Query 009779
Match_columns 526
No_of_seqs 244 out of 2009
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 5.3E-41 1.8E-45 341.2 25.4 292 87-518 8-300 (320)
2 3v5u_A Uncharacterized membran 99.9 1.3E-21 4.6E-26 198.6 13.2 136 88-229 168-304 (320)
3 3au8_A 1-deoxy-D-xylulose 5-ph 13.3 41 0.0014 34.9 0.0 38 16-66 5-42 (488)
4 4b4a_A TATC, SEC-independent p 5.7 9.3E+02 0.032 22.4 6.2 17 210-226 209-225 (249)
5 4hyg_A Putative uncharacterize 4.6 1.9E+03 0.066 20.9 7.5 63 438-502 9-72 (301)
6 1p3q_Q VPS9P, vacuolar protein 4.2 3.8E+02 0.013 19.0 1.6 23 417-439 28-50 (54)
7 1j5u_A Archease, possible chap 3.9 2.9E+02 0.0098 23.5 0.9 18 410-427 26-43 (136)
8 2klu_A T-cell surface glycopro 3.7 8.4E+02 0.029 18.1 3.1 49 5-53 13-62 (70)
9 2hin_A GP39, repressor protein 3.5 1.2E+03 0.041 17.0 4.1 37 390-430 12-51 (71)
10 3j1z_P YIIP, cation efflux fam 3.5 2.2E+03 0.075 20.0 7.3 47 361-407 74-120 (306)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=5.3e-41 Score=341.20 Aligned_cols=292 Identities=17% Similarity=0.301 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHhhhhcccchHHHHHhhhCCCchhhHHHHHHhcCChhHHHHHHHHhhcCCCcchhhhhhcchhhHHHHHh
Q 009779 87 TSLLFFYILIKTAQSHFSLVTTKLSSMLNLSPSMAAVTLLALGNGSPDVFSSVQALRSGHYRTGFGAILSAGAFVSAFVV 166 (526)
Q Consensus 87 ~l~~~f~~l~~~a~~~f~~~l~~is~~l~ls~~~~G~tlla~gns~Pel~~~i~a~~~~~~~laig~i~Gs~~f~~~~v~ 166 (526)
+++..+..+. .++|+++++.+.+++++|+||.+.|+|++|+|||+||+++++.|.++|++|+++||++|||+||+++++
T Consensus 8 ~l~~g~~~l~-~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillvl 86 (320)
T 3v5u_A 8 YFLLGLILLY-YGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVL 86 (320)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHHH
Confidence 4444555554 458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeeecccccCcchHHHHHHHHHHHHHHHHHHHHcCeehHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccc
Q 009779 167 GFVAIYAAPFSVDAGCFVRDVGFYLVAALLLFYVYLSGEIFVWQAVGFVGFYLFFVGIVFWTDLGLSRNEKRSEMEMTED 246 (526)
Q Consensus 167 g~~~l~~~~~~v~~~~~~rd~~~~l~~~~~l~~~~~~g~i~~~~~~~ll~~Y~~yv~~~~~~~~~~~~~~~~~~l~~~~~ 246 (526)
|++.+++ |.++ ++.+.||..+++++...+..+..|| +++++|+.++..|+.|+.+.+..+++ ++| + +|
T Consensus 87 G~~~li~-p~~v-~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~------~~~--~-~~ 154 (320)
T 3v5u_A 87 GLSAIIS-PIIV-DKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSA------EIE--E-NN 154 (320)
T ss_dssp HHHHHHS-CBCC-CHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC---------------
T ss_pred HHHHHHc-cccc-cHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhccc------ccc--c-cc
Confidence 9999999 8988 6788999999888887777777888 99999999999999999998864421 100 0 00
Q ss_pred cccccccchhhhhcccCCCccccccccccccchhHHhHhhhccCCCCCcccchhhhhhhhhhhhHHHHHHhccCCCCCCC
Q 009779 247 CEIGQVKGLEQLEKNDASGFAQVYGKISKAWEFPVTTILKLTIPETDPLEWNRFYSSANIILCPLLLLYACNSFLPFDHP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~l~ltiP~~~~~~w~k~~~~~~~~~~P~~~~~~~~~~~~~~~~ 326 (526)
+ +++++.+..
T Consensus 155 -~---------------------------------------------~~~~~~~~~------------------------ 164 (320)
T 3v5u_A 155 -D---------------------------------------------KNNPSVVFS------------------------ 164 (320)
T ss_dssp -----------------------------------------------CCCHHHHHH------------------------
T ss_pred -c---------------------------------------------cccccHHHH------------------------
Confidence 0 000110000
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhCCCchhHh
Q 009779 327 IAFLLPNTHFPLWFIVLLASFSLALLHFIVETEAPKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILG 406 (526)
Q Consensus 327 ~~~~~~~~~~~~w~~~~~~~~~l~i~~~~~~~~~p~~~~~~~~~~~fi~Si~wI~~~a~elv~~l~~ig~i~gIs~~ilG 406 (526)
+..++.+...+...++.+++..+.+++.+|+||.++|
T Consensus 165 -------------------------------------------~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iG 201 (320)
T 3v5u_A 165 -------------------------------------------LVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIG 201 (320)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHH
Confidence 0012224445667799999999999999999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHhcCCcceehhhhhhhhHHHHHHHHhHHHHHhhcccCCcceEEecchhHHHHHHHHHHHHH
Q 009779 407 LTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVMQTTNSYPKAYELHFHFGIITAFVFLLMSLM 486 (526)
Q Consensus 407 lTvlA~GnSipDlva~v~~Ar~G~~~mAiaa~~GsplfnillglGl~~li~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~ 486 (526)
+|++|+|||+||+++++..||||++++|+++++|||+||+++.+|++.++.+... + ..|.. .++..+++
T Consensus 202 ltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~p~~~-----~-~~d~~-----~~l~~~~l 270 (320)
T 3v5u_A 202 FTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFMHLPA-----E-NVQMA-----VLVIMSLL 270 (320)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHSCBCC-----C-HHHHH-----HHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhccccc-----h-HHHHH-----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875433 1 12211 11222222
Q ss_pred HHHHHHHHcCCeechhHHHHHHHHHHH-HHHHH
Q 009779 487 GSLLVIIWSRFRVPRFWGFCLVALYAV-FIAVS 518 (526)
Q Consensus 487 ~~li~~~~~~~~~~r~~G~~ll~~Y~~-f~~~~ 518 (526)
. ....+++|++|++|..+++.|+. |+.+.
T Consensus 271 l---~~~~~~~~i~~~eG~~ll~~Y~~~y~~~~ 300 (320)
T 3v5u_A 271 L---YLFAKYSKIGRWQGILFLALYIIAIASLR 300 (320)
T ss_dssp H---HHHHHHSCBSHHHHHHHHHHHHHHHHHSC
T ss_pred H---HHHHhCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 1 12456889999999999999999 98654
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.86 E-value=1.3e-21 Score=198.59 Aligned_cols=136 Identities=15% Similarity=0.268 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHhhhCCCchhhHHHHHHhcCChhHHHHHHHHhhcCCCcchhhhhhcchhhHHHHHhh
Q 009779 88 SLLFFYILIKTAQSHFSLVTTKLSSMLNLSPSMAAVTLLALGNGSPDVFSSVQALRSGHYRTGFGAILSAGAFVSAFVVG 167 (526)
Q Consensus 88 l~~~f~~l~~~a~~~f~~~l~~is~~l~ls~~~~G~tlla~gns~Pel~~~i~a~~~~~~~laig~i~Gs~~f~~~~v~g 167 (526)
++.....+. .++++++++++.+++.+|+||.+.|+|++|+|||+||+++++.++++|+.|+++|+++|||+||.++++|
T Consensus 168 l~~~l~~l~-~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g 246 (320)
T 3v5u_A 168 LIIGLIGVL-VGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALA 246 (320)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHH-HHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 334444444 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeeecccccCcchHHHHHHHHHHHHHHHHHHHHcCeehHHHHHHHHHHHHH-HHHHHHHhc
Q 009779 168 FVAIYAAPFSVDAGCFVRDVGFYLVAALLLFYVYLSGEIFVWQAVGFVGFYLF-FVGIVFWTD 229 (526)
Q Consensus 168 ~~~l~~~~~~v~~~~~~rd~~~~l~~~~~l~~~~~~g~i~~~~~~~ll~~Y~~-yv~~~~~~~ 229 (526)
...++. |.+++ .||..+++.+..++..+..||+++|+||..++..|+. |+.+.+..+
T Consensus 247 ~~~li~-p~~~~----~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~ll~~Y~~~y~~~~~~~~ 304 (320)
T 3v5u_A 247 VGSLFM-HLPAE----NVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRMGGG 304 (320)
T ss_dssp HHHHHS-CBCCC----HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHhhc-cccch----HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998 88885 7899888777777666778999999999999999999 999887644
No 3
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*
Probab=13.27 E-value=41 Score=34.94 Aligned_cols=38 Identities=37% Similarity=0.519 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCcCCCCCcccccccCCCCCCCccccccccCCCCcccce
Q 009779 16 ICILLFFILKTPSSSRSQQIPRRSLLDSKTNTPTCSSLEAQPSDGALFNYL 66 (526)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~y~ 66 (526)
+|+|.||.+.+-...- .|++..|..++.++ +..|+||-
T Consensus 5 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~ 42 (488)
T 3au8_A 5 IYIYFFFITITINDLV------------INNTSKCVSIERRK-NNAYINYG 42 (488)
T ss_dssp ---------------------------------------------------
T ss_pred EEEEEEEEEEecccee------------ccccccceehhhhc-ccceeccc
Confidence 4677777777644333 56666777776555 44566664
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.74 E-value=9.3e+02 Score=22.39 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009779 210 QAVGFVGFYLFFVGIVF 226 (526)
Q Consensus 210 ~~~~ll~~Y~~yv~~~~ 226 (526)
+-+..+-++++|=+...
T Consensus 209 q~llaiPl~lLYEisi~ 225 (249)
T 4b4a_A 209 QVLMAIPLLLLYEISIF 225 (249)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 5
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=4.58 E-value=1.9e+03 Score=20.94 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHhHHHHHhhcccC-CcceEEecchhHHHHHHHHHHHHHHHHHHHHHcCCeechh
Q 009779 438 CFAGPMFNMLVGLGSALVMQTTNSY-PKAYELHFHFGIITAFVFLLMSLMGSLLVIIWSRFRVPRF 502 (526)
Q Consensus 438 ~~GsplfnillglGl~~li~~~~~~-~~~~~~~~~~~l~~~~~~l~~~l~~~li~~~~~~~~~~r~ 502 (526)
+.+-..+-+.+-+|--.+..+.+.. .+.+ +-+.....+..+..+.+.++.+....-|++.+|.
T Consensus 9 ~~~~~~~~l~vql~AL~L~~p~~~~g~~af--edP~~~sNs~~YI~~ILvfT~~mL~l~k~~~~~i 72 (301)
T 4hyg_A 9 LLGMPLMLLFVQIIAIVLVMPMQAAGLVAF--ENPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRF 72 (301)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCCTHHHHHHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhcCceee--cCCcchhHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3344444444455544455444332 1222 2112222333333444444555554445555554
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=4.15 E-value=3.8e+02 Score=19.03 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=14.4
Q ss_pred hhHHHHHHHHhcCCcceehhhhh
Q 009779 417 GDLVADVAVAKAGHPAMAMAGCF 439 (526)
Q Consensus 417 pDlva~v~~Ar~G~~~mAiaa~~ 439 (526)
.|.+-++.-+++|+-+-++-+|+
T Consensus 28 ~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 28 PSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 46778888888888888877775
No 7
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=3.88 E-value=2.9e+02 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.0
Q ss_pred HHhhcChhhHHHHHHHHh
Q 009779 410 LAWGNSVGDLVADVAVAK 427 (526)
Q Consensus 410 lA~GnSipDlva~v~~Ar 427 (526)
-|||.|+.|++.+.+.|.
T Consensus 26 ~a~G~tleEaFe~aa~Am 43 (136)
T 1j5u_A 26 EISGNSYEELLEEARNIL 43 (136)
T ss_dssp EEEESSHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHH
Confidence 379999999999988653
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=3.69 E-value=8.4e+02 Score=18.09 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=27.9
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCCcCCCCCccccccc-CCCCCCCcccc
Q 009779 5 FLKSTSITLTLICILLFFILKTPSSSRSQQIPRRSLLD-SKTNTPTCSSL 53 (526)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~C~~i 53 (526)
.+|+++-+|.+.+.-+|+--+--|+-.-..-=+.-||- +-+.+-+|.+.
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQikrlLsEKKTCQC~hr 62 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKRLLSEKKTSQSPHR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHHHHHSSSCCCCCCC
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCcHH
Confidence 46888888888888888777665544311111111221 34556667664
No 9
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=3.51 E-value=1.2e+03 Score=17.01 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=26.6
Q ss_pred HHhHhhhhhCCCchhHhHHHHHh--hcChhhH-HHHHHHHhcCC
Q 009779 390 CLAAIGTILELPSAILGLTVLAW--GNSVGDL-VADVAVAKAGH 430 (526)
Q Consensus 390 ~l~~ig~i~gIs~~ilGlTvlA~--GnSipDl-va~v~~Ar~G~ 430 (526)
..+.+|..+|+|+. ||--| |.++|+. ..-+..+..|.
T Consensus 12 ~~~~lA~~lGVs~~----aVs~W~~g~~iP~~~~~~Ie~~T~G~ 51 (71)
T 2hin_A 12 DVEKAAVGVGVTPG----AVYQWLQAGEIPPLRQSDIEVRTAYK 51 (71)
T ss_dssp SHHHHHHHHTSCHH----HHHHHHHHTSCCHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHCCCHH----HHHHHHhCCCCCHHHHHHHHHHhCCc
Confidence 36788999999987 66788 8899984 34444445554
No 10
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=3.50 E-value=2.2e+03 Score=20.02 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=28.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhCCCchhHhH
Q 009779 361 PKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGL 407 (526)
Q Consensus 361 p~~~~~~~~~~~fi~Si~wI~~~a~elv~~l~~ig~i~gIs~~ilGl 407 (526)
|..+...=.+.+++.+++.+......+.+..+.+-.--.+.+..+++
T Consensus 74 pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~~~ 120 (306)
T 3j1z_P 74 RYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGV 120 (306)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTCCH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCccccccch
Confidence 44455556778888888777777666666666654433333333333
Done!