Query 009775
Match_columns 526
No_of_seqs 118 out of 126
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10255 Paf67: RNA polymerase 100.0 2E-158 4E-163 1238.8 37.8 391 116-514 1-404 (404)
2 KOG3677 RNA polymerase I-assoc 100.0 9E-150 2E-154 1154.5 33.6 475 35-523 31-522 (525)
3 KOG3677 RNA polymerase I-assoc 96.9 0.012 2.7E-07 63.5 13.2 228 38-310 96-337 (525)
4 PF12895 Apc3: Anaphase-promot 95.8 0.011 2.3E-07 48.8 4.0 56 240-304 28-83 (84)
5 PF13371 TPR_9: Tetratricopept 95.6 0.018 3.9E-07 45.6 4.3 56 243-307 1-57 (73)
6 PF13414 TPR_11: TPR repeat; P 95.5 0.021 4.6E-07 44.8 4.4 57 242-307 8-66 (69)
7 PF13424 TPR_12: Tetratricopep 94.1 0.045 9.8E-07 44.0 3.0 66 240-307 8-74 (78)
8 PF07719 TPR_2: Tetratricopept 93.9 0.088 1.9E-06 35.7 3.7 27 281-307 3-29 (34)
9 PF00515 TPR_1: Tetratricopept 92.7 0.17 3.7E-06 34.6 3.7 28 280-307 2-29 (34)
10 PF13432 TPR_16: Tetratricopep 92.5 0.19 4.1E-06 39.0 4.1 56 243-306 3-58 (65)
11 cd00189 TPR Tetratricopeptide 92.3 0.68 1.5E-05 34.8 6.9 58 241-307 4-62 (100)
12 PRK15363 pathogenicity island 92.3 0.66 1.4E-05 44.4 8.2 80 241-336 73-153 (157)
13 PRK15331 chaperone protein Sic 91.4 0.63 1.4E-05 44.9 7.0 76 240-337 74-152 (165)
14 TIGR02552 LcrH_SycD type III s 90.2 0.49 1.1E-05 41.3 4.8 57 242-307 56-113 (135)
15 PRK15359 type III secretion sy 89.9 0.52 1.1E-05 43.2 4.9 59 241-307 62-120 (144)
16 cd00189 TPR Tetratricopeptide 89.7 1 2.2E-05 33.9 5.6 59 239-306 36-95 (100)
17 PLN03088 SGT1, suppressor of 89.4 0.49 1.1E-05 50.0 4.9 59 240-307 39-98 (356)
18 smart00088 PINT motif in prote 89.4 2.2 4.8E-05 35.5 7.9 65 419-496 4-70 (88)
19 smart00753 PAM PCI/PINT associ 89.4 2.2 4.8E-05 35.5 7.9 65 419-496 4-70 (88)
20 TIGR02552 LcrH_SycD type III s 88.6 2.2 4.8E-05 37.2 7.8 60 239-307 19-79 (135)
21 PF01399 PCI: PCI domain; Int 87.4 2.2 4.8E-05 35.8 6.8 97 363-493 5-103 (105)
22 PF09976 TPR_21: Tetratricopep 87.3 3.6 7.9E-05 37.3 8.5 106 178-305 38-144 (145)
23 PF14559 TPR_19: Tetratricopep 87.0 0.34 7.3E-06 37.7 1.4 50 249-307 3-53 (68)
24 KOG0687 26S proteasome regulat 86.2 11 0.00023 40.6 12.2 89 413-518 295-392 (393)
25 PF13174 TPR_6: Tetratricopept 85.5 1.4 3.1E-05 29.3 3.8 27 281-307 2-28 (33)
26 smart00028 TPR Tetratricopepti 84.2 2 4.4E-05 26.2 3.9 28 280-307 2-29 (34)
27 PF13414 TPR_11: TPR repeat; P 82.0 3.3 7.2E-05 32.2 5.1 28 281-308 5-32 (69)
28 PRK10370 formate-dependent nit 81.1 1.8 3.9E-05 42.0 3.9 66 242-307 78-172 (198)
29 PRK11189 lipoprotein NlpI; Pro 79.7 2.8 6E-05 42.9 4.9 60 239-307 100-160 (296)
30 TIGR02521 type_IV_pilW type IV 79.2 3.9 8.4E-05 37.2 5.3 60 239-307 67-127 (234)
31 PRK15359 type III secretion sy 79.1 4.2 9E-05 37.2 5.5 56 243-307 30-86 (144)
32 PF13424 TPR_12: Tetratricopep 77.2 3.3 7.1E-05 33.1 3.7 30 279-308 5-34 (78)
33 TIGR02795 tol_pal_ybgF tol-pal 77.0 5 0.00011 33.4 5.0 61 241-307 43-104 (119)
34 PRK02603 photosystem I assembl 76.6 15 0.00032 34.2 8.5 61 241-307 39-100 (172)
35 PRK09110 flagellar motor prote 75.8 3.6 7.9E-05 42.8 4.5 105 214-358 162-266 (283)
36 PF12895 Apc3: Anaphase-promot 74.3 2.4 5.1E-05 34.7 2.2 48 250-304 2-50 (84)
37 CHL00033 ycf3 photosystem I as 73.4 39 0.00084 31.1 10.3 63 239-307 37-100 (168)
38 PRK08307 stage III sporulation 72.1 12 0.00027 35.9 6.8 148 276-449 5-165 (171)
39 PRK10803 tol-pal system protei 71.6 4.6 9.9E-05 41.3 4.0 64 235-307 144-208 (263)
40 COG5187 RPN7 26S proteasome re 71.1 67 0.0015 34.4 12.2 92 409-517 305-405 (412)
41 PLN03098 LPA1 LOW PSII ACCUMUL 70.6 6.6 0.00014 43.5 5.1 56 246-307 84-140 (453)
42 TIGR02521 type_IV_pilW type IV 70.1 12 0.00027 33.8 6.2 61 241-307 103-163 (234)
43 TIGR02833 spore_III_AB stage I 70.0 18 0.00039 34.8 7.4 143 281-449 9-164 (170)
44 TIGR02795 tol_pal_ybgF tol-pal 69.8 9.2 0.0002 31.8 4.9 60 242-307 7-67 (119)
45 TIGR00990 3a0801s09 mitochondr 69.4 6.2 0.00013 44.2 4.8 58 241-307 369-427 (615)
46 PRK06926 flagellar motor prote 67.5 20 0.00043 37.2 7.6 119 208-367 142-260 (271)
47 PF09548 Spore_III_AB: Stage I 65.8 22 0.00047 34.0 7.0 143 280-448 8-163 (170)
48 PLN03088 SGT1, suppressor of 65.3 30 0.00064 36.7 8.6 92 245-346 10-103 (356)
49 PRK12370 invasion protein regu 64.4 8.9 0.00019 42.8 4.7 54 245-307 346-400 (553)
50 PF13181 TPR_8: Tetratricopept 63.2 13 0.00028 25.0 3.7 28 281-308 3-30 (34)
51 PF13176 TPR_7: Tetratricopept 62.7 6.3 0.00014 27.8 2.1 24 239-262 1-24 (36)
52 KOG0553 TPR repeat-containing 61.6 6.5 0.00014 41.4 2.8 56 243-307 121-177 (304)
53 TIGR02917 PEP_TPR_lipo putativ 60.9 11 0.00024 41.9 4.6 59 239-306 161-220 (899)
54 TIGR02917 PEP_TPR_lipo putativ 60.2 16 0.00034 40.6 5.7 60 240-306 93-152 (899)
55 PF12688 TPR_5: Tetratrico pep 59.5 17 0.00037 33.1 4.8 64 239-307 40-103 (120)
56 PF10300 DUF3808: Protein of u 59.5 14 0.0003 40.8 5.1 64 240-307 270-333 (468)
57 COG5600 Transcription-associat 59.5 1.1E+02 0.0023 33.8 11.4 187 183-393 120-320 (413)
58 PF09012 FeoC: FeoC like trans 59.0 9.1 0.0002 31.0 2.7 42 427-468 2-43 (69)
59 COG4010 Uncharacterized protei 57.4 46 0.001 32.0 7.4 43 351-399 70-112 (170)
60 PF10602 RPN7: 26S proteasome 56.9 7.6 0.00016 37.3 2.2 74 227-307 66-141 (177)
61 TIGR03302 OM_YfiO outer membra 56.3 17 0.00037 34.9 4.6 62 240-307 36-98 (235)
62 KOG1840 Kinesin light chain [C 56.1 10 0.00022 42.7 3.3 58 246-307 334-395 (508)
63 PF13374 TPR_10: Tetratricopep 56.0 23 0.00049 24.4 4.1 29 280-308 3-31 (42)
64 TIGR00990 3a0801s09 mitochondr 54.9 17 0.00036 40.8 4.9 56 243-307 405-461 (615)
65 PF13428 TPR_14: Tetratricopep 54.8 18 0.00038 26.4 3.4 27 281-307 3-29 (44)
66 PRK11788 tetratricopeptide rep 54.3 53 0.0012 33.7 8.1 59 240-307 183-242 (389)
67 cd05804 StaR_like StaR_like; a 53.5 26 0.00056 35.6 5.6 61 240-305 151-212 (355)
68 PRK11189 lipoprotein NlpI; Pro 51.6 25 0.00054 35.9 5.2 53 246-307 73-126 (296)
69 cd05804 StaR_like StaR_like; a 51.4 27 0.00059 35.4 5.4 58 241-307 118-176 (355)
70 PRK11788 tetratricopeptide rep 51.2 20 0.00044 36.8 4.5 63 241-307 73-135 (389)
71 PF07720 TPR_3: Tetratricopept 49.7 31 0.00067 25.1 3.9 22 282-303 4-25 (36)
72 PHA02053 hypothetical protein 49.6 21 0.00046 32.1 3.6 21 148-169 3-23 (115)
73 COG1729 Uncharacterized protei 49.2 34 0.00073 35.5 5.6 55 246-306 150-205 (262)
74 PRK12370 invasion protein regu 48.4 27 0.00058 39.0 5.1 55 243-306 378-433 (553)
75 PF14938 SNAP: Soluble NSF att 48.3 33 0.00072 34.8 5.4 100 229-343 101-208 (282)
76 PRK11447 cellulose synthase su 48.2 25 0.00055 42.8 5.3 58 241-306 607-664 (1157)
77 KOG1497 COP9 signalosome, subu 47.9 28 0.00061 37.5 4.8 61 428-501 306-368 (399)
78 PF13525 YfiO: Outer membrane 46.8 18 0.00039 35.0 3.1 58 244-307 12-70 (203)
79 PF07721 TPR_4: Tetratricopept 45.9 20 0.00043 23.6 2.3 23 239-261 3-25 (26)
80 TIGR03302 OM_YfiO outer membra 45.6 26 0.00056 33.7 3.9 58 243-306 172-230 (235)
81 PLN02161 beta-amylase 44.7 17 0.00036 41.0 2.7 32 120-152 151-201 (531)
82 TIGR03818 MotA1 flagellar moto 44.1 33 0.00071 35.8 4.7 98 184-301 120-229 (282)
83 PRK10866 outer membrane biogen 44.0 24 0.00052 35.5 3.6 75 245-339 40-115 (243)
84 PF12862 Apc5: Anaphase-promot 39.8 26 0.00056 29.9 2.7 61 247-307 8-69 (94)
85 PF13176 TPR_7: Tetratricopept 39.3 47 0.001 23.2 3.5 26 282-307 2-27 (36)
86 PLN02803 beta-amylase 38.6 24 0.00051 40.0 2.7 34 118-152 139-191 (548)
87 PF08561 Ribosomal_L37: Mitoch 38.6 10 0.00022 32.7 -0.0 27 126-152 14-44 (85)
88 PLN02905 beta-amylase 38.6 23 0.0005 40.9 2.7 34 118-152 318-370 (702)
89 PLN02705 beta-amylase 38.5 22 0.00047 40.9 2.5 33 118-151 300-351 (681)
90 PRK15363 pathogenicity island 38.5 3.7E+02 0.0081 25.9 10.6 110 246-372 44-157 (157)
91 KOG2076 RNA polymerase III tra 38.4 52 0.0011 39.4 5.5 54 247-307 424-477 (895)
92 PF10300 DUF3808: Protein of u 38.1 1E+02 0.0022 34.1 7.6 78 229-314 297-382 (468)
93 PRK11447 cellulose synthase su 38.0 53 0.0011 40.1 5.8 67 232-307 346-413 (1157)
94 KOG3060 Uncharacterized conser 37.4 85 0.0019 32.9 6.3 90 242-360 159-249 (289)
95 PRK02603 photosystem I assembl 37.3 76 0.0017 29.4 5.6 62 239-309 74-143 (172)
96 PRK14720 transcript cleavage f 37.2 57 0.0012 39.4 5.7 87 239-335 33-119 (906)
97 PLN02801 beta-amylase 36.6 25 0.00053 39.6 2.5 32 120-152 71-121 (517)
98 PLN00197 beta-amylase; Provisi 36.3 26 0.00057 39.8 2.7 32 120-152 161-211 (573)
99 PRK12544 RNA polymerase sigma 35.9 2.5E+02 0.0055 27.2 9.2 35 436-470 161-195 (206)
100 PRK09782 bacteriophage N4 rece 35.6 96 0.0021 37.8 7.4 58 241-307 613-671 (987)
101 COG4235 Cytochrome c biogenesi 35.5 38 0.00083 35.6 3.5 34 274-307 222-255 (287)
102 PF13432 TPR_16: Tetratricopep 35.4 47 0.001 25.4 3.3 51 283-353 1-51 (65)
103 PRK15174 Vi polysaccharide exp 34.5 52 0.0011 37.7 4.8 57 241-306 288-345 (656)
104 PF13429 TPR_15: Tetratricopep 34.3 45 0.00098 33.2 3.8 56 243-306 186-241 (280)
105 PF09976 TPR_21: Tetratricopep 33.6 52 0.0011 29.7 3.7 64 236-304 47-110 (145)
106 PRK06743 flagellar motor prote 33.0 80 0.0017 32.6 5.3 109 212-361 138-246 (254)
107 KOG1125 TPR repeat-containing 32.1 80 0.0017 36.2 5.5 75 241-315 434-534 (579)
108 CHL00033 ycf3 photosystem I as 31.9 1.1E+02 0.0023 28.2 5.6 61 239-308 74-142 (168)
109 KOG1128 Uncharacterized conser 31.4 46 0.00099 39.1 3.6 32 276-307 516-547 (777)
110 PF10075 PCI_Csn8: COP9 signal 30.2 42 0.00092 30.7 2.6 32 428-459 86-117 (143)
111 PRK08456 flagellar motor prote 30.0 1.6E+02 0.0035 30.1 7.0 96 229-360 153-248 (257)
112 PRK15174 Vi polysaccharide exp 29.6 70 0.0015 36.7 4.8 57 242-307 323-380 (656)
113 TIGR02561 HrpB1_HrpK type III 28.5 75 0.0016 30.6 3.9 81 239-344 12-92 (153)
114 PRK10370 formate-dependent nit 28.3 55 0.0012 31.8 3.1 33 276-308 70-102 (198)
115 KOG2796 Uncharacterized conser 28.2 1.5E+02 0.0032 31.6 6.3 65 240-306 215-279 (366)
116 PRK15331 chaperone protein Sic 27.9 1.1E+02 0.0024 29.7 5.1 124 273-424 31-154 (165)
117 PRK12482 flagellar motor prote 27.5 1E+02 0.0022 32.4 5.1 70 212-301 160-229 (287)
118 PRK09782 bacteriophage N4 rece 26.3 81 0.0017 38.4 4.6 57 243-308 649-706 (987)
119 PF13525 YfiO: Outer membrane 25.6 1.1E+02 0.0023 29.6 4.6 62 239-306 44-117 (203)
120 smart00139 MyTH4 Domain in Myo 25.5 2.2E+02 0.0047 26.6 6.5 96 296-423 20-115 (144)
121 PRK15431 ferrous iron transpor 24.8 97 0.0021 26.7 3.6 43 426-468 3-45 (78)
122 PF14938 SNAP: Soluble NSF att 24.7 85 0.0018 31.8 3.9 62 241-304 159-221 (282)
123 PF14559 TPR_19: Tetratricopep 23.8 66 0.0014 24.6 2.3 26 240-265 28-53 (68)
124 KOG2688 Transcription-associat 23.8 2E+02 0.0044 31.6 6.7 134 237-387 163-297 (394)
125 PF14853 Fis1_TPR_C: Fis1 C-te 22.9 1.2E+02 0.0026 23.9 3.6 26 282-307 4-29 (53)
126 PF12862 Apc5: Anaphase-promot 22.3 66 0.0014 27.4 2.2 31 234-265 39-70 (94)
127 PRK10049 pgaA outer membrane p 22.2 1.1E+02 0.0024 35.7 4.6 57 241-307 87-144 (765)
128 KOG2581 26S proteasome regulat 21.6 8.4E+02 0.018 27.5 10.7 176 240-455 212-393 (493)
129 PF08769 Spo0A_C: Sporulation 21.1 74 0.0016 28.5 2.3 51 323-385 33-83 (106)
130 PF01506 HCV_NS5a: Hepatitis C 20.1 47 0.001 22.3 0.6 9 144-152 2-10 (23)
No 1
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=100.00 E-value=2e-158 Score=1238.77 Aligned_cols=391 Identities=60% Similarity=1.045 Sum_probs=384.7
Q ss_pred HhHHhHHHhHHHHHHHHhc--CCcccCCchhHHHHhhhHHHhhhcchhhhhhcccCCCHHHHHHHhhc-CCCcchHHHHH
Q 009775 116 KQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQY-DQAWNVYGVLN 192 (526)
Q Consensus 116 ~dR~~Sw~nYc~LF~~lL~--g~v~l~LPn~WlWDiiDEFVYQfQsfc~yR~k~~~k~~eei~~l~~~-~~vW~~~~VLn 192 (526)
|||++||+|||+|||+||+ ||++|+|||+||||||||||||||||||||+|++++++||++.|+++ |++|+|++|||
T Consensus 1 EdR~~Sw~nYc~LF~~iL~s~~p~~l~LPn~WlwDiiDEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLn 80 (404)
T PF10255_consen 1 EDRFESWDNYCELFNYILNSDGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLN 80 (404)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcccCCCcHHHHHHHHHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHH
Confidence 6999999999999999997 88999999999999999999999999999999999999999999988 89999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCccccc
Q 009775 193 FLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYT 272 (526)
Q Consensus 193 ~L~sLv~kS~I~e~L~~~~~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~ 272 (526)
+|||||+||+|++||+++++|++|++++|+| |++|+||||||||+|||||||||||||++|||+|+|||++++++||
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~---g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~ 157 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEY---GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT 157 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhccc---ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-ccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhh
Q 009775 273 SVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTK-QYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEE 351 (526)
Q Consensus 273 ~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k-~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe 351 (526)
+||+|||||+||+||||||||||+||||+|++||+||+|+| ++++|+||||+|+|++||||+|+|||++|||++ +||
T Consensus 158 ~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~--lde 235 (404)
T PF10255_consen 158 KVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQR--LDE 235 (404)
T ss_pred cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCC--CCH
Confidence 99999999999999999999999999999999999999999 778999999999999999999999999999987 999
Q ss_pred HHHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHHhhhhhhh
Q 009775 352 TVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPS-APSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGV 430 (526)
Q Consensus 352 ~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~-~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~l~~l 430 (526)
+|+++|||||||||.+||+||+++| +|||++||||||+|+ ||+++.|..+++.||+++|+++||+||++|+.+|+|
T Consensus 236 ~i~~~lkeky~ek~~kmq~gd~~~f---~elF~~acPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~l 312 (404)
T PF10255_consen 236 SISSQLKEKYGEKMEKMQRGDEEAF---EELFSFACPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTL 312 (404)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHH---HHHHHhhCCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999999999999999 999999999999999 888899999999999999999999999999999999
Q ss_pred hhhhhhccccChhHHhcccCCChhHHHHHHHHHhhccccc-ccC-------CceeccCceeEEEeCCeEEEecccccchh
Q 009775 431 RSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAV-DSD-------GKITSNADVDFYIDDNMIHVVESKPVKRY 502 (526)
Q Consensus 431 RsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l-~~~-------G~~~~~sdlDF~Id~dmIhI~e~k~~r~~ 502 (526)
||||||||||+++|||+|||+|+++||++|||+|||+||+ +|+ |++++++|+|||||+|||||+|+|++|||
T Consensus 313 RSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll~~K~k~~ql~~w~~g~sll~G~~~~~~dlDf~Id~D~IhI~e~k~~r~~ 392 (404)
T PF10255_consen 313 RSYLKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKSRQLVRWSGGASLLDGEFQSSSDLDFYIDGDMIHIAETKVARRY 392 (404)
T ss_pred HHHHHhhcCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCCcccccceeecCceEEEEeCCEEEEeeccccchh
Confidence 9999999999999999999999999999999999999999 887 89999999999999999999999999999
Q ss_pred HhHHHHHHHHHH
Q 009775 503 GDFFLRQIAKLE 514 (526)
Q Consensus 503 ~d~Fir~i~k~~ 514 (526)
||||+|||+|||
T Consensus 393 ~d~F~r~i~k~e 404 (404)
T PF10255_consen 393 GDFFIRQINKFE 404 (404)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 2
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=8.7e-150 Score=1154.52 Aligned_cols=475 Identities=42% Similarity=0.738 Sum_probs=467.0
Q ss_pred CcHHHHHHHHHHHHH-hhhcCHHHHHHHHHhhHHHhHHHhcCCCCCCCHHHhhhhcCCChhHHHHHHHHhhhhhhcccC-
Q 009775 35 VPDSVKSFVVHLYRH-IREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS- 112 (526)
Q Consensus 35 vP~~Vk~Fl~~l~~~-i~e~nv~eI~~lYE~~F~~lte~yfk~s~WP~~e~Va~~v~~D~vFl~LYkELyyRH~yar~~- 112 (526)
+|++|+-++..+.++ +.|+|++||+.+||+.|+++|||+|++++||+.+.||++++||.+|++|||||||||+|||+.
T Consensus 31 ~~de~~~~l~~~~q~~v~e~~vpei~~lyen~~pqlser~fdntawPe~~~v~~~~~n~~~f~ilykelYyrh~~ari~~ 110 (525)
T KOG3677|consen 31 KPDEVQYKLLLFKQTGVLEQNVPEIQGLYENPFPQLSERFFDNTAWPEESKVASILPNEKTFAILYKELYYRHFSARIAE 110 (525)
T ss_pred ccHHHHHHHHHHHHhhhccccchhhhhhhcCCchhHHHHHhcCCCCcchhhhhhcCCCcchhHHHHHHHHHHHHHHhccC
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -CChHhHHhHHHhHHHHHHHHhc--CCcccCCchhHHHHhhhHHHhhhcchhhhhhcccCCCHHHHHHHhhcCC-CcchH
Q 009775 113 -PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQ-AWNVY 188 (526)
Q Consensus 113 -pt~~dR~~Sw~nYc~LF~~lL~--g~v~l~LPn~WlWDiiDEFVYQfQsfc~yR~k~~~k~~eei~~l~~~~~-vW~~~ 188 (526)
|.+|+|.+||+|||++|+.|++ +|++|+||++|+||++| ||||||+||+||++...|++|||+.|..++. .||++
T Consensus 111 gplLe~r~~sy~ny~~~f~~l~s~~~P~~l~lp~~wlwe~~D-Fvyqfq~f~~yr~n~~krn~deie~l~si~sn~wniy 189 (525)
T KOG3677|consen 111 GPLLEIRNCSYDNYETVFKQLPSFTWPDELTLPKSWLWENQD-FVYQFQEFKQYRANAEKRNKDEIENLQSIFSNNWNIY 189 (525)
T ss_pred CCchhhhhhhHhhHHHHHHhccccCCCcccccccccchhHHH-HHHHHHHHHHHhcChhhcCHHHHHHHHhcccccchHH
Confidence 8999999999999999999998 89999999999999999 9999999999999999999999999999886 99999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCc
Q 009775 189 GVLNFLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQ 268 (526)
Q Consensus 189 ~VLn~L~sLv~kS~I~e~L~~~~~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k 268 (526)
.|||+|||||+||+|++||++..+|.||+++||+| |.+..|+||||||+|||||+|+|||| |+| ++++||+++|
T Consensus 190 ~iLnil~slv~ksqi~~ql~~~~s~~dp~~va~~~---g~s~~y~~LgyfsL~GLlR~H~lLgD-hQa--t~q~idi~pk 263 (525)
T KOG3677|consen 190 WILNILHSLVDKSQISIQLTASVSNKDPALVALIF---GASQPYANLGYFSLLGLLRMHILLGD-HQA--TSQILDIMPK 263 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhh---ccccHHHhhhHHHHHHHHHHHHHhhh-hHh--hhhhhhcCch
Confidence 99999999999999999999999999999999999 99999999999999999999999999 788 9999999999
Q ss_pred ccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc-cCChhHHHHhhHHHHHHHHHHHHHhhCCCCc
Q 009775 269 GVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYH-QKSPQYEQILKKNEQMYALLAICLSLCPQVK 347 (526)
Q Consensus 269 ~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~-~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~ 347 (526)
++|++||.|.|| |+|||||||||||+||||+|..||+||+|+|++. .++||||+|+|++|||++|+|||++++|++
T Consensus 264 ~iy~t~p~c~VT--Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~- 340 (525)
T KOG3677|consen 264 EIYGTEPMCRVT--YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQM- 340 (525)
T ss_pred hhcCcccceeEe--eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchh-
Confidence 999999999999 9999999999999999999999999999999987 788999999999999999999999999987
Q ss_pred chhhHHHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCCCCCCCCCcCCcchHHHHHHHHHHHHHHHHhhhh
Q 009775 348 HVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLL 427 (526)
Q Consensus 348 ~lDe~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~l 427 (526)
+||+|+++++|||||+|.+||.||++.| +++|+++||||++|++|+|+.+..|+++||..+|++.||++|.+|..+
T Consensus 341 -iDESi~s~l~Ek~~d~ml~mqng~~q~~---ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl 416 (525)
T KOG3677|consen 341 -IDESIHSQLAEKYGDKMLPMQNGDPQVF---KSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADL 416 (525)
T ss_pred -hhHHHHHHHHHHhcchhhhhhcCChHHH---HHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccc
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccccChhHHhcccCCChhH---HHHHHHHHhhcccccccC-------CceeccCceeEEEeCCeEEEeccc
Q 009775 428 SGVRSFLKVYSSLYLSELATYMEVDEPT---LRTILMTYKHKTHAVDSD-------GKITSNADVDFYIDDNMIHVVESK 497 (526)
Q Consensus 428 ~~lRsyLKLYtti~l~KLAsfldvd~~~---lr~~Ll~~K~k~r~l~~~-------G~~~~~sdlDF~Id~dmIhI~e~k 497 (526)
|++|||||||||+|++|||+|||+++++ ++.+|+++||||++++|+ |++.+.+++|||||.|||||+++|
T Consensus 417 ~~~rsylklyTt~P~kkla~F~D~~d~~~dk~li~Ll~~khkm~nlv~~sg~s~~d~~f~~~s~idfyid~dmi~iaDtk 496 (525)
T KOG3677|consen 417 PTIRSYLKLYTTLPVKKLASFLDLTDQERDKFLIQLLVFKHKMKNLVWTSGPSDLDDAFFSRSEIDFYIDKDMIHIADTK 496 (525)
T ss_pred hHHHHHHHHHHhccHHHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHhcCCccccccccCcceeeEEechhHHHHHhHH
Confidence 9999999999999999999999999888 999999999999999998 888999999999999999999999
Q ss_pred ccchhHhHHHHHHHHHHHHHHhcccc
Q 009775 498 PVKRYGDFFLRQIAKLEGLINDLDRV 523 (526)
Q Consensus 498 ~~r~~~d~Fir~i~k~~~~~~~l~~~ 523 (526)
++|||||+|||+|+||+|+.+.|+..
T Consensus 497 v~r~~gd~fir~i~kf~El~~vLK~i 522 (525)
T KOG3677|consen 497 VARRYGDIFIRQIHKFEELNRVLKLI 522 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999864
No 3
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=96.94 E-value=0.012 Score=63.49 Aligned_cols=228 Identities=18% Similarity=0.298 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHhhHHHhHHHhcCCCCCCCHHHhhhhc-CCChhHHHHHHHHhhhhhhcccCCChH
Q 009775 38 SVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYV-DNDHVFCLLYREMWFRHLYARLSPTLK 116 (526)
Q Consensus 38 ~Vk~Fl~~l~~~i~e~nv~eI~~lYE~~F~~lte~yfk~s~WP~~e~Va~~v-~~D~vFl~LYkELyyRH~yar~~pt~~ 116 (526)
-+.-|.++||..|.+++.-|++.+|--....+- ++--...||.+=.+-... =+...|+-+|+|+.+|.+-+.-.
T Consensus 96 ykelYyrh~~ari~~gplLe~r~~sy~ny~~~f-~~l~s~~~P~~l~lp~~wlwe~~DFvyqfq~f~~yr~n~~kr---- 170 (525)
T KOG3677|consen 96 YKELYYRHFSARIAEGPLLEIRNCSYDNYETVF-KQLPSFTWPDELTLPKSWLWENQDFVYQFQEFKQYRANAEKR---- 170 (525)
T ss_pred HHHHHHHHHHHhccCCCchhhhhhhHhhHHHHH-HhccccCCCcccccccccchhHHHHHHHHHHHHHHhcChhhc----
Confidence 355789999999999999999987533332221 222368899984443332 11223999999999987654221
Q ss_pred hHHhHHHhHHHHHHHHhcCCcccCCchhHHHHhhhHHHhhhcchhhhhhcccCCCHHHHHHHh--hcC----CCcchHHH
Q 009775 117 QRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLR--QYD----QAWNVYGV 190 (526)
Q Consensus 117 dR~~Sw~nYc~LF~~lL~g~v~l~LPn~WlWDiiDEFVYQfQsfc~yR~k~~~k~~eei~~l~--~~~----~vW~~~~V 190 (526)
..+-=+|||++|.. .+|..|+-||+.+.|.|=|---|-.+-.+++.++-.+..- ..+ +..+.-+.
T Consensus 171 -n~deie~l~si~sn--------~wniy~iLnil~slv~ksqi~~ql~~~~s~~dp~~va~~~g~s~~y~~LgyfsL~GL 241 (525)
T KOG3677|consen 171 -NKDEIENLQSIFSN--------NWNIYWILNILHSLVDKSQISIQLTASVSNKDPALVALIFGASQPYANLGYFSLLGL 241 (525)
T ss_pred -CHHHHHHHHhcccc--------cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccccHHHhhhHHHHHHH
Confidence 34455699998876 5899999999999999999777777777777777666322 111 12222222
Q ss_pred HHHHHHHHh----hhhHHHHHHHHhccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCccc-
Q 009775 191 LNFLQALVE----KSMIIQILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDI- 265 (526)
Q Consensus 191 Ln~L~sLv~----kS~I~e~L~~~~~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl- 265 (526)
|. +|+|+. .|+|.++..-+--|-+|..- +.+..|+ -|...|.|-.|+++.-+|=+
T Consensus 242 lR-~H~lLgDhQat~q~idi~pk~iy~t~p~c~-----------VTY~VGF--------ayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 242 LR-MHILLGDHQATSQILDIMPKEIYGTEPMCR-----------VTYQVGF--------AYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred HH-HHHHhhhhHhhhhhhhcCchhhcCccccee-----------EeeehhH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 22 245542 34444444333223333221 1124443 25578999999999888766
Q ss_pred -CC-cccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009775 266 -TQ-QGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIY 310 (526)
Q Consensus 266 -~~-k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~ 310 (526)
.+ |+++++ ..|+|=|..+=.|---.++.|++-+.
T Consensus 302 Iqrtks~~~~-----------~~y~~d~inKq~eqm~~llai~l~~y 337 (525)
T KOG3677|consen 302 IQRTKSMFSR-----------TTYQYDMINKQNEQMHHLLAICLSMY 337 (525)
T ss_pred HHHHHhhhcc-----------hhhhHhhhhhhHHHHHHHHHHHHHhC
Confidence 22 566643 24788888888888888888777554
No 4
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.83 E-value=0.011 Score=48.76 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNK 304 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~ 304 (526)
+..|.++|..+|+|..|+++++...++. -++...|..|-|++=|+||.+||++|..
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~~~~~~---------~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQKLKLDP---------SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHCHTHHH---------CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3457899999999999999998833333 3366777889999999999999999864
No 5
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.58 E-value=0.018 Score=45.56 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=48.0
Q ss_pred HHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
|..+|.-.|||..|+++++.+ .++ +.++..++..|.+|..++||.+|++.|..+|-
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~---------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD---------PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC---------cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 457888999999999999873 333 33888999999999999999999999999883
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.51 E-value=0.021 Score=44.77 Aligned_cols=57 Identities=26% Similarity=0.517 Sum_probs=47.0
Q ss_pred HHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Q 009775 242 GLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLR-RYVDAIREFNKILL 307 (526)
Q Consensus 242 GLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlr-RY~DAir~F~~iL~ 307 (526)
-+-..+...|||..|++..+. |++++ -+..++|..|.||+.++ +|.+|++.|..++.
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p---------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDP---------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHST---------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344677889999999998876 55543 35679999999999999 89999999998873
No 7
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.11 E-value=0.045 Score=44.01 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+-.|.+++..+|+|.+|++.++. +++ .+.+ ..-.+=-+.+++.+|.+|..+++|.+|+..|..++-
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI-EEQL-GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT-TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45567889999999999998876 444 2111 111122378899999999999999999999999875
No 8
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.90 E-value=0.088 Score=35.65 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 281 TIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 281 ~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.+|+.|.+|+.+++|.+|++.|...+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 579999999999999999999999874
No 9
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.75 E-value=0.17 Score=34.63 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 280 TTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 280 s~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.++|..|-+|+++++|.+|+..|...|-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3689999999999999999999999874
No 10
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.53 E-value=0.19 Score=39.02 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=46.0
Q ss_pred HHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
+-+.+.-.|||..|+++++.+--.. +-+....+..|.+++.+++|.+|+..|..++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999998754322 2378889999999999999999999998876
No 11
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.26 E-value=0.68 Score=34.80 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=45.0
Q ss_pred HHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..+...+...|++..|++.++.+ ++.+.. ...++..|-+|...+++.+|++.|..++-
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667789999999998764 333322 16788999999999999999999988764
No 12
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.25 E-value=0.66 Score=44.38 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCC
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKS 319 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks 319 (526)
.||-=++=++|+|..|+.+-+- +.+++ =+=..++|.|-|||++++-..|.++|...+..-. ..
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-------~~ 136 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQIKI---------DAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-------EV 136 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC---------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-------cC
Confidence 3555567789999999987553 22222 1235689999999999999999999999987632 22
Q ss_pred hhHHHHhhHHHHHHHHH
Q 009775 320 PQYEQILKKNEQMYALL 336 (526)
Q Consensus 320 ~q~d~i~K~~eqMyaLl 336 (526)
+++..|.++.+.|...|
T Consensus 137 ~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 137 SEHQILRQRAEKMLQQL 153 (157)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 58889999999988765
No 13
>PRK15331 chaperone protein SicA; Provisional
Probab=91.40 E-value=0.63 Score=44.90 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcccHHHHhhhccC---cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQP---IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYH 316 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~---Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~ 316 (526)
+.||-=++=++|.|..|+..-.- ++.+.. ..+||.|-|||||++-..|.++|..++.
T Consensus 74 ~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-----------~p~f~agqC~l~l~~~~~A~~~f~~a~~--------- 133 (165)
T PRK15331 74 TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-----------RPVFFTGQCQLLMRKAAKARQCFELVNE--------- 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-----------CccchHHHHHHHhCCHHHHHHHHHHHHh---------
Confidence 48999999999999999875322 333221 2289999999999999999999999875
Q ss_pred cCChhHHHHhhHHHHHHHHHH
Q 009775 317 QKSPQYEQILKKNEQMYALLA 337 (526)
Q Consensus 317 ~ks~q~d~i~K~~eqMyaLlA 337 (526)
+ +++..+..++..|+..|.
T Consensus 134 -~-~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 134 -R-TEDESLRAKALVYLEALK 152 (165)
T ss_pred -C-cchHHHHHHHHHHHHHHH
Confidence 2 367777777888776544
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.17 E-value=0.49 Score=41.30 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 242 GLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 242 GLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.+...+..+|+|..|+++++.+ ++++ -...++|+.|.+|+.++++.+|++.|..++-
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDP---------DDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566679999999887764 3443 2467789999999999999999999988775
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.87 E-value=0.52 Score=43.19 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=46.4
Q ss_pred HHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.++-.++..+|+|..|+...+..= ...+.+...+++.|.|+..++|+.+|+..|...+.
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al--------~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHAL--------MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH--------hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556677788999999998876621 12345788899999999999999999999988775
No 16
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=89.66 E-value=1 Score=33.86 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
+...+..++...|++..|++.++.. ++.+.. ..+++..|-+++.++++.+|.+.|..++
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------AKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556677788889999999988773 343322 2788899999999999999999988765
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=89.41 E-value=0.49 Score=49.96 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
...+..+|..+|+|..|+..++. |++++ .+...++..|.+|+++++|.+|++.|...+-
T Consensus 39 ~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 39 YADRAQANIKLGNFTEAVADANKAIELDP---------SLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677788899999999998876 34444 3445688899999999999999999988775
No 18
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=89.37 E-value=2.2 Score=35.50 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=47.7
Q ss_pred HHHHHhhhhhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhcccccccCCceeccCceeEEEe--CCeEEEecc
Q 009775 419 YEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYID--DNMIHVVES 496 (526)
Q Consensus 419 ~eV~~q~~l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l~~~G~~~~~sdlDF~Id--~dmIhI~e~ 496 (526)
+.+........|.+|.+-|++|+++.||..++++++++...|+.+ +..+.++--|| +++|++...
T Consensus 4 ~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~-------------i~~~~l~~~ID~~~~~v~~~~~ 70 (88)
T smart00088 4 ERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKA-------------IRDGEISAKIDQVNGIVEFEEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHH-------------HHCCCeEEEEcCcCCEEEECCC
Confidence 345555667889999999999999999999999988776555443 22344677787 457777644
No 19
>smart00753 PAM PCI/PINT associated module.
Probab=89.37 E-value=2.2 Score=35.50 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=47.7
Q ss_pred HHHHHhhhhhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhcccccccCCceeccCceeEEEe--CCeEEEecc
Q 009775 419 YEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYID--DNMIHVVES 496 (526)
Q Consensus 419 ~eV~~q~~l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l~~~G~~~~~sdlDF~Id--~dmIhI~e~ 496 (526)
+.+........|.+|.+-|++|+++.||..++++++++...|+.+ +..+.++--|| +++|++...
T Consensus 4 ~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~-------------i~~~~l~~~ID~~~~~v~~~~~ 70 (88)
T smart00753 4 ERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKA-------------IRDGEISAKIDQVNGIVEFEEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHH-------------HHCCCeEEEEcCcCCEEEECCC
Confidence 345555667889999999999999999999999988776555443 22344677787 457777644
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=88.60 E-value=2.2 Score=37.17 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.++++.......|+|..|+..++.+ +++ +.....++..|.+|+.+++|.+|+..|..++-
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD---------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888999999999998663 222 23457888999999999999999999998764
No 21
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=87.39 E-value=2.2 Score=35.76 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=64.0
Q ss_pred HHHHHhhccChhhhcchHhhhhhcCCCcccCCCCCCCCCcCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCh
Q 009775 363 EKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYL 442 (526)
Q Consensus 363 dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~l~~lRsyLKLYtti~l 442 (526)
+=+....+||.+.| .+.....++.+..- | .+....+.+........|+++.+-|+++++
T Consensus 5 ~l~~~~~~~~~~~~---~~~l~~~~~~~~~~--~----------------~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~ 63 (105)
T PF01399_consen 5 ELLRAFRSGDLQEF---EEFLEKHSESLFKD--P----------------FLAEYVEQLKEKIRRRNLRQLSKPYSSISI 63 (105)
T ss_dssp HHHHHHHCT-HHHH---HHHHHHTCHHHHHC--T----------------THHHHHHHHHHHHHHHHHHHHHHC-SEEEH
T ss_pred HHHHHHHhCCHHHH---HHHHHHHHHHHHcC--c----------------cHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 33455677887777 66555543322221 0 122355666666777889999999999999
Q ss_pred hHHhcccCCChhHHHHHHHHHhhcccccccCCceeccCceeEEEeC--CeEEE
Q 009775 443 SELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYIDD--NMIHV 493 (526)
Q Consensus 443 ~KLAsfldvd~~~lr~~Ll~~K~k~r~l~~~G~~~~~sdlDF~Id~--dmIhI 493 (526)
+.+|..++++++++...|+.+-.. +.+.-.||. .+|++
T Consensus 64 ~~ia~~l~~~~~~vE~~l~~~I~~-------------~~i~~~ID~~~~~v~~ 103 (105)
T PF01399_consen 64 SEIAKALQLSEEEVESILIDLISN-------------GLIKAKIDQVNGVVVF 103 (105)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHT-------------TSSEEEEETTTTEEEE
T ss_pred HHHHHHhccchHHHHHHHHHHHHC-------------CCEEEEEECCCCEEEe
Confidence 999999999999998887766544 336677773 35544
No 22
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.28 E-value=3.6 Score=37.26 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=76.0
Q ss_pred HhhcCCC-cchHHHHHHHHHHHhhhhHHHHHHHHhccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHH
Q 009775 178 LRQYDQA-WNVYGVLNFLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTG 256 (526)
Q Consensus 178 l~~~~~v-W~~~~VLn~L~sLv~kS~I~e~L~~~~~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~A 256 (526)
++++|+. +....-|..=..+++...+.+-.+..+.-.+. ++.+ .+...+-+.|.|++.-.|+|..|
T Consensus 38 ~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~----------~~d~---~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 38 AKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN----------APDP---ELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred HHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------CCCH---HHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455644 77777777778888888888877666542220 1122 45567788999999999999999
Q ss_pred hhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHH
Q 009775 257 LKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKI 305 (526)
Q Consensus 257 Lk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~i 305 (526)
++.|+.+.-+. | .-....-.|=+|+-++++.+|+..|..-
T Consensus 105 l~~L~~~~~~~---~------~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 105 LATLQQIPDEA---F------KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHhccCcc---h------HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99998754222 1 1124556899999999999999998753
No 23
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=86.99 E-value=0.34 Score=37.65 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=39.8
Q ss_pred hcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 249 LLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 249 LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
-.|||..|++.++.+ +.++ . +..+.+..|-||+..++|.+|..++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--------~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--------D-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--------T-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 369999999999873 2233 2 667788999999999999999999988764
No 24
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.23 E-value=11 Score=40.61 Aligned_cols=89 Identities=22% Similarity=0.415 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhcccccccCCceeccCceeEEEe--CCe
Q 009775 413 QLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYID--DNM 490 (526)
Q Consensus 413 Ql~~Fl~eV~~q~~l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l~~~G~~~~~sdlDF~Id--~dm 490 (526)
|-+.|.+|++...- -.+|.=|.+++++-.|+=.+|+.+-+-..| |.++.++-+.+-|| +++
T Consensus 295 h~~yyvREMR~rvY----~QlLESYrsl~l~~MA~aFgVSVefiDreL-------------~rFI~~grL~ckIDrVnGV 357 (393)
T KOG0687|consen 295 HYRYYVREMRRRVY----AQLLESYRSLTLESMAKAFGVSVEFIDREL-------------GRFIAAGRLHCKIDRVNGV 357 (393)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCchHHHHHhHH-------------HHhhccCceeeeeecccce
Confidence 45788888875432 234566889999999988899877664443 77788888999999 556
Q ss_pred EEEeccccc-------chhHhHHHHHHHHHHHHHH
Q 009775 491 IHVVESKPV-------KRYGDFFLRQIAKLEGLIN 518 (526)
Q Consensus 491 IhI~e~k~~-------r~~~d~Fir~i~k~~~~~~ 518 (526)
|.+...... =.+||..++.|+|+..+++
T Consensus 358 VEtNrpD~KN~qyq~vikqGd~LLnriQK~~rvi~ 392 (393)
T KOG0687|consen 358 VETNRPDEKNAQYQAVIKQGDLLLNRIQKLSRVIN 392 (393)
T ss_pred eecCCccccchHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 655443222 1379999999999988775
No 25
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.50 E-value=1.4 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 281 TIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 281 ~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..|.+|-||..++++.+|++.|..++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 368999999999999999999999874
No 26
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.17 E-value=2 Score=26.22 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 280 TTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 280 s~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.+++..|-+|+-+++|.+|+..|...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987763
No 27
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.01 E-value=3.3 Score=32.16 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 281 TIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 281 ~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
+++..|-+++.+++|.+|+..|...+.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5778999999999999999999998864
No 28
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=81.09 E-value=1.8 Score=41.98 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHhhcccHHHHhhhccC-cccCCcc----------cccc------------------cccceehHHHHHHHHHHHH
Q 009775 242 GLLRVHCLLGDYHTGLKCLQP-IDITQQG----------VYTS------------------VIGSHITTIYHYGFANLML 292 (526)
Q Consensus 242 GLlRvh~LLGDY~~ALk~L~~-Idl~~k~----------l~~~------------------V~~c~Vs~~YyvGFaYlMl 292 (526)
.|-|++.-+|||..|+.+++. +.+++.. +|.. .-+-++..++..|++++++
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 344788889999999888876 2233221 1111 1344677778888888888
Q ss_pred hhHHHHHHHHHHHHH
Q 009775 293 RRYVDAIREFNKILL 307 (526)
Q Consensus 293 rRY~DAir~F~~iL~ 307 (526)
++|.+|+..+..+|-
T Consensus 158 g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 158 ADYAQAIELWQKVLD 172 (198)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888887777664
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=79.68 E-value=2.8 Score=42.88 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+...+-.++..+|||..|+..++. +++++. +...++..|.++..++||.+|++.|...+-
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 335566788899999999987765 444443 455778899999999999999999988763
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=79.20 E-value=3.9 Score=37.17 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+...+..++...||+..|++.++.. ++++. +...++..|-+|+.+++|.+|++.|..++.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPN---------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3345677889999999999988753 33322 224678889999999999999999999874
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=79.11 E-value=4.2 Score=37.24 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+-.+....|+|..|++.+.. ++++ +-+...++..|.++.+++||.+|+..|...+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~---------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ---------PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566789999999998776 3333 33567789999999999999999999999885
No 32
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=77.17 E-value=3.3 Score=33.10 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=26.2
Q ss_pred ehHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 279 ITTIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 279 Vs~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
..++..+|.+|..++||.+|+..|..+|--
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999875
No 33
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=76.98 E-value=5 Score=33.44 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=46.5
Q ss_pred HHHHHHHhhcccHHHHhhhccCcc-cCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPID-ITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~Id-l~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..+.+++.-.|+|..|++.++.+- ..+.+. -.....+..|.+|.-++++.+|++.|..++-
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSP------KAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCC------cccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 447788999999999999988743 333211 1245678899999999999999999988764
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=76.63 E-value=15 Score=34.19 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=45.8
Q ss_pred HHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..+..++...|||..|+..++.. ++++.. .=....++..|.+|..+++|.+|+..+...+.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDP------NDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556777889999999988753 333211 11245789999999999999999999988775
No 35
>PRK09110 flagellar motor protein MotA; Validated
Probab=75.77 E-value=3.6 Score=42.77 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=64.2
Q ss_pred CCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHh
Q 009775 214 LEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLR 293 (526)
Q Consensus 214 ~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlr 293 (526)
...+...++| .|.+=|+| +++||.-+ |.+++-++..+=..+..|-|+|+|=+.+||++..
T Consensus 162 ~~v~~~~g~~-----aPa~GiiG--tv~GLI~~-------------l~~l~~dp~~iG~~iAvAlv~TlyGi~lAn~i~~ 221 (283)
T PRK09110 162 AHALQKVADA-----LPAFGIVA--AVLGVVKT-------------MGSIDQPPAVLGALIGAALVGTFLGILLAYGFVG 221 (283)
T ss_pred HHHHHHHHhh-----CchhHHHH--HHHHHHHH-------------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 78887888 88888543 3344323333445789999999999999999987
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 009775 294 RYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLR 358 (526)
Q Consensus 294 RY~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lr 358 (526)
=-+..++.-+.--. ..+.=-+=.++||.-.-+|.. +.|.....|.
T Consensus 222 PiA~kl~~~~~~e~------------------~~~~~i~egi~ai~~G~nP~~--~~e~l~~~l~ 266 (283)
T PRK09110 222 PLAARLEQVVEEDT------------------KMYQCIKVTLLASLNGYAPQI--AVEFGRKTLP 266 (283)
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhCCCChHH--HHHHHHhhCC
Confidence 66655554333111 111112234666666667733 6666655554
No 36
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=74.31 E-value=2.4 Score=34.75 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=35.4
Q ss_pred cccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHH
Q 009775 250 LGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNK 304 (526)
Q Consensus 250 LGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~ 304 (526)
-|+|..|++..+.+ +..+. .. .-...|..|-||+.+++|..|+..+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCC------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 38999999988763 22331 01 444677799999999999999999876
No 37
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=73.38 E-value=39 Score=31.11 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+...+..++--.|+|..|+..++.. .+... +.-...+++.+|.+|.-++++.+|++.|...+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455666789999999987763 34221 111235789999999999999999999988774
No 38
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=72.09 E-value=12 Score=35.91 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=86.4
Q ss_pred cceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc--cCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHH
Q 009775 276 GSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYH--QKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETV 353 (526)
Q Consensus 276 ~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~--~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I 353 (526)
+|-+-+.--.|+-|.+-+||.+-.+.+..+...++..+.-- ...+--+.+.+-.++ .++.+
T Consensus 5 Ga~LIi~s~~~~G~~~a~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~~~-----------------~~~~~ 67 (171)
T PRK08307 5 GAVLIIAASTWIGFLYAKRYKERPRQLRELKAALQSLEAEIMYGHTPLPEALENIAKQ-----------------SPKPI 67 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHc-----------------cchhH
Confidence 33333444455566677888888887777776655444321 233333333332222 33333
Q ss_pred HHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCCC--CC-------CCCCcCCcchHHHHHHHHHHHHHHHHh
Q 009775 354 NSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSA--PS-------FEEPLVNYNQDAYRLQLKLFLYEVKQQ 424 (526)
Q Consensus 354 ~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~--P~-------~~~~~~n~~~e~~~~Ql~~Fl~eV~~q 424 (526)
... +.+--.+|.+++.++| .+.|..|.-+...... +. +.........|.+..|+++-+++++.+
T Consensus 68 ~~~----f~~~a~~L~~~~g~s~---~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~ 140 (171)
T PRK08307 68 STL----FQRFSERLESGEGETA---YEAWEKALEENWKNTALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLERE 140 (171)
T ss_pred HHH----HHHHHHHHHhCCCCCH---HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHH
Confidence 333 3333345777777777 7888777766554321 10 011123456788888999999999886
Q ss_pred h--hhhhhhhhhhhccccChhHHhccc
Q 009775 425 Q--LLSGVRSFLKVYSSLYLSELATYM 449 (526)
Q Consensus 425 ~--~l~~lRsyLKLYtti~l~KLAsfl 449 (526)
. .--..+.+-|||+++++ |++++
T Consensus 141 ~~~a~~~~~k~~Kmy~~LGv--l~Gl~ 165 (171)
T PRK08307 141 EEEAEEEQKKNEKMYKYLGF--LAGLL 165 (171)
T ss_pred HHHHHHHHHhCCcHHHHHHH--HHHHH
Confidence 4 44567788999999887 66543
No 39
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.60 E-value=4.6 Score=41.35 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHhhcccHHHHhhhccCcc-cCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 235 LGYFSMVGLLRVHCLLGDYHTGLKCLQPID-ITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 235 LGYFSlIGLlRvh~LLGDY~~ALk~L~~Id-l~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
--|..-++|+.- -|||..|++.++.+- ..+.+-|+ + ..+|+.|.+|+..++|.+|+..|..++.
T Consensus 144 ~~Y~~A~~l~~~---~~~y~~Ai~af~~fl~~yP~s~~a--~----~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 144 TDYNAAIALVQD---KSRQDDAIVAFQNFVKKYPDSTYQ--P----NANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHHCcCCcch--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 336666666322 299999999987633 34443322 2 3469999999999999999999999774
No 40
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=67 Score=34.40 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhcccccccCCceeccCceeEEEe-
Q 009775 409 AYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYID- 487 (526)
Q Consensus 409 ~~~~Ql~~Fl~eV~~q~~l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l~~~G~~~~~sdlDF~Id- 487 (526)
-..++...|-+|++..--.- .|.=|.+++++-.|+-.+|+.+-+...| |++++.+-+.+.||
T Consensus 305 fl~rh~d~fvREMRrrvYaQ----lLESYr~lsl~sMA~tFgVSV~yvdrDL-------------g~FIp~~~LncvIDR 367 (412)
T COG5187 305 FLGRHVDLFVREMRRRVYAQ----LLESYRLLSLESMAQTFGVSVEYVDRDL-------------GEFIPEGRLNCVIDR 367 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHhCccHHHHhhhH-------------HhhCCCCceeeeeec
Confidence 35788999999998654433 3444789999999988898877653221 99999999999999
Q ss_pred -CCeEEEecccc--c-----chhHhHHHHHHHHHHHHH
Q 009775 488 -DNMIHVVESKP--V-----KRYGDFFLRQIAKLEGLI 517 (526)
Q Consensus 488 -~dmIhI~e~k~--~-----r~~~d~Fir~i~k~~~~~ 517 (526)
+.+|....... + =.+||-.++.++|+...+
T Consensus 368 vnGvVetnrpdekn~qy~~vVkqGd~ll~klqKy~atv 405 (412)
T COG5187 368 VNGVVETNRPDEKNQQYSSVVKQGDDLLRKLQKYVATV 405 (412)
T ss_pred ccceEeccCcchhhhhHHHHHhcchHHHHHHHHHHHHH
Confidence 44554433321 1 137999999999987765
No 41
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=70.57 E-value=6.6 Score=43.47 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=45.7
Q ss_pred HHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 246 VHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 246 vh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.+.-+|+|..|+.+++. |++++.. +.+ -..+|..|.||..++++.+|+.+|...+-
T Consensus 84 AL~~lGryeEAIa~f~rALeL~Pd~-----aeA-~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 84 SLFSKGRVKDALAQFETALELNPNP-----DEA-QAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc-----hHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66788999999999987 8887642 111 13479999999999999999999999875
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=70.12 E-value=12 Score=33.84 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..+..++...|+|..|++.++..--.. ..+-....++..|.+|+.++++.+|+..|...+.
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556778999999999888743211 1123445678899999999999999999998775
No 43
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=69.98 E-value=18 Score=34.77 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc--cCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 009775 281 TIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYH--QKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLR 358 (526)
Q Consensus 281 ~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~--~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lr 358 (526)
+.=-.|.-|.+-+||.+-.+.+..+...++..+.-- ...+--+.+.+-.++ .++.+...
T Consensus 9 i~s~~~~G~~~a~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~~~-----------------~~~~~~~~-- 69 (170)
T TIGR02833 9 VLSSTWIGFLYANRFKERPRQLRQLINALQSLEAEIVYGHTPLPEAFKKIALK-----------------SPKPVNLL-- 69 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHhh-----------------cchhHHHH--
Confidence 333445556677788888877777776655444321 233333333322222 23333222
Q ss_pred HHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCCC--C-------CCCCCcCCcchHHHHHHHHHHHHHHHHhhh--h
Q 009775 359 EKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSA--P-------SFEEPLVNYNQDAYRLQLKLFLYEVKQQQL--L 427 (526)
Q Consensus 359 Eky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~--P-------~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~--l 427 (526)
+.+--.+|++++.+.| .+.|..|.-+...... + ++.........|.+..|+++.+++++.+.. -
T Consensus 70 --f~~~a~~L~~~~g~s~---~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~~~a~ 144 (170)
T TIGR02833 70 --FESASERLKEGEGLTV---YEAWKKALNEVWKQTALQKSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQLTEAE 144 (170)
T ss_pred --HHHHHHHHHhCCCCCH---HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223335677776777 7777777665544321 1 001112345678888899999998888754 3
Q ss_pred hhhhhhhhhccccChhHHhccc
Q 009775 428 SGVRSFLKVYSSLYLSELATYM 449 (526)
Q Consensus 428 ~~lRsyLKLYtti~l~KLAsfl 449 (526)
-..+.+-|||+++++ |++++
T Consensus 145 ~~~~k~~Kmy~~LGv--l~Gl~ 164 (170)
T TIGR02833 145 DEQKKNEKMYRYLGV--LVGLM 164 (170)
T ss_pred HHHHhcccHHHHHHH--HHHHH
Confidence 556788999999887 66543
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=69.81 E-value=9.2 Score=31.83 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=44.3
Q ss_pred HHHHHHhhcccHHHHhhhccCcc-cCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 242 GLLRVHCLLGDYHTGLKCLQPID-ITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 242 GLlRvh~LLGDY~~ALk~L~~Id-l~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.+.......|||..|++.++.+- .++...+ .....+..|.+|+..++|.+|++.|..++.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44556677899999999988753 2322111 124568899999999999999999998774
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=69.43 E-value=6.2 Score=44.25 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+.+..++..+|+|..|+..++. ++++ +-+..++|+.|-+|+.+++|.+|++.|...+-
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN---------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555566666666665554 2222 22456778888888888888888888877653
No 46
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=67.55 E-value=20 Score=37.22 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=77.2
Q ss_pred HHHhccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHH
Q 009775 208 EREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGF 287 (526)
Q Consensus 208 ~~~~~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGF 287 (526)
+....+...+..+++| .|.+=|+| +++||.-+---|+|- ..+=..+..|-|||+|=+.+
T Consensus 142 ~r~~~~~~v~~~~g~~-----APafGmiG--TviGLI~mL~~L~dp--------------~~IG~~mAvAlvtTlYGv~~ 200 (271)
T PRK06926 142 ERHRKGRRIFEKAGEY-----APAWGMIG--TLVGLVLMLKNLNDP--------------STLGPNMAIALLTTLYGTLL 200 (271)
T ss_pred HHHHhHHHHHHHHHHH-----chHHHHHH--HHHHHHHHHHhcCCH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3334444556667777 78877777 678887654444441 22334789999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhhHHHHH
Q 009775 288 ANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYGEKMIR 367 (526)
Q Consensus 288 aYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEky~dk~~k 367 (526)
||+...=-+..++.-+.-- +..+.=-+-.+++|+..-+|.. |.|...+-|.+|-..+..+
T Consensus 201 Anlif~PiA~kL~~~~~~e------------------~~~~~~i~eGilai~~G~nP~~--ieekL~~~l~~~~~~~~~~ 260 (271)
T PRK06926 201 ANLVFLPIAAKLEEKTEEE------------------VFVKQVIIEGVIGVQSGQNPRI--LEEKLSVFSSKEDWTKEEE 260 (271)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhCCCCHHH--HHHHHHHhCCHHhhhhhHh
Confidence 9998877666555433311 1122223446788888888844 8888888887654444443
No 47
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=65.78 E-value=22 Score=33.98 Aligned_cols=143 Identities=18% Similarity=0.235 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc--cCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 009775 280 TTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYH--QKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQL 357 (526)
Q Consensus 280 s~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~--~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~l 357 (526)
-+.=-.|+-+++-+||.+-++.+..+...+...+..- ...+--+.+.+-..+ .+..+...
T Consensus 8 Ii~a~~~~G~~~a~~~~~R~~~L~~l~~~L~~L~~EI~y~~tpL~eal~~i~~~-----------------~~~~~~~~- 69 (170)
T PF09548_consen 8 IIAASSGIGFLYARRLKRRVRQLRELRRALQLLETEIRYGATPLPEALERISRR-----------------SEGPIGEF- 69 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----------------ccchHHHH-
Confidence 3334456666888999998888888777665555432 233233332221111 22233222
Q ss_pred HHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCCCCC---------CCCCcCCcchHHHHHHHHHHHHHHHHhhh--
Q 009775 358 REKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPS---------FEEPLVNYNQDAYRLQLKLFLYEVKQQQL-- 426 (526)
Q Consensus 358 rEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~P~---------~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~-- 426 (526)
+.+--.+|++++...| .+.|..|.-++.....=. +......+..|.+..|+.+.+++++.+..
T Consensus 70 ---f~~~a~~L~~~~~~~~---~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a 143 (170)
T PF09548_consen 70 ---FERVAERLEKNEGESF---AEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEA 143 (170)
T ss_pred ---HHHHHHHHHcCCCCCH---HHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345677777777 888888877766542110 00112456788889999999999987754
Q ss_pred hhhhhhhhhhccccChhHHhcc
Q 009775 427 LSGVRSFLKVYSSLYLSELATY 448 (526)
Q Consensus 427 l~~lRsyLKLYtti~l~KLAsf 448 (526)
--..+..-|||+++.+ +++.
T Consensus 144 ~~~~~~~~Klyr~LGv--l~G~ 163 (170)
T PF09548_consen 144 REEAKKKGKLYRSLGV--LGGL 163 (170)
T ss_pred HHHHHhcccHHHHHHH--HHHH
Confidence 4567889999999887 5544
No 48
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=65.27 E-value=30 Score=36.67 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=56.9
Q ss_pred HHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcccccCChhH
Q 009775 245 RVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYK-TKQYHQKSPQY 322 (526)
Q Consensus 245 Rvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r-~k~~~~ks~q~ 322 (526)
+-...-|||..|+..++. |.+++. +...++..|-||+.+++|.+|+..+...+----. ...+.....-+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~---------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN---------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 334457999999988766 444443 2457789999999999999999999998752110 00111111011
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCC
Q 009775 323 EQILKKNEQMYALLAICLSLCPQV 346 (526)
Q Consensus 323 d~i~K~~eqMyaLlAIc~~l~P~~ 346 (526)
.-.+..+.....+--|+.+.|..
T Consensus 81 -~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 81 -MKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred -HHhCCHHHHHHHHHHHHHhCCCC
Confidence 11233345555566678888854
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=64.40 E-value=8.9 Score=42.77 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=43.1
Q ss_pred HHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 245 RVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 245 Rvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.++...|++..|++.++. +++++. +...+|+.|.++++++|+.+|+..|...+-
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~---------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPI---------SADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456678999999998876 445442 334678999999999999999999998764
No 50
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.18 E-value=13 Score=25.01 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 281 TIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 281 ~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
+++..|-+|..++++..|+..|..++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999998753
No 51
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=62.73 E-value=6.3 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcccHHHHhhhccC
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQP 262 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~ 262 (526)
|+..|-++|+.+|||..|+++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567899999999999999987654
No 52
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.56 E-value=6.5 Score=41.40 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=45.5
Q ss_pred HHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
-.=+|+-||-|..|+|..+- |.++. -|...|--+|+||+=++||..||+.|-..|-
T Consensus 121 RAAAy~~Lg~~~~AVkDce~Al~iDp---------~yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 121 RAAAYSKLGEYEDAVKDCESALSIDP---------HYSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCh---------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 45689999999999997654 55543 4667788899999999999999999877664
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=60.93 E-value=11 Score=41.85 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCcc-cCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPID-ITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~Id-l~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
++.++.+++...|+|..|++.++.+- .+ +-+...++..|-+++..++|.+|+++|...+
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 220 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTAD---------PGNVDALLLKGDLLLSLGNIELALAAYRKAI 220 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45677888899999999999987742 22 2345677778888888888888888887765
No 54
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=60.22 E-value=16 Score=40.59 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
...+.|++...|+|..|+..++.+.... ++.....++..|-+|.-+++|.+|++.|..++
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 152 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLD-------DEGAAELLALRGLAYLGLGQLELAQKSYEQAL 152 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCC-------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456788999999999999887654211 22334455666666666666666666666554
No 55
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=59.55 E-value=17 Score=33.07 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
++|+|-..+--||++.+|+.+|+...-... -.++.-.+-+..+-+...++|+.+|++.+...|.
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p-----~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFP-----DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 678888888999999999999986432211 1223445556667788999999999999988775
No 56
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=59.50 E-value=14 Score=40.77 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
++---|++.+-||-..|++.++.-.-.+. - -+.-|--.+|..|+++|++++|.+|...|..++-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQS-E---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchh-h---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 55667999999999999999996332221 1 1223445589999999999999999999998664
No 57
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=59.47 E-value=1.1e+02 Score=33.75 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCcchHHHHHHHHHHHhhhh-H-HHHHHHHhccCC-ccc--ccCCccCCCC-chhhHhhhHHHHHHH-HHHHhhcccHHH
Q 009775 183 QAWNVYGVLNFLQALVEKSM-I-IQILEREKEGLE-QFT--ATDGYDYNGG-SNVLKVLGYFSMVGL-LRVHCLLGDYHT 255 (526)
Q Consensus 183 ~vW~~~~VLn~L~sLv~kS~-I-~e~L~~~~~g~~-~~~--~a~~~~~~g~-~~l~~mLGYFSlIGL-lRvh~LLGDY~~ 255 (526)
.+|+...+..-++.+++-+. + ++.|++..+-.. .+. +.+. ++ -+--|+-|.|-+.+| +-+|--||....
T Consensus 120 ~~~~l~~~~kq~~~~l~~~s~~~~d~l~~~sr~l~R~Fn~il~dR----~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l 195 (413)
T COG5600 120 EIWNLTVVKKQLYGLLELKSELNQDNLSKISRLLTRMFNSILNDR----SPALNPSKKVGLYYIANLLFQIYLRLGRFKL 195 (413)
T ss_pred HHHHHHhhHHHHHHHhcccchhhHhhHHHHHHHHHHHHHHhcCCc----CccCChhhHHHHHHHHHHHHHHHHHhccHHH
Confidence 47777778877777776433 2 233333322111 111 1111 11 235678887777765 578888998888
Q ss_pred HhhhccCccc-CCcc--cccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHH
Q 009775 256 GLKCLQPIDI-TQQG--VYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQM 332 (526)
Q Consensus 256 ALk~L~~Idl-~~k~--l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqM 332 (526)
+--++.+.+. +-.. +|. .+=.|...||.|-+||-.+.+.+|--.|...+++.-.. ++...+++
T Consensus 196 ~~n~lka~~~vs~~Di~~~~--~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l------------~~~n~~rI 261 (413)
T COG5600 196 CENFLKASKEVSMPDISEYQ--KSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWL------------ITRNRKRI 261 (413)
T ss_pred HHHHHHhcccccccccchhh--hcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhh------------hhcchhee
Confidence 7644444333 1122 222 24457788999999999999999998888877653222 11122222
Q ss_pred HH----HHHHHHhhCCCCcchhhHHHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccC
Q 009775 333 YA----LLAICLSLCPQVKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITP 393 (526)
Q Consensus 333 ya----LlAIc~~l~P~~~~lDe~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp 393 (526)
.. .-.+...+.|.+..|...-. -.-|..=...+..|+.+.| +..-..-.-+|+.-
T Consensus 262 l~~~ipt~Llv~~~~Ptk~~L~r~~~---~s~~~~LvkavrsGni~~~---~~~l~~ner~~~~~ 320 (413)
T COG5600 262 LPYYIPTSLLVNKFPPTKDLLERFKR---CSVYSPLVKAVRSGNIEDF---DLALSRNERKFAKR 320 (413)
T ss_pred hhHHhhHHHHhCCCCCchHHHHhccc---cchhHHHHHHHHcCCHHHH---HHHHHHhHHHHHHc
Confidence 22 21222334454411111110 0114444556889999999 87777777555553
No 58
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=59.01 E-value=9.1 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=35.7
Q ss_pred hhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhccc
Q 009775 427 LSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTH 468 (526)
Q Consensus 427 l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r 468 (526)
|..||.|++--.+++++-||.-++++++.++..|-.+.++.+
T Consensus 2 L~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 2 LQEIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGY 43 (69)
T ss_dssp CHHHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 567999999999999999999999999999999988888865
No 59
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.42 E-value=46 Score=31.95 Aligned_cols=43 Identities=30% Similarity=0.291 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCCCCCCC
Q 009775 351 ETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFE 399 (526)
Q Consensus 351 e~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~P~~~ 399 (526)
|++.+.+-|++-++|.+-.+|.+.+ -|...-|||+-|+||..+
T Consensus 70 et~~~~l~e~~~~~~~~AaRgee~~------~~p~~ks~~nr~vp~~gd 112 (170)
T COG4010 70 ETVSSDLPEQWIEKLKRAARGEEVH------RPPQTKSKFNRGVPPGGD 112 (170)
T ss_pred hcCchhhhHHHHHHHHHHhhccccc------CCcccccccCCCCCCCcc
Confidence 4555678899999999999999753 356777899999888653
No 60
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=56.88 E-value=7.6 Score=37.32 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCccc--CCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHH
Q 009775 227 GGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDI--TQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNK 304 (526)
Q Consensus 227 g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl--~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~ 304 (526)
..++-.++=-+| .++||-...||+..+.+-++-.+- .+. ....+.-.+-=|-|.++|+.|+|..|.+.|..
T Consensus 66 ~~~~~~~id~~l---~~irv~i~~~d~~~v~~~i~ka~~~~~~~----~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 66 CTSPGHKIDMCL---NVIRVAIFFGDWSHVEKYIEKAESLIEKG----GDWERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred cCCHHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 344545444444 567999999999999988877654 221 12445555777899999999999999999999
Q ss_pred HHH
Q 009775 305 ILL 307 (526)
Q Consensus 305 iL~ 307 (526)
++.
T Consensus 139 ~~~ 141 (177)
T PF10602_consen 139 SLS 141 (177)
T ss_pred cCc
Confidence 874
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=56.33 E-value=17 Score=34.89 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..++.+.+...|+|..|++.++.+ ..++.+ +-.....|..|-+|+.+++|..|+..|...+-
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFS------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355666777899999999999875 334322 11224579999999999999999999999874
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=56.13 E-value=10 Score=42.69 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=45.2
Q ss_pred HHhhcccHHHHhhhccCcccCCccccccccccee----hHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 246 VHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHI----TTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 246 vh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~V----s~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+.|+.|.|.+|++.+.. -..+|..+++|.- .++=.+|-+|++||||.+|.+.|-.++.
T Consensus 334 ~~~~~~~~Eea~~l~q~----al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQK----ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHhcchhHHHHHHHH----HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 46888999999998872 2334556666544 4566789999999999999999999875
No 63
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=56.00 E-value=23 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 280 TTIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 280 s~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
++...+|.+|.-+++|.+|.+.+..++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998864
No 64
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=54.85 E-value=17 Score=40.84 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+..++..+|||..|++.++. +++++. ++..++..|.+|..+++|.+|+..|...+-
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPD---------FIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCcc---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567789999999998876 444443 344567889999999999999999998875
No 65
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=54.77 E-value=18 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 281 TIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 281 ~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+.+-.|.+|+-++++.+|+++|..+|-
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467789999999999999999999874
No 66
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=54.28 E-value=53 Score=33.70 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
...+.+++.-.|++..|++.++.. ++++ -.+..++..|-+|...+++.+|++.|..++.
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADP---------QCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCc---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345666777888888888887653 2222 1345677888888888889998888888763
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=53.46 E-value=26 Score=35.59 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKI 305 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~i 305 (526)
...|..++...|++..|+..++. +++.+. -+..++..+++.|.+|+-.+++.+|++.|...
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45667788889999999998876 334332 24455567788999999999999999999886
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=51.62 E-value=25 Score=35.93 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=42.6
Q ss_pred HHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 246 VHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 246 vh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
++..+|++..|+..++. |+++++ +...++..|.+|+.+++|.+|+..|...|-
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPD---------MADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57788999999886654 344432 346789999999999999999999999875
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=51.45 E-value=27 Score=35.41 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=45.8
Q ss_pred HHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..+..++...|+|..|++.++. +++++.. ...+...|-+|.+.+|+.+|+..+...+-
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 3455677889999999998877 4555433 45677789999999999999999988764
No 70
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=51.23 E-value=20 Score=36.76 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..|..++...|+|..|++.++.+--... ..+.-...+++.+|-+|+.+++|.+|.+.|...+-
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPD----LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 4456677788999999888775322110 01111234667778888888888888888887653
No 71
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.72 E-value=31 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 009775 282 IYHYGFANLMLRRYVDAIREFN 303 (526)
Q Consensus 282 ~YyvGFaYlMlrRY~DAir~F~ 303 (526)
.|-.|..+-|.++|.+|+..|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4677999999999999999976
No 72
>PHA02053 hypothetical protein
Probab=49.63 E-value=21 Score=32.07 Aligned_cols=21 Identities=24% Similarity=0.895 Sum_probs=18.1
Q ss_pred HhhhHHHhhhcchhhhhhcccC
Q 009775 148 DMVDEFVYQFQSFCQYRAKMKN 169 (526)
Q Consensus 148 DiiDEFVYQfQsfc~yR~k~~~ 169 (526)
|||||-.|||..=| |.+|++.
T Consensus 3 eiid~lm~~yr~r~-~~gri~e 23 (115)
T PHA02053 3 EIIDELMYQYRERC-WSGRITE 23 (115)
T ss_pred hHHHHHHHHHHHHH-hccccCc
Confidence 79999999999888 7777764
No 73
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.24 E-value=34 Score=35.53 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=42.4
Q ss_pred HHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 246 VHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 246 vh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
=|++-|||..|...... |+--+.+.|+ +. -+|++|=|+.-+++|.||+.+|..+.
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~--~n----A~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYT--PN----AYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCccc--ch----hHHHHHHHHHhcccchHHHHHHHHHH
Confidence 47789999998877544 5554555554 33 46999999999999999999998854
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=48.43 E-value=27 Score=39.04 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=41.5
Q ss_pred HHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
+.+++...|++..|+..++. +++++.. ....++.|.++++++||.+|+..+...+
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~---------~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTR---------AAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------hhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34567889999999999987 5565532 2234556777888999999999988865
No 75
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=48.28 E-value=33 Score=34.81 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=54.3
Q ss_pred chhhHhhhHHHHH-----HHHHHHhhc-ccHHHHhhhccC-ccc-CCcccccccccceehHHHHHHHHHHHHhhHHHHHH
Q 009775 229 SNVLKVLGYFSMV-----GLLRVHCLL-GDYHTGLKCLQP-IDI-TQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIR 300 (526)
Q Consensus 229 ~~l~~mLGYFSlI-----GLlRvh~LL-GDY~~ALk~L~~-Idl-~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir 300 (526)
..+|...|-|... -+.+++--. ||+..|++..+. +++ ...+ .+.-...++=.+|-.+.-+++|.+|+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~----~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG----SPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC----ChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555543 344555555 899999887654 443 1111 112222344467788999999999999
Q ss_pred HHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhC
Q 009775 301 EFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLC 343 (526)
Q Consensus 301 ~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~ 343 (526)
+|..+...... ..+.|..-+-|.|-|+++.|+
T Consensus 177 ~~e~~~~~~l~-----------~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 177 IYEEVAKKCLE-----------NNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp HHHHHHHTCCC-----------HCTTGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc-----------ccccchhHHHHHHHHHHHHHH
Confidence 99998642111 112334445566656655666
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=48.21 E-value=25 Score=42.82 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
..|..++.-.|||..|++.++.+-- ..+-++...+..|-+|..++++.+|+.+|..++
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~--------~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLT--------REPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4567788899999999998876321 123356778889999999999999999998776
No 77
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.88 E-value=28 Score=37.45 Aligned_cols=61 Identities=18% Similarity=0.375 Sum_probs=42.1
Q ss_pred hhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhcccccccCCceeccCceeEEEe--CCeEEEecccccch
Q 009775 428 SGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYID--DNMIHVVESKPVKR 501 (526)
Q Consensus 428 ~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l~~~G~~~~~sdlDF~Id--~dmIhI~e~k~~r~ 501 (526)
.+|-|-=|||++|+.+.|+.++++|++.....- |+.++..-+.=+|| +..||-.++..-+.
T Consensus 306 hNlls~Skly~nisf~~Lg~ll~i~~ekaekia-------------a~MI~qeRmng~IDQ~egiihFe~~e~l~~ 368 (399)
T KOG1497|consen 306 HNLLSASKLYNNISFEELGALLKIDAEKAEKIA-------------AQMITQERMNGSIDQIEGIIHFEDREELPQ 368 (399)
T ss_pred HhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHH-------------HHHHhHHHhccchHhhcceEeecchhhhhh
Confidence 367788899999999999999999988775431 12222223344566 46899888554443
No 78
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=46.81 E-value=18 Score=34.97 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHhhcccHHHHhhhccCccc-CCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 244 LRVHCLLGDYHTGLKCLQPIDI-TQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 244 lRvh~LLGDY~~ALk~L~~Idl-~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..-+.--|||..|++.++.|.- .+.+-+. +. ..+.+|.||...++|.+|+..|...+-
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a--~~----A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYA--PQ----AQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTH--HH----HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHH--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445678999999999999875 3333222 22 356889999999999999999999653
No 79
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=45.87 E-value=20 Score=23.63 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcccHHHHhhhcc
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQ 261 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~ 261 (526)
+.+.|-++|...||..+|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998875
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=45.60 E-value=26 Score=33.65 Aligned_cols=58 Identities=12% Similarity=-0.014 Sum_probs=43.7
Q ss_pred HHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
+.++|...|+|..|+..++.+ +..+.+ +-.....+.+|-+|.++++|.+|+.++..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDT------PATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 446788999999999988763 222211 2335678899999999999999999877653
No 81
>PLN02161 beta-amylase
Probab=44.68 E-value=17 Score=40.99 Aligned_cols=32 Identities=28% Similarity=0.640 Sum_probs=25.8
Q ss_pred hHHHhHHHHHHHHhc-------------------CCcccCCchhHHHHhhhH
Q 009775 120 DSWDNYCSLFQVVLH-------------------GVVNMQLPNQWLWDMVDE 152 (526)
Q Consensus 120 ~Sw~nYc~LF~~lL~-------------------g~v~l~LPn~WlWDiiDE 152 (526)
=-|.-|.+||..+-+ +++++.||. |+|++.|.
T Consensus 151 YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~-WV~~~g~~ 201 (531)
T PLN02161 151 FKWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPL-WIREIGDV 201 (531)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCCH-HHHhhhcc
Confidence 369999999999974 456788887 99998654
No 82
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=44.14 E-value=33 Score=35.77 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=55.7
Q ss_pred CcchHHHHHHHHHHH----hhhhHHHHHHHHhc--------cCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcc
Q 009775 184 AWNVYGVLNFLQALV----EKSMIIQILEREKE--------GLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLG 251 (526)
Q Consensus 184 vW~~~~VLn~L~sLv----~kS~I~e~L~~~~~--------g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLG 251 (526)
-|-++-.-.-|.-+| +...|.+.|+.+-. +...++..++| .|..=|+| +++||.-
T Consensus 120 ~~~~~Fl~~gl~l~vdG~~~~~~i~~iLe~ei~~~~~~~~~~~~v~~~~g~~-----aPa~GiiG--tvlGLI~------ 186 (282)
T TIGR03818 120 HHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLKPAHALQKVADA-----LPGFGIVA--AVLGVVI------ 186 (282)
T ss_pred cchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CchhhHHH--HHHHHHH------
Confidence 344444444555555 33456665554432 22234444555 56555555 5666654
Q ss_pred cHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHH
Q 009775 252 DYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIRE 301 (526)
Q Consensus 252 DY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~ 301 (526)
+|.+++=+...+=..+..|-|+|+|=+++||++.-=-+..++.
T Consensus 187 -------~l~~l~~dp~~lG~~iA~Alv~TlyGv~lAn~i~~PiA~kl~~ 229 (282)
T TIGR03818 187 -------TMGSIDGPPEVLGVLIAAALVGTFLGILLAYGFVGPLAAALEQ 229 (282)
T ss_pred -------HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444432233344578999999999999999987655544443
No 83
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=44.00 E-value=24 Score=35.45 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=52.8
Q ss_pred HHHhhcccHHHHhhhccCccc-CCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCChhHH
Q 009775 245 RVHCLLGDYHTGLKCLQPIDI-TQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYE 323 (526)
Q Consensus 245 Rvh~LLGDY~~ALk~L~~Idl-~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d 323 (526)
.-...-|||..|++.++.+.= .+.+ +.-....|.+|.||+-++.|.+|+..|...+-- +. +.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-------~P---~~- 102 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------NP---TH- 102 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------Cc---CC-
Confidence 344567999999999988643 3322 222334789999999999999999999986531 11 11
Q ss_pred HHhhHHHHHHHHHHHH
Q 009775 324 QILKKNEQMYALLAIC 339 (526)
Q Consensus 324 ~i~K~~eqMyaLlAIc 339 (526)
...+..+-++++|
T Consensus 103 ---~~~~~a~Y~~g~~ 115 (243)
T PRK10866 103 ---PNIDYVLYMRGLT 115 (243)
T ss_pred ---CchHHHHHHHHHh
Confidence 2557777777777
No 84
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.78 E-value=26 Score=29.86 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=40.7
Q ss_pred HhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 247 HCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 247 h~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
++..|||.+|++.|.. .|..+...=..-...+-...-..|..+..++++.+|+.++...+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4568999999998876 455332111110112222345578889999999999999999875
No 85
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=39.31 E-value=47 Score=23.25 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 282 IYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 282 ~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+..+|-+|.=+++|..||.+|...|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56789999999999999999999774
No 86
>PLN02803 beta-amylase
Probab=38.62 E-value=24 Score=40.03 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=26.5
Q ss_pred HHhHHHhHHHHHHHHhc---------------C----CcccCCchhHHHHhhhH
Q 009775 118 RIDSWDNYCSLFQVVLH---------------G----VVNMQLPNQWLWDMVDE 152 (526)
Q Consensus 118 R~~Sw~nYc~LF~~lL~---------------g----~v~l~LPn~WlWDiiDE 152 (526)
+.=-|.-|.+||..+-+ | .+++.||. |+|++.|.
T Consensus 139 ~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~-WV~e~~~~ 191 (548)
T PLN02803 139 MKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP-WVLEEMSK 191 (548)
T ss_pred CcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH-HHHHhhhc
Confidence 33469999999999975 3 45678887 99998765
No 87
>PF08561 Ribosomal_L37: Mitochondrial ribosomal protein L37; InterPro: IPR013870 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes yeast MRPL37 a mitochondrial ribosomal protein [].
Probab=38.58 E-value=10 Score=32.69 Aligned_cols=27 Identities=26% Similarity=0.732 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCcccCCch----hHHHHhhhH
Q 009775 126 CSLFQVVLHGVVNMQLPN----QWLWDMVDE 152 (526)
Q Consensus 126 c~LF~~lL~g~v~l~LPn----~WlWDiiDE 152 (526)
|.=+|++-+|+.+.-||+ .|||+++|.
T Consensus 14 l~GlNi~K~g~DP~al~D~EYP~WLW~lld~ 44 (85)
T PF08561_consen 14 LKGLNILKDGKDPVALPDSEYPEWLWTLLDP 44 (85)
T ss_pred eeeeeeecCCCCCccCCcchhhHHHHHhcCC
Confidence 333566667887777887 799999987
No 88
>PLN02905 beta-amylase
Probab=38.58 E-value=23 Score=40.91 Aligned_cols=34 Identities=32% Similarity=0.687 Sum_probs=26.4
Q ss_pred HHhHHHhHHHHHHHHhc---------------C----CcccCCchhHHHHhhhH
Q 009775 118 RIDSWDNYCSLFQVVLH---------------G----VVNMQLPNQWLWDMVDE 152 (526)
Q Consensus 118 R~~Sw~nYc~LF~~lL~---------------g----~v~l~LPn~WlWDiiDE 152 (526)
+.=-|.-|.+||+.+-. | .+++.||. |+|++.|.
T Consensus 318 ~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~-WV~e~g~~ 370 (702)
T PLN02905 318 QEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPH-WVAEIGRS 370 (702)
T ss_pred CcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH-HHHHhhhc
Confidence 33469999999999985 3 45678887 99998764
No 89
>PLN02705 beta-amylase
Probab=38.53 E-value=22 Score=40.94 Aligned_cols=33 Identities=27% Similarity=0.716 Sum_probs=25.6
Q ss_pred HHhHHHhHHHHHHHHhc---------------C----CcccCCchhHHHHhhh
Q 009775 118 RIDSWDNYCSLFQVVLH---------------G----VVNMQLPNQWLWDMVD 151 (526)
Q Consensus 118 R~~Sw~nYc~LF~~lL~---------------g----~v~l~LPn~WlWDiiD 151 (526)
+.=-|.-|.+||..+-. | .+++.||. |+|++.+
T Consensus 300 ~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~-WV~e~g~ 351 (681)
T PLN02705 300 QKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQ-WVLEIGK 351 (681)
T ss_pred CcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCH-HHHHhcc
Confidence 33369999999999874 2 45678887 9999874
No 90
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=38.48 E-value=3.7e+02 Score=25.92 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=64.2
Q ss_pred HHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCChhHHH-
Q 009775 246 VHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQ- 324 (526)
Q Consensus 246 vh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d~- 324 (526)
...-.|+|..|.++-+-+-+ .-+=...-+|-.|-|+=.+++|.+||.+|...+.- ..-.-+++|+-.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----~~ddp~~~~~ag~ 111 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----KIDAPQAPWAAAE 111 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCchHHHHHHH
Confidence 34568999999987654221 22223456788999999999999999999987642 112234445432
Q ss_pred ---HhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhhHHHHHhhccC
Q 009775 325 ---ILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYGEKMIRMQRYD 372 (526)
Q Consensus 325 ---i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEky~dk~~kmq~Gd 372 (526)
...+.+.-...+-.++..|-. .+-.+.||+|=..-++.|..|+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~-----~~~~~~l~~~A~~~L~~l~~~~ 157 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGE-----VSEHQILRQRAEKMLQQLSDRS 157 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcc-----ChhHHHHHHHHHHHHHHhhcCC
Confidence 122333333333344444421 1234566666655566666553
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=38.44 E-value=52 Score=39.38 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=38.4
Q ss_pred HhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 247 HCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 247 h~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
..-.|-|..|++.+.+|-=+.. -.| .-++|-.|-||||+++|..|+-.+..+|.
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~------~~~-~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREG------YQN-AFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCcc------ccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3345667777777766543331 112 55788899999999999999999988886
No 92
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=38.05 E-value=1e+02 Score=34.09 Aligned_cols=78 Identities=19% Similarity=0.117 Sum_probs=62.1
Q ss_pred chhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCccc-CCcccccccccceehHHHHHHHHHHHHhhH-------HHHHH
Q 009775 229 SNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDI-TQQGVYTSVIGSHITTIYHYGFANLMLRRY-------VDAIR 300 (526)
Q Consensus 229 ~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl-~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY-------~DAir 300 (526)
.+-.+++.-+.+-=+.=.|+.++||..|.+....+.= ++ =.|-...|-.|-||.|++|- .+|..
T Consensus 297 q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~ 368 (468)
T PF10300_consen 297 QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEE 368 (468)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHH
Confidence 4557777777777777789999999999988776432 33 13556679999999999999 99999
Q ss_pred HHHHHHHHHHhhcc
Q 009775 301 EFNKILLYIYKTKQ 314 (526)
Q Consensus 301 ~F~~iL~yi~r~k~ 314 (526)
.|..+=-+++|.+.
T Consensus 369 l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 369 LFRKVPKLKQKKAG 382 (468)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999988876554
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=37.97 E-value=53 Score=40.15 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=53.2
Q ss_pred hHhhhHHHHHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 232 LKVLGYFSMVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 232 ~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.....|...+.+-.++.-.|++..|++.++. +++++. +...++..|.+|+..++|.+|++.|..+|-
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~---------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT---------DSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445677778888888999999999999876 333332 335678899999999999999999999873
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.40 E-value=85 Score=32.92 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=62.3
Q ss_pred HHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCChh
Q 009775 242 GLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQ 321 (526)
Q Consensus 242 GLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q 321 (526)
-|.-+++.+|||..|.=++|.+-+..+ |.++--+||+|--=+-.+.=.+...+| -
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~~P------------------~n~l~f~rlae~~Yt~gg~eN~~~ark-------y 213 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLIQP------------------FNPLYFQRLAEVLYTQGGAENLELARK-------Y 213 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcCC------------------CcHHHHHHHHHHHHHHhhHHHHHHHHH-------H
Confidence 466788999999999999999887443 667777888876555555444444444 3
Q ss_pred HHHHhhHHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 009775 322 YEQILKKNE-QMYALLAICLSLCPQVKHVEETVNSQLREK 360 (526)
Q Consensus 322 ~d~i~K~~e-qMyaLlAIc~~l~P~~~~lDe~I~~~lrEk 360 (526)
|.+-.|-+. .+.+|+.||+.-+ . |.+.+...++++
T Consensus 214 y~~alkl~~~~~ral~GI~lc~~--~--la~~sk~~~k~~ 249 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGIYLCGS--A--LAQISKAELKRK 249 (289)
T ss_pred HHHHHHhChHhHHHHHHHHHHHH--H--HHHHhHHHHhhh
Confidence 455667666 8999999986543 2 666666665544
No 95
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=37.26 E-value=76 Score=29.41 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRR-------YVDAIREFNKILLYI 309 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrR-------Y~DAir~F~~iL~yi 309 (526)
+...+..++..+|+|..|++.++. +++.+ -+...++..|.+|.=+++ +..|+..+...+-+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNP---------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence 456777888999999999997654 33322 245567788888877665 445555554444443
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=37.16 E-value=57 Score=39.36 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccC
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQK 318 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~k 318 (526)
+...|+..+.-.|++..|+.+++. .+ ..++-+++.+|+.|+-|++.+++.||..+ ..+--+....+..--
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~-~l-------~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEE-HL-------KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-HH-------HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 466788888899999999999883 11 23556789999999999999999999998 444433333322222
Q ss_pred ChhHHHHhhHHHHHHHH
Q 009775 319 SPQYEQILKKNEQMYAL 335 (526)
Q Consensus 319 s~q~d~i~K~~eqMyaL 335 (526)
.+-++.|...-++-+||
T Consensus 103 e~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 103 EHICDKILLYGENKLAL 119 (906)
T ss_pred HHHHHHHHhhhhhhHHH
Confidence 23444455544444444
No 97
>PLN02801 beta-amylase
Probab=36.63 E-value=25 Score=39.64 Aligned_cols=32 Identities=41% Similarity=0.891 Sum_probs=24.4
Q ss_pred hHHHhHHHHHHHHhc---------------C----CcccCCchhHHHHhhhH
Q 009775 120 DSWDNYCSLFQVVLH---------------G----VVNMQLPNQWLWDMVDE 152 (526)
Q Consensus 120 ~Sw~nYc~LF~~lL~---------------g----~v~l~LPn~WlWDiiDE 152 (526)
=.|.-|.+||..+-+ | .|++.||. |+|++.|.
T Consensus 71 YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~-WV~~~g~~ 121 (517)
T PLN02801 71 YDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ-WVRDVGDS 121 (517)
T ss_pred cCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH-HHHHhhcc
Confidence 359999999999974 3 34566776 99998654
No 98
>PLN00197 beta-amylase; Provisional
Probab=36.34 E-value=26 Score=39.81 Aligned_cols=32 Identities=28% Similarity=0.741 Sum_probs=25.3
Q ss_pred hHHHhHHHHHHHHhc---------------C----CcccCCchhHHHHhhhH
Q 009775 120 DSWDNYCSLFQVVLH---------------G----VVNMQLPNQWLWDMVDE 152 (526)
Q Consensus 120 ~Sw~nYc~LF~~lL~---------------g----~v~l~LPn~WlWDiiDE 152 (526)
=-|.-|.+||..+-. | .+++.||. |+|++.|.
T Consensus 161 YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~-WV~~~g~~ 211 (573)
T PLN00197 161 YNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK-WVVEEVDK 211 (573)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH-HHHHhhcc
Confidence 369999999999975 3 45677887 99998654
No 99
>PRK12544 RNA polymerase sigma factor; Provisional
Probab=35.91 E-value=2.5e+02 Score=27.20 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=31.3
Q ss_pred hccccChhHHhcccCCChhHHHHHHHHHhhccccc
Q 009775 436 VYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAV 470 (526)
Q Consensus 436 LYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l 470 (526)
-|..++.+.+|..|++++.++++.|..-+++.|..
T Consensus 161 ~~~g~s~~EIAe~lgis~~tV~~~l~RAr~~Lr~~ 195 (206)
T PRK12544 161 EFIELETNEICHAVDLSVSNLNVLLYRARLRLREC 195 (206)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999888887753
No 100
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=35.63 E-value=96 Score=37.80 Aligned_cols=58 Identities=7% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+.+..++..+|++..|++.++. +.++ +.+...++..|.++..++++.+|+.+|...|.
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~---------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELE---------PNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556666666666666554 2222 33445667777777777777777777776654
No 101
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.54 E-value=38 Score=35.59 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=30.8
Q ss_pred cccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 274 VIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 274 V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.-+.+|+..++.||++++-++|++|+-++...|-
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4578999999999999999999999999988764
No 102
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=35.36 E-value=47 Score=25.40 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHH
Q 009775 283 YHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETV 353 (526)
Q Consensus 283 YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I 353 (526)
|-.|-+++-.++|.+|+++|..++- ..+ .+...+..++.|+.-. .+.++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~----------~~P-------~~~~a~~~lg~~~~~~---g~~~~A~ 51 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK----------QDP-------DNPEAWYLLGRILYQQ---GRYDEAL 51 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC----------CST-------THHHHHHHHHHHHHHT---T-HHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH----------HCC-------CCHHHHHHHHHHHHHc---CCHHHHH
Confidence 5678899999999999999999873 111 2455566666665544 2356655
No 103
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=34.54 E-value=52 Score=37.75 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=29.1
Q ss_pred HHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
..|..++...|++..|++.++. +++++. +....++.|-+|..+++|.+|+..|..++
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~---------~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPD---------LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555666777777666554 122221 22334445555555555555555555444
No 104
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=34.34 E-value=45 Score=33.15 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
|+.+.+-.|++..|..+|+...- ..+-.-.+....|.+|+-++|+.+|+..|...+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLK--------AAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHH--------H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHH--------HCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 33344455666665555444221 111122344556777777777777777776644
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.63 E-value=52 Score=29.72 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHH
Q 009775 236 GYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNK 304 (526)
Q Consensus 236 GYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~ 304 (526)
+.++.+.|.+.++-.|||..|++.++.+--+.+. +.-.--..+.++.+++-.++|.+|+.++..
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-----~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPD-----PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5677788899999999999999999885443211 121222345678999999999999999865
No 106
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=33.03 E-value=80 Score=32.56 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=66.1
Q ss_pred ccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHH
Q 009775 212 EGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLM 291 (526)
Q Consensus 212 ~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlM 291 (526)
.+..-.+..+++ .|+.=++| +++||..+---++| ...+=..+..|-|||+|=+.+||+.
T Consensus 138 ~~~~~l~~~a~~-----AP~lGllG--TVlGLI~~~~~l~~--------------p~~lg~gIa~ALvtT~yGl~~An~~ 196 (254)
T PRK06743 138 KGAALLDKIGDF-----APAWGMIG--TLIGLIIMLQNLQD--------------TSQIGTGMAVAMLTTLYGSVLANMI 196 (254)
T ss_pred hHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHhHccCC--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 66665666 57777754333332 2234447889999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHh
Q 009775 292 LRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKY 361 (526)
Q Consensus 292 lrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEky 361 (526)
..=.+..++..+... ...+.--|=.+++|.-.-+|- .|.|...+-+.++-
T Consensus 197 ~~Pia~kL~~~~~~e------------------~~~~~~iiegi~~i~~g~nPr--~i~~kL~~~l~~~~ 246 (254)
T PRK06743 197 AIPLAEKVYRGIEDL------------------YTEKKFVIEAISELYRGQIPS--KLKLKLDTYVYETK 246 (254)
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCChH--HHHHHHHHhCCHHH
Confidence 855544444333322 222334455677777777883 48887777776543
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.08 E-value=80 Score=36.18 Aligned_cols=75 Identities=17% Similarity=0.362 Sum_probs=54.8
Q ss_pred HHHHHHHhhcccHHHHhhhccC-cccCC--cc--------------------cccc---cccceehHHHHHHHHHHHHhh
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQP-IDITQ--QG--------------------VYTS---VIGSHITTIYHYGFANLMLRR 294 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~-Idl~~--k~--------------------l~~~---V~~c~Vs~~YyvGFaYlMlrR 294 (526)
+||==|.-|.|+|..|+.+++. +..++ -. -|.| .-+-+|.+=|.+|.|||=++-
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 3444567789999999988875 22221 11 2333 336689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 009775 295 YVDAIREFNKILLYIYKTKQY 315 (526)
Q Consensus 295 Y~DAir~F~~iL~yi~r~k~~ 315 (526)
|.||++.|...|.-..+++..
T Consensus 514 ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred HHHHHHHHHHHHHhhhccccc
Confidence 999999999999865555544
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=31.93 E-value=1.1e+02 Score=28.19 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHH-------HHhhHHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANL-------MLRRYVDAIREFNKILLY 308 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYl-------MlrRY~DAir~F~~iL~y 308 (526)
+...|-.++.-+|++.+|++.++. +.+++ -+...+..+|.+|. -++++..|...|...+.+
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNP---------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 556677788889999999998865 33332 22345566677776 667777776666665544
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=31.41 E-value=46 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.0
Q ss_pred cceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 276 GSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 276 ~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+-++-++|-.|.|.+-++++..|.+.|..++.
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 45678999999999999999999999987663
No 110
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=30.19 E-value=42 Score=30.68 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=23.7
Q ss_pred hhhhhhhhhccccChhHHhcccCCChhHHHHH
Q 009775 428 SGVRSFLKVYSSLYLSELATYMEVDEPTLRTI 459 (526)
Q Consensus 428 ~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~ 459 (526)
..++.--+-|++|+++.+|.+|+++++++...
T Consensus 86 ~i~~~i~~aY~sIs~~~la~~Lg~~~~el~~~ 117 (143)
T PF10075_consen 86 RIAHLISKAYSSISLSDLAEMLGLSEEELEKF 117 (143)
T ss_dssp HHHHHHHHH-SEE-HHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhHcCHHHHHHHhCCCHHHHHHH
Confidence 45566678899999999999999998877655
No 111
>PRK08456 flagellar motor protein MotA; Validated
Probab=30.01 E-value=1.6e+02 Score=30.11 Aligned_cols=96 Identities=15% Similarity=0.217 Sum_probs=62.4
Q ss_pred chhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 229 SNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 229 ~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
.|+.=++| +++||...---++ +...+=..+..|-|||+|=+..||++..-.+..++....-..
T Consensus 153 AP~lGllG--TVlGlI~~~~~l~--------------dp~~lg~gIa~ALvtT~yGl~vAn~~~~Pia~kl~~~~~~e~- 215 (257)
T PRK08456 153 CPTMGLVG--AVMGLMLALQKLD--------------NPAEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDII- 215 (257)
T ss_pred hhHHHHHH--HHHHHHHHHHhcC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 67666666 5778876533332 222334478899999999999999999888877765544222
Q ss_pred HHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 009775 309 IYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREK 360 (526)
Q Consensus 309 i~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEk 360 (526)
..+.--+=.+++|+-.-+|. .+.|...+-+.++
T Consensus 216 -----------------~~~~~i~egi~~i~~g~~P~--~i~~~L~~~l~~~ 248 (257)
T PRK08456 216 -----------------KEKTVILEGILGIAEGANPR--DLEEKLLNYLSPG 248 (257)
T ss_pred -----------------HHHHHHHHHHHHHhCCCCHH--HHHHHHHHhCCch
Confidence 11223334567777777784 3777777766543
No 112
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=29.63 E-value=70 Score=36.73 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=44.5
Q ss_pred HHHHHHhhcccHHHHhhhccCcc-cCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 242 GLLRVHCLLGDYHTGLKCLQPID-ITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 242 GLlRvh~LLGDY~~ALk~L~~Id-l~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.|.+++.-+|+|..|++.++.+- .++ -+....+..|-++..++|+.+|+..|...+-
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P---------~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKG---------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc---------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35678888999999999986532 222 2345566789999999999999999999774
No 113
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.50 E-value=75 Score=30.61 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccC
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQK 318 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~k 318 (526)
+||-++++...++|.+.+-.+|+-+.+-+. ++++.+ -.-|.-++--|+|.||+|+|..+..- ...+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP----~~~e~d----~~dg~l~i~rg~w~eA~rvlr~l~~~---~~~~--- 77 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRP----NLKELD----MFDGWLLIARGNYDEAARILRELLSS---AGAP--- 77 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----Cccccc----hhHHHHHHHcCCHHHHHHHHHhhhcc---CCCc---
Confidence 578888999999999999998888876432 223322 24688899999999999999997631 1110
Q ss_pred ChhHHHHhhHHHHHHHHHHHHHhhCC
Q 009775 319 SPQYEQILKKNEQMYALLAICLSLCP 344 (526)
Q Consensus 319 s~q~d~i~K~~eqMyaLlAIc~~l~P 344 (526)
-.--+|+|+|+..--
T Consensus 78 -----------p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 78 -----------PYGKALLALCLNAKG 92 (153)
T ss_pred -----------hHHHHHHHHHHHhcC
Confidence 123478999987763
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=28.31 E-value=55 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=28.7
Q ss_pred cceehHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 276 GSHITTIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 276 ~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
+-+....+..|.+|+.++||.+|+.+|...+..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l 102 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL 102 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999999987753
No 115
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=1.5e+02 Score=31.62 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKIL 306 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL 306 (526)
+-||-|+....||-.+|-+..+.+|=. -+..+.. .-.+++.-...|.|+--..|+.|.|.|..|+
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~-q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGL-QGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH-Hhhhhcc-chhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 447888889999998888888866620 1111111 1234555556677777777888888775544
No 116
>PRK15331 chaperone protein SicA; Provisional
Probab=27.91 E-value=1.1e+02 Score=29.74 Aligned_cols=124 Identities=12% Similarity=0.174 Sum_probs=72.3
Q ss_pred ccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhH
Q 009775 273 SVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEET 352 (526)
Q Consensus 273 ~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~ 352 (526)
.|+.--..-+|-.|+-+.--+||.||.+.|.-.++|=.-...|.-.-.---|+.|.-++...+-++|..+.+..-+ ..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~ 108 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PV 108 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--cc
Confidence 3556666778999999999999999999999888751111222211111234567777777777778777763200 01
Q ss_pred HHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCCCCCCCCCcCCcchHHHHHHHHHHHHHHHHh
Q 009775 353 VNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQ 424 (526)
Q Consensus 353 I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q 424 (526)
. |.-+.. |+-|+.+.= ++.|.-+.-+ | .....+...+..|+.++..
T Consensus 109 f-------~agqC~-l~l~~~~~A---~~~f~~a~~~------~---------~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 109 F-------FTGQCQ-LLMRKAAKA---RQCFELVNER------T---------EDESLRAKALVYLEALKTA 154 (165)
T ss_pred c-------hHHHHH-HHhCCHHHH---HHHHHHHHhC------c---------chHHHHHHHHHHHHHHHcc
Confidence 1 223333 333455544 6666665541 1 1334455566666666544
No 117
>PRK12482 flagellar motor protein MotA; Provisional
Probab=27.47 E-value=1e+02 Score=32.38 Aligned_cols=70 Identities=6% Similarity=0.068 Sum_probs=46.4
Q ss_pred ccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHH
Q 009775 212 EGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLM 291 (526)
Q Consensus 212 ~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlM 291 (526)
.+...+...++| .|..=|+| +++||.-+---|+| ....+=..+..|-|+|+|=+.+||++
T Consensus 160 ~~a~v~~~~a~~-----aPa~GiiG--tvlGLI~mL~~L~d-------------~p~~IG~~iAvALvtTfYGv~lAn~i 219 (287)
T PRK12482 160 QPSRSLQRIAEA-----MPGFGICA--AVLGIIITMQSIDG-------------SIAEIGLKVAAALVGTFLGVFICYCL 219 (287)
T ss_pred hHHHHHHHHHHH-----chHHHHHH--HHHHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666 77777777 67777654333333 12233347899999999999999999
Q ss_pred HhhHHHHHHH
Q 009775 292 LRRYVDAIRE 301 (526)
Q Consensus 292 lrRY~DAir~ 301 (526)
..=-+..++.
T Consensus 220 ~~PiA~kL~~ 229 (287)
T PRK12482 220 MDPLANAMEQ 229 (287)
T ss_pred HHHHHHHHHH
Confidence 8766655544
No 118
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=26.33 E-value=81 Score=38.44 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=45.6
Q ss_pred HHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009775 243 LLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLY 308 (526)
Q Consensus 243 LlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~y 308 (526)
|-.+++-.|++..|+++++. +++ .+-+..+.+..|.+|+.++++.+|+..|..++--
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l---------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKG---------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33456678999999998775 233 3455678999999999999999999999998853
No 119
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=25.56 E-value=1.1e+02 Score=29.61 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhH-----------HHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRY-----------VDAIREFNKIL 306 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY-----------~DAir~F~~iL 306 (526)
+.+.+...|-..|||..|+..++. |+..+.+- .++ -.+|..|.|++.+-+= .+|++.|..++
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~--~~~----~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP--KAD----YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--THH----HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--chh----hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 345566678899999999999998 45544331 122 3589999998877432 25555555544
No 120
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=25.53 E-value=2.2e+02 Score=26.64 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhhHHHHHhhccChhh
Q 009775 296 VDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYGEKMIRMQRYDDEA 375 (526)
Q Consensus 296 ~DAir~F~~iL~yi~r~k~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEky~dk~~kmq~Gd~e~ 375 (526)
.+|+++|..|+.|+.-... +...+ ..+-+..++-.|+. .| ..-||-..+.+|-..++--. .....
T Consensus 20 ~~A~~iF~~Il~ymgd~~~---~~~~~-----~~~l~~~i~~~~~~-~~--~LrDEiy~QLiKQtt~Np~~----~s~~r 84 (144)
T smart00139 20 KEAVKIFKAILKFMGDLPL---PKPDS-----HLDLVQFILQKGLA-HP--ELRDEIYCQLIKQLTDNPSR----QSEER 84 (144)
T ss_pred HHHHHHHHHHHHHhcCCCC---CCcch-----HHHHHHHHHHHHhc-cH--HHHHHHHHHHHHHHhCCCCc----hHHHH
Confidence 5899999999999864321 11111 23445555666654 33 34688888777765541110 01122
Q ss_pred hcchHhhhhhcCCCcccCCCCCCCCCcCCcchHHHHHHHHHHHHHHHH
Q 009775 376 FSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQ 423 (526)
Q Consensus 376 f~~~~elF~~acPKFIsp~~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~ 423 (526)
- |+|+.-||. +..| .+.+..-++.|+.....
T Consensus 85 g---W~Ll~l~~~-~FpP-------------S~~l~~yL~~~l~~~~~ 115 (144)
T smart00139 85 G---WELLYLCTS-LFPP-------------SERLLPYLLQFLSRRAD 115 (144)
T ss_pred H---HHHHHHHHh-HcCC-------------hHHHHHHHHHHHHhcCC
Confidence 3 999999998 4443 22344455666655443
No 121
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=24.79 E-value=97 Score=26.70 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=37.2
Q ss_pred hhhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhccc
Q 009775 426 LLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTH 468 (526)
Q Consensus 426 ~l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r 468 (526)
.|-.||.||-+...+++.-||.-++.+++.++..|-..-.+.|
T Consensus 3 ~L~qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGk 45 (78)
T PRK15431 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGK 45 (78)
T ss_pred cHHHHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999999999998876655544
No 122
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=24.67 E-value=85 Score=31.85 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHhhcccHHHHhhhccCcccCCcccccccccceeh-HHHHHHHHHHHHhhHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHIT-TIYHYGFANLMLRRYVDAIREFNK 304 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs-~~YyvGFaYlMlrRY~DAir~F~~ 304 (526)
.-+.++++.+|+|..|++.++.+--.. +-...+.-.+. .+--.|-|+|.++.+..|-+.|..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~--l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKC--LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTC--CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHh--hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456678999999999999998753211 10111111232 334678899999999999888877
No 123
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=23.84 E-value=66 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcccHHHHhhhccCccc
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDI 265 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl 265 (526)
.++|.+++.-.|++..|.++++.+--
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999999999998765
No 124
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=23.80 E-value=2e+02 Score=31.65 Aligned_cols=134 Identities=9% Similarity=0.053 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhcccHHHHhhhccCcccCCcccccc-cccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 009775 237 YFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTS-VIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQY 315 (526)
Q Consensus 237 YFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~-V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~ 315 (526)
||=..-|.++|-.++-+..+-..+.+++-.. +.+++ ..+-.|+..||+|-.+|.-..|.+|+..++..+...-.....
T Consensus 163 ~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~-~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~ 241 (394)
T KOG2688|consen 163 LYIVNQLFQIYFRIEKLLLCKNLIRAFDQSG-SDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLK 241 (394)
T ss_pred HHHHHHHHHHHHHHhhHHHhHHHHHHhhccc-cchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHh
Confidence 4445678899999999999988888877643 33333 457788899999999999999999999888766543222211
Q ss_pred ccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcC
Q 009775 316 HQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYAC 387 (526)
Q Consensus 316 ~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~ac 387 (526)
+..+-.-.|..+.++ +.-.|.+..+|.-- ..+|.+=...++.|+...| ++.-..-.
T Consensus 242 --------n~~~iliylip~~~l-lg~~Pt~~lL~~~~----~~~~~~lv~aVr~Gnl~~f---~~al~~~E 297 (394)
T KOG2688|consen 242 --------NKRLILIYLIPTGLL-LGRIPTKELLDFYT----LDKYSPLVQAVRSGNLRLF---DLALADNE 297 (394)
T ss_pred --------hhhhHHHHHhHHHHH-hccCcchhhHhHhh----HHhHHHHHHHHHhccHHHH---HHHHhhhH
Confidence 111111122222222 22246443333222 4467788888999999988 66555544
No 125
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=22.88 E-value=1.2e+02 Score=23.89 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 282 IYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 282 ~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.||++.++.=++.|..|.+....+|-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 69999999999999999998888774
No 126
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.32 E-value=66 Score=27.38 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHhhcccHHHHhhhccC-ccc
Q 009775 234 VLGYFSMVGLLRVHCLLGDYHTGLKCLQP-IDI 265 (526)
Q Consensus 234 mLGYFSlIGLlRvh~LLGDY~~ALk~L~~-Idl 265 (526)
.+.| +++.+.++|..+|++..|+++++. |++
T Consensus 39 ~~~~-all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 39 GLAY-ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444 799999999999999999999875 444
No 127
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=22.20 E-value=1.1e+02 Score=35.75 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=45.5
Q ss_pred HHHHHHHhhcccHHHHhhhccCc-ccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 241 VGLLRVHCLLGDYHTGLKCLQPI-DITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 241 IGLlRvh~LLGDY~~ALk~L~~I-dl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
.+|..++.-.|++..|+..++.+ +..+ -+.. ++-+|.++..++++.+|+..+..++-
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P---------~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAP---------DKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 47778888999999999999874 3322 2333 77789999999999999999988775
No 128
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.56 E-value=8.4e+02 Score=27.49 Aligned_cols=176 Identities=19% Similarity=0.183 Sum_probs=107.9
Q ss_pred HHHHHHHHhhcccHHHHhhhccCcccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccccCC
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKS 319 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ks 319 (526)
+..|||-..--|-|.+|-+.+.-...-.. -+..=.-...||.|--.+.-..|.+|-++|.+.+- ++
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~----~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r----------ka 277 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEA----ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR----------KA 277 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccc----cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH----------hC
Confidence 56788888888889999887765443110 11122335789999999999999999999999873 56
Q ss_pred hhHHHHhhHHHHHHHHHHHHHhhCCCCcchhhHH---HHHHHH---HhhHHHHHhhccChhhhcchHhhhhhcCCCcccC
Q 009775 320 PQYEQILKKNEQMYALLAICLSLCPQVKHVEETV---NSQLRE---KYGEKMIRMQRYDDEAFSIYDELFSYACPKFITP 393 (526)
Q Consensus 320 ~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I---~~~lrE---ky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp 393 (526)
+|.-.+. ..|-...+.||..|--+. |+|.. +..++. -|-+=-.....||...| ++.-..--+||.+-
T Consensus 278 pq~~alG--f~q~v~k~~ivv~ll~ge--iPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF---~~~leq~k~~f~~D 350 (493)
T KOG2581|consen 278 PQHAALG--FRQQVNKLMIVVELLLGE--IPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKF---NETLEQFKDKFQAD 350 (493)
T ss_pred cchhhhh--HHHHHHHHHHHHHHHcCC--CcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHhhC
Confidence 6644432 122333344454444332 44322 111111 24444455778999998 88877777777764
Q ss_pred CCCCCCCCcCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccChhHHhcccCCChhH
Q 009775 394 SAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPT 455 (526)
Q Consensus 394 ~~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~l~~lRsyLKLYtti~l~KLAsfldvd~~~ 455 (526)
.. ..-..++--.+- =..||.-==-|+.|++.-.|.-|.+|.++
T Consensus 351 ~t----------y~LivRLR~NVI---------kTgIR~ISlsYSRISl~DIA~kL~l~See 393 (493)
T KOG2581|consen 351 GT----------YTLIVRLRHNVI---------KTGIRKISLSYSRISLQDIAKKLGLNSEE 393 (493)
T ss_pred Cc----------chHHHHHHHHHH---------HHhhhheeeeeeeccHHHHHHHhcCCCch
Confidence 21 111222211111 13455555579999999999999987666
No 129
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=21.12 E-value=74 Score=28.50 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhhHHHHHhhccChhhhcchHhhhhh
Q 009775 323 EQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSY 385 (526)
Q Consensus 323 d~i~K~~eqMyaLlAIc~~l~P~~~~lDe~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~ 385 (526)
+.++..+-..|.-+|=-....|++ ++.+|...+.- -|.+||.+.. .++|.+
T Consensus 33 ~~l~~itK~LYp~IA~k~~TT~s~--VERaIR~aI~~-------~w~~g~~~~l---~~i~g~ 83 (106)
T PF08769_consen 33 ELLNSITKELYPDIAKKYGTTPSR--VERAIRHAIEV-------AWTRGNPELL---EKIFGY 83 (106)
T ss_dssp GGGCCTTTTHHHHHHHHTTS-HHH--HHHHHHHHHHH-------HHHCS-CCCC---HHCC-H
T ss_pred HHHhcchhhHHHHHHHHHCCCHHH--HHHHHHHHHHH-------HHHcCCHHHH---HHHhCC
Confidence 344455556777777777788866 99999888643 5788998888 888875
No 130
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=20.07 E-value=47 Score=22.34 Aligned_cols=9 Identities=56% Similarity=1.391 Sum_probs=7.1
Q ss_pred hHHHHhhhH
Q 009775 144 QWLWDMVDE 152 (526)
Q Consensus 144 ~WlWDiiDE 152 (526)
.|||||.|=
T Consensus 2 ~wl~diWdW 10 (23)
T PF01506_consen 2 SWLWDIWDW 10 (23)
T ss_dssp TSHHHHHHH
T ss_pred cHHHHHHHH
Confidence 588888874
Done!