BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009773
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 275/536 (51%), Gaps = 45/536 (8%)
Query: 1 MDVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQAS 60
+D+LK GG+AVDA+VA L V P + +GGG FMLIR +G A+D RE APA+A+
Sbjct: 39 VDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAKAT 98
Query: 61 ENMY---GGNATLKRS--GILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFE 115
+M+ GN K+S L+ PG +AG A +++G +P ++V+PA LAR GF
Sbjct: 99 RDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFI 158
Query: 116 VSPYLHMQMQSTKSGILAD-EGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLKAF 174
V+ L +++ S +L + E + +F G+ L+ GD LA++L I++ G F
Sbjct: 159 VNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEF 218
Query: 175 YNGSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMML 234
Y G++ + +++QK GG++T +DL Y+ R PI+ + G ++ MPPPSSGG ++
Sbjct: 219 YKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQ 278
Query: 235 VLNILAQYEVPS-GLSGSLGIHRQIEALKHGFAVRMN-LGDPEYVNVSEVVSDMLSPKFA 292
+LNIL +++ G + + EA K+ +A R LGDP++V V + + +A
Sbjct: 279 ILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQA--LTNKAYA 336
Query: 293 RTLKKTIYDNMTFDPRHY-GGRWNQIHDHGTSHLSIVDHERNAVSMTTTVNAYFGAQILS 351
+++ I N G+ + +H S+VD + NAV++T T+N FG I++
Sbjct: 337 KSIADQIDINKAKPSSEIRPGKLAPYESNQATHYSVVDKDGNAVAVTYTLNTTFGTGIVA 396
Query: 352 PSTGIVLNNEMDDFSMPMNGSKNLPPPAP---------ANFIRPGKRPLSSMTPTIVLKD 402
+GI+LNN+MDDFS P P AN + P KRPLSSM+PTIV+KD
Sbjct: 397 GESGILLNNQMDDFSA--------KPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVKD 448
Query: 403 EKLIAVLXXXXXXXXXXXXXXVLLNHFVRGMDPLSAVMAPRVYHQLIPNIVYYENWTTVI 462
K V +++N G++ A APR +HQ +P+ + E +
Sbjct: 449 GKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFS-- 506
Query: 463 GDHFEIPGNIRASLRKKGHVLESMAGGTICQFIVQQFESIKENEGVGELVGVSDPR 518
P ++ K V A G+ +V GEL G SDPR
Sbjct: 507 ------PDTLKLLEAKGQKVALKEAMGSTQSIMVGP---------DGELYGASDPR 547
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 168/287 (58%), Gaps = 8/287 (2%)
Query: 1 MDVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQAS 60
+D+LK GG+AVDA+VA L V P + +GGG FMLIR +G A+D RE APA+A+
Sbjct: 39 VDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAKAT 98
Query: 61 ENMY---GGNATLKRS--GILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFE 115
+M+ GN K+S L+ PG +AG A +++G +P ++V+PA LAR GF
Sbjct: 99 RDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFI 158
Query: 116 VSPYLHMQMQSTKSGILAD-EGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLKAF 174
V+ L +++ S +L + E + +F G+ L+ GD LA++L I++ G F
Sbjct: 159 VNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEF 218
Query: 175 YNGSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMML 234
Y G++ + +++QK GG++T +DL Y+ R PI+ + G ++ MPPPSSGG ++
Sbjct: 219 YKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQ 278
Query: 235 VLNILAQYEVPS-GLSGSLGIHRQIEALKHGFAVRMN-LGDPEYVNV 279
+LNIL +++ G + + EA K+ +A R LGDP++V V
Sbjct: 279 ILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKV 325
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 171/305 (56%), Gaps = 10/305 (3%)
Query: 3 VLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQASEN 62
VL+ GG+A+DA+VA L VV PA+ IGGG F +I ++G+ ALD RE AP +A++N
Sbjct: 51 VLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKN 110
Query: 63 MY---GGNAT--LKRSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFEVS 117
M+ GN L G L+ VPG +AG+ +++G +L+ PA LA G+ +S
Sbjct: 111 MFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAIS 170
Query: 118 PYLHMQMQSTKSGILADEGLRDVFTSNGDI-LQLGDLCRNKKLAETLRKISKYGLKAFYN 176
++ + L + F G + Q GDL K LA+TL +I G K FY
Sbjct: 171 QRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQ 230
Query: 177 GSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMMLVL 236
G V + +D++K GGI+T +DL Y VK R+P+ + G K+I M PPSSGG ++ +L
Sbjct: 231 GQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQIL 290
Query: 237 NILAQYEVPS-GLSGSLGIHRQIEALKHGFAVR-MNLGDPEYVNVSEVVSDMLSPKFART 294
N++ ++ + G S IH EA++ +A R + +GD ++V+V V +++ +A+
Sbjct: 291 NVMENADLSALGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVP--VDKLINKAYAKK 348
Query: 295 LKKTI 299
+ TI
Sbjct: 349 IFDTI 353
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 171/305 (56%), Gaps = 10/305 (3%)
Query: 3 VLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQASEN 62
VL+ GG+A+DA+VA L VV PA+ IGGG F +I ++G+ ALD RE AP +A++N
Sbjct: 52 VLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKN 111
Query: 63 MY---GGNAT--LKRSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFEVS 117
M+ GN L G L+ VPG +AG+ +++G +L+ PA LA G+ +S
Sbjct: 112 MFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAIS 171
Query: 118 PYLHMQMQSTKSGILADEGLRDVFTSNGDI-LQLGDLCRNKKLAETLRKISKYGLKAFYN 176
++ + L + F G + Q GDL K LA+TL +I G K FY
Sbjct: 172 QRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQ 231
Query: 177 GSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMMLVL 236
G V + +D++K GGI+T +DL Y VK R+P+ + G K+I M PPSSGG ++ +L
Sbjct: 232 GQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQIL 291
Query: 237 NILAQYEVPS-GLSGSLGIHRQIEALKHGFAVR-MNLGDPEYVNVSEVVSDMLSPKFART 294
N++ ++ + G S IH EA++ +A R + +GD ++V+V V +++ +A+
Sbjct: 292 NVMENADLSALGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVP--VDKLINKAYAKK 349
Query: 295 LKKTI 299
+ TI
Sbjct: 350 IFDTI 354
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 161/287 (56%), Gaps = 8/287 (2%)
Query: 1 MDVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQAS 60
+D+LK GG+AVDA+VA L V P + +GGG F LIR +G A+D RE APA+A+
Sbjct: 39 VDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFXLIRSKNGNTTAIDFREXAPAKAT 98
Query: 61 ENMY---GGNATLKRS--GILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFE 115
+ + GN K+S L+ PG +AG A +++G P ++V+PA LAR GF
Sbjct: 99 RDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTXPLNKVVQPAFKLARDGFI 158
Query: 116 VSPYLHMQMQSTKSGILAD-EGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLKAF 174
V+ L +++ S +L + E + +F G+ L+ GD LA++L I++ G F
Sbjct: 159 VNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEXIAENGPDEF 218
Query: 175 YNGSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMML 234
Y G++ + ++ QK GG++T +DL Y+ R PI+ + G ++ PPPSSGG ++
Sbjct: 219 YKGTIAEQIAQEXQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSXPPPSSGGIHIVQ 278
Query: 235 VLNILAQYEVPS-GLSGSLGIHRQIEALKHGFAVRMN-LGDPEYVNV 279
+LNIL ++ G + EA K+ +A R LGDP++V V
Sbjct: 279 ILNILENFDXKKYGFGSADAXQIXAEAEKYAYADRSEYLGDPDFVKV 325
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 180/351 (51%), Gaps = 28/351 (7%)
Query: 2 DVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQA---LDMRETAPAQ 58
DVLK GG+A+DA+VA L V P SGIGGG FM++ DGK + +D RE APA
Sbjct: 44 DVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVY--DGKTKDTTIIDSRERAPAG 101
Query: 59 ASENMY---GGNA---TLKRSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARG 112
A+ +M+ G A + + + +V VPG L GL +A ++ G ++L+ P+ LA
Sbjct: 102 ATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRSMKQLITPSIKLAEK 161
Query: 113 GFEVSPYLHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLK 172
GF + L + + L+ +DVF NG+ L+ GD K LA+T + I G
Sbjct: 162 GFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTD 220
Query: 173 AFYNGSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATM 232
AFY G L +Q GG +T KDL Y++ + EPI + G ++ PPPSSGG +
Sbjct: 221 AFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGYQIATTPPPSSGGIFL 280
Query: 233 MLVLNI-----LAQYEVPSGLSGSLGIHRQIEALKHGFAVRMNL-GDPEYVNVSEVVSDM 286
+ +L I L+QY+V S L E + +A R + GDPE+VNV + +
Sbjct: 281 LQMLKILDHFNLSQYDVRSWEKYQL----LAETMHLSYADRASYAGDPEFVNVP--LKGL 334
Query: 287 LSPKFARTLKKTI-YDNMTFDPRHYGGRWNQIHDHGTSHLSIVDHERNAVS 336
L P + + ++ I D + P+ G W + G+++ V+ ++ V
Sbjct: 335 LHPDYIKERQQLINLDQVNKKPKA-GDPWK--YQEGSANYKQVEQPKDKVE 382
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 179/351 (50%), Gaps = 28/351 (7%)
Query: 2 DVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQA---LDMRETAPAQ 58
DVLK GG+A+DA+VA L V P SGIGGG FM++ DGK + +D RE APA
Sbjct: 36 DVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVY--DGKTKDTTIIDSRERAPAG 93
Query: 59 ASENMY---GGNA---TLKRSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARG 112
A+ +M+ G A + + + +V VPG L GL +A ++ G ++L+ P+ LA
Sbjct: 94 ATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRSMKQLITPSIKLAEK 153
Query: 113 GFEVSPYLHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLK 172
GF + L + + L+ +DVF NG+ L+ GD K LA+T + I G
Sbjct: 154 GFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTD 212
Query: 173 AFYNGSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATM 232
AFY G L +Q GG +T KDL Y++ + EPI + G ++ PPPSSGG +
Sbjct: 213 AFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGYQIATTPPPSSGGIFL 272
Query: 233 MLVLNI-----LAQYEVPSGLSGSLGIHRQIEALKHGFAVRMNL-GDPEYVNVSEVVSDM 286
+ + I L+QY+V S L E + +A R + GDPE+VNV + +
Sbjct: 273 LQMPKILDHFNLSQYDVRSWEKYQL----LAETMHLSYADRASYAGDPEFVNVP--LKGL 326
Query: 287 LSPKFARTLKKTI-YDNMTFDPRHYGGRWNQIHDHGTSHLSIVDHERNAVS 336
L P + + ++ I D + P+ G W + G+++ V+ ++ V
Sbjct: 327 LHPDYIKERQQLINLDQVNKKPKA-GDPWK--YQEGSANYKQVEQPKDKVE 374
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 142/536 (26%), Positives = 243/536 (45%), Gaps = 54/536 (10%)
Query: 1 MDVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAP---A 57
+D+LKAGG+A+DA++A A L V+ P S+GIG +F L+ + GK L+ AP
Sbjct: 38 LDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALV-WTKGKLHGLNGSGRAPMSLT 96
Query: 58 QASENMYGGNATLKRSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFEVS 117
+ G L G++ V VPG + + +G LP + PA A G+ V+
Sbjct: 97 MEAVKAKGYEQELPPYGVIPVTVPGAPGAWAELAKMYGNLPLAASLAPAIRYAEEGYPVT 156
Query: 118 P----YLHMQMQSTKSGILAD--EGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGL 171
P Y K+ D + D F G ++G++ R++ A+TLR I++
Sbjct: 157 PTLAKYWKAAYDRVKTEWTDDVYQPWFDTFAPKGRAPRVGEVWRSQGHADTLRSIAESNG 216
Query: 172 KAFYNGSVGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGAT 231
++FY G + + K GG LT +DL Y + EPI+ + G ++ + PP+ G
Sbjct: 217 ESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWVEPISIDYRGYRVWEI-PPNGQGLV 275
Query: 232 MMLVLNILAQYEVPSGLSGSLGIHRQIEALKHGFAVRMN-LGDPEYVNVSEVVSDMLSPK 290
+ LNI+ +E + H+QIEA+K F M + +P ++VS V +LS +
Sbjct: 276 ALEALNIVKGFEFYHKDTVDT-YHKQIEAMKLAFVDGMKYVTEPSDMSVS--VEQLLSDE 332
Query: 291 FARTLKKTIYDN-MTFDPRHYGGRWNQIHDHGTSHLSIVDHERNAVSMTTTVNAYFGAQI 349
+A +K I + +T +P GT +L+ D + N VS + FG+ +
Sbjct: 333 YATERRKEIGEQALTPEP-------GTPPRGGTVYLATADGDGNMVSFIQSNYMGFGSGV 385
Query: 350 LSPSTGIVLNNEMDDFSMPMNGSKNLPPPAPANFIRPGKRPLSSMTPTIVLKDEKLIAVL 409
+ P TGI + N +FS+ N N ++PGKR ++ P + K+++ I
Sbjct: 386 VVPGTGIAMQNRGHNFSLDPNHD---------NALKPGKRTYHTIIPGFLTKNDQPIGPF 436
Query: 410 XXXXXXXXXXXXXXVLLNHFVRGMDPLSAVMAPRVYHQLIPNIVYYENWTTVIGDHFEI- 468
V++N G++P +A+ APR W G ++
Sbjct: 437 GVMGGFMQPQGHMQVMMNTIDFGLNPQAALDAPR--------------WQWTNGKQVQVE 482
Query: 469 ---PGNIRASLRKKGHVLESMAGGTICQFIVQQFESIKENEGVGELVGVSDPRKGG 521
P +I +L ++GH ++ + + + + + I + G L G ++PR G
Sbjct: 483 PTFPVDIAQALVRRGHKIQVV----LDEGAFGRGQIIWRDPTTGVLAGGTEPRTDG 534
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 145/296 (48%), Gaps = 25/296 (8%)
Query: 3 VLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQASEN 62
VLK GG AVDA++ + LGVV +SGIGGG LI D K +D RET P
Sbjct: 37 VLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGXLIISKD-KETFIDYRETTP------ 89
Query: 63 MYGGNATLKRSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFEVSPYLHM 122
+ GN + VPG +AG + +G LP L++PA A GF+V L
Sbjct: 90 YFTGNQK------PHIGVPGFVAGXEYIHDNYGSLPXGELLQPAINYAEKGFKVDDSLTX 143
Query: 123 QMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLKAFYNGSVGFN 182
++ K I +D+ +F NG+ ++ G+ LA TL+KI K G K FY G V
Sbjct: 144 RLDLAKPRIYSDK--LSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGFYEGGVA-- 199
Query: 183 LVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMMLVLNILAQY 242
R I K I +++D+ Y+V+VR+P+ N G + PPP S G T++ L + +
Sbjct: 200 --RAISKTAKI-SLEDIKGYKVEVRKPVKGNYXGYDVYTAPPPFS-GVTLLQXLKLAEKK 255
Query: 243 EVPSGLSGSLGIHRQIEALKH-GFAVR-MNLGDPEYVNVSEVVSDMLSPKFARTLK 296
EV + + + E + + R NLGDP YVN + +S K+ T K
Sbjct: 256 EVYKDVDHTATYXSKXEEISRIAYQDRKKNLGDPNYVNXDP--NKXVSDKYISTXK 309
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 123/523 (23%), Positives = 212/523 (40%), Gaps = 43/523 (8%)
Query: 2 DVLKAGGHAVDASVAAALCLGVVSPASSGIGGGSFMLIRQSDGKAQALDMRETAPAQASE 61
D+LK GG+ DA++A + L V G+GG F LIR +G+ L+ A S
Sbjct: 28 DILKRGGNIFDAALAVSAXLCVTQNNLCGLGGDLFALIRDENGQIXDLNGSGQASRAVSI 87
Query: 62 NMYGGNATLK---RSGILSVAVPGGLAGLFKAWEQHGKLPWRRLVRPAEALARGGFEVSP 118
+ Y K R ++ VPG + + + ++ PA A GF ++
Sbjct: 88 DYYESXGLTKIPERGPYAAITVPGIAGSWDEIFRKFATXDIADILEPAIRTASAGFPITQ 147
Query: 119 YLHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRKISKYGLKAFYNGS 178
+ + I G +F NG + G++ + LAE+ R S+ G ++FY+GS
Sbjct: 148 NYSDSIARSAPVIGQYRGWSSIFXPNGSVPVAGEILKQPDLAESFRLXSEEGFRSFYDGS 207
Query: 179 VGFNLVRDIQKAGGILTIKDLLRYEVKVREPITANILGLKLIGMPPPSSGGATMMLVLNI 238
+ ++ ++ G L+ +DL Y + +P+ ++ ++ P+S G T++ +
Sbjct: 208 LADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEFRIYET-SPNSQGITVIEWIRG 266
Query: 239 LAQYEVPSGLSGSLGIHRQIEALKHGFAVRMNLGDPEYVNVSEVVSDMLSPKFARTLKKT 298
+ S I E + + R + DP Y N+++ D + K K+
Sbjct: 267 XESHGYDSRTXWEAKIEDIFETXEEAYDKRRKITDPSYXNIAQ--HDSANGKKDGLPKRD 324
Query: 299 IYDNMTFDPRHYGGRWNQIHDHGTSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVL 358
N I D T++ SI D E +VS+ + FG+ I+ TG VL
Sbjct: 325 ---------------HNDIGD--TTYFSISDSEGRSVSIIQSNYXGFGSGIVPKGTGFVL 367
Query: 359 NNEMDDFSMPMNGSKNLPPPAPANFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXX 418
N F++ ++ P N + PGKR ++ V K+ L A L
Sbjct: 368 QNRGSYFTL----QRDHP-----NALXPGKRTFHTLAACXVEKEHDLYASLGSXGGDIQP 418
Query: 419 XXXXXVLLNHFVRGMDPLSAVMAPRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRK 478
+L DP + + PR P + YE V + E+ N+ +
Sbjct: 419 QVQXQILXEILKDNTDPQAILDKPRWTE---PYTI-YEAPGAVYVESEELYRNVSKQISG 474
Query: 479 KGHVLESMAGGTICQFIVQQFESIKENEGVGELVGVSDPRKGG 521
+ VL ++ +F Q ++ + V VG +DPR G
Sbjct: 475 RKVVLRDVS----QEFGTAQITTLIRGDVV---VGAADPRGDG 510
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 96/206 (46%), Gaps = 34/206 (16%)
Query: 322 TSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAP- 380
T+H S+VD + NAV++T T+N FG I++ +GI+LNN+MDDFS P P
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSA--------KPGVPN 52
Query: 381 --------ANFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRG 432
AN + P KRPLSSM+PTIV+KD K V +++N G
Sbjct: 53 VYGLVGGDANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYG 112
Query: 433 MDPLSAVMAPRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGHVLESMAGGTIC 492
++ A APR +HQ +P+ + E + P ++ K V A G+
Sbjct: 113 LNVAEATNAPRFHHQWLPDELRVEKGFS--------PDTLKLLEAKGQKVALKEAMGSTQ 164
Query: 493 QFIVQQFESIKENEGVGELVGVSDPR 518
+V GEL G SDPR
Sbjct: 165 SIMVGPD---------GELYGASDPR 181
>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 193
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 92/205 (44%), Gaps = 25/205 (12%)
Query: 322 TSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAPA 381
T+H ++ D N VS TTT+ FG I+ P G++LNNE+ DF P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFDAI---------PGGA 51
Query: 382 NFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRGMDPLSAVMA 441
N ++P KRPLSSMTPTI+ KD+K + + +L H GM+ +AV
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 442 PRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGHVLESMAGGTICQFIVQQFES 501
PR+Y + + Y + +P ++ + L GH GT + +S
Sbjct: 112 PRIYTNSMSSYRYEDG----------VPKDVLSKLNGMGHKF-----GT-SPVDIGNVQS 155
Query: 502 IKENEGVGELVGVSDPRKGGFPAGF 526
I + G GV+D + G G
Sbjct: 156 ISIDHENGTFKGVADSSRNGAAIGI 180
>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 185
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 92/205 (44%), Gaps = 25/205 (12%)
Query: 322 TSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAPA 381
T+H ++ D N VS TTT+ FG I+ P G++LNNE+ DF P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFDAI---------PGGA 51
Query: 382 NFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRGMDPLSAVMA 441
N ++P KRPLSSMTPTI+ KD+K + + +L H GM+ +AV
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 442 PRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGHVLESMAGGTICQFIVQQFES 501
PR+Y + + Y + +P ++ + L GH GT + +S
Sbjct: 112 PRIYTNSMSSYRYEDG----------VPKDVLSKLNGMGHKF-----GT-SPVDIGNVQS 155
Query: 502 IKENEGVGELVGVSDPRKGGFPAGF 526
I + G GV+D + G G
Sbjct: 156 ISIDHENGTFKGVADSSRNGAAIGI 180
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 323 SHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAP-- 380
+H S+VD + NAV++T T+N FG I++ +GI+LNN+MDDFS P P
Sbjct: 2 THYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSA--------KPGVPNV 53
Query: 381 -------ANFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRGM 433
AN + P KRPLSSM+PTIV+KD K V +++N G+
Sbjct: 54 YGLVGGDANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGL 113
Query: 434 DPLSAVMAPRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGHVLESMAGGTICQ 493
+ A APR +HQ +P+ + E + P ++ K V A G+
Sbjct: 114 NVAEATNAPRFHHQWLPDELRVEKGFS--------PDTLKLLEAKGQKVALKEAMGSTQS 165
Query: 494 FIVQQFESIKENEGVGELVGVSDPR 518
+V GEL G SDPR
Sbjct: 166 IMVGPD---------GELYGASDPR 181
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 322 TSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSM-PMNGSKNLPPPAP 380
T+H S+ D NAVS+T T+NA +G+ G +LNNEMDDFS+ P N +
Sbjct: 1 TTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGD 60
Query: 381 ANFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRGMDPLSAVM 440
AN I KRPLSSM+PTIVLK+ K+ V+ V+ N M+ AV
Sbjct: 61 ANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVS 120
Query: 441 APRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGH--VLESMAGGTICQFIVQQ 498
APR + Q +P+ + E F +P +++ +L K G+ V + + G V
Sbjct: 121 APRFHMQWLPDELRIE--------KFGMPADVKDNLTKMGYQIVTKPVMGD------VNA 166
Query: 499 FESIKENEGVGELVGVSDPRK 519
+ + + +G G +DPRK
Sbjct: 167 IQVLPKTKG-SVFYGSTDPRK 186
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 323 SHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSM-PMNGSKNLPPPAPA 381
+H S+ D NAVS+T T+NA +G+ G +LNNEMDDFS+ P N + A
Sbjct: 2 THYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDA 61
Query: 382 NFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRGMDPLSAVMA 441
N I KRPLSSM+PTIVLK+ K+ V+ V+ N M+ AV A
Sbjct: 62 NAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSA 121
Query: 442 PRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGH--VLESMAGGTICQFIVQQF 499
PR + Q +P+ + E F +P +++ +L K G+ V + + G V
Sbjct: 122 PRFHMQWLPDELRIE--------KFGMPADVKDNLTKMGYQIVTKPVMGD------VNAI 167
Query: 500 ESIKENEGVGELVGVSDPRK 519
+ + + +G G +DPRK
Sbjct: 168 QVLPKTKG-SVFYGSTDPRK 186
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 92/206 (44%), Gaps = 34/206 (16%)
Query: 322 TSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAP- 380
T+H S+VD + NAV++T T+N FG I++ +GI+LNN+ DDFS P P
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQXDDFSA--------KPGVPN 52
Query: 381 --------ANFIRPGKRPLSSMTPTIVLKDEKLIAVLXXXXXXXXXXXXXXVLLNHFVRG 432
AN + P KRPLSS +PTIV+KD K V ++N G
Sbjct: 53 VYGLVGGDANAVGPNKRPLSSXSPTIVVKDGKTWLVTGSPGGSRIITTVLQXVVNSIDYG 112
Query: 433 MDPLSAVMAPRVYHQLIPNIVYYENWTTVIGDHFEIPGNIRASLRKKGHVLESMAGGTIC 492
++ A APR +HQ +P+ + E + P ++ K V A G+
Sbjct: 113 LNVAEATNAPRFHHQWLPDELRVEKGFS--------PDTLKLLEAKGQKVALKEAXGSTQ 164
Query: 493 QFIVQQFESIKENEGVGELVGVSDPR 518
V GEL G SDPR
Sbjct: 165 SIXVGPD---------GELYGASDPR 181
>pdb|3G9K|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|F Chain F, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 177
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 322 TSHLSIVDHERNAVSMTTTVNAYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAPA 381
T+H I+D + VS T T++ +FG + G LNN++ +F GS+
Sbjct: 1 TTHFVIIDRDGTVVSSTNTLSNFFGTGKYTA--GFFLNNQLQNF-----GSEGF------ 47
Query: 382 NFIRPGKRPLSSMTPTIVLKDEKLIAV 408
N PGKR + PT++ KD + I +
Sbjct: 48 NSYEPGKRSRTFXAPTVLKKDGETIGI 74
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 120 LHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRK 165
+H++M G E +R VF G +L L + RN ETLRK
Sbjct: 248 IHLEMLKEWDGFKKGEVVR-VFNEEGRLLALAEAERNSSFLETLRK 292
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 120 LHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRK 165
+H++M G E +R VF G +L L + RN ETLRK
Sbjct: 248 IHLEMLKEWDGFKKGEVVR-VFNEEGRLLALAEAERNSSFLETLRK 292
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 120 LHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRK 165
+H++M G E +R VF G +L L + RN ETLRK
Sbjct: 248 IHLEMLKEWDGFKKGEVVR-VFNEEGRLLALAEAERNSSFLETLRK 292
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 120 LHMQMQSTKSGILADEGLRDVFTSNGDILQLGDLCRNKKLAETLRK 165
+H++M G E +R VF G +L L + RN ETLRK
Sbjct: 248 IHLEMLKEWDGFKKGEVVR-VFNEEGRLLALAEAERNSSFLETLRK 292
>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
pdb|2CDQ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
Length = 510
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 343 AYFGAQILSPSTGIVLNNEMDDFSMPMNGSKNLPPPAPANFIRPGKRPLSSMTPTIVLK 401
AYFGAQ+L P + + +P+ + P AP I + S+ +IVLK
Sbjct: 284 AYFGAQVLHPQS----MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLK 338
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 285 DMLSPKFARTLKKTIYDNMTFDPRHYGGRWNQIHDHGTSHLSI 327
D PKF L YD + GRW+QI H S+
Sbjct: 62 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 285 DMLSPKFARTLKKTIYDNMTFDPRHYGGRWNQIHDHGTSHLSI 327
D PKF L YD + GRW+QI H S+
Sbjct: 60 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 285 DMLSPKFARTLKKTIYDNMTFDPRHYGGRWNQIHDHGTSHLSI 327
D PKF L YD + GRW+QI H S+
Sbjct: 60 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 285 DMLSPKFARTLKKTIYDNMTFDPRHYGGRWNQIHDHGTSHLSI 327
D PKF L YD + GRW+QI H S+
Sbjct: 60 DWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV 102
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 IRQSDGKAQALDMRETAPAQASENMYGGNATLKRSGI 75
++ DG AQ D RE AP AS N+ G ++ SGI
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINL-GVTLCIQCSGI 74
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of
Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of
Acap1
Length = 368
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 IRQSDGKAQALDMRETAPAQASENMYGGNATLKRSGI 75
++ DG AQ D RE AP AS N+ G ++ SGI
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINL-GVTLCIQCSGI 74
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 IRQSDGKAQALDMRETAPAQASENMYGGNATLKRSGI 75
++ DG AQ D RE AP AS N+ G ++ SGI
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINL-GVTLCIQCSGI 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,976,156
Number of Sequences: 62578
Number of extensions: 667183
Number of successful extensions: 1455
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 38
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)