BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009779
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
           JANNASCHII
 pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
           METHANOCALDOCOCCUS Jannaschii Dsm 2661
          Length = 320

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 17/163 (10%)

Query: 357 ETEAPKTEQMPVVIIAFVMSVFWI--STVAGEL-LNCLAAIGTILELPSAILGLTVLAWG 413
           E E    +  P V+ + V+ +  +    V  EL ++    I   L++   ++G T++A+G
Sbjct: 149 EIEENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFG 208

Query: 414 NSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVMQTTNSYPKAYELHFHFG 473
            S+ +L+  +A AK     M +       + +    +G AL + +   +  A  +     
Sbjct: 209 TSLPELMVSLAAAKRNLGGMVLGNVIGSNIAD----IGGALAVGSLFMHLPAENVQMA-- 262

Query: 474 IITAFVFLLMSLMGSLLVIIWSRFRVPRFWGFCLVALYAVFIA 516
                V ++MSL   LL +     ++ R+ G   +ALY + IA
Sbjct: 263 -----VLVIMSL---LLYLFAKYSKIGRWQGILFLALYIIAIA 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,463,409
Number of Sequences: 62578
Number of extensions: 377701
Number of successful extensions: 892
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 9
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)