BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009777
         (526 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 37.4 bits (85), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 9/60 (15%)

Query: 237 WQPKDCQMEEFEGSQ--FLTRT--LAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEY 292
           WQP  C + +++ ++  F  R   +AF+GDS  RQ F S + M+      P+V++VG ++
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMN-----PEVKEVGNKH 118


>sp|Q8BH01|TMCO3_MOUSE Transmembrane and coiled-coil domain-containing protein 3 OS=Mus
           musculus GN=Tmco3 PE=2 SV=1
          Length = 678

 Score = 36.2 bits (82), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 102 AKRKENTESLAEGQAKDKHVVEAEKNSSAENSTI--LTKTKENGKKNLGEKNSKLEKESV 159
           A  KE TE + E  A +KH VEA KN   +N ++  L +  E+ +K       ++E+ + 
Sbjct: 145 AAIKEETEYV-ELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAF 203

Query: 160 DRRSSADSANLSSSERIKADENST 183
           D   S    N  +  R++ +E S+
Sbjct: 204 DDNKSVKGVNFEAVLRVEEEEASS 227


>sp|Q7TN73|CASD1_MOUSE CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1
          Length = 797

 Score = 35.4 bits (80), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 237 WQPKDCQMEEFEGSQ----FLTRTLAFIGDSLGRQQFQSLMCMV 276
           WQP  C M +++ S+     + + +AFIGDS  RQ F S + ++
Sbjct: 64  WQPHSCMMHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSFVKII 107


>sp|Q6UWJ1|TMCO3_HUMAN Transmembrane and coiled-coil domain-containing protein 3 OS=Homo
           sapiens GN=TMCO3 PE=2 SV=1
          Length = 677

 Score = 35.0 bits (79), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 102 AKRKENTESLAEGQAKDKHVVEAEKNSSAENSTI--LTKTKENGKKNLGEKNSKLEKESV 159
           A  KE TE + E  A +KH VEA KN   +N ++  L +  E+ +K       ++E+ + 
Sbjct: 145 AAIKEETEYM-ELLAAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAF 203

Query: 160 DRRSSADSANLSSSERIKADENST 183
           D   S    N  +  R++ +E ++
Sbjct: 204 DDNKSVKGVNFEAVLRVEEEEANS 227


>sp|Q88PP0|HMP_PSEPK Flavohemoprotein OS=Pseudomonas putida (strain KT2440) GN=hmp PE=3
           SV=1
          Length = 392

 Score = 33.9 bits (76), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 388 NTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISP 430
            T R++  I  A+N  +H+   W++     HP+LK FY    P
Sbjct: 283 QTRREVHFIHCARNGAVHAFRDWIDGLAARHPQLKRFYCYAEP 325


>sp|P01708|LV205_HUMAN Ig lambda chain V-II region BUR OS=Homo sapiens PE=1 SV=1
          Length = 109

 Score = 33.5 bits (75), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 383 VGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGG 442
           V G P  +  I+ I  + N   +  VSW      + P+L  +   +S R     D  +G 
Sbjct: 10  VSGSPGHSVTISCIGTSSNVGDYKYVSWYQQHPGKAPKLIIY--EVSSRPSGVPDRFSGS 67

Query: 443 SCDNTTPMSIGKEVLQDESGDYSA---GSAVKGTGVKLL 478
              NT  ++I     +DE+  Y     GS V GTG K++
Sbjct: 68  KSGNTASLTISGLQAEDEADYYCCSYIGSYVFGTGTKVI 106


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,340,519
Number of Sequences: 539616
Number of extensions: 8703027
Number of successful extensions: 26877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 26395
Number of HSP's gapped (non-prelim): 582
length of query: 526
length of database: 191,569,459
effective HSP length: 122
effective length of query: 404
effective length of database: 125,736,307
effective search space: 50797468028
effective search space used: 50797468028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)