Query 009780
Match_columns 526
No_of_seqs 222 out of 1546
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-141 5E-146 1111.5 43.6 474 49-525 31-507 (524)
2 PLN02849 beta-glucosidase 100.0 1E-132 2E-137 1074.9 47.0 455 49-525 24-481 (503)
3 PLN02998 beta-glucosidase 100.0 8E-133 2E-137 1074.7 45.3 461 48-526 24-487 (497)
4 PLN02814 beta-glucosidase 100.0 2E-132 3E-137 1074.1 44.0 456 49-525 22-481 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 1E-128 3E-133 1009.2 40.7 446 53-525 2-451 (460)
6 PRK13511 6-phospho-beta-galact 100.0 1E-127 3E-132 1033.3 44.9 446 53-525 3-464 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 2E-127 5E-132 1029.4 45.7 445 53-525 2-462 (467)
8 PRK09589 celA 6-phospho-beta-g 100.0 1E-126 3E-131 1024.3 45.6 443 54-525 3-470 (476)
9 PRK09593 arb 6-phospho-beta-gl 100.0 1E-126 3E-131 1024.9 45.0 444 52-525 3-471 (478)
10 PRK15014 6-phospho-beta-glucos 100.0 5E-126 1E-130 1019.1 45.9 446 50-525 1-471 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 9E-128 2E-132 1034.6 32.1 447 52-525 2-451 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 4E-125 1E-129 1010.5 45.5 442 54-525 3-467 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4E-122 8E-127 980.9 41.9 427 55-520 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 3.5E-14 7.5E-19 142.2 23.7 250 131-519 2-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.4 3.1E-13 6.8E-18 142.6 9.7 109 109-223 10-141 (374)
16 PF07745 Glyco_hydro_53: Glyco 99.2 9E-09 1.9E-13 106.3 26.2 251 112-487 27-299 (332)
17 PF00150 Cellulase: Cellulase 99.1 2.9E-10 6.3E-15 114.1 10.5 109 110-223 22-134 (281)
18 PF00331 Glyco_hydro_10: Glyco 99.1 2.8E-08 6.1E-13 102.9 25.3 302 55-522 6-318 (320)
19 PRK10150 beta-D-glucuronidase; 99.1 1.9E-08 4E-13 112.9 24.9 264 109-525 313-593 (604)
20 PF01229 Glyco_hydro_39: Glyco 99.0 2.4E-08 5.2E-13 109.2 18.4 291 110-522 40-358 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.9 2.6E-07 5.6E-12 93.3 22.6 269 130-525 67-342 (345)
22 COG1874 LacA Beta-galactosidas 98.9 5.1E-09 1.1E-13 116.3 9.4 120 109-234 30-176 (673)
23 COG3867 Arabinogalactan endo-1 98.3 0.00034 7.3E-09 70.1 23.5 309 46-502 26-361 (403)
24 PF02836 Glyco_hydro_2_C: Glyc 98.1 2.6E-05 5.5E-10 79.9 12.8 92 108-220 35-132 (298)
25 PF01301 Glyco_hydro_35: Glyco 97.8 6.7E-05 1.5E-09 77.8 9.6 109 110-221 25-151 (319)
26 COG2730 BglC Endoglucanase [Ca 97.8 7.2E-05 1.6E-09 80.2 9.9 111 112-222 76-193 (407)
27 PLN03059 beta-galactosidase; P 97.5 0.0013 2.8E-08 75.2 13.4 110 109-222 59-189 (840)
28 PF14587 Glyco_hydr_30_2: O-Gl 97.3 0.0024 5.1E-08 67.1 11.7 102 119-221 57-184 (384)
29 PF01373 Glyco_hydro_14: Glyco 96.9 0.0015 3.3E-08 68.8 5.6 106 108-221 15-151 (402)
30 PLN02161 beta-amylase 96.8 0.006 1.3E-07 65.6 9.4 111 105-222 113-262 (531)
31 PLN02803 beta-amylase 96.7 0.0064 1.4E-07 65.8 9.2 108 108-222 106-252 (548)
32 PLN00197 beta-amylase; Provisi 96.7 0.0079 1.7E-07 65.3 9.3 108 108-222 126-272 (573)
33 PLN02801 beta-amylase 96.5 0.013 2.9E-07 63.1 10.1 99 108-211 36-173 (517)
34 PLN02905 beta-amylase 96.2 0.027 5.8E-07 62.0 10.3 101 105-210 282-421 (702)
35 PLN02705 beta-amylase 96.2 0.028 6E-07 61.7 10.0 99 107-210 266-403 (681)
36 PF13204 DUF4038: Protein of u 96.1 0.04 8.6E-07 56.5 10.5 105 111-220 32-156 (289)
37 PF14488 DUF4434: Domain of un 96.1 0.046 1E-06 51.4 10.0 105 109-221 20-131 (166)
38 PF11790 Glyco_hydro_cc: Glyco 96.1 0.032 7E-07 55.5 9.4 67 411-489 151-217 (239)
39 KOG0496 Beta-galactosidase [Ca 95.9 0.039 8.5E-07 61.2 9.8 108 110-221 50-176 (649)
40 PF03198 Glyco_hydro_72: Gluca 95.7 0.47 1E-05 48.7 15.9 90 110-220 54-145 (314)
41 PRK09525 lacZ beta-D-galactosi 94.1 0.22 4.8E-06 59.6 9.9 91 107-221 369-464 (1027)
42 PRK10340 ebgA cryptic beta-D-g 93.0 0.41 8.9E-06 57.4 9.8 89 108-220 354-450 (1021)
43 COG3250 LacZ Beta-galactosidas 93.0 0.42 9.1E-06 55.5 9.4 90 105-221 317-408 (808)
44 PF12891 Glyco_hydro_44: Glyco 92.4 0.65 1.4E-05 46.0 8.6 114 151-292 24-183 (239)
45 COG3934 Endo-beta-mannanase [C 90.9 0.12 2.7E-06 55.3 1.9 110 110-222 27-150 (587)
46 PF07488 Glyco_hydro_67M: Glyc 87.5 5.1 0.00011 41.1 10.4 88 108-209 56-150 (328)
47 PF14871 GHL6: Hypothetical gl 87.4 4.5 9.7E-05 36.5 9.1 94 113-207 4-123 (132)
48 COG3664 XynB Beta-xylosidase [ 86.1 1.1 2.5E-05 47.4 5.2 99 118-223 14-117 (428)
49 PF02638 DUF187: Glycosyl hydr 79.3 8.5 0.00018 39.9 8.5 99 109-208 19-154 (311)
50 smart00642 Aamy Alpha-amylase 76.9 8.4 0.00018 36.1 6.9 63 107-171 17-90 (166)
51 PF00332 Glyco_hydro_17: Glyco 72.9 5.1 0.00011 41.5 4.8 83 413-506 212-303 (310)
52 PF10566 Glyco_hydro_97: Glyco 64.4 43 0.00094 34.1 9.3 118 81-206 9-149 (273)
53 KOG2233 Alpha-N-acetylglucosam 64.1 21 0.00046 38.9 7.1 113 108-220 77-248 (666)
54 PLN02361 alpha-amylase 62.8 19 0.00041 38.7 6.7 68 106-173 26-100 (401)
55 TIGR02402 trehalose_TreZ malto 62.3 35 0.00076 38.2 9.0 93 107-208 109-237 (542)
56 PRK12313 glycogen branching en 61.4 33 0.00071 39.1 8.7 93 108-208 169-302 (633)
57 cd07945 DRE_TIM_CMS Leptospira 60.3 55 0.0012 33.3 9.3 65 112-177 77-141 (280)
58 PF00128 Alpha-amylase: Alpha 60.2 8.2 0.00018 38.5 3.3 57 112-171 7-72 (316)
59 PF12876 Cellulase-like: Sugar 59.8 5.2 0.00011 33.2 1.5 19 203-221 1-22 (88)
60 COG5309 Exo-beta-1,3-glucanase 58.7 30 0.00065 35.0 6.7 79 417-504 221-304 (305)
61 cd07939 DRE_TIM_NifV Streptomy 58.4 33 0.00071 34.3 7.2 59 112-171 72-130 (259)
62 cd03174 DRE_TIM_metallolyase D 58.1 29 0.00063 34.3 6.8 65 112-177 77-141 (265)
63 cd06543 GH18_PF-ChiA-like PF-C 57.1 49 0.0011 34.0 8.4 88 116-212 19-109 (294)
64 TIGR02090 LEU1_arch isopropylm 56.9 29 0.00062 36.8 6.8 62 111-173 73-134 (363)
65 PRK05402 glycogen branching en 56.8 59 0.0013 37.8 9.9 93 108-208 264-397 (726)
66 PLN02447 1,4-alpha-glucan-bran 56.8 55 0.0012 38.1 9.5 94 107-208 248-383 (758)
67 PF03659 Glyco_hydro_71: Glyco 55.8 50 0.0011 35.4 8.4 51 109-171 17-67 (386)
68 TIGR00612 ispG_gcpE 1-hydroxy- 55.4 75 0.0016 33.3 9.2 87 101-203 74-160 (346)
69 PRK09441 cytoplasmic alpha-amy 51.6 27 0.00059 38.3 5.8 70 106-175 19-107 (479)
70 PF03511 Fanconi_A: Fanconi an 51.3 11 0.00024 29.3 1.9 39 133-175 19-57 (64)
71 TIGR00433 bioB biotin syntheta 51.1 40 0.00086 34.1 6.6 54 112-170 123-177 (296)
72 PLN00196 alpha-amylase; Provis 50.5 31 0.00067 37.4 5.9 68 107-174 42-117 (428)
73 TIGR01515 branching_enzym alph 50.4 95 0.0021 35.3 10.1 101 108-208 155-288 (613)
74 PRK14041 oxaloacetate decarbox 50.1 54 0.0012 36.1 7.7 55 108-177 89-148 (467)
75 cd02874 GH18_CFLE_spore_hydrol 49.2 75 0.0016 32.5 8.3 84 115-208 16-103 (313)
76 TIGR02660 nifV_homocitr homoci 48.9 52 0.0011 34.8 7.3 59 112-171 75-133 (365)
77 PRK05799 coproporphyrinogen II 48.7 65 0.0014 34.0 8.0 95 112-224 99-196 (374)
78 PF05089 NAGLU: Alpha-N-acetyl 48.5 47 0.001 34.7 6.6 77 108-184 18-128 (333)
79 TIGR02403 trehalose_treC alpha 48.5 26 0.00056 39.2 5.1 57 107-171 25-95 (543)
80 PLN02746 hydroxymethylglutaryl 48.2 54 0.0012 34.6 7.1 85 111-205 123-208 (347)
81 cd06593 GH31_xylosidase_YicI Y 47.6 1.2E+02 0.0026 31.1 9.5 105 111-220 26-160 (308)
82 PRK05692 hydroxymethylglutaryl 47.5 65 0.0014 32.9 7.5 85 111-205 81-166 (287)
83 PRK12581 oxaloacetate decarbox 47.3 45 0.00096 36.7 6.5 56 107-177 98-158 (468)
84 cd07948 DRE_TIM_HCS Saccharomy 47.1 34 0.00073 34.6 5.2 60 112-172 74-133 (262)
85 PRK12858 tagatose 1,6-diphosph 46.6 75 0.0016 33.4 7.9 56 115-175 112-167 (340)
86 TIGR03581 EF_0839 conserved hy 46.3 42 0.00092 32.9 5.4 73 110-196 136-230 (236)
87 PRK14040 oxaloacetate decarbox 46.2 63 0.0014 36.6 7.7 92 112-222 100-211 (593)
88 PRK10933 trehalose-6-phosphate 46.2 30 0.00065 38.8 5.2 61 107-171 31-101 (551)
89 PRK12568 glycogen branching en 46.1 86 0.0019 36.4 8.8 95 108-208 268-401 (730)
90 cd06545 GH18_3CO4_chitinase Th 46.0 71 0.0015 31.7 7.4 74 128-208 26-99 (253)
91 PRK11858 aksA trans-homoaconit 44.7 73 0.0016 33.9 7.6 59 112-171 78-136 (378)
92 cd06601 GH31_lyase_GLase GLase 43.7 1.4E+02 0.0031 31.2 9.4 71 154-226 67-140 (332)
93 PLN02784 alpha-amylase 42.4 61 0.0013 38.2 6.9 68 106-173 518-592 (894)
94 COG3589 Uncharacterized conser 42.3 62 0.0014 33.8 6.2 58 112-182 19-76 (360)
95 PRK14706 glycogen branching en 41.6 1.2E+02 0.0026 34.8 9.0 87 116-208 175-299 (639)
96 PF02065 Melibiase: Melibiase; 41.6 1.7E+02 0.0037 31.5 9.7 92 110-208 59-183 (394)
97 PF02055 Glyco_hydro_30: O-Gly 40.4 1.6E+02 0.0035 32.6 9.6 97 416-523 319-419 (496)
98 TIGR03234 OH-pyruv-isom hydrox 40.2 89 0.0019 30.7 7.0 69 106-177 81-150 (254)
99 PRK04161 tagatose 1,6-diphosph 40.0 1.5E+02 0.0032 31.1 8.5 93 113-216 111-206 (329)
100 PRK12331 oxaloacetate decarbox 39.7 1.1E+02 0.0024 33.5 8.1 93 111-222 98-210 (448)
101 PF13200 DUF4015: Putative gly 39.6 90 0.002 32.5 7.1 97 109-206 13-136 (316)
102 COG0821 gcpE 1-hydroxy-2-methy 39.6 2.2E+02 0.0049 29.9 9.7 85 103-203 78-162 (361)
103 TIGR02635 RhaI_grampos L-rhamn 39.5 1.9E+02 0.0042 30.9 9.7 87 103-209 35-130 (378)
104 TIGR02456 treS_nterm trehalose 39.3 41 0.00088 37.6 4.9 58 109-174 28-101 (539)
105 PRK08599 coproporphyrinogen II 39.3 1.1E+02 0.0025 32.2 8.1 95 112-224 100-197 (377)
106 PRK14705 glycogen branching en 39.3 1.6E+02 0.0035 36.4 10.0 97 111-208 767-897 (1224)
107 PRK12399 tagatose 1,6-diphosph 39.2 1.5E+02 0.0033 30.9 8.5 92 114-216 110-204 (324)
108 cd07944 DRE_TIM_HOA_like 4-hyd 39.1 1.1E+02 0.0025 30.7 7.7 65 112-205 85-149 (266)
109 PRK09505 malS alpha-amylase; R 38.8 57 0.0012 37.6 6.0 65 111-175 232-318 (683)
110 COG2951 MltB Membrane-bound ly 38.8 40 0.00088 35.4 4.4 96 411-516 110-224 (343)
111 cd07941 DRE_TIM_LeuA3 Desulfob 38.6 2.4E+02 0.0053 28.4 10.0 62 112-174 81-142 (273)
112 TIGR01210 conserved hypothetic 38.3 1.1E+02 0.0024 31.6 7.6 108 112-235 117-229 (313)
113 cd07938 DRE_TIM_HMGL 3-hydroxy 38.2 1.2E+02 0.0025 30.9 7.5 84 112-205 76-160 (274)
114 cd06603 GH31_GANC_GANAB_alpha 38.2 1.5E+02 0.0034 30.8 8.7 71 154-224 67-167 (339)
115 cd06600 GH31_MGAM-like This fa 37.8 2.1E+02 0.0045 29.6 9.5 107 112-223 27-164 (317)
116 PLN02923 xylose isomerase 37.8 5.7E+02 0.012 27.9 13.4 74 109-191 123-201 (478)
117 TIGR00539 hemN_rel putative ox 37.6 1.4E+02 0.003 31.4 8.3 61 112-178 100-163 (360)
118 cd06602 GH31_MGAM_SI_GAA This 36.7 1.8E+02 0.0039 30.4 8.9 107 111-222 26-168 (339)
119 cd06542 GH18_EndoS-like Endo-b 35.8 1.1E+02 0.0025 30.1 7.0 55 150-208 50-104 (255)
120 COG1523 PulA Type II secretory 34.8 76 0.0017 36.6 6.1 57 115-171 206-285 (697)
121 TIGR02401 trehalose_TreY malto 34.7 93 0.002 36.6 6.8 59 109-175 16-91 (825)
122 cd06591 GH31_xylosidase_XylS X 34.7 2.5E+02 0.0054 29.0 9.5 113 111-224 26-164 (319)
123 cd07943 DRE_TIM_HOA 4-hydroxy- 34.1 2.6E+02 0.0056 27.9 9.3 46 112-172 88-133 (263)
124 PRK14511 maltooligosyl trehalo 33.5 77 0.0017 37.6 5.9 59 108-174 19-94 (879)
125 PRK09058 coproporphyrinogen II 33.4 1.1E+02 0.0024 33.4 6.9 104 112-234 163-270 (449)
126 PRK07094 biotin synthase; Prov 33.3 73 0.0016 32.8 5.3 56 110-170 127-184 (323)
127 PRK05474 xylose isomerase; Pro 33.2 2.1E+02 0.0046 31.1 8.7 72 111-191 81-157 (437)
128 PLN02389 biotin synthase 33.1 1.2E+02 0.0026 32.3 7.0 57 110-171 176-233 (379)
129 cd06598 GH31_transferase_CtsZ 32.3 1.7E+02 0.0037 30.2 7.8 109 112-223 27-168 (317)
130 PRK07379 coproporphyrinogen II 32.1 1.9E+02 0.0042 30.9 8.5 104 112-233 115-221 (400)
131 PRK12677 xylose isomerase; Pro 32.0 3.6E+02 0.0077 28.8 10.4 71 111-190 33-104 (384)
132 PRK13398 3-deoxy-7-phosphohept 32.0 1.6E+02 0.0035 29.7 7.4 71 105-180 37-107 (266)
133 PRK00366 ispG 4-hydroxy-3-meth 31.9 2.8E+02 0.006 29.4 9.1 72 119-203 98-169 (360)
134 TIGR01108 oadA oxaloacetate de 31.8 1.7E+02 0.0037 33.2 8.2 93 111-222 93-205 (582)
135 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.5 2.3E+02 0.005 28.6 8.5 46 111-171 93-138 (275)
136 PRK13209 L-xylulose 5-phosphat 31.4 4E+02 0.0086 26.4 10.3 52 111-168 23-74 (283)
137 PRK03705 glycogen debranching 30.8 1E+02 0.0023 35.4 6.4 54 115-171 185-262 (658)
138 COG3623 SgaU Putative L-xylulo 30.7 2.7E+02 0.0058 27.9 8.2 80 111-205 20-103 (287)
139 PRK10785 maltodextrin glucosid 30.3 88 0.0019 35.5 5.7 53 111-171 181-246 (598)
140 cd07947 DRE_TIM_Re_CS Clostrid 29.7 1.9E+02 0.004 29.5 7.4 59 112-171 77-135 (279)
141 TIGR03217 4OH_2_O_val_ald 4-hy 29.2 3.9E+02 0.0085 27.9 9.9 54 112-180 90-145 (333)
142 TIGR01211 ELP3 histone acetylt 29.0 2.1E+02 0.0044 32.1 8.1 107 112-236 206-317 (522)
143 PF10566 Glyco_hydro_97: Glyco 28.8 89 0.0019 31.9 4.8 70 111-193 108-177 (273)
144 TIGR02159 PA_CoA_Oxy4 phenylac 28.7 78 0.0017 29.1 4.1 54 103-167 36-90 (146)
145 PRK06294 coproporphyrinogen II 28.5 2.3E+02 0.0051 29.9 8.3 94 112-224 103-200 (370)
146 TIGR02630 xylose_isom_A xylose 28.3 3.3E+02 0.0073 29.5 9.1 72 111-191 80-156 (434)
147 COG1649 Uncharacterized protei 27.9 1.6E+02 0.0035 31.9 6.8 100 109-208 64-199 (418)
148 PRK14510 putative bifunctional 27.5 69 0.0015 39.5 4.5 58 108-171 184-267 (1221)
149 PLN02960 alpha-amylase 27.4 1.1E+02 0.0024 36.2 5.9 94 107-208 414-549 (897)
150 TIGR02631 xylA_Arthro xylose i 26.8 4.1E+02 0.0089 28.4 9.7 91 110-209 33-129 (382)
151 PRK00694 4-hydroxy-3-methylbut 26.4 2.9E+02 0.0062 31.2 8.5 57 112-182 48-105 (606)
152 cd06592 GH31_glucosidase_KIAA1 26.1 3.7E+02 0.0081 27.5 9.0 106 111-221 32-167 (303)
153 cd07940 DRE_TIM_IPMS 2-isoprop 26.1 2.1E+02 0.0046 28.6 7.1 59 112-171 72-134 (268)
154 PF04914 DltD_C: DltD C-termin 26.1 70 0.0015 28.8 3.2 62 153-221 38-103 (130)
155 PF00682 HMGL-like: HMGL-like 26.0 4.2E+02 0.0091 25.6 9.1 107 112-222 66-194 (237)
156 PRK08195 4-hyroxy-2-oxovalerat 25.9 2.3E+02 0.005 29.7 7.5 68 112-209 91-158 (337)
157 PF00150 Cellulase: Cellulase 25.9 1.7E+02 0.0038 28.6 6.5 56 153-211 23-78 (281)
158 TIGR00542 hxl6Piso_put hexulos 25.8 5.6E+02 0.012 25.4 10.1 53 110-168 17-69 (279)
159 TIGR01232 lacD tagatose 1,6-di 25.6 2.8E+02 0.006 29.0 7.7 92 114-216 111-205 (325)
160 PF04551 GcpE: GcpE protein; 25.5 4.3E+02 0.0092 28.1 9.2 57 112-182 34-91 (359)
161 TIGR00423 radical SAM domain p 25.2 1.1E+02 0.0023 31.5 4.8 53 111-171 106-165 (309)
162 PRK06256 biotin synthase; Vali 25.2 1.1E+02 0.0025 31.5 5.1 56 110-170 150-206 (336)
163 cd06568 GH20_SpHex_like A subg 24.9 2E+02 0.0043 30.0 6.8 65 110-180 19-101 (329)
164 PTZ00445 p36-lilke protein; Pr 24.8 1E+02 0.0022 30.3 4.2 52 151-205 29-89 (219)
165 TIGR02100 glgX_debranch glycog 24.7 91 0.002 36.0 4.6 22 150-171 244-265 (688)
166 cd00927 Cyt_c_Oxidase_VIc Cyto 24.6 40 0.00087 27.0 1.2 20 104-123 45-66 (70)
167 TIGR00419 tim triosephosphate 24.5 1.8E+02 0.0038 28.3 5.9 44 115-171 74-117 (205)
168 PTZ00445 p36-lilke protein; Pr 24.5 1.4E+02 0.0031 29.3 5.2 56 115-173 35-100 (219)
169 cd00019 AP2Ec AP endonuclease 24.5 3.7E+02 0.0081 26.7 8.6 54 109-169 10-64 (279)
170 PRK14507 putative bifunctional 24.3 1.6E+02 0.0036 37.5 6.8 60 108-175 757-833 (1693)
171 PRK09856 fructoselysine 3-epim 24.2 1.2E+02 0.0025 30.2 4.8 61 106-169 87-147 (275)
172 cd02742 GH20_hexosaminidase Be 24.1 2.4E+02 0.0052 28.9 7.2 65 110-180 17-98 (303)
173 PRK01060 endonuclease IV; Prov 24.0 3.4E+02 0.0073 27.0 8.1 50 111-167 14-63 (281)
174 PRK09249 coproporphyrinogen II 23.8 2.6E+02 0.0057 30.4 7.8 62 112-178 151-214 (453)
175 PRK10340 ebgA cryptic beta-D-g 23.6 1.8E+02 0.0039 35.3 6.9 76 426-525 505-600 (1021)
176 PRK09432 metF 5,10-methylenete 23.4 1.7E+02 0.0036 30.2 5.8 76 145-223 186-283 (296)
177 PRK12755 phospho-2-dehydro-3-d 23.0 2.7E+02 0.0059 29.4 7.2 62 108-170 67-143 (353)
178 cd06599 GH31_glycosidase_Aec37 23.0 6.2E+02 0.013 26.0 10.0 111 111-222 31-171 (317)
179 smart00729 Elp3 Elongator prot 22.7 4.2E+02 0.0092 24.1 8.1 54 112-170 100-156 (216)
180 PF01261 AP_endonuc_2: Xylose 22.4 66 0.0014 29.9 2.5 63 106-169 68-130 (213)
181 PRK10426 alpha-glucosidase; Pr 21.9 6.7E+02 0.014 28.8 10.7 108 110-220 222-364 (635)
182 PRK11572 copper homeostasis pr 21.8 2.3E+02 0.005 28.5 6.2 44 106-160 70-113 (248)
183 PRK08446 coproporphyrinogen II 21.8 4E+02 0.0087 27.8 8.4 59 112-177 98-160 (350)
184 TIGR00542 hxl6Piso_put hexulos 21.6 1.7E+02 0.0037 29.2 5.4 62 106-170 91-152 (279)
185 PRK09856 fructoselysine 3-epim 21.5 3.5E+02 0.0076 26.7 7.7 52 110-169 14-65 (275)
186 PF04551 GcpE: GcpE protein; 21.3 2.3E+02 0.0049 30.0 6.2 85 102-202 77-168 (359)
187 COG0366 AmyA Glycosidases [Car 21.3 1.1E+02 0.0024 33.0 4.3 60 113-174 33-102 (505)
188 COG1501 Alpha-glucosidases, fa 20.7 3.6E+02 0.0078 31.7 8.4 99 121-226 294-422 (772)
189 PLN02925 4-hydroxy-3-methylbut 20.6 4.9E+02 0.011 30.2 9.0 80 113-206 114-222 (733)
190 cd06565 GH20_GcnA-like Glycosy 20.5 3.8E+02 0.0082 27.5 7.8 64 110-180 18-86 (301)
191 PRK13210 putative L-xylulose 5 20.5 6.3E+02 0.014 24.9 9.3 53 111-169 18-70 (284)
192 PRK02048 4-hydroxy-3-methylbut 20.3 5.6E+02 0.012 29.2 9.3 80 113-206 45-153 (611)
193 PRK09997 hydroxypyruvate isome 20.3 3.2E+02 0.007 26.8 7.1 66 109-177 85-151 (258)
194 TIGR03471 HpnJ hopanoid biosyn 20.1 1.9E+02 0.0042 31.5 5.9 60 112-177 287-348 (472)
195 TIGR02102 pullulan_Gpos pullul 20.1 5.9E+02 0.013 31.3 10.2 102 107-208 478-635 (1111)
196 PRK05660 HemN family oxidoredu 20.1 4.1E+02 0.009 28.1 8.2 94 112-223 107-203 (378)
197 PRK09282 pyruvate carboxylase 20.1 3.8E+02 0.0082 30.5 8.2 93 111-222 98-210 (592)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-141 Score=1111.52 Aligned_cols=474 Identities=64% Similarity=1.191 Sum_probs=441.6
Q ss_pred ccccCCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEe
Q 009780 49 KFNRSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRF 128 (526)
Q Consensus 49 ~~~~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~ 128 (526)
.+.|.+||++|+||+||||||+|||+++|||++|+||+|+|..|+++.+++++++|||+||+|+|||+||++||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 67899999999999999999999999999999999999999778888889999999999999999999999999999999
Q ss_pred eccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhc
Q 009780 129 SISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 129 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 208 (526)
||+||||+|.|+..+.+|++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999655789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 009780 209 DRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGIT 288 (526)
Q Consensus 209 ~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~ 288 (526)
|+||+|+|+|||++++..||..|..|||+|+... ..|..|+|.+++|+|+||+|+|||+||++||++++..|+|+||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~-~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYV-GNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCccc-ccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 9999999999999999999999999999999877 899999999999999999999999999999999988999999999
Q ss_pred eeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCcceee
Q 009780 289 LISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAV 368 (526)
Q Consensus 289 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~ 368 (526)
++..|++|++++++|.+||+|+.+|..+|+++|++.|+||..|++.+++|||.||++|.+++||+.||+|||||++.+++
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~ 349 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVK 349 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-CCCCcccCcccccccccCC-cccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCC
Q 009780 369 DIPVANS-INISYSTDSQANLTAERNG-KLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPL 446 (526)
Q Consensus 369 ~~~~~~~-~~~~~~~d~~~~~~~~~~g-~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~ 446 (526)
....+.. ..+.+..|..+.. ..++ .++++.+.+.|..++|+|||++|++++++|++|||||||||+++.+....+.
T Consensus 350 ~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~ 427 (524)
T KOG0626|consen 350 HLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSL 427 (524)
T ss_pred ccCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccch
Confidence 8654221 2234444544443 2222 4566666788999999999999999999999999999999999976543445
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHH-cCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccchHHHHHHHhc
Q 009780 447 KEALKDPMRLDYFKNHLLFLRKAIK-EGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 447 ~~~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 525 (526)
....+|..||+|++.||++|++||. +||||+|||+|||||||||..||+.||||++|||+|.++|+||.|++||+++|+
T Consensus 428 ~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~ 507 (524)
T KOG0626|consen 428 EVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLK 507 (524)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHc
Confidence 5678999999999999999999996 999999999999999999999999999999999998899999999999999987
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.1e-132 Score=1074.91 Aligned_cols=455 Identities=48% Similarity=0.892 Sum_probs=407.6
Q ss_pred ccccCCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEe
Q 009780 49 KFNRSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRF 128 (526)
Q Consensus 49 ~~~~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~ 128 (526)
.+++.+||++|+||+|||||||||++++||||+|+||.|++. + ++.++++||||||||+|||+|||+||+++|||
T Consensus 24 ~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~-~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 24 DYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHS-R----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeecc-C----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 355678999999999999999999999999999999999873 3 34688999999999999999999999999999
Q ss_pred eccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhc
Q 009780 129 SISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 129 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 208 (526)
||+||||+|+| +|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++||
T Consensus 99 SIsWsRI~P~G--~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 99 SISWSRLIPNG--RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred eccHHhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhc
Confidence 99999999998 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 009780 209 DRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGIT 288 (526)
Q Consensus 209 ~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~ 288 (526)
|+|++|+|||||++++..||..|.+|||.+.... ..|.++++.++.++++||+++|||+||+++|++++..++++||++
T Consensus 177 DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~ 255 (503)
T PLN02849 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPG-RNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFS 255 (503)
T ss_pred CcCCEEEEecchhhhhhchhhhccCCCCcccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999999999999999999999999754211 135555556778999999999999999999997654578999999
Q ss_pred eeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCcceee
Q 009780 289 LISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAV 368 (526)
Q Consensus 289 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~ 368 (526)
++..+++|.+++|+|++||++.+++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+
T Consensus 256 ~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~ 335 (503)
T PLN02849 256 LFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVT 335 (503)
T ss_pred EECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999997
Q ss_pred cCCCCCC--CCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCC
Q 009780 369 DIPVANS--INISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPL 446 (526)
Q Consensus 369 ~~~~~~~--~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~ 446 (526)
....... ..+.+.. ..+.+....+++|| +|+|+||+++|+++++||++|||||||||++..++ .
T Consensus 336 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~----~ 401 (503)
T PLN02849 336 NIKIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD----L 401 (503)
T ss_pred cCCCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC----C
Confidence 5321100 0000100 00112223557899 69999999999999999999889999999998763 3
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCC-CccccccchHHHHHHHhc
Q 009780 447 KEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQN-GLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 447 ~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~~R~~K~S~~~y~~ii~ 525 (526)
+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++| +++|+||+|++||+++|+
T Consensus 402 ~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 402 QLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999996 369999999999999997
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=8.1e-133 Score=1074.68 Aligned_cols=461 Identities=46% Similarity=0.885 Sum_probs=408.6
Q ss_pred cccccCCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEE
Q 009780 48 SKFNRSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFR 127 (526)
Q Consensus 48 ~~~~~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R 127 (526)
..+++.+||++|+||+|||||||||++++||||+|+||.|++ ++. .+..++++||||||||+|||+|||+||+++||
T Consensus 24 ~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~--~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YR 100 (497)
T PLN02998 24 LKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH--AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYR 100 (497)
T ss_pred ccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc--cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEE
Confidence 346678899999999999999999999999999999999987 442 22257899999999999999999999999999
Q ss_pred eeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 009780 128 FSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEF 207 (526)
Q Consensus 128 ~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 207 (526)
|||+||||+|+| +|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++|+++|
T Consensus 101 fSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~f 178 (497)
T PLN02998 101 FSISWSRLLPSG--RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEF 178 (497)
T ss_pred eeccHHhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHh
Confidence 999999999998 488999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEE
Q 009780 208 GDRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGI 287 (526)
Q Consensus 208 g~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~ 287 (526)
||+|++|+|||||++++..||..|.+|||+++...+..|..+++.++.++++||+++|||+||++||+.++..++++||+
T Consensus 179 gdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi 258 (497)
T PLN02998 179 GDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGI 258 (497)
T ss_pred cCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 99999999999999999999999999999754221123666666678899999999999999999999876568899999
Q ss_pred EeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCccee
Q 009780 288 TLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYA 367 (526)
Q Consensus 288 ~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v 367 (526)
+++..+++|.+++|+|++||++.+++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|
T Consensus 259 ~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v 338 (497)
T PLN02998 259 SVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYV 338 (497)
T ss_pred EEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccc
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred ecCCCCCC-CCCCcccCcccccccccCCcccCCCC-CCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCC
Q 009780 368 VDIPVANS-INISYSTDSQANLTAERNGKLIGPKA-ASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLP 445 (526)
Q Consensus 368 ~~~~~~~~-~~~~~~~d~~~~~~~~~~g~~~~~~~-~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~ 445 (526)
+....... ....+..+.... ..+.++.+ .++| +|+|+||+.+|+++++||++|||||||||+++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----- 406 (497)
T PLN02998 339 KDNSSSLKPNLQDFNTDIAVE------MTLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH----- 406 (497)
T ss_pred ccCCCcCCCCccccccccccc------cccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC-----
Confidence 75321100 001111110000 00112223 3678 6999999999999999999988999999998753
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCC-CccccccchHHHHHHHh
Q 009780 446 LKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQN-GLKRYPKHSAIWFKTFL 524 (526)
Q Consensus 446 ~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~~R~~K~S~~~y~~ii 524 (526)
+++++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| +++|+||+|++||+++|
T Consensus 407 -~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii 485 (497)
T PLN02998 407 -SSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFL 485 (497)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999996 47999999999999999
Q ss_pred cC
Q 009780 525 KK 526 (526)
Q Consensus 525 ~~ 526 (526)
+.
T Consensus 486 ~~ 487 (497)
T PLN02998 486 KG 487 (497)
T ss_pred hc
Confidence 73
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.6e-132 Score=1074.09 Aligned_cols=456 Identities=45% Similarity=0.845 Sum_probs=406.7
Q ss_pred ccccCCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEe
Q 009780 49 KFNRSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRF 128 (526)
Q Consensus 49 ~~~~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~ 128 (526)
.+++.+||++|+||+|||||||||++++||||+|+||.+++. .++.++++||||||||+|||+|||+||+++|||
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~-----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRf 96 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC-----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRF 96 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec-----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEE
Confidence 366778999999999999999999999999999999999872 234688999999999999999999999999999
Q ss_pred eccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhc
Q 009780 129 SISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 129 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 208 (526)
||+||||+|+| +|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++||
T Consensus 97 SIsWsRI~P~G--~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 97 SISWSRLIPNG--RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred eccHhhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhC
Confidence 99999999998 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 009780 209 DRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGIT 288 (526)
Q Consensus 209 ~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~ 288 (526)
|+|++|+|||||++++..||..|.. ||+++......|.++++.++.++++||+++|||+||++||++++..++++||++
T Consensus 175 drVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~ 253 (504)
T PLN02814 175 EDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLS 253 (504)
T ss_pred CcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 9999999999999999999999884 886553111246545555778999999999999999999998766789999999
Q ss_pred eeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCcceee
Q 009780 289 LISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAV 368 (526)
Q Consensus 289 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~ 368 (526)
++..+++|++++|+|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+
T Consensus 254 ~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~ 333 (504)
T PLN02814 254 IFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVT 333 (504)
T ss_pred EeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCC--C-CCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCC
Q 009780 369 DIPVANS--I-NISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLP 445 (526)
Q Consensus 369 ~~~~~~~--~-~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~ 445 (526)
....... . ...+..+.+. ...+.++.+++|| +|+|+||+.+|+++++||++|||||||||++..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----- 401 (504)
T PLN02814 334 NRPAPSIFPSMNEGFFTDMGA------YIISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----- 401 (504)
T ss_pred cCCCCCcccccCCCccccccc------ccCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-----
Confidence 5321100 0 0011000000 0012345678999 5999999999999999999988999999999763
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCC-CccccccchHHHHHHHh
Q 009780 446 LKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQN-GLKRYPKHSAIWFKTFL 524 (526)
Q Consensus 446 ~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~~R~~K~S~~~y~~ii 524 (526)
+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++| +++|+||+|++||+++|
T Consensus 402 -~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i 480 (504)
T PLN02814 402 -DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFL 480 (504)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999996 46999999999999999
Q ss_pred c
Q 009780 525 K 525 (526)
Q Consensus 525 ~ 525 (526)
+
T Consensus 481 ~ 481 (504)
T PLN02814 481 N 481 (504)
T ss_pred h
Confidence 7
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-128 Score=1009.20 Aligned_cols=446 Identities=42% Similarity=0.769 Sum_probs=400.5
Q ss_pred CCCCCCceecccccccccCCCcCCCCCCCceeeeccccC-CCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEeecc
Q 009780 53 SCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKY-PDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFSIS 131 (526)
Q Consensus 53 ~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~-~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~ 131 (526)
.+||++|+||+||||+|+|||+++||||+|+||.|.+.. |+++..+.++++|+||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 479999999999999999999999999999999999854 6777788999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 009780 132 WSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRV 211 (526)
Q Consensus 132 Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V 211 (526)
||||+|+++ .+.+|++||+||+++||+|+++||+|+|||+|||+|+||++++|||.|++++++|++||++||+||||+|
T Consensus 82 WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkV 160 (460)
T COG2723 82 WSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKV 160 (460)
T ss_pred EEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999984 1389999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeC
Q 009780 212 KHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLIS 291 (526)
Q Consensus 212 ~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~ 291 (526)
++|+||||||+++..||+.|.+||+..+ .+..+||+||+++|||+||+++|+.. ++.+|||+++.
T Consensus 161 k~W~TFNE~n~~~~~~y~~~~~~p~~~~------------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~ 225 (460)
T COG2723 161 KYWFTFNEPNVVVELGYLYGGHPPGIVD------------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNL 225 (460)
T ss_pred eEEEEecchhhhhcccccccccCCCccC------------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEecc
Confidence 9999999999999999999999998765 26789999999999999999999975 34499999999
Q ss_pred cccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhc--CCCCChhHHhhhcC-CccEEEEecCCcceee
Q 009780 292 DWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRER--LPKFANEQSVMLKG-SFDFIGMNYYSSNYAV 368 (526)
Q Consensus 292 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~ed~~~ikg-~~DFiGiNYYts~~v~ 368 (526)
.+.||.+++|+|+.||+..+.+.+.+|+||.++|+||..+.+.+.+. +|.++++|+++||. ++||||+|||++..+.
T Consensus 226 ~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~ 305 (460)
T COG2723 226 TPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVK 305 (460)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEe
Confidence 99999999999999999999999999999999999999999999775 79999999999986 5899999999954444
Q ss_pred cCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCcc
Q 009780 369 DIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPLKE 448 (526)
Q Consensus 369 ~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 448 (526)
....... ..+..+... ...-+|..+.+++|| +|||+||+.+|+++++||+ +||||||||++..++. ..++
T Consensus 306 ~~~~~~~--~~~~~~~~~----~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~--~~~~ 375 (460)
T COG2723 306 AAEPRYV--SGYGPGGFF----TSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEV--DFDG 375 (460)
T ss_pred eccCCcC--Ccccccccc----cccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCccccc--ccCC
Confidence 3222110 111111000 111135556779999 6999999999999999999 6899999999998763 2233
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccchHHHHHHHhc
Q 009780 449 ALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 449 ~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 525 (526)
|+|++||+||++||.+|++||+|||+|+||++||++||+||++||++|||||+||+++.++|+||+|++|||++|+
T Consensus 376 -i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 376 -INDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred -cCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999993379999999999999996
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.3e-127 Score=1033.26 Aligned_cols=446 Identities=37% Similarity=0.662 Sum_probs=391.4
Q ss_pred CCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEeeccc
Q 009780 53 SCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFSISW 132 (526)
Q Consensus 53 ~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~W 132 (526)
.+||++|+||+|||||||||++++||||+|+||+|++ .++++ ++++||||||||+|||+|||+||+++|||||+|
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~-~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsW 77 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLE-ENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAW 77 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccc-cCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccH
Confidence 4599999999999999999999999999999999987 46653 689999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCccc
Q 009780 133 SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVK 212 (526)
Q Consensus 133 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~ 212 (526)
|||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.||++||| |+
T Consensus 78 sRI~P~G~--g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 78 SRIFPDGY--GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred hhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 99999984 88999999999999999999999999999999999999987 9999999999999999999999999 99
Q ss_pred EEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeCc
Q 009780 213 HWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLISD 292 (526)
Q Consensus 213 ~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~ 292 (526)
+|+|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||++. ++++||++++..
T Consensus 154 ~W~T~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~ 219 (469)
T PRK13511 154 YWTTFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALP 219 (469)
T ss_pred EEEEccchhhhhhcchhhcccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCc
Confidence 9999999999999999999999996431 14689999999999999999999864 789999999999
Q ss_pred ccccCC-CCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhh------cCCCCChhHHhhhcC---CccEEEEecC
Q 009780 293 WMVPYS-NEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRE------RLPKFANEQSVMLKG---SFDFIGMNYY 362 (526)
Q Consensus 293 ~~~P~~-~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~------~lp~ft~ed~~~ikg---~~DFiGiNYY 362 (526)
+++|.+ ++|+|++||++.+++.++||+||++.|+||+.|++.++. ..|.|+++|+++|++ ++||||||||
T Consensus 220 ~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyY 299 (469)
T PRK13511 220 TKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYY 299 (469)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechh
Confidence 999998 899999999999999999999999999999999998742 124899999999974 5899999999
Q ss_pred CcceeecCCCCCCCCCCcccCccc-----ccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCC-CcEEEeecCC
Q 009780 363 SSNYAVDIPVANSINISYSTDSQA-----NLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNN-PTLYITENGY 436 (526)
Q Consensus 363 ts~~v~~~~~~~~~~~~~~~d~~~-----~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~-ppI~ITENG~ 436 (526)
+|.+|+..............+... .........+..+.+++|| +|+|+||+.+|++++++|++ |||||||||+
T Consensus 300 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~ 378 (469)
T PRK13511 300 MSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGL 378 (469)
T ss_pred hcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCc
Confidence 999997532110000000000000 0000000112234567899 59999999999999999997 6899999999
Q ss_pred CCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccch
Q 009780 437 DDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHS 516 (526)
Q Consensus 437 ~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S 516 (526)
+..++ .+.+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++ |++|+||+|
T Consensus 379 ~~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~-~~~R~pK~S 455 (469)
T PRK13511 379 GYKDE--FVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFE-TQERYPKKS 455 (469)
T ss_pred CCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCC-cCccccccH
Confidence 98764 334568999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred HHHHHHHhc
Q 009780 517 AIWFKTFLK 525 (526)
Q Consensus 517 ~~~y~~ii~ 525 (526)
++||+++|+
T Consensus 456 ~~wy~~~i~ 464 (469)
T PRK13511 456 AYWYKKLAE 464 (469)
T ss_pred HHHHHHHHH
Confidence 999999997
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.2e-127 Score=1029.37 Aligned_cols=445 Identities=36% Similarity=0.668 Sum_probs=390.4
Q ss_pred CCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEeeccc
Q 009780 53 SCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFSISW 132 (526)
Q Consensus 53 ~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~W 132 (526)
.+||++|+||+|||||||||+++++|||+|+||.+++ .++++ ++++||||||||+|||+||++||+++|||||+|
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~-~~~~~----~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsW 76 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLE-DNYWY----TAEPASDFYHKYPVDLELAEEYGVNGIRISIAW 76 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhcccc-CCCCC----CCCccCchhhhHHHHHHHHHHcCCCEEEEecch
Confidence 3599999999999999999999999999999999987 35543 678999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCccc
Q 009780 133 SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVK 212 (526)
Q Consensus 133 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~ 212 (526)
|||+|++ +|.+|++||+||++||++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||++||++||+ |+
T Consensus 77 sRI~P~g--~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk 152 (467)
T TIGR01233 77 SRIFPTG--YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VN 152 (467)
T ss_pred hhccCCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 9999998 488999999999999999999999999999999999999987 9999999999999999999999998 99
Q ss_pred EEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeCc
Q 009780 213 HWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLISD 292 (526)
Q Consensus 213 ~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~ 292 (526)
+|+||||||+++..||..|.+|||.+.. .++.++++||+++|||+||++||++. ++++||++++..
T Consensus 153 ~WiT~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~ 218 (467)
T TIGR01233 153 YWTTFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALP 218 (467)
T ss_pred EEEEecchhhhhhccchhcccCCCccch-----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCc
Confidence 9999999999999999999999996321 14689999999999999999999964 789999999999
Q ss_pred ccccCC-CCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhc------CCCCChhHHhhh---cCCccEEEEecC
Q 009780 293 WMVPYS-NEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRER------LPKFANEQSVML---KGSFDFIGMNYY 362 (526)
Q Consensus 293 ~~~P~~-~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~------lp~ft~ed~~~i---kg~~DFiGiNYY 362 (526)
+++|.+ ++|+|++||++.+++.++||+||+++|+||+.|++.++.+ +|.|+++|+++| ++++||||||||
T Consensus 219 ~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyY 298 (467)
T TIGR01233 219 TKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYY 298 (467)
T ss_pred eeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccc
Confidence 999997 8999999999999898999999999999999999988632 378999999999 488999999999
Q ss_pred CcceeecCCCCCCCCCCcccCcccc---cc-cccCCcc-cCCCCCCCCcccChHHHHHHHHHHHHHcCC-CcEEEeecCC
Q 009780 363 SSNYAVDIPVANSINISYSTDSQAN---LT-AERNGKL-IGPKAASNWLYVYPRGFRDLLIYIKEKYNN-PTLYITENGY 436 (526)
Q Consensus 363 ts~~v~~~~~~~~~~~~~~~d~~~~---~~-~~~~g~~-~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~-ppI~ITENG~ 436 (526)
++.+|+................... .. ......+ ..+.+++|| +|+|+||+.+|+++++||++ |||||||||+
T Consensus 299 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~ 377 (467)
T TIGR01233 299 MSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGL 377 (467)
T ss_pred cceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCC
Confidence 9999975321100000000000000 00 0000011 124577899 59999999999999999997 7799999999
Q ss_pred CCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccch
Q 009780 437 DDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHS 516 (526)
Q Consensus 437 ~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S 516 (526)
+..++. .+|.++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++ |++|+||+|
T Consensus 378 ~~~d~~---~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~-t~~R~~K~S 453 (467)
T TIGR01233 378 GYKDEF---VDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFD-TQERYPKKS 453 (467)
T ss_pred CCCCCC---CCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCC-CCccccccH
Confidence 987642 3578999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred HHHHHHHhc
Q 009780 517 AIWFKTFLK 525 (526)
Q Consensus 517 ~~~y~~ii~ 525 (526)
++|||++|+
T Consensus 454 ~~wy~~ii~ 462 (467)
T TIGR01233 454 AHWYKKLAE 462 (467)
T ss_pred HHHHHHHHH
Confidence 999999997
No 8
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.4e-126 Score=1024.32 Aligned_cols=443 Identities=30% Similarity=0.559 Sum_probs=385.9
Q ss_pred CCCCCceecccccccccCCCcCCCCCCCceeeecc---ccCCCCCC----CCC--CCCcccchhhchHHHHHHHHHcCCC
Q 009780 54 CFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFT---HKYPDRIK----NHD--DGDIAVDFYHRYKEDVKIMKEMNLD 124 (526)
Q Consensus 54 ~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~---~~~~~~~~----~~~--~~~~a~d~yh~y~eDi~lm~~lG~~ 124 (526)
+||++|+||+|||||||||++++||||+|+||.|+ ++.|+++. ++. ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 42355553 222 5789999999999999999999999
Q ss_pred eEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHH
Q 009780 125 AFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCF 204 (526)
Q Consensus 125 ~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~ 204 (526)
+|||||+||||+|+|+ .+.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||
T Consensus 83 ~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f 161 (476)
T PRK09589 83 CFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVF 161 (476)
T ss_pred EEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHH
Confidence 9999999999999974 256999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccEEEeccCCcccccc-----Ccc-cCc-CCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 009780 205 KEFGDRVKHWITLNEPHSYSSN-----GYN-KGT-DAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKY 277 (526)
Q Consensus 205 ~~~g~~V~~W~t~NEp~~~~~~-----~y~-~G~-~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~ 277 (526)
++|||+|++|+||||||+++.. ||. .|. +|||.. ..+..++++||+++|||+|++++|++.
T Consensus 162 ~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~------------~~~~~~~~~h~~llAha~A~~~~~~~~ 229 (476)
T PRK09589 162 TRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED------------REQIMYQAAHYELVASALAVKTGHEIN 229 (476)
T ss_pred HHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc------------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998766 333 333 355531 124579999999999999999999864
Q ss_pred hccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhc--CCCCChhHHhhh-cCCc
Q 009780 278 QAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRER--LPKFANEQSVML-KGSF 354 (526)
Q Consensus 278 ~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~ed~~~i-kg~~ 354 (526)
++++||++++..+++|.+++|+|++||++.+.+ +.||+||+++|+||+.|++.++++ .|.|+++|+++| ++++
T Consensus 230 ---~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~ 305 (476)
T PRK09589 230 ---PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCV 305 (476)
T ss_pred ---CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 688999999999999999999999999998854 679999999999999999999864 489999999988 5899
Q ss_pred cEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeec
Q 009780 355 DFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITEN 434 (526)
Q Consensus 355 DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITEN 434 (526)
||||||||+|.+|+.....+. .....+ .. ... .|..+.+++|| +|+|+||+.+|+++++||++ |||||||
T Consensus 306 DFlGiNyYts~~v~~~~~~~~--~~~~~~--~~--~~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItEN 375 (476)
T PRK09589 306 DYIGFSYYMSFATKFHEDNPQ--LDYVET--RD--LVS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVEN 375 (476)
T ss_pred CEEEEecccCcccccCCCCCC--CCcccc--cc--ccc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeC
Confidence 999999999999975321100 000000 00 001 23445677999 69999999999999999997 5999999
Q ss_pred CCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHH-HcCCCeEEEeecccccccccCCC-CCCccceEEEeCCC----C
Q 009780 435 GYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAI-KEGVNVKGYFAWSLLDNFEWYSG-YSVRFGLYFVDYQN----G 508 (526)
Q Consensus 435 G~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai-~dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~----~ 508 (526)
|++..++ .+.+++++|++||+||++||++|++|| +|||||+|||+|||+|||||.+| |++|||||+||++| |
T Consensus 376 G~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t 453 (476)
T PRK09589 376 GFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGT 453 (476)
T ss_pred CcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcc
Confidence 9998765 345788999999999999999999999 89999999999999999999999 99999999999996 4
Q ss_pred ccccccchHHHHHHHhc
Q 009780 509 LKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 509 ~~R~~K~S~~~y~~ii~ 525 (526)
++|+||+|++|||++|+
T Consensus 454 ~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 454 LERSRKKSFYWYRDVIA 470 (476)
T ss_pred cccccccHHHHHHHHHH
Confidence 69999999999999996
No 9
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.4e-126 Score=1024.88 Aligned_cols=444 Identities=30% Similarity=0.519 Sum_probs=390.1
Q ss_pred cCCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCC--C----------C--CCCCcccchhhchHHHHHH
Q 009780 52 RSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIK--N----------H--DDGDIAVDFYHRYKEDVKI 117 (526)
Q Consensus 52 ~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~--~----------~--~~~~~a~d~yh~y~eDi~l 117 (526)
..+||++|+||+|||||||||++++||||+|+||+|++ .++++. + + .++++||||||||+|||+|
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~L 81 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPI-GEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIAL 81 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-CcCcccccccccccccccccccCCCCcccchHHhhHHHHHH
Confidence 45699999999999999999999999999999999987 355441 1 1 2589999999999999999
Q ss_pred HHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHH
Q 009780 118 MKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQ 197 (526)
Q Consensus 118 m~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~ 197 (526)
||+||+++|||||+||||+|+|+ .|.+|++||+||++||++|+++||+|+|||+|||+|+||++++|||+|++++++|+
T Consensus 82 m~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~ 160 (478)
T PRK09593 82 FAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYE 160 (478)
T ss_pred HHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHH
Confidence 99999999999999999999974 25799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccEEEeccCCccccccCcc-cCc-CCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 009780 198 DYAELCFKEFGDRVKHWITLNEPHSYSSNGYN-KGT-DAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKE 275 (526)
Q Consensus 198 ~ya~~~~~~~g~~V~~W~t~NEp~~~~~~~y~-~G~-~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~ 275 (526)
+||++|+++|||+|++|+||||||+++..||. .|. +|||..+ .++.++|+||+++|||+||++||+
T Consensus 161 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~------------~~~~~~a~h~~llAHa~A~~~~~~ 228 (478)
T PRK09593 161 RLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK------------EQVKYQAAHHELVASAIATKIAHE 228 (478)
T ss_pred HHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888876 454 3676421 256899999999999999999998
Q ss_pred HhhccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhh--cCCCCChhHHhhhc-C
Q 009780 276 KYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRE--RLPKFANEQSVMLK-G 352 (526)
Q Consensus 276 ~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~--~lp~ft~ed~~~ik-g 352 (526)
.. |++|||++++..+++|.+++|+|++||++.+ +.+.||+||++.|+||+.|++.+++ .+|.|+++|+++|+ +
T Consensus 229 ~~---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g 304 (478)
T PRK09593 229 VD---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKEN 304 (478)
T ss_pred hC---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 53 7899999999999999999999999999887 4578999999999999999999975 46889999999996 8
Q ss_pred CccEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEe
Q 009780 353 SFDFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYIT 432 (526)
Q Consensus 353 ~~DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~IT 432 (526)
++||||||||++.+|+....... .. .... ..... .|..+.+++|| +|+|+||+.+|+++++||++ |||||
T Consensus 305 ~~DFlGiNyYt~~~v~~~~~~~~---~~--~~~~-~~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~It 374 (478)
T PRK09593 305 TVDFISFSYYSSRVASGDPKVNE---KT--AGNI-FASLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQK-PMFIV 374 (478)
T ss_pred CCCEEEEecccCcccccCCCCCC---CC--CCCc-ccccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCC-CEEEE
Confidence 99999999999999975321100 00 0000 00001 24445678999 69999999999999999997 69999
Q ss_pred ecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHH-cCCCeEEEeecccccccccCCC-CCCccceEEEeCCC---
Q 009780 433 ENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIK-EGVNVKGYFAWSLLDNFEWYSG-YSVRFGLYFVDYQN--- 507 (526)
Q Consensus 433 ENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~--- 507 (526)
|||++..++ .+.+|+++|++||+||++||++|++||+ |||||+|||+|||+|||||..| |++|||||+||++|
T Consensus 375 ENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~ 452 (478)
T PRK09593 375 ENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGK 452 (478)
T ss_pred cCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCC
Confidence 999998765 3457889999999999999999999995 9999999999999999999999 99999999999996
Q ss_pred -CccccccchHHHHHHHhc
Q 009780 508 -GLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 508 -~~~R~~K~S~~~y~~ii~ 525 (526)
|++|+||+|++||+++|+
T Consensus 453 ~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 453 GTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred cccceecccHHHHHHHHHH
Confidence 479999999999999996
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=5.4e-126 Score=1019.14 Aligned_cols=446 Identities=30% Similarity=0.571 Sum_probs=388.2
Q ss_pred cccCCCCCCceecccccccccCCCcCCCCCCCceeeecc---ccCCCCCC----CC--CCCCcccchhhchHHHHHHHHH
Q 009780 50 FNRSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFT---HKYPDRIK----NH--DDGDIAVDFYHRYKEDVKIMKE 120 (526)
Q Consensus 50 ~~~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~---~~~~~~~~----~~--~~~~~a~d~yh~y~eDi~lm~~ 120 (526)
|++.+||++|+||+||||||||||+++||||+|+||+|+ +..|+++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 356779999999999999999999999999999999998 42355542 23 2678999999999999999999
Q ss_pred cCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHH
Q 009780 121 MNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYA 200 (526)
Q Consensus 121 lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya 200 (526)
||+|+|||||+||||+|+|+ .+.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 81 lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya 159 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFA 159 (477)
T ss_pred cCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHH
Confidence 99999999999999999974 26699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccEEEeccCCccc-----cccCccc-CcC-CCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009780 201 ELCFKEFGDRVKHWITLNEPHSY-----SSNGYNK-GTD-APGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVY 273 (526)
Q Consensus 201 ~~~~~~~g~~V~~W~t~NEp~~~-----~~~~y~~-G~~-pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~ 273 (526)
++||++|||+|++|+||||||++ +..||.. |.+ ||+.. +.++.++++||+++|||+||+++
T Consensus 160 ~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~------------~~~~~~~~~h~~llAHa~A~~~~ 227 (477)
T PRK15014 160 EVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN------------PEETMYQVLHHQFVASALAVKAA 227 (477)
T ss_pred HHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 6678874 664 45421 12458999999999999999999
Q ss_pred HHHhhccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcC--CCCChhHHhhh-
Q 009780 274 KEKYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERL--PKFANEQSVML- 350 (526)
Q Consensus 274 r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~l--p~ft~ed~~~i- 350 (526)
|++. ++++||++++..+++|.+++|+|++||++... ...+|+||++.|+||+.|++.++++. |.++++|+++|
T Consensus 228 ~~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~ 303 (477)
T PRK15014 228 RRIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLR 303 (477)
T ss_pred HHhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHh
Confidence 9865 68999999999999999999999999998763 22359999999999999999998764 78999999998
Q ss_pred cCCccEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEE
Q 009780 351 KGSFDFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLY 430 (526)
Q Consensus 351 kg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ 430 (526)
++++||||||||+|.+|+...........+. . ... .+..+.+++|| +|+|+||+.+|+++++||++ |||
T Consensus 304 ~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~-----~--~~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ 372 (477)
T PRK15014 304 EGTCDYLGFSYYMTNAVKAEGGTGDAISGFE-----G--SVP--NPYVKASDWGW-QIDPVGLRYALCELYERYQK-PLF 372 (477)
T ss_pred cCCCCEEEEcceeCeeeccCCCCCCCccccc-----c--ccC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEE
Confidence 5899999999999999975321100000000 0 001 13334667999 59999999999999999997 599
Q ss_pred EeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHH-cCCCeEEEeecccccccccCCC-CCCccceEEEeCCC-
Q 009780 431 ITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIK-EGVNVKGYFAWSLLDNFEWYSG-YSVRFGLYFVDYQN- 507 (526)
Q Consensus 431 ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~- 507 (526)
|||||++..++ .+.+|+|+|++||+||++||++|++||+ |||||+||++|||+|||||.+| |++|||||+||++|
T Consensus 373 ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~ 450 (477)
T PRK15014 373 IVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD 450 (477)
T ss_pred EeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCC
Confidence 99999998764 3467889999999999999999999995 9999999999999999999999 99999999999996
Q ss_pred ---CccccccchHHHHHHHhc
Q 009780 508 ---GLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 508 ---~~~R~~K~S~~~y~~ii~ 525 (526)
+++|+||+|++||+++|+
T Consensus 451 ~~~~~~R~pK~S~~wy~~ii~ 471 (477)
T PRK15014 451 GTGDMSRSRKKSFNWYKEVIA 471 (477)
T ss_pred CCcccceecccHHHHHHHHHH
Confidence 479999999999999996
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=8.8e-128 Score=1034.58 Aligned_cols=447 Identities=50% Similarity=0.922 Sum_probs=388.1
Q ss_pred cCCCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEeecc
Q 009780 52 RSCFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFSIS 131 (526)
Q Consensus 52 ~~~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~ 131 (526)
+.+||++|+||+|||||||||++++||||+|+||.|++. |+++.+++++++||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~ 80 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHE-PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSIS 80 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHS-TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccc-cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecc
Confidence 357999999999999999999999999999999999994 8888899999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 009780 132 WSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRV 211 (526)
Q Consensus 132 Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V 211 (526)
|+||+|+|. +|.+|++||++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|
T Consensus 81 W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V 158 (455)
T PF00232_consen 81 WSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRV 158 (455)
T ss_dssp HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTB
T ss_pred hhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999973 39999999999999999999999999999999999999998 6999999999999999999999999999
Q ss_pred cEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeC
Q 009780 212 KHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLIS 291 (526)
Q Consensus 212 ~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~ 291 (526)
++|+|||||++++..||..|.+|||..+ .++.++++||+++|||+|+++||+++ ++++||++++.
T Consensus 159 ~~w~T~NEp~~~~~~~y~~g~~~p~~~~------------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~ 223 (455)
T PF00232_consen 159 KYWITFNEPNVFALLGYLYGGFPPGRDS------------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNF 223 (455)
T ss_dssp SEEEEEETHHHHHHHHHTSSSSTTCSST------------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEE
T ss_pred ceEEeccccceeeccccccccccccccc------------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccc
Confidence 9999999999999999999999999654 36789999999999999999999986 79999999999
Q ss_pred cccccCCCCHHhH-HHHHHHHHHhcccccccccccccchHhHHHHhhc--CCCCChhHHhhhcCCccEEEEecCCcceee
Q 009780 292 DWMVPYSNEKPNV-EAADRALDFFLGMYMDPLIYGNYPFIMRTLVRER--LPKFANEQSVMLKGSFDFIGMNYYSSNYAV 368 (526)
Q Consensus 292 ~~~~P~~~~~~D~-~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~ed~~~ikg~~DFiGiNYYts~~v~ 368 (526)
.+++|.+++++|. +||++.++++++||+||++.|+||..|+++++++ +|.||++|++.|++++||||||||++.+|+
T Consensus 224 ~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~ 303 (455)
T PF00232_consen 224 SPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVR 303 (455)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEE
T ss_pred cccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeec
Confidence 9999999887776 8999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCcc
Q 009780 369 DIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPLKE 448 (526)
Q Consensus 369 ~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 448 (526)
..+...... ..... .... ..-++.++.++++| +++|+||+++|++++++|++|||+|||||+++.++. .++
T Consensus 304 ~~~~~~~~~-~~~~~--~~~~--~~~~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~---~~~ 374 (455)
T PF00232_consen 304 ADPNPSSPP-SYDSD--APFG--QPYNPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEV---DDG 374 (455)
T ss_dssp ESSSSTSST-THEEE--ESEE--EECETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTC---TTS
T ss_pred cCccccccc-cccCC--cccc--ccccccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccc---ccc
Confidence 876332111 10000 0000 00024456788999 599999999999999999989999999999998753 238
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccchHHHHHHHhc
Q 009780 449 ALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 449 ~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 525 (526)
+++|+.||+||++||++|++||+|||||+||++|||+|||||.+||++||||++||+.+|++|+||+|++||+++|+
T Consensus 375 ~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 375 KVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp HBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999544799999999999999997
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=4.4e-125 Score=1010.45 Aligned_cols=442 Identities=31% Similarity=0.561 Sum_probs=392.2
Q ss_pred CCCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCC------------CCC--CCCcccchhhchHHHHHHHH
Q 009780 54 CFPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIK------------NHD--DGDIAVDFYHRYKEDVKIMK 119 (526)
Q Consensus 54 ~fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~------------~~~--~~~~a~d~yh~y~eDi~lm~ 119 (526)
+||++|+||+||||||||||+++||||+|+||.+++ .|+++. ++. ++++||||||||+|||+||+
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~ 81 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPH-GEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMA 81 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhcccc-CCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHH
Confidence 599999999999999999999999999999999998 466552 222 67899999999999999999
Q ss_pred HcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHH
Q 009780 120 EMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDY 199 (526)
Q Consensus 120 ~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~y 199 (526)
+||+|+|||||+||||+|+++ .+.+|++||+||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++|
T Consensus 82 ~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~y 160 (474)
T PRK09852 82 EMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRY 160 (474)
T ss_pred HcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999974 2568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccEEEeccCCccccccCcc-cCc-CCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 009780 200 AELCFKEFGDRVKHWITLNEPHSYSSNGYN-KGT-DAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKY 277 (526)
Q Consensus 200 a~~~~~~~g~~V~~W~t~NEp~~~~~~~y~-~G~-~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~ 277 (526)
|+.|+++|||+|++|+||||||+++..||. .|. +|||... .+..++++||+++|||+||+++|++.
T Consensus 161 a~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~------------~~~~~~~~hn~llAHa~A~~~~~~~~ 228 (474)
T PRK09852 161 ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ------------DQVKYQAAHHELVASALATKIAHEVN 228 (474)
T ss_pred HHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc------------hHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999996 564 5887422 24579999999999999999999865
Q ss_pred hccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhc--CCCCChhHHhhhcCCcc
Q 009780 278 QAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRER--LPKFANEQSVMLKGSFD 355 (526)
Q Consensus 278 ~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~ed~~~ikg~~D 355 (526)
++++||++++..+++|.+++|+|++||++.+ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++|
T Consensus 229 ---~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~D 304 (474)
T PRK09852 229 ---PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVD 304 (474)
T ss_pred ---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCC
Confidence 6899999999999999999999999998876 55789999999999999999999864 79999999999999999
Q ss_pred EEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecC
Q 009780 356 FIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENG 435 (526)
Q Consensus 356 FiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG 435 (526)
|||||||+|.+|+....... .. ...... ... .|..+.+++|| +|+|+||+.+|+++++||++ ||||||||
T Consensus 305 FlGiNyYt~~~v~~~~~~~~--~~--~~~~~~--~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG 374 (474)
T PRK09852 305 FVSFSYYASRCASAEMNANN--SS--AANVVK--SLR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQK-PLFLVENG 374 (474)
T ss_pred EEEEccccCeecccCCCCCC--CC--cCCcee--ccc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCC-CEEEeCCC
Confidence 99999999999975321000 00 000000 001 24455678999 69999999999999999997 59999999
Q ss_pred CCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCC-CCCccceEEEeCCC----Ccc
Q 009780 436 YDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSG-YSVRFGLYFVDYQN----GLK 510 (526)
Q Consensus 436 ~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~----~~~ 510 (526)
++..++ .+.+++|+|++||+||++||++|++||++||||+|||+|||||||||..| |++|||||+||++| |++
T Consensus 375 ~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~ 452 (474)
T PRK09852 375 LGAKDE--IAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLT 452 (474)
T ss_pred CCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccc
Confidence 998765 34578899999999999999999999999999999999999999999999 99999999999996 479
Q ss_pred ccccchHHHHHHHhc
Q 009780 511 RYPKHSAIWFKTFLK 525 (526)
Q Consensus 511 R~~K~S~~~y~~ii~ 525 (526)
|+||+|++||+++|+
T Consensus 453 R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 453 RTRKKSFWWYKKVIA 467 (474)
T ss_pred eecccHHHHHHHHHH
Confidence 999999999999996
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=3.8e-122 Score=980.92 Aligned_cols=427 Identities=46% Similarity=0.862 Sum_probs=392.6
Q ss_pred CCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEeeccccc
Q 009780 55 FPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFSISWSR 134 (526)
Q Consensus 55 fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~Wsr 134 (526)
||++|+||+|||||||||+++++|||+|+||.+++ .|+++.++.++++||||||+|+|||+||++||+++|||||+|||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsr 79 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSH-TPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPR 79 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheecc-CCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhh
Confidence 89999999999999999999999999999999988 47877777789999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccEE
Q 009780 135 LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHW 214 (526)
Q Consensus 135 i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W 214 (526)
|+|+| +|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||++|++|
T Consensus 80 i~p~g--~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w 156 (427)
T TIGR03356 80 IFPEG--TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHW 156 (427)
T ss_pred cccCC--CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEE
Confidence 99997 388999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeCccc
Q 009780 215 ITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLISDWM 294 (526)
Q Consensus 215 ~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~ 294 (526)
+|+||||+++..||..|.+||+.++ .+..++++||+++|||+|+++||++. ++++||++++..++
T Consensus 157 ~t~NEp~~~~~~~y~~G~~~P~~~~------------~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~ 221 (427)
T TIGR03356 157 ITLNEPWCSAFLGYGLGVHAPGLRD------------LRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPV 221 (427)
T ss_pred EEecCcceecccchhhccCCCCCcc------------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCee
Confidence 9999999999999999999998543 13578999999999999999999975 68999999999999
Q ss_pred ccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCcceeecCCCCC
Q 009780 295 VPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAVDIPVAN 374 (526)
Q Consensus 295 ~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~~~~~~~ 374 (526)
+|.+++|+|+.||++.+++.++||+||++.|+||..|++.++. +|.||++|++++++++||||||||++.+|+......
T Consensus 222 ~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~ 300 (427)
T TIGR03356 222 YPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG 300 (427)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC
Confidence 9999999999999999999899999999999999999999974 799999999999999999999999999997532110
Q ss_pred CCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCccccCChh
Q 009780 375 SINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPLKEALKDPM 454 (526)
Q Consensus 375 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~ 454 (526)
... . .. .+..+.+++|| +|+|+||+.+|+++++||++|||||||||++..++ .+ +|+++|++
T Consensus 301 ---~~~-----~----~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~ 362 (427)
T TIGR03356 301 ---AGF-----V----EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPE 362 (427)
T ss_pred ---CCc-----c----cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHH
Confidence 000 0 00 12234567899 69999999999999999998889999999998764 23 68899999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccchHHHH
Q 009780 455 RLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHSAIWF 520 (526)
Q Consensus 455 Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S~~~y 520 (526)
||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++ |++|+||+|++||
T Consensus 363 Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~-~~~R~~K~S~~wy 427 (427)
T TIGR03356 363 RIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE-TQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCC-CCcccccceeeeC
Confidence 9999999999999999999999999999999999999999999999999999 5999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.64 E-value=3.5e-14 Score=142.18 Aligned_cols=250 Identities=16% Similarity=0.199 Sum_probs=161.3
Q ss_pred cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhc
Q 009780 131 SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQP--FVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 131 ~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p--~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 208 (526)
-|++|+|++ |++|+ +..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 2 kW~~~ep~~---G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 2 KWDSTEPSR---GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CcccccCCC---CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhC
Confidence 599999998 99999 66788999999999994 4456788899998743 2 56788999999999999999
Q ss_pred CcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 009780 209 DRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGIT 288 (526)
Q Consensus 209 ~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~ 288 (526)
++|..|.++|||......|+....| +.+.-.-. -..|.++.|+.. |++++-+.
T Consensus 72 g~i~~wdV~NE~~~~~~~~~~~~~w----------------------~~~~G~~~--i~~af~~ar~~~---P~a~l~~N 124 (254)
T smart00633 72 GKIYAWDVVNEALHDNGSGLRRSVW----------------------YQILGEDY--IEKAFRYAREAD---PDAKLFYN 124 (254)
T ss_pred CcceEEEEeeecccCCCcccccchH----------------------HHhcChHH--HHHHHHHHHHhC---CCCEEEEe
Confidence 9999999999998532111111011 11110001 224566667654 56666432
Q ss_pred eeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCcceee
Q 009780 289 LISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAV 368 (526)
Q Consensus 289 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~ 368 (526)
......+ . .. ......+ .+.+. .-..++|-||++....
T Consensus 125 -dy~~~~~---~-~k---~~~~~~~------------------v~~l~------------~~g~~iDgiGlQ~H~~---- 162 (254)
T smart00633 125 -DYNTEEP---N-AK---RQAIYEL------------------VKKLK------------AKGVPIDGIGLQSHLS---- 162 (254)
T ss_pred -ccCCcCc---c-HH---HHHHHHH------------------HHHHH------------HCCCccceeeeeeeec----
Confidence 1111111 0 00 1111111 11111 1123579999952210
Q ss_pred cCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCcc
Q 009780 369 DIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPLKE 448 (526)
Q Consensus 369 ~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 448 (526)
. . ...|..|...|+.+.+. +. ||+|||.++...+.
T Consensus 163 ~-~-----------------------------------~~~~~~~~~~l~~~~~~-g~-pi~iTE~dv~~~~~------- 197 (254)
T smart00633 163 L-G-----------------------------------SPNIAEIRAALDRFASL-GL-EIQITELDISGYPN------- 197 (254)
T ss_pred C-C-----------------------------------CCCHHHHHHHHHHHHHc-CC-ceEEEEeecCCCCc-------
Confidence 0 0 01245799999999765 65 79999999987521
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccceEEEeCCCCccccccchHHH
Q 009780 449 ALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFGLYFVDYQNGLKRYPKHSAIW 519 (526)
Q Consensus 449 ~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~~K~S~~~ 519 (526)
...+.+++++.+..+.+. . .|.|.++|.+.|..+|..+ .+.||+.=|+ +||+++++
T Consensus 198 ---~~~qA~~~~~~l~~~~~~---p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~------~~kpa~~~ 253 (254)
T smart00633 198 ---PQAQAADYEEVFKACLAH---P-AVTGVTVWGVTDKYSWLDG--GAPLLFDANY------QPKPAYWA 253 (254)
T ss_pred ---HHHHHHHHHHHHHHHHcC---C-CeeEEEEeCCccCCcccCC--CCceeECCCC------CCChhhhc
Confidence 156777888777776542 2 7899999999999999765 5678885444 38887764
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.43 E-value=3.1e-13 Score=142.65 Aligned_cols=109 Identities=25% Similarity=0.404 Sum_probs=90.4
Q ss_pred hchHHHHHHHHHcCCCeEEe-eccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcC--
Q 009780 109 HRYKEDVKIMKEMNLDAFRF-SISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYG-- 185 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~-si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~g-- 185 (526)
..+++|+++|+++|+|++|+ .++|+++||++ |++|+ +++|++|+.+.++||++++.+.+...|.||.+++.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 46899999999999999997 56999999999 99999 78999999999999999999999999999987531
Q ss_pred -------------C-----CCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCccc
Q 009780 186 -------------G-----FLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPHSY 223 (526)
Q Consensus 186 -------------g-----w~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~~ 223 (526)
+ ..+|.+++.+.++++.++++|++ .|..|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 1 33678899999999999999997 58999999999754
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.20 E-value=9e-09 Score=106.32 Aligned_cols=251 Identities=18% Similarity=0.236 Sum_probs=142.7
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccC---CCCchhhHhhcCCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFH---WDLPQALEDDYGGFL 188 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h---~~~P~~l~~~~ggw~ 188 (526)
++=+++||+.|+|++|+-+ | +.|.. .|..|. +.-..+..+.+++||+.+|++|- |.=|.--.. .-.|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~-P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK-PAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC-CccCC
Confidence 4458999999999999988 4 44554 266666 77789999999999999999974 333422111 15788
Q ss_pred C---hHHHHHHHHHHHHHHHHhcC---cccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHH
Q 009780 189 S---PRIVADFQDYAELCFKEFGD---RVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQ 262 (526)
Q Consensus 189 ~---~~~~~~f~~ya~~~~~~~g~---~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~ 262 (526)
+ .+..+.-.+|++.+.+.+.+ .++++++=||.|.-.. ||.|... -+.-.-.+
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~---------------~~~~~a~l 155 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPS---------------NWDNLAKL 155 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT----------------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCcc---------------CHHHHHHH
Confidence 8 57778888999999988854 6899999999873221 4544321 23334445
Q ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCC
Q 009780 263 LLSHAAAVKVYKEKYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKF 342 (526)
Q Consensus 263 llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~f 342 (526)
+.|=.+|| |+.. ++.+|.+.+.. +.|.... .||.|-+.
T Consensus 156 l~ag~~AV---r~~~---p~~kV~lH~~~---------~~~~~~~--------~~~f~~l~------------------- 193 (332)
T PF07745_consen 156 LNAGIKAV---REVD---PNIKVMLHLAN---------GGDNDLY--------RWFFDNLK------------------- 193 (332)
T ss_dssp HHHHHHHH---HTHS---STSEEEEEES----------TTSHHHH--------HHHHHHHH-------------------
T ss_pred HHHHHHHH---HhcC---CCCcEEEEECC---------CCchHHH--------HHHHHHHH-------------------
Confidence 55544554 5443 67788665542 1222111 12222111
Q ss_pred ChhHHhhhcCCccEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHH
Q 009780 343 ANEQSVMLKGSFDFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKE 422 (526)
Q Consensus 343 t~ed~~~ikg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~ 422 (526)
......|.||++||.- |. -....|+..|+.+.+
T Consensus 194 ------~~g~d~DviGlSyYP~----------------------------------------w~-~~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 194 ------AAGVDFDVIGLSYYPF----------------------------------------WH-GTLEDLKNNLNDLAS 226 (332)
T ss_dssp ------HTTGG-SEEEEEE-ST----------------------------------------TS-T-HHHHHHHHHHHHH
T ss_pred ------hcCCCcceEEEecCCC----------------------------------------Cc-chHHHHHHHHHHHHH
Confidence 1123569999999941 10 134579999999999
Q ss_pred HcCCCcEEEeecCCCCCCCCCCCCcccc-----------CChhhHHHHHHHHHHHHHHHHc--CCCeEEEeecccccc
Q 009780 423 KYNNPTLYITENGYDDFNNATLPLKEAL-----------KDPMRLDYFKNHLLFLRKAIKE--GVNVKGYFAWSLLDN 487 (526)
Q Consensus 423 rY~~ppI~ITENG~~~~~~~~~~~~~~i-----------~D~~Ri~yl~~hL~~v~~Ai~d--Gv~v~GY~~WSl~Dn 487 (526)
||++ ||+|+|.|++...+........+ .-.-..+||+ .+.+++.+ +-...|.|+|-..-.
T Consensus 227 ry~K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~----~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 227 RYGK-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLR----DLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp HHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHH----HHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred HhCC-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHH----HHHHHHHHhccCCeEEEEeeccccc
Confidence 9987 69999999887621100000010 1123445554 44455543 679999999966544
No 17
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.11 E-value=2.9e-10 Score=114.09 Aligned_cols=109 Identities=17% Similarity=0.321 Sum_probs=91.3
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccc-cCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCC-
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLL-PNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGF- 187 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~-P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw- 187 (526)
-.++|++.|+++|+|++|+-|.|..++ |.+ .+.++.+.++.++++|+.+.++||.++|++++. |.|.... ++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 569999999999999999999998888 565 256999999999999999999999999999885 7774433 233
Q ss_pred CChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCccc
Q 009780 188 LSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPHSY 223 (526)
Q Consensus 188 ~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~~ 223 (526)
......+.|.++.+.++++|++ .|..|.++|||+..
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 3345678899999999999943 68999999999865
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.11 E-value=2.8e-08 Score=102.92 Aligned_cols=302 Identities=19% Similarity=0.222 Sum_probs=177.1
Q ss_pred CCCCceecccccccccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEee--ccc
Q 009780 55 FPKGFIFGTAAAAYQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFS--ISW 132 (526)
Q Consensus 55 fP~~FlwG~atsa~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~s--i~W 132 (526)
...+|.+|+|.++.++++.. .|++- -.-.+|..-.. .-|
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-----------------------------------~~~~~----~~~~Fn~~t~eN~~Kw 46 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-----------------------------------RYREL----FAKHFNSVTPENEMKW 46 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-----------------------------------HHHHH----HHHH-SEEEESSTTSH
T ss_pred HhccCCEEEEechhHcCCcH-----------------------------------HHHHH----HHHhCCeeeeccccch
Confidence 35678999999999988730 01111 11234555544 689
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE--EccCCCCchhhHhhcCCCCChH---HHHHHHHHHHHHHHHh
Q 009780 133 SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV--TIFHWDLPQALEDDYGGFLSPR---IVADFQDYAELCFKEF 207 (526)
Q Consensus 133 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v--tL~h~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~ 207 (526)
..++|.+ |.+|+ +-.|.+++-++++||++-- .+.|-..|.|+... ..+...+ ..+...+|.+.++.||
T Consensus 47 ~~~e~~~---g~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y 119 (320)
T PF00331_consen 47 GSIEPEP---GRFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRY 119 (320)
T ss_dssp HHHESBT---TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCC---CccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHh
Confidence 9999998 99999 5679999999999999763 45577899999863 2233333 7888999999999999
Q ss_pred cC--cccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeE
Q 009780 208 GD--RVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKI 285 (526)
Q Consensus 208 g~--~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~I 285 (526)
++ +|..|=++|||-.... .+-|.++ ...++++=. ---..|.+.-|+.. |+++.
T Consensus 120 ~~~g~i~~WDVvNE~i~~~~-------~~~~~r~-------------~~~~~~lG~--~yi~~aF~~A~~~~---P~a~L 174 (320)
T PF00331_consen 120 KDKGRIYAWDVVNEAIDDDG-------NPGGLRD-------------SPWYDALGP--DYIADAFRAAREAD---PNAKL 174 (320)
T ss_dssp TTTTTESEEEEEES-B-TTS-------SSSSBCT-------------SHHHHHHTT--CHHHHHHHHHHHHH---TTSEE
T ss_pred ccccceEEEEEeeecccCCC-------ccccccC-------------ChhhhcccH--hHHHHHHHHHHHhC---CCcEE
Confidence 95 8999999999964321 0001000 111222110 00123444445544 45555
Q ss_pred EEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcC-CccEEEEecCCc
Q 009780 286 GITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKG-SFDFIGMNYYSS 364 (526)
Q Consensus 286 G~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg-~~DFiGiNYYts 364 (526)
=+... ....+ +++ ..+. .|.+.+.+ +| ++|=||++-.-.
T Consensus 175 ~~NDy-~~~~~----------~k~-~~~~---------------~lv~~l~~-------------~gvpIdgIG~Q~H~~ 214 (320)
T PF00331_consen 175 FYNDY-NIESP----------AKR-DAYL---------------NLVKDLKA-------------RGVPIDGIGLQSHFD 214 (320)
T ss_dssp EEEES-STTST----------HHH-HHHH---------------HHHHHHHH-------------TTHCS-EEEEEEEEE
T ss_pred Eeccc-cccch----------HHH-HHHH---------------HHHHHHHh-------------CCCccceechhhccC
Confidence 44221 11111 111 1110 01111111 12 478899853310
Q ss_pred ceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCC
Q 009780 365 NYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATL 444 (526)
Q Consensus 365 ~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~ 444 (526)
. ...|..+...|+++.+ .+ .||.|||.-+...+...
T Consensus 215 ~-----------------------------------------~~~~~~i~~~l~~~~~-~G-l~i~ITElDv~~~~~~~- 250 (320)
T PF00331_consen 215 A-----------------------------------------GYPPEQIWNALDRFAS-LG-LPIHITELDVRDDDNPP- 250 (320)
T ss_dssp T-----------------------------------------TSSHHHHHHHHHHHHT-TT-SEEEEEEEEEESSSTTS-
T ss_pred C-----------------------------------------CCCHHHHHHHHHHHHH-cC-CceEEEeeeecCCCCCc-
Confidence 0 0017789999999855 46 47999999988764210
Q ss_pred CCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCC-ccceEEEeCCCCccccccchHHHHHH
Q 009780 445 PLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSV-RFGLYFVDYQNGLKRYPKHSAIWFKT 522 (526)
Q Consensus 445 ~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~-RfGL~~VD~~~~~~R~~K~S~~~y~~ 522 (526)
..-.+..+.+++++.+..+...-.. .|.|.+.|.+.|..+|.....+ +=+|+.- .-+||++++.+.+
T Consensus 251 ---~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd~------~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 251 ---DAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFDE------DYQPKPAYDAIVD 318 (320)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-T------TSBB-HHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeECC------CcCCCHHHHHHHh
Confidence 0122456777777777666544222 8999999999999999766333 3355533 3458999887765
No 19
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.09 E-value=1.9e-08 Score=112.93 Aligned_cols=264 Identities=16% Similarity=0.152 Sum_probs=154.2
Q ss_pred hchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHh------
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALED------ 182 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~------ 182 (526)
..+..|+++||++|+|++|+| ..|.. .++++.|=+.||=++.=+.-+....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~~--------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPYS--------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCCC--------------HHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 457899999999999999995 23443 35678888999987765543333223210
Q ss_pred -hcCCCC----ChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChh
Q 009780 183 -DYGGFL----SPRIVADFQDYAELCFKEFGD--RVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEP 255 (526)
Q Consensus 183 -~~ggw~----~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~ 255 (526)
....|. +|+..+.+.+-++.+++|+.+ .|..|.+-||+... .++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~------------------- 424 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG------------------- 424 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh-------------------
Confidence 001222 457788899999999999986 58999999996310 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHH
Q 009780 256 YIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLV 335 (526)
Q Consensus 256 ~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l 335 (526)
... .+...++++|+.. +...|..+.+... .+
T Consensus 425 ~~~------~~~~l~~~~k~~D---ptR~vt~~~~~~~-~~--------------------------------------- 455 (604)
T PRK10150 425 ARE------YFAPLAELTRKLD---PTRPVTCVNVMFA-TP--------------------------------------- 455 (604)
T ss_pred HHH------HHHHHHHHHHhhC---CCCceEEEecccC-Cc---------------------------------------
Confidence 011 1223455566654 2333433321100 00
Q ss_pred hhcCCCCChhHHhhhcCCccEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHH
Q 009780 336 RERLPKFANEQSVMLKGSFDFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRD 415 (526)
Q Consensus 336 ~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~ 415 (526)
. ...+...+|++|+|.|...+...... . .+ -..+..
T Consensus 456 -------~---~~~~~~~~Dv~~~N~Y~~wy~~~~~~----------------------------~-----~~-~~~~~~ 491 (604)
T PRK10150 456 -------D---TDTVSDLVDVLCLNRYYGWYVDSGDL----------------------------E-----TA-EKVLEK 491 (604)
T ss_pred -------c---cccccCcccEEEEcccceecCCCCCH----------------------------H-----HH-HHHHHH
Confidence 0 00112346999999986543211000 0 00 012444
Q ss_pred HHHHHHHHcCCCcEEEeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCC-
Q 009780 416 LLIYIKEKYNNPTLYITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGY- 494 (526)
Q Consensus 416 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy- 494 (526)
.+....+.|++ ||+|||.|.+.........++.-..++...|+++|+..+. +-=-|.|-|.|.++|-. +..|.
T Consensus 492 ~~~~~~~~~~k-P~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~~iW~~~D~~-~~~g~~ 565 (604)
T PRK10150 492 ELLAWQEKLHK-PIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGEQVWNFADFA-TSQGIL 565 (604)
T ss_pred HHHHHHHhcCC-CEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEEeeeccC-CCCCCc
Confidence 55556666755 7999999964421100001112235677888888877554 33589999999999932 22221
Q ss_pred ---CCccceEEEeCCCCccccccchHHHHHHHhc
Q 009780 495 ---SVRFGLYFVDYQNGLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 495 ---~~RfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 525 (526)
....||+. ..|+||++++.||++-+
T Consensus 566 ~~~g~~~Gl~~------~dr~~k~~~~~~k~~~~ 593 (604)
T PRK10150 566 RVGGNKKGIFT------RDRQPKSAAFLLKKRWT 593 (604)
T ss_pred ccCCCcceeEc------CCCCChHHHHHHHHHhh
Confidence 13567773 56779999999998754
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.96 E-value=2.4e-08 Score=109.16 Aligned_cols=291 Identities=23% Similarity=0.362 Sum_probs=139.1
Q ss_pred chHHHHHHHH-HcCCCeEEee--c--ccccccc-CCCCCC--CCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhH
Q 009780 110 RYKEDVKIMK-EMNLDAFRFS--I--SWSRLLP-NGKLSG--GVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALE 181 (526)
Q Consensus 110 ~y~eDi~lm~-~lG~~~~R~s--i--~Wsri~P-~~~~~g--~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~ 181 (526)
.+++.++.++ ++|++.+||- + +..-..+ ++ +| .+|+ ...|+++|.|+++||+|+|.|.. +|.++.
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~ 112 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALA 112 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGB
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhc
Confidence 4677777775 9999999985 2 2222322 22 13 2899 88899999999999999999977 777764
Q ss_pred hhc------CCCC-ChHHHHHHHHHHHHHHH----Hhc-Cccc--EEEeccCCccccccCcccCcCCCCCCccccccccc
Q 009780 182 DDY------GGFL-SPRIVADFQDYAELCFK----EFG-DRVK--HWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQ 247 (526)
Q Consensus 182 ~~~------ggw~-~~~~~~~f~~ya~~~~~----~~g-~~V~--~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~ 247 (526)
... .|+. .|+..+.+.++++.+++ ||| +.|. +|.+||||++... |..|.
T Consensus 113 ~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~---------- 175 (486)
T PF01229_consen 113 SGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT---------- 175 (486)
T ss_dssp SS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-----------
T ss_pred CCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC----------
Confidence 321 1222 24556666666655555 555 3466 5689999997421 11110
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhccccccccccccc
Q 009780 248 AGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNY 327 (526)
Q Consensus 248 ~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~y 327 (526)
.+.| ..+ ...+++++|+.. |..+||-.--. .... .... .|
T Consensus 176 -----~~ey---~~l---y~~~~~~iK~~~---p~~~vGGp~~~------~~~~---~~~~---~~-------------- 215 (486)
T PF01229_consen 176 -----PEEY---FEL---YDATARAIKAVD---PELKVGGPAFA------WAYD---EWCE---DF-------------- 215 (486)
T ss_dssp -----HHHH---HHH---HHHHHHHHHHH----TTSEEEEEEEE------TT-T---HHHH---HH--------------
T ss_pred -----HHHH---HHH---HHHHHHHHHHhC---CCCcccCcccc------ccHH---HHHH---HH--------------
Confidence 1112 122 233556667654 68899854100 0000 0111 11
Q ss_pred chHhHHHHhhcCCCCChhHHhhhcCCccEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcc
Q 009780 328 PFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLY 407 (526)
Q Consensus 328 P~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~ 407 (526)
.+++..+ +-++|||.+..|.......... . .. . . ..+ -..
T Consensus 216 ----l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~-----------~-~~---~----~---~~~--~~~ 255 (486)
T PF01229_consen 216 ----LEFCKGN------------NCPLDFISFHSYGTDSAEDINE-----------N-MY---E----R---IED--SRR 255 (486)
T ss_dssp ----HHHHHHC------------T---SEEEEEEE-BESESE-SS-------------EE---E----E---B----HHH
T ss_pred ----HHHHhcC------------CCCCCEEEEEecccccccccch-----------h-HH---h----h---hhh--HHH
Confidence 1111111 1246999999997543211100 0 00 0 0 000 001
Q ss_pred cChHHHHHHHHHHHHH-cCCCcEEEeecCCCCCCCCCCCCccccCCh-hhHHHHHHHHHHHHHHHHcCCCeEEEeecccc
Q 009780 408 VYPRGFRDLLIYIKEK-YNNPTLYITENGYDDFNNATLPLKEALKDP-MRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLL 485 (526)
Q Consensus 408 i~P~GL~~~L~~~~~r-Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~-~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~ 485 (526)
+.| .+..+.+.+.+. +++.|+++||=...... ...++|+ ++..|+... +.. ..|..+-++.+|++.
T Consensus 256 ~~~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~------~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~s 323 (486)
T PF01229_consen 256 LFP-ELKETRPIINDEADPNLPLYITEWNASISP------RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFS 323 (486)
T ss_dssp HHH-HHHHHHHHHHTSSSTT--EEEEEEES-SST------T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SB
T ss_pred HHH-HHHHHHHHHhhccCCCCceeecccccccCC------CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchh
Confidence 222 244443333333 55568999996554432 2344554 555555443 222 356667778899999
Q ss_pred cccccCCC----CCCccceEEEeCCCCccccccchHHHHHH
Q 009780 486 DNFEWYSG----YSVRFGLYFVDYQNGLKRYPKHSAIWFKT 522 (526)
Q Consensus 486 Dn~EW~~G----y~~RfGL~~VD~~~~~~R~~K~S~~~y~~ 522 (526)
|.||=.+- +---|||+..+ .++|+|++.|+-
T Consensus 324 D~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~ 358 (486)
T PF01229_consen 324 DRFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQL 358 (486)
T ss_dssp S---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHH
T ss_pred hhhhccCCCCCceecchhhhhcc------CCCchHHHHHHH
Confidence 99983211 33368999644 689999888764
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=2.6e-07 Score=93.27 Aligned_cols=269 Identities=17% Similarity=0.224 Sum_probs=159.8
Q ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-E-ccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 009780 130 ISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV-T-IFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEF 207 (526)
Q Consensus 130 i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v-t-L~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 207 (526)
+-|.-|+|+. |.+|+++ -|.+.+-+++||+.--- | +.|--.|.||.. -.+..+...+...++...|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4688899987 9999955 58899999999997432 2 357788999963 24777899999999999999999
Q ss_pred cCcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEE
Q 009780 208 GDRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGI 287 (526)
Q Consensus 208 g~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av~~~r~~~~~~~~~~IG~ 287 (526)
.+.|..|=+.|||-- ...++....|.-+.. ..+. + .+|.+.-|+. .|+++.-+
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~-------------gpd~------I----~~aF~~Area---dP~AkL~~ 191 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT-------------GPDY------I----KLAFHIAREA---DPDAKLVI 191 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC-------------ccHH------H----HHHHHHHHhh---CCCceEEe
Confidence 999999999999964 222232222221110 0111 1 1234444553 36777654
Q ss_pred EeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhhcC-CccEEEEecCCcce
Q 009780 288 TLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKG-SFDFIGMNYYSSNY 366 (526)
Q Consensus 288 ~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg-~~DFiGiNYYts~~ 366 (526)
..-. ...+| +.+.. +. -|++.|.+ || ++|=||++-=
T Consensus 192 NDY~-----ie~~~----~kr~~--~~---------------nlI~~Lke-------------kG~pIDgiG~QsH---- 228 (345)
T COG3693 192 NDYS-----IEGNP----AKRNY--VL---------------NLIEELKE-------------KGAPIDGIGIQSH---- 228 (345)
T ss_pred eccc-----ccCCh----HHHHH--HH---------------HHHHHHHH-------------CCCCccceeeeee----
Confidence 3321 11222 11110 10 02222221 35 4799998632
Q ss_pred eecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCC
Q 009780 367 AVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPL 446 (526)
Q Consensus 367 v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~ 446 (526)
.+ .+| ..++-.+..+....+. +. ||+|||--+.... + .
T Consensus 229 ~~----------------------------------~~~--~~~~~~~~a~~~~~k~-Gl-~i~VTELD~~~~~-P---~ 266 (345)
T COG3693 229 FS----------------------------------GDG--PSIEKMRAALLKFSKL-GL-PIYVTELDMSDYT-P---D 266 (345)
T ss_pred ec----------------------------------CCC--CCHHHHHHHHHHHhhc-CC-CceEEEeeeeccC-C---C
Confidence 00 111 1122333444444344 65 6999999888743 1 1
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccCCCCCCccc----eEEEeCCCCccccccchHHHHHH
Q 009780 447 KEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWYSGYSVRFG----LYFVDYQNGLKRYPKHSAIWFKT 522 (526)
Q Consensus 447 ~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfG----L~~VD~~~~~~R~~K~S~~~y~~ 522 (526)
.++..+..+.++.+..+ -.......-+|.+.+.|.++|+++|..|..+|++ |.+ | ..=+||+...+..+
T Consensus 267 ~~~p~~~~~~~~~~~~~--f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~-D----~n~~pKPa~~aI~e 339 (345)
T COG3693 267 SGAPRLYLQKAASRAKA--FLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLF-D----DNYQPKPAYKAIAE 339 (345)
T ss_pred CccHHHHHHHHHHHHHH--HHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCccc-C----CCCCcchHHHHHHH
Confidence 12222333333321111 1222346667999999999999999999888885 222 2 23359999999887
Q ss_pred Hhc
Q 009780 523 FLK 525 (526)
Q Consensus 523 ii~ 525 (526)
+.+
T Consensus 340 ~la 342 (345)
T COG3693 340 VLA 342 (345)
T ss_pred Hhc
Confidence 754
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=5.1e-09 Score=116.30 Aligned_cols=120 Identities=18% Similarity=0.310 Sum_probs=97.9
Q ss_pred hchHHHHHHHHHcCCCeEEeec-cccccccCCCCCCCCChHHHHHHHHH-HHHHHHCCCeEEEEc-cCCCCchhhHhhc-
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSI-SWSRLLPNGKLSGGVNNKGISFYNNL-INELLSNGLQPFVTI-FHWDLPQALEDDY- 184 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si-~Wsri~P~~~~~g~~n~~gl~~y~~~-i~~l~~~gI~p~vtL-~h~~~P~~l~~~~- 184 (526)
..|++||++||++|+|++|.++ +|++++|+. |++|+ .+.|.. |+.+.+.||.+++.. +....|.|+.+++
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf---~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~P 103 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDF---TWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYP 103 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCc---ccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCCh
Confidence 3578999999999999999966 999999998 99999 488888 999999999999999 8899999999874
Q ss_pred --------------CCCC-----ChHHHHHHHHHHHHHHHH-hcC--cccEEEeccCCcc-ccccCcccCcCC
Q 009780 185 --------------GGFL-----SPRIVADFQDYAELCFKE-FGD--RVKHWITLNEPHS-YSSNGYNKGTDA 234 (526)
Q Consensus 185 --------------ggw~-----~~~~~~~f~~ya~~~~~~-~g~--~V~~W~t~NEp~~-~~~~~y~~G~~p 234 (526)
|+|. ++-..+.-.++.+.+.+| |++ .|..|++.||-.. .+++.|+...|+
T Consensus 104 eiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 104 EILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred hheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 3443 444444455555568888 876 6999999999876 566666655555
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=0.00034 Score=70.12 Aligned_cols=309 Identities=16% Similarity=0.219 Sum_probs=169.8
Q ss_pred cccccccCCCCCCceecccccc-cccCCCcCCCCCCCceeeeccccCCCCCCCCCCCCcccchhhchHHH-HHHHHHcCC
Q 009780 46 SSSKFNRSCFPKGFIFGTAAAA-YQYEGAAAEDGRGPSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKED-VKIMKEMNL 123 (526)
Q Consensus 46 ~~~~~~~~~fP~~FlwG~atsa-~QvEG~~~~~g~~~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eD-i~lm~~lG~ 123 (526)
+..-++-...|+||+.|+-.|. .|+|-. .++..+ .++ -++| ++.+|+.|+
T Consensus 26 ~~~v~~v~~~~~dFikGaDis~l~~lE~~------------------Gvkf~d-~ng---------~~qD~~~iLK~~Gv 77 (403)
T COG3867 26 DFFVFPVENSPNDFIKGADISSLIELENS------------------GVKFFD-TNG---------VRQDALQILKNHGV 77 (403)
T ss_pred cceeeeccCChHHhhccccHHHHHHHHHc------------------CceEEc-cCC---------hHHHHHHHHHHcCc
Confidence 4444555678999999987554 566631 112111 111 1444 799999999
Q ss_pred CeEEeec-cccccc---cCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc---CCCCchhhHhhcCCCCCh---HHH
Q 009780 124 DAFRFSI-SWSRLL---PNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF---HWDLPQALEDDYGGFLSP---RIV 193 (526)
Q Consensus 124 ~~~R~si-~Wsri~---P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---h~~~P~~l~~~~ggw~~~---~~~ 193 (526)
|.+|+.| .=++=. +-+ .|.=|. +---++-+++++.||++++..| ||.=|.-- .+.-.|.+- ...
T Consensus 78 NyvRlRvwndP~dsngn~yg--gGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk 151 (403)
T COG3867 78 NYVRLRVWNDPYDSNGNGYG--GGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLK 151 (403)
T ss_pred CeEEEEEecCCccCCCCccC--CCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHH
Confidence 9999976 211111 111 133333 3345677888999999999886 45556432 222456643 333
Q ss_pred HHHHHHHHHHHHHh---cCcccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHH
Q 009780 194 ADFQDYAELCFKEF---GDRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAV 270 (526)
Q Consensus 194 ~~f~~ya~~~~~~~---g~~V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~av 270 (526)
.+.-+|.+.+...+ |-...+-++=||-|- |+ .||-|... -+.-+-.++.+ ++
T Consensus 152 ~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~---------------~f~k~a~L~n~---g~ 206 (403)
T COG3867 152 KAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR---------------NFDKMAALLNA---GI 206 (403)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc---------------ChHHHHHHHHH---Hh
Confidence 34445555555555 556888999999762 22 26654321 12223334433 45
Q ss_pred HHHHHHhhccCCCeEEEEeeCcccccCCCCHHhHHHHHHHHHHhcccccccccccccchHhHHHHhhcCCCCChhHHhhh
Q 009780 271 KVYKEKYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVML 350 (526)
Q Consensus 271 ~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~ed~~~i 350 (526)
+++|+.. +.-+|-+.+. .|.+++. .+|+.|-+.+ -
T Consensus 207 ~avrev~---p~ikv~lHla----~g~~n~~-------------y~~~fd~ltk-------------------------~ 241 (403)
T COG3867 207 RAVREVS---PTIKVALHLA----EGENNSL-------------YRWIFDELTK-------------------------R 241 (403)
T ss_pred hhhhhcC---CCceEEEEec----CCCCCch-------------hhHHHHHHHH-------------------------c
Confidence 5566643 4555544332 2333221 2333332221 1
Q ss_pred cCCccEEEEecCCcceeecCCCCCCCCCCcccCcccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHcCCCcEE
Q 009780 351 KGSFDFIGMNYYSSNYAVDIPVANSINISYSTDSQANLTAERNGKLIGPKAASNWLYVYPRGFRDLLIYIKEKYNNPTLY 430 (526)
Q Consensus 351 kg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~gw~~i~P~GL~~~L~~~~~rY~~ppI~ 430 (526)
.-.+|.||.+||.-- . | .=.-|...|..+..||++. +|
T Consensus 242 nvdfDVig~SyYpyW--h-------------------------g--------------tl~nL~~nl~dia~rY~K~-Vm 279 (403)
T COG3867 242 NVDFDVIGSSYYPYW--H-------------------------G--------------TLNNLTTNLNDIASRYHKD-VM 279 (403)
T ss_pred CCCceEEeeeccccc--c-------------------------C--------------cHHHHHhHHHHHHHHhcCe-EE
Confidence 235699999999421 1 0 0024777899999999985 99
Q ss_pred EeecCCCCCCCC------CCCCcc-----ccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccc-cCCCCCCcc
Q 009780 431 ITENGYDDFNNA------TLPLKE-----ALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFE-WYSGYSVRF 498 (526)
Q Consensus 431 ITENG~~~~~~~------~~~~~~-----~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~E-W~~Gy~~Rf 498 (526)
|.|.+.+.--|+ ..+..+ .+.-.-...++++-++.|... -+.+=.|.|+|-.-=+-. -.+|+..-|
T Consensus 280 V~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~~g~gwat~~ 357 (403)
T COG3867 280 VVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVVLGSGWATSY 357 (403)
T ss_pred EEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceeccCCCccccch
Confidence 999987432111 011111 122244677888888777643 344568999997643333 223444444
Q ss_pred ceEE
Q 009780 499 GLYF 502 (526)
Q Consensus 499 GL~~ 502 (526)
|.-|
T Consensus 358 ~~~y 361 (403)
T COG3867 358 AAKY 361 (403)
T ss_pred hhcc
Confidence 4433
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.13 E-value=2.6e-05 Score=79.94 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=62.6
Q ss_pred hhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcC--
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYG-- 185 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~g-- 185 (526)
...++.|+++||++|+|++|++- .|.. .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~ 93 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNC 93 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCT
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc--------------HHHHHHHhhcCCEEEEeccccccCcccc--CCcc
Confidence 46789999999999999999842 2332 3457778889998887654322111110 01
Q ss_pred --CCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCC
Q 009780 186 --GFLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEP 220 (526)
Q Consensus 186 --gw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp 220 (526)
--.+++..+.+.+-++.+++++.+ -|..|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013678888888888999999976 69999999998
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.85 E-value=6.7e-05 Score=77.79 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=77.6
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc--------CCCCchhhH
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF--------HWDLPQALE 181 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~--------h~~~P~~l~ 181 (526)
.|++-++.||++|+|++-+-+.|.-.||++ |++|++|..=.+.+|+.++++|+.+++-.- .-.+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 588889999999999999999999999998 999999988899999999999999777431 245899998
Q ss_pred hhcCCCC---ChHHHHHHHHHHHHHHHHhcC-------cccEEEeccCCc
Q 009780 182 DDYGGFL---SPRIVADFQDYAELCFKEFGD-------RVKHWITLNEPH 221 (526)
Q Consensus 182 ~~~ggw~---~~~~~~~f~~ya~~~~~~~g~-------~V~~W~t~NEp~ 221 (526)
.+.+... ++.+.++-.+|.+.+++...+ -|..-++=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 7633322 456777777777777777643 377788888854
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=7.2e-05 Score=80.17 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCC-CCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhc---CCC
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLS-GGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDY---GGF 187 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~-g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~---ggw 187 (526)
++|+..||++|+|++|+-+.|-.+.+-.... ...+...+.+.+++|+.+++.||.+++.+|+..-..--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855554432001 223244455899999999999999999999976333222221 112
Q ss_pred C-ChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCcc
Q 009780 188 L-SPRIVADFQDYAELCFKEFGD--RVKHWITLNEPHS 222 (526)
Q Consensus 188 ~-~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~ 222 (526)
. ....++++.+--+.++.||++ .|....+.|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 356778999999999999987 4777899999985
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.46 E-value=0.0013 Score=75.16 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=91.4
Q ss_pred hchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--------cCCCCchhh
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--------FHWDLPQAL 180 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~h~~~P~~l 180 (526)
..|++=|+.||.+|+|++-.=+.|.-.||++ |++|++|..=..++|+.+.+.|+-+|+-. -.-.+|.||
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 3588889999999999999999999999998 99999999999999999999999877754 356789999
Q ss_pred HhhcCCC----CChHHHHHHHHHHHHHHHHhc---------CcccEEEeccCCcc
Q 009780 181 EDDYGGF----LSPRIVADFQDYAELCFKEFG---------DRVKHWITLNEPHS 222 (526)
Q Consensus 181 ~~~~ggw----~~~~~~~~f~~ya~~~~~~~g---------~~V~~W~t~NEp~~ 222 (526)
... .|. .++.+.++-.+|.+.+++... .-|...++=||-..
T Consensus 136 ~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 136 KYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred hcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 854 342 267778888888888888773 34888899999643
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.27 E-value=0.0024 Score=67.07 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=58.6
Q ss_pred HHcCCCeEEeec---cc------------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhh
Q 009780 119 KEMNLDAFRFSI---SW------------SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDD 183 (526)
Q Consensus 119 ~~lG~~~~R~si---~W------------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~ 183 (526)
+.+|++.+|+.| ++ .|.+--...+|.+|+.+=+-=+.++++++++|+..++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 358999999988 33 3332111124788886555556789999999999655 7788899998764
Q ss_pred c---CC-----CCChHHHHHHHHHHHHHHHHhcC---cccEEEeccCCc
Q 009780 184 Y---GG-----FLSPRIVADFQDYAELCFKEFGD---RVKHWITLNEPH 221 (526)
Q Consensus 184 ~---gg-----w~~~~~~~~f~~ya~~~~~~~g~---~V~~W~t~NEp~ 221 (526)
. |+ =+.++..+.|++|-..|+++|.. .+.+-.++|||+
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQ 184 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TT
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCC
Confidence 1 11 25678899999999999999933 699999999998
No 29
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.86 E-value=0.0015 Score=68.83 Aligned_cols=106 Identities=21% Similarity=0.354 Sum_probs=80.2
Q ss_pred hhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc-cC-----------CC
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI-FH-----------WD 175 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL-~h-----------~~ 175 (526)
+...+.+++.||++||..+-+.+=|..+|+++ .+++|| +.|+++++.+++.|++..+.| +| ..
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~--p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG--PQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS--TTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC--CCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 34789999999999999999999999999997 499999 779999999999999987766 23 46
Q ss_pred CchhhHhh-----------cCC--------CCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009780 176 LPQALEDD-----------YGG--------FLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPH 221 (526)
Q Consensus 176 ~P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 221 (526)
||.|+.+. .|. |+...+++.|.+|-+...++|.+.. -|+-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 89998753 122 4454559999999999999998765 5555544
No 30
>PLN02161 beta-amylase
Probab=96.77 E-value=0.006 Score=65.65 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=86.5
Q ss_pred cchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-CC---------
Q 009780 105 VDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-HW--------- 174 (526)
Q Consensus 105 ~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h~--------- 174 (526)
..+....+..++.+|.+||..+-+.+=|.-+|+++ .+++|| ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS--PLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 56777789999999999999999999999999987 499999 7799999999999999777764 42
Q ss_pred --CCchhhHhh--------c---CC----------------CCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 175 --DLPQALEDD--------Y---GG----------------FLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 175 --~~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
.||.|+.+. | -| +..+.-++.|.+|-+...++|.+... -|+.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 599998753 0 12 11223457788888888888877654 36666544
No 31
>PLN02803 beta-amylase
Probab=96.72 E-value=0.0064 Score=65.78 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=83.4
Q ss_pred hhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-C-----------CC
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-H-----------WD 175 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h-----------~~ 175 (526)
-...+..++.+|++||..+-+.+=|.-+|+++ .+++|| ..|+++++.+++.|++..+.|. | -.
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDG--PMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 34578899999999999999999999999987 499999 6799999999999999777663 4 36
Q ss_pred CchhhHhh--------c---CCC----------------CChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 176 LPQALEDD--------Y---GGF----------------LSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 176 ~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
||.|+.+. | -|- ..+.-++.|.+|-+...++|.+... -|+.|..+
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 99998763 0 121 1233457788888888888877654 46667554
No 32
>PLN00197 beta-amylase; Provisional
Probab=96.65 E-value=0.0079 Score=65.31 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=83.8
Q ss_pred hhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-C-----------CC
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-H-----------WD 175 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h-----------~~ 175 (526)
-...+..++.+|.+||..+-+.+=|.-+|+++ .+++|| ..|+++++.+++.|++..+.|. | -.
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~--p~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERES--PGVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 34578899999999999999999999999987 499999 6699999999999999777763 4 36
Q ss_pred CchhhHhh--------c---CCC----------------CChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 176 LPQALEDD--------Y---GGF----------------LSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 176 ~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
||.|+.+. | .|- ..+.-++.|.+|-+..-++|.+.+. -|+.|..+
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 99998763 0 121 1223367888888888888877655 36666554
No 33
>PLN02801 beta-amylase
Probab=96.55 E-value=0.013 Score=63.12 Aligned_cols=99 Identities=22% Similarity=0.324 Sum_probs=78.4
Q ss_pred hhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-C-----------CC
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-H-----------WD 175 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h-----------~~ 175 (526)
-...+..++.+|++|+..+-+.+=|.-+|.++ .+++|| ..|+++++.++++|++..+.|. | ..
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKG--PKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 34478899999999999999999999999987 499999 6799999999999999776653 3 36
Q ss_pred CchhhHhh------------cCC---------------CCChHHHHHHHHHHHHHHHHhcCcc
Q 009780 176 LPQALEDD------------YGG---------------FLSPRIVADFQDYAELCFKEFGDRV 211 (526)
Q Consensus 176 ~P~~l~~~------------~gg---------------w~~~~~~~~f~~ya~~~~~~~g~~V 211 (526)
||.|+.+. .|. +..+.-++.|.+|-+...++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99998863 111 1123346888888888888887754
No 34
>PLN02905 beta-amylase
Probab=96.23 E-value=0.027 Score=62.02 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=79.4
Q ss_pred cchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-C----------
Q 009780 105 VDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-H---------- 173 (526)
Q Consensus 105 ~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h---------- 173 (526)
..+....+..++.+|.+|+..+-+.+=|.-+|+++ .+++|| ..|+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g--P~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA--PQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 35666788999999999999999999999999987 499999 7799999999999999777663 4
Q ss_pred -CCCchhhHhh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhcCc
Q 009780 174 -WDLPQALEDD--------Y---GGFL----------------SPRIVADFQDYAELCFKEFGDR 210 (526)
Q Consensus 174 -~~~P~~l~~~--------~---ggw~----------------~~~~~~~f~~ya~~~~~~~g~~ 210 (526)
-.||.|+.+. | -|.. .+.-++.|.+|-+...++|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3699998763 0 1211 2334577777777777777664
No 35
>PLN02705 beta-amylase
Probab=96.17 E-value=0.028 Score=61.73 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=77.6
Q ss_pred hhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-C-----------C
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-H-----------W 174 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h-----------~ 174 (526)
+-...+..++.+|.+||..+-+.+=|..+|.++ .+++|| ..|+++++.+++.|++..+.|. | -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~--P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN--PQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 345578899999999999999999999999987 499999 7799999999999999777663 4 3
Q ss_pred CCchhhHhh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhcCc
Q 009780 175 DLPQALEDD--------Y---GGFL----------------SPRIVADFQDYAELCFKEFGDR 210 (526)
Q Consensus 175 ~~P~~l~~~--------~---ggw~----------------~~~~~~~f~~ya~~~~~~~g~~ 210 (526)
.||.|+.+. | -|.. .+.-++.|.+|.+..-++|.+.
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 699998863 0 1211 2234577888887777777664
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.11 E-value=0.04 Score=56.46 Aligned_cols=105 Identities=12% Similarity=0.204 Sum_probs=62.6
Q ss_pred hHHHHHHHHHcCCCeEEeec--ccccc-c----cCCCC---C------CCCChHHHHHHHHHHHHHHHCCCeEEEEccCC
Q 009780 111 YKEDVKIMKEMNLDAFRFSI--SWSRL-L----PNGKL---S------GGVNNKGISFYNNLINELLSNGLQPFVTIFHW 174 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si--~Wsri-~----P~~~~---~------g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~ 174 (526)
++.=++..++-|+|.+|+.+ .|... . |...+ + ..+|.+=.++.+++|+.|.++||.|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447889999999999999 55443 1 11100 0 1378888999999999999999999876555
Q ss_pred CCchhhHhhcCCCCC---hHHHHHHHHHHHHHHHHhcCcc-cEEEeccCC
Q 009780 175 DLPQALEDDYGGFLS---PRIVADFQDYAELCFKEFGDRV-KHWITLNEP 220 (526)
Q Consensus 175 ~~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~g~~V-~~W~t~NEp 220 (526)
..|. .+ +.|-. .-..+.-.+|.+.|++||+..- ..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 1121 11 33432 2335667888889999999973 779998885
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.10 E-value=0.046 Score=51.39 Aligned_cols=105 Identities=15% Similarity=0.370 Sum_probs=71.8
Q ss_pred hchHHHHHHHHHcCCCeEEeecccccc-----ccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhh
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRL-----LPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDD 183 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri-----~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~ 183 (526)
.+|+++++.|+++|++.+=+- |+.. .|..-..+.+.....+..+.+++++.+.||+++++|+. -|.|..+.
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~~ 95 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQG 95 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhcc
Confidence 379999999999999988543 4433 23320012244455688999999999999999999986 44555421
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCc
Q 009780 184 YGGFLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPH 221 (526)
Q Consensus 184 ~ggw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~ 221 (526)
-..| -++.=..-++.+.++||. .+..|-+-.|+.
T Consensus 96 ~~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 96 DLDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred CHHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 0112 233335578888889986 578888888865
No 38
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.08 E-value=0.032 Score=55.47 Aligned_cols=67 Identities=18% Similarity=0.337 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccc
Q 009780 411 RGFRDLLIYIKEKYNNPTLYITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFE 489 (526)
Q Consensus 411 ~GL~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~E 489 (526)
.++...|..++++|++ ||.|||-|+..... .-.++...+|+++-+..+. .---|.+|++.++++..+
T Consensus 151 ~~~~~~i~~~~~~~~k-PIWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~ld----~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGK-PIWITEFGCWNGGS-------QGSDEQQASFLRQALPWLD----SQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhCC-CEEEEeecccCCCC-------CCCHHHHHHHHHHHHHHHh----cCCCeeEEEecccccccC
Confidence 3688889999999996 69999999865211 1245667777766666654 446899999999554433
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.039 Score=61.18 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=90.2
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--------cCCCCchhhH
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--------FHWDLPQALE 181 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~h~~~P~~l~ 181 (526)
.|++=|+.||++|+|+...=+.|.-.||.+ |++|++|.-=..++|..+.++|+=+++-+ .+-.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 578889999999999999999999999999 99999998878899999999998765543 4778898887
Q ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc-------CcccEEEeccCCc
Q 009780 182 DDYGGF----LSPRIVADFQDYAELCFKEFG-------DRVKHWITLNEPH 221 (526)
Q Consensus 182 ~~~ggw----~~~~~~~~f~~ya~~~~~~~g-------~~V~~W~t~NEp~ 221 (526)
.. .|- .|+.+..++.+|.+.++.... .=|..-++=||-.
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 76 442 278888899999999988543 3478888999976
No 40
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.68 E-value=0.47 Score=48.73 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=50.5
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCC
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLS 189 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 189 (526)
..+.||.+||+||+|+.|+= -|-|.. | .+..++.|.+.||=+++.|... ..-+... ..|.+
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~------n------Hd~CM~~~~~aGIYvi~Dl~~p--~~sI~r~-~P~~s 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK------N------HDECMSAFADAGIYVILDLNTP--NGSINRS-DPAPS 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-BT--TBS--TT-S----
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC------C------HHHHHHHHHhCCCEEEEecCCC--CccccCC-CCcCC
Confidence 56999999999999999983 344443 2 4888999999999999998542 1122111 11110
Q ss_pred hHHHHHHHHHHHHHHHHhc--CcccEEEeccCC
Q 009780 190 PRIVADFQDYAELCFKEFG--DRVKHWITLNEP 220 (526)
Q Consensus 190 ~~~~~~f~~ya~~~~~~~g--~~V~~W~t~NEp 220 (526)
=....|.+| ..+++.|. +.|-....=||-
T Consensus 115 -w~~~l~~~~-~~vid~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 115 -WNTDLLDRY-FAVIDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ---HHHHHHH-HHHHHHHTT-TTEEEEEEEESS
T ss_pred -CCHHHHHHH-HHHHHHhccCCceEEEEeccee
Confidence 012333343 34455555 356666666774
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.07 E-value=0.22 Score=59.57 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=64.7
Q ss_pred hhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc---CCCCchhhHhh
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF---HWDLPQALEDD 183 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---h~~~P~~l~~~ 183 (526)
....+++||++||++|+|++|+| ..|.. .++.+.|=+.||=++--.. |.-.|.. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~--------------p~fydlcDe~GilV~dE~~~e~hg~~~~~---~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH--------------PLWYELCDRYGLYVVDEANIETHGMVPMN---R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHcCCEEEEecCccccCCcccc---C
Confidence 45678999999999999999995 34443 2345778889997765432 2111110 0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCc
Q 009780 184 YGGFLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPH 221 (526)
Q Consensus 184 ~ggw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~ 221 (526)
...+++..+.+.+=++.+++|..+ -|..|..-||+.
T Consensus 427 --~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 --LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred --CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 112467777788888999999986 599999999974
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.05 E-value=0.41 Score=57.37 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=63.7
Q ss_pred hhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc---C-CCCchhhHhh
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF---H-WDLPQALEDD 183 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---h-~~~P~~l~~~ 183 (526)
...+++||++||++|+|++|+| ..|.. ..+.+.|=+.||=++--.. | |.....+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~--------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~--- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND--------------PRFYELCDIYGLFVMAETDVESHGFANVGDI--- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHCCCEEEECCcccccCccccccc---
Confidence 5678999999999999999996 35554 3457788899997666331 2 1111000
Q ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcC--cccEEEeccCC
Q 009780 184 YGGF--LSPRIVADFQDYAELCFKEFGD--RVKHWITLNEP 220 (526)
Q Consensus 184 ~ggw--~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp 220 (526)
.+ .+|...+.|.+=++.+++|..+ -|..|.+-||.
T Consensus 412 --~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 --SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred --ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 11 2455667777888999999986 59999999997
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.96 E-value=0.42 Score=55.50 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=67.5
Q ss_pred cchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhc
Q 009780 105 VDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDY 184 (526)
Q Consensus 105 ~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ 184 (526)
+-.+..+++|+++||++|+|++|.| -.|+. ..+.+.|-+.||=++=-..+ +- +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecch-----hh---c
Confidence 4445669999999999999999998 66665 44566777889976654322 11 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCc
Q 009780 185 GGFLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPH 221 (526)
Q Consensus 185 ggw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~ 221 (526)
|...+++..+...+=++.+++|-.+ .|..|..=||.+
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 3345667777778888899999875 699999999965
No 44
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=92.38 E-value=0.65 Score=46.00 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEccC--------------CCCchhhHhh----------------cCC----CCChH-----
Q 009780 151 SFYNNLINELLSNGLQPFVTIFH--------------WDLPQALEDD----------------YGG----FLSPR----- 191 (526)
Q Consensus 151 ~~y~~~i~~l~~~gI~p~vtL~h--------------~~~P~~l~~~----------------~gg----w~~~~----- 191 (526)
+.++.+|+.-+++|..+|+||.= ...|.|=..+ .++ -.+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 78899999999999999999841 1222221111 011 12343
Q ss_pred -HHHHHHHHHHHHHHHhcCc-----ccEEEeccCCccccccCcccCcCCCCCCcccccccccCCCCCChhHHHHHHHHHH
Q 009780 192 -IVADFQDYAELCFKEFGDR-----VKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLS 265 (526)
Q Consensus 192 -~~~~f~~ya~~~~~~~g~~-----V~~W~t~NEp~~~~~~~y~~G~~pPg~~~~~~~~~~~~~~~~~~~~~~~h~~llA 265 (526)
+.+.| +..+..+||.. |++|..-|||.+-..-= .-.+|-. ..+.-+....++
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH--~dVHP~~-----------------~t~~El~~r~i~ 161 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTH--RDVHPEP-----------------VTYDELRDRSIE 161 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHT--TTT--S--------------------HHHHHHHHHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccc--cccCCCC-----------------CCHHHHHHHHHH
Confidence 45444 66777888765 99999999998653100 0122221 223445566677
Q ss_pred HHHHHHHHHHHhhccCCCeE-EEEeeCc
Q 009780 266 HAAAVKVYKEKYQAIQKGKI-GITLISD 292 (526)
Q Consensus 266 Ha~av~~~r~~~~~~~~~~I-G~~~~~~ 292 (526)
.|+|+|. .. |+++| |.+.-..
T Consensus 162 ~AkaiK~---~D---P~a~v~GP~~wgw 183 (239)
T PF12891_consen 162 YAKAIKA---AD---PDAKVFGPVEWGW 183 (239)
T ss_dssp HHHHHHH---H----TTSEEEEEEE-SH
T ss_pred HHHHHHh---hC---CCCeEeechhhcc
Confidence 7777654 33 67775 6664443
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.86 E-value=0.12 Score=55.29 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=81.4
Q ss_pred chHHHHHHHHHcCCCeEEeeccc-cccccCCCCCCCCChHH-HHHHHHHHHHHHHCCCeEEEEcc----CCCCchhhHhh
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISW-SRLLPNGKLSGGVNNKG-ISFYNNLINELLSNGLQPFVTIF----HWDLPQALEDD 183 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~W-sri~P~~~~~g~~n~~g-l~~y~~~i~~l~~~gI~p~vtL~----h~~~P~~l~~~ 183 (526)
..+.|++.|+.+|++..|++|-= ...--+. |..|.+. +.+.+.+++.+...+|+.++||. |+.--.|...=
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~---G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipw 103 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRDKE---GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPW 103 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhhhh---ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeec
Confidence 34678999999999999999622 2222222 7777766 88999999999999999999975 43222221110
Q ss_pred cC------CCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCcc
Q 009780 184 YG------GFLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPHS 222 (526)
Q Consensus 184 ~g------gw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~ 222 (526)
.| -...++++.-|.+|++.+++.|+. .+..|..-|||-+
T Consensus 104 ag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 104 AGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 12 245678889999999999998875 5789999999766
No 46
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=87.53 E-value=5.1 Score=41.06 Aligned_cols=88 Identities=17% Similarity=0.396 Sum_probs=61.4
Q ss_pred hhchHHHHHHHHHcCCCeEEeec--cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcC
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSI--SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYG 185 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~g 185 (526)
..||.+-.+++++.|||++-+.= .=+++.-. +-++-+.++-+.++.+||++.+++ .|.-|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~---------~~l~~v~~lAdvfRpYGIkv~LSv-nFasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP---------EYLDKVARLADVFRPYGIKVYLSV-NFASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST---------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH---------HHHHHHHHHHHHHhhcCCEEEEEe-eccCCccc----C
Confidence 45888899999999999987643 11122222 234667899999999999999998 46667654 4
Q ss_pred C-----CCChHHHHHHHHHHHHHHHHhcC
Q 009780 186 G-----FLSPRIVADFQDYAELCFKEFGD 209 (526)
Q Consensus 186 g-----w~~~~~~~~f~~ya~~~~~~~g~ 209 (526)
| -++++++.++.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 57899999999999999999866
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=87.38 E-value=4.5 Score=36.55 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCeEEeecc--cccc-ccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccC-C------CCchhhHh
Q 009780 113 EDVKIMKEMNLDAFRFSIS--WSRL-LPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFH-W------DLPQALED 182 (526)
Q Consensus 113 eDi~lm~~lG~~~~R~si~--Wsri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h-~------~~P~~l~~ 182 (526)
+=++.|+++|+|+.-+... +.-. .|...-.-....+ -+.+.++|++|+++||++++-+.. + ..|.|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 3468899999999999432 2111 2332100122233 388999999999999999885532 2 34777663
Q ss_pred hcC------------CCC----ChHHHHHHHHHHHHHHHHh
Q 009780 183 DYG------------GFL----SPRIVADFQDYAELCFKEF 207 (526)
Q Consensus 183 ~~g------------gw~----~~~~~~~f~~ya~~~~~~~ 207 (526)
.-. ||. |..+.+...+-++.++++|
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 211 232 4567777778888888888
No 48
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=86.14 E-value=1.1 Score=47.35 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=71.8
Q ss_pred HHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhc-CCCCCh-HHHHH
Q 009780 118 MKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDY-GGFLSP-RIVAD 195 (526)
Q Consensus 118 m~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~-ggw~~~-~~~~~ 195 (526)
-+|+|++-.|.---|.-++.+ -.+++ .++++++|.+...|+.=+.+-.||..+.-....+ +.-..+ ...+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~----~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK----LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeecc----ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 358899998888888833333 34788 8999999999999944344556777776554433 222233 48899
Q ss_pred HHHHHHHHHHHhcC---cccEEEeccCCccc
Q 009780 196 FQDYAELCFKEFGD---RVKHWITLNEPHSY 223 (526)
Q Consensus 196 f~~ya~~~~~~~g~---~V~~W~t~NEp~~~ 223 (526)
++++++.|+.+||- +.-....+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 99999999999995 34556789999966
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=79.33 E-value=8.5 Score=39.85 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=64.1
Q ss_pred hchHHHHHHHHHcCCCeEEeeccc-------cccccCCC-CCCC--CChHHHHHHHHHHHHHHHCCCeEEEEc----cC-
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISW-------SRLLPNGK-LSGG--VNNKGISFYNNLINELLSNGLQPFVTI----FH- 173 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~W-------sri~P~~~-~~g~--~n~~gl~~y~~~i~~l~~~gI~p~vtL----~h- 173 (526)
...++=++.|+++|+|++=+.+.+ |.++|... .+|. .+ .|.+.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCC-CCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 446778999999999987665533 23333210 0011 11 245779999999999999976443 11
Q ss_pred ------CCCchhhHhhc-----------CC--CCC---hHHHHHHHHHHHHHHHHhc
Q 009780 174 ------WDLPQALEDDY-----------GG--FLS---PRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 174 ------~~~P~~l~~~~-----------gg--w~~---~~~~~~f~~ya~~~~~~~g 208 (526)
-..|.|+.... ++ |+| |++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 12466654221 11 454 5899999999999999995
No 50
>smart00642 Aamy Alpha-amylase domain.
Probab=76.88 E-value=8.4 Score=36.07 Aligned_cols=63 Identities=10% Similarity=0.194 Sum_probs=43.8
Q ss_pred hhhchHHHHHHHHHcCCCeEEeecccccccc---------CCCCCCCCC--hHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWSRLLP---------NGKLSGGVN--NKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P---------~~~~~g~~n--~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.+....+-+.-+++||++++-++--+..... ... -.+| .-..+-++++|++|+++||++++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~--~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY--KQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc--CCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3555677788999999999988765544431 110 0111 1234668999999999999999975
No 51
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=72.91 E-value=5.1 Score=41.51 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH--cCCCcEEEeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCe-----EEEeecccc
Q 009780 413 FRDLLIYIKEK--YNNPTLYITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNV-----KGYFAWSLL 485 (526)
Q Consensus 413 L~~~L~~~~~r--Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v-----~GY~~WSl~ 485 (526)
+.+.+...-++ +++.||+|||.|++..+... ..+. .- +.+.+.+.+.+.+|.+- .-+++-+++
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~----a~~~--nA----~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~F 281 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPG----ATPE--NA----QAYNQNLIKHVLKGTPLRPGNGIDVYIFEAF 281 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSSTT----CSHH--HH----HHHHHHHHHHCCGBBSSSBSS---EEES-SB
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCCC----CCcc--hh----HHHHHHHHHHHhCCCcccCCCCCeEEEEEEe
Confidence 34444555444 55678999999999875310 0111 12 34445555555566654 347778888
Q ss_pred cccccCCC--CCCccceEEEeCC
Q 009780 486 DNFEWYSG--YSVRFGLYFVDYQ 506 (526)
Q Consensus 486 Dn~EW~~G--y~~RfGL~~VD~~ 506 (526)
|- .|..| .++.|||++-|.+
T Consensus 282 dE-~~K~~~~~E~~wGlf~~d~~ 303 (310)
T PF00332_consen 282 DE-NWKPGPEVERHWGLFYPDGT 303 (310)
T ss_dssp ---TTSSSSGGGGG--SB-TTSS
T ss_pred cC-cCCCCCcccceeeeECCCCC
Confidence 76 56655 5789999987654
No 52
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=64.44 E-value=43 Score=34.09 Aligned_cols=118 Identities=12% Similarity=0.162 Sum_probs=71.7
Q ss_pred CceeeeccccCCCCCCCCCCCCcccchhhchHHHHHHHHHcCCCeEEeeccccccccCCC--CCCCCChHHHHHHHHHHH
Q 009780 81 PSIWDTFTHKYPDRIKNHDDGDIAVDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGK--LSGGVNNKGISFYNNLIN 158 (526)
Q Consensus 81 ~s~WD~~~~~~~~~~~~~~~~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~--~~g~~n~~gl~~y~~~i~ 158 (526)
.+.|+-|... .+. ..+-.+.--+..+++=|+..+++|+..+=+.--|+.-.+... +...... ....++++
T Consensus 9 k~~W~Ww~~~-~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~ 80 (273)
T PF10566_consen 9 KAAWSWWSMH-NGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVD 80 (273)
T ss_dssp EEEECTCCCC-TTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHH
T ss_pred eEEEeecccC-CCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHH
Confidence 4667755542 121 112233345778899999999999999999999997332211 0111222 44689999
Q ss_pred HHHHCCCeEEEEccCCC------CchhhHhh------cC---------CCCChHHHHHHHHHHHHHHHH
Q 009780 159 ELLSNGLQPFVTIFHWD------LPQALEDD------YG---------GFLSPRIVADFQDYAELCFKE 206 (526)
Q Consensus 159 ~l~~~gI~p~vtL~h~~------~P~~l~~~------~g---------gw~~~~~~~~f~~ya~~~~~~ 206 (526)
-.+++|+.+++-.+|-+ +=.-+.+. .| +-.+...++.+.+.++.++++
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999888866 21112111 12 234567888888888888775
No 53
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.08 E-value=21 Score=38.88 Aligned_cols=113 Identities=18% Similarity=0.326 Sum_probs=73.1
Q ss_pred hhchHHHHHHHHHcCCCeEEee----ccccccccCCCC--------------------------CCCCChH----HHHHH
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFS----ISWSRLLPNGKL--------------------------SGGVNNK----GISFY 153 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~s----i~Wsri~P~~~~--------------------------~g~~n~~----gl~~y 153 (526)
|.+|+..|+-|+=.|+|..=.- +-|-+|+-.-.+ .|....+ -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 5789999999999999965443 245555443200 0222220 11122
Q ss_pred HHHHHHHHHCCCeEEEEccCCCCchhhHhhc--------CCCC---------------ChHHHHHHHHHHHHHHHHhcC-
Q 009780 154 NNLINELLSNGLQPFVTIFHWDLPQALEDDY--------GGFL---------------SPRIVADFQDYAELCFKEFGD- 209 (526)
Q Consensus 154 ~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~--------ggw~---------------~~~~~~~f~~ya~~~~~~~g~- 209 (526)
.++|+.+++-||+|++..+.--.|..|..-+ +.|. .|-+.+-=..|.+...+.||.
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 4899999999999999998888898887543 2233 334455556677788889995
Q ss_pred -cccEEEeccCC
Q 009780 210 -RVKHWITLNEP 220 (526)
Q Consensus 210 -~V~~W~t~NEp 220 (526)
.+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 33334478874
No 54
>PLN02361 alpha-amylase
Probab=62.82 E-value=19 Score=38.73 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=47.0
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCCC---CCCC--hHHHHHHHHHHHHHHHCCCeEEEEc--cC
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLS---GGVN--NKGISFYNNLINELLSNGLQPFVTI--FH 173 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~---g~~n--~~gl~~y~~~i~~l~~~gI~p~vtL--~h 173 (526)
.+|....+-+.-+++||++++=++=...-..+.|--. -.+| +-..+-++++|++|+++||++|+.+ .|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4889999999999999999998776443333322000 0011 1123558999999999999999974 56
No 55
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=62.35 E-value=35 Score=38.20 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=56.8
Q ss_pred hhhchHHHHHHHHHcCCCeEEeec--------ccc-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSI--------SWS-------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si--------~Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
-+.-..+-+.-+++||++++-+.= .|. .+.|.- | ..+-+++||++|+++||++|+.+
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~---G-----~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY---G-----GPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 345556778999999999987643 121 122221 3 24558999999999999999974
Q ss_pred --cCCCC---------chhhHhh-cCCC------CCh---HHHHHHHHHHHHHHHHhc
Q 009780 172 --FHWDL---------PQALEDD-YGGF------LSP---RIVADFQDYAELCFKEFG 208 (526)
Q Consensus 172 --~h~~~---------P~~l~~~-~ggw------~~~---~~~~~f~~ya~~~~~~~g 208 (526)
.|... | |+... ..+| .++ .+++.+.+-++.-++.||
T Consensus 181 V~NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 181 VYNHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred ccCCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 45431 2 33221 1233 234 666666666666666553
No 56
>PRK12313 glycogen branching enzyme; Provisional
Probab=61.37 E-value=33 Score=39.15 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=60.4
Q ss_pred hhchHHH-HHHHHHcCCCeEEeec--------ccc-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 108 YHRYKED-VKIMKEMNLDAFRFSI--------SWS-------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 108 yh~y~eD-i~lm~~lG~~~~R~si--------~Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
|.-..+. |.-+++||++++=+.= +|. .|.|.- |. .+=++++|++|+++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 4445667 4899999999987543 221 122222 32 3458999999999999999984
Q ss_pred --cCCCCch----hhH--------h---h-cCC-------CCChHHHHHHHHHHHHHHHHhc
Q 009780 172 --FHWDLPQ----ALE--------D---D-YGG-------FLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 172 --~h~~~P~----~l~--------~---~-~gg-------w~~~~~~~~f~~ya~~~~~~~g 208 (526)
.|..... ++. + . +.+ +.|+++++.+.+-++.-+++||
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4643211 110 0 0 012 3378888988988888888885
No 57
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=60.33 E-value=55 Score=33.34 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP 177 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 177 (526)
+.|++++++.|++.+++.++=|...-.... +.--.+.++-..++++.++++|+++.+++-+|+.|
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 569999999999999999965555443211 33346788889999999999999999999987744
No 58
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=60.17 E-value=8.2 Score=38.51 Aligned_cols=57 Identities=16% Similarity=0.376 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCC---------CCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSG---------GVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g---------~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.+-|+-+|+||++++-++=-+. .|... .| ....-..+=+++||++|+++||++|+.+
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 5568899999999998876444 11110 01 0112245668999999999999999986
No 59
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=59.77 E-value=5.2 Score=33.17 Aligned_cols=19 Identities=37% Similarity=0.699 Sum_probs=14.1
Q ss_pred HHHHhcC--cccEEEeccC-Cc
Q 009780 203 CFKEFGD--RVKHWITLNE-PH 221 (526)
Q Consensus 203 ~~~~~g~--~V~~W~t~NE-p~ 221 (526)
++.+||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677775 8999999999 66
No 60
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=58.72 E-value=30 Score=35.02 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=48.5
Q ss_pred HHHHHHHcCC-CcEEEeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccC----
Q 009780 417 LIYIKEKYNN-PTLYITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWY---- 491 (526)
Q Consensus 417 L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~---- 491 (526)
|++++.-.+. .+++|||.|++..+...-...-.+. ....|+++-+..|+ ..|+++. .-+.+|- -|.
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~a--nq~~~~~~i~~~~~---~~G~d~f---vfeAFdd-~WK~~~~ 291 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVA--NQKIAVQEILNALR---SCGYDVF---VFEAFDD-DWKADGS 291 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChh--HHHHHHHHHHhhhh---ccCccEE---Eeeeccc-cccCccc
Confidence 8888887765 6899999999987643222222222 35666665555443 4898864 4444443 243
Q ss_pred CCCCCccceEEEe
Q 009780 492 SGYSVRFGLYFVD 504 (526)
Q Consensus 492 ~Gy~~RfGL~~VD 504 (526)
.|-++-||.++-|
T Consensus 292 y~VEkywGv~~s~ 304 (305)
T COG5309 292 YGVEKYWGVLSSD 304 (305)
T ss_pred cchhhceeeeccC
Confidence 2566778887654
No 61
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.38 E-value=33 Score=34.34 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.+|+++..+.|++.+|+.++.|.+.-...+ +.=..++++-..++++.++++|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 789999999999999999988876433211 22335678889999999999999887655
No 62
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.06 E-value=29 Score=34.33 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP 177 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 177 (526)
+++++++++.|++.+|++++-+.+.-.... +.=....++...+.++.++++|+++.+.+.+..-|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNL-NKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 899999999999999999977632111100 11122345778899999999999999998665544
No 63
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=57.06 E-value=49 Score=34.00 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHHcCCCeEEeecc--ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHH
Q 009780 116 KIMKEMNLDAFRFSIS--WSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIV 193 (526)
Q Consensus 116 ~lm~~lG~~~~R~si~--Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~ 193 (526)
+.+++.|++.+-++.. -..-.|.- .|............-|..|+++|++++|.+=.+.-.... .+...+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~ 89 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSA 89 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccH
Confidence 5678899998887753 22222221 011110012455778999999999999988433321100 034678
Q ss_pred HHHHHHHHHHHHHhc-Cccc
Q 009780 194 ADFQDYAELCFKEFG-DRVK 212 (526)
Q Consensus 194 ~~f~~ya~~~~~~~g-~~V~ 212 (526)
+.|++....+.++|+ +.|+
T Consensus 90 ~~~~~a~~~~i~~y~~dgiD 109 (294)
T cd06543 90 DQLAAAYQKVIDAYGLTHLD 109 (294)
T ss_pred HHHHHHHHHHHHHhCCCeEE
Confidence 888888888888987 3444
No 64
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.91 E-value=29 Score=36.76 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=48.0
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccC
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFH 173 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h 173 (526)
.++|++.+.+.|++.+|+.++-|.+.-+..+ +.-..+.++-..+.++.++++|+++.+++-.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 4899999999999999999977766543211 2223456788899999999999998887643
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=56.81 E-value=59 Score=37.77 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=59.4
Q ss_pred hhchHHHH-HHHHHcCCCeEEeecc--------cc-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 108 YHRYKEDV-KIMKEMNLDAFRFSIS--------WS-------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 108 yh~y~eDi-~lm~~lG~~~~R~si~--------Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
|.-..+.+ .-+++||++++=+.=- |. .|.|.- |. .+-++++|++|+++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 33444553 7789999999866542 21 122222 32 3558999999999999999984
Q ss_pred --cCCCCc-----------hhhHh-----hcC-------CCCChHHHHHHHHHHHHHHHHhc
Q 009780 172 --FHWDLP-----------QALED-----DYG-------GFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 172 --~h~~~P-----------~~l~~-----~~g-------gw~~~~~~~~f~~ya~~~~~~~g 208 (526)
.|.... .+... .+. .+.++++++.+.+-++.-+++|+
T Consensus 336 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 336 VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 465321 11110 011 23478888888988888888875
No 66
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=56.81 E-value=55 Score=38.12 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=59.8
Q ss_pred hhhch-HHHHHHHHHcCCCeEEeecccc---------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 107 FYHRY-KEDVKIMKEMNLDAFRFSISWS---------------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 107 ~yh~y-~eDi~lm~~lG~~~~R~si~Ws---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
-|.-. ++-+.-+|+||++++-+.=-.. .+.|.- |. .+-++++|++|.++||++|+.
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 35443 3448999999999997764222 111111 22 245899999999999999998
Q ss_pred cc--CCCC-------------chhhHhhcCC----C-------CChHHHHHHHHHHHHHHHHhc
Q 009780 171 IF--HWDL-------------PQALEDDYGG----F-------LSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 171 L~--h~~~-------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 208 (526)
+. |..- +.|+.....| | .+++++..+.+=++.-+++|+
T Consensus 320 vV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 320 VVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred eccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 64 3221 2333321011 2 356888888888888888885
No 67
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=55.75 E-value=50 Score=35.37 Aligned_cols=51 Identities=12% Similarity=0.333 Sum_probs=41.3
Q ss_pred hchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
..|++||++++++||+.|=+.|. .. ..++. +....+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999986 11 33555 567888999999998888866
No 68
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=55.39 E-value=75 Score=33.29 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCcccchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhh
Q 009780 101 GDIAVDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQAL 180 (526)
Q Consensus 101 ~~~a~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l 180 (526)
+=+|.=||+ |+.-+.-+ +.|+..+|+. | |++-. -+..+.+++.++++|+..=+..+|-.++.-+
T Consensus 74 PlVADIHFd-~~lAl~a~-~~g~dkiRIN-------P-----GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~ 137 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAM-AKGVAKVRIN-------P-----GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRL 137 (346)
T ss_pred CEEEeeCCC-cHHHHHHH-HhccCeEEEC-------C-----CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence 334555776 55555444 5599999874 2 43432 2678999999999999999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHHHH
Q 009780 181 EDDYGGFLSPRIVADFQDYAELC 203 (526)
Q Consensus 181 ~~~~ggw~~~~~~~~f~~ya~~~ 203 (526)
.++||+-..+..++--.++++.+
T Consensus 138 ~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 138 LEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99987655555666666666553
No 69
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=51.60 E-value=27 Score=38.28 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=45.4
Q ss_pred chhhchHHHHHHHHHcCCCeEEeecccccc--------ccCCCCC-------CCCCh--HHHHHHHHHHHHHHHCCCeEE
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRL--------LPNGKLS-------GGVNN--KGISFYNNLINELLSNGLQPF 168 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri--------~P~~~~~-------g~~n~--~gl~~y~~~i~~l~~~gI~p~ 168 (526)
|.|.-..+-++-+++||+++.=++=...-. .|..-.+ |.+|. -..+=+++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456666788999999999999877643321 1221000 01121 133558999999999999999
Q ss_pred EEc--cCCC
Q 009780 169 VTI--FHWD 175 (526)
Q Consensus 169 vtL--~h~~ 175 (526)
+.+ .|-.
T Consensus 99 ~D~V~NH~~ 107 (479)
T PRK09441 99 ADVVLNHKA 107 (479)
T ss_pred EEECccccc
Confidence 974 5643
No 70
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=51.26 E-value=11 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=32.8
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 009780 133 SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWD 175 (526)
Q Consensus 133 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~ 175 (526)
|++.|+. +.=-.++++...+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 6788887 66678899999999999999999 788887643
No 71
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.11 E-value=40 Score=34.13 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEEeecccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 112 KEDVKIMKEMNLDAFRFSISWS-RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
+|.+++|+++|++.+-++++-+ .+.+.- .+..+. +.+.+.++.++++||.+.++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i--~~~~s~---~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI--ISTHTY---DDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc--cCCCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999821 133332 122344 66788999999999986544
No 72
>PLN00196 alpha-amylase; Provisional
Probab=50.54 E-value=31 Score=37.45 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=45.6
Q ss_pred hhhchHHHHHHHHHcCCCeEEeeccccccccCCCCC---CCCC---hHHHHHHHHHHHHHHHCCCeEEEE--ccCC
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLS---GGVN---NKGISFYNNLINELLSNGLQPFVT--IFHW 174 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~---g~~n---~~gl~~y~~~i~~l~~~gI~p~vt--L~h~ 174 (526)
+|....+.+.-+++||+++.=++=......+.|--. -.+| +-.-+=++++|++++++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 466678889999999999998886544332222100 0111 112245899999999999999997 4563
No 73
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=50.41 E-value=95 Score=35.31 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=60.0
Q ss_pred hhchHHHH-HHHHHcCCCeEEee-ccccc------cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--cCCCC-
Q 009780 108 YHRYKEDV-KIMKEMNLDAFRFS-ISWSR------LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--FHWDL- 176 (526)
Q Consensus 108 yh~y~eDi-~lm~~lG~~~~R~s-i~Wsr------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--~h~~~- 176 (526)
|.-..+.+ .-+++||++++=++ |..+. -.|..-..-....-..+=++++|++|+++||++|+.+ .|...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 44445564 88999999999873 32221 0000000000011123458999999999999999975 35431
Q ss_pred ----------chhhHhh-----cCC-------CCChHHHHHHHHHHHHHHHHhc
Q 009780 177 ----------PQALEDD-----YGG-------FLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 177 ----------P~~l~~~-----~gg-------w~~~~~~~~f~~ya~~~~~~~g 208 (526)
|.+.... +.. +.++++++.+.+-++..+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1121110 011 2468999999999999999986
No 74
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=50.10 E-value=54 Score=36.06 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=41.0
Q ss_pred hhchHHH-----HHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 009780 108 YHRYKED-----VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP 177 (526)
Q Consensus 108 yh~y~eD-----i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 177 (526)
|..|.+| ++++.+.|++.+|+.++-+.+ +-....++.++++|+.+..++.+-.-|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 5667888 999999999999999866532 334666788888888887777553335
No 75
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=49.17 E-value=75 Score=32.52 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=58.8
Q ss_pred HHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCC----chhhHhhcCCCCCh
Q 009780 115 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDL----PQALEDDYGGFLSP 190 (526)
Q Consensus 115 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~----P~~l~~~~ggw~~~ 190 (526)
.+.+++-+-+.--++..|-.|-|++.+.+.. ..++++.++++|+++++++..++- +.-+.. =..++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~ 85 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNP 85 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCH
Confidence 6777777777778888999998887433322 357899999999999999977651 111111 12466
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 009780 191 RIVADFQDYAELCFKEFG 208 (526)
Q Consensus 191 ~~~~~f~~ya~~~~~~~g 208 (526)
..++.|++=+-.++++||
T Consensus 86 ~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 86 EARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 777888777777777775
No 76
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.86 E-value=52 Score=34.77 Aligned_cols=59 Identities=22% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
++|++.+.+.|++.+|+.++-|.+.-...+ +.--.+.++-..+.|+.++++|+++.++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 899999999999999999987755433211 22235678889999999999999987664
No 77
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=48.65 E-value=65 Score=33.96 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCeEEeec-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWS-RLLPNGKLSGG-VNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFL 188 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 188 (526)
+|.++.|+++|++.+-+++ +-+ ++...- |+ .+. +-..+.|+.+++.|+..+-.-.=+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~~---~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHTF---EEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 6889999999999655555 222 222221 22 233 5577889999999997442222445663
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccc
Q 009780 189 SPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYS 224 (526)
Q Consensus 189 ~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~ 224 (526)
++.+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2234455555555443225565655555777543
No 78
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=48.50 E-value=47 Score=34.71 Aligned_cols=77 Identities=16% Similarity=0.405 Sum_probs=43.8
Q ss_pred hhchHHHHHHHHHcCCCeEEeec----cccccccCC--------------------------CCCCCCCh----HHHHHH
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSI----SWSRLLPNG--------------------------KLSGGVNN----KGISFY 153 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si----~Wsri~P~~--------------------------~~~g~~n~----~gl~~y 153 (526)
|+||++.|+-|+=-|||..=.-+ -|-|++-+- ...|.... +=.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 57899999999998988543222 244443332 01122222 122334
Q ss_pred HHHHHHHHHCCCeEEEEccCCCCchhhHhhc
Q 009780 154 NNLINELLSNGLQPFVTIFHWDLPQALEDDY 184 (526)
Q Consensus 154 ~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ 184 (526)
+++++++++.||+|++--+---.|..|.+++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~ 128 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKY 128 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHS
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcC
Confidence 6899999999999999988878899888875
No 79
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=48.50 E-value=26 Score=39.20 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=40.8
Q ss_pred hhhchHHHHHHHHHcCCCeEEeecccc--------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWS--------------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Ws--------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
-+.-..+-++-+++||++++=++=-.. +|.|.- | ..+=++++|++++++||++|+.+
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~---G-----t~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF---G-----TMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 344567778999999999987654332 122221 2 33558999999999999999985
No 80
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=48.19 E-value=54 Score=34.61 Aligned_cols=85 Identities=7% Similarity=-0.013 Sum_probs=61.1
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccC-CCCchhhHhhcCCCCC
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFH-WDLPQALEDDYGGFLS 189 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h-~~~P~~l~~~~ggw~~ 189 (526)
=.+|++++.+.|++.+.+.++=|...-.... +.=-.+.++.+.++++.++++|+++.+++.. |..|. .+-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC
Confidence 4899999999999999999866665544311 3345678899999999999999999877754 55552 23333
Q ss_pred hHHHHHHHHHHHHHHH
Q 009780 190 PRIVADFQDYAELCFK 205 (526)
Q Consensus 190 ~~~~~~f~~ya~~~~~ 205 (526)
++.+.++++.+.+
T Consensus 196 ---~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 ---PSKVAYVAKELYD 208 (347)
T ss_pred ---HHHHHHHHHHHHH
Confidence 4555666666544
No 81
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=47.60 E-value=1.2e+02 Score=31.06 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcCCC--eEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCC---CCchhhHh--h
Q 009780 111 YKEDVKIMKEMNLD--AFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHW---DLPQALED--D 183 (526)
Q Consensus 111 y~eDi~lm~~lG~~--~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---~~P~~l~~--~ 183 (526)
..+-++.+++.|+. ++=+.+.|.+-.-.++ =.+|.+-..-...+|+.|+++|+++++.+.-+ +.|..-+- +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~--f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCD--FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCccee--eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 46778999999954 5666667874321110 12343333335799999999999988866422 22221110 0
Q ss_pred -----------c--------C---CCCChHHHHHHHHHHHHHHHHhcCcccE-EEeccCC
Q 009780 184 -----------Y--------G---GFLSPRIVADFQDYAELCFKEFGDRVKH-WITLNEP 220 (526)
Q Consensus 184 -----------~--------g---gw~~~~~~~~f~~ya~~~~~~~g~~V~~-W~t~NEp 220 (526)
+ + -+.||+.++.|.+..+.+.+ +| |++ |+=+||+
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 0 16789999999888776554 33 544 4447886
No 82
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=47.50 E-value=65 Score=32.94 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=60.2
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccC-CCCchhhHhhcCCCCC
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFH-WDLPQALEDDYGGFLS 189 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h-~~~P~~l~~~~ggw~~ 189 (526)
-.+|+++..+.|++.+++.++=|...-.... +.=-.+.++-..++|+.++++|+++.+++.. |..|. .|..+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~ 153 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNI-NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP 153 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC
Confidence 4899999999999999999865544322111 3334567888999999999999999887764 55552 33333
Q ss_pred hHHHHHHHHHHHHHHH
Q 009780 190 PRIVADFQDYAELCFK 205 (526)
Q Consensus 190 ~~~~~~f~~ya~~~~~ 205 (526)
.+.+.++++.+.+
T Consensus 154 ---~~~~~~~~~~~~~ 166 (287)
T PRK05692 154 ---PEAVADVAERLFA 166 (287)
T ss_pred ---HHHHHHHHHHHHH
Confidence 4566777777654
No 83
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=47.30 E-value=45 Score=36.65 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=42.9
Q ss_pred hhhchHHH-----HHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 009780 107 FYHRYKED-----VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP 177 (526)
Q Consensus 107 ~yh~y~eD-----i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 177 (526)
-|.+|.+| ++++++.|++.+|+.-.. |. ++-....|+.+++.|....+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l-------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL-------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC-------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 36777888 999999999999987633 21 2445677888889999888888876666
No 84
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.10 E-value=34 Score=34.55 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF 172 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 172 (526)
.+|++++.+.|++.+|+.++=|...-.... +.=-.+.++...+++..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 679999999999999999865544332210 222356788999999999999999999884
No 85
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.64 E-value=75 Score=33.42 Aligned_cols=56 Identities=21% Similarity=0.419 Sum_probs=45.0
Q ss_pred HHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 009780 115 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWD 175 (526)
Q Consensus 115 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~ 175 (526)
++.++++|.+++-+-+-|. |+. +..+|.+-+++..++.++|.+.||.-++-+.-++
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~--~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~ 167 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE--DDAINDRKHAFVERVGAECRANDIPFFLEPLTYD 167 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc--chHHHHHHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 5778999999999999987 553 1345778889999999999999999888543333
No 86
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.28 E-value=42 Score=32.92 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=49.1
Q ss_pred chHHHHHHHHHcCCCeEEee----------------------ccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 009780 110 RYKEDVKIMKEMNLDAFRFS----------------------ISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQP 167 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~s----------------------i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 167 (526)
.-+.=|+||++||.++..|- + | +||.| | +|. +.+..++..+++.|++-
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---G-Idl---~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---G-IDL---DNFEEIVQIALDAGVEK 205 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---C-ccH---HhHHHHHHHHHHcCCCe
Confidence 44777999999999988763 3 3 57776 4 777 88899999999999985
Q ss_pred EEEccCCCCchhhHhhcCCCCChHHHHHH
Q 009780 168 FVTIFHWDLPQALEDDYGGFLSPRIVADF 196 (526)
Q Consensus 168 ~vtL~h~~~P~~l~~~~ggw~~~~~~~~f 196 (526)
++ +|-- .-+-|+-.|-..++-+...
T Consensus 206 vi--PHIY--ssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 206 VI--PHVY--SSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred ec--cccc--eeccccccCCCCHHHHHHH
Confidence 54 2310 1122333566666555443
No 87
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=46.23 E-value=63 Score=36.64 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc----hhhHhh----
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP----QALEDD---- 183 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P----~~l~~~---- 183 (526)
++|+++.++.|++.+|+..+.+.+ +-....|+.++++|....+++.+=+.| ..+.+.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 445999999999999999755332 234555666666776655544432233 221111
Q ss_pred ------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 184 ------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 184 ------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
..|-+.|.-+ .+.++.+-+++ +.....++-|-..+
T Consensus 165 ~~~Gad~i~i~Dt~G~l~P~~~---~~lv~~lk~~~-~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 165 EDMGVDSLCIKDMAGLLKPYAA---YELVSRIKKRV-DVPLHLHCHATTGL 211 (593)
T ss_pred HHcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhc-CCeEEEEECCCCch
Confidence 1355555443 44445555666 34456777777765
No 88
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=46.22 E-value=30 Score=38.78 Aligned_cols=61 Identities=11% Similarity=0.293 Sum_probs=41.2
Q ss_pred hhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCC--------C--hHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGV--------N--NKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~--------n--~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
-+.-..+.++-+++||++++=++=-+.. |.. +..+ | .-..+-+++||++++++||++|+.+
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~--~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQV--DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCC--CCC--CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3455678899999999999877653311 111 0011 1 1123558999999999999999975
No 89
>PRK12568 glycogen branching enzyme; Provisional
Probab=46.14 E-value=86 Score=36.44 Aligned_cols=95 Identities=12% Similarity=0.239 Sum_probs=59.4
Q ss_pred hhchHHH-HHHHHHcCCCeEEeec--------cccc-----cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-
Q 009780 108 YHRYKED-VKIMKEMNLDAFRFSI--------SWSR-----LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF- 172 (526)
Q Consensus 108 yh~y~eD-i~lm~~lG~~~~R~si--------~Wsr-----i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~- 172 (526)
|.-..+. |.-+|+||++++=+.= +|.= ..|++.. |. .+-++.+|++|+++||++|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444444 6889999999985542 3421 1122211 32 35589999999999999999753
Q ss_pred -CCCCc-----------hhhH-h-h---cC-------CCCChHHHHHHHHHHHHHHHHhc
Q 009780 173 -HWDLP-----------QALE-D-D---YG-------GFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 173 -h~~~P-----------~~l~-~-~---~g-------gw~~~~~~~~f~~ya~~~~~~~g 208 (526)
|+..- .+-+ + . +. .+.++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43221 1110 0 0 01 23467888989998999898885
No 90
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=46.03 E-value=71 Score=31.71 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=47.3
Q ss_pred eeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 009780 128 FSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEF 207 (526)
Q Consensus 128 ~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 207 (526)
+.++|..+.++|.+..... ......+++.++++|+++++.+-.+....... -..++..++.|++=+-..+++|
T Consensus 26 v~~~f~~i~~~G~l~~~~~---~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANGTLNANPV---RSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCCeEEecCc---HHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 4456777766653211111 23467889999999999999987665443221 1246777888877666666666
Q ss_pred c
Q 009780 208 G 208 (526)
Q Consensus 208 g 208 (526)
+
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 5
No 91
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.72 E-value=73 Score=33.92 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
++|++.+.+.|++.++++++-|.+.-...+ +.--.+.++-..+.++.++++|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999977766433211 33345678889999999999999988874
No 92
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=43.68 E-value=1.4e+02 Score=31.16 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCeEEEEcc-CCCCchhhHh--hcCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccccc
Q 009780 154 NNLINELLSNGLQPFVTIF-HWDLPQALED--DYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSSN 226 (526)
Q Consensus 154 ~~~i~~l~~~gI~p~vtL~-h~~~P~~l~~--~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~ 226 (526)
+.|++.|++.|++.++.+. +...-..... .+..|.||+.++.|.+..+.+.+ .|- --.|+=.|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 6799999999999776542 1110000000 12347899999998877655433 232 2488889999987653
No 93
>PLN02784 alpha-amylase
Probab=42.44 E-value=61 Score=38.18 Aligned_cols=68 Identities=13% Similarity=0.283 Sum_probs=47.4
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCC-CC--CCCh--HHHHHHHHHHHHHHHCCCeEEEE--ccC
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKL-SG--GVNN--KGISFYNNLINELLSNGLQPFVT--IFH 173 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~-~g--~~n~--~gl~~y~~~i~~l~~~gI~p~vt--L~h 173 (526)
.+|....+.+.-+++||++++=++=.-.-..+.|-. .. .+|. -..+-++.+|++|+++||++|+. +.|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 578899999999999999999877654433332210 00 0111 12355899999999999999997 456
No 94
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=42.32 E-value=62 Score=33.84 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHh
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALED 182 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~ 182 (526)
..=|++|.+.|++.+=+|+ +.|++ .+...+..+.++++.+++.|++++|.+ .|.-|.+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~ 76 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE 76 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh
Confidence 3447899999998776665 34554 334578899999999999999999988 7887765
No 95
>PRK14706 glycogen branching enzyme; Provisional
Probab=41.62 E-value=1.2e+02 Score=34.82 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=53.4
Q ss_pred HHHHHcCCCeEEeec--------cccc-----cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--cCCC-----
Q 009780 116 KIMKEMNLDAFRFSI--------SWSR-----LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--FHWD----- 175 (526)
Q Consensus 116 ~lm~~lG~~~~R~si--------~Wsr-----i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--~h~~----- 175 (526)
.-+|+||++++-+.= +|.- ..|++.. | ..+=++.+|++|+++||++|+.+ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~-g-----~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~ 248 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRL-G-----TPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG 248 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCccccccccccc-C-----CHHHHHHHHHHHHHCCCEEEEEecccccCcchhh
Confidence 568999999976542 1211 0011100 1 23447999999999999999874 3532
Q ss_pred ------Cchh-hHhhcCC----C-------CChHHHHHHHHHHHHHHHHhc
Q 009780 176 ------LPQA-LEDDYGG----F-------LSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 176 ------~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 208 (526)
.|.+ ..+...| | .++++++.+.+=|+.-+++|+
T Consensus 249 l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 249 LAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred hhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 1110011 2 267888888999999999886
No 96
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=41.57 E-value=1.7e+02 Score=31.46 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=60.9
Q ss_pred chHHHHHHHHHcCCCeEEeeccccc-----------cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc-------
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSR-----------LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI------- 171 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsr-----------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL------- 171 (526)
...+-++.++++|++.+=+.--|-. ..|+. .++ ..| ...+++.+++.|+++=+=+
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccc
Confidence 4566788999999998888889954 33443 222 124 5888999999999976522
Q ss_pred ---cCCCCchhhHhhcC-----C-------CCChHHHHHHHHHHHHHHHHhc
Q 009780 172 ---FHWDLPQALEDDYG-----G-------FLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 172 ---~h~~~P~~l~~~~g-----g-------w~~~~~~~~f~~ya~~~~~~~g 208 (526)
..-..|.|+....+ | ..+|++.++..+-...+++.+|
T Consensus 132 ~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 12346888754211 1 4578889988888888888886
No 97
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=40.43 E-value=1.6e+02 Score=32.65 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCcEEEeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccc-cc---cccC
Q 009780 416 LLIYIKEKYNNPTLYITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLL-DN---FEWY 491 (526)
Q Consensus 416 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~-Dn---~EW~ 491 (526)
.|..++++|++..|+-||.-.+...... ....-.-.|. ..+...+...+..| +.||..|.|+ |. .-|.
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~~---~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWDT---SVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS----SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCccc---ccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCccc
Confidence 4678899999878999998665532100 0001111232 23444555566676 5799999985 21 2243
Q ss_pred CCCCCccceEEEeCCCCccccccchHHHHHHH
Q 009780 492 SGYSVRFGLYFVDYQNGLKRYPKHSAIWFKTF 523 (526)
Q Consensus 492 ~Gy~~RfGL~~VD~~~~~~R~~K~S~~~y~~i 523 (526)
.++.. ..+-||.+ +.+-+..+.++.++.+
T Consensus 391 ~n~~d--~~iivd~~-~~~~~~~p~yY~~gHf 419 (496)
T PF02055_consen 391 GNFCD--APIIVDSD-TGEFYKQPEYYAMGHF 419 (496)
T ss_dssp ---B----SEEEEGG-GTEEEE-HHHHHHHHH
T ss_pred CCCCC--ceeEEEcC-CCeEEEcHHHHHHHHH
Confidence 33332 33447776 3555666677766554
No 98
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=40.18 E-value=89 Score=30.69 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=43.8
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-ccCCCCc
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT-IFHWDLP 177 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt-L~h~~~P 177 (526)
++-+++++=|+++++||.+.+++...+ . |......+.....++..+++.+.+.+.||+..+= +.+++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGK--R-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345667788999999999998864432 1 2110001223345567888888999999986663 3445544
No 99
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.01 E-value=1.5e+02 Score=31.05 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHH
Q 009780 113 EDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRI 192 (526)
Q Consensus 113 eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~ 192 (526)
-+.+.+|++|.++..|=+=|. |++ +..+|..=.++.+++.++|++++|-=++=+..++.+.- +. .++++
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d~----~~~ey 179 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDG--DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--DN----NSAAY 179 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--cc----ccHHH
Confidence 357899999999999999886 664 25688888899999999999999998888877765431 11 23343
Q ss_pred HHHHHHHHHHHHHHhcC---cccEEEe
Q 009780 193 VADFQDYAELCFKEFGD---RVKHWIT 216 (526)
Q Consensus 193 ~~~f~~ya~~~~~~~g~---~V~~W~t 216 (526)
.+.--+.+-..++.|++ .|+.|=+
T Consensus 180 ak~kP~~V~~amkefs~~~~gvDVlKv 206 (329)
T PRK04161 180 AKLKPHKVNGAMKVFSDKRFGVDVLKV 206 (329)
T ss_pred HhhChHHHHHHHHHhccCCCCCcEEEE
Confidence 33333445556677765 3555543
No 100
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.73 E-value=1.1e+02 Score=33.47 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=59.7
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc----hhhHh---h
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP----QALED---D 183 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P----~~l~~---~ 183 (526)
.++|++++.+.|++.+|+.++-+.+. | ....|+.++++|+.+.+++..-+-| ..+.+ +
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~---------n------~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~ 162 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR---------N------LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKE 162 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH---------H------HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 46778999999999999998654431 1 4567899999999988877665556 21111 1
Q ss_pred -------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 184 -------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 184 -------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
..|..+|.-+ .+.++.+-++++ .....++-|-..+
T Consensus 163 l~~~Gad~I~i~Dt~G~l~P~~v---~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 163 MQEMGADSICIKDMAGILTPYVA---YELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHH---HHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 2456666544 334445555664 4446666666654
No 101
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=39.64 E-value=90 Score=32.49 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=61.6
Q ss_pred hchHHHHHHHHHcCCCeEEeec--cccccccCCC-----CCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCC------
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSI--SWSRLLPNGK-----LSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWD------ 175 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si--~Wsri~P~~~-----~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~------ 175 (526)
.+.++=++++++.|+|++=+.+ .+..|-=... ..|. ....+.=...+++.|+++||-||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga-~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGA-VKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccc-ccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 3568889999999999999998 7776642110 0011 111123457899999999999998664332
Q ss_pred -CchhhHhhcC----------CCCCh---HHHHHHHHHHHHHHHH
Q 009780 176 -LPQALEDDYG----------GFLSP---RIVADFQDYAELCFKE 206 (526)
Q Consensus 176 -~P~~l~~~~g----------gw~~~---~~~~~f~~ya~~~~~~ 206 (526)
.|.|-...-+ .|+|| ++.+.-.+.|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3444331111 27776 6666667777776643
No 102
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=39.64 E-value=2.2e+02 Score=29.85 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=60.9
Q ss_pred cccchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHh
Q 009780 103 IAVDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALED 182 (526)
Q Consensus 103 ~a~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~ 182 (526)
+|.=||+ |+-= -...+.|+..+|+. | |++-.+ +....+++.++++||-.=+..+|-.+..-+.+
T Consensus 78 VaDiHf~-~rla-~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 78 VADIHFD-YRLA-LEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred EEEeecc-HHHH-HHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 3444666 4433 33446678888863 3 444332 36899999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHH
Q 009780 183 DYGGFLSPRIVADFQDYAELC 203 (526)
Q Consensus 183 ~~ggw~~~~~~~~f~~ya~~~ 203 (526)
+||+-..+..++--.++|+.+
T Consensus 142 ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 142 KYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 998776666666555555554
No 103
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=39.48 E-value=1.9e+02 Score=30.89 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=58.0
Q ss_pred cccchhhchHHHHHHHHHc-CCCeEEeec--cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEccCCCCch
Q 009780 103 IAVDFYHRYKEDVKIMKEM-NLDAFRFSI--SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPF-VTIFHWDLPQ 178 (526)
Q Consensus 103 ~a~d~yh~y~eDi~lm~~l-G~~~~R~si--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~ 178 (526)
.+.+-.++ -+|++.++.+ ++. .++++ .| + ...| +.++.+.++++||+.. ++...|..|.
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d---~~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~ 97 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D---RVED------YEELARYAEELGLKIGAINPNLFQDDD 97 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c---cccC------HHHHHHHHHHcCCceeeeeCCccCCcc
Confidence 34444444 6788888888 555 66666 44 2 1123 5777888999999987 7777776675
Q ss_pred hhHhhcCCCCCh--HHHHHHHHHHHHHH---HHhcC
Q 009780 179 ALEDDYGGFLSP--RIVADFQDYAELCF---KEFGD 209 (526)
Q Consensus 179 ~l~~~~ggw~~~--~~~~~f~~ya~~~~---~~~g~ 209 (526)
+ ++|.+.|| ++++.-.++++.|. +.+|.
T Consensus 98 ~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 98 Y---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred c---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 34788876 66666677766665 56665
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=39.35 E-value=41 Score=37.58 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=40.1
Q ss_pred hchHHHHHHHHHcCCCeEEeeccc--------------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--c
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISW--------------SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--F 172 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~W--------------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--~ 172 (526)
.-..+-+.-+++||++++=++=-. -+|.|.- | ..+=++++|++++++||++|+.+ .
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~---G-----t~~df~~Lv~~ah~~Gi~vilD~V~N 99 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF---G-----TIDDFKDFVDEAHARGMRVIIDLVLN 99 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh---C-----CHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 334666889999999998665322 1222221 2 23558999999999999999974 4
Q ss_pred CC
Q 009780 173 HW 174 (526)
Q Consensus 173 h~ 174 (526)
|-
T Consensus 100 H~ 101 (539)
T TIGR02456 100 HT 101 (539)
T ss_pred cC
Confidence 53
No 105
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=39.31 E-value=1.1e+02 Score=32.15 Aligned_cols=95 Identities=15% Similarity=0.289 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeEEeec-cc-cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SW-SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLS 189 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 189 (526)
++.+++|+++|++.+-+++ += .++...- ....+. +-..+.++.+++.|+..+-.-.=+++|.. +
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPgq---------t 165 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTHNE---EDVYEAIANAKKAGFDNISIDLIYALPGQ---------T 165 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCCC---------C
Confidence 7889999999999888777 32 3444332 122344 56778999999999974433234556632 2
Q ss_pred hHHHHHHHHHHHHHHHHhc-CcccEEEeccCCcccc
Q 009780 190 PRIVADFQDYAELCFKEFG-DRVKHWITLNEPHSYS 224 (526)
Q Consensus 190 ~~~~~~f~~ya~~~~~~~g-~~V~~W~t~NEp~~~~ 224 (526)
.+.|.+=++.+.+ ++ +.|..+...-+|+...
T Consensus 166 ---~~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 166 ---IEDFKESLAKALA-LDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred ---HHHHHHHHHHHHc-cCCCEEeeeceeecCCChh
Confidence 2334444444433 33 3455554455776543
No 106
>PRK14705 glycogen branching enzyme; Provisional
Probab=39.26 E-value=1.6e+02 Score=36.37 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=58.3
Q ss_pred hHHH-HHHHHHcCCCeEEeec--------cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--cCCCCchh
Q 009780 111 YKED-VKIMKEMNLDAFRFSI--------SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--FHWDLPQA 179 (526)
Q Consensus 111 y~eD-i~lm~~lG~~~~R~si--------~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--~h~~~P~~ 179 (526)
..+. |.-+|+||++++=+.= +|. -.|.+-..-....-..+=++.+|++|+++||.+|+.+ .|+..=.|
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 3344 6889999999986542 342 1111100000011123458999999999999999985 35421112
Q ss_pred hHhhc----------------CC-------CCChHHHHHHHHHHHHHHHHhc
Q 009780 180 LEDDY----------------GG-------FLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 180 l~~~~----------------gg-------w~~~~~~~~f~~ya~~~~~~~g 208 (526)
....+ .. +.++++++.+.+=+..-+++|+
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11010 11 3467888989999999999986
No 107
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.23 E-value=1.5e+02 Score=30.89 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=64.3
Q ss_pred HHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHH
Q 009780 114 DVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIV 193 (526)
Q Consensus 114 Di~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~ 193 (526)
-.+.+|++|.++..|=+=|. |++ +..+|..=.++.+++.++|++++|-=++=+..++.+.- +. .+.++.
T Consensus 110 S~~rike~GadavK~Llyy~---pD~--~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~ya 178 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD---VDE--PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYA 178 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHH
Confidence 37889999999999999886 665 25588888899999999999999998887777665532 11 122333
Q ss_pred HHHHHHHHHHHHHhcC---cccEEEe
Q 009780 194 ADFQDYAELCFKEFGD---RVKHWIT 216 (526)
Q Consensus 194 ~~f~~ya~~~~~~~g~---~V~~W~t 216 (526)
+.--+.+-..++.|++ .|+.|=+
T Consensus 179 k~kP~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 179 KVKPHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred hhChHHHHHHHHHhccCCCCCcEEEE
Confidence 3334444456677765 3555543
No 108
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.08 E-value=1.1e+02 Score=30.71 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChH
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPR 191 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 191 (526)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+... .
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------C
Confidence 6899999999999999987432 2466789999999999999998866321 1
Q ss_pred HHHHHHHHHHHHHH
Q 009780 192 IVADFQDYAELCFK 205 (526)
Q Consensus 192 ~~~~f~~ya~~~~~ 205 (526)
..+.+.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~ 149 (266)
T cd07944 136 SDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHHHHHHh
Confidence 24456677776644
No 109
>PRK09505 malS alpha-amylase; Reviewed
Probab=38.82 E-value=57 Score=37.63 Aligned_cols=65 Identities=14% Similarity=0.272 Sum_probs=42.2
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccc-----------cCCCCCC-------CCC--hHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLL-----------PNGKLSG-------GVN--NKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~-----------P~~~~~g-------~~n--~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
..+-+.-+++||++++=++=-...+. |....-| .+| +-..+=++++|++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999998875443321 1000000 111 223466899999999999999997
Q ss_pred c--cCCC
Q 009780 171 I--FHWD 175 (526)
Q Consensus 171 L--~h~~ 175 (526)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 4 5644
No 110
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=38.78 E-value=40 Score=35.42 Aligned_cols=96 Identities=25% Similarity=0.414 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCCc-----EEEeecCCCCCCCCCCCCc----cccCChhhHHHHHHHHHHHHHHHHcC-CC---eE
Q 009780 411 RGFRDLLIYIKEKYNNPT-----LYITENGYDDFNNATLPLK----EALKDPMRLDYFKNHLLFLRKAIKEG-VN---VK 477 (526)
Q Consensus 411 ~GL~~~L~~~~~rY~~pp-----I~ITENG~~~~~~~~~~~~----~~i~D~~Ri~yl~~hL~~v~~Ai~dG-v~---v~ 477 (526)
.--...|.++.++|+-|+ |+=.|.|++.........+ =...|..|..|.++.|.+.++-+++| ++ .+
T Consensus 110 ~~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~ 189 (343)
T COG2951 110 AQYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALK 189 (343)
T ss_pred HHHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCccccc
Confidence 345568899999999753 5557999987532211111 12348999999999998888888776 77 55
Q ss_pred EEeecccccccccCCCCCC------ccceEEEeCCCCccccccch
Q 009780 478 GYFAWSLLDNFEWYSGYSV------RFGLYFVDYQNGLKRYPKHS 516 (526)
Q Consensus 478 GY~~WSl~Dn~EW~~Gy~~------RfGL~~VD~~~~~~R~~K~S 516 (526)
| +|+..+.. -|=.|.||++.+.+|-+..|
T Consensus 190 G----------SwAGAmGq~QFmPss~~~YaVD~DGDG~~Diw~s 224 (343)
T COG2951 190 G----------SWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIWNS 224 (343)
T ss_pred c----------hhhhccCCcccCcHHHHHhhhcCCCCCccCCccC
Confidence 5 56654433 56677899997778877743
No 111
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.60 E-value=2.4e+02 Score=28.40 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCC
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHW 174 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~ 174 (526)
+.+++++.+.|++.+|+.++=|...-.... |.--.+.++...+.++.++++|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEAL-GTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 368999999999999998865544322100 22335678889999999999999998866555
No 112
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=38.30 E-value=1.1e+02 Score=31.61 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCC-eEEeec-ccc-cccc-C-CCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCC
Q 009780 112 KEDVKIMKEMNLD-AFRFSI-SWS-RLLP-N-GKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGG 186 (526)
Q Consensus 112 ~eDi~lm~~lG~~-~~R~si-~Ws-ri~P-~-~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~gg 186 (526)
+|.+++|+++|++ .+-+++ +-+ ++.- . . -..+. +-+.+.++.++++||.+.+.+. +.+|.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in---Kg~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~-------- 181 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSIN---KGSTF---EDFIRAAELARKYGAGVKAYLL-FKPPF-------- 181 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC---CCCCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCC--------
Confidence 7889999999998 466666 322 2221 1 1 11344 5678999999999999666553 23452
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccccccCcccCcCCC
Q 009780 187 FLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSSNGYNKGTDAP 235 (526)
Q Consensus 187 w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~~y~~G~~pP 235 (526)
....+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 182 ~se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 182 LSEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred CChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 1122667777777777765 45778887777777765444455666655
No 113
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.17 E-value=1.2e+02 Score=30.86 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc-CCCCchhhHhhcCCCCCh
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF-HWDLPQALEDDYGGFLSP 190 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h~~~P~~l~~~~ggw~~~ 190 (526)
.+|++...+.|++.+++.++=|...-.... +.--.+.++...+.++.++++|+++.+++. .|+.|. .+-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~-- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV-- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC--
Confidence 789999999999999999966554322111 222356788899999999999999998876 455552 2323
Q ss_pred HHHHHHHHHHHHHHH
Q 009780 191 RIVADFQDYAELCFK 205 (526)
Q Consensus 191 ~~~~~f~~ya~~~~~ 205 (526)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 34556666666654
No 114
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=38.15 E-value=1.5e+02 Score=30.80 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCCeEEEEccCCCC-----chhhHhh------------------------cCCCCChHHHHHHHHHHHHHH
Q 009780 154 NNLINELLSNGLQPFVTIFHWDL-----PQALEDD------------------------YGGFLSPRIVADFQDYAELCF 204 (526)
Q Consensus 154 ~~~i~~l~~~gI~p~vtL~h~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~~ 204 (526)
..||+.|+++|++.++.+.-+-. |..-+-. +-.+.||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 67899999999998887654422 2211100 013779999999999988776
Q ss_pred HHhcC-cccEEEeccCCcccc
Q 009780 205 KEFGD-RVKHWITLNEPHSYS 224 (526)
Q Consensus 205 ~~~g~-~V~~W~t~NEp~~~~ 224 (526)
...+. -+-.|+=.|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 65432 356789999998764
No 115
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=37.81 E-value=2.1e+02 Score=29.57 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCeEE--eeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCC-----chhhHhh-
Q 009780 112 KEDVKIMKEMNLDAFR--FSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDL-----PQALEDD- 183 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R--~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~-----P~~l~~~- 183 (526)
.+-++.+++.++..=- +.+.|.. ..+ .=.+|.+-..--.+||+.|+++|++.++.+.-+-. |...+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~--~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~ 102 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMD--SYR--LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMD 102 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhC--CCC--ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHH
Confidence 4445566666655333 3334432 111 01233322222368999999999997776542211 2221100
Q ss_pred -----------------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009780 184 -----------------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSY 223 (526)
Q Consensus 184 -----------------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~ 223 (526)
+-.|.||+.++.|.+..+.+....|- --.|+=.|||..+
T Consensus 103 ~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 103 KGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred CCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 01378999999999888877655543 3478889998643
No 116
>PLN02923 xylose isomerase
Probab=37.80 E-value=5.7e+02 Score=27.88 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=48.8
Q ss_pred hchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHH----HHHCCCe-EEEEccCCCCchhhHhh
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINE----LLSNGLQ-PFVTIFHWDLPQALEDD 183 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~----l~~~gI~-p~vtL~h~~~P~~l~~~ 183 (526)
+|.+-=++.|.+||+..|-|- =..|.|++ .... |-.+-.+++++. +.+.||+ +++|..-|..|....
T Consensus 123 ~k~daaFEf~~kLG~~y~cFH--D~Dl~Peg---~sl~-E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~-- 194 (478)
T PLN02923 123 RRMRANFEFLKKLGVDRWCFH--DRDIAPDG---KTLE-ESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH-- 194 (478)
T ss_pred HHHHHHHHHHHHhCCCeEccC--ccccCCCC---CCHH-HHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC--
Confidence 344445779999999987663 45678887 2222 222334555544 4557998 456777899998875
Q ss_pred cCCCCChH
Q 009780 184 YGGFLSPR 191 (526)
Q Consensus 184 ~ggw~~~~ 191 (526)
|+..||+
T Consensus 195 -GAaTspd 201 (478)
T PLN02923 195 -GAATSSE 201 (478)
T ss_pred -CcCCCCC
Confidence 8888874
No 117
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.57 E-value=1.4e+02 Score=31.37 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCeEEeec-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWS-RLLPNGKLSGG-VNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQ 178 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~ 178 (526)
++.++.|+++|++.+.+++ +-+ ++...- |+ .+. +-+.+.|+.+++.|+.++-.-.-+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSA---KNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 7889999999999777777 443 333322 22 333 5577899999999998654333455663
No 118
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=36.66 E-value=1.8e+02 Score=30.38 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCCeEE--eeccccccccCCCCCCCCChHHHHHH--HHHHHHHHHCCCeEEEEccCCCCc--------h
Q 009780 111 YKEDVKIMKEMNLDAFR--FSISWSRLLPNGKLSGGVNNKGISFY--NNLINELLSNGLQPFVTIFHWDLP--------Q 178 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R--~si~Wsri~P~~~~~g~~n~~gl~~y--~~~i~~l~~~gI~p~vtL~h~~~P--------~ 178 (526)
..+-++.+++.|+..== +.+.|..- .+ +=.+|.+-..-- .+||+.|++.|++.++.+.-+-.+ .
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~ 101 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDR--RR--DFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPP 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccC--cc--ceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHH
Confidence 35556667766665433 33344321 11 011222211222 789999999999988876544332 1
Q ss_pred hhH--hh-----------c-----------CCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 179 ALE--DD-----------Y-----------GGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 179 ~l~--~~-----------~-----------ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
+-+ ++ + -.+.||+.++.|.+..+.+...+|- --+|+=.|||..
T Consensus 102 ~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 102 YDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 111 00 0 1277999999998887776665543 356788899864
No 119
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=35.76 E-value=1.1e+02 Score=30.11 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhc
Q 009780 150 ISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 150 l~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 208 (526)
.+...+.|..|+++|+++++++--+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3567788999999999999999765544222 112456667777777777777776
No 120
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=34.83 E-value=76 Score=36.64 Aligned_cols=57 Identities=16% Similarity=0.353 Sum_probs=39.4
Q ss_pred HHHHHHcCCCeEEe----eccccccccCCCCC--------------CCC--Ch---HHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 115 VKIMKEMNLDAFRF----SISWSRLLPNGKLS--------------GGV--NN---KGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 115 i~lm~~lG~~~~R~----si~Wsri~P~~~~~--------------g~~--n~---~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
|+-+|+|||+++.+ ++.+.+..++.... +.+ |. ..+.=++.||++|+++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999985 34444444322000 111 11 247789999999999999999975
No 121
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=34.70 E-value=93 Score=36.63 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=43.3
Q ss_pred hchHHHHHHHHHcCCCeEEeecccc---------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWS---------------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI-- 171 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Ws---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL-- 171 (526)
....+-+.-+++||++++=+|=-+. +|.|+- | +.+=+++++++++++||.+|+.+
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL---G-----GEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4467889999999999986665432 333332 2 34558999999999999999975
Q ss_pred cCCC
Q 009780 172 FHWD 175 (526)
Q Consensus 172 ~h~~ 175 (526)
.|..
T Consensus 88 NH~a 91 (825)
T TIGR02401 88 NHMA 91 (825)
T ss_pred cccc
Confidence 4644
No 122
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=34.66 E-value=2.5e+02 Score=29.01 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=60.0
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCC---CchhhHhh----
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWD---LPQALEDD---- 183 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~---~P~~l~~~---- 183 (526)
.++-++.+++.|+..=-+-|+|.-....+--+=.+|.+-..--.+||+.|+++|+++++.+.-+- .+.+-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 35556667766655444444322111111000112332223347899999999999888663221 11110000
Q ss_pred -------------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccc
Q 009780 184 -------------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYS 224 (526)
Q Consensus 184 -------------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~ 224 (526)
+--|.||+.++.|.+..+..+...|= --+|+=.|||..+.
T Consensus 106 ~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 106 LIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred EEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 01267899999887765544444432 45788899998653
No 123
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.05 E-value=2.6e+02 Score=27.90 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIF 172 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 172 (526)
.+|+++..+.|++.+|+..+-+.+. -..++++.++++|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~---------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD---------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH---------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999988665431 246788999999999888873
No 124
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=33.47 E-value=77 Score=37.56 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=43.6
Q ss_pred hhchHHHHHHHHHcCCCeEEeec---------------cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc-
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSI---------------SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI- 171 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si---------------~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL- 171 (526)
+....+-+.-+++||++++=+|= .+.+|.|.- | +.+-+++++++++++||++|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34468889999999999886554 344555553 3 23558999999999999999975
Q ss_pred -cCC
Q 009780 172 -FHW 174 (526)
Q Consensus 172 -~h~ 174 (526)
.|-
T Consensus 91 ~NH~ 94 (879)
T PRK14511 91 PNHM 94 (879)
T ss_pred cccc
Confidence 454
No 125
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=33.41 E-value=1.1e+02 Score=33.36 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCeEEeec-cccc-cccCCCCCCC-CChHHHHHHHHHHHHHHHCC-CeEEEEccCCCCchhhHhhcCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWSR-LLPNGKLSGG-VNNKGISFYNNLINELLSNG-LQPFVTIFHWDLPQALEDDYGGF 187 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Wsr-i~P~~~~~g~-~n~~gl~~y~~~i~~l~~~g-I~p~vtL~h~~~P~~l~~~~ggw 187 (526)
+|.+++|+++|+|.+.+++ +-+. +.-.- |+ .+. +-..+.|+.++++| +.+.+.| =+++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~---~~~~~~i~~l~~~g~~~v~~Dl-I~GlPg--------- 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDR---EEVLARLEELVARDRAAVVCDL-IFGLPG--------- 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCH---HHHHHHHHHHHhCCCCcEEEEE-EeeCCC---------
Confidence 6889999999999888888 5432 22211 22 222 44567899999999 5555544 345552
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccccccCcccCcCC
Q 009780 188 LSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSSNGYNKGTDA 234 (526)
Q Consensus 188 ~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~~y~~G~~p 234 (526)
++.+.|.+=.+.+.+-=-+.|..+...-||+......+..|..+
T Consensus 227 ---qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 ---QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12233433344444322367888888888886543333345443
No 126
>PRK07094 biotin synthase; Provisional
Probab=33.35 E-value=73 Score=32.76 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=39.9
Q ss_pred chHHHHHHHHHcCCCeEEeec-cc-cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 110 RYKEDVKIMKEMNLDAFRFSI-SW-SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si-~W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
.-+|+++.|+++|++.+-+++ +- .++...-. ...+. +-+.+.|+.+++.||.+..+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~--~~~s~---~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH--PGMSF---ENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCeecce
Confidence 347899999999999999988 33 34444321 22333 66788999999999975443
No 127
>PRK05474 xylose isomerase; Provisional
Probab=33.22 E-value=2.1e+02 Score=31.06 Aligned_cols=72 Identities=11% Similarity=0.268 Sum_probs=48.8
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHH----HHHHCCCe-EEEEccCCCCchhhHhhcC
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLIN----ELLSNGLQ-PFVTIFHWDLPQALEDDYG 185 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~----~l~~~gI~-p~vtL~h~~~P~~l~~~~g 185 (526)
.+.=++.|++||+..|-|- =..|.|++ .... |-.+-.+.+++ .+.+.||+ +++|..-|..|.+.. |
T Consensus 81 ~d~afe~~~kLg~~~~~FH--D~D~~peg---~s~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---G 151 (437)
T PRK05474 81 ADAAFEFFTKLGVPYYCFH--DVDVAPEG---ASLK-EYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---G 151 (437)
T ss_pred HHHHHHHHHHhCCCeeccC--ccccCCCC---CCHH-HHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---C
Confidence 4445788999999987663 45678887 3222 22233455544 45567888 567888899998864 8
Q ss_pred CCCChH
Q 009780 186 GFLSPR 191 (526)
Q Consensus 186 gw~~~~ 191 (526)
+..||+
T Consensus 152 A~Tnpd 157 (437)
T PRK05474 152 AATNPD 157 (437)
T ss_pred cCCCCC
Confidence 999874
No 128
>PLN02389 biotin synthase
Probab=33.10 E-value=1.2e+02 Score=32.33 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=42.5
Q ss_pred chHHHHHHHHHcCCCeEEeeccccc-cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSR-LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.-+|.++.||++|++.|-.+++=++ +.|+-. ..-++ +..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~s~---e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTRSY---DDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCCCH---HHHHHHHHHHHHcCCeEeEEE
Confidence 4589999999999999999884233 555531 22244 667899999999999976653
No 129
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.26 E-value=1.7e+02 Score=30.20 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCC--eEEeeccccccccCCCCCC--CCChHHHHHHHHHHHHHHHCCCeEEEEccCC---CCchhhH--h
Q 009780 112 KEDVKIMKEMNLD--AFRFSISWSRLLPNGKLSG--GVNNKGISFYNNLINELLSNGLQPFVTIFHW---DLPQALE--D 182 (526)
Q Consensus 112 ~eDi~lm~~lG~~--~~R~si~Wsri~P~~~~~g--~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---~~P~~l~--~ 182 (526)
.+-++-+++.|+. ++=+++.|........--| .+|.+-..--++||+.|+++|++.++.+.-+ +.|..-+ +
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 4555666666654 4444445643222100001 1222111223678999999999988876533 2333210 0
Q ss_pred h-c-------------------C---CCCChHHHHHHHHHHHHHHHHhcCccc-EEEeccCCccc
Q 009780 183 D-Y-------------------G---GFLSPRIVADFQDYAELCFKEFGDRVK-HWITLNEPHSY 223 (526)
Q Consensus 183 ~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~~g~~V~-~W~t~NEp~~~ 223 (526)
+ + + .+.||+.++.|.+..+.+ +..-|+ +|+=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 0 0 266999999998877765 333444 57788899654
No 130
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=32.09 E-value=1.9e+02 Score=30.87 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCeEEeec-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHhhcCCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWS-RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQ-PFVTIFHWDLPQALEDDYGGFL 188 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~h~~~P~~l~~~~ggw~ 188 (526)
++.++.|+++|+|.+-+++ +-+ ++.-.- .-..+. +-..+.++.+++.|++ +.+.| =+++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l--~R~~~~---~~~~~ai~~l~~~G~~~v~~dl-I~GlPg---------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC--GRSHRV---KDIFAAVDLIHQAGIENFSLDL-ISGLPH---------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC----------
Confidence 6889999999999777777 332 222221 011233 3456789999999998 44554 345663
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccccccCcccCcC
Q 009780 189 SPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSSNGYNKGTD 233 (526)
Q Consensus 189 ~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~~y~~G~~ 233 (526)
++.+.+.+=++.+.+-=-+.|..+...-||+.....-+..|.+
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 1223344433333332235677777777887655444444543
No 131
>PRK12677 xylose isomerase; Provisional
Probab=32.05 E-value=3.6e+02 Score=28.83 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=46.0
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCCCC
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPF-VTIFHWDLPQALEDDYGGFLS 189 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~~l~~~~ggw~~ 189 (526)
.+|-++.++++|++.+=+.. ..+.|-. -.... --+..+++-+.+.++||++. +|...|..|.+ +.|++.+
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~-~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts 103 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAE-RDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTS 103 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC---CChhh-hHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCC
Confidence 58889999999999886632 2244433 11111 11346788888999999955 56665656644 2378887
Q ss_pred h
Q 009780 190 P 190 (526)
Q Consensus 190 ~ 190 (526)
+
T Consensus 104 ~ 104 (384)
T PRK12677 104 N 104 (384)
T ss_pred C
Confidence 5
No 132
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.02 E-value=1.6e+02 Score=29.74 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=50.0
Q ss_pred cchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhh
Q 009780 105 VDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQAL 180 (526)
Q Consensus 105 ~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l 180 (526)
++..+...+=.+.+|++|+..+|-+..=+|--|.+. +| +-. +.+..+-+.+.+.||..+.+.++-..+..+
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 345666777788999999999999985577777642 23 224 556666777799999977777664444444
No 133
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=31.85 E-value=2.8e+02 Score=29.39 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHH
Q 009780 119 KEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQD 198 (526)
Q Consensus 119 ~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ 198 (526)
.+.|+...|+ .| |++-. --+..+.+++.++++|+..=+..+|-.++.-+.++||+-.....++--.+
T Consensus 98 ~~~G~~~iRI-------NP-----GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 98 AEAGADALRI-------NP-----GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHhCCCEEEE-------CC-----CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 4679999965 44 44411 02578999999999999999999999999999999876455556666666
Q ss_pred HHHHH
Q 009780 199 YAELC 203 (526)
Q Consensus 199 ya~~~ 203 (526)
+++.+
T Consensus 165 ~~~~l 169 (360)
T PRK00366 165 HAKIL 169 (360)
T ss_pred HHHHH
Confidence 66554
No 134
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=31.84 E-value=1.7e+02 Score=33.18 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=61.6
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc----hhhHhh---
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP----QALEDD--- 183 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P----~~l~~~--- 183 (526)
.++|++++.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-..| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~ 157 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEE 157 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 4566899999999999999866543 224667788899999888887665555 222111
Q ss_pred -------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 184 -------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 184 -------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
..|...|.-+ .+.++.+-++++ .....++-|-..+
T Consensus 158 ~~~~Gad~I~i~Dt~G~~~P~~v---~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 158 LLEMGVDSICIKDMAGILTPKAA---YELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HHHcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhCC-CceEEEecCCCCc
Confidence 2456666543 445555556665 4456788887765
No 135
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.54 E-value=2.3e+02 Score=28.62 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
-++|+++..+.|++.+|+++..+. ++-....++.++++|+++.+++
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEE
Confidence 488999999999999999875533 3556788999999999988766
No 136
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.45 E-value=4e+02 Score=26.45 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPF 168 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~ 168 (526)
+++-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCcee
Confidence 68999999999999988764211111111 12333 456788889999999964
No 137
>PRK03705 glycogen debranching enzyme; Provisional
Probab=30.82 E-value=1e+02 Score=35.37 Aligned_cols=54 Identities=13% Similarity=0.346 Sum_probs=36.8
Q ss_pred HHHHHHcCCCeEEeecc-----------------c-------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 115 VKIMKEMNLDAFRFSIS-----------------W-------SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 115 i~lm~~lG~~~~R~si~-----------------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
|.-+|+||++++=++=- | -.+.|.- |.-....++-+++||++|+++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 88999999999866421 2 1222221 2111134567899999999999999997
Q ss_pred c
Q 009780 171 I 171 (526)
Q Consensus 171 L 171 (526)
+
T Consensus 262 v 262 (658)
T PRK03705 262 V 262 (658)
T ss_pred E
Confidence 5
No 138
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=30.65 E-value=2.7e+02 Score=27.95 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCCeEEeec--cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEcc-CCCCchhhHhhcCC
Q 009780 111 YKEDVKIMKEMNLDAFRFSI--SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQ-PFVTIF-HWDLPQALEDDYGG 186 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~-h~~~P~~l~~~~gg 186 (526)
|+|-+.+.|++|++.+-+|| +=.|+.--. |+. +--..+.+++.+.|+. |-+||. |--.| =|
T Consensus 20 W~erl~~AK~~GFDFvEmSvDEsDeRLaRLD-----Ws~---~er~~l~~ai~etgv~ipSmClSaHRRfP-------fG 84 (287)
T COG3623 20 WLERLALAKELGFDFVEMSVDESDERLARLD-----WSK---EERLALVNAIQETGVRIPSMCLSAHRRFP-------FG 84 (287)
T ss_pred HHHHHHHHHHcCCCeEEEeccchHHHHHhcC-----CCH---HHHHHHHHHHHHhCCCccchhhhhhccCC-------CC
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 009780 187 FLSPRIVADFQDYAELCFK 205 (526)
Q Consensus 187 w~~~~~~~~f~~ya~~~~~ 205 (526)
=.++.+++.-.+.-+++.+
T Consensus 85 S~D~~~r~~aleiM~KaI~ 103 (287)
T COG3623 85 SKDEATRQQALEIMEKAIQ 103 (287)
T ss_pred CCCHHHHHHHHHHHHHHHH
No 139
>PRK10785 maltodextrin glucosidase; Provisional
Probab=30.27 E-value=88 Score=35.46 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCeEEeecc-------------ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 111 YKEDVKIMKEMNLDAFRFSIS-------------WSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~-------------Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
..+-+.-+++|||+++=++=- +-+|.|.= | ..+=+++++++++++||++|+.+
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~---G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL---G-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 466688899999999877642 22233332 2 23558999999999999999975
No 140
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=29.74 E-value=1.9e+02 Score=29.54 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.+|++...++|++.+-+.++=|...-.... +.=-.+.++.+.++++.++++|+++-+++
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 799999999999999988866655443211 33356788999999999999999999988
No 141
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.16 E-value=3.9e+02 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--cCCCCchhh
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI--FHWDLPQAL 180 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--~h~~~P~~l 180 (526)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|+++.+.+ .|...|..+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 689999999999999998754322 224688999999999988877 344445443
No 142
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=28.96 E-value=2.1e+02 Score=32.06 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCeEEeec-c-ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-S-WSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLS 189 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~-Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 189 (526)
++.+++|+++|++.+-+++ + -.++.-.-. +| .+. +-..+.++.++++|+++.+.| =+++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht~---~~v~~Ai~~lr~~G~~v~~~L-M~GLPg----------- 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HTV---RDVVEATRLLRDAGLKVVYHI-MPGLPG----------- 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CCH---HHHHHHHHHHHHcCCeEEEEe-ecCCCC-----------
Confidence 7889999999999888887 2 233332210 12 222 445678889999999855554 345553
Q ss_pred hHHHHHHHHHHHHHHH--Hhc-CcccEEEeccCCccccccCcccCcCCCC
Q 009780 190 PRIVADFQDYAELCFK--EFG-DRVKHWITLNEPHSYSSNGYNKGTDAPG 236 (526)
Q Consensus 190 ~~~~~~f~~ya~~~~~--~~g-~~V~~W~t~NEp~~~~~~~y~~G~~pPg 236 (526)
++.+.+.+=++.+++ .++ |.|+.+.+.=+|+.....-|..|.|.|.
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 223445555556665 354 5777777777777665555667777664
No 143
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.80 E-value=89 Score=31.85 Aligned_cols=70 Identities=13% Similarity=0.302 Sum_probs=49.2
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCCh
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSP 190 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~ 190 (526)
.++=+++++++||+.+.+..- +.=+++.++||+++++.+-+++| +|.+|--..|.=++.-|....++
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~ 174 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTR 174 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE
T ss_pred HHHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHH
Confidence 467799999999999999862 22478999999999999999998 67776666787776666555554
Q ss_pred HHH
Q 009780 191 RIV 193 (526)
Q Consensus 191 ~~~ 193 (526)
+-+
T Consensus 175 EgV 177 (273)
T PF10566_consen 175 EGV 177 (273)
T ss_dssp --S
T ss_pred HHh
Confidence 443
No 144
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=28.71 E-value=78 Score=29.10 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=38.8
Q ss_pred cccchhhchHHHHHH-HHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 009780 103 IAVDFYHRYKEDVKI-MKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQP 167 (526)
Q Consensus 103 ~a~d~yh~y~eDi~l-m~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 167 (526)
.+|-.....++||+. ++++|+..+++.+.|+--.-. ..+..+| -..|+++||.|
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~----d~it~~g-------r~~l~~~giap 90 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT----DWITEDA-------REKLREYGIAP 90 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh----HHCCHHH-------HHHHHhcCccC
Confidence 456777788888765 677899999888877533322 3455555 57899999986
No 145
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.53 E-value=2.3e+02 Score=29.88 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCCeEEeec-cccc-cccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeE-EEEccCCCCchhhHhhcCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWSR-LLPNGKLSGG-VNNKGISFYNNLINELLSNGLQP-FVTIFHWDLPQALEDDYGGF 187 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Wsr-i~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p-~vtL~h~~~P~~l~~~~ggw 187 (526)
++.++.|+++|+|.+.+++ +=+. +.-.- |+ .+. +-..+.++.+++.|+.. -+.| =+++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~~~---~~~~~ai~~~~~~g~~~v~~Dl-i~GlPg--------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLL---GRTHSS---SKAIDAVQECSEHGFSNLSIDL-IYGLPT--------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC---------
Confidence 6889999999999666665 2221 11111 11 222 44567888999999974 3443 345563
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccc
Q 009780 188 LSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYS 224 (526)
Q Consensus 188 ~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~ 224 (526)
++.+.|.+=++.+.+.=-+.|..+...-||+...
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 2344566666665543236788888888888643
No 146
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=28.27 E-value=3.3e+02 Score=29.50 Aligned_cols=72 Identities=13% Similarity=0.299 Sum_probs=48.0
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHH----HHHHHCCCe-EEEEccCCCCchhhHhhcC
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLI----NELLSNGLQ-PFVTIFHWDLPQALEDDYG 185 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i----~~l~~~gI~-p~vtL~h~~~P~~l~~~~g 185 (526)
.+.=++.|.+||+..|-| -=..|.|++ ....+ -.+-.++++ +.+.+.||+ +++|..-|..|.+.. |
T Consensus 80 ~daaFef~~kLg~~~~~F--HD~D~~peg---~~~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---G 150 (434)
T TIGR02630 80 VDAAFEFFEKLGVPYYCF--HDRDIAPEG---ASLRE-TNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---G 150 (434)
T ss_pred HHHHHHHHHHhCCCeecc--CccccCCCC---CCHHH-HHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---C
Confidence 344477899999998765 345678887 22222 222334444 455667998 566788899998864 9
Q ss_pred CCCChH
Q 009780 186 GFLSPR 191 (526)
Q Consensus 186 gw~~~~ 191 (526)
+..||+
T Consensus 151 A~TnPd 156 (434)
T TIGR02630 151 AATSPD 156 (434)
T ss_pred cCCCCC
Confidence 999874
No 147
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.92 E-value=1.6e+02 Score=31.88 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=62.3
Q ss_pred hchHHHHHHHHHcCCCeEEeec-cc------cccccCCCC-CCCC-ChHHHHHHHHHHHHHHHCCCeEEEEc--------
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSI-SW------SRLLPNGKL-SGGV-NNKGISFYNNLINELLSNGLQPFVTI-------- 171 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si-~W------sri~P~~~~-~g~~-n~~gl~~y~~~i~~l~~~gI~p~vtL-------- 171 (526)
.+..+-++.++.||+|++=+.+ .+ |.+.|.... .|.. =..|-+-...+|++.+++||+++.=.
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~ 143 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPP 143 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCC
Confidence 3457779999999999988876 22 222232210 0100 01233558899999999999977511
Q ss_pred ---cCCCCchhhHhh--------cCC-----CCC---hHHHHHHHHHHHHHHHHhc
Q 009780 172 ---FHWDLPQALEDD--------YGG-----FLS---PRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 172 ---~h~~~P~~l~~~--------~gg-----w~~---~~~~~~f~~ya~~~~~~~g 208 (526)
.|-..|.|+..+ .+| |++ |+..+...+-+..++++|.
T Consensus 144 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 144 TSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred CChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 233334444333 344 444 5888888899999999994
No 148
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=27.46 E-value=69 Score=39.54 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=39.3
Q ss_pred hhchH--HHHHHHHHcCCCeEEeeccccc------------------------cccCCCCCCCCChHHHHHHHHHHHHHH
Q 009780 108 YHRYK--EDVKIMKEMNLDAFRFSISWSR------------------------LLPNGKLSGGVNNKGISFYNNLINELL 161 (526)
Q Consensus 108 yh~y~--eDi~lm~~lG~~~~R~si~Wsr------------------------i~P~~~~~g~~n~~gl~~y~~~i~~l~ 161 (526)
|.... +.|.-+|+||++++=+.=-..- +.|.- |. ..++=+++||++|+
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~y---g~---~~~~efk~lV~~~H 257 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRL---AP---GGEEEFAQAIKEAQ 257 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhh---cc---CcHHHHHHHHHHHH
Confidence 44444 6688999999999876542221 11111 10 14566899999999
Q ss_pred HCCCeEEEEc
Q 009780 162 SNGLQPFVTI 171 (526)
Q Consensus 162 ~~gI~p~vtL 171 (526)
++||++|+.+
T Consensus 258 ~~GI~VILDv 267 (1221)
T PRK14510 258 SAGIAVILDV 267 (1221)
T ss_pred HCCCEEEEEE
Confidence 9999999974
No 149
>PLN02960 alpha-amylase
Probab=27.42 E-value=1.1e+02 Score=36.19 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=59.9
Q ss_pred hhhchHHH-HHHHHHcCCCeEEeecc--------cc-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 107 FYHRYKED-VKIMKEMNLDAFRFSIS--------WS-------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 107 ~yh~y~eD-i~lm~~lG~~~~R~si~--------Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
-|.-..+. |.-+++||++++-+.=- |. .+.|.- |. .+=++.+|++|+++||.+|+.
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y---Gt-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF---GT-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 45555544 89999999999876531 21 111111 22 344899999999999999998
Q ss_pred c--cCCCC--c--h---------hhHh--h-----cC----CCCChHHHHHHHHHHHHHHHHhc
Q 009780 171 I--FHWDL--P--Q---------ALED--D-----YG----GFLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 171 L--~h~~~--P--~---------~l~~--~-----~g----gw~~~~~~~~f~~ya~~~~~~~g 208 (526)
+ .|+.. + . ++.. . .| ...++++++.+.+=|+.-+++|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6 34322 1 1 1110 0 01 12357888888999999988885
No 150
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.78 E-value=4.1e+02 Score=28.36 Aligned_cols=91 Identities=20% Similarity=0.165 Sum_probs=52.1
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-EccCCCCchhhHhhcCCCC
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV-TIFHWDLPQALEDDYGGFL 188 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v-tL~h~~~P~~l~~~~ggw~ 188 (526)
...+-++.++++|++.+=+ ....+.|-+ -...... ...+++-+.|.++||++.. |..-+..|.+. .|++.
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~---~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~la 103 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG---APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGFT 103 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCCC
Confidence 4578899999999998854 334455554 1111111 3467888889999999554 44333334332 26777
Q ss_pred Ch--HHHHHHHHHHH---HHHHHhcC
Q 009780 189 SP--RIVADFQDYAE---LCFKEFGD 209 (526)
Q Consensus 189 ~~--~~~~~f~~ya~---~~~~~~g~ 209 (526)
++ ++++.-.++.+ .++..+|-
T Consensus 104 s~d~~vR~~ai~~~kraId~A~eLGa 129 (382)
T TIGR02631 104 SNDRSVRRYALRKVLRNMDLGAELGA 129 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 75 33333233332 23555654
No 151
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=26.43 E-value=2.9e+02 Score=31.23 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHh
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQ-PFVTIFHWDLPQALED 182 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~h~~~P~~l~~ 182 (526)
-+.|..+.++|...+|+.+ .+.+..+-..++.+.|++.|+. |+|.=.||+.-..+..
T Consensus 48 v~Qi~~L~~aGceiVRvtv--------------p~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a 105 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTV--------------QGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV 105 (606)
T ss_pred HHHHHHHHHcCCCEEEEcC--------------CCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH
Confidence 5678999999999999975 3556668889999999999998 8999999998877653
No 152
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.13 E-value=3.7e+02 Score=27.47 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=67.7
Q ss_pred hHHHHHHHHHcCCC--eEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCC---chh------
Q 009780 111 YKEDVKIMKEMNLD--AFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDL---PQA------ 179 (526)
Q Consensus 111 y~eDi~lm~~lG~~--~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~---P~~------ 179 (526)
..+-++.+++.|+. .+=+.+.|..-. ++ =.+|.+-..--.+|++.|+++|+++++.+.=+-. +..
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~--f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~ 107 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GD--FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEK 107 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--Cc--cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhC
Confidence 46667889999965 666666774321 10 1334333333578999999999998886542211 111
Q ss_pred ---hHhhcC----------------CCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009780 180 ---LEDDYG----------------GFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPH 221 (526)
Q Consensus 180 ---l~~~~g----------------gw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 221 (526)
+.++-| -+.||+.++.|.+..+.+....|= --.|+=+|||.
T Consensus 108 g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 108 GYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 111101 167999999999999888877753 34677789996
No 153
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.09 E-value=2.1e+02 Score=28.60 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=42.8
Q ss_pred HHHHHHHHHcC----CCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 112 KEDVKIMKEMN----LDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 112 ~eDi~lm~~lG----~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.+|+++..+.| ++.+|+.++.|.+.-.... +.=-.+.++-..+++..++++|+++.++.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 78999999999 9999998866655322110 22223467778899999999999877554
No 154
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.07 E-value=70 Score=28.80 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCeEEEEccCCCCc---hhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCc-ccEEEeccCCc
Q 009780 153 YNNLINELLSNGLQPFVTIFHWDLP---QALEDDYGGFLSPRIVADFQDYAELCFKEFGDR-VKHWITLNEPH 221 (526)
Q Consensus 153 y~~~i~~l~~~gI~p~vtL~h~~~P---~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~-V~~W~t~NEp~ 221 (526)
+.-+++.|++.|++|++.+ +| .|.. |-| ++++.++.|.+=.+.+++++|=. +++.-=-+||.
T Consensus 38 l~l~L~~~k~~g~~~lfVi----~PvNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~~y 103 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVI----QPVNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYEPY 103 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE--------HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--EEE-TTGTTSTT
T ss_pred HHHHHHHHHHcCCceEEEe----cCCcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCCc
Confidence 5789999999999999988 55 4442 234 46777888888888888888753 23333334443
No 155
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.98 E-value=4.2e+02 Score=25.64 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=68.5
Q ss_pred HHHHHH----HHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCC--chhhHhh--
Q 009780 112 KEDVKI----MKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDL--PQALEDD-- 183 (526)
Q Consensus 112 ~eDi~l----m~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~--P~~l~~~-- 183 (526)
++|++. +++.|++.+|+.++=|........ +.--.+.++-..++++.+++.|+++.+++-+.+. |..+.+-
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNL-NKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHT-CSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 455554 556999999999966554333211 3333567788899999999999999998877543 3333221
Q ss_pred --------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 184 --------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 184 --------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
.-|...|. ...++++.+-+++++..-.++.-|-..+
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~---~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPE---DVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HH---HHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred HHHHcCCeEEEeeCccCCcCHH---HHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 13455544 4556777777788766666777776543
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.94 E-value=2.3e+02 Score=29.67 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChH
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPR 191 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 191 (526)
.+|+++..+.|++.+|+...+++. +--.+.|+.++++|+++.+++.... . .
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a~-----------~---~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMSH-----------M---A 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEecc-----------C---C
Confidence 589999999999999998855432 2247889999999999999886431 1 1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 009780 192 IVADFQDYAELCFKEFGD 209 (526)
Q Consensus 192 ~~~~f~~ya~~~~~~~g~ 209 (526)
.++.+.+.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 2345666676654 4653
No 157
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.92 E-value=1.7e+02 Score=28.58 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 009780 153 YNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRV 211 (526)
Q Consensus 153 y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V 211 (526)
.+..++.+++.|+.-+=--.+|... .....++-.+....+.+.+.++.| ..+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~--~~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAY--QEPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTST--STTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHh--cCCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 5788999999999966555555221 111112335667777777777776 3345444
No 158
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.75 E-value=5.6e+02 Score=25.43 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=38.1
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPF 168 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~ 168 (526)
-|+|-+++++++|++.+=+++.-....|.. -.++. .....+-+.+.++||++.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc---cCCCH---HHHHHHHHHHHHcCCCce
Confidence 478999999999999999976543322222 12333 456788889999999964
No 159
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.58 E-value=2.8e+02 Score=29.01 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChHHH
Q 009780 114 DVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIV 193 (526)
Q Consensus 114 Di~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~ 193 (526)
+.+.+|++|.++..|=+=|. |++ +..+|..=.++.+++.++|++++|-=++=+..++.+. .+. ++ .++.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~-~~---~~ya 179 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN-GS---VEFA 179 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC-Cc---HHHH
Confidence 47889999999999998774 443 2458888889999999999999999888888876654 122 22 2222
Q ss_pred HHHHHHHHHHHHHhcC---cccEEEe
Q 009780 194 ADFQDYAELCFKEFGD---RVKHWIT 216 (526)
Q Consensus 194 ~~f~~ya~~~~~~~g~---~V~~W~t 216 (526)
+.--+.+-..++.|++ .|+.|=+
T Consensus 180 k~kP~~V~~a~kefs~~~~gvDVlKv 205 (325)
T TIGR01232 180 KVKPRKVNEAMKLFSEPRFNVDVLKV 205 (325)
T ss_pred HhChHHHHHHHHHhccCCCCCcEEEE
Confidence 2233444455666665 3555543
No 160
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=25.49 E-value=4.3e+02 Score=28.05 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHh
Q 009780 112 KEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQ-PFVTIFHWDLPQALED 182 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~h~~~P~~l~~ 182 (526)
-+.|..+.++|...+|+++ +|.+..+-..++.+.|++.|.. |+|.=.|||.-..|..
T Consensus 34 v~QI~~L~~aGceivRvav--------------p~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a 91 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAV--------------PDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA 91 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE---------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC--------------CCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH
Confidence 4678999999999999987 4567778889999999999998 9999999998877764
No 161
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=25.18 E-value=1.1e+02 Score=31.49 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCeEE-eec-cc-----cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 111 YKEDVKIMKEMNLDAFR-FSI-SW-----SRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R-~si-~W-----sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.+|.++.||++|++.+- .+. .- .++.|+. .+. +-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~-----~t~---~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK-----LSS---DEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC-----CCH---HHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999884 233 12 1233433 333 556799999999999987664
No 162
>PRK06256 biotin synthase; Validated
Probab=25.16 E-value=1.1e+02 Score=31.54 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCCeEEeec-cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 110 RYKEDVKIMKEMNLDAFRFSI-SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si-~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
.-+|.++.|+++|++.+-+++ +=.++.+.- ...-++ +..-+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i--~~~~t~---~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNV--VTTHTY---EDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhc--CCCCCH---HHHHHHHHHHHHcCCeeccC
Confidence 447889999999999998877 523344442 122233 56778999999999985543
No 163
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.89 E-value=2e+02 Score=30.02 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=44.7
Q ss_pred chHHHHHHHHHcCCCeEEeec----cc-------cccccCCC-------CCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 110 RYKEDVKIMKEMNLDAFRFSI----SW-------SRLLPNGK-------LSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si----~W-------sri~P~~~-------~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
..++-|+.|+..++|.+-+-+ +| +.+-..+. ..|.+.. +-++++++.++++||++|.-+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 467889999999999877666 23 33322110 0134566 557999999999999977755
Q ss_pred cCCCCchhh
Q 009780 172 FHWDLPQAL 180 (526)
Q Consensus 172 ~h~~~P~~l 180 (526)
|+|...
T Consensus 96 ---D~PGH~ 101 (329)
T cd06568 96 ---DMPGHT 101 (329)
T ss_pred ---CCcHHH
Confidence 677654
No 164
>PTZ00445 p36-lilke protein; Provisional
Probab=24.75 E-value=1e+02 Score=30.31 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChH---------HHHHHHHHHHHHHH
Q 009780 151 SFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPR---------IVADFQDYAELCFK 205 (526)
Q Consensus 151 ~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~---------~~~~f~~ya~~~~~ 205 (526)
+--+.+++.|++.||+.+++=+--++ ...+ -|||.++. ....|......+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTl-I~~H--sgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTM-ITKH--SGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhh-hhhh--cccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 34578899999999998875322221 1112 28999997 45556665555443
No 165
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=24.73 E-value=91 Score=36.05 Aligned_cols=22 Identities=9% Similarity=0.462 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEc
Q 009780 150 ISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 150 l~~y~~~i~~l~~~gI~p~vtL 171 (526)
++-+++||++|+++||++|+.+
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4568999999999999999975
No 166
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=24.64 E-value=40 Score=27.05 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=16.1
Q ss_pred ccchhhchH--HHHHHHHHcCC
Q 009780 104 AVDFYHRYK--EDVKIMKEMNL 123 (526)
Q Consensus 104 a~d~yh~y~--eDi~lm~~lG~ 123 (526)
-.|||..|+ +|++.|+++|+
T Consensus 45 YadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 45 YADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHccChHHHHHHHHHcCC
Confidence 357887764 78999999996
No 167
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.52 E-value=1.8e+02 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 009780 115 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI 171 (526)
Q Consensus 115 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 171 (526)
.++++++|++.+=++-|=.| +.+. | -.+-+..++++||+|++|.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 48999999999888887666 3332 1 3667889999999999999
No 168
>PTZ00445 p36-lilke protein; Provisional
Probab=24.51 E-value=1.4e+02 Score=29.29 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHcCCCeEEeecccccccc-CCCCCCCCChH---------HHHHHHHHHHHHHHCCCeEEEEccC
Q 009780 115 VKIMKEMNLDAFRFSISWSRLLP-NGKLSGGVNNK---------GISFYNNLINELLSNGLQPFVTIFH 173 (526)
Q Consensus 115 i~lm~~lG~~~~R~si~Wsri~P-~~~~~g~~n~~---------gl~~y~~~i~~l~~~gI~p~vtL~h 173 (526)
++++++.|++++=+.+.=.-|-- .| |.++.. +-.-...++.+|+++||..+|.++-
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG---GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 68899999999988776554431 12 333332 3345788999999999998887753
No 169
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.51 E-value=3.7e+02 Score=26.66 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=38.9
Q ss_pred hchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHC-CCeEEE
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSN-GLQPFV 169 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~-gI~p~v 169 (526)
.-+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5679999999999999998888665544433 1234 4567777888888 666444
No 170
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=24.30 E-value=1.6e+02 Score=37.47 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=44.4
Q ss_pred hhchHHHHHHHHHcCCCeEEeecccc---------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc-
Q 009780 108 YHRYKEDVKIMKEMNLDAFRFSISWS---------------RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTI- 171 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~~~R~si~Ws---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL- 171 (526)
.....+-+.-+++||++++=+|=-+. +|.|.- | +.+=+++++++|+++||++|+.+
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 45577888999999999986664443 344443 2 34557999999999999999975
Q ss_pred -cCCC
Q 009780 172 -FHWD 175 (526)
Q Consensus 172 -~h~~ 175 (526)
.|..
T Consensus 829 ~NH~~ 833 (1693)
T PRK14507 829 PNHMG 833 (1693)
T ss_pred ccccC
Confidence 5654
No 171
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.20 E-value=1.2e+02 Score=30.16 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=41.2
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV 169 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 169 (526)
....+++.-|++++.+|.+.+++.-......+.. ...-...++.++.+.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4566778889999999999999864322111111 111134567788999999999997544
No 172
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=24.14 E-value=2.4e+02 Score=28.88 Aligned_cols=65 Identities=15% Similarity=0.391 Sum_probs=46.0
Q ss_pred chHHHHHHHHHcCCCeEEeecc----ccc---cccCC----------CCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcc
Q 009780 110 RYKEDVKIMKEMNLDAFRFSIS----WSR---LLPNG----------KLSGGVNNKGISFYNNLINELLSNGLQPFVTIF 172 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~----Wsr---i~P~~----------~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 172 (526)
..++-|+.|+..++|.+.+-++ |.- ..|+- ...|.+.. +-.+++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec-
Confidence 4677799999999999888775 522 12321 01246677 567999999999999977765
Q ss_pred CCCCchhh
Q 009780 173 HWDLPQAL 180 (526)
Q Consensus 173 h~~~P~~l 180 (526)
|+|...
T Consensus 93 --D~PGH~ 98 (303)
T cd02742 93 --DMPGHS 98 (303)
T ss_pred --cchHHH
Confidence 566543
No 173
>PRK01060 endonuclease IV; Provisional
Probab=23.97 E-value=3.4e+02 Score=26.95 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQP 167 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 167 (526)
+++-++.++++|++.+=+.+.-++.... +..+. +..+++-+.+.++||+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCH---HHHHHHHHHHHHcCCCC
Confidence 6888999999999999998765554432 23555 44566667788999984
No 174
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.82 E-value=2.6e+02 Score=30.37 Aligned_cols=62 Identities=11% Similarity=0.208 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCeEEeec-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWS-RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQ 178 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~ 178 (526)
+|.+++|+++|++.+.+++ +=+ .+.-.- ...-+. +-..+.++.+++.||..+..-.-+++|.
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQPF---EFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 7899999999999777777 332 122111 022233 5567889999999995333322445563
No 175
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=23.57 E-value=1.8e+02 Score=35.32 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=48.5
Q ss_pred CCcEEEeecCCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHcCCCeEEEeecccccccccC---C-----CCCCc
Q 009780 426 NPTLYITENGYDDFNNATLPLKEALKDPMRLDYFKNHLLFLRKAIKEGVNVKGYFAWSLLDNFEWY---S-----GYSVR 497 (526)
Q Consensus 426 ~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~dGv~v~GY~~WSl~Dn~EW~---~-----Gy~~R 497 (526)
..|++++|.|.+..+.. |. ++++. .++++-=.+.|=|.|.++|-=-.. + +|.--
T Consensus 505 ~kP~i~~Ey~hamgn~~-----g~---------~~~yw----~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd 566 (1021)
T PRK10340 505 PKPRILCEYAHAMGNGP-----GG---------LTEYQ----NVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGD 566 (1021)
T ss_pred CCcEEEEchHhccCCCC-----CC---------HHHHH----HHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCC
Confidence 34799999998765321 11 23333 456666789999999999941110 1 12222
Q ss_pred c------------ceEEEeCCCCccccccchHHHHHHHhc
Q 009780 498 F------------GLYFVDYQNGLKRYPKHSAIWFKTFLK 525 (526)
Q Consensus 498 f------------GL~~VD~~~~~~R~~K~S~~~y~~ii~ 525 (526)
| |||. ..|+||++++.||++.+
T Consensus 567 ~g~~p~~~~f~~~Glv~------~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 567 YGDYPNNYNFCIDGLIY------PDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCCCCcCcccceeEC------CCCCCChhHHHHHHhcc
Confidence 2 4442 35789999999999864
No 176
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=23.38 E-value=1.7e+02 Score=30.16 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHHHHHCCCe-EEE----------------EccCCCCchhhHhhcCCCCCh-H-HHHHHHHHHHHHHH
Q 009780 145 VNNKGISFYNNLINELLSNGLQ-PFV----------------TIFHWDLPQALEDDYGGFLSP-R-IVADFQDYAELCFK 205 (526)
Q Consensus 145 ~n~~gl~~y~~~i~~l~~~gI~-p~v----------------tL~h~~~P~~l~~~~ggw~~~-~-~~~~f~~ya~~~~~ 205 (526)
||. +-|.++++.+++.||+ |++ .+++-.+|.|+.++.-...+. + ..+.=.+||....+
T Consensus 186 Fd~---~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~ 262 (296)
T PRK09432 186 FDV---ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVK 262 (296)
T ss_pred cch---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 555 6678999999999966 333 346889999999887666432 2 23334556666666
Q ss_pred HhcCc-c--cEEEeccCCccc
Q 009780 206 EFGDR-V--KHWITLNEPHSY 223 (526)
Q Consensus 206 ~~g~~-V--~~W~t~NEp~~~ 223 (526)
.+-+. | .+..|+|-+...
T Consensus 263 ~L~~~gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 263 ILSREGVKDFHFYTLNRAELT 283 (296)
T ss_pred HHHHCCCCEEEEecCCChHHH
Confidence 54332 2 233357766543
No 177
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=22.98 E-value=2.7e+02 Score=29.44 Aligned_cols=62 Identities=21% Similarity=0.431 Sum_probs=45.1
Q ss_pred hhchHHHHHHHHHcCCC-------eEE-------eeccccccccCCCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 108 YHRYKEDVKIMKEMNLD-------AFR-------FSISWSRLLPNGKLSGGVN-NKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 108 yh~y~eDi~lm~~lG~~-------~~R-------~si~Wsri~P~~~~~g~~n-~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
...-.|-.+.+|+++-+ ..| .+..|.-+.-++.++|.+| .+||...++++-++.+.|+. ++|
T Consensus 67 ~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp-~at 143 (353)
T PRK12755 67 PEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLP-LAT 143 (353)
T ss_pred HHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCC-EEE
Confidence 33445555666666554 455 7788888876666678888 88999999999889999985 444
No 178
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.97 E-value=6.2e+02 Score=26.03 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcCCCeEEeec--cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCC---chhhH--hh
Q 009780 111 YKEDVKIMKEMNLDAFRFSI--SWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDL---PQALE--DD 183 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~---P~~l~--~~ 183 (526)
..+-++.+++.|+..==+-| .|....-.....=.+|.+-..--.+||+.|+++|++.++.+.-+-. |..-+ ++
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 35556677777765443333 3433210000001222222222478999999999999886653322 22110 00
Q ss_pred -----------------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 184 -----------------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 184 -----------------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
+-.+.||+.++.|.+..+..+...|- --.|+=.|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 01157999999998877655554432 246777899964
No 179
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=22.74 E-value=4.2e+02 Score=24.08 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCeEEeecc-ccc-cccCCCCCCCCChHHHHHHHHHHHHHHHCC-CeEEEE
Q 009780 112 KEDVKIMKEMNLDAFRFSIS-WSR-LLPNGKLSGGVNNKGISFYNNLINELLSNG-LQPFVT 170 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si~-Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~g-I~p~vt 170 (526)
++.++.|+++|++.+.+|+. ++. +...- ....+. +.+.+.|+.++++| +.+.+.
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~~--~~~~~~---~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKAI--NRGHTV---EDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHHh--cCCCCH---HHHHHHHHHHHHhCCcceEEe
Confidence 78899999999999999994 543 22111 012233 77889999999999 654443
No 180
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.42 E-value=66 Score=29.91 Aligned_cols=63 Identities=8% Similarity=-0.001 Sum_probs=42.0
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV 169 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 169 (526)
......++-+++++.+|++.+++...+-...+.... ..--...++.++.+.+.+.++|+++.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDT-EENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSH-HHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcccccccCCCH-HHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 345678899999999999999999764111111100 011122456788888899999988555
No 181
>PRK10426 alpha-glucosidase; Provisional
Probab=21.89 E-value=6.7e+02 Score=28.77 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=64.1
Q ss_pred chHHHHHHHHHcCCCeEEeec-cccccccC--CCCCC----CCChHHHHHHHHHHHHHHHCCCeEEEEccCC---CCchh
Q 009780 110 RYKEDVKIMKEMNLDAFRFSI-SWSRLLPN--GKLSG----GVNNKGISFYNNLINELLSNGLQPFVTIFHW---DLPQA 179 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si-~Wsri~P~--~~~~g----~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---~~P~~ 179 (526)
...+-++.+++.||..==+-| .|...... +. .. .+|.+-..-.++||+.|++.|++.++-+.-+ +.|.+
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~-~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y 300 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK-RLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLC 300 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccc-cccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHH
Confidence 355667889999987655544 67643221 10 00 2233222224789999999999977765422 22333
Q ss_pred hHhh---------cC---------------CCCChHHHHHHHHHHHHHHHHhcCcccEE-EeccCC
Q 009780 180 LEDD---------YG---------------GFLSPRIVADFQDYAELCFKEFGDRVKHW-ITLNEP 220 (526)
Q Consensus 180 l~~~---------~g---------------gw~~~~~~~~f~~ya~~~~~~~g~~V~~W-~t~NEp 220 (526)
-+-. .| -+.||+.+++|.+..+..+...| |+.| .=+||+
T Consensus 301 ~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 301 EEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 2111 01 17799999999887765555555 6666 667884
No 182
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=21.84 E-value=2.3e+02 Score=28.45 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=33.0
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHH
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINEL 160 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l 160 (526)
+-.....+||++++++|++.+=|++- -| +|.+|.+ ...++++.+
T Consensus 70 ~E~~~M~~di~~~~~~GadGvV~G~L----~~----dg~vD~~---~~~~Li~~a 113 (248)
T PRK11572 70 GEFAAMLEDIATVRELGFPGLVTGVL----DV----DGHVDMP---RMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeE----CC----CCCcCHH---HHHHHHHHh
Confidence 34567899999999999999999874 12 2789994 446666665
No 183
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.81 E-value=4e+02 Score=27.84 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCeEEeec-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEE-EEccCCCCc
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWS-RLLPNGKLSGG-VNNKGISFYNNLINELLSNGLQPF-VTIFHWDLP 177 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P 177 (526)
++.+++|+++|+|.+.+++ +-+ .+...- |+ .+. +-..+.++.+++.|+..+ +.| =+.+|
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~---~~~~~ai~~lr~~g~~~v~iDl-i~GlP 160 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQ---KQIIKAIENAKKAGFENISIDL-IYDTP 160 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCEEEEEe-ecCCC
Confidence 6899999999999888887 554 333322 32 333 557788999999999855 444 34566
No 184
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.58 E-value=1.7e+02 Score=29.22 Aligned_cols=62 Identities=2% Similarity=0.004 Sum_probs=40.3
Q ss_pred chhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009780 106 DFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT 170 (526)
Q Consensus 106 d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 170 (526)
..-.++++=+++++++|.+.+++.- .+..+.+. ....-...++.++++.+.+.++||+..+=
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 91 QGLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3455678889999999999998852 11111110 01111235677788999999999986663
No 185
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.54 E-value=3.5e+02 Score=26.68 Aligned_cols=52 Identities=4% Similarity=-0.031 Sum_probs=34.3
Q ss_pred chHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009780 110 RYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV 169 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 169 (526)
-+++.+++++++|++.+=+........+.. .+. ..-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~-----~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPD-----LKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccc-----cCc---hHHHHHHHHHHHcCCeEEE
Confidence 479999999999999988743222222111 222 2346677788899998643
No 186
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=21.34 E-value=2.3e+02 Score=30.05 Aligned_cols=85 Identities=12% Similarity=0.219 Sum_probs=54.1
Q ss_pred CcccchhhchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCC--C----hHH-HHHHHHHHHHHHHCCCeEEEEccCC
Q 009780 102 DIAVDFYHRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGV--N----NKG-ISFYNNLINELLSNGLQPFVTIFHW 174 (526)
Q Consensus 102 ~~a~d~yh~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~--n----~~g-l~~y~~~i~~l~~~gI~p~vtL~h~ 174 (526)
=+|.=||+ |+-=++-++. +..+|+. + |++ + ... -+....+++.++++||..=+..+|-
T Consensus 77 lVADIHFd-~~lAl~a~~~--v~kiRIN---------P---GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~G 141 (359)
T PF04551_consen 77 LVADIHFD-YRLALEAIEA--VDKIRIN---------P---GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSG 141 (359)
T ss_dssp EEEEESTT-CHHHHHHHHC---SEEEE----------T---TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGG
T ss_pred eeeecCCC-HHHHHHHHHH--hCeEEEC---------C---CcccccccccccchHHHHHHHHHHHHHCCCCEEEecccc
Confidence 34555665 4544444444 8888874 3 555 0 011 2678999999999999999999999
Q ss_pred CCchhhHhhcCCCCChHHHHHHHHHHHH
Q 009780 175 DLPQALEDDYGGFLSPRIVADFQDYAEL 202 (526)
Q Consensus 175 ~~P~~l~~~~ggw~~~~~~~~f~~ya~~ 202 (526)
.++.-+..+| |-.....++--.++++.
T Consensus 142 SL~~~~~~ky-~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 142 SLEKDILEKY-GPTPEAMVESALEHVRI 168 (359)
T ss_dssp GS-HHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 9999999887 33334445555555553
No 187
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=21.27 E-value=1.1e+02 Score=33.01 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCeEEeec------cccccccCCCCCCCC--ChHHHHHHHHHHHHHHHCCCeEEEEc--cCC
Q 009780 113 EDVKIMKEMNLDAFRFSI------SWSRLLPNGKLSGGV--NNKGISFYNNLINELLSNGLQPFVTI--FHW 174 (526)
Q Consensus 113 eDi~lm~~lG~~~~R~si------~Wsri~P~~~~~g~~--n~~gl~~y~~~i~~l~~~gI~p~vtL--~h~ 174 (526)
+-+..+++||+++.=++= ++.+--...- -.+ ..-.++-.++++++++++||+.++.+ .|-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy--~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY--TKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch--hhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 668889999999984332 2222111110 111 23345678999999999999999986 563
No 188
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=20.71 E-value=3.6e+02 Score=31.73 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=60.0
Q ss_pred cCCCeEEeecc-ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccC---CCCchh--hHhh-----------
Q 009780 121 MNLDAFRFSIS-WSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFH---WDLPQA--LEDD----------- 183 (526)
Q Consensus 121 lG~~~~R~si~-Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h---~~~P~~--l~~~----------- 183 (526)
+=++.+++.+. |.+ .-+ .=.+|..-.---+.||+.|++.||+.++-+.. -+.|.. +..+
T Consensus 294 IP~d~~~lD~~~~~~--~~~--~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG--DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred CcceEEEEeehhhhc--ccc--ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 45678999995 876 111 01223222222358999999999998887642 233322 1111
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCcccccc
Q 009780 184 -----------YGGFLSPRIVADFQDYAELCFKEFGD--RVKHWITLNEPHSYSSN 226 (526)
Q Consensus 184 -----------~ggw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~~~~~ 226 (526)
+--+.||+.+++|.+. ..+.+-| -.-+|.=+|||.+....
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~~---~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWASD---KKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHHH---HHhHHHhcCccEEEccCCCCcccccc
Confidence 0127799999999973 3333333 24678889999977543
No 189
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.60 E-value=4.9e+02 Score=30.18 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHhh--------
Q 009780 113 EDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQ-PFVTIFHWDLPQALEDD-------- 183 (526)
Q Consensus 113 eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~h~~~P~~l~~~-------- 183 (526)
+.+..+.++|...+|+.+ .+.+..+-..++-+.|++.|+. |+|.=.||+.-..+...
T Consensus 114 ~Qi~~l~~aGceiVRvtv--------------~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~vdkiRI 179 (733)
T PLN02925 114 DQVMRIADKGADIVRITV--------------QGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAECFDKIRV 179 (733)
T ss_pred HHHHHHHHcCCCEEEEcC--------------CCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHHHHhcCCeEE
Q ss_pred -cCCCCCh-------------------HHHHHHHHHHHHHHHH
Q 009780 184 -YGGFLSP-------------------RIVADFQDYAELCFKE 206 (526)
Q Consensus 184 -~ggw~~~-------------------~~~~~f~~ya~~~~~~ 206 (526)
.|.+-++ ++.+.|...++.|-++
T Consensus 180 NPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~ 222 (733)
T PLN02925 180 NPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKY 222 (733)
T ss_pred CCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHC
No 190
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.51 E-value=3.8e+02 Score=27.47 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=45.0
Q ss_pred chHHHHHHHHHcCCCeEEeecc----ccccccCCC-CCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCchhh
Q 009780 110 RYKEDVKIMKEMNLDAFRFSIS----WSRLLPNGK-LSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQAL 180 (526)
Q Consensus 110 ~y~eDi~lm~~lG~~~~R~si~----Wsri~P~~~-~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l 180 (526)
-.++=|++|+.+|+|.+-+=++ +.. .|+-. .+|.+.. +=++++++.++++||++|.-+ +.|..+
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 3678899999999998877552 211 22210 0267777 557999999999999988766 555544
No 191
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.49 E-value=6.3e+02 Score=24.90 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFV 169 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 169 (526)
+++-++.++++|++.+=+++.=.+..+.. ..++. .....+-+.|.++||+...
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR---LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc---ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 58899999999999998876311111111 23444 4467888899999999653
No 192
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=20.31 E-value=5.6e+02 Score=29.18 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHhh--------
Q 009780 113 EDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQ-PFVTIFHWDLPQALEDD-------- 183 (526)
Q Consensus 113 eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~h~~~P~~l~~~-------- 183 (526)
+.|..+.++|...+|+.+ .+.+..+-..++.+.+++.|+. |+|.=.||+.-..+...
T Consensus 45 ~Qi~~l~~aGceiVRvtv--------------~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~kiRI 110 (611)
T PRK02048 45 AQAKRIIDAGGEYVRLTT--------------QGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRI 110 (611)
T ss_pred HHHHHHHHcCCCEEEEcC--------------CCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCCEEE
Q ss_pred -cCCCCCh-------------------HHHHHHHHHHHHHHHH
Q 009780 184 -YGGFLSP-------------------RIVADFQDYAELCFKE 206 (526)
Q Consensus 184 -~ggw~~~-------------------~~~~~f~~ya~~~~~~ 206 (526)
.|..-++ .+.+.|...++.|-++
T Consensus 111 NPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~ 153 (611)
T PRK02048 111 NPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKEN 153 (611)
T ss_pred CCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHC
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.25 E-value=3.2e+02 Score=26.84 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=39.7
Q ss_pred hchHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-ccCCCCc
Q 009780 109 HRYKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVT-IFHWDLP 177 (526)
Q Consensus 109 h~y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt-L~h~~~P 177 (526)
...++=|++++++|.+.+++...+ . |.+..+...-....+..+++.+.+.++|++..+= +.|++.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 446777899999999998764322 2 2210001111223456677788888999986553 3565544
No 194
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.15 E-value=1.9e+02 Score=31.47 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCeEEeec-cccc-cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWSR-LLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLP 177 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 177 (526)
+|.+++|+++|++.+-+++ +-+. +.-.- ....+. +.+.+.++.++++||.+.+.+.- ++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~--~K~~~~---~~~~~~i~~~~~~Gi~v~~~~Ii-GlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI--KKGLTV---EIARRFTRDCHKLGIKVHGTFIL-GLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--cCCCCH---HHHHHHHHHHHHCCCeEEEEEEE-eCC
Confidence 5678999999999888888 4432 22221 012333 56789999999999998776532 444
No 195
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=20.13 E-value=5.9e+02 Score=31.32 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=59.0
Q ss_pred hhhchHHHHHHHHHcCCCeEEeecccc--cc-----------------------------ccCCCCCCCC-Ch-HHHHHH
Q 009780 107 FYHRYKEDVKIMKEMNLDAFRFSISWS--RL-----------------------------LPNGKLSGGV-NN-KGISFY 153 (526)
Q Consensus 107 ~yh~y~eDi~lm~~lG~~~~R~si~Ws--ri-----------------------------~P~~~~~g~~-n~-~gl~~y 153 (526)
-|.-..+.|.-+|+||++++-+.=-.+ -+ -|++...... +. ..++-+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 355566779999999999987654221 11 0111000000 00 125678
Q ss_pred HHHHHHHHHCCCeEEEEc--cCCC--------CchhhHh--h-------cCC----CCChHHHHHHHHHHHHHHHHhc
Q 009780 154 NNLINELLSNGLQPFVTI--FHWD--------LPQALED--D-------YGG----FLSPRIVADFQDYAELCFKEFG 208 (526)
Q Consensus 154 ~~~i~~l~~~gI~p~vtL--~h~~--------~P~~l~~--~-------~gg----w~~~~~~~~f~~ya~~~~~~~g 208 (526)
++||++|+++||++|+.+ .|.. .|.|... . ++| -.++.+++.+.+-++.-+++|+
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999974 3421 2333211 0 011 1346667777777777777774
No 196
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.09 E-value=4.1e+02 Score=28.09 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCeEEeec-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCCC
Q 009780 112 KEDVKIMKEMNLDAFRFSI-SWS-RLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPF-VTIFHWDLPQALEDDYGGFL 188 (526)
Q Consensus 112 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~~l~~~~ggw~ 188 (526)
++.++.|+++|++.+-+++ +=+ .+.-.- ...-+. +-..+.|+.+++.|++++ +.| =+++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~~~~~G~~~v~~dl-i~Glpg---------- 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIHGP---DEAKRAAKLAQGLGLRSFNLDL-MHGLPD---------- 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC----------
Confidence 5899999999999777777 333 232221 012233 445678999999999875 444 456663
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009780 189 SPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSY 223 (526)
Q Consensus 189 ~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~ 223 (526)
++.+.+.+-.+.+.+.=-+.|..+...=||+..
T Consensus 171 --qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~ 203 (378)
T PRK05660 171 --QSLEEALDDLRQAIALNPPHLSWYQLTIEPNTL 203 (378)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeeccEeccCCc
Confidence 233445555555544333677777777777643
No 197
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.07 E-value=3.8e+02 Score=30.46 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=57.7
Q ss_pred hHHHHHHHHHcCCCeEEeeccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEccCCCCch----hhHhh---
Q 009780 111 YKEDVKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQ----ALEDD--- 183 (526)
Q Consensus 111 y~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~----~l~~~--- 183 (526)
.++|++++.+.|++.+|+..+-+.+ +-....++.++++|....+++..-..|. .+.+-
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~ 162 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV---------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKE 162 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 4678899999999999999866443 1235556777778877776664322341 11110
Q ss_pred -------------cCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009780 184 -------------YGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHS 222 (526)
Q Consensus 184 -------------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 222 (526)
..|-..|.- ..+.++.+-++++ .....++-|-..+
T Consensus 163 l~~~Gad~I~i~Dt~G~~~P~~---~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 163 LEEMGCDSICIKDMAGLLTPYA---AYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HHHcCCCEEEECCcCCCcCHHH---HHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 135555543 3555566666774 4457777777765
Done!