BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009781
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/459 (86%), Positives = 427/459 (93%)
Query: 63 NIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKH 122
NIRDEARR + FSAKYVPFNA P TESYSLDE+VYRS+SGGLLDV+HDM ALK
Sbjct: 23 NIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKR 82
Query: 123 YDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKE 182
+DGAYW+ LFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGK+
Sbjct: 83 FDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQ 142
Query: 183 FLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAY 242
FL MNDLWVKHCGISHTGSF DLGMTVLVSQVNRL++M +PV+GVGCASTGDTSAALSAY
Sbjct: 143 FLGMNDLWVKHCGISHTGSFXDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAY 202
Query: 243 CASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS 302
CASAG+PSIVFLPANKIS+AQLVQPIANGAFVLS+DTDFDGCM+LIRE+T+ELPIYLANS
Sbjct: 203 CASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANS 262
Query: 303 LNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRL 362
LNSLRLEGQKTAAIEILQQFDW+VPDWVIVPGGNLGNIYAFYKGF+MC+ELGLVDRIPR+
Sbjct: 263 LNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRM 322
Query: 363 VCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEA 422
VCAQAANANPLYL+YKSGWKDFKP+ A+TTFASAIQIGDPVSIDRAVYALK C+GIVEEA
Sbjct: 323 VCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEA 382
Query: 423 TEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSK 482
TEEELMD AQADSTGMF+CPHTGVAL+AL KLR +GVI TD+TVVVSTAHGLKFTQSK
Sbjct: 383 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 442
Query: 483 IDYHSQNIKDMACRLANPPVSVKADFGSVMDVLKKYLLS 521
IDYHS I DMACR +NPPV VKADFG+VMDVLK YL S
Sbjct: 443 IDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 481
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/459 (84%), Positives = 415/459 (90%)
Query: 63 NIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKH 122
NIRDEARR + FSAKYVPFNA P TESYSLDE+VYRS+SGGLLDV+HD ALK
Sbjct: 23 NIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDXEALKR 82
Query: 123 YDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKE 182
+DGAYW+ LFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGK+
Sbjct: 83 FDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQ 142
Query: 183 FLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAY 242
FL NDLWVKHCGISHTGSFKDLG TVLVSQVNRL++ +PV+GVGCASTGDTSAALSAY
Sbjct: 143 FLGXNDLWVKHCGISHTGSFKDLGXTVLVSQVNRLRKXKRPVVGVGCASTGDTSAALSAY 202
Query: 243 CASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS 302
CASAG+PSIVFLPANKIS AQLVQPIANGAFVLS+DTDFDGC +LIRE+T+ELPIYLANS
Sbjct: 203 CASAGIPSIVFLPANKISXAQLVQPIANGAFVLSIDTDFDGCXKLIREITAELPIYLANS 262
Query: 303 LNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRL 362
LNSLRLEGQKTAAIEILQQFDW+VPDWVIVPGGNLGNIYAFYKGF+ C+ELGLVDRIPR
Sbjct: 263 LNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRX 322
Query: 363 VCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEA 422
VCAQAANANPLYL+YKSGWKDFKP A+TTFASAIQIGDPVSIDRAVYALK C+GIVEEA
Sbjct: 323 VCAQAANANPLYLHYKSGWKDFKPXTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEA 382
Query: 423 TEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSK 482
TEEEL D AQADSTG F+CPHTGVAL+AL KLR +GVI TD+TVVVSTAHGLKFTQSK
Sbjct: 383 TEEELXDAXAQADSTGXFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 442
Query: 483 IDYHSQNIKDMACRLANPPVSVKADFGSVMDVLKKYLLS 521
IDYHS I D ACR +NPPV VKADFG+V DVLK YL S
Sbjct: 443 IDYHSNAIPDXACRFSNPPVDVKADFGAVXDVLKSYLGS 481
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 124/372 (33%), Positives = 201/372 (54%), Gaps = 29/372 (7%)
Query: 146 GVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDL 205
G+ + + LP ++ IV+ +EGN+ L A+ + +++K+ G++ TGSFKD
Sbjct: 6 GIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDR 65
Query: 206 GMTVLVSQ-VNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQL 264
GMT+ +S+ V KR V CASTG+TSA+ +AY A AG+ + V LP ++I +L
Sbjct: 66 GMTLAISKAVEAGKR------AVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKL 119
Query: 265 VQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDW 324
Q + GA VL++ FD + ++R++ P+ + NS+N R+EGQKTAA EI
Sbjct: 120 SQAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLG- 178
Query: 325 EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDF 384
E PD+ +P GN GNI A++KGF++ E G + ++PR++ QA A P+ Y
Sbjct: 179 EAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGY------- 231
Query: 385 KPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQADST-GMFVCP 443
P++ T A+AI+IG+P S A+ A + G ++ ++ E++ ST G+F P
Sbjct: 232 -PIKNPQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEP 290
Query: 444 HTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYHSQNIKDMACRLANPPVS 503
+ +++ LIKL +G + T +GLK D A ++ P++
Sbjct: 291 ASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDP------------DTAIKVCEEPIT 338
Query: 504 VKADFGSVMDVL 515
V DF V+ VL
Sbjct: 339 VPPDFDEVVKVL 350
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 182/325 (56%), Gaps = 15/325 (4%)
Query: 154 VLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQ 213
+LP + ++S EG++ L + + + L+ K+ G++ TGSFKD GMT+ VS
Sbjct: 12 LLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVS- 70
Query: 214 VNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAF 273
K + V CASTG+T+A+ +AY A AG+ +IV LPA +++ ++ Q + +GA
Sbjct: 71 ----KAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGAR 126
Query: 274 VLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVP 333
++ ++ +FD ++L +++T P+ L NS+N RLEGQKT A E++ + + P + +P
Sbjct: 127 IVQVEGNFDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELG-DAPHYHALP 185
Query: 334 GGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTF 393
GN GNI A + G++ LG R+PR++ QAA A PL L +PV T
Sbjct: 186 VGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVL--------GRPVERPETL 237
Query: 394 ASAIQIGDPVSIDRAVYALKNCDGIVEEATEEE-LMDVSAQADSTGMFVCPHTGVALSAL 452
A+AI+IG+P S AV A + G++E T+EE L A G+F P + A++ +
Sbjct: 238 ATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGV 297
Query: 453 IKLRCKGVIGKTDKTVVVSTAHGLK 477
KL +G + V+ T HGLK
Sbjct: 298 FKLLREGRLEPESTVVLTLTGHGLK 322
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 188/339 (55%), Gaps = 21/339 (6%)
Query: 141 WPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTG 200
WP GV + LP D V+ EG + L A K+ L V+ G++ TG
Sbjct: 12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE--GLNPTG 66
Query: 201 SFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKIS 260
SFKD GMT+ V+ + L + V+ CASTG+TSA+ +AY A AG+ V +P KI+
Sbjct: 67 SFKDRGMTMAVT--DALAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIA 121
Query: 261 IAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEIL 319
+ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTAA EI+
Sbjct: 122 MGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIV 181
Query: 320 QQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKS 379
PD +P GN GNI A++KG+ +LGL+D++PR++ QAA A PL L
Sbjct: 182 DVLG-TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVL---- 236
Query: 380 GWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDV-SAQADSTG 438
+PV T A+AI+IG P S AV A + G A++EE++ A G
Sbjct: 237 ----GEPVSHPETIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEG 292
Query: 439 MFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLK 477
+FV P + +++ L+K G + + V T +GLK
Sbjct: 293 VFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLK 331
>pdb|1VB3|A Chain A, Crystal Structure Of Threonine Synthase From Escherichia
Coli
Length = 428
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 147/345 (42%), Gaps = 45/345 (13%)
Query: 199 TGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALS-AYCASAGVPSIVFLPAN 257
T +FKD G + + + +KPV + A++GDT AA++ A+ V ++ P
Sbjct: 103 TLAFKDFGGRFMAQMLTHIAG-DKPVT-ILTATSGDTGAAVAHAFYGLPNVKVVILYPRG 160
Query: 258 KISIAQ--LVQPIANGAFVLSLDTDFDGCMQLIREV--TSELPIYL----ANSLNSLRLE 309
KIS Q L + +++D DFD C L+++ EL + L ANS+N RL
Sbjct: 161 KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLL 220
Query: 310 GQKTAAIEILQQFDWEVPDWVI--VPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQA 367
Q E + Q E + ++ VP GN G++ A + K LGL + R + A
Sbjct: 221 AQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGL----LAKSLGL--PVKRFIAATN 274
Query: 368 ANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVS-------IDRAVYALKNCD--GI 418
N + W P T ++A+ + P + R ++ LK +
Sbjct: 275 VNDTVPRFLHDGQW---SPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAV 331
Query: 419 VEEATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478
+E T++ + ++ G PH VA AL G G + + TAH KF
Sbjct: 332 DDETTQQTMRELK----ELGYTSEPHAAVAYRALRDQLNPGEYG-----LFLGTAHPAKF 382
Query: 479 TQSKIDYHSQNI---KDMACRLANPPVS--VKADFGSVMDVLKKY 518
+S + + K++A R P +S + ADF ++ ++ +
Sbjct: 383 KESVEAILGETLDLPKELAERADLPLLSHNLPADFAALRKLMMNH 427
>pdb|4F4F|A Chain A, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
pdb|4F4F|B Chain B, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
Length = 468
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 130/326 (39%), Gaps = 64/326 (19%)
Query: 199 TGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTS-AALSAYCASAGVPSIVFLPAN 257
T +FKD+ M +L ++ + + A++GDT AA+ A+ + P
Sbjct: 113 TLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNG 172
Query: 258 KISIAQLVQPIANG---AFVLSLDTDFDGCMQLIR------EVTSELPIYLANSLNSLRL 308
++S Q Q ++G LS++ +FD C L++ E L + NS+N R+
Sbjct: 173 RVSPVQQRQMTSSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARI 232
Query: 309 EGQK----TAAIEILQQFDWEVPDWVI---VPGGNLGNIYAFYKGFQMCKELGLVDRIPR 361
Q TAA+ + PD + VP GN G+I+A Y + K +GL I +
Sbjct: 233 MPQVVYYFTAALSL------GAPDRAVSFTVPTGNFGDIFAGY----VAKRMGL--PIEQ 280
Query: 362 LVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIG-------------DPVSIDRA 408
L+ A N + L +SG + + V T+ + IQI D ++
Sbjct: 281 LIIATNDN-DILSRTLESGAYEMRGVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGL 339
Query: 409 VYALKNCDGIV----------------EEATEEELMDVSAQADSTGMFVCPHTGVALSAL 452
+ LK G +E + + G + PH+ + + +
Sbjct: 340 MQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIGVK-V 398
Query: 453 IKLRCKGVIGKTDKTVVVSTAHGLKF 478
+ + G T VV++TAH KF
Sbjct: 399 AREKASG----TAPMVVLATAHPAKF 420
>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
Length = 514
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 199 TGSFKDLGMTVLVSQVNR-LKRMN-------KPVIGVGCASTGDT-SAALSAYCASAGVP 249
T +FKD+ + + + L+R N K I V A++GDT SAA+ V
Sbjct: 120 TYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVS 179
Query: 250 SIVFLPANKISIAQLVQPIA---NGAFVLSLDTDFDGCMQLIR------EVTSELPIYLA 300
+ P +IS Q Q LS+ FD C +++ E S+ +
Sbjct: 180 VFILYPTGRISPIQEEQXTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAV 239
Query: 301 NSLNSLRLEGQKTAAI-EILQQFDWEVPDWV--IVPGGNLGNIYAFYKGFQMCKELGLVD 357
NS+N R+ Q T Q + + V +VP GN G+I A Y K+ GL
Sbjct: 240 NSINWARILAQXTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGY----FAKKXGL-- 293
Query: 358 RIPRLVCAQAANANPLYLYYKSG 380
I +L A N + L + KSG
Sbjct: 294 PIEKLAIATNEN-DILDRFLKSG 315
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 231 STGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDF-----DGCM 285
++G+T L+ CA G I+ +P K+S ++ GA ++ T+ +G +
Sbjct: 120 TSGNTGIGLAMACAVKGYKCIIVMP-EKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLI 178
Query: 286 QLIREVTSELPIYLANSLNSLRLEGQKTA-----AIEILQQFDWEVPDWVIVPGGNLGNI 340
+ +++ E P + L+ R G A A EIL Q D +V D ++V G G I
Sbjct: 179 YVAQQLQRETPNSIV--LDQYRNAGNPLAHYDGTAAEILWQLDNKV-DMIVVSAGTAGTI 235
>pdb|2WUQ|A Chain A, Crystal Structure Of Blab Protein From Streptomyces Cacaoi
pdb|2WUQ|B Chain B, Crystal Structure Of Blab Protein From Streptomyces Cacaoi
Length = 318
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 96 YSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYW--KALFDSRVGKTTWPYGSGVWSK 150
++ D + S++G LL+++H++G ++H DG + L +S+V + P + ++
Sbjct: 244 FASDAATWSSKTGTLLNLRHEVGVVEHADGQVFAVAVLTESQVPADSQPGAEALMAQ 300
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 32/194 (16%)
Query: 140 TWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHT 199
T PY K+ + +D +A G+ N+ ER G+ L N G +H
Sbjct: 67 TVPY-------KQALANRVDGLSERAAALGSINVIRRERDGR-LLGDNVDGAGFLGAAHK 118
Query: 200 GSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKI 259
F+ G LV +GC G +A++ A AG+ SI +
Sbjct: 119 HGFEPAGKRALV---------------IGCGGVG---SAIAYALAEAGIASITLCDPSTA 160
Query: 260 SIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEIL 319
+ + + + NG L++ T F G ++ V + P+ + R E +AA+
Sbjct: 161 RMGAVCELLGNGFPGLTVSTQFSG-LEDFDLVANASPVGMGT-----RAELPLSAALLAT 214
Query: 320 QQFDWEVPDWVIVP 333
Q D V D V P
Sbjct: 215 LQPDTLVADVVTSP 228
>pdb|12E8|H Chain H, 2e8 Fab Fragment
pdb|12E8|P Chain P, 2e8 Fab Fragment
Length = 221
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 153 WVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMN-----DLWVKHCGISH---TGSFKD 204
W+ PEI + V F+G + + +LQ++ D V +C H G F
Sbjct: 50 WIDPEIGDTEYVPKFQGKATMTADTSSNTAYLQLSSLTSEDTAVYYCNAGHDYDRGRFPY 109
Query: 205 LGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG-VPSIVFLPANKISIAQ 263
G LV+ V+ K V + S T++ ++ C G P V + N S++
Sbjct: 110 WGQGTLVT-VSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 168
Query: 264 LVQ 266
V
Sbjct: 169 GVH 171
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 324 WEVPDWVIVPGGNLGNIYAF----YKGFQMCKELGL 355
W D + PGG++ N+YA Y+ + CK+ GL
Sbjct: 163 WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGL 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,756,744
Number of Sequences: 62578
Number of extensions: 661588
Number of successful extensions: 1581
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1557
Number of HSP's gapped (non-prelim): 17
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)