BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009774
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YNS|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1 And Its
Complex With A Substrate Analog
Length = 261
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 160/246 (65%), Gaps = 9/246 (3%)
Query: 287 IVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVA 346
I+LDIEGTTTPI+FV ++LFPY +NV ++L ++ E Q D+ LLR Q E+D +
Sbjct: 13 ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LD 70
Query: 347 GAVPIPPGDAGK----EEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGE 402
GAVPIP +++I A+V NV + DRK TALKQLQGH+WR F + ++ E
Sbjct: 71 GAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAE 130
Query: 403 VFDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRET 462
F DV A+ KW G KVYIYSSGS AQ+L+FG+S GD+ + + G FDT +G+K E+
Sbjct: 131 FFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVES 190
Query: 463 PSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHG--FKTI 520
SY +I +S+G + ILF+TDV +EA+AA+ A + V + +RPGN L ++ + I
Sbjct: 191 ESYRKIADSIGC-STNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLI 249
Query: 521 NSFAEI 526
SF+E+
Sbjct: 250 TSFSEL 255
>pdb|1ZS9|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1
Length = 261
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 9/246 (3%)
Query: 287 IVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVA 346
I+LDIEGTTTPI+FV ++LFPY +NV ++L ++ E Q D+ LLR Q E+D +
Sbjct: 13 ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LD 70
Query: 347 GAVPIPPGDAGK----EEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGE 402
GAVPIP ++ I A+V NV DRK TALKQLQGH WR F + + E
Sbjct: 71 GAVPIPAASGNGVDDLQQXIQAVVDNVCWQXSLDRKTTALKQLQGHXWRAAFTAGRXKAE 130
Query: 403 VFDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRET 462
F DV A+ KW G KVYIYSSGS AQ+L+FG+S GD+ + + G FDT +G+K E+
Sbjct: 131 FFADVVPAVRKWREAGXKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVES 190
Query: 463 PSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHG--FKTI 520
SY +I +S+G + ILF+TDV +EA+AA+ A + V + +RPGN L ++ + I
Sbjct: 191 ESYRKIADSIGC-STNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLI 249
Query: 521 NSFAEI 526
SF+E+
Sbjct: 250 TSFSEL 255
>pdb|2G80|A Chain A, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|B Chain B, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|C Chain C, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|D Chain D, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
Length = 253
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 38/245 (15%)
Query: 288 VLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVAG 347
+LDIEGT PISFV E LFPY + V + V DT ++ + + SQ D K+
Sbjct: 35 LLDIEGTVCPISFVKETLFPYFTNKVPQL--VQQDTRDSP--VSNILSQFHIDNKE---- 86
Query: 348 AVPIPPGDAGKEEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDV 407
L A++ ++ D K LKQLQG++W G+ES +++ V+ D
Sbjct: 87 ----------------QLQAHILELVAKDVKDPILKQLQGYVWAHGYESGQIKAPVYADA 130
Query: 408 PEALEKWHSLGTKVYIYSSGSRLAQRLIFG--------NSNYGDLRKYLSGFFD-TAVGN 458
+ +++ +V+IYSSGS AQ+L+FG + DL Y+ G+FD G
Sbjct: 131 IDFIKR----KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGK 186
Query: 459 KRETPSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHGFK 518
K ET SY I +G K SE+LF++D E AA G+ ++ RPGN P+P+ ++
Sbjct: 187 KTETQSYANILRDIGA-KASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQ 245
Query: 519 TINSF 523
+F
Sbjct: 246 VYKNF 250
>pdb|2IRP|A Chain A, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
pdb|2IRP|B Chain B, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
Length = 208
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 28/210 (13%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I E R ++ GWV T G+I+ KV ++ I ++ SG K ++ PED+ ++
Sbjct: 16 IIEAGRILHSRGWVPATSGNISAKV-------SEEYIAITASGKHKGKLTPEDILLIDYE 68
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEF- 152
G + P + AV+H+H + +++++ K+F
Sbjct: 69 GRPVGGGKPSAETLLHTTVYKLFP---------EVNAVVHTHSPNATVISIVE--KKDFV 117
Query: 153 RITHMEMIKGIKG-HGYYDELVVPIIENTAYENELTDSLAKAIDAYPKAT----AVLVRN 207
+ E++K H + ++ +PI N + LAK ++ Y K + L+R
Sbjct: 118 ELEDYELLKAFPDIHTHEVKIKIPIFPN----EQNIPLLAKEVENYFKTSEDKYGFLIRG 173
Query: 208 HGIYVWGDSWINAKTQAECYHYLFDAAIKL 237
HG+Y WG S A E ++F+ +KL
Sbjct: 174 HGLYTWGRSXEEALIHTEALEFIFECELKL 203
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73s
Length = 215
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSSWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73q
Length = 215
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSQWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73qY113FY209F
Length = 215
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSQWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant F131a
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113f
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113fY209F
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T
pdb|2FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T With Cobalt
pdb|3FUA|A Chain A, L-Fuculose-1-Phosphate Aldolase Crystal Form K
pdb|4FUA|A Chain A, L-fuculose-1-phosphate Aldolase Complex With Pgh
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZY|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant E214a
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant R212a
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29q
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G ++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGQVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant S71q
Length = 215
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GKHEEGKLPQSEWR----------FHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 404 FDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRETP 463
F DVP+AL++ + G K I S+GSR + R + GNS + +L D K
Sbjct: 98 FADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLIS-VDEVRLFKPHQK 156
Query: 464 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEV 500
Y ++L + + SEILFV+ +AT AK G V
Sbjct: 157 VYELAMDTLHLGE-SEILFVSCNSWDATGAKYFGYPV 192
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant T26a
Length = 215
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG G G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGAAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29lS71A
Length = 215
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G ++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGLVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GKHEEGKLPASEWR----------FHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|2FK5|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FK5|B Chain B, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|A Chain A, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|B Chain B, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|C Chain C, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|D Chain D, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|E Chain E, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|F Chain F, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|G Chain G, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|H Chain H, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
Length = 200
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 41 FYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXX 100
+ G +S T G+ +++ L++ SGVQK R+ PED+ + G
Sbjct: 16 LFAQGLISATAGNFSVRTKGG--------FLITKSGVQKARLTPEDLLEVPLEGPI---- 63
Query: 101 XXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMI 160
S + + + Y + A A++H+H + ++ F ++ + +
Sbjct: 64 --------PEGASVESVVHREVYRRTGARALVHAHPRVAVALS--------FHLSRLRPL 107
Query: 161 KGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINA 220
++G Y E+ V + + E S+A+A+ + A L+R HG + G
Sbjct: 108 D-LEGQHYLKEVPVLAPKTVSATEEAALSVAEALREH---RACLLRGHGAFAVGLKEAPE 163
Query: 221 KTQAECY 227
+ E Y
Sbjct: 164 EALLEAY 170
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant Del(27)
Length = 214
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GTG +++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTG-NVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 60
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 61 G----------KHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 104
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 404 FDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRETP 463
F +VP++L + G K+ I S+GS + + ++ D +L D K +
Sbjct: 97 FSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLS-VDPVQVYKPDNR 155
Query: 464 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGN 508
Y +LG+D+ S ILFV+ +AT A+ G R GN
Sbjct: 156 VYELAEQALGLDR-SAILFVSSNAWDATGARYFGFPTCWINRTGN 199
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 408 PEALEKWHSLGTKVYIYS---SGSRLAQRLIFGNSNYGDLRKYLSGFF-DTAVGNKRETP 463
PE L LG + YS G L + I +G L ++L FF +A+G + P
Sbjct: 89 PEVLALARDLGQRYRXYSLNNEGRDLNEYRI---RTFG-LGEFLLAFFTSSALGVXKPNP 144
Query: 464 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISI 504
+ + +L +P E + V D Q AA+A G V +
Sbjct: 145 AXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAVQCV 185
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 404 FDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRETP 463
F +VP++L + G K+ I S+GS + + ++ D +L D K +
Sbjct: 97 FSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLS-VDPVQVYKPDNR 155
Query: 464 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGN 508
Y +LG+D+ S ILFV +AT A+ G R GN
Sbjct: 156 VYELAEQALGLDR-SAILFVASNAWDATGARYFGFPTCWINRTGN 199
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMSGNAVMY 389
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 394 FESNELEG----EVFDDVPEALEKWHSLGTKVYIYSSGSRL 430
FE+++L G + DD+ EA +K H+LG + + + G +L
Sbjct: 143 FEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVITGGGKL 183
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 337 AKVNPMLTADKQ--GLYKSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 390
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 391 GKRQSNRGVAPDAMCGNAVMY 411
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 367 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 426
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 332 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 385
Query: 427 GSRLAQRLIFGNSNYGDLRKY 447
G R + R + ++ G+ Y
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMY 406
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 400 EGEVFDDVPEALEKWHSLGTKVYIYSSGS-RLAQRLIFGNSNYGDLRKYLSGFFDTAVGN 458
E + D E LEK S G V I S+G+ + Q + + L LS D
Sbjct: 103 ELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSA--DDLKIY 160
Query: 459 KRETPSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHGFK 518
K + Y + LGV+ P+E+ FV+ + A G V R GN P E K
Sbjct: 161 KPDPRIYQFACDRLGVN-PNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLK 219
Query: 519 -TINSFAEI 526
+NS +E+
Sbjct: 220 HQVNSLSEL 228
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 400 EGEVFDDVPEALEKWHSLGTKVYIYSSGS-RLAQRLIFGNSNYGDLRKYLSGFFDTAVGN 458
E + D E LEK S G V I S+G+ + Q + + L LS D
Sbjct: 103 ELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSA--DDLKIY 160
Query: 459 KRETPSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHGFK 518
K + Y + LGV+ P+E+ FV+ + A G V R GN P E K
Sbjct: 161 KPDPRIYQFACDRLGVN-PNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLK 219
Query: 519 -TINSFAEI 526
+NS +E+
Sbjct: 220 HQVNSLSEL 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,812,111
Number of Sequences: 62578
Number of extensions: 673826
Number of successful extensions: 1836
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 38
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)