.8e+02 Score=22.60 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=40.5
Q ss_pred chhhhhHHHHHHHHHHHHHh---ccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHH
Q 009772 429 WVRSGFRVFYGFVSFFIGVA---LPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLA 504 (526)
Q Consensus 429 ~~r~~~r~~~~~~~~~iA~~---vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~~~~~~~~~l~~~g~~~~v~ 504 (526)
.+++.+.+.+-++-+++|.. -..++.=..+..-++. .+..++=-++++....++..+ ++..-.+++++..++
T Consensus 17 ~k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~----w~~~~~iFt~~i~vi 92 (111)
T COG3125 17 LKSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGR----WNMGALIFTIFIIVI 92 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhcccCCcccc----eehHHHHHHHHHHHH
Confidence 55666666555555555543 2334433333333334 555555444444443222221 244456666666677
Q ss_pred HHHHHHHHH
Q 009772 505 FSIGGLWSI 513 (526)
Q Consensus 505 g~~~si~~i 513 (526)
..++|+|-.
T Consensus 93 vvvGS~Wvm 101 (111)
T COG3125 93 VVVGSIWVM 101 (111)
T ss_pred HHHHHHHHH
Confidence 777777644
No 126
>PLN02351 cytochromes b561 family protein
Probab=27.23 E-value=5.3e+02 Score=25.04 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 337 WRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 337 ~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
+|.+.+..-..+++..++|+.. .|-++. +...|++ .-+.|+...+-.++.++.+..+-.+.+|.
T Consensus 83 ~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~---~~i~nly-----SLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~ 146 (242)
T PLN02351 83 KKSVHLWLQGLALASGVFGIWT--KFHGQD---GIVANFY-----SLHSWMGLICVSLFGAQWLTGFMSFWHRG 146 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhccc---CCccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4778887777777777777766 454321 3334443 22568877778888888888877766664
No 127
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=25.83 E-value=3.2e+02 Score=26.36 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 331 PAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 331 p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
+.+++.+|.+....=++++...++|+..-..+-+...- .|++ +-+.|+...+-+++.++-+..|-.+.+|.
T Consensus 82 ~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i----~Nfy-----SLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 82 YTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI----ANFY-----SLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccee-----eHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555668899888888999999999888888776552 2332 23578877788888888888887777764
No 128
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.66 E-value=5.3e+02 Score=23.76 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=47.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 335 ~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
..+|.+....-..+++..++|+..-..|.|+.. + .|++ .-..|+...+-.++.++.+..+..+.+|.
T Consensus 68 ~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~---~-~nly-----SlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 68 LPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHH---T-ANLY-----SLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---c-cchh-----hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344788888888888888888887777766543 2 2331 22568877778888888888887776664
No 129
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=25.53 E-value=3.9e+02 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=11.3
Q ss_pred chhhhHhhHHHHHhhCCCCcchhHH
Q 009772 465 PVTFAYPCFMWVLIKKPTKYSFNWY 489 (526)
Q Consensus 465 ~l~filP~l~~lk~~~~~~~~~~~~ 489 (526)
.+...+|.+.....|-.+..+..|+
T Consensus 55 ~l~~~i~~lal~vRRlhD~G~sg~~ 79 (120)
T PF05656_consen 55 ILLLFIPSLALTVRRLHDIGRSGWW 79 (120)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCch
Confidence 4555556654433333344433444
No 130
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.52 E-value=2.7e+02 Score=26.52 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhH
Q 009772 337 WRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPV 410 (526)
Q Consensus 337 ~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~ 410 (526)
+|.+....-..+++..++|+..-..+-|+.++ ++ .|++ .-..|+...+.+++.++.+..+..+.+|.
T Consensus 57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~-~~-~hfy-----SlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKP-PI-PNMY-----SLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC-Cccc-----chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37788888888888888887766666665542 33 3332 33568877788888888888887766674
No 131
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=25.21 E-value=6.1e+02 Score=26.28 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhhchhhhHhhHH
Q 009772 430 VRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFM 474 (526)
Q Consensus 430 ~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~~l~filP~l~ 474 (526)
+.++.-.+...+..++++++|.+...++..=-....+.++-|...
T Consensus 148 ~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~LAPf~i 192 (367)
T PF09971_consen 148 IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIFLAPFFI 192 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHHHHHHHH
Confidence 344443444445556667799998777765544335555555543
No 132
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=24.80 E-value=9e+02 Score=26.11 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=49.2
Q ss_pred CHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHH--HHhhhcC
Q 009772 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL--CIVLSQL 246 (526)
Q Consensus 169 sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v--~~~L~~l 246 (526)
-|+-++++.-|+ .|++++.+.++...+|..++ +-+....+..-++...+- +.+...++++..++ +..++-.
T Consensus 163 l~pl~g~~~~g~-~g~~ID~l~i~a~~~Gvats-lGlg~~qi~~gl~~~~Gi-----~~~~~~~~~ii~~~~~i~~~S~~ 235 (485)
T PF02028_consen 163 LYPLLGDRINGP-LGKIIDILAIFATIFGVATS-LGLGVPQISAGLSSLFGI-----PNTFGLQIIIIIVITVIFTISAV 235 (485)
T ss_dssp CHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCTS-----SSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCcccCc-chhhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHcCC-----CCchHHHHHHHHHHHHHHHHHHH
Confidence 366677776666 69998888888776665555 334445555555555441 22233333333222 2334545
Q ss_pred CCcch-hhHhHHHHHHHHHH
Q 009772 247 PNLNS-IAGLSLIGAITAVT 265 (526)
Q Consensus 247 ~~l~~-l~~~S~~~~~~~~~ 265 (526)
..+++ ++++|-+.+...+.
T Consensus 236 ~Gl~kGIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 236 SGLDKGIKRLSNINVYLAFA 255 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 55543 66666655544443
No 133
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=24.26 E-value=2.7e+02 Score=22.32 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=35.2
Q ss_pred HHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009772 302 NALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMP 367 (526)
Q Consensus 302 ~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~ 367 (526)
...|++..+-.|.....+..++- .+|.+.. ||++.+-- ++..+-+++|++.|-.||--.+
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSii~-FIlG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSVTC-FIVGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence 34566666666665556666554 3566654 56655432 2333446778999999984333
No 134
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=23.53 E-value=7.2e+02 Score=24.53 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=20.9
Q ss_pred chhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhhchhhhHhhHHHHHhhCCC
Q 009772 429 WVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPT 482 (526)
Q Consensus 429 ~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~~l~filP~l~~lk~~~~~ 482 (526)
|+..+.-.++-...+..-+..+..+.-.++.=+=.+.+.=.+=.++++|-+|.+
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ 249 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTK 249 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCch
Confidence 334433333333333332334444444443222222233333355566655433
No 135
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=23.21 E-value=9.2e+02 Score=25.61 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=33.1
Q ss_pred cCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHH
Q 009772 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ 215 (526)
Q Consensus 168 ~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~ 215 (526)
..+.++.+.++|.+++..+..+......+++..+++...+..+..+-+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 336 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSR 336 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888855555445555555577788888777777766544
No 136
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.59 E-value=1e+03 Score=26.02 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=28.1
Q ss_pred cCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHH
Q 009772 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMF 213 (526)
Q Consensus 168 ~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~ 213 (526)
....++-..+.|||....+ ...++...+..+++-++-.+.....+
T Consensus 325 ~p~~~i~~~~lg~k~~v~~-~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFL-LSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred ChHHHHHHHhcCCCceEeh-hHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 4678888899999855333 33444444666666666665555443
No 137
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=22.27 E-value=3.7e+02 Score=29.05 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=42.0
Q ss_pred hHHHHHHhhhhhHHHHHHHHhCCC-CCCCCCCcchhhHHHHHHHHhhhcCCCcchhhHhHHHHHH
Q 009772 198 TATTLILLGGETMKMFFQIVCGPL-CSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI 261 (526)
Q Consensus 198 ~~v~yii~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ii~~~v~~~L~~l~~l~~l~~~S~~~~~ 261 (526)
.+..+++...|.....+...+.+. .++....+..|.++.+++.+.+.....++.++-++.++.+
T Consensus 401 l~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 401 LIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677788888888877776542 1112233456777777766666666778888888777654
No 138
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.08 E-value=4.1e+02 Score=22.18 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009772 431 RSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGG 509 (526)
Q Consensus 431 r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~~~~~~~~~~~~~~l~~~g~~~~v~g~~~s 509 (526)
|.++.-..+..+++++-.+|.=+ +-|-++. |..++. .+++....++++...+..........+.+++++.++..
T Consensus 4 rF~~GG~av~~~~ii~~~~~~k~----~GGifAA~PaV~la-sl~~~~~~~~~~~a~~~s~Ga~~G~~~~i~~~l~~~~~ 78 (108)
T PF11345_consen 4 RFLLGGLAVVAAYIISRKLPPKS----FGGIFAAFPAVFLA-SLLILGIQHGGKQAAHFSRGAVFGMIGTIICVLVVWFL 78 (108)
T ss_pred eeeeccHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHH-HHHHHHHhcchhhHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 44444455666777776665211 1222234 544444 56676665554443333334445555555555554444
Q ss_pred HH
Q 009772 510 LW 511 (526)
Q Consensus 510 i~ 511 (526)
++
T Consensus 79 l~ 80 (108)
T PF11345_consen 79 LK 80 (108)
T ss_pred HH
Confidence 43
No 139
>PF04193 PQ-loop: PQ loop repeat
Probab=21.76 E-value=1.8e+02 Score=21.03 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=18.0
Q ss_pred HHHHHHHHhhccccchHHHHhhC
Q 009772 302 NALGIIAFAFRGHNLAMEIQATM 324 (526)
Q Consensus 302 ~a~gii~faf~~h~~i~~I~~~m 324 (526)
..+|.+.....+-.-+|++++..
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~ 25 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNY 25 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 35666666777778899999999
No 140
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.99 E-value=7.2e+02 Score=26.77 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHH
Q 009772 170 YVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMF 213 (526)
Q Consensus 170 Y~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~ 213 (526)
-.|.+++.+|. +. +..-+.+...++|..-+-+...+..+...
T Consensus 275 av~Fa~~~~G~-~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ 316 (479)
T KOG1287|consen 275 AVTFADRILGV-FA-WAIPFSVALSLIGSLNSVIFSSSRLFYAG 316 (479)
T ss_pred HHHHHHHhccc-hH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 45568888888 45 55577777777888777666555555443
No 141
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.49 E-value=1.5e+02 Score=25.46 Aligned_cols=24 Identities=17% Similarity=-0.136 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009772 492 WILGWLGVAFSLAFSIGGLWSIVN 515 (526)
Q Consensus 492 ~~l~~~g~~~~v~g~~~si~~ii~ 515 (526)
++.|++|++++++|++.-|.-.+.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555544444
No 142
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.05 E-value=2.3e+02 Score=24.11 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhhhhhhhchhHHHHHHhc----hHHHHHHHH---HHHHHHHHHHHHHHHchhhcCCccccCHHHH
Q 009772 106 AHYAAFHNLNAGVGFQALLLPVAFAFLG----WSWGILSLT---IAYCWQLYTLWILVQLHEAVPGKRYNRYVEL 173 (526)
Q Consensus 106 ~~~a~~~l~~~~iG~GiL~LP~af~~~G----~~~giill~---~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l 173 (526)
|..-++-+.-.++|+..+.+........ ---+..+++ ++.+=-.|-..++..+.. |.+-.+|.+|
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~r---g~~Gysf~~I 112 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWR---GYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHc---CCCCCCHhhC
Confidence 4444445555556666666654443221 111111111 122223566666666644 4445677765
Done!