Query 009779
Match_columns 526
No_of_seqs 244 out of 2009
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 12:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009779.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009779hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uaza_ f.13.1.1 (A:) Archaerh 5.8 5.3E+02 0.038 21.5 6.8 46 336-381 15-62 (236)
2 d1o82a_ a.64.2.1 (A:) Bacterio 4.9 1.2E+02 0.0084 20.2 1.1 15 111-125 2-16 (70)
3 d1axha_ g.3.6.2 (A:) Atracotox 4.3 1.9E+02 0.014 17.0 1.6 21 31-55 7-27 (37)
4 d1l0oc_ a.4.13.2 (C:) SigmaF { 3.7 1.7E+02 0.013 18.9 1.3 16 104-119 31-46 (57)
5 d1mvfd_ b.129.1.1 (D:) MazE {E 3.6 81 0.0059 19.8 -0.6 6 412-417 6-11 (44)
6 d1s6la1 a.4.5.79 (A:21-80) Alk 3.1 3.2E+02 0.023 18.1 2.1 56 100-159 1-56 (60)
7 d1hvwa_ g.3.6.2 (A:) Atracotox 3.1 2.4E+02 0.017 15.0 1.1 9 33-41 6-14 (26)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.0 1.2E+03 0.087 19.3 7.3 30 490-519 42-74 (248)
9 d2cyua1 a.9.1.1 (A:2-40) E3-bi 2.9 3.3E+02 0.024 16.3 1.9 17 103-119 1-17 (39)
10 d1e12a_ f.13.1.1 (A:) Halorhod 2.9 9.4E+02 0.069 19.7 6.0 25 357-381 29-53 (239)
No 1
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=5.83 E-value=5.3e+02 Score=21.51 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHHHhhhc--cCCCCCcchhhHHHHHHHHHHHHHH
Q 009779 336 FPLWFIVLLASFSLALLHFIV--ETEAPKTEQMPVVIIAFVMSVFWIS 381 (526)
Q Consensus 336 ~~~w~~~~~~~~~l~i~~~~~--~~~~p~~~~~~~~~~~fi~Si~wI~ 381 (526)
..+|+-...+++..+.+.|.. .+.+|++++..+.+.+++..+..+.
T Consensus 15 ~~~wl~~~~~~m~~~tv~f~~~~~~~~~~~~r~~~~~~~lIt~IAa~~ 62 (236)
T d1uaza_ 15 ETLWLGIGTLLMLIGTFYFIVKGWGVTDKEAREYYSITILVPGIASAA 62 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHccCCCCcceeeeeHHHHHHHHHHHH
Confidence 356765556666666555554 3444555555555555555444433
No 2
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.90 E-value=1.2e+02 Score=20.21 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=12.3
Q ss_pred HhhhCCCchhhHHHH
Q 009779 111 SSMLNLSPSMAAVTL 125 (526)
Q Consensus 111 s~~l~ls~~~~G~tl 125 (526)
++.+|+|.+++|..+
T Consensus 2 akefgipa~ia~~vl 16 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVL 16 (70)
T ss_dssp HHHHCCCHHHHHHHH
T ss_pred chhhCCcHHHHHHHH
Confidence 567899999998764
No 3
>d1axha_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.28 E-value=1.9e+02 Score=16.97 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=12.8
Q ss_pred CCCCCcccccccCCCCCCCcccccc
Q 009779 31 RSQQIPRRSLLDSKTNTPTCSSLEA 55 (526)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~C~~i~~ 55 (526)
.+||-|+.|.|- ..+|.|-++
T Consensus 7 sgqpcpyne~cc----sgsct~k~n 27 (37)
T d1axha_ 7 SGQPCPYNENCC----SQSCTFKEN 27 (37)
T ss_dssp TTSBCSSGGGBS----SSCEEEEEC
T ss_pred CCCcCCCccccc----cccceeeec
Confidence 456777777665 446666543
No 4
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.72 E-value=1.7e+02 Score=18.91 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.9
Q ss_pred cchHHHHHhhhCCCch
Q 009779 104 SLVTTKLSSMLNLSPS 119 (526)
Q Consensus 104 ~~~l~~is~~l~ls~~ 119 (526)
-|..+.||+.+|+|+.
T Consensus 31 ePT~~EiA~~l~~~~e 46 (57)
T d1l0oc_ 31 APTVTEIADHLGISPE 46 (57)
T ss_dssp CCBHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHCcCHH
Confidence 5788888888888864
No 5
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Probab=3.57 E-value=81 Score=19.81 Aligned_cols=6 Identities=67% Similarity=1.415 Sum_probs=3.3
Q ss_pred hhcChh
Q 009779 412 WGNSVG 417 (526)
Q Consensus 412 ~GnSip 417 (526)
||||.+
T Consensus 6 wGNS~g 11 (44)
T d1mvfd_ 6 WGNSPA 11 (44)
T ss_dssp ETTEEE
T ss_pred Eeccee
Confidence 555554
No 6
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=3.2e+02 Score=18.13 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=35.9
Q ss_pred hhcccchHHHHHhhhCCCchhhHHHHHHhcCChhHHHHHHHHhhcCCCcchhhhhhcchh
Q 009779 100 QSHFSLVTTKLSSMLNLSPSMAAVTLLALGNGSPDVFSSVQALRSGHYRTGFGAILSAGA 159 (526)
Q Consensus 100 ~~~f~~~l~~is~~l~ls~~~~G~tlla~gns~Pel~~~i~a~~~~~~~laig~i~Gs~~ 159 (526)
++.|+|-+..+++---+|..-.. -+.|-+.-|+-.+..++-..+.| --|+++|.++
T Consensus 1 a~l~v~LLr~LA~G~PVs~~~LA---~alg~~~~eV~~aL~~~p~tEyD-~~G~ivG~GL 56 (60)
T d1s6la1 1 ADLLVPLLRELAKGRPVSRTTLA---GILDWPAERVAAVLEQATSTEYD-KDGNIIGYGL 56 (60)
T ss_dssp CCCCCHHHHHHHTTCCBCHHHHH---HHHTCCHHHHHHHHTTCCSSCEE-TTTEECCCCS
T ss_pred CchHHHHHHHHhCCCCcCHHHHH---HHhCCCHHHHHHHHHhCCCceec-CCCCEEeeee
Confidence 35678888888875444433222 36788888888877777654443 2677888764
No 7
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=3.08 E-value=2.4e+02 Score=14.97 Aligned_cols=9 Identities=22% Similarity=0.121 Sum_probs=3.8
Q ss_pred CCCcccccc
Q 009779 33 QQIPRRSLL 41 (526)
Q Consensus 33 ~~~~~~~~~ 41 (526)
||-|+.|.|
T Consensus 6 qpcpynenc 14 (26)
T d1hvwa_ 6 QPCPYNENC 14 (26)
T ss_dssp SBCSSTTSB
T ss_pred CcCCCCccc
Confidence 444444433
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=1.2e+03 Score=19.30 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHcCCeechh---HHHHHHHHHHHHHHHHH
Q 009779 490 LVIIWSRFRVPRF---WGFCLVALYAVFIAVSL 519 (526)
Q Consensus 490 i~~~~~~~~~~r~---~G~~ll~~Y~~f~~~~~ 519 (526)
.++..+|...+.+ =|..++..|++|-++.-
T Consensus 42 ~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT 74 (248)
T d2r6gf1 42 LYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCT 74 (248)
T ss_dssp HHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EEEEEccCccceehhhhHHHHHHHHHHHhheeE
Confidence 3444455444432 48888888888876654
No 9
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=2.91 E-value=3.3e+02 Score=16.28 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=12.5
Q ss_pred ccchHHHHHhhhCCCch
Q 009779 103 FSLVTTKLSSMLNLSPS 119 (526)
Q Consensus 103 f~~~l~~is~~l~ls~~ 119 (526)
++|++.++++..|++.+
T Consensus 1 iSP~arkla~e~gidl~ 17 (39)
T d2cyua1 1 LSPAIRRLLAEHNLDAS 17 (39)
T ss_dssp CCCTHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHcCCCHH
Confidence 36888888888887643
No 10
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=2.90 E-value=9.4e+02 Score=19.68 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=14.0
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHH
Q 009779 357 ETEAPKTEQMPVVIIAFVMSVFWIS 381 (526)
Q Consensus 357 ~~~~p~~~~~~~~~~~fi~Si~wI~ 381 (526)
.+..|++++..+.+.++++.+...+
T Consensus 29 ~~~~~~~~R~~~~l~~~I~~IA~~~ 53 (239)
T d1e12a_ 29 RTIRPGRPRLIWGATLMIPLVSISS 53 (239)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCchhhhhHHHHHHHHHHHHH
Confidence 4445565666666666655554444
Done!