BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009775
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
 pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
 pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
          Length = 675

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 14/84 (16%)

Query: 17  GSADARASSQDLG--YDPNFVPDSVKSFVVHLYRHIREKNVYEI---------HQMYETS 65
           G+ +  A+ Q+LG  YD  FVP+ VKS   H  RH  E    E           + Y   
Sbjct: 280 GAKEVEATRQNLGWPYDTFFVPEDVKS---HWSRHTPEGAALEADWNAKFAEYEKKYADD 336

Query: 66  FQSLSDRLFKDTPWPSVDAVAHYV 89
             +L   +  + P   VDA+  Y 
Sbjct: 337 AATLKSIITGELPTGWVDALPKYT 360


>pdb|3GAA|A Chain A, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|B Chain B, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|C Chain C, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|D Chain D, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|E Chain E, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
          Length = 252

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 239 SMVGLLRVHCLLGDYHTGLKCLQP--IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYV 296
            M G +   CL+    TGL  + P  +DI   G   S+I   I   Y+      +L   V
Sbjct: 166 GMGGGILNECLVRKI-TGLSFITPTSVDIPDPGAVLSII-EAINKAYNLKIKTDLLEEQV 223

Query: 297 DAIREFNKILLYIYKTKQYHQKSPQ 321
            A+ E  K +   YK  Q  QK PQ
Sbjct: 224 KALDEQIKKIEEQYKELQEKQKEPQ 248


>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
 pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
 pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
           Rotavirus Particles
 pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
           Rotavirus Particles
          Length = 880

 Score = 28.5 bits (62), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 298 AIREFNKILLYIYKTKQYHQKSPQYEQILKK 328
           + +E +K LL + KTK+ HQK  QYE IL+K
Sbjct: 64  STKEESKQLLEVLKTKEEHQKEIQYE-ILQK 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,030,038
Number of Sequences: 62578
Number of extensions: 690554
Number of successful extensions: 1867
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 23
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)