Query 009781
Match_columns 526
No_of_seqs 253 out of 2014
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02569 threonine synthase 100.0 4.9E-94 1.1E-98 772.4 48.3 462 59-520 22-483 (484)
2 PRK07591 threonine synthase; V 100.0 1.9E-76 4.1E-81 630.3 41.3 405 77-516 9-419 (421)
3 PRK06260 threonine synthase; V 100.0 9E-76 1.9E-80 621.7 40.8 390 88-516 5-396 (397)
4 COG0498 ThrC Threonine synthas 100.0 1.8E-76 3.8E-81 619.4 30.1 404 81-517 1-410 (411)
5 PRK08197 threonine synthase; V 100.0 8.3E-75 1.8E-79 613.7 38.1 380 86-485 7-390 (394)
6 PRK08329 threonine synthase; V 100.0 4.9E-70 1.1E-74 568.1 37.2 344 88-479 3-347 (347)
7 PRK06450 threonine synthase; V 100.0 8.9E-70 1.9E-74 563.2 36.7 331 88-478 5-337 (338)
8 PRK05638 threonine synthase; V 100.0 2.3E-69 4.9E-74 579.9 39.7 356 88-479 3-359 (442)
9 TIGR03844 cysteate_syn cysteat 100.0 6.2E-69 1.4E-73 567.1 35.8 360 88-481 4-385 (398)
10 PRK09225 threonine synthase; V 100.0 1E-64 2.2E-69 541.4 35.3 397 81-519 1-460 (462)
11 cd01560 Thr-synth_2 Threonine 100.0 1.5E-63 3.4E-68 532.6 33.1 367 82-486 1-426 (460)
12 PRK07409 threonine synthase; V 100.0 1.3E-59 2.8E-64 491.3 39.3 345 143-515 5-350 (353)
13 TIGR00260 thrC threonine synth 100.0 2.1E-60 4.5E-65 492.5 32.8 325 147-480 1-328 (328)
14 PRK06352 threonine synthase; V 100.0 1.5E-59 3.3E-64 489.9 37.5 325 144-486 3-328 (351)
15 PRK06721 threonine synthase; R 100.0 1.9E-57 4.1E-62 474.4 38.7 343 144-517 3-348 (352)
16 cd01563 Thr-synth_1 Threonine 100.0 2E-57 4.3E-62 469.4 36.3 322 147-478 1-324 (324)
17 PRK02991 D-serine dehydratase; 100.0 7.6E-53 1.6E-57 448.7 32.5 330 147-486 53-434 (441)
18 PRK06381 threonine synthase; V 100.0 1.2E-51 2.6E-56 425.6 35.7 295 168-474 13-317 (319)
19 cd06448 L-Ser-dehyd Serine deh 100.0 1.3E-51 2.8E-56 424.6 34.7 303 170-486 1-313 (316)
20 PRK06110 hypothetical protein; 100.0 4.7E-51 1E-55 421.7 33.0 300 165-486 16-316 (322)
21 TIGR02991 ectoine_eutB ectoine 100.0 1.1E-50 2.4E-55 417.8 34.0 289 168-477 17-307 (317)
22 PRK12483 threonine dehydratase 100.0 1.3E-50 2.8E-55 438.7 34.9 328 168-516 35-364 (521)
23 PRK08526 threonine dehydratase 100.0 2.4E-50 5.2E-55 426.9 33.7 327 168-517 18-346 (403)
24 PRK08206 diaminopropionate amm 100.0 3.7E-50 7.9E-55 425.5 35.1 307 167-484 41-391 (399)
25 PLN02550 threonine dehydratase 100.0 3.6E-50 7.7E-55 437.7 35.9 293 167-478 106-400 (591)
26 PLN02970 serine racemase 100.0 2.8E-50 6.1E-55 416.7 33.4 293 168-481 25-321 (328)
27 PRK08638 threonine dehydratase 100.0 2.2E-50 4.8E-55 417.8 32.1 295 168-483 25-321 (333)
28 PRK06382 threonine dehydratase 100.0 4.2E-50 9E-55 426.6 33.2 326 167-516 22-349 (406)
29 PRK07476 eutB threonine dehydr 100.0 5.8E-50 1.2E-54 413.6 32.6 292 168-481 17-311 (322)
30 PRK07048 serine/threonine dehy 100.0 5.4E-50 1.2E-54 413.7 32.3 293 167-482 21-315 (321)
31 PRK08813 threonine dehydratase 100.0 8.5E-50 1.9E-54 413.6 33.5 279 168-484 37-317 (349)
32 TIGR01747 diampropi_NH3ly diam 100.0 1.3E-49 2.8E-54 417.5 35.1 305 169-482 21-370 (376)
33 TIGR01124 ilvA_2Cterm threonin 100.0 1.1E-49 2.5E-54 431.3 34.7 328 168-516 15-344 (499)
34 PLN02565 cysteine synthase 100.0 1.1E-49 2.4E-54 410.8 32.0 292 164-482 9-306 (322)
35 PRK08198 threonine dehydratase 100.0 1.2E-49 2.7E-54 423.2 33.3 324 167-516 19-346 (404)
36 COG1171 IlvA Threonine dehydra 100.0 5.4E-50 1.2E-54 408.3 28.7 293 168-478 23-317 (347)
37 PRK09224 threonine dehydratase 100.0 1.8E-49 3.9E-54 431.2 34.5 328 168-516 18-347 (504)
38 TIGR01127 ilvA_1Cterm threonin 100.0 1.9E-49 4.1E-54 418.6 33.4 320 171-516 1-324 (380)
39 TIGR02079 THD1 threonine dehyd 100.0 1.9E-49 4E-54 421.5 33.5 332 165-519 11-347 (409)
40 PRK06815 hypothetical protein; 100.0 1.9E-49 4.1E-54 408.9 31.9 290 168-478 18-309 (317)
41 PRK10717 cysteine synthase A; 100.0 1.5E-49 3.3E-54 411.8 30.4 296 165-483 8-316 (330)
42 cd01562 Thr-dehyd Threonine de 100.0 2.5E-49 5.4E-54 405.2 31.4 287 168-476 15-303 (304)
43 PRK08246 threonine dehydratase 100.0 8.8E-49 1.9E-53 402.6 32.7 283 167-476 20-304 (310)
44 PRK08639 threonine dehydratase 100.0 4.1E-49 8.9E-54 420.6 31.2 331 167-519 22-358 (420)
45 cd06447 D-Ser-dehyd D-Serine d 100.0 9.9E-49 2.1E-53 412.6 33.5 304 164-476 46-401 (404)
46 PRK06608 threonine dehydratase 100.0 1.5E-48 3.4E-53 404.8 33.8 294 168-483 21-316 (338)
47 PRK07334 threonine dehydratase 100.0 9.5E-49 2.1E-53 416.0 32.4 292 168-484 21-314 (403)
48 cd01561 CBS_like CBS_like: Thi 100.0 1.9E-48 4.1E-53 396.8 31.7 282 169-480 1-291 (291)
49 TIGR03528 2_3_DAP_am_ly diamin 100.0 2.7E-48 5.8E-53 410.2 33.3 305 169-482 40-389 (396)
50 TIGR02035 D_Ser_am_lyase D-ser 100.0 4.5E-48 9.8E-53 410.6 34.2 305 164-477 64-422 (431)
51 TIGR01136 cysKM cysteine synth 100.0 4.9E-48 1.1E-52 395.3 32.0 286 168-481 5-296 (299)
52 PRK11761 cysM cysteine synthas 100.0 8.1E-48 1.8E-52 393.0 29.9 278 167-481 9-291 (296)
53 PLN02356 phosphateglycerate ki 100.0 1.9E-47 4.1E-52 402.9 33.4 295 168-484 51-402 (423)
54 PLN03013 cysteine synthase 100.0 6.6E-47 1.4E-51 398.9 33.4 290 164-481 117-414 (429)
55 TIGR01139 cysK cysteine syntha 100.0 2.9E-47 6.3E-52 389.4 29.8 284 167-481 4-295 (298)
56 PLN02556 cysteine synthase/L-3 100.0 1.3E-46 2.9E-51 393.8 33.6 294 162-482 51-350 (368)
57 TIGR01415 trpB_rel pyridoxal-p 100.0 1.2E-46 2.7E-51 399.3 33.0 327 145-487 46-417 (419)
58 TIGR01138 cysM cysteine syntha 100.0 1.6E-46 3.6E-51 382.4 31.2 277 168-481 6-287 (290)
59 PLN00011 cysteine synthase 100.0 4.3E-46 9.3E-51 384.8 31.3 288 166-481 13-307 (323)
60 cd00640 Trp-synth-beta_II Tryp 100.0 3.7E-45 7.9E-50 363.1 30.9 241 171-474 1-244 (244)
61 PF00291 PALP: Pyridoxal-phosp 100.0 3.1E-45 6.7E-50 374.0 27.4 292 164-473 1-306 (306)
62 cd06446 Trp-synth_B Tryptophan 100.0 1.1E-44 2.4E-49 380.1 30.0 299 166-481 30-364 (365)
63 TIGR01137 cysta_beta cystathio 100.0 1.8E-44 3.9E-49 388.9 30.5 293 168-484 9-311 (454)
64 KOG1250 Threonine/serine dehyd 100.0 1.7E-44 3.6E-49 365.1 28.0 293 169-481 65-359 (457)
65 TIGR00263 trpB tryptophan synt 100.0 1.4E-43 3.1E-48 373.8 34.2 306 163-484 43-383 (385)
66 PRK12391 tryptophan synthase s 100.0 7.5E-43 1.6E-47 371.0 36.5 325 145-486 56-425 (427)
67 PLN02618 tryptophan synthase, 100.0 3.8E-43 8.3E-48 370.1 33.6 301 169-486 65-406 (410)
68 PRK13028 tryptophan synthase s 100.0 2.1E-42 4.6E-47 364.3 33.7 302 165-486 57-397 (402)
69 PRK04346 tryptophan synthase s 100.0 2.3E-42 4.9E-47 363.6 33.0 305 166-486 54-393 (397)
70 COG0031 CysK Cysteine synthase 100.0 8.9E-43 1.9E-47 349.6 28.4 281 169-480 10-299 (300)
71 KOG1251 Serine racemase [Signa 100.0 2.8E-43 6E-48 336.3 22.2 286 170-477 25-312 (323)
72 PRK12390 1-aminocyclopropane-1 100.0 1.4E-41 3.1E-46 353.2 24.1 288 164-474 9-324 (337)
73 PRK13802 bifunctional indole-3 100.0 2E-40 4.2E-45 367.2 33.7 311 168-493 323-679 (695)
74 PRK03910 D-cysteine desulfhydr 100.0 3.1E-41 6.7E-46 349.9 23.2 290 164-476 9-320 (331)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 1.2E-40 2.6E-45 346.2 25.2 289 164-474 8-323 (337)
76 TIGR01275 ACC_deam_rel pyridox 100.0 3.2E-40 6.9E-45 339.4 24.6 284 166-476 3-302 (311)
77 PRK13803 bifunctional phosphor 100.0 1.7E-39 3.7E-44 359.9 32.0 301 169-486 270-605 (610)
78 cd06449 ACCD Aminocyclopropane 100.0 3.9E-40 8.5E-45 338.2 22.7 280 171-474 1-307 (307)
79 PRK14045 1-aminocyclopropane-1 100.0 6.9E-35 1.5E-39 302.1 24.8 282 163-474 14-314 (329)
80 KOG1252 Cystathionine beta-syn 100.0 1.7E-34 3.7E-39 288.5 19.0 285 167-481 49-347 (362)
81 KOG1481 Cysteine synthase [Ami 100.0 3.1E-32 6.8E-37 264.7 20.3 297 169-482 48-366 (391)
82 COG0133 TrpB Tryptophan syntha 99.9 4.7E-26 1E-30 225.7 22.2 303 165-486 51-390 (396)
83 KOG1395 Tryptophan synthase be 99.9 6.3E-24 1.4E-28 212.4 19.2 314 163-493 115-465 (477)
84 COG1350 Predicted alternative 99.9 3.1E-23 6.6E-28 206.1 22.3 308 167-490 75-430 (432)
85 COG3048 DsdA D-serine dehydrat 99.8 7.3E-20 1.6E-24 180.5 20.4 291 187-485 101-438 (443)
86 COG2515 Acd 1-aminocyclopropan 99.8 2.8E-19 6E-24 177.6 18.7 286 164-474 9-312 (323)
87 KOG2616 Pyridoxalphosphate-dep 99.8 1.2E-18 2.6E-23 164.6 11.6 214 249-521 2-263 (266)
88 PF14821 Thr_synth_N: Threonin 97.5 8.3E-06 1.8E-10 67.2 -2.6 55 82-143 1-61 (79)
89 PRK06266 transcription initiat 87.7 0.15 3.2E-06 48.6 -0.3 28 89-117 120-151 (178)
90 PF03808 Glyco_tran_WecB: Glyc 86.3 2.1 4.6E-05 40.3 6.7 101 236-340 13-115 (172)
91 TIGR00373 conserved hypothetic 86.1 0.2 4.3E-06 46.8 -0.4 27 89-116 112-142 (158)
92 PRK00398 rpoP DNA-directed RNA 85.5 0.61 1.3E-05 34.1 2.1 26 88-113 5-33 (46)
93 smart00531 TFIIE Transcription 79.3 0.73 1.6E-05 42.4 0.5 27 89-116 102-137 (147)
94 cd08210 RLP_RrRLP Ribulose bis 78.4 91 0.002 33.2 16.0 67 190-257 157-228 (364)
95 cd06533 Glyco_transf_WecG_TagA 76.5 9.7 0.00021 35.8 7.3 102 236-340 11-113 (171)
96 PRK12380 hydrogenase nickel in 76.1 1.3 2.8E-05 39.0 1.2 34 77-110 60-95 (113)
97 TIGR00100 hypA hydrogenase nic 75.1 1.5 3.2E-05 38.8 1.3 24 88-111 72-96 (115)
98 PF05368 NmrA: NmrA-like famil 73.1 28 0.0006 33.7 9.9 97 227-331 2-99 (233)
99 cd08205 RuBisCO_IV_RLP Ribulos 72.4 1.2E+02 0.0026 32.2 15.1 66 190-256 162-232 (367)
100 COG0052 RpsB Ribosomal protein 71.3 33 0.00071 34.4 9.7 33 269-302 62-94 (252)
101 PRK03824 hypA hydrogenase nick 68.9 2.5 5.3E-05 38.5 1.2 12 88-99 72-83 (135)
102 PF01155 HypA: Hydrogenase exp 68.3 1.1 2.3E-05 39.5 -1.2 24 88-111 72-96 (113)
103 PF14446 Prok-RING_1: Prokaryo 68.0 4.2 9.2E-05 31.0 2.1 30 81-111 1-31 (54)
104 PRK00564 hypA hydrogenase nick 67.8 2.5 5.4E-05 37.4 1.0 24 88-111 73-98 (117)
105 cd00350 rubredoxin_like Rubred 67.4 3.4 7.3E-05 28.0 1.4 23 88-110 3-26 (33)
106 PRK03681 hypA hydrogenase nick 67.2 2.7 5.9E-05 37.0 1.2 23 88-110 72-96 (114)
107 PTZ00323 NAD+ synthase; Provis 64.3 1.7E+02 0.0038 30.1 13.8 25 316-340 150-174 (294)
108 PRK07523 gluconate 5-dehydroge 63.8 98 0.0021 30.1 11.7 57 224-280 11-67 (255)
109 TIGR00696 wecB_tagA_cpsF bacte 61.9 35 0.00076 32.4 7.7 99 236-338 13-112 (177)
110 PF04127 DFP: DNA / pantothena 61.3 42 0.00092 32.1 8.2 66 224-297 20-85 (185)
111 smart00659 RPOLCX RNA polymera 56.8 9.6 0.00021 27.8 2.2 24 89-112 5-30 (44)
112 PF08541 ACP_syn_III_C: 3-Oxoa 56.4 6.2 0.00013 32.5 1.4 37 445-481 50-86 (90)
113 PRK08063 enoyl-(acyl carrier p 55.5 2E+02 0.0043 27.6 12.3 56 225-280 6-62 (250)
114 TIGR00375 conserved hypothetic 55.2 5.2 0.00011 42.6 0.9 26 87-112 241-269 (374)
115 PRK12496 hypothetical protein; 55.0 6.7 0.00015 36.9 1.5 25 88-112 129-154 (164)
116 PF00107 ADH_zinc_N: Zinc-bind 54.1 63 0.0014 27.9 7.6 29 317-345 49-77 (130)
117 PF03668 ATP_bind_2: P-loop AT 53.3 2.5E+02 0.0055 28.8 12.6 107 273-388 2-109 (284)
118 PF09845 DUF2072: Zn-ribbon co 53.1 6 0.00013 35.6 0.8 24 88-111 3-29 (131)
119 KOG3507 DNA-directed RNA polym 52.8 13 0.00029 28.7 2.5 29 77-109 15-45 (62)
120 PF08274 PhnA_Zn_Ribbon: PhnA 52.1 7.5 0.00016 26.0 0.9 23 86-108 2-26 (30)
121 COG0375 HybF Zn finger protein 50.7 7.7 0.00017 34.3 1.1 37 75-111 58-96 (115)
122 PRK03692 putative UDP-N-acetyl 50.5 53 0.0011 32.9 7.1 68 268-338 102-169 (243)
123 COG2260 Predicted Zn-ribbon RN 49.8 13 0.00027 28.8 2.0 24 88-115 7-31 (59)
124 PF08660 Alg14: Oligosaccharid 49.5 2E+02 0.0043 27.0 10.5 39 326-368 92-130 (170)
125 TIGR01206 lysW lysine biosynth 47.6 17 0.00038 27.7 2.4 27 88-114 4-35 (54)
126 PRK12828 short chain dehydroge 46.9 2.5E+02 0.0055 26.4 12.6 70 225-294 9-79 (239)
127 TIGR02098 MJ0042_CXXC MJ0042 f 46.1 17 0.00037 25.0 2.1 25 89-113 5-37 (38)
128 PF07279 DUF1442: Protein of u 45.2 1.3E+02 0.0029 29.6 8.7 51 221-272 39-94 (218)
129 PRK13394 3-hydroxybutyrate deh 45.0 77 0.0017 30.7 7.4 59 224-282 8-66 (262)
130 PF07754 DUF1610: Domain of un 44.9 18 0.0004 22.9 1.8 20 89-108 1-23 (24)
131 PF13460 NAD_binding_10: NADH( 43.6 98 0.0021 28.3 7.5 31 227-257 2-32 (183)
132 PRK12481 2-deoxy-D-gluconate 3 43.5 1.4E+02 0.003 29.2 9.0 66 224-291 9-77 (251)
133 COG1379 PHP family phosphoeste 43.5 5.9 0.00013 41.0 -0.9 30 81-111 242-275 (403)
134 cd00729 rubredoxin_SM Rubredox 43.1 14 0.00031 25.2 1.3 23 88-110 4-27 (34)
135 PRK12311 rpsB 30S ribosomal pr 42.0 3.3E+02 0.0071 28.6 11.6 33 269-302 57-89 (326)
136 PRK07109 short chain dehydroge 41.9 1E+02 0.0023 31.8 8.1 70 225-294 10-82 (334)
137 PRK00762 hypA hydrogenase nick 41.6 12 0.00027 33.4 1.0 22 88-110 72-101 (124)
138 PRK06182 short chain dehydroge 41.3 1.9E+02 0.0042 28.4 9.7 66 225-294 5-71 (273)
139 PF13719 zinc_ribbon_5: zinc-r 41.0 17 0.00038 25.2 1.4 24 89-112 5-36 (37)
140 COG3364 Zn-ribbon containing p 40.3 9 0.0002 32.9 -0.1 24 88-111 4-30 (112)
141 COG1996 RPC10 DNA-directed RNA 40.3 18 0.00039 27.0 1.5 30 80-113 4-36 (49)
142 PRK07478 short chain dehydroge 40.0 1.3E+02 0.0029 29.1 8.2 69 225-294 8-80 (254)
143 PF10571 UPF0547: Uncharacteri 40.0 19 0.00041 23.2 1.4 22 88-111 2-24 (26)
144 PRK08277 D-mannonate oxidoredu 40.0 1.4E+02 0.003 29.4 8.5 56 225-280 12-67 (278)
145 TIGR00670 asp_carb_tr aspartat 39.4 1.2E+02 0.0026 31.4 7.9 46 233-278 162-208 (301)
146 PRK12743 oxidoreductase; Provi 39.2 1.4E+02 0.003 29.1 8.3 70 225-294 4-77 (256)
147 COG1419 FlhF Flagellar GTP-bin 38.9 2.6E+02 0.0056 30.3 10.4 137 196-344 209-361 (407)
148 PF13240 zinc_ribbon_2: zinc-r 38.6 19 0.00042 22.4 1.2 21 88-110 1-22 (23)
149 PRK05557 fabG 3-ketoacyl-(acyl 38.0 3.5E+02 0.0077 25.5 12.7 57 225-281 7-64 (248)
150 PRK07097 gluconate 5-dehydroge 37.6 1.6E+02 0.0035 28.8 8.5 71 224-294 11-84 (265)
151 PRK07454 short chain dehydroge 37.3 1.5E+02 0.0033 28.3 8.1 30 225-254 8-37 (241)
152 PRK06194 hypothetical protein; 37.3 1.8E+02 0.0038 28.8 8.8 69 225-293 8-79 (287)
153 PRK12823 benD 1,6-dihydroxycyc 36.2 1.8E+02 0.0038 28.3 8.4 69 225-294 10-81 (260)
154 PRK06463 fabG 3-ketoacyl-(acyl 36.1 2.7E+02 0.0059 26.9 9.8 67 225-294 9-76 (255)
155 PRK08674 bifunctional phosphog 35.7 4.7E+02 0.01 27.1 11.9 50 225-279 81-133 (337)
156 TIGR00686 phnA alkylphosphonat 35.5 24 0.00052 30.8 1.7 25 87-111 3-29 (109)
157 PRK08993 2-deoxy-D-gluconate 3 35.4 2.6E+02 0.0057 27.1 9.5 55 224-280 11-65 (253)
158 COG4566 TtrR Response regulato 34.9 75 0.0016 30.7 5.1 93 418-516 6-121 (202)
159 PRK09072 short chain dehydroge 34.8 4.3E+02 0.0094 25.6 11.4 30 225-254 7-36 (263)
160 PRK08628 short chain dehydroge 34.5 2.6E+02 0.0057 27.0 9.3 68 225-293 9-79 (258)
161 TIGR01064 pyruv_kin pyruvate k 34.0 2.6E+02 0.0056 30.9 9.9 49 225-278 375-424 (473)
162 PRK07035 short chain dehydroge 33.9 2.1E+02 0.0046 27.6 8.5 31 225-255 10-40 (252)
163 PF00106 adh_short: short chai 33.9 1.8E+02 0.0039 25.9 7.5 68 225-293 2-76 (167)
164 PRK07814 short chain dehydroge 33.6 4.4E+02 0.0096 25.6 10.9 30 225-254 12-41 (263)
165 PRK08643 acetoin reductase; Va 33.5 2.1E+02 0.0045 27.7 8.4 68 225-293 4-75 (256)
166 PRK05867 short chain dehydroge 33.5 2E+02 0.0044 27.8 8.3 30 225-254 11-40 (253)
167 PRK06128 oxidoreductase; Provi 33.1 2E+02 0.0043 29.0 8.4 70 225-294 57-131 (300)
168 PRK13656 trans-2-enoyl-CoA red 32.4 4.3E+02 0.0093 28.5 10.9 54 195-254 14-73 (398)
169 KOG1201 Hydroxysteroid 17-beta 32.1 3.3E+02 0.0072 28.2 9.6 73 224-296 39-113 (300)
170 PF00764 Arginosuc_synth: Argi 32.1 5.4E+02 0.012 27.7 11.6 55 227-281 1-61 (388)
171 COG2216 KdpB High-affinity K+ 32.1 50 0.0011 36.7 3.8 92 167-280 424-517 (681)
172 PRK06483 dihydromonapterin red 32.0 3.2E+02 0.007 26.0 9.4 63 225-290 4-67 (236)
173 TIGR03325 BphB_TodD cis-2,3-di 31.8 3.4E+02 0.0074 26.4 9.7 30 224-253 6-35 (262)
174 PRK07666 fabG 3-ketoacyl-(acyl 31.7 2.5E+02 0.0054 26.8 8.6 30 225-254 9-38 (239)
175 TIGR02415 23BDH acetoin reduct 31.5 2.3E+02 0.0049 27.3 8.3 70 225-294 2-74 (254)
176 PRK07774 short chain dehydroge 31.5 3.2E+02 0.007 26.1 9.4 30 225-254 8-37 (250)
177 PRK05565 fabG 3-ketoacyl-(acyl 31.3 4.6E+02 0.0099 24.8 12.5 31 225-255 7-37 (247)
178 PRK06172 short chain dehydroge 31.2 2.2E+02 0.0048 27.4 8.2 57 224-280 8-64 (253)
179 TIGR01012 Sa_S2_E_A ribosomal 31.1 1.6E+02 0.0034 28.6 6.8 83 271-372 61-144 (196)
180 PRK08589 short chain dehydroge 31.1 2.3E+02 0.0049 28.0 8.4 69 225-294 8-79 (272)
181 PF13433 Peripla_BP_5: Peripla 30.9 1.6E+02 0.0035 31.3 7.4 82 267-356 129-215 (363)
182 PF04135 Nop10p: Nucleolar RNA 30.8 60 0.0013 24.7 3.0 23 89-115 8-31 (53)
183 PRK10220 hypothetical protein; 30.6 34 0.00073 29.9 1.9 25 87-111 4-30 (111)
184 PF08659 KR: KR domain; Inter 30.4 3.6E+02 0.0078 25.0 9.2 71 225-295 2-79 (181)
185 TIGR01832 kduD 2-deoxy-D-gluco 30.3 3.3E+02 0.0071 26.1 9.2 66 224-291 6-74 (248)
186 PRK06720 hypothetical protein; 30.1 2.9E+02 0.0063 25.7 8.4 31 225-255 18-48 (169)
187 PRK08017 oxidoreductase; Provi 29.9 3.3E+02 0.0071 26.2 9.1 63 225-291 4-67 (256)
188 PRK08217 fabG 3-ketoacyl-(acyl 29.8 2.5E+02 0.0054 26.8 8.2 30 225-254 7-36 (253)
189 PRK06079 enoyl-(acyl carrier p 29.5 2.1E+02 0.0047 27.8 7.8 30 225-254 9-40 (252)
190 PRK06139 short chain dehydroge 29.4 1.9E+02 0.0042 29.9 7.7 69 225-294 9-81 (330)
191 PRK09291 short chain dehydroge 29.4 1.5E+02 0.0032 28.7 6.5 59 225-284 4-63 (257)
192 COG1439 Predicted nucleic acid 29.3 23 0.0005 33.7 0.7 24 88-113 141-165 (177)
193 PRK12938 acetyacetyl-CoA reduc 29.3 2.6E+02 0.0056 26.8 8.2 69 225-293 5-77 (246)
194 PTZ00354 alcohol dehydrogenase 29.2 4.7E+02 0.01 26.0 10.5 48 224-275 142-189 (334)
195 PRK05876 short chain dehydroge 29.2 2.6E+02 0.0057 27.7 8.5 70 225-294 8-80 (275)
196 PRK05866 short chain dehydroge 28.9 2.4E+02 0.0052 28.4 8.2 67 225-292 42-112 (293)
197 cd00730 rubredoxin Rubredoxin; 28.9 37 0.0008 25.5 1.6 12 88-99 3-14 (50)
198 COG0279 GmhA Phosphoheptose is 28.5 5.1E+02 0.011 24.6 9.3 97 266-369 36-146 (176)
199 PLN03209 translocon at the inn 28.5 5.5E+02 0.012 29.2 11.4 32 224-255 81-112 (576)
200 PRK08085 gluconate 5-dehydroge 28.4 3.1E+02 0.0067 26.5 8.7 30 225-254 11-40 (254)
201 PRK08862 short chain dehydroge 28.4 2.7E+02 0.0058 26.9 8.2 29 225-253 7-35 (227)
202 PRK06949 short chain dehydroge 28.0 2.6E+02 0.0056 27.0 8.0 32 224-255 10-41 (258)
203 PRK08226 short chain dehydroge 27.9 3.1E+02 0.0067 26.6 8.6 69 224-293 7-78 (263)
204 PF00056 Ldh_1_N: lactate/mala 27.9 87 0.0019 28.3 4.3 124 227-364 4-141 (141)
205 PRK06181 short chain dehydroge 27.8 2.7E+02 0.0059 27.0 8.2 69 225-293 3-74 (263)
206 PF00070 Pyr_redox: Pyridine n 27.5 3.1E+02 0.0067 21.6 7.2 29 229-257 4-32 (80)
207 CHL00067 rps2 ribosomal protei 27.4 6.1E+02 0.013 25.0 11.1 32 269-301 66-97 (230)
208 PLN02192 3-ketoacyl-CoA syntha 27.3 1E+02 0.0022 34.4 5.3 64 421-487 420-483 (511)
209 PF09538 FYDLN_acid: Protein o 27.1 40 0.00086 29.5 1.7 24 89-112 12-37 (108)
210 cd01078 NAD_bind_H4MPT_DH NADP 27.0 5.3E+02 0.011 24.1 10.3 30 224-253 29-58 (194)
211 PRK07791 short chain dehydroge 26.9 3.5E+02 0.0075 27.1 8.9 72 224-295 7-90 (286)
212 PRK14138 NAD-dependent deacety 26.7 21 0.00045 35.7 -0.1 32 225-256 181-214 (244)
213 PF04122 CW_binding_2: Putativ 26.6 3.6E+02 0.0078 22.1 7.5 55 224-280 25-82 (92)
214 PRK08642 fabG 3-ketoacyl-(acyl 26.5 3.1E+02 0.0068 26.2 8.3 31 225-255 7-37 (253)
215 PRK05650 short chain dehydroge 26.5 2.8E+02 0.0061 27.1 8.1 68 226-293 3-73 (270)
216 PRK06935 2-deoxy-D-gluconate 3 26.5 3.6E+02 0.0079 26.1 8.8 68 224-293 16-87 (258)
217 PTZ00409 Sir2 (Silent Informat 26.4 28 0.00061 35.4 0.8 56 225-288 202-259 (271)
218 PRK06113 7-alpha-hydroxysteroi 26.4 3.2E+02 0.0069 26.4 8.4 69 224-293 12-84 (255)
219 smart00834 CxxC_CXXC_SSSS Puta 26.3 41 0.00088 23.3 1.4 22 88-109 7-34 (41)
220 COG4007 Predicted dehydrogenas 26.1 7.3E+02 0.016 25.5 12.3 93 236-347 33-128 (340)
221 PF05191 ADK_lid: Adenylate ki 26.0 34 0.00074 23.8 0.9 24 89-112 4-32 (36)
222 cd08230 glucose_DH Glucose deh 25.9 2.2E+02 0.0047 29.4 7.4 49 225-275 175-223 (355)
223 PRK12937 short chain dehydroge 25.8 3.5E+02 0.0075 25.7 8.4 57 224-280 6-63 (245)
224 PRK12935 acetoacetyl-CoA reduc 25.6 4.2E+02 0.009 25.3 9.0 70 224-293 7-80 (247)
225 PRK07067 sorbitol dehydrogenas 25.4 3.4E+02 0.0075 26.2 8.4 31 225-255 8-38 (257)
226 PRK06114 short chain dehydroge 25.3 4.4E+02 0.0095 25.5 9.1 55 225-279 10-65 (254)
227 COG1675 TFA1 Transcription ini 25.2 18 0.00039 34.4 -0.8 27 89-116 116-146 (176)
228 PRK08340 glucose-1-dehydrogena 25.2 2.6E+02 0.0057 27.2 7.5 29 226-254 3-31 (259)
229 cd01411 SIR2H SIR2H: Uncharact 25.2 34 0.00074 33.7 1.1 29 81-112 116-147 (225)
230 PRK04169 geranylgeranylglycery 25.0 4.1E+02 0.0088 26.4 8.6 27 255-281 16-42 (232)
231 TIGR03772 anch_rpt_subst ancho 24.7 7.6E+02 0.016 27.4 11.5 67 225-296 372-445 (479)
232 PRK05653 fabG 3-ketoacyl-(acyl 24.7 2.4E+02 0.0052 26.7 7.0 56 225-281 7-63 (246)
233 PRK05693 short chain dehydroge 24.6 4.1E+02 0.0088 26.1 8.8 66 225-294 3-69 (274)
234 PRK06124 gluconate 5-dehydroge 24.6 3.5E+02 0.0076 26.1 8.3 70 224-293 12-84 (256)
235 TIGR03206 benzo_BadH 2-hydroxy 24.6 3.6E+02 0.0078 25.7 8.3 67 225-292 5-75 (250)
236 COG0836 {ManC} Mannose-1-phosp 24.6 3.8E+02 0.0083 28.1 8.5 62 417-482 51-124 (333)
237 cd01981 Pchlide_reductase_B Pc 24.6 8.5E+02 0.018 26.1 11.9 82 237-323 182-263 (430)
238 cd06388 PBP1_iGluR_AMPA_GluR4 24.5 8.3E+02 0.018 25.6 12.0 49 196-252 44-92 (371)
239 PRK07792 fabG 3-ketoacyl-(acyl 24.5 4.8E+02 0.01 26.4 9.5 69 224-292 13-85 (306)
240 PRK08213 gluconate 5-dehydroge 24.4 2.2E+02 0.0048 27.6 6.8 58 224-282 13-71 (259)
241 PRK08813 threonine dehydratase 24.3 7.1E+02 0.015 26.3 10.8 35 329-373 84-118 (349)
242 PRK12939 short chain dehydroge 24.3 2.3E+02 0.0049 27.1 6.8 29 225-253 9-37 (250)
243 TIGR01011 rpsB_bact ribosomal 24.3 6.9E+02 0.015 24.6 11.6 32 269-301 60-91 (225)
244 PRK12826 3-ketoacyl-(acyl-carr 24.3 2.3E+02 0.0049 27.0 6.8 68 225-292 8-78 (251)
245 PF13561 adh_short_C2: Enoyl-( 24.2 2E+02 0.0043 27.8 6.3 49 231-279 4-53 (241)
246 cd01410 SIRT7 SIRT7: Eukaryoti 24.1 32 0.00069 33.4 0.7 32 225-256 158-191 (206)
247 cd03145 GAT1_cyanophycinase Ty 24.0 6.7E+02 0.014 24.3 11.1 44 312-355 15-58 (217)
248 TIGR02825 B4_12hDH leukotriene 23.8 4.5E+02 0.0099 26.5 9.2 47 225-275 141-187 (325)
249 PRK12744 short chain dehydroge 23.8 5E+02 0.011 25.0 9.2 69 225-293 10-85 (257)
250 PRK00481 NAD-dependent deacety 23.7 38 0.00083 33.6 1.1 29 81-112 120-153 (242)
251 PRK12429 3-hydroxybutyrate deh 23.5 2.6E+02 0.0056 26.9 7.0 67 225-292 6-76 (258)
252 COG0800 Eda 2-keto-3-deoxy-6-p 23.4 7.2E+02 0.016 24.4 10.7 74 227-306 43-117 (211)
253 PRK06198 short chain dehydroge 23.2 4.4E+02 0.0094 25.4 8.7 69 225-293 8-80 (260)
254 PRK09242 tropinone reductase; 23.2 4.1E+02 0.0088 25.7 8.4 68 225-293 11-84 (257)
255 PF02593 dTMP_synthase: Thymid 23.0 1.4E+02 0.0031 29.4 4.9 63 315-379 65-128 (217)
256 KOG0855 Alkyl hydroperoxide re 22.9 87 0.0019 29.7 3.2 16 22-37 28-43 (211)
257 PLN00112 malate dehydrogenase 22.9 1E+03 0.022 26.1 14.1 128 224-366 101-251 (444)
258 PRK05299 rpsB 30S ribosomal pr 22.8 8E+02 0.017 24.8 11.6 33 269-302 62-94 (258)
259 TIGR01763 MalateDH_bact malate 22.8 8.4E+02 0.018 25.0 12.1 119 231-366 8-143 (305)
260 PRK07231 fabG 3-ketoacyl-(acyl 22.7 4E+02 0.0086 25.4 8.2 30 225-254 7-36 (251)
261 PF03604 DNA_RNApol_7kD: DNA d 22.7 41 0.00089 22.8 0.8 23 89-111 3-27 (32)
262 COG4307 Uncharacterized protei 22.5 28 0.00061 35.1 -0.1 26 81-111 1-27 (349)
263 PF00185 OTCace: Aspartate/orn 22.5 3.2E+02 0.0069 25.2 7.0 50 233-283 13-69 (158)
264 PRK07326 short chain dehydroge 22.4 3.9E+02 0.0084 25.3 8.0 30 225-254 8-37 (237)
265 PF01210 NAD_Gly3P_dh_N: NAD-d 22.3 1.2E+02 0.0027 27.6 4.2 29 229-257 4-32 (157)
266 PRK08416 7-alpha-hydroxysteroi 22.0 4.6E+02 0.0099 25.5 8.6 33 224-256 9-41 (260)
267 cd01075 NAD_bind_Leu_Phe_Val_D 22.0 5.8E+02 0.013 24.4 9.0 49 205-253 7-57 (200)
268 PF05876 Terminase_GpA: Phage 22.0 59 0.0013 36.6 2.3 30 80-112 197-240 (557)
269 COG1985 RibD Pyrimidine reduct 22.0 2.5E+02 0.0053 27.6 6.4 51 225-278 75-125 (218)
270 cd01078 NAD_bind_H4MPT_DH NADP 21.9 3.3E+02 0.0071 25.5 7.2 43 249-291 30-72 (194)
271 PRK07832 short chain dehydroge 21.7 3.3E+02 0.0072 26.7 7.6 69 225-293 2-74 (272)
272 PRK08265 short chain dehydroge 21.7 4.7E+02 0.01 25.4 8.6 66 225-294 8-77 (261)
273 PRK06924 short chain dehydroge 21.7 3.8E+02 0.0083 25.7 7.8 30 225-254 3-32 (251)
274 PRK05993 short chain dehydroge 21.7 7.7E+02 0.017 24.2 17.5 65 225-293 6-71 (277)
275 PRK07063 short chain dehydroge 21.6 4.6E+02 0.0099 25.3 8.5 30 225-254 9-38 (260)
276 PRK06200 2,3-dihydroxy-2,3-dih 21.6 4.4E+02 0.0096 25.5 8.4 66 225-294 8-77 (263)
277 PRK14030 glutamate dehydrogena 21.6 3.4E+02 0.0074 29.8 7.9 50 204-253 208-257 (445)
278 PF03853 YjeF_N: YjeF-related 21.6 6.5E+02 0.014 23.3 9.6 30 225-254 27-59 (169)
279 TIGR01064 pyruv_kin pyruvate k 21.5 1.1E+03 0.024 25.9 12.5 116 240-368 263-405 (473)
280 TIGR01831 fabG_rel 3-oxoacyl-( 21.4 4E+02 0.0086 25.3 7.9 67 227-293 2-72 (239)
281 PRK12825 fabG 3-ketoacyl-(acyl 21.3 3E+02 0.0066 26.0 7.0 57 225-281 8-65 (249)
282 PRK07904 short chain dehydroge 21.2 6.1E+02 0.013 24.7 9.3 34 221-254 6-40 (253)
283 cd05291 HicDH_like L-2-hydroxy 21.2 8.8E+02 0.019 24.7 13.4 121 232-366 8-142 (306)
284 PRK07062 short chain dehydroge 21.1 4.9E+02 0.011 25.2 8.5 32 224-255 9-40 (265)
285 cd01413 SIR2_Af2 SIR2_Af2: Arc 21.1 47 0.001 32.6 1.2 31 226-256 175-207 (222)
286 PRK05717 oxidoreductase; Valid 21.0 4.5E+02 0.0098 25.3 8.3 67 224-294 11-81 (255)
287 PRK05875 short chain dehydroge 20.9 4.4E+02 0.0095 25.8 8.2 30 225-254 9-38 (276)
288 PRK07775 short chain dehydroge 20.9 4.9E+02 0.011 25.6 8.6 67 225-292 12-82 (274)
289 PLN02932 3-ketoacyl-CoA syntha 20.8 2.1E+02 0.0047 31.6 6.3 73 407-486 382-454 (478)
290 PRK11823 DNA repair protein Ra 20.8 49 0.0011 36.2 1.3 19 88-108 9-28 (446)
291 TIGR03201 dearomat_had 6-hydro 20.7 7.6E+02 0.016 25.3 10.3 46 225-275 169-214 (349)
292 PRK07677 short chain dehydroge 20.7 4.2E+02 0.0091 25.5 7.9 29 225-253 3-31 (252)
293 PRK07206 hypothetical protein; 20.6 9.4E+02 0.02 25.4 11.2 62 267-330 66-127 (416)
294 PRK09275 aspartate aminotransf 20.5 2.9E+02 0.0064 30.9 7.4 81 226-307 163-255 (527)
295 cd08295 double_bond_reductase_ 20.5 5.6E+02 0.012 26.0 9.2 47 224-274 153-200 (338)
296 PF01927 Mut7-C: Mut7-C RNAse 20.4 67 0.0015 29.4 2.0 8 87-94 92-99 (147)
297 PRK07985 oxidoreductase; Provi 20.3 5.2E+02 0.011 25.9 8.8 69 225-293 51-124 (294)
298 PRK08261 fabG 3-ketoacyl-(acyl 20.2 6E+02 0.013 27.2 9.7 69 224-294 211-281 (450)
299 TIGR02300 FYDLN_acid conserved 20.2 65 0.0014 29.0 1.7 24 89-112 12-37 (129)
300 PRK06077 fabG 3-ketoacyl-(acyl 20.2 3.3E+02 0.0071 26.1 7.0 56 225-280 8-64 (252)
301 smart00488 DEXDc2 DEAD-like he 20.2 2.8E+02 0.006 28.3 6.6 61 308-368 10-70 (289)
302 smart00489 DEXDc3 DEAD-like he 20.2 2.8E+02 0.006 28.3 6.6 61 308-368 10-70 (289)
303 PRK08303 short chain dehydroge 20.1 5.6E+02 0.012 26.0 8.9 71 225-295 10-93 (305)
No 1
>PLN02569 threonine synthase
Probab=100.00 E-value=4.9e-94 Score=772.40 Aligned_cols=462 Identities=85% Similarity=1.341 Sum_probs=425.6
Q ss_pred CCCccchhHHHhcCCCCCCCcceeeccCCCCCCCCCcccCCCceeeCCCCCcceecccccccccCChHHHHHhhhhhccc
Q 009781 59 GGGINIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYWKALFDSRVGK 138 (526)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~y~s~~~t~~cg~~~~~~~~~~~c~cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~ 138 (526)
.++.|||++|+|+.+.+.++|+.+|+.+..|..||++|+.++..|+|+|||+|+|.||++.++.++...|++.++.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~C~~Cg~~y~~~~~~~~C~cgg~l~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (484)
T PLN02569 22 TADENIRDEARRGPPAPPDEFSAKYVPFLECPLTGEKYSLDEVVYRSKSGGLLDVRHDMEALKRYDGKYWRALFDSRVGK 101 (484)
T ss_pred CcchhhhhhhhhcCCCCCcccccccccccEeCCCCCcCCCccccccCCCCCeEEEecchhhhccccchhhhhhHhccccc
Confidence 46789999999988888899999999999999999999999999999999999999999877655555677777766555
Q ss_pred ccCCCCCCccccccccCCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHH
Q 009781 139 TTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLK 218 (526)
Q Consensus 139 ~~~~~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~ 218 (526)
..|++.+|||||++|+||..+.+.+++|+||+|||++++++++..+|+.+||+|+|++||||||||||+.++++.+.+.+
T Consensus 102 ~~~~~~~g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g 181 (484)
T PLN02569 102 TTWPYGSGVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLR 181 (484)
T ss_pred ccCCCCCCccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 66788889999999879987667789999999999999998764256678999999999999999999999999998765
Q ss_pred hcCCCceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCee
Q 009781 219 RMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIY 298 (526)
Q Consensus 219 ~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~ 298 (526)
..+++...|+++||||+|+|+|+||+++|++|+||||++.++..|+.||+.|||+|+.|+++||+|++++++++++.++|
T Consensus 182 ~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~~~~~~~ 261 (484)
T PLN02569 182 KMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVTAELPIY 261 (484)
T ss_pred hccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCE
Confidence 54444468999999999999999999999999999999767889999999999999999999999999999998888999
Q ss_pred eccCCchhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHH
Q 009781 299 LANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYK 378 (526)
Q Consensus 299 ~~ns~Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~ 378 (526)
++|++||++++||+|+++||++|++|..||+||+|+|+||+++|+++||++++++|+++++||||+||+++|+|++++|+
T Consensus 262 ~~n~~Np~~ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~ 341 (484)
T PLN02569 262 LANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYK 341 (484)
T ss_pred ecCCCCcchhHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHH
Confidence 99999999999999999999999998679999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHHHc
Q 009781 379 SGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCK 458 (526)
Q Consensus 379 ~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l~~~Gi~veP~sA~alAal~~l~~~ 458 (526)
.|...+.+....+|++++|.++.|.++.+.+.++++++|.++.|+|+|+++|+++++++|+++||+||+++||++++.++
T Consensus 342 ~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~a~~~Gi~vepssAaalAal~kl~~~ 421 (484)
T PLN02569 342 SGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAEADKTGMFLCPHTGVALAALKKLRAS 421 (484)
T ss_pred cCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcEECchHHHHHHHHHHHHHc
Confidence 99755556666789999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred CCCCCCCeEEEEECCCCCCchHHHHhhhcchhhHHHhhhcCCCcccCCCHHHHHHHHHHHHh
Q 009781 459 GVIGKTDKTVVVSTAHGLKFTQSKIDYHSQNIKDMACRLANPPVSVKADFGSVMDVLKKYLL 520 (526)
Q Consensus 459 g~i~~~~~vVvv~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~ 520 (526)
|.+.++++||+++||+|+||++..++||.++++++.++++++|..+++|++.|+++|+.+++
T Consensus 422 g~i~~~~~VV~i~Tg~GlK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (484)
T PLN02569 422 GVIGPTDRTVVVSTAHGLKFTQSKIDYHSKEIPDMACRFANPPVSVKADFGSVMDVLKKYLS 483 (484)
T ss_pred CCCCCCCcEEEEeCCCcccChhHHHHhcccccccchhhccCCccccCCCHHHHHHHHHHHhc
Confidence 98889999999999999999999999999999999999999999999999999999998875
No 2
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.9e-76 Score=630.31 Aligned_cols=405 Identities=27% Similarity=0.418 Sum_probs=354.6
Q ss_pred CCcceeeccCCCCCCCCCcccCCCceeeCC-CCCcceecccccccccC-ChHHHHHhhhhhcccccCCCCCCcccccccc
Q 009781 77 HKFSAKYVPFNAGPSCTESYSLDEVVYRSQ-SGGLLDVQHDMGALKHY-DGAYWKALFDSRVGKTTWPYGSGVWSKKEWV 154 (526)
Q Consensus 77 ~~~~~~y~s~~~t~~cg~~~~~~~~~~~c~-cGGll~v~~d~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~ 154 (526)
+|--|.|+...+|..||++|+.+.. |+|+ |||+|++.||++.++.. +++.| ... ..|+|||++|
T Consensus 9 ~~~~~~~~~~l~C~~Cg~~~~~~~~-~~C~~cg~~l~~~y~~~~~~~~~~~~~~----~~~--------~~~~wry~~~- 74 (421)
T PRK07591 9 TTTDLGPAVALKCRECGAEYPLGPI-HVCEECFGPLEVAYDYDAIRKRVSRESI----EAG--------PKSIWRYRDL- 74 (421)
T ss_pred ccccccceeEEEeCCCCCcCCCCCC-ccCCCCCCeEEEEechhhhccccChhhh----hcc--------ccchhcchhh-
Confidence 3334778888889999999998766 9995 99999999998766422 22111 111 3589999995
Q ss_pred CCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccch
Q 009781 155 LPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGD 234 (526)
Q Consensus 155 lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN 234 (526)
||..+ ++.++|+||+|||++++++++. +|+.+||+|+|++|||||||||++.++++.+.+ .| ..+|+++||||
T Consensus 75 lp~~~-~~~v~l~eG~TPLv~~~~l~~~-lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~---~g--~~~vv~aSsGN 147 (421)
T PRK07591 75 LPVPA-DNPVDLGPGFTPLVKADRLARE-LGLKNLYIKDDSVNPTHSFKDRVVSVALTAARE---LG--FTTVACASTGN 147 (421)
T ss_pred Ccccc-CCCCcCCCCCCcceEhHHHHHH-hCCCcEEEEeCCCCCccChHHHHHHHHHHHHHH---cC--CCEEEEeCCCH
Confidence 88644 3469999999999999999887 787799999999999999999999999988754 34 46789999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcC-CeeeccC-CchhHHhHHH
Q 009781 235 TSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSEL-PIYLANS-LNSLRLEGQK 312 (526)
Q Consensus 235 ~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~-~~~~~ns-~Np~~i~G~~ 312 (526)
+|+|+|+||+++|++|+||||++ ++..|+.||+.|||+|+.++++++++.+.+++++++. ++|++|+ .||++++||+
T Consensus 148 ~g~alA~~aa~~Gl~~~I~vP~~-~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ieG~~ 226 (421)
T PRK07591 148 LANSVAAHAARAGLDSCVFIPAD-LEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYYAEGSK 226 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCcccccchH
Confidence 99999999999999999999997 7889999999999999999999999999999999887 8888887 4899999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCC-CCCeEEEEecCCCchHHHHHHhCCccccccCCcc
Q 009781 313 TAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVD-RIPRLVCAQAANANPLYLYYKSGWKDFKPVRANT 391 (526)
Q Consensus 313 T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~-~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~ 391 (526)
|+++||++|++|..||+||+|+|+||+++|+++||++++++|+++ +.||||+||+++|++++++|+.|.....+. ..+
T Consensus 227 Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~-~~~ 305 (421)
T PRK07591 227 TLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPV-KPN 305 (421)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCC-CCC
Confidence 999999999998669999999999999999999999999999996 778999999999999999999986443333 357
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEE
Q 009781 392 TFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVV 470 (526)
Q Consensus 392 Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv 470 (526)
|+++++.++.|.+....+.++++++|.++.|+|+|+++|++++ +++|+++||++|+++||++++.++|.+.++++||++
T Consensus 306 tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i 385 (421)
T PRK07591 306 TIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVY 385 (421)
T ss_pred chhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 9999999999998888999999999999999999999999987 569999999999999999999999989999999999
Q ss_pred ECCCCCCchHHHHhhhcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 471 STAHGLKFTQSKIDYHSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 471 ~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
+||+|+|+++.+. +..+.+..+++++++|++.++
T Consensus 386 ~tG~G~kd~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 419 (421)
T PRK07591 386 ITGNGLKTLEAVA------------GYVGPTATIKPSLDAFEAALL 419 (421)
T ss_pred eCCCccCCHHHHH------------HhcCCCccCCCCHHHHHHHHh
Confidence 9999999988743 234566778999999888775
No 3
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=9e-76 Score=621.69 Aligned_cols=390 Identities=41% Similarity=0.681 Sum_probs=348.1
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcceecccccccccCChHHHHHhhhhhcccccCCCCCCccccccccCCCCCccchhcc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSA 166 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 166 (526)
+|.+||++|+.++..++|+ |||+|++.||++.+. + .++ .+|||||++| ||.. +++++|
T Consensus 5 ~C~~cg~~~~~~~~~~~Cp~cg~~l~~~y~~~~~~-------~---~~~--------~~~~wry~~~-lp~~--~~~v~l 63 (397)
T PRK06260 5 KCIECGKEYDPDEIIYTCPECGGLLEVIYDLDKIF-------D---KLR--------GRGVWRYKEL-LPVK--KKIVSL 63 (397)
T ss_pred EECCCCCCCCCCCccccCCCCCCeEEEEecchhhh-------h---ccC--------Ccceeeehhh-cCCC--CCcccC
Confidence 4999999999988889995 999999999865321 1 111 3589999995 8974 348999
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
++|+|||+++++++.. +|+.+||+|+|++|||||||||++.++++++.+ .| ..+|+++||||+|+|+|+||+++
T Consensus 64 ~~G~TPLv~~~~l~~~-~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~---~g--~~~vv~aSsGN~g~alA~~aa~~ 137 (397)
T PRK06260 64 NEGGTPLYRCPNLEKE-LGVKELYVKHEGANPTGSFKDRGMTVGVTKALE---LG--VKTVACASTGNTSASLAAYAARA 137 (397)
T ss_pred CCCCCCeEEchhhHHH-hCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHH---cC--CCEEEEeCCcHHHHHHHHHHHHc
Confidence 9999999999998876 777789999999999999999999999998754 34 46899999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHHHHHHHcCCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
|++|+||||++.+++.|+.|++.|||+|+.++++++++.+.+++++++.++|.+|++||++++||+|+++||++|++|..
T Consensus 138 G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~np~~~~G~~t~a~Ei~eQl~~~~ 217 (397)
T PRK06260 138 GLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNSINPFRLEGQKTIGFEIADQLGWEV 217 (397)
T ss_pred CCcEEEEEeCCCccHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecCCCchhhcchhhHHHHHHHHhCCCC
Confidence 99999999986468899999999999999999999999999999998889999999999999999999999999999767
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|+++||+++.++|++++.||||+||++++++++++|+.|.....+.....|+++++.++.|.++.
T Consensus 218 pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~ 297 (397)
T PRK06260 218 PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAP 297 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999975544555678999999999999999
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDY 485 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~ 485 (526)
+.++++++++|.++.|+|+|++++++++ +++|+++||++|+++||++++.++|.+.++++||+++||+|+|+++.+.
T Consensus 298 ~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~~-- 375 (397)
T PRK06260 298 KALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAAI-- 375 (397)
T ss_pred HHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHHH--
Confidence 9999999999999999999999999987 6699999999999999999999999888999999999999999988753
Q ss_pred hcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 486 HSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
...+.+..++++++++++.++
T Consensus 376 ----------~~~~~~~~~~~~~~~~~~~~~ 396 (397)
T PRK06260 376 ----------KACEEPIPVEPDMEALLKVLR 396 (397)
T ss_pred ----------hhcCCCccCCCCHHHHHHHhh
Confidence 223455667889998877664
No 4
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-76 Score=619.38 Aligned_cols=404 Identities=34% Similarity=0.532 Sum_probs=347.1
Q ss_pred eeeccCCCCCCCCCcccCCCceeeCC-CCCcceecccccccccCChHHHHHhhhhhcccccCCCCCCccccccccCCCCC
Q 009781 81 AKYVPFNAGPSCTESYSLDEVVYRSQ-SGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEID 159 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~~~~c~-cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~ 159 (526)
|+|++ ++|..||.+|+-....++|+ ||+.|.+.|++..+..++ .|. ..+|..++|||.++ ||.-
T Consensus 1 m~~~~-~rc~~cg~~f~~a~~~~~c~~cGl~lp~~~~~~~~~~~~--~~~----------~~~~~~~~~~~~~~-lp~~- 65 (411)
T COG0498 1 MKYVS-LRCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLEEID--KLL----------GLSYPELAWRYLEL-LPVG- 65 (411)
T ss_pred CceeE-eecCCCCcchhhHHhhCcCCcCCcccccccCccchhhhh--hhh----------cccccchHHHHHHH-CCCC-
Confidence 78888 89999999888555667896 777776666544321111 111 12345679999995 8853
Q ss_pred ccchhcccccCCCceecccccccccCCC--cEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHH
Q 009781 160 SDDIVSAFEGNSNLFWAERFGKEFLQMN--DLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSA 237 (526)
Q Consensus 160 ~~~~vsl~eG~TPL~~~~~l~~~~lg~~--~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~ 237 (526)
....++|.||.||+++.+.+... +|+. ++|+|+|++|||||||||++.++++.+.+++ . .+|++|||||||+
T Consensus 66 ~~~~~~l~eg~tp~~~~~~~~~~-l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g---~--~~I~~ASSGnTgA 139 (411)
T COG0498 66 EIPAVSLGEGGTPLYKAPALAAP-LGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELG---A--KTILCASSGNTGA 139 (411)
T ss_pred CcchhhhhhccCccccCcccchh-hccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhc---C--CEEEEeCCchHHH
Confidence 34567999999999999887777 7763 5999999999999999999999999997753 1 6899999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-eeeccCCchhHHhHHHHHHH
Q 009781 238 ALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAI 316 (526)
Q Consensus 238 AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~~i~G~~T~a~ 316 (526)
|+|+|+++.|++|+|++|+++++..|+.||..+|++++.|+|+||||++++++++++.+ ++.+|+.||+|++||+|++|
T Consensus 140 s~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~f 219 (411)
T COG0498 140 SAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAF 219 (411)
T ss_pred HHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHh
Confidence 99999999999999999999899999999999999999999999999999999999877 78889999999999999999
Q ss_pred HHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccc
Q 009781 317 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASA 396 (526)
Q Consensus 317 EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~ 396 (526)
||++|++|+.||+|+||+||||+++|+|+||+++...|.++..|++.+||++++.|+...++.+. ....|++++
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~------~~~~T~a~a 293 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR------ETPETIAPA 293 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccccc------ccccccccc
Confidence 99999999899999999999999999999999999999999999999999999999999988774 346899999
Q ss_pred cccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCC
Q 009781 397 IQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHG 475 (526)
Q Consensus 397 i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g 475 (526)
|+|++|+|+++++++++++.|.++.|||+||+++++++ +++|+++|||||+++|++++++++ .+++++++|+++||||
T Consensus 294 m~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~-~i~~~~~vV~v~Tg~~ 372 (411)
T COG0498 294 MDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREK-IIDPDETVVLVLTGHG 372 (411)
T ss_pred cccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHh-hcCCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999997 668999999999999999999998 8889999999999999
Q ss_pred CCchHHHHhhhcchhhHHHhhhcCCCcccC-CCHHHHHHHHHH
Q 009781 476 LKFTQSKIDYHSQNIKDMACRLANPPVSVK-ADFGSVMDVLKK 517 (526)
Q Consensus 476 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~v~~~~~~ 517 (526)
+||++++.... ..+ ......+..++ +|+++++.++.+
T Consensus 373 ~K~~~~v~~~~-~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 410 (411)
T COG0498 373 LKFPDTVEEAP-AEL----AEIPELPLRVEDADLEALKKYILQ 410 (411)
T ss_pred ccChhHHHhcc-ccc----cccccccccCCcccHHHHHHHHhc
Confidence 99999975541 111 11111122234 489988887753
No 5
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=8.3e-75 Score=613.75 Aligned_cols=380 Identities=26% Similarity=0.446 Sum_probs=336.9
Q ss_pred CCCCCCCCCcccCCCceeeCCCCCcceeccccccccc-CChHHHHHhhhhhcccccCCCCCCccccccccCCCCCccchh
Q 009781 86 FNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKH-YDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIV 164 (526)
Q Consensus 86 ~~~t~~cg~~~~~~~~~~~c~cGGll~v~~d~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~v 164 (526)
..+|.+||++|+.++..++|+|||+|++.||++.++. +++.. +.. -..++|||++| ||....+.++
T Consensus 7 ~~~C~~Cg~~~~~~~~~~~C~cg~~l~~~~d~~~~~~~~~~~~----~~~--------~~~~~~ry~~~-lp~~~~~~~v 73 (394)
T PRK08197 7 HLECSKCGETYDADQVHNLCKCGKPLLVRYDLEAVKQAVTREA----LAG--------RPANLWRYHEL-LPVRDPEHIV 73 (394)
T ss_pred EEEECCCCCCCCCCCcceecCCCCeeEEEechhhhhhccchhh----hcc--------CCcchhcchhh-CCCCCCCCCC
Confidence 3459999999999888899999999999999765432 11110 111 13579999995 8976556789
Q ss_pred cccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHH
Q 009781 165 SAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 165 sl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
+|+||+|||++++++++. +|+.+||+|+|++|||||||||++.++++.+.+ .| ..+|+++||||+|+|+|+||+
T Consensus 74 slgeG~TPL~~~~~l~~~-~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~---~g--~~~vv~aSsGN~g~alA~~aa 147 (394)
T PRK08197 74 SLGEGMTPLLPLPRLGKA-LGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKE---LG--VKHLAMPTNGNAGAAWAAYAA 147 (394)
T ss_pred ccCcCCCCceEhHHHHHH-hCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHH---cC--CCEEEEeCCcHHHHHHHHHHH
Confidence 999999999999998877 787799999999999999999999999988754 34 468999999999999999999
Q ss_pred hcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcC
Q 009781 245 SAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFD 323 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~ 323 (526)
++|++|+||+|++ +++.|+.+|+.|||+|+.++++++++.+.+++++++.++|++|++ ||++++|++|+++||++|++
T Consensus 148 ~~G~~~~v~vp~~-~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieG~~t~a~Ei~eQl~ 226 (394)
T PRK08197 148 RAGIRATIFMPAD-APEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVSTLKEPYRIEGKKTMGLELAEQLG 226 (394)
T ss_pred HcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCCCCccchhcHHHHHHHHHHHcC
Confidence 9999999999997 788999999999999999999999999999999888899999984 99999999999999999999
Q ss_pred CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCC-CCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCC
Q 009781 324 WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVD-RIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDP 402 (526)
Q Consensus 324 ~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~-~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P 402 (526)
|..||+||+|+|+||+++|+++||+++.++||++ +.||||+||++++++++++|+.|.....+....+|+++++.++.|
T Consensus 227 ~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~ 306 (394)
T PRK08197 227 WRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKA 306 (394)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCC
Confidence 8679999999999999999999999999999985 899999999999999999999986444444456799999999988
Q ss_pred ccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 403 VSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 403 ~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
......++.+++++|.++.|+|+|+++++++| +++|+++||++|+++||++++.+++.+.++++||+++||+|+||++.
T Consensus 307 ~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 307 LGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred CCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 87777889999999999999999999999997 56999999999999999999999988888999999999999999988
Q ss_pred HHhh
Q 009781 482 KIDY 485 (526)
Q Consensus 482 ~~~~ 485 (526)
+..+
T Consensus 387 ~~~~ 390 (394)
T PRK08197 387 VPVV 390 (394)
T ss_pred hhhh
Confidence 6543
No 6
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=4.9e-70 Score=568.14 Aligned_cols=344 Identities=26% Similarity=0.338 Sum_probs=305.6
Q ss_pred CCCCCCCcccCCCceeeCCCCCcceecccccccccCChHHHHHhhhhhcccccCCCCCCccccccccCCCCCccchhccc
Q 009781 88 AGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAF 167 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~ 167 (526)
+|.+||++|+.+ ..++|+|||+|++.||++.++. ++ . ..+||||++| ||..+ +.+++|+
T Consensus 3 ~C~~Cg~~~~~~-~~~~C~c~~~l~~~~~~~~~~~-----~~--------~-----~~~~wry~~~-lP~~~-~~~~sl~ 61 (347)
T PRK08329 3 RCTKCGRTYEEK-FKLRCDCGGTLLVEREYGSFDS-----PR--------E-----YLDMRRYIDY-LPVDE-EFLPHLT 61 (347)
T ss_pred CcCCCCCCcCCC-CceecCCCCcEEEEeccccccc-----cc--------c-----ccchhhhHHh-CCCCC-CCCCcCC
Confidence 599999999854 4589999999999998764321 01 0 1479999995 89654 4568999
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
||.|||+++. . +||+|+|++|||||||||++.+++..+.+ .| ..+|+++||||+|+|+|+||+++|
T Consensus 62 eg~Tpl~~~~--------~-~l~~K~E~~nPtGSfKdRga~~~i~~a~~---~g--~~~vv~aSsGN~g~alA~~aa~~G 127 (347)
T PRK08329 62 PPITPTVKRS--------I-KVYFKLDYLQPTGSFKDRGTYVTVAKLKE---EG--INEVVIDSSGNAALSLALYSLSEG 127 (347)
T ss_pred CCCCccccCC--------C-eEEEEeCCCCCCcCCHHHHHHHHHHHHHH---cC--CCEEEEECCCcHHHHHHHHHHHcC
Confidence 9999999752 2 79999999999999999999999998764 34 468999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-CchhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS-LNSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ +++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++ .||++++|++|+++||++|++ .
T Consensus 128 ~~~~v~vp~~-~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~--~ 204 (347)
T PRK08329 128 IKVHVFVSYN-ASKEKISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIG--V 204 (347)
T ss_pred CcEEEEECCC-ChHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcC--C
Confidence 9999999997 78999999999999999999999999888888888877655555 699999999999999999998 6
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|+++||+++.++|++++.||||+||+++++++++.+ ...+|+++++.++.|....
T Consensus 205 pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~----------~~~~t~a~gi~i~~~~~~~ 274 (347)
T PRK08329 205 PDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS----------KSENKLADGIAIPEPPRKE 274 (347)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc----------CCCCceeeeEEeCCCCCHH
Confidence 999999999999999999999999999999899999999999999987532 1347999999999998888
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCch
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFT 479 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~ 479 (526)
..++++++++|.++.|+|+|+++|++++.++|+++||+||+++||++++.++|.+.++++||+++||+|+|+.
T Consensus 275 ~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 275 EMLRALEESNGFCISVGEEETRAALHWLRRMGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 8889999999999999999999999998679999999999999999999999999999999999999999973
No 7
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=8.9e-70 Score=563.16 Aligned_cols=331 Identities=24% Similarity=0.396 Sum_probs=291.1
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcceecccccccccCChHHHHHhhhhhcccccCCCCCCccccccccCCCCCccchhcc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSA 166 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 166 (526)
+|.+||++|+. +..++|+ |||+|++.||++.. .++| ++ +||.. +++++|
T Consensus 5 ~C~~Cg~~~~~-~~~~~C~~cg~~l~~~~d~~~~------------------------~~~~--~~-~lp~~--~~~vsl 54 (338)
T PRK06450 5 VCMKCGKERES-IYEIRCKKCGGPFEILIDFEFD------------------------KNLE--RK-NFPYI--KHFISL 54 (338)
T ss_pred EECCcCCcCCC-cccccCCcCCCEeEEeeccccc------------------------chhh--Hh-hCCCC--cCCCCC
Confidence 59999999986 5568995 99999999886521 1355 25 47864 248999
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
+||+|||++. .+||+|+|++|||||||||++.++++++.+ .| .++|+++||||+|+|+|+||+++
T Consensus 55 geG~TPLv~~----------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~---~g--~~~vv~aSsGN~g~slA~~aa~~ 119 (338)
T PRK06450 55 GEGRTPLIKK----------GNIWFKLDFLNPTGSYKDRGSVTLISYLAE---KG--IKQISEDSSGNAGASIAAYGAAA 119 (338)
T ss_pred CCCCCCceec----------CCEEEEecCCCCcCCCHHHHHHHHHHHHHH---cC--CCEEEEECCcHHHHHHHHHHHHc
Confidence 9999999873 269999999999999999999999998865 34 46899999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-eeeccCCchhHHhHHHHHHHHHHHHcCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
|++|+||||++ +++.|+.||+.|||+|+.++++++++.++ +++.+ +|..+.+||++++|++|+++||++|++|.
T Consensus 120 G~~~~i~vP~~-~~~~k~~~i~~~GA~vi~v~~~~~~~~~~----a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~ 194 (338)
T PRK06450 120 GIEVKIFVPET-ASGGKLKQIESYGAEVVRVRGSREDVAKA----AENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWK 194 (338)
T ss_pred CCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHH----HHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 99999999997 89999999999999999999999988775 34456 44446689999999999999999999986
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.||+||+|+|+||+++|+++||+++.++|+++++||||+||+++++|++++|+.+ ...+....+|++++|.++.|...
T Consensus 195 ~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~--~~~~~~~~~tia~~l~~~~p~~~ 272 (338)
T PRK06450 195 IPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGI--SYTPPDKVTSIADALVSTRPFLL 272 (338)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCC--CCCCCCCCCcceeeeecCCCCCH
Confidence 7999999999999999999999999999999999999999999999999999843 34444556899999999999999
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCc
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~ 478 (526)
.+.+.+++++ |.++.|+|+|+++|+++|.++|+++||+||+++||++++ ++++||+++||+|+|.
T Consensus 273 ~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~~Gi~vepssaaalAa~~~l-------~~~~vv~vltG~glK~ 337 (338)
T PRK06450 273 DYMVKALSEY-GECIVVSDNEIVEAWKELAKKGLLVEYSSATVYAAYKKY-------SVNDSVLVLTGSGLKV 337 (338)
T ss_pred HHHHHHHHhc-CcEEEECHHHHHHHHHHHHHcCCEEChhHHHHHHHHHHC-------CCCCEEEEeCCCCccC
Confidence 9999999998 788999999999999998678999999999999999886 3468999999999996
No 8
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2.3e-69 Score=579.95 Aligned_cols=356 Identities=32% Similarity=0.476 Sum_probs=318.9
Q ss_pred CCCCCCCcccCCCceeeCCCCCcceecccccccccCChHHHHHhhhhhcccccCCCCCCccccccccCCCCCccchhccc
Q 009781 88 AGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAF 167 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~ 167 (526)
+|.+||++|+.+ ..++|.|||+|++.||++.++. ..|+ .+ .+|||||++| ||.. +.+++++
T Consensus 3 ~C~~Cg~~~~~~-~~~~C~c~~~l~~~y~~~~~~~---~~~~----~~--------~~~~wry~~~-lp~~--~~~v~l~ 63 (442)
T PRK05638 3 KCPKCGREYNSY-IPPFCICGELLEIIYDYSSVDV---RKWK----NR--------DPGVWRYKEL-LPQV--KKIISLG 63 (442)
T ss_pred EeCCCCCCCCCC-CceecCCCCcEEEEecccccch---hhhc----cC--------CCChhhhhhh-CCCc--CCccccC
Confidence 599999999854 4589999999999998765421 1121 11 3689999995 8864 3678999
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
+|+|||++++ +... +|. +||+|+|++|||||||||++.++++.+.+. | ..+|+++||||+|+|+|+||+++|
T Consensus 64 ~G~TPLv~~~-~~~~-~g~-~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~---g--~~~vv~aSsGN~g~alA~~aa~~G 135 (442)
T PRK05638 64 EGGTPLIRAR-ISEK-LGE-NVYIKDETRNPTGSFRDRLATVAVSYGLPY---A--ANGFIVASDGNAAASVAAYSARAG 135 (442)
T ss_pred CCCCcEEccc-chHH-hCC-eEEEEeCCCCCCCChHHHHHHHHHHHHHHc---C--CCEEEEeCCChHHHHHHHHHHHcC
Confidence 9999999984 5555 675 899999999999999999999999987542 3 467999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ +++.|+.+|+.|||+|+.++++++++.+.+++++++.++|+.|++ ||++++|++|+++||++|++
T Consensus 136 ~~~~i~vp~~-~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~--- 211 (442)
T PRK05638 136 KEAFVVVPRK-VDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLYNVTPEYNIIGLEGQKTIAFELWEEIN--- 211 (442)
T ss_pred CCEEEEEeCC-CCHHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHhCCeEecCCCCChhHhhhHHHHHHHHHHHHC---
Confidence 9999999997 799999999999999999999999999999999888899999985 99999999999999999996
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|+++||+++...|++++.||||+||+++|+|+.++|..+.. ....|+++++.++.|....
T Consensus 212 pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~-----~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 212 PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKT-----KCNETKALGLYVKNPVMKE 286 (442)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCC-----CCCCceeeeEeeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999987742 2357899999999999888
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCch
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFT 479 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~ 479 (526)
..+.++++++|.++.|+|+++.++++++.++|+++||+||+++||++++.++|.+.++++||+++||+|+|++
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAKEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 8899999999999999999999999998889999999999999999999999988899999999999999996
No 9
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=6.2e-69 Score=567.05 Aligned_cols=360 Identities=21% Similarity=0.301 Sum_probs=309.3
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcceecccccccccCChHHHHHhhhhhcccccCCCCCCccccccccCCCCCccchhcc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLLDVQHDMGALKHYDGAYWKALFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSA 166 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll~v~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 166 (526)
.|++||++|+ ++..++|+ |||+|++.||++.++. . + .+|||||++| ||..+ . ++
T Consensus 4 ~C~~Cg~~~~-~~~~~~C~~c~g~l~~~y~~~~~~~----------~-------~--~~~~wry~~~-lP~~~--~--~~ 58 (398)
T TIGR03844 4 RCPGCGEVLP-DHYTLSCPLDCGLLRAEYAERQLTL----------R-------D--LPGIFRYYDW-LPVTG--H--LR 58 (398)
T ss_pred EeCCCCCccC-CccccCCCCCCCceEEeeccccccc----------c-------c--CCchhhhHhh-CCCCC--C--CC
Confidence 4999999998 66778996 9999999998652210 0 1 2579999995 88642 2 56
Q ss_pred cccCCCceecccccccccCCCcEEEEecC-------CCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHH
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCG-------ISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAAL 239 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~-------~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~Al 239 (526)
++|.|||++.+.++++ +|+.+||+|+|+ +||||||||||+.++++.+.+. | ...|+++||||||+|+
T Consensus 59 ~~g~tpl~~~~~L~~~-lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~---g--~~~Vv~aSsGN~g~al 132 (398)
T TIGR03844 59 TRGGPVTYKSEGLARE-LGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKER---G--GKTLVVASAGNTGRAF 132 (398)
T ss_pred CCCCCceeehHHHHHH-hCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHc---C--CCEEEEECCCHHHHHH
Confidence 8889999999999887 898899996555 8999999999999999987643 3 4689999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCcCCHHhHHh-HHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-CchhHHhHHHHHHHH
Q 009781 240 SAYCASAGVPSIVFLPANKISIAQLVQ-PIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS-LNSLRLEGQKTAAIE 317 (526)
Q Consensus 240 Aa~aa~~Gi~~~V~vP~~~~s~~k~~q-~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np~~i~G~~T~a~E 317 (526)
|+||+++|++|+||||++. +. ++.+ +..+||+|+.++++||++.+.+++++++.++|..++ .||++++||+|+++|
T Consensus 133 A~~aa~~Gi~~~I~vP~~~-~~-~~~~~~~~~ga~vv~v~g~~d~a~~~a~~~a~~~g~~~~~~~~~p~~ieG~~Ti~~E 210 (398)
T TIGR03844 133 AEVSAITGQPVILVVPKSS-AD-RLWTTEPASSVLLVTVDGDYTDAIALADRIATLPGFVPEGGARNVARRDGMGTVMLD 210 (398)
T ss_pred HHHHHHcCCcEEEEECCCh-HH-HHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHhCCccccCCCCCHHHHhhHHHHHHH
Confidence 9999999999999999973 33 3333 478999999999999999999999998888765554 489999999999999
Q ss_pred HHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCC-CCCCeEEEEecCCCchHHHHHHhCCccccccCC-c-----
Q 009781 318 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLV-DRIPRLVCAQAANANPLYLYYKSGWKDFKPVRA-N----- 390 (526)
Q Consensus 318 I~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~-~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~-~----- 390 (526)
|+||++ ..||+||||+|+|+++.|+|++|+++.++|++ +++||+++||+++|+|++++|++|.....+... .
T Consensus 211 i~eql~-~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~ 289 (398)
T TIGR03844 211 AAVTIG-SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENS 289 (398)
T ss_pred HHHHcC-CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccccc
Confidence 999998 46999999999999999999999999999987 588999999999999999999999754433311 1
Q ss_pred --cccccccccCCCccHH--HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCC
Q 009781 391 --TTFASAIQIGDPVSID--RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTD 465 (526)
Q Consensus 391 --~Tia~~i~i~~P~~~~--~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~ 465 (526)
+|+++++.++.|.... ++++++++++|.++.|+|+||++|+++| +++|+++||++|+++||++++.++|.+.+++
T Consensus 290 ~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~ 369 (398)
T TIGR03844 290 IEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDD 369 (398)
T ss_pred ccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCC
Confidence 6899999988886533 5789999999999999999999999987 5799999999999999999999999998999
Q ss_pred eEEEEECCCCCCchHH
Q 009781 466 KTVVVSTAHGLKFTQS 481 (526)
Q Consensus 466 ~vVvv~TG~g~K~~~~ 481 (526)
+||+++||+|+|+...
T Consensus 370 ~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 370 DILLNITGGGYKRLRE 385 (398)
T ss_pred eEEEEECCcchhhHHh
Confidence 9999999999997544
No 10
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=1e-64 Score=541.41 Aligned_cols=397 Identities=25% Similarity=0.336 Sum_probs=325.0
Q ss_pred eeeccCCCCCCCCCcccCCCceeeC--CCCCcceecccccccccCChHH---HHHh-hhhhcccccCCCCCCcccccccc
Q 009781 81 AKYVPFNAGPSCTESYSLDEVVYRS--QSGGLLDVQHDMGALKHYDGAY---WKAL-FDSRVGKTTWPYGSGVWSKKEWV 154 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~~~~c--~cGGll~v~~d~~~i~~~~~~~---~~~~-~~~~~~~~~~~~~~~iwr~~~~~ 154 (526)
|||+| ||+....++|.++++.| +|||||+ | +.+|+++.+. |+.+ |.+++.+++.+|.
T Consensus 1 M~y~S---TR~~~~~~sf~eail~Gla~DGGLyv-P---~~~P~l~~~~~~~~~~~sy~~~a~~il~~f~---------- 63 (462)
T PRK09225 1 MKYIS---TRGNAPQVSFSEAVLQGLAPDGGLYV-P---EELPKLSAEEIDALLGLSYAELAFEILSAFV---------- 63 (462)
T ss_pred CeeEe---CCCCCCCCCHHHHHhcCCCCCCceEe-C---cccCCCCHHHHHHHhCCCHHHHHHHHHHHhc----------
Confidence 89999 99999999999999998 7999995 4 6788886543 5555 6788888877663
Q ss_pred CCCCCccchhcccccC---------CCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCce
Q 009781 155 LPEIDSDDIVSAFEGN---------SNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVI 225 (526)
Q Consensus 155 lP~~~~~~~vsl~eG~---------TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~ 225 (526)
.+.++.+++..+.+.. +||.++. +++|+.+.+||||||||||+++++...+.+..+ ++ ..
T Consensus 64 ~~~i~~~~l~~~i~~ay~~F~~~~~~pl~~l~---------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~-~~ 132 (462)
T PRK09225 64 GDDIPEDDLKAIIARAYTTFDHPAIAPLVQLD---------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE-KI 132 (462)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCcCccceEEeC---------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC-Cc
Confidence 2344445555544421 4554421 369999999999999999999995544444433 32 57
Q ss_pred EEEEeccchHHHHH-HHHHHhcCCCEEEEcCCCcCCHHhHHhHHhC-CCEE--EEECCCHHHHHHHHHHHHhc------C
Q 009781 226 GVGCASTGDTSAAL-SAYCASAGVPSIVFLPANKISIAQLVQPIAN-GAFV--LSLDTDFDGCMQLIREVTSE------L 295 (526)
Q Consensus 226 ~Vv~aSSGN~g~Al-Aa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~-GA~V--i~v~g~~dd~~~~~~~~~~~------~ 295 (526)
.|+++||||||.|+ ++|+++.|++|+||+|++++|+.|+.||..+ |++| +.|+|+||||++++++++.+ .
T Consensus 133 ~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~ 212 (462)
T PRK09225 133 TILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKL 212 (462)
T ss_pred EEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcC
Confidence 89999999999888 8999999999999999987999999999999 8865 89999999999999998776 6
Q ss_pred CeeeccCCchhHHhHHHHHHHHHHHHcCCC--CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchH
Q 009781 296 PIYLANSLNSLRLEGQKTAAIEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPL 373 (526)
Q Consensus 296 ~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~--~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l 373 (526)
+++.+|++||+|++||+++++|+++|++|. .||+|+||+||||+++|+|+| ++||+ |++|+|++++.| +++
T Consensus 213 ~l~saNSiN~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A----k~mGl--pi~kli~A~n~n-~~l 285 (462)
T PRK09225 213 KLSSANSINIGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA----KKMGL--PIKRLIVATNEN-DVL 285 (462)
T ss_pred ceEEEeccCHHHHHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH----HHcCC--CcceEEEEecCC-hHH
Confidence 799999999999999999999999999873 599999999999999999965 78999 899999998655 899
Q ss_pred HHHHHhCCccccccCCccccccccccCCCccHHH------------H---HHHHHhCCC---------------eEEEeC
Q 009781 374 YLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDR------------A---VYALKNCDG---------------IVEEAT 423 (526)
Q Consensus 374 ~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~------------~---l~~l~~~~g---------------~~v~Vs 423 (526)
.++|.+|.+ .+.....|++++|+|+.|+|++| + ++.++++++ ..+.|+
T Consensus 286 ~~~~~~G~y--~~~~~~~T~s~amdI~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vs 363 (462)
T PRK09225 286 TRFLKTGVY--DPRPTVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVS 363 (462)
T ss_pred HHHHHcCCC--ccCCCCCCcCchhhcCCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEEC
Confidence 999999964 34446789999999999999999 5 333445777 778999
Q ss_pred HHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhhcc--hhhHHHhhhcCC
Q 009781 424 EEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYHSQ--NIKDMACRLANP 500 (526)
Q Consensus 424 d~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~~~--~~~~~~~~~~~~ 500 (526)
|+|++++++++ +++|+++|||||++++|+.++. .+++++|+++||||+||++++.+.... .+|.-.......
T Consensus 364 D~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~-----~~~~~~V~l~Ta~p~Kf~~~v~~a~~~~~~~p~~l~~l~~~ 438 (462)
T PRK09225 364 DEETLATIREVYEEYGYLIDPHTAVAYKAAREYL-----DPGEPGVVLSTAHPAKFPEVVEEALGEEPPLPAALAGLEDR 438 (462)
T ss_pred HHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhh-----CCCCCEEEEecCCccCCHHHHHHhcCCCCCCChhHHHHhcC
Confidence 99999999986 7799999999999999998863 456789999999999999999876532 244422222223
Q ss_pred C---cccCCCHHHHHHHHHHHH
Q 009781 501 P---VSVKADFGSVMDVLKKYL 519 (526)
Q Consensus 501 ~---~~i~~~~~~v~~~~~~~~ 519 (526)
+ ..+++|.+++++.|.+..
T Consensus 439 ~~~~~~~~~~~~~~~~~i~~~~ 460 (462)
T PRK09225 439 PLRSTVLPADFAALKAFLLEHL 460 (462)
T ss_pred cccceecCCCHHHHHHHHHHhh
Confidence 2 367889999999988764
No 11
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=1.5e-63 Score=532.63 Aligned_cols=367 Identities=26% Similarity=0.360 Sum_probs=307.8
Q ss_pred eeccCCCCCCCCCcccCCCceeeC--CCCCcceecccccccccCChHH---HHHh-hhhhcccccCCCCCCccccccccC
Q 009781 82 KYVPFNAGPSCTESYSLDEVVYRS--QSGGLLDVQHDMGALKHYDGAY---WKAL-FDSRVGKTTWPYGSGVWSKKEWVL 155 (526)
Q Consensus 82 ~y~s~~~t~~cg~~~~~~~~~~~c--~cGGll~v~~d~~~i~~~~~~~---~~~~-~~~~~~~~~~~~~~~iwr~~~~~l 155 (526)
||+| ||+-...++|.++++.| +|||||+ | +.+|+++.+. |+.+ +.+++.+++.+|.+
T Consensus 1 ~y~S---TR~~~~~~~f~~ail~Gla~DGGLyv-P---~~~P~~~~~~~~~~~~~sy~~~a~~vl~~f~~---------- 63 (460)
T cd01560 1 KYVS---TRGGNPGVSFSEALLSGLAPDGGLYV-P---EELPKLSAEEIASWSGLSYQELAFEVLSLFIG---------- 63 (460)
T ss_pred Ccee---CCCCCCCCCHHHHHhcCCCCCCceec-C---cccCCCCHHHHHHHhCCCHHHHHHHHHHHHhc----------
Confidence 7999 99999999999999998 7999995 5 5778886543 6655 77888888777631
Q ss_pred CCCCccchhcccccC---------CCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceE
Q 009781 156 PEIDSDDIVSAFEGN---------SNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIG 226 (526)
Q Consensus 156 P~~~~~~~vsl~eG~---------TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~ 226 (526)
++++.+++..+.+.. +||.++. +++|+++++||||||||||+++++...+.+..+...+...
T Consensus 64 ~~i~~~~L~~~i~~ay~~F~~~~~~pl~~l~---------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~ 134 (460)
T cd01560 64 DEIPEDDLKSLIDRAYSFFRHPDIAPLVQLG---------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERIT 134 (460)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCccceEEeC---------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeE
Confidence 344445555544432 4443321 3789999999999999999999986655554333123578
Q ss_pred EEEeccchHHHH-HHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCC---EEEEECCCHHHHHHHHHHHHhc------CC
Q 009781 227 VGCASTGDTSAA-LSAYCASAGVPSIVFLPANKISIAQLVQPIANGA---FVLSLDTDFDGCMQLIREVTSE------LP 296 (526)
Q Consensus 227 Vv~aSSGN~g~A-lAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA---~Vi~v~g~~dd~~~~~~~~~~~------~~ 296 (526)
|+++||||||.| +++|+++.|++|+||+|++++++.|+.||..+|+ +++.|+|+||||++++++++.+ .+
T Consensus 135 Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~ 214 (460)
T cd01560 135 ILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLK 214 (460)
T ss_pred EEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcce
Confidence 999999999988 5999999999999999998899999999999996 9999999999999999998766 47
Q ss_pred eeeccCCchhHHhHHHHHHHHHHHHcCCC---CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchH
Q 009781 297 IYLANSLNSLRLEGQKTAAIEILQQFDWE---VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPL 373 (526)
Q Consensus 297 ~~~~ns~Np~~i~G~~T~a~EI~eQl~~~---~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l 373 (526)
++.+|++||+|++||+++++|+++|+.|. .|++|+||+||||+++|+|+| ++||+ |++|+|++++.| +.+
T Consensus 215 l~saNSiN~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~A----k~mGl--pi~kli~a~n~n-~il 287 (460)
T cd01560 215 LSSANSINWARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYA----KKMGL--PIKKLIVATNEN-DVL 287 (460)
T ss_pred EEEEeccCHHHHHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHH----HHcCC--CCccEEEEeCCC-hHH
Confidence 99999999999999999999999999875 699999999999999999975 67999 999999976544 445
Q ss_pred HHHHHhCCccccccCCccccccccccCCCccHHHHHHHHHhCCC------------------------------eEEEeC
Q 009781 374 YLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDG------------------------------IVEEAT 423 (526)
Q Consensus 374 ~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g------------------------------~~v~Vs 423 (526)
.++|++|.+...+ ....|++++|+|+.|+|++|.+++++++++ ..+.|+
T Consensus 288 ~~~~~~G~y~~~~-~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vs 366 (460)
T cd01560 288 RRFFKTGRYDRRE-SLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVS 366 (460)
T ss_pred HHHHHcCCCcCCC-CCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEEC
Confidence 5688999754332 456899999999999999999999998888 678999
Q ss_pred HHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 424 EEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 424 d~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
|+|++++++.+ +++|+++|||||++++|+.++.++ +++++|+++||||+||++++....
T Consensus 367 D~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~----~~~~~V~l~Ta~p~Kf~~~v~~a~ 426 (460)
T cd01560 367 DEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS----PGTPGVVLSTAHPAKFPEAVKEAL 426 (460)
T ss_pred HHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc----cCCCEEEEecCCcccCHHHHHHhh
Confidence 99999999986 779999999999999999987754 456899999999999999987664
No 12
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.3e-59 Score=491.27 Aligned_cols=345 Identities=35% Similarity=0.592 Sum_probs=302.5
Q ss_pred CCCCccccccccCCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCC
Q 009781 143 YGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNK 222 (526)
Q Consensus 143 ~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~ 222 (526)
+...+|||.+| ||..+...+++|++|+|||++++.+... +|. +||+|+|++|||||||||++.+++..+.+ .|
T Consensus 5 ~~~~~~~~~~~-lp~~~~~~~~~l~~g~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGSfKdR~a~~~l~~a~~---~g- 77 (353)
T PRK07409 5 WPGLIEAYRDR-LPVTDDTPVVTLGEGNTPLIPAPNLSEL-LGV-EVYVKYEGLNPTGSFKDRGMTMAVTKAKE---EG- 77 (353)
T ss_pred CccchHHHHHh-CCCCCccCcccCCCCCCCEEEchhhHHH-hCC-eEEEEecCCCCccchHHHHHHHHHHHHHH---CC-
Confidence 34669999995 9976666779999999999999988776 665 89999999999999999999999998753 33
Q ss_pred CceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC
Q 009781 223 PVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS 302 (526)
Q Consensus 223 ~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 302 (526)
..+|+++||||||+|+|++|+.+|++|+||||++.+++.|+.+|+.+||+|+.++++++++.+.+++++++.++++.|+
T Consensus 78 -~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~~ 156 (353)
T PRK07409 78 -AKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGNFDDALEIVRELAEKYPVTLVNS 156 (353)
T ss_pred -CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCceecCC
Confidence 3589999999999999999999999999999997457889999999999999999999999999999988888889999
Q ss_pred CchhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCc
Q 009781 303 LNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWK 382 (526)
Q Consensus 303 ~Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~ 382 (526)
+||.+++||+|+++||++|++ ..||+||+|+|+||+++|+++||+++...|+.++.+|||+||+++++++. .|.
T Consensus 157 ~n~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~----~g~- 230 (353)
T PRK07409 157 VNPYRIEGQKTAAFEIVDALG-DAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIV----RGE- 230 (353)
T ss_pred CCchhhhhHHHHHHHHHHHhC-CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHh----hCC-
Confidence 999999999999999999997 36999999999999999999999998888876677899999999988775 242
Q ss_pred cccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCC
Q 009781 383 DFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVI 461 (526)
Q Consensus 383 ~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i 461 (526)
+.....|++++++++.|.++.+.+..++++.+.++.|+|+|++++++++ +++|+++||++|+++|+++++.+++.+
T Consensus 231 ---~~~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~ 307 (353)
T PRK07409 231 ---PVKNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKI 307 (353)
T ss_pred ---cCCCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCC
Confidence 1223468999999888999888777788888899999999999999986 679999999999999999998887766
Q ss_pred CCCCeEEEEECCCCCCchHHHHhhhcchhhHHHhhhcCCCcccCCCHHHHHHHH
Q 009781 462 GKTDKTVVVSTAHGLKFTQSKIDYHSQNIKDMACRLANPPVSVKADFGSVMDVL 515 (526)
Q Consensus 462 ~~~~~vVvv~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~ 515 (526)
.++++||+++||+|.||++.+.+.. .+++..+++|+.++.+.+
T Consensus 308 ~~~~~VV~i~tg~g~k~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 350 (353)
T PRK07409 308 PEGSTVVCTLTGNGLKDPDTAIKQA-----------DNEPTTVPPDLDAVAEAL 350 (353)
T ss_pred CCCCcEEEEecCccccchHHHHhhc-----------ccCcccCCCcHHHHHHHh
Confidence 7788999999999999999865333 246667888999987765
No 13
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.1e-60 Score=492.49 Aligned_cols=325 Identities=35% Similarity=0.542 Sum_probs=290.3
Q ss_pred ccccccccCCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceE
Q 009781 147 VWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIG 226 (526)
Q Consensus 147 iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~ 226 (526)
+|||++| ||....++++++++|+|||++++++... +|..+||+|+|++|||||||||++.+++..+.+ .| ..+
T Consensus 1 ~~~~~~~-lp~~~~~~~~~l~~g~TPl~~~~~l~~~-~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~---~g--~~~ 73 (328)
T TIGR00260 1 VWRYREF-LPVTPEKDLVDLGEGVTPLFRSPALVAN-VGIKNLYVLELFHNPTLSFKDRGMAVALTKALE---LG--NDT 73 (328)
T ss_pred Cccchhh-cCCCChhhhhhhccCCccCccchHHHHh-cCCccEEehhhccCCchhhHhhhHHHHHHHHHH---cC--CCE
Confidence 6999995 8976556789999999999999988776 665589999999999999999999999987753 33 358
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCc--
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLN-- 304 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~N-- 304 (526)
|+++||||+|.|+|++|+.+|++|+||||++.+++.|+.+++.+||+|+.++++++++.+.+++++++.+++..++.|
T Consensus 74 vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 153 (328)
T TIGR00260 74 VLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSI 153 (328)
T ss_pred EEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhcCeeecccCCCC
Confidence 999999999999999999999999999999756899999999999999999999999999999998877777788888
Q ss_pred hhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccc
Q 009781 305 SLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDF 384 (526)
Q Consensus 305 p~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~ 384 (526)
|.+++||+|+++||++|+++..||+||+|+|+||+++|++++|++.+.+|+ ++.|++++||+++++++...|.++. .+
T Consensus 154 ~~~~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~-~~~p~v~~Ve~~~~~~~~~~~~~~g-~~ 231 (328)
T TIGR00260 154 PYRLEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGL-DSLPVKRGIQAEGAADIVRAFLESG-QW 231 (328)
T ss_pred CeEeeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCC-ccCCceeEEEcCCCChHHHHHHcCC-Cc
Confidence 999999999999999999865699999999999999999999998877887 6678999999999988888875432 23
Q ss_pred cccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCC
Q 009781 385 KPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGK 463 (526)
Q Consensus 385 ~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~ 463 (526)
.+....+|++++|+++.|.++++.+++++++.+.++.|+|+|++++++++ +++|+++||++|+++||+.++.+++.+.+
T Consensus 232 ~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~ 311 (328)
T TIGR00260 232 EPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADP 311 (328)
T ss_pred CcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCC
Confidence 44444579999999999999999999999999999999999999999986 77999999999999999999988877778
Q ss_pred CCeEEEEECCCCCCchH
Q 009781 464 TDKTVVVSTAHGLKFTQ 480 (526)
Q Consensus 464 ~~~vVvv~TG~g~K~~~ 480 (526)
+++||+++||+|+|+++
T Consensus 312 ~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 312 AERVVCALTGNGLKDPE 328 (328)
T ss_pred CCcEEEEecCCCCCCCC
Confidence 89999999999999853
No 14
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.5e-59 Score=489.90 Aligned_cols=325 Identities=35% Similarity=0.547 Sum_probs=287.9
Q ss_pred CCCccccccccCCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 009781 144 GSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKP 223 (526)
Q Consensus 144 ~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~ 223 (526)
..+||||++| ||..+...+++|++|+|||++++++... +|. +||+|+|++|||||||||++.+++..+.+ .|
T Consensus 3 ~~~~~ry~~~-lp~~~~~~~~~l~~G~TPL~~~~~l~~~-~g~-~l~~K~E~~nptGS~KdR~a~~~i~~a~~---~g-- 74 (351)
T PRK06352 3 KGLLEKYKEY-LPVTDKTPMISLAEGNTPLIPLPNLSKE-LGV-TLYGKYEGLNPTGSFKDRGMVMAVAKAKE---EG-- 74 (351)
T ss_pred CchHHHHHHh-CCCCCCcCccccCCCCCCeeEcHhhHHH-hCC-eEEEEecCCCCccChHHHHHHHHHHHHHH---CC--
Confidence 4579999995 9976666679999999999999998876 675 79999999999999999999999998753 34
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL 303 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~ 303 (526)
..+|+++||||+|+|+|++|+.+|++|+||||++..+..|+.+|+.|||+|+.++++++++.+.+++++++.+++..|++
T Consensus 75 ~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (351)
T PRK06352 75 AEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNSV 154 (351)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCC
Confidence 36899999999999999999999999999999964578899999999999999999999999999999988888889989
Q ss_pred chhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcc
Q 009781 304 NSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKD 383 (526)
Q Consensus 304 Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~ 383 (526)
||.+++||+|+++||++|++ ..||+||+|+|+||+++|++++|+++...+ +++.+|||+|||++++++. .|.
T Consensus 155 n~~~~~G~~t~~~EI~~Q~~-~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~-~~~~~~vi~Vep~g~~~~~----~g~-- 226 (351)
T PRK06352 155 NPYRLEGQKTAAFEICEQLG-SAPDVLAIPVGNAGNISAYWKGFKEWNEAK-ASGLPRMHGFEAEGAAAIV----QGK-- 226 (351)
T ss_pred CccceeeHHHHHHHHHHHcC-CCCCEEEEECCchHHHHHHHHHHHHHHhcC-CCCCCEEEEEeeCCCCHHH----hCC--
Confidence 99999999999999999997 469999999999999999999999988877 5788999999999987754 343
Q ss_pred ccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCC
Q 009781 384 FKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIG 462 (526)
Q Consensus 384 ~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~ 462 (526)
+....+|+++++.++.|..+......++++++.++.|+|+|+++|++++ +++|+++||++|+++||++++.+++.+.
T Consensus 227 --~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~ 304 (351)
T PRK06352 227 --PIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIK 304 (351)
T ss_pred --CcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCC
Confidence 1223468888988888887776667777888889999999999999987 6799999999999999999988877677
Q ss_pred CCCeEEEEECCCCCCchHHHHhhh
Q 009781 463 KTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 463 ~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
++++||+++||+|.||++.+.+++
T Consensus 305 ~~~~Vv~v~tg~G~~~~~~~~~~~ 328 (351)
T PRK06352 305 KGETVVCVFTGNGLKDPDTAMSVH 328 (351)
T ss_pred CCCcEEEEeCCCCcCChHHHHhhc
Confidence 788999999999999999876665
No 15
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.9e-57 Score=474.40 Aligned_cols=343 Identities=34% Similarity=0.502 Sum_probs=293.9
Q ss_pred CCCccccccccCCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 009781 144 GSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKP 223 (526)
Q Consensus 144 ~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~ 223 (526)
..++|||.+| ||..+....+++.+|+|||++++.+.+. +|. +||+|+|++|||||||||++.+++..+.+ .|
T Consensus 3 ~~~~~ry~~~-lp~~~~~~~~~l~~G~TPl~~l~~l~~~-~g~-~i~~K~E~~nptGS~KdR~a~~~i~~a~~---~g-- 74 (352)
T PRK06721 3 KGLLNQYASY-LPVNENTPDVSLMEGNTPLIPLLNISKQ-LGI-QLYGKYEGANPTGSFKDRGMVMAVAKAKE---EG-- 74 (352)
T ss_pred cchHHHHHHh-CCCCCCCCccccCcCCCCeeEchhhHHH-hCC-eEEEEecCCCCccchHHHHHHHHHHHHHH---CC--
Confidence 4569999995 9965555568999999999999998876 675 89999999999999999999999998753 34
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL 303 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~ 303 (526)
..+|+++||||+|.|+|++|+++|++|+||||++..++.|+.+|+.+||+|+.++++++++.+.+++++++.++++.|+.
T Consensus 75 ~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (352)
T PRK06721 75 SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSV 154 (352)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceeccCC
Confidence 46899999999999999999999999999999974577899999999999999999999999999999998888999989
Q ss_pred chhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHH-cCCCCCCCeEEEEecCCCchHHHHHHhCCc
Q 009781 304 NSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKE-LGLVDRIPRLVCAQAANANPLYLYYKSGWK 382 (526)
Q Consensus 304 Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~-~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~ 382 (526)
||.+++||+|+++||++|++. .||+||+|+|+||+++|+++||.++.+ .|. |.+|||+||+++++++.+ |.
T Consensus 155 n~~~~~G~~t~~~Ei~eq~~~-~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~--~~~~vigVep~~~~~~~~----g~- 226 (352)
T PRK06721 155 NPYRIEGQKTAAFEICDQLQR-APDVLAIPVGNAGNITAYWKGFCEYEKEKGY--KKPRIHGFEAEGAAAIVK----GH- 226 (352)
T ss_pred CchhhhhhhhHHHHHHHHhCC-CCCEEEEeCCchHHHHHHHHHHHHHHHhcCC--CCCeEEEEecCCCChHhh----CC-
Confidence 999999999999999999973 699999999999999999999987654 443 678999999999887653 32
Q ss_pred cccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCC
Q 009781 383 DFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVI 461 (526)
Q Consensus 383 ~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i 461 (526)
......|+++++.++.|..+...+..++...+.++.|+|+|++++++++ +++|+++||++|+++||++++.+++.+
T Consensus 227 ---~~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~ 303 (352)
T PRK06721 227 ---VIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKI 303 (352)
T ss_pred ---cCCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCC
Confidence 1223468899999888888777777778888999999999999999986 779999999999999999999888777
Q ss_pred CCCCeEEEEECCCCCCchHHHHhhhcchhhHHHhhhcCCC-cccCCCHHHHHHHHHH
Q 009781 462 GKTDKTVVVSTAHGLKFTQSKIDYHSQNIKDMACRLANPP-VSVKADFGSVMDVLKK 517 (526)
Q Consensus 462 ~~~~~vVvv~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~v~~~~~~ 517 (526)
.++++||+++||+|.||.+.+.+ ....+ ..+.++.+++++.++.
T Consensus 304 ~~~~~Vv~v~~g~g~k~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 348 (352)
T PRK06721 304 KKGETVVAVLTGNGLKDPDIAIS------------SNTLDIASVSNNIEQIKEHIKG 348 (352)
T ss_pred CCCCeEEEEeCCCCcCchHHHhh------------hccCCcccCCccHHHHHHHHHH
Confidence 88899999999999999988531 11111 2356688887776654
No 16
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2e-57 Score=469.44 Aligned_cols=322 Identities=46% Similarity=0.741 Sum_probs=287.8
Q ss_pred ccccccccCCCCCccchhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceE
Q 009781 147 VWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIG 226 (526)
Q Consensus 147 iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~ 226 (526)
+|||.+| ||.. ....++|++|+|||++++++++. +|..+||+|+|++|||||||||++.+++..+.+ .| ..+
T Consensus 1 ~~~~~~~-~~~~-~~~~~~l~~g~TPl~~~~~l~~~-~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~---~g--~~~ 72 (324)
T cd01563 1 LWRYREL-LPVT-EDDIVSLGEGNTPLVRAPRLGER-LGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKE---LG--VKA 72 (324)
T ss_pred Cccchhh-CCCC-CCCcccCCCCCCceeechhhHhh-cCCCceEEEecCCCCcccHHHhhHHHHHHHHHH---cC--CCE
Confidence 5999995 8954 34568999999999999998876 554589999999999999999999999998754 23 468
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-Cch
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS-LNS 305 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np 305 (526)
|+++|+||+|.|+|++|+.+|++|+|+||++ .++.|+.+|+.+||+|+.++++++++.+.+++++++. ++++++ .||
T Consensus 73 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~~~n~ 150 (324)
T cd01563 73 VACASTGNTSASLAAYAARAGIKCVVFLPAG-KALGKLAQALAYGATVLAVEGNFDDALRLVRELAEEN-WIYLSNSLNP 150 (324)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCceEEEEeCC-CCHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHhc-CeeccCCCCc
Confidence 9999999999999999999999999999997 6899999999999999999999999999999998877 555554 689
Q ss_pred hHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcccc
Q 009781 306 LRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFK 385 (526)
Q Consensus 306 ~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~ 385 (526)
.+++||+|+++||++|+++..||+||+|+|+||+++|++++|+++..+|++++.+|||+||+.++++++++++.|.....
T Consensus 151 ~~~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~ 230 (324)
T cd01563 151 YRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIE 230 (324)
T ss_pred ceecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccC
Confidence 99999999999999999753599999999999999999999999999998878899999999999999999998864444
Q ss_pred ccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCC
Q 009781 386 PVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKT 464 (526)
Q Consensus 386 ~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~ 464 (526)
+.....|++++++++.|.++++.++.++++.+.++.|+|+|++++++++ +++|+++||++|++++|++++.+++.+.++
T Consensus 231 ~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~ 310 (324)
T cd01563 231 PVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKG 310 (324)
T ss_pred cCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCC
Confidence 5556689999999988988888888888899999999999999999986 678999999999999999999888766778
Q ss_pred CeEEEEECCCCCCc
Q 009781 465 DKTVVVSTAHGLKF 478 (526)
Q Consensus 465 ~~vVvv~TG~g~K~ 478 (526)
++||+++||+|.|+
T Consensus 311 ~~Vv~v~tg~g~~~ 324 (324)
T cd01563 311 ERVVVVLTGHGLKD 324 (324)
T ss_pred CcEEEEeCCCccCC
Confidence 89999999999985
No 17
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=7.6e-53 Score=448.66 Aligned_cols=330 Identities=16% Similarity=0.142 Sum_probs=276.0
Q ss_pred ccccccccCCCCCccchhcccccCCCceecccccccccCC-------CcEEEEecCCCC-CCchhhhhHHHHHHHHHH--
Q 009781 147 VWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQM-------NDLWVKHCGISH-TGSFKDLGMTVLVSQVNR-- 216 (526)
Q Consensus 147 iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~-------~~l~lK~E~~nP-TGSFKDRga~~~v~~a~~-- 216 (526)
||+|.+ +||.+..+..++++++.|||++++.++.. +|+ .+||+|+|++|| ||||||||+.+++..+..
T Consensus 53 i~~~~~-~~~~~~~~~~~~~~~~~TPL~~~~~l~~~-~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~ 130 (441)
T PRK02991 53 LKRFAP-YLAKAFPETAATGGIIESPLVAIPAMQKA-LEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKL 130 (441)
T ss_pred HHhhhh-hhhhhCccccccCCccCCCceehHHHHHH-hcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHH
Confidence 455666 58877667788999999999999988776 653 489999999999 999999999999876532
Q ss_pred HHhcCC---C----------------ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEE
Q 009781 217 LKRMNK---P----------------VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSL 277 (526)
Q Consensus 217 ~~~~g~---~----------------~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v 277 (526)
..+.|. + ..+|+++||||||.|+|++|+++|++|+||||++ +++.|+.+|+.|||+|+.+
T Consensus 131 a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~-a~~~K~~~ir~~GAeVi~~ 209 (441)
T PRK02991 131 ALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSAD-ARQWKKDKLRSHGVTVVEY 209 (441)
T ss_pred HHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHhCCCEEEEE
Confidence 122331 0 1379999999999999999999999999999997 8999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcC-CeeeccCC-chhHHhHHHHHHHHHHHHcCC-------CCCcEEEEeCCchhHHHHHHHHHH
Q 009781 278 DTDFDGCMQLIREVTSEL-PIYLANSL-NSLRLEGQKTAAIEILQQFDW-------EVPDWVIVPGGNLGNIYAFYKGFQ 348 (526)
Q Consensus 278 ~g~~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~-------~~pd~VvVP~G~Gg~l~G~~kgf~ 348 (526)
+++++++.+.+++++++. ++|++|++ ||..++||+|+++||++|+++ +.||+||||+|+||+++|++++|+
T Consensus 210 ~~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk 289 (441)
T PRK02991 210 EGDYGVAVEEGRKAAESDPNCYFIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLK 289 (441)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEeCCCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHH
Confidence 999999999999998876 57888876 478899999999999999974 247899999999999999999998
Q ss_pred HHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcccccc----CCccccccccccCCCccHHHHHHHHHhCCCeEEEeCH
Q 009781 349 MCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPV----RANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATE 424 (526)
Q Consensus 349 ~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~----~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd 424 (526)
++. .+.+|||+|||+++++++.+++.|+...... ....|+++++.++.|... .+..++++.+.++.|+|
T Consensus 290 ~~~-----~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~--~~~~~~~~vd~~v~VsD 362 (441)
T PRK02991 290 LAF-----GDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGF--VGRAMERLLDGVYTVSD 362 (441)
T ss_pred Hhc-----CCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchh--HHHHHHHhCCeEEEECH
Confidence 652 1457999999999999999999986321111 124699999999988765 46667888899999999
Q ss_pred HHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcC------CCC---CCCeEEEEECCCCCCchHHHHhhh
Q 009781 425 EELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKG------VIG---KTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 425 ~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g------~i~---~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
+|+++++++| +++|+++||++|+++||+.++.+++ .++ .+++||+++||+..+..+...+|.
T Consensus 363 ~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~~~~~~ 434 (441)
T PRK02991 363 ETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEEMEQYL 434 (441)
T ss_pred HHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHHHHHHH
Confidence 9999999986 6799999999999999998765532 234 578999999999999888776665
No 18
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.2e-51 Score=425.62 Aligned_cols=295 Identities=24% Similarity=0.393 Sum_probs=257.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-|+|||++++++... +|..+||+|+|++|||||||||++.+++..+.+ .| .++|+++|+||+|.|+|++|+.+|
T Consensus 13 ~g~TPL~~~~~l~~~-~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~---~g--~~~lv~aSsGN~g~alA~~aa~~G 86 (319)
T PRK06381 13 PGGTPLLRARKLEEE-LGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMR---LG--YSGITVGTCGNYGASIAYFARLYG 86 (319)
T ss_pred CCCCceeEhHhhHHh-cCCceEEEEecCCCCccCcHHHHHHHHHHHHHH---cC--CCEEEEeCCcHHHHHHHHHHHHcC
Confidence 689999999999876 776789999999999999999999999998753 34 468999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC--ch-hHHhHHHHHHHHHHHHcCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL--NS-LRLEGQKTAAIEILQQFDW 324 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~--Np-~~i~G~~T~a~EI~eQl~~ 324 (526)
++|+||||.+ .+..|+.+|+.|||+|+.++++++++.+.+++++++.++|+.|+. || ++++||+|+++||++|++
T Consensus 87 ~~~~ivvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~- 164 (319)
T PRK06381 87 LKAVIFIPRS-YSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGIYDANPGSVNSVVDIEAYSAIAYEIYEALG- 164 (319)
T ss_pred CcEEEEECCC-CCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhC-
Confidence 9999999997 788999999999999999999999999999999888888988865 76 789999999999999998
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCC--
Q 009781 325 EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDP-- 402 (526)
Q Consensus 325 ~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P-- 402 (526)
..||+||+|+|+||+++|++++|++++.+|++++.+|||+||+.+++++..++..|.....+.. ..++++ ..+..|
T Consensus 165 ~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~-~~~i~~-~~~~~~~~ 242 (319)
T PRK06381 165 DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLE-VDEIRE-TAVNEPLV 242 (319)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCC-cchhhh-cccCCCcc
Confidence 3699999999999999999999999999999889999999999999999999999865433332 234443 112222
Q ss_pred ----ccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCC
Q 009781 403 ----VSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAH 474 (526)
Q Consensus 403 ----~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~ 474 (526)
......+..++++.+.++.|+|+|++++++++ +++|+++||++|+++||++++.+++.+ +++||+++||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~--~~~vv~i~tGg 317 (319)
T PRK06381 243 SYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGV--NDNVVAVITGR 317 (319)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC--CCcEEEEecCC
Confidence 34456778888999999999999999999987 789999999999999999999988754 37999999995
No 19
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.3e-51 Score=424.55 Aligned_cols=303 Identities=18% Similarity=0.226 Sum_probs=259.2
Q ss_pred CCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCCC
Q 009781 170 NSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVP 249 (526)
Q Consensus 170 ~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~ 249 (526)
+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+.+. .+.++|+++|+||+|.|+|++|+++|++
T Consensus 1 ~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~--~~~~~vv~aSsGN~g~alA~~a~~~G~~ 76 (316)
T cd06448 1 KTPLIESTALSKT-AGC-NVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL--NECVHVVCSSGGNAGLAAAYAARKLGVP 76 (316)
T ss_pred CCCccccchhhHh-hCC-eEEEEeccCCCcCChHHHHHHHHHHHHHHhhc--ccCCeEEEeCCcHHHHHHHHHHHHcCCC
Confidence 5999999998876 664 89999999999999999999999998865432 2246899999999999999999999999
Q ss_pred EEEEcCCCcCCHHhHHhHHhCCCEEEEECCC-HHHHHHHHHHHHhcC-CeeeccCC-chhHHhHHHHHHHHHHHHcCCC-
Q 009781 250 SIVFLPANKISIAQLVQPIANGAFVLSLDTD-FDGCMQLIREVTSEL-PIYLANSL-NSLRLEGQKTAAIEILQQFDWE- 325 (526)
Q Consensus 250 ~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~-~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~- 325 (526)
|+||+|.+ +++.|+.+|+.|||+|+.++++ ++++.+.+++++++. ++++++++ ||..++|++|+++||++|+++.
T Consensus 77 ~~iv~p~~-~~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~ 155 (316)
T cd06448 77 CTIVVPES-TKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQE 155 (316)
T ss_pred EEEEECCC-CCHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHHHHccccC
Confidence 99999997 7899999999999999999998 888888888888876 77888875 8999999999999999999862
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.||+||+|+|+||+++|++++|+++ ++ +.+|||+|||++++++..+++.|.. ......+|+++++.. |...
T Consensus 156 ~~D~vv~~vG~Gg~~~Gv~~~~k~~---~~--~~~~ii~Vep~g~~~~~~~~~~g~~--~~~~~~~t~a~glg~--~~~~ 226 (316)
T cd06448 156 KVDAIVCSVGGGGLLNGIVQGLERN---GW--GDIPVVAVETEGAHSLNASLKAGKL--VTLPKITSVATSLGA--KTVS 226 (316)
T ss_pred CCCEEEEEeCchHHHHHHHHHHHhc---CC--CCCEEEEEeeCCChHHHHHHHcCCc--EecCCCCchhhccCC--CCcC
Confidence 5999999999999999999999864 33 5579999999999999999998853 122234689998854 4444
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHH-----HHHcCCCCCCCeEEEEECCCCCCch
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIK-----LRCKGVIGKTDKTVVVSTAHGLKFT 479 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~-----l~~~g~i~~~~~vVvv~TG~g~K~~ 479 (526)
...++.+++..+.++.|+|+|+++++++| +++|+++||++|+++||+++ +.+++.+.++++||+++||++.+++
T Consensus 227 ~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~ 306 (316)
T cd06448 227 SQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITL 306 (316)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCH
Confidence 55677778888999999999999999986 78999999999999999974 4455677889999999999988777
Q ss_pred HHHHhhh
Q 009781 480 QSKIDYH 486 (526)
Q Consensus 480 ~~~~~~~ 486 (526)
+.+.+|.
T Consensus 307 ~~~~~~~ 313 (316)
T cd06448 307 EQLKEYK 313 (316)
T ss_pred HHHHHHH
Confidence 7655443
No 20
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-51 Score=421.66 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=259.9
Q ss_pred cccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHH
Q 009781 165 SAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 165 sl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
.-..|+|||++++++++. +|. +||+|+|++|||||||||++.+++..+.+. +.....|+++|+||+|.|+|++|+
T Consensus 16 ~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~Rga~~~l~~a~~~---~~~~~~vv~aSsGN~g~alA~~a~ 90 (322)
T PRK06110 16 YAAMPPTPQYRWPLLAER-LGC-EVWVKHENHTPTGAFKVRGGLVYFDRLARR---GPRVRGVISATRGNHGQSVAFAAR 90 (322)
T ss_pred hCcCcCCCcccchhHHHH-hCC-eEEEEeccCCCcCCcHHHHHHHHHHHhhhh---cCCCceEEEECCCHHHHHHHHHHH
Confidence 345699999999999876 675 899999999999999999999999877542 222356999999999999999999
Q ss_pred hcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHHHHHHHcCC
Q 009781 245 SAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDW 324 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~ 324 (526)
++|++|+||||++ .++.|+.+++.|||+|+.++++++++.+.+++++++.++|++|++||..++||+|+++||++|++
T Consensus 91 ~~G~~~~ivvp~~-~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~- 168 (322)
T PRK06110 91 RHGLAATIVVPHG-NSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPSFHPDLVRGVATYALELFRAVP- 168 (322)
T ss_pred HcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCCCCChHHhccchHHHHHHhhCC-
Confidence 9999999999997 68889999999999999999999999999999998888999999999999999999999999998
Q ss_pred CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCcc
Q 009781 325 EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVS 404 (526)
Q Consensus 325 ~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~ 404 (526)
.+|+||+|+|+||+++|++++|+++ + +.+|||+|||++++++..+++.|+. .+.+...|+++++.+..|.
T Consensus 169 -~~D~vv~pvG~Gg~~~Gv~~~~k~~---~---~~~~vi~Vep~~~~~~~~~~~~g~~--~~~~~~~t~a~gl~~~~~~- 238 (322)
T PRK06110 169 -DLDVVYVPIGMGSGICGAIAARDAL---G---LKTRIVGVVSAHAPAYALSFEAGRV--VTTPVATTLADGMACRTPD- 238 (322)
T ss_pred -CCCEEEEecCHHHHHHHHHHHHHHh---C---CCCEEEEEeeCCChHHHHHHHcCCc--ccCCCCCCcccccCCCCcc-
Confidence 5899999999999999999998753 3 6689999999999999999999863 2333457999998766554
Q ss_pred HHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHH
Q 009781 405 IDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKI 483 (526)
Q Consensus 405 ~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~ 483 (526)
...++.+++..+.++.|+|+|++++++++ +++|+++||++|+++++++++.+. .++++||+|+|| |..+++.+.
T Consensus 239 -~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~---~~~~~Vv~i~tG-gn~d~~~~~ 313 (322)
T PRK06110 239 -PEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER---LAGKRVGLVLSG-GNIDRAVFA 313 (322)
T ss_pred -HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh---hCCCcEEEEECC-CCCCHHHHH
Confidence 33566678889999999999999999986 779999999999999999987654 257899999999 567887765
Q ss_pred hhh
Q 009781 484 DYH 486 (526)
Q Consensus 484 ~~~ 486 (526)
++.
T Consensus 314 ~~~ 316 (322)
T PRK06110 314 RVL 316 (322)
T ss_pred HHH
Confidence 443
No 21
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.1e-50 Score=417.80 Aligned_cols=289 Identities=18% Similarity=0.156 Sum_probs=248.0
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||++++++... +|. +||+|+|++|||||||||++.+++..+... .+ ..+|+++||||+|.|+|++|+++|
T Consensus 17 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~K~R~a~~~i~~~~~~--~~--~~~vv~aSsGN~g~alA~~a~~~G 90 (317)
T TIGR02991 17 VEETPLVESPSLSEL-CGV-PVHLKLEHRQTTGSFKLRGATNAVLSLSDT--QR--AAGVVAASTGNHGRALAYAAAEEG 90 (317)
T ss_pred CCCCCceechhhHHh-hCC-eEEEEeccCCCCCCcHHHHHHHHHHhhhHh--cc--CCeEEEECCCHHHHHHHHHHHHhC
Confidence 489999999998876 675 799999999999999999999999876432 12 357999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ +++.|+.+|+.|||+|+.++++++++.+.+++++++.++++++++ ||.+++||+|+++||++|++ .
T Consensus 91 ~~~~v~~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~a~Ei~~q~~--~ 167 (317)
T TIGR02991 91 VRATICMSEL-VPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQGTLGLEVVEQMP--D 167 (317)
T ss_pred CCEEEEcCCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEeeCCCCChHHHhhHHHHHHHHHHhCC--C
Confidence 9999999997 788999999999999999999999999999999988888999986 89999999999999999997 4
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
+|+||+|+|+||+++|++++|+++. |.+|||+||++++++++.+++.|+. .......|+++++..+.+....
T Consensus 168 ~d~vvv~~G~Gg~~~Gi~~~~k~~~------p~~~vigvep~~~~~~~~s~~~g~~--~~~~~~~tia~~l~~g~~~~~~ 239 (317)
T TIGR02991 168 LATVLVPLSGGGLASGVAMAVKAAR------PDTRVIGVSMERGAAMKASLQAGRP--VLVAELPTLADSLGGGIGLDNR 239 (317)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHhC------CCCEEEEEEECCchHHHHHHHcCCc--ccCCCCCChhhhhhhccCCCCH
Confidence 8999999999999999999998752 6789999999999999999998853 2234557899987533221112
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCC
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLK 477 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K 477 (526)
..+..+++..+.++.|+|+|++++++++ +++|+++||++|+++|++.+ +.+.++++||+|+||++..
T Consensus 240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~----~~~~~~~~vvvvltG~n~~ 307 (317)
T TIGR02991 240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLA----GKIKNPGPCAVIVSGRNID 307 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHc----CccccCCcEEEEeCCCCCC
Confidence 2345567788899999999999999986 77999999999999999873 3345678999999999874
No 22
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.3e-50 Score=438.68 Aligned_cols=328 Identities=17% Similarity=0.170 Sum_probs=272.3
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
.+.|||++++.+++. +|. +||+|+|++||||||||||+.+++..+.... . .++||++|+||||.++|++|+++|
T Consensus 35 v~~TPL~~~~~Ls~~-~g~-~IylK~E~lqptGSfK~RGA~n~i~~l~~~~--~--~~GVV~aSaGNha~gvA~aA~~lG 108 (521)
T PRK12483 35 ARETPLQRAPNLSAR-LGN-QVLLKREDLQPVFSFKIRGAYNKMARLPAEQ--L--ARGVITASAGNHAQGVALAAARLG 108 (521)
T ss_pred cCCCCeeEchhhhHh-hCC-EEEEEEcCCCCCCchHHHHHHHHHHHhHHHH--h--cCcEEEECCCHHHHHHHHHHHHhC
Confidence 478999999999887 775 8999999999999999999999999875321 1 246999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||.+ ++..|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+|+||++|+++ .
T Consensus 109 i~~~IvmP~~-tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~pfdd~~viaGqgTig~EI~eQ~~~-~ 186 (521)
T PRK12483 109 VKAVIVMPRT-TPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHPG-P 186 (521)
T ss_pred CCEEEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeCCCCChHHHHHHHHHHHHHHHHhCC-C
Confidence 9999999997 789999999999999999999999999999999999999999987 799999999999999999985 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||||+|+||+++|++.+|+++ .|.+|||||||++++++..+++.|+. ...+...|+++++.+..+..
T Consensus 187 ~D~VvvpvGgGGliaGia~~~K~~------~p~vkVIGVep~~a~~~~~sl~~g~~--~~~~~~~t~adGiav~~~g~-- 256 (521)
T PRK12483 187 LDAIFVPVGGGGLIAGIAAYVKYV------RPEIKVIGVEPDDSNCLQAALAAGER--VVLGQVGLFADGVAVAQIGE-- 256 (521)
T ss_pred CCEEEEecCccHHHHHHHHHHHHh------CCCCEEEEEEeCCCchhhHHHhcCCc--ccCCCCCceeceeccCCCCH--
Confidence 999999999999999999988854 27789999999999999999998863 23345679999998877643
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDY 485 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~ 485 (526)
..+..++++.+.++.|+|+|+.+|++++ +++|+++||++|+++||++++.+++.+ ++++||+|+||++..+ +.+.+.
T Consensus 257 ~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~-~g~~VV~IlsGgNid~-~~l~~i 334 (521)
T PRK12483 257 HTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGI-EGQTLVAIDSGANVNF-DRLRHV 334 (521)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCH-HHHHHH
Confidence 4567778889999999999999999986 789999999999999999998777655 5789999999998764 333222
Q ss_pred hcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 486 HSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
....+.. ..+.......++...+++.+++.
T Consensus 335 ~~r~l~~-~~r~~~~~v~~~d~pG~l~~~~~ 364 (521)
T PRK12483 335 AERAELG-EQREAIIAVTIPEQPGSFKAFCA 364 (521)
T ss_pred HHHHHHh-cCCEEEEEEEeCCCCCHHHHHHH
Confidence 2100000 00111122456666666666554
No 23
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-50 Score=426.92 Aligned_cols=327 Identities=17% Similarity=0.207 Sum_probs=266.8
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.... + .++||++|+||||.++|++|+++|
T Consensus 18 i~~TPl~~~~~Ls~~-~g~-~iylK~E~lqptGSfK~RgA~n~i~~l~~~~--~--~~gVV~aSaGNhg~avA~aa~~~G 91 (403)
T PRK08526 18 VNKTPFAYAPFLSKI-SGA-EVYLKKENLQITGAYKIRGAYNKIANLSEEQ--K--QHGVIAASAGNHAQGVAISAKKFG 91 (403)
T ss_pred CCCCCccchHHHHHH-hCC-eEEEEecCCCCCCCCHHHHHHHHHHhccHhh--c--CCEEEEECccHHHHHHHHHHHHcC
Confidence 489999999999876 675 8999999999999999999999998875431 1 357999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ ++..|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+|+||++|++ .
T Consensus 92 i~~~IvmP~~-~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p~~~~~~i~G~gtia~EI~eq~~--~ 168 (403)
T PRK08526 92 IKAVIVMPEA-TPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIALEMLDEIS--D 168 (403)
T ss_pred CCEEEEEcCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCCCCCHHHHhhhHHHHHHHHHhcC--C
Confidence 9999999997 788999999999999999999999999999999999899999987 68999999999999999997 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|+++ .|.+|||+||+++++++..+++.|+. .+.....|+++++.+..|..
T Consensus 169 ~D~vvvpvGgGGl~aGia~~~k~~------~p~~kvigVep~~~~~~~~s~~~g~~--~~~~~~~tiadgiav~~~~~-- 238 (403)
T PRK08526 169 LDMVVVPVGGGGLISGIASAAKQI------NPNIKIIGVGAKGAPAMYESFHAKKI--INSKSVRTIADGIAVRDASP-- 238 (403)
T ss_pred CCEEEEecChHHHHHHHHHHHHHh------CCCCEEEEEEECCCChHHHHHHcCCc--ccCCCCCceeccccCCCCCH--
Confidence 999999999999999999999864 26789999999999999999998852 23455689999998876543
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDY 485 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~ 485 (526)
..+..+++..+.++.|+|+|+.+|++++ +++|+++||++|+++||+++ ..+.+.++++||+++||+ ..+.+.+.+.
T Consensus 239 ~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~--~~~~~~~~~~Vv~ilsGG-nid~~~~~~i 315 (403)
T PRK08526 239 INLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLH--QKIDLKKGKKIGVVLSGG-NIDVQMLNII 315 (403)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHh--CccccccCCeEEEEECCC-CCCHHHHHHH
Confidence 2344455667789999999999999985 88999999999999999875 233345678999999995 4556654332
Q ss_pred hcchhhHHHhhhcCCCcccCCCHHHHHHHHHH
Q 009781 486 HSQNIKDMACRLANPPVSVKADFGSVMDVLKK 517 (526)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~ 517 (526)
..-.+.. ..+.......+++..+++.+++..
T Consensus 316 ~~~~l~~-~~r~~~~~~~~~d~pg~l~~~~~~ 346 (403)
T PRK08526 316 IEKGLIK-SYRKMKLHVTLVDKPGALMGLTDI 346 (403)
T ss_pred HHHHHHh-cCCEEEEEEEcCCCCCHHHHHHHH
Confidence 2111100 011112234666666766665553
No 24
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=3.7e-50 Score=425.48 Aligned_cols=307 Identities=18% Similarity=0.169 Sum_probs=260.2
Q ss_pred cccCCCceecccccccccCCCcEEEEecCC-CCCCchhhhhHHHHHHHHHHHHhcCC-------------------CceE
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGI-SHTGSFKDLGMTVLVSQVNRLKRMNK-------------------PVIG 226 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~-nPTGSFKDRga~~~v~~a~~~~~~g~-------------------~~~~ 226 (526)
..+.|||+++++++.. +|+.+||+|+|++ ||||||||||+.+.+..+... +.+. +..+
T Consensus 41 ~~~~TPL~~~~~l~~~-~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 118 (399)
T PRK08206 41 GYAPTPLVALPDLAAE-LGVGSILVKDESYRFGLNAFKALGGAYAVARLLAE-KLGLDISELSFEELTSGEVREKLGDIT 118 (399)
T ss_pred CCCCCCCcchHHHHHH-hCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHH-HhCCCcccCCHHHhhhhHHHHhccCCE
Confidence 3478999999999887 7866899999997 699999999999988887532 1221 1136
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeecc-----
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLAN----- 301 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n----- 301 (526)
|+++|+||||+|+|++|+++|++|+||||++ +++.|+.+|+.|||+|+.++++++++.+.+++++++.++|+++
T Consensus 119 vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~-~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~~~~~ 197 (399)
T PRK08206 119 FATATDGNHGRGVAWAAQQLGQKAVIYMPKG-SSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQDTAWE 197 (399)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecCcccc
Confidence 9999999999999999999999999999997 7899999999999999999999999999999998888888776
Q ss_pred CC---chhHHhHHHHHHHHHHHHcCCC--CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHH
Q 009781 302 SL---NSLRLEGQKTAAIEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLY 376 (526)
Q Consensus 302 s~---Np~~i~G~~T~a~EI~eQl~~~--~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a 376 (526)
++ +|..++||+|+++||++|+++. .||+||||+|+||+++|++++|+++.. ++.+|||+|||+++++++++
T Consensus 198 ~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~----~~~~kii~Vep~gs~~l~~s 273 (399)
T PRK08206 198 GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYG----EQRPHFVVVEPDQADCLYQS 273 (399)
T ss_pred CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcC----CCCCEEEEECCCCCchHHHH
Confidence 33 3778999999999999999852 599999999999999999999986531 25789999999999999999
Q ss_pred HHhCCccccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHHH-----hcCCeecchHHHHHHH
Q 009781 377 YKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQAD-----STGMFVCPHTGVALSA 451 (526)
Q Consensus 377 ~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l~-----~~Gi~veP~sA~alAa 451 (526)
++.|.....+ ....|+++++.++.|.. ..+..++++.+.++.|+|+|+++++++|. ++|+++||++|+++||
T Consensus 274 ~~~g~~~~~~-~~~~tia~gl~~~~~~~--~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa 350 (399)
T PRK08206 274 AVDGKPVAVT-GDMDTIMAGLACGEPNP--LAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGA 350 (399)
T ss_pred HHcCCcEEeC-CCCCceeccCCCCCcCH--HHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHH
Confidence 9988633222 22368999998888775 35666788899999999999999999874 5899999999999999
Q ss_pred HHHHHHc---------CCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 452 LIKLRCK---------GVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 452 l~~l~~~---------g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
++++.+. +.+.++++||+|+|| |.|+++...+
T Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltg-G~~d~~~~~~ 391 (399)
T PRK08206 351 LAALMTDPDYQELREKLGLDEDSRVLLISTE-GDTDPDRYRE 391 (399)
T ss_pred HHHHHhcchhhHHHHhcCCCCCCEEEEEECC-CCCCHHHHHH
Confidence 9876532 777889999999995 7788877543
No 25
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.6e-50 Score=437.74 Aligned_cols=293 Identities=15% Similarity=0.182 Sum_probs=261.0
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
.-+.|||+++++++.. +|. +||+|+|++||||||||||+.+++..+... .. ..+|+++|+||||.++|++|+++
T Consensus 106 ~i~~TPL~~s~~LS~~-~g~-~IylK~E~lqptGSFK~RGA~n~I~~L~~e--~~--~~GVV~aSaGNhAqgvA~aA~~l 179 (591)
T PLN02550 106 VAIESPLQLAKKLSER-LGV-KVLLKREDLQPVFSFKLRGAYNMMAKLPKE--QL--DKGVICSSAGNHAQGVALSAQRL 179 (591)
T ss_pred cccCChhhhhHHhhHh-hCC-EEEEEEcCCCCCCcHHHHHHHHHHHHHHHh--cC--CCCEEEECCCHHHHHHHHHHHHc
Confidence 3578999999999887 775 899999999999999999999999987532 11 34699999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
|++|+||||++ ++..|+.+++.|||+|+.++++++++.+.+++++++.++++++++ ||..++||+|+|+||++|+++
T Consensus 180 Gika~IvmP~~-tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e~g~~fi~pfddp~viaGqgTig~EI~eQl~~- 257 (591)
T PLN02550 180 GCDAVIAMPVT-TPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPPFDHPDVIAGQGTVGMEIVRQHQG- 257 (591)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEECCCCChHHHHHHHHHHHHHHHHcCC-
Confidence 99999999997 789999999999999999999999999999999999888889987 799999999999999999985
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.+|+||||+|+||+++|++.+|+++ +|.+||||||+++++++..+++.|+. .......|+++++.+..+.
T Consensus 258 ~~D~VvvpVGgGGLiaGia~~lK~l------~p~vkVIGVEp~~a~~~~~s~~~G~~--v~~~~~~tiAdGiav~~~G-- 327 (591)
T PLN02550 258 PLHAIFVPVGGGGLIAGIAAYVKRV------RPEVKIIGVEPSDANAMALSLHHGER--VMLDQVGGFADGVAVKEVG-- 327 (591)
T ss_pred CCCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHhcCCc--cccCCCCCccceeecCCCC--
Confidence 5899999999999999999999864 37789999999999999999999963 2334557999999987765
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCc
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~ 478 (526)
+..+..++++.|.++.|+|+||.+|++++ +++|+++||++|+++||++++.+++.+ ++++||+|+||++..+
T Consensus 328 ~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~-~g~~Vv~vlsGgNid~ 400 (591)
T PLN02550 328 EETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGL-KDENVVAITSGANMNF 400 (591)
T ss_pred HHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCC-CCCeEEEEecCCCCCH
Confidence 45778889999999999999999999985 889999999999999999998876655 6789999999998864
No 26
>PLN02970 serine racemase
Probab=100.00 E-value=2.8e-50 Score=416.74 Aligned_cols=293 Identities=17% Similarity=0.165 Sum_probs=250.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.... + .++|+++|+||+|.|+|++|+.+|
T Consensus 25 i~~TPL~~~~~l~~~-~g~-~i~~K~E~~nptGSfKdRga~~~i~~~~~~~--~--~~~vv~aSsGN~g~alA~~a~~~G 98 (328)
T PLN02970 25 IHRTPVLTSSSLDAL-AGR-SLFFKCECFQKGGAFKFRGACNAIFSLSDDQ--A--EKGVVTHSSGNHAAALALAAKLRG 98 (328)
T ss_pred CCCCCeeechhhHHh-hCC-eEEEEecCCCCCCCcHHHHHHHHHHHhhHhh--c--CCeEEEECCcHHHHHHHHHHHHcC
Confidence 388999999998876 675 8999999999999999999999999875321 2 357999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ .++.|+.+|+.|||+|+.++++++++.+.+++++++.++|++|++ ||..++|++|+++||++|++ .
T Consensus 99 ~~~~ivvp~~-~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~~~n~~~~~g~~t~g~Ei~~ql~--~ 175 (328)
T PLN02970 99 IPAYIVVPKN-APACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVISGQGTIALEFLEQVP--E 175 (328)
T ss_pred CCEEEEECCC-CCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhhehHHHHHHHHHhcc--C
Confidence 9999999997 789999999999999999999999999999999988888999987 68899999999999999998 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|++. +|.+|||+|||+++++++.+++.|. ..+.+..+|+++++.++ +. .
T Consensus 176 ~D~vv~~vG~GG~~~Gi~~~lk~~------~~~~kvi~Vep~~~~~~~~s~~~g~--~~~~~~~~tia~gl~~~-~~--~ 244 (328)
T PLN02970 176 LDVIIVPISGGGLISGIALAAKAI------KPSIKIIAAEPKGADDAAQSKAAGE--IITLPVTNTIADGLRAS-LG--D 244 (328)
T ss_pred CCEEEEeeCchHHHHHHHHHHHhc------CCCCEEEEEEECCCcHHHHHHHcCC--ceeCCCCCCccccccCC-cC--H
Confidence 999999999999999999998863 3778999999999999999999885 23334557999999875 32 2
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHH-HHHcCCCCC-CCeEEEEECCCCCCchHH
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIK-LRCKGVIGK-TDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~-l~~~g~i~~-~~~vVvv~TG~g~K~~~~ 481 (526)
..+..+++..+.++.|+|+|++++++++ +++|+++||++|+++|++++ +.+.+.+.+ +++||+++||++ .+.+.
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn-~~~~~ 321 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGN-VDLGV 321 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECCCC-CCHHH
Confidence 3455567788999999999999999986 77999999999999999664 344443333 479999999964 44444
No 27
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-50 Score=417.85 Aligned_cols=295 Identities=18% Similarity=0.213 Sum_probs=254.5
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||++++++++. .|. +||+|+|++|||||||||++.+++..+.... + ..+|+++||||+|.|+|++|+.+|
T Consensus 25 i~~TPlv~~~~l~~~-~g~-~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~--~--~~~vv~~SsGN~g~alA~~aa~~G 98 (333)
T PRK08638 25 IRKTPLPRSNYLSER-CKG-EIFLKLENMQRTGSFKIRGAFNKLSSLTDAE--K--RKGVVACSAGNHAQGVALSCALLG 98 (333)
T ss_pred CcCCCceechhhHHh-hCC-eEEEEeccCCccCCcHHHHHHHHHHhccHHh--c--CCeEEEeCCcHHHHHHHHHHHHcC
Confidence 489999999998876 665 8999999999999999999999998765321 2 357999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ .++.|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+++||++|++ .
T Consensus 99 ~~~~iv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~Ei~~q~~--~ 175 (333)
T PRK08638 99 IDGKVVMPKG-APKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLEILEDLW--D 175 (333)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHHHHhhcC--C
Confidence 9999999997 789999999999999999999999999999999988888999987 79999999999999999996 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|+++ + +.+|||+|||++++++++++..|... ......|+++++.+..|.++.
T Consensus 176 ~d~vv~~vG~Gg~~~Gv~~~lk~~---~---~~~~vigVep~g~~~~~~s~~~g~~~--~~~~~~ti~~gl~~~~p~~~~ 247 (333)
T PRK08638 176 VDTVIVPIGGGGLIAGIAVALKSI---N---PTIHIIGVQSENVHGMAASFYAGEIT--THRTTGTLADGCDVSRPGNLT 247 (333)
T ss_pred CCEEEEEeChhHHHHHHHHHHHHh---C---CCCEEEEEEECCCchHHHHHHCCCcc--cCCCCCCeeccccCCCccHHH
Confidence 899999999999999999999864 2 67899999999999999999988532 233446899999888887743
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHH
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKI 483 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~ 483 (526)
+..+++..+.++.|+|+|++++++++ +++|+++||++|+++|++......+. .++++||+|+|| |..+++.+.
T Consensus 248 --~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~-~~~~~vv~v~~G-gn~~~~~~~ 321 (333)
T PRK08638 248 --YEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQY-IQNKKVVAIISG-GNVDLSRVS 321 (333)
T ss_pred --HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccc-cCCCcEEEEECC-CCCCHHHHH
Confidence 45567889999999999999999985 77999999999999999875432222 257899999999 556666643
No 28
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=4.2e-50 Score=426.64 Aligned_cols=326 Identities=17% Similarity=0.228 Sum_probs=266.3
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
..++|||++++.++.. +|. +||+|+|++|||||||||++.+++..+.+. +. ..+|+++||||||.|+|++|+++
T Consensus 22 ~i~~TPl~~~~~ls~~-~g~-~v~~K~E~~nptGSfK~Rga~~~i~~~~~~---~~-~~gvv~aSsGN~g~a~A~aa~~~ 95 (406)
T PRK06382 22 YLNRTPLIHSTTFGDE-YGG-DIYFKLENFQKTGSFKSRGAVFKFSKLSED---EL-RNGVITASAGNHAQGVAYAASIN 95 (406)
T ss_pred cCCCCCeeEhhhhHHH-hCC-EEEEEecCCCCCCCCHHHHHHHHHHhcchh---cc-CCeEEEECCCHHHHHHHHHHHHc
Confidence 3589999999998876 675 899999999999999999999999876532 11 24699999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
|++|+||||++ .+..|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+++||++|++
T Consensus 96 G~~~~ivmp~~-~~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~-- 172 (406)
T PRK06382 96 GIDAKIVMPEY-TIPQKVNAVEAYGAHVILTGRDYDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLEIMEDLP-- 172 (406)
T ss_pred CCCEEEEEcCC-CHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHHHHHhcC--
Confidence 99999999997 688899999999999999999999999999999998899999997 68999999999999999998
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.||+||+|+|+||+++|++++|+++ +|.+|||+|||++++++.+++..|+. .+.....|+++++.++.|...
T Consensus 173 ~~d~vvvpvG~GG~~~Gv~~~~k~~------~p~~~vigVe~~~~~~~~~~~~~~~~--~~~~~~~t~a~gl~~~~~~~~ 244 (406)
T PRK06382 173 DLDQIIVPVGGGGLISGIALAAKHI------NPNVKIIGIESELSDSMKASLREGKI--VAHTSGVSICDGISVKYPGDL 244 (406)
T ss_pred CCCEEEEeeChHHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHHcCCc--eecCCCCCccccccCCCccHH
Confidence 6999999999999999999998853 37789999999999999999998853 333445799999998887643
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
.+.+++++.+.++.|+|+|+.+|++++ +++|+++||++|+++||++..... .++++||+|+||+ ..++..+.+
T Consensus 245 --~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~~---~~~~~Vv~i~sGG-n~d~~~~~~ 318 (406)
T PRK06382 245 --TFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKVD---VKGKKVAIVVSGG-NINPLLMSK 318 (406)
T ss_pred --HHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhcccc---CCCCEEEEEeCCC-CCCHHHHHH
Confidence 456678899999999999999999975 889999999999999988643211 2567899999995 455554433
Q ss_pred hhcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 485 YHSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
.....+.... +.......+++..+++.+++.
T Consensus 319 ~~~~~~~~~~-~~~rl~v~v~D~pG~L~~l~~ 349 (406)
T PRK06382 319 IIYKELENLG-QLVRIECNIPDRPGNLYRIAN 349 (406)
T ss_pred HHHHHHHhcC-CEEEEEEEcCCCCCHHHHHHH
Confidence 2221111111 111122356677777666554
No 29
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=5.8e-50 Score=413.58 Aligned_cols=292 Identities=18% Similarity=0.181 Sum_probs=249.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+.+ . ..+|+++|+||+|.|+|++|+++|
T Consensus 17 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~---~-~~gvv~aSsGN~g~alA~~a~~~G 90 (322)
T PRK07476 17 VRRTPLVASASLSAR-AGV-PVWLKLETLQPTGSFKLRGATNALLSLSAQE---R-ARGVVTASTGNHGRALAYAARALG 90 (322)
T ss_pred CCCCCceechhhHHh-hCC-eEEEEEccCCCCCCchHHHHHHHHHhhhhhh---h-CCeEEEECCChHHHHHHHHHHHhC
Confidence 488999999998876 675 8999999999999999999999999886542 2 135999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ +++.|+.+|+.|||+|+.++++++++.+.+++++++.++++++++ ||..++|++|+++||++|++ .
T Consensus 91 ~~~~i~vp~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~~~Ei~~Q~~--~ 167 (322)
T PRK07476 91 IRATICMSRL-VPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVPPFDDPRIIAGQGTIGLEILEALP--D 167 (322)
T ss_pred CCEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcceeechhHHHHHHHHhCc--C
Confidence 9999999997 788999999999999999999999999999999888888888876 89999999999999999997 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
+|+||+|+|+||+++|++++|+++ .|.+|||+||++++++++.++..|.. .......|+++++..+.+....
T Consensus 168 ~d~iv~~vG~GG~~~Gv~~~~k~~------~~~~~vigVe~~~~~~~~~s~~~g~~--~~~~~~~t~a~~l~~~~~~~~~ 239 (322)
T PRK07476 168 VATVLVPLSGGGLASGVAAAVKAI------RPAIRVIGVSMERGAAMHASLAAGRP--VQVEEVPTLADSLGGGIGLDNR 239 (322)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHh------CCCCEEEEEEECCchHHHHHHHcCCc--eeCCCCCCccccccccccCCcH
Confidence 899999999999999999999864 26789999999999999999998852 2334557899988544332222
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCC-CeEEEEECCCCCCchHH
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKT-DKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~-~~vVvv~TG~g~K~~~~ 481 (526)
..+..++...+.++.|+|+|++++++++ +++|+++||++|+++|++++ +.+.++ ++||+++||++.. ++.
T Consensus 240 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~----~~~~~~~~~Vvvi~tGg~~~-~~~ 311 (322)
T PRK07476 240 YTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLA----GKIAARDGPIVVVVSGANID-MEL 311 (322)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHh----CCcccCCCcEEEEECCCCCC-HHH
Confidence 3455666778899999999999999986 77999999999999999873 334444 8999999998874 444
No 30
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=5.4e-50 Score=413.67 Aligned_cols=293 Identities=16% Similarity=0.141 Sum_probs=253.4
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
..++|||++++++.+. .|. +||+|+|++|||||||||++.+++.++... .+ ..+|+++|+||||.|+|++|+.+
T Consensus 21 ~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~i~~~~~~--~~--~~~vv~aSsGN~g~alA~~a~~~ 94 (321)
T PRK07048 21 VAHRTPVLTSRTADAR-TGA-QVFFKCENFQRMGAFKFRGAYNALSQFSPE--QR--RAGVVTFSSGNHAQAIALSARLL 94 (321)
T ss_pred CCCCCCCccchhhHHh-cCC-eEEEEeccCCCCCCeeHHHHHHHHHhhhHh--hc--CCcEEEeCCCHHHHHHHHHHHHc
Confidence 4578999999988765 564 899999999999999999999999987532 12 35799999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
|++++||||.+ .++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||.+++||+|+++||++|++
T Consensus 95 G~~~~vvvp~~-~~~~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~-- 171 (321)
T PRK07048 95 GIPATIVMPQD-APAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVG-- 171 (321)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHHHHHhhcC--
Confidence 99999999997 789999999999999999999999999999999998899999987 79999999999999999997
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.||+||+|+|+||+++|++++|+++ .+.+|||+||++++++++.++..|+ ........|+++++.+..+.
T Consensus 172 ~~D~vv~~vGtGG~~~Gi~~~~k~~------~~~~~vigvep~~~~~~~~s~~~g~--~~~~~~~~tia~g~~~~~~~-- 241 (321)
T PRK07048 172 PLDALFVCLGGGGLLSGCALAARAL------SPGCKVYGVEPEAGNDGQQSFRSGE--IVHIDTPRTIADGAQTQHLG-- 241 (321)
T ss_pred CCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEEEeeCCChhHHHHHHcCC--cccCCCCCCcccccccCCcc--
Confidence 6999999999999999999998864 2678999999999999999999885 33444567899988764433
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHH
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSK 482 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~ 482 (526)
...+..+++..+.++.|+|+|++++++++ +++|+++||++|+++|+++++.++ .++++||+|+||+ ..+.+.+
T Consensus 242 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~---~~~~~vv~i~tGG-n~~~~~~ 315 (321)
T PRK07048 242 NYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP---LKGKRVGVIISGG-NVDLARF 315 (321)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh---cCCCeEEEEeCCC-CCCHHHH
Confidence 34556667888899999999999999986 789999999999999999987655 3678999999995 4555554
No 31
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=8.5e-50 Score=413.63 Aligned_cols=279 Identities=20% Similarity=0.228 Sum_probs=240.8
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-+.|||++++.+ +||+|+|++||||||||||+.+++..+.+. +. .+.|+++||||||.|+|++|+.+|
T Consensus 37 i~~TPL~~~~~l--------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~---~~-~~~VV~aSsGN~G~alA~aa~~~G 104 (349)
T PRK08813 37 LSPTPLHYAERF--------GVWLKLENLQRTGSYKVRGALNALLAGLER---GD-ERPVICASAGNHAQGVAWSAYRLG 104 (349)
T ss_pred CCCCCeEECCCC--------cEEEEecCCCCcCCCHHHHHHHHHHHHHHc---CC-CCeEEEECCCHHHHHHHHHHHHcC
Confidence 478999987653 499999999999999999999999988643 22 246999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ .++.|+.+++.|||+|+.++++|+++.+.+++++++.+++++|++ ||.+++||+|+++||++| .
T Consensus 105 i~~~IvvP~~-~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~~g~~~v~~~~np~~i~G~~Tig~EI~e~----~ 179 (349)
T PRK08813 105 VQAITVMPHG-APQTKIAGVAHWGATVRQHGNSYDEAYAFARELADQNGYRFLSAFDDPDVIAGQGTVGIELAAH----A 179 (349)
T ss_pred CCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCccCChHHHHHHHHHHHHHHcC----C
Confidence 9999999997 789999999999999999999999999999999998999999986 799999999999999986 4
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|++ +.+|||+||++++++++++|. |.. .......|+++++.+..|...
T Consensus 180 pD~VvvpvGgGGliaGia~~lk~--------~~~rVigVqpega~~~~~s~~-g~~--~~~~~~~tiadgl~~~~p~~~- 247 (349)
T PRK08813 180 PDVVIVPIGGGGLASGVALALKS--------QGVRVVGAQVEGVDSMARAIR-GDL--REIAPVATLADGVKVKIPGFL- 247 (349)
T ss_pred CCEEEEEeCccHHHHHHHHHHhc--------CCCEEEEEEECCCchHHHHHc-CCC--cccCCCCceecccccCCcchh-
Confidence 89999999999999999998873 236999999999999999998 532 223344799999998877544
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
.+...++..+.++.|+|+|+.+|++++ +++|+++||++|+++||++++ ++++|++|+||++.. .+.+.+
T Consensus 248 -~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~-------~~~~v~~vlsGgN~d-~~~~~~ 317 (349)
T PRK08813 248 -TRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV-------SGKRKCAVVSGGNID-ATVLAT 317 (349)
T ss_pred -HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh-------CCCCEEEEECCCCCC-HHHHHH
Confidence 345557788899999999999999986 789999999999999998763 356899999998874 444433
No 32
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.3e-49 Score=417.53 Aligned_cols=305 Identities=17% Similarity=0.176 Sum_probs=256.3
Q ss_pred cCCCceecccccccccCCCcEEEEecCCC-CCCchhhhhHHHHHHHHHHHH----------------hc--CCCceEEEE
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGIS-HTGSFKDLGMTVLVSQVNRLK----------------RM--NKPVIGVGC 229 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~n-PTGSFKDRga~~~v~~a~~~~----------------~~--g~~~~~Vv~ 229 (526)
-.|||++++.+++. +|+.+||+|+|++| |||||||||+.+.+.++.... +. +.+..+|++
T Consensus 21 ~~TPL~~~~~l~~~-~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 99 (376)
T TIGR01747 21 RPTPLCALDHLANL-LGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFAT 99 (376)
T ss_pred CCCCCcchHHHHHH-hCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEE
Confidence 57999999999887 88778999999997 599999999999998874310 10 011468999
Q ss_pred eccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-------
Q 009781 230 ASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS------- 302 (526)
Q Consensus 230 aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns------- 302 (526)
+|+||||+|+|++|+.+|++|+||||++ +++.|+.+|+.+||+|+.++++++++.+.+++++++.++|+++.
T Consensus 100 aSsGN~g~a~A~~Aa~~G~~~~I~vP~~-~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~ 178 (376)
T TIGR01747 100 ATDGNHGRGVAWAAQQLGQKAVVYMPKG-SAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHGWVVVQDTAWEGYE 178 (376)
T ss_pred ECccHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCcEEeccccccccc
Confidence 9999999999999999999999999997 78999999999999999999999999999999988888888762
Q ss_pred -CchhHHhHHHHHHHHHHHHcC---CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHH
Q 009781 303 -LNSLRLEGQKTAAIEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYK 378 (526)
Q Consensus 303 -~Np~~i~G~~T~a~EI~eQl~---~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~ 378 (526)
.+|++++||+|+++||++|++ |..||+||+|+|+||++.|++++|+++.. +..||||+||+++++++++++.
T Consensus 179 ~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~----~~~p~vi~Vep~ga~~~~~s~~ 254 (376)
T TIGR01747 179 KIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYS----ENNPHSIVVEPDKADCLYQSAV 254 (376)
T ss_pred cCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcC----CCCCEEEEEeeCCCCHHHHHHH
Confidence 347889999999999999996 34799999999999999999998875432 2457999999999999999997
Q ss_pred hCCccccccC-CccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-Hhc----CCeecchHHHHHHHH
Q 009781 379 SGWKDFKPVR-ANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DST----GMFVCPHTGVALSAL 452 (526)
Q Consensus 379 ~G~~~~~~~~-~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~----Gi~veP~sA~alAal 452 (526)
.+..+..+.+ ...|+++++.++.|... .+.+++++.+.++.|+|+||.+||++| +.. ++++||++|+++|++
T Consensus 255 ~~~g~~~~~~~~~~Tiadgl~~~~~~~~--~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l 332 (376)
T TIGR01747 255 KKDGDIVNVGGDMATIMAGLACGEPNPI--SWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLL 332 (376)
T ss_pred hcCCCeEEcCCCccccccccccCCcchH--HHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHH
Confidence 7212344444 25799999998887543 457788999999999999999999987 434 599999999999887
Q ss_pred H---------HHHHcCCCCCCCeEEEEECCCCCCchHHH
Q 009781 453 I---------KLRCKGVIGKTDKTVVVSTAHGLKFTQSK 482 (526)
Q Consensus 453 ~---------~l~~~g~i~~~~~vVvv~TG~g~K~~~~~ 482 (526)
. ++++++.+.++++||+++||++ -+++..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn-~d~~~~ 370 (376)
T TIGR01747 333 AAVMYHPQYQSLMEKLQLDKDAVVLVISTEGD-TDPDHY 370 (376)
T ss_pred HHHHhCchHHHHHHHcCCCCCCEEEEEeCCCC-CCHHHH
Confidence 7 5566777788899999999964 456553
No 33
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.1e-49 Score=431.28 Aligned_cols=328 Identities=17% Similarity=0.168 Sum_probs=274.5
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||++++++++. +|. +||+|+|++||||||||||+.+++..+... .+ ..+||++|+||||.++|++|+++|
T Consensus 15 i~~TPL~~~~~Ls~~-~g~-~i~lK~E~lqptgSfK~RgA~n~i~~l~~~--~~--~~gVV~aSaGNha~~vA~aa~~~G 88 (499)
T TIGR01124 15 AQETPLQKAAKLSER-LGN-RILIKREDLQPVFSFKLRGAYNKMAQLSPE--QK--ARGVIAASAGNHAQGVAFSAARLG 88 (499)
T ss_pred cCCCCeeehHHHHHH-hCC-EEEEEecCCCCCCCCHHHHHHHHHHHhhHH--hc--CCEEEEECCCHHHHHHHHHHHHcC
Confidence 578999999999887 675 899999999999999999999999886432 11 357999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ ++..|+.+++.+||+|+.++++++++.+.+++++++.++++++++ ||..++||+|+|+||++|+++ .
T Consensus 89 i~~~IvmP~~-tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~-~ 166 (499)
T TIGR01124 89 LKALIVMPET-TPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFIHPFDDPLVIAGQGTLALEILRQVAN-P 166 (499)
T ss_pred CCEEEEECCC-CCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCC-C
Confidence 9999999997 788999999999999999999999999999999999999999987 799999999999999999985 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++.+|+++ .|.+|||+|||++++++..+++.|+. .......|+++++.+..|. +
T Consensus 167 ~D~vvvpvGgGGliaGia~~lk~~------~p~~kVIgVep~~~~~~~~s~~~g~~--~~~~~~~t~adgiav~~~g--~ 236 (499)
T TIGR01124 167 LDAVFVPVGGGGLAAGVAALIKQL------MPEIKVIGVEPTDSDCMKQALDAGEP--VDLDQVGLFADGVAVKRVG--D 236 (499)
T ss_pred CCEEEEccCccHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHhcCCc--eeCCCCCCccCcccCCCcc--H
Confidence 999999999999999999988864 26789999999999999999999863 3345568999999988774 4
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDY 485 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~ 485 (526)
..+..+++..+.++.|+|+|+.+|++++ +++|+++||++|+++||++++.+++.+ +++++|+|+||++..+... ...
T Consensus 237 ~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~-~~~~vv~i~sG~n~~~~~l-~~~ 314 (499)
T TIGR01124 237 ETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGI-RGQTLVAILSGANMNFHRL-RYV 314 (499)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCC-CCCeEEEEECCCCCCHHHH-HHH
Confidence 5677888999999999999999999986 789999999999999999998877654 5789999999999875432 211
Q ss_pred hcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 486 HSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
..-.+.. ..+...-...|+...+++++++.
T Consensus 315 ~~r~~~~-~~re~~l~V~iPerPGal~~f~~ 344 (499)
T TIGR01124 315 SERCELG-EQREALLAVTIPEQPGSFLKFCE 344 (499)
T ss_pred HHHHHHh-cCCEEEEEEEeCCCCCHHHHHHH
Confidence 1000000 01222223467777777766665
No 34
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.1e-49 Score=410.80 Aligned_cols=292 Identities=18% Similarity=0.157 Sum_probs=239.7
Q ss_pred hcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHH
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYC 243 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 243 (526)
++...|+|||++++.++.. .+. +||+|+|++|||||||||++.+++..+.+.+...++...|+++||||+|.|+|++|
T Consensus 9 ~~~~ig~TPLv~l~~l~~~-~~~-~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a 86 (322)
T PLN02565 9 VTELIGKTPLVYLNNVVDG-CVA-RIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMA 86 (322)
T ss_pred HHHHhCCCceEEccccCCC-CCc-eEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHH
Confidence 4567899999998876543 333 89999999999999999999999998865433223335699999999999999999
Q ss_pred HhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC--CHHHHHHHHHHHHhcC-CeeeccCC-chhH-HhHHHHHHHHH
Q 009781 244 ASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT--DFDGCMQLIREVTSEL-PIYLANSL-NSLR-LEGQKTAAIEI 318 (526)
Q Consensus 244 a~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~dd~~~~~~~~~~~~-~~~~~ns~-Np~~-i~G~~T~a~EI 318 (526)
+.+|++|+||||++ +++.|+.+|+.|||+|+.++. +++++.+.+++++++. ++|++|++ ||.. ..||+|+|+||
T Consensus 87 ~~~G~~~~ivvp~~-~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 87 AAKGYKLIITMPAS-MSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 99999999999997 899999999999999999986 4578888899988775 78888887 6643 46899999999
Q ss_pred HHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccc
Q 009781 319 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQ 398 (526)
Q Consensus 319 ~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~ 398 (526)
++|+++ .||+||+|+|+||+++|++++|+++. |.+|||+||+++|+++. .|. + .+...++|.
T Consensus 166 ~~q~~~-~~d~vv~~vG~GG~l~Gi~~~lk~~~------p~~kvi~Vep~~s~~~~----~g~----~---~~~~~~glg 227 (322)
T PLN02565 166 WKGTGG-KVDAFVSGIGTGGTITGAGKYLKEQN------PDIKLYGVEPVESAVLS----GGK----P---GPHKIQGIG 227 (322)
T ss_pred HHhcCC-CCCEEEEcCCchHHHHHHHHHHHHhC------CCCEEEEEecCCCcccc----CCC----C---CCccCCCCC
Confidence 999975 59999999999999999999988642 67899999999988773 332 1 122346676
Q ss_pred cCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCC
Q 009781 399 IGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLK 477 (526)
Q Consensus 399 i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K 477 (526)
++.+.... .+. ..+.++.|+|+|+++++++| +++|+++||+||++++++.++.+++. .++++||+|+||+|.|
T Consensus 228 ~~~~~~~~-~~~----~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~-~~~~~vV~v~~d~G~k 301 (322)
T PLN02565 228 AGFIPGVL-DVD----LLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPE-NAGKLIVVIFPSFGER 301 (322)
T ss_pred CCCCCCcC-CHh----HCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcC-CCCCeEEEEECCCccc
Confidence 64332221 122 23568999999999999986 78999999999999999999988765 4678999999999999
Q ss_pred chHHH
Q 009781 478 FTQSK 482 (526)
Q Consensus 478 ~~~~~ 482 (526)
|++..
T Consensus 302 y~~~~ 306 (322)
T PLN02565 302 YLSSV 306 (322)
T ss_pred cCCch
Confidence 99873
No 35
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=423.16 Aligned_cols=324 Identities=18% Similarity=0.212 Sum_probs=270.1
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
.-++|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+.. + .++|+++|+||||.++|++|+++
T Consensus 19 ~i~~TPl~~~~~ls~~-~g~-~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~--~--~~~vv~aSsGN~g~alA~~a~~~ 92 (404)
T PRK08198 19 VVRRTPLEYSRTLSEL-TGA-EVYLKCENLQRTGSFKIRGAYNKIASLSEEE--R--ARGVVAASAGNHAQGVAYAASLL 92 (404)
T ss_pred cCCCCCceehhhHHHH-hCC-EEEEEECCCCCCCCCHHHHHHHHHHhccHhh--c--CCEEEEECCCHHHHHHHHHHHHc
Confidence 3588999999998876 675 8999999999999999999999998875321 1 46899999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
|++|+||||++ ++..|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+|+||++|++
T Consensus 93 G~~~~iv~p~~-~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~~-- 169 (404)
T PRK08198 93 GIKATIVMPET-APLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLEILEDLP-- 169 (404)
T ss_pred CCCEEEEECCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHHHHHhCC--
Confidence 99999999997 788999999999999999999999999999999998899999987 68999999999999999997
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.+|+||+|+|+||+++|++++|+++ .|.+|||+||++++++++.+++.|+. ......+|+++++.+..|...
T Consensus 170 ~~d~vv~~vG~GG~~~Gi~~~~k~~------~p~~kiigVe~~~~~~~~~~~~~g~~--~~~~~~~t~a~g~~v~~~~~~ 241 (404)
T PRK08198 170 DVDTVVVPIGGGGLISGVATAVKAL------RPEVRVIGVQAEGAPAMPESLAAGRP--VELESVDTIADGIAVKRPGDL 241 (404)
T ss_pred CCCEEEEEeCHhHHHHHHHHHHHHh------CCCCEEEEEEeCCChHHHHHHHcCCC--EecCCCCccccccccCCcCHH
Confidence 5899999999999999999999865 26789999999999999999998852 233456899999998887643
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
.+..+++..+.++.|+|+|+++|++++ +++|+++||++|+++||++++.+ +.++++||+++||++ .+.+.+..
T Consensus 242 --~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~---~~~~~~vv~vl~ggn-~~~~~l~~ 315 (404)
T PRK08198 242 --TFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKL---DVKGKKVVAVLSGGN-IDVLLLSR 315 (404)
T ss_pred --HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchh---hcCCCeEEEEECCCC-CCHHHHHH
Confidence 456678889999999999999999985 78999999999999999998753 346889999999954 55555433
Q ss_pred hhcchhhHHHh--hhcCCCcccCCCHHHHHHHHH
Q 009781 485 YHSQNIKDMAC--RLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 485 ~~~~~~~~~~~--~~~~~~~~i~~~~~~v~~~~~ 516 (526)
... +.+.. +.......+++..+++.+++.
T Consensus 316 ii~---~gl~~~gr~~~l~v~l~D~PG~L~~ll~ 346 (404)
T PRK08198 316 VIE---RGLVAAGRYLKLRVRLPDRPGQLAKLLS 346 (404)
T ss_pred HHH---hhhhhcCCEEEEEEEeCCCCCHHHHHHH
Confidence 221 11111 111223467777777766655
No 36
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-50 Score=408.26 Aligned_cols=293 Identities=20% Similarity=0.271 Sum_probs=259.0
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
--.|||..++.|++. +|. ++|+|+|+++||||||.||+.+.++.+....+ +..+||++|+||||.++|+.|+++|
T Consensus 23 ~~~TPL~~s~~Ls~~-~g~-~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~---~~~gViaaSaGNHaQGvA~aa~~lG 97 (347)
T COG1171 23 VNPTPLQRSPSLSER-LGA-EIYLKRENLQPVGSFKIRGAYNKLSSLSEEEE---RAAGVIAASAGNHAQGVAYAAKRLG 97 (347)
T ss_pred ccCCCcccchhhHHh-hCc-eEEEeeccCcccccchhhhHHHHHHhcChhhh---hcCceEEecCCcHHHHHHHHHHHhC
Confidence 347999999999887 664 89999999999999999999999998753221 2367999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++++||||.+ ++..|...++.|||+|+.++.+|||+.+.+++++++.|+++++++ +|..+.||.|+++||++|++. .
T Consensus 98 i~a~IvMP~~-tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~-~ 175 (347)
T COG1171 98 IKATIVMPET-TPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPD-L 175 (347)
T ss_pred CCEEEEecCC-CcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhccc-c
Confidence 9999999997 799999999999999999999999999999999999999999998 589999999999999999994 3
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||.|+||+|+||+++|+..+++.+ .|.+|||+|||++++.++++++.|.. ........|+++|+.+..|.+.
T Consensus 176 ~d~v~vpvGGGGLisGia~~~k~~------~p~~~vIGVEp~~a~~~~~Sl~~G~~-~~~~~~~~tiaDG~av~~~g~~- 247 (347)
T COG1171 176 PDAVFVPVGGGGLISGIATALKAL------SPEIKVIGVEPEGAPSMYASLKAGKI-VVVLPDVGTIADGLAVKRPGDL- 247 (347)
T ss_pred CCEEEEecCccHHHHHHHHHHHHh------CCCCeEEEEeeCCChHHHHHHHcCCc-eeecCCCCccccccccCCCCHH-
Confidence 799999999999999999877643 26689999999999999999999942 3334457899999999988764
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCc
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~ 478 (526)
.+..+++..+.++.|+|+||.++|+.+ +++++++||++|+++||+++...+- .++.++++|+||++..+
T Consensus 248 -tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~--~~g~~v~~ilSGgN~d~ 317 (347)
T COG1171 248 -TFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP--LQGKTVVVILSGGNIDF 317 (347)
T ss_pred -HHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh--cCCCeEEEEecCCCCCH
Confidence 678889999999999999999999985 8899999999999999999876552 24666999999987654
No 37
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.8e-49 Score=431.20 Aligned_cols=328 Identities=18% Similarity=0.168 Sum_probs=273.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
.+.|||++++++++. +|. +||+|+|++||||||||||+.+++..+... .+ ..+||++|+||||.++|++|+++|
T Consensus 18 ~~~TPL~~~~~Ls~~-~g~-~i~lK~E~lqptgSfK~RgA~n~i~~l~~~--~~--~~gvV~aSaGNha~avA~aa~~lG 91 (504)
T PRK09224 18 AQETPLEKAPKLSAR-LGN-QVLLKREDLQPVFSFKLRGAYNKMAQLTEE--QL--ARGVITASAGNHAQGVALSAARLG 91 (504)
T ss_pred CCCCCceehhHhHHH-hCC-EEEEEecCCCCCCCChHHHHHHHHHhhhHH--hc--CCEEEEECcCHHHHHHHHHHHHcC
Confidence 478999999998876 675 899999999999999999999999887532 12 357999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||++ ++..|+.+++.+||+|+.++++++++.+.+.+++++.++++++++ ||..++||+|+++||++|+++ .
T Consensus 92 i~~~IvmP~~-tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~-~ 169 (504)
T PRK09224 92 IKAVIVMPVT-TPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPH-P 169 (504)
T ss_pred CCEEEEECCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccC-C
Confidence 9999999997 788999999999999999999999999999999999899999987 799999999999999999984 4
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||||+|+||+++|++.+|+++ .|.+|||+||++++++++.+++.|+. ...+...|+++++.+..|. .
T Consensus 170 ~D~vvvpvGgGGliaGia~~lk~~------~p~~kVigVe~~~~~~~~~s~~~g~~--~~~~~~~~~adg~av~~~g--~ 239 (504)
T PRK09224 170 LDAVFVPVGGGGLIAGVAAYIKQL------RPEIKVIGVEPEDSACLKAALEAGER--VDLPQVGLFADGVAVKRIG--E 239 (504)
T ss_pred CCEEEEecChhHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHhcCCC--ccCCCCCcccCcccCCCcc--H
Confidence 999999999999999999988864 26789999999999999999999863 2334567899999877664 3
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDY 485 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~ 485 (526)
..+..++++.+.++.|+|+|+.+|++++ +++|+++||++|+++||++++.+++.+. +++||+|+||++..+... ...
T Consensus 240 ~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~-g~~vv~i~sG~n~~~~~l-~~~ 317 (504)
T PRK09224 240 ETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIE-GETLVAILSGANMNFDRL-RYV 317 (504)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCC-CCeEEEEECCCCCCHHHH-HHH
Confidence 4677788899999999999999999986 7899999999999999999988776554 889999999999886432 111
Q ss_pred hcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 486 HSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
..-.+. ...+...-...++...+++++++.
T Consensus 318 ~~r~~~-~~~re~~l~v~iPerPGaL~~f~~ 347 (504)
T PRK09224 318 AERAEL-GEQREALLAVTIPEEPGSFLKFCE 347 (504)
T ss_pred HHHHHH-hcCCEEEEEEEeCCCCCHHHHHHH
Confidence 100000 001122223467777777777665
No 38
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.9e-49 Score=418.59 Aligned_cols=320 Identities=18% Similarity=0.234 Sum_probs=266.1
Q ss_pred CCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCCCE
Q 009781 171 SNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPS 250 (526)
Q Consensus 171 TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~ 250 (526)
|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+. ++ ..+|+++|+||||.++|++|+++|++|
T Consensus 1 TPl~~~~~ls~~-~g~-~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~---~~-~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDI-TGS-EVYLKLENLQKTGSFKIRGALNKIANLSED---QR-QRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHH-hCC-eEEEEecCCCCCCCcHHHHHHHHHHhcchh---cc-CCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 899999998876 675 899999999999999999999999887543 22 257999999999999999999999999
Q ss_pred EEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCCCcE
Q 009781 251 IVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEVPDW 329 (526)
Q Consensus 251 ~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~pd~ 329 (526)
+||||++ ++..|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+++||++|++ .||+
T Consensus 75 ~iv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--~~D~ 151 (380)
T TIGR01127 75 VIVMPES-APPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIP--DVDT 151 (380)
T ss_pred EEEEcCC-CcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCC--CCCE
Confidence 9999997 788999999999999999999999999999999998899999987 68999999999999999998 6999
Q ss_pred EEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHHHHH
Q 009781 330 VIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAV 409 (526)
Q Consensus 330 VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l 409 (526)
||+|+|+||+++|++++|+++ .|.+|||+|||+++++++.+++.|+ ..+.....|+++++.++.|... .+
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~------~p~~kvigVe~~~~~~~~~~~~~g~--~~~~~~~~~~a~g~~~~~~~~~--~~ 221 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQI------NPNVKVIGVEAEGAPSMYESLREGK--IKAVESVRTIADGIAVKKPGDL--TF 221 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHHcCC--ceecCCCCCeecchhCCCccHH--HH
Confidence 999999999999999998864 2678999999999999999999885 3344556899999998887653 45
Q ss_pred HHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhhcc
Q 009781 410 YALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYHSQ 488 (526)
Q Consensus 410 ~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~~~ 488 (526)
..+++..+.++.|+|+|+.+|++++ +++|+++||++|+++||+++.... .++++||+++||++ .+.+.+.....
T Consensus 222 ~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~---~~~~~vv~i~sGGn-~d~d~l~~vi~- 296 (380)
T TIGR01127 222 NIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD---VKGKKIAVVLSGGN-IDLNLLNKIIE- 296 (380)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc---cCCCeEEEEeCCCC-CCHHHHHHHHH-
Confidence 5667888999999999999999985 789999999999999999864321 35789999999954 55665433221
Q ss_pred hhhHHHhhhc--CCCcccCCCHHHHHHHHH
Q 009781 489 NIKDMACRLA--NPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 489 ~~~~~~~~~~--~~~~~i~~~~~~v~~~~~ 516 (526)
. .+...-+ .....+++..+.+.+++.
T Consensus 297 -~-gl~~~gr~~~l~v~l~D~pG~L~~v~~ 324 (380)
T TIGR01127 297 -K-GLVKSGRKVRIETVLPDRPGALYHLLE 324 (380)
T ss_pred -H-HHHhCCCEEEEEEEeCCCCCHHHHHHH
Confidence 0 1111111 223356666676666554
No 39
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.9e-49 Score=421.53 Aligned_cols=332 Identities=19% Similarity=0.243 Sum_probs=271.2
Q ss_pred cccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHH
Q 009781 165 SAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 165 sl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
.-.-++|||++++.+++. +|. +||+|+|++||||||||||+.+++..+... +...+|+++|+||||.++|++|+
T Consensus 11 ~~~i~~TPl~~~~~ls~~-~g~-~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~----~~~~gvv~aSsGN~g~a~A~~a~ 84 (409)
T TIGR02079 11 KEVVPHTPLQLNERLSEK-YGA-NIYLKREDLQPVRSYKIRGAYNFLKQLSDA----QLAKGVVCASAGNHAQGFAYACR 84 (409)
T ss_pred hCcCCCCCccccHHHHHH-hCC-EEEEEecCCCCCCCcHHHHHHHHHHhCCHH----hhCCEEEEECccHHHHHHHHHHH
Confidence 345689999999999876 675 899999999999999999999999865321 11357999999999999999999
Q ss_pred hcCCCEEEEcCCCcCCHHhHHhHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHH
Q 009781 245 SAGVPSIVFLPANKISIAQLVQPIANGAF---VLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQ 320 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~---Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~e 320 (526)
++|++|+||||++ ++..|+.+++.|||+ |+.++++++++.+.+++++++.+++++|++ ||..++||+|+++||++
T Consensus 85 ~~G~~~~iv~p~~-~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~~g~~ti~~Ei~~ 163 (409)
T TIGR02079 85 HLGVHGTVFMPAT-TPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAEILD 163 (409)
T ss_pred HcCCCEEEEECCC-CCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCHhHhhhhHHHHHHHHH
Confidence 9999999999997 789999999999996 556678899999999999998898999987 79999999999999999
Q ss_pred HcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccC
Q 009781 321 QFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIG 400 (526)
Q Consensus 321 Ql~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~ 400 (526)
|+++ .||+||+|+|+||+++|++++|+++ +|.+|||+|||++++++..+++.|+. ......+|+++|+.+.
T Consensus 164 q~~~-~~D~vv~pvG~GG~~~Gia~~~k~~------~p~~~vigVep~~~~~~~~s~~~g~~--~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 164 QLPE-KPDYVVVPVGGGGLISGLTTYLAGT------SPKTKIIGVEPEGAPSMKASLEAGEV--VTLDKIDNFVDGAAVK 234 (409)
T ss_pred hcCC-CCCEEEEEecHhHHHHHHHHHHHHh------CCCCEEEEEEeCCCCcHHHHHHCCCc--eecCCCCCeeccccCC
Confidence 9984 5999999999999999999999864 37789999999999999999999852 2234457999999988
Q ss_pred CCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCch
Q 009781 401 DPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFT 479 (526)
Q Consensus 401 ~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~ 479 (526)
.|... .+..++...+.++.|+|+|+.+|++++ +++|+++||++|+++||++++.++ .++++||+|+||++. ++
T Consensus 235 ~~g~~--~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~---~~~~~Vv~ilsGgn~-d~ 308 (409)
T TIGR02079 235 RVGDL--NFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE---IKGKTVVCVVSGGNN-DI 308 (409)
T ss_pred CCcHH--HHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh---cCCCeEEEEECCCCC-CH
Confidence 87643 345566777889999999999999985 789999999999999999987654 367899999999665 45
Q ss_pred HHHHhhhcchhhHHHhhhcCCCcccCCCHHHHHHHHHHHH
Q 009781 480 QSKIDYHSQNIKDMACRLANPPVSVKADFGSVMDVLKKYL 519 (526)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~ 519 (526)
+.+.+.....+.. ..+.......++...+++.+++...+
T Consensus 309 ~~~~~~~~~~l~~-~~r~~~~~v~ipdrPGaL~~~l~~i~ 347 (409)
T TIGR02079 309 ERTEEIRERSLLY-EGLKHYFIVRFPQRPGALREFLNDVL 347 (409)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEEEeCCCCCHHHHHHHHHh
Confidence 5544333211100 01111223477888888887776443
No 40
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-49 Score=408.89 Aligned_cols=290 Identities=21% Similarity=0.190 Sum_probs=250.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||++++++.+. +|. +||+|+|++|||||||||++.+++..+... .. ..+|+++|+||+|.|+|++|+++|
T Consensus 18 i~~TPLv~~~~l~~~-~g~-~i~~K~E~~nptgS~KdR~a~~~~~~l~~~--~~--~~~vv~aSsGN~g~alA~~a~~~G 91 (317)
T PRK06815 18 VRVTPLEHSPLLSQH-TGC-EVYLKCEHLQHTGSFKFRGASNKLRLLNEA--QR--QQGVITASSGNHGQGVALAAKLAG 91 (317)
T ss_pred CCCCCccccHhHHHh-hCC-eEEEEecCCCCCCCcHHHHHHHHHHhcchh--hc--CceEEEECCChHHHHHHHHHHHhC
Confidence 379999999998876 675 899999999999999999999998865421 11 356899999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||.+ .++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||..++|++|+++||++|++ .
T Consensus 92 ~~~~i~~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~--~ 168 (317)
T PRK06815 92 IPVTVYAPEQ-ASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELVEQQP--D 168 (317)
T ss_pred CCEEEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHHHhcC--C
Confidence 9999999997 688999999999999999999999999999999888888888876 68899999999999999998 4
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|+++ + +.+|||+||++++++++++|+.|. ..+.+...|+++++..+.....
T Consensus 169 ~d~vv~~vG~Gg~~~Gi~~~~k~~---~---~~~~vigVep~~~~~~~~~~~~g~--~~~~~~~~t~~~gl~~~~~~~~- 239 (317)
T PRK06815 169 LDAVFVAVGGGGLISGIATYLKTL---S---PKTEIIGCWPANSPSLYTSLEAGE--IVEVAEQPTLSDGTAGGVEPGA- 239 (317)
T ss_pred CCEEEEECcHHHHHHHHHHHHHHh---C---CCCEEEEEEeCCCCcHHHHHHCCC--cccCCCCCChhhhhccCCcccH-
Confidence 999999999999999999999865 2 568999999999999999999885 3444455788888865532222
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCc
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~ 478 (526)
..+..+++..+.++.|+|+|++++++++ +++|+++||++|+++||++++.++ .++++||+|+||++.|.
T Consensus 240 ~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~---~~~~~vv~i~tG~~~~~ 309 (317)
T PRK06815 240 ITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR---YQGKKVAVVLCGKNIVL 309 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh---cCCCcEEEEECCCCCCH
Confidence 3455667888999999999999999986 779999999999999999988765 25789999999999984
No 41
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.5e-49 Score=411.79 Aligned_cols=296 Identities=18% Similarity=0.208 Sum_probs=242.7
Q ss_pred cccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHH
Q 009781 165 SAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 165 sl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
...+|+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+.++..+ ..+|+++||||+|.|+|++|+
T Consensus 8 ~~~~g~TPL~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~ 84 (330)
T PRK10717 8 SDTIGNTPLIRLNRASEA-TGC-EILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKP-GGTIVEGTAGNTGIGLALVAA 84 (330)
T ss_pred HHHhCCCceEEccccCCC-CCC-eEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCC-CCEEEEeCCcHHHHHHHHHHH
Confidence 456899999999998876 675 89999999999999999999999998865432222 257999999999999999999
Q ss_pred hcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC-HHH---H----HHHHHHHHhc--CCeeeccCC-chhH-HhHHH
Q 009781 245 SAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD-FDG---C----MQLIREVTSE--LPIYLANSL-NSLR-LEGQK 312 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~-~dd---~----~~~~~~~~~~--~~~~~~ns~-Np~~-i~G~~ 312 (526)
++|++|+||+|.+ .++.|+.+|+.+||+|+.++++ +++ . .+.++++.++ .++++++++ ||.. ..||+
T Consensus 85 ~~G~~~~vv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (330)
T PRK10717 85 ARGYKTVIVMPET-QSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYE 163 (330)
T ss_pred HcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHH
Confidence 9999999999997 7889999999999999999975 432 2 3334343333 468888886 7874 67899
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccc
Q 009781 313 TAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTT 392 (526)
Q Consensus 313 T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~T 392 (526)
|+++||++|+++ .||+||+|+|+||+++|++++|+++. +..|||+|||+++ +++.+++.|.. . ....|
T Consensus 164 t~a~Ei~~ql~~-~~d~iv~~vG~GG~~~Gi~~~~k~~~------~~~~vi~Vep~~~-~~~~~~~~g~~--~--~~~~~ 231 (330)
T PRK10717 164 TTGPEIWEQTDG-KVDGFVCAVGTGGTLAGVSRYLKETN------PKVKIVLADPTGS-ALYSYYKTGEL--K--AEGSS 231 (330)
T ss_pred hHHHHHHHhcCC-CCCEEEEecCchHHHHHHHHHHHHhC------CCCEEEEEcCCCC-ccccccccCCc--C--CCCCc
Confidence 999999999985 58999999999999999999998652 4469999999996 67777777642 1 24468
Q ss_pred cccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 009781 393 FASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVS 471 (526)
Q Consensus 393 ia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~ 471 (526)
+++++.++.+... + .....+.++.|+|+|++++++++ +++|+++||++|+++|+++++.++ +.++++||+|+
T Consensus 232 ~~~gl~~~~~~~~---~--~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~--~~~~~~Vv~v~ 304 (330)
T PRK10717 232 ITEGIGQGRITAN---L--EGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARE--LGPGHTIVTIL 304 (330)
T ss_pred ccCcCCCCcCCcc---c--ChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHh--cCCCCEEEEEE
Confidence 8889887764321 1 11224678999999999999986 789999999999999999998765 35688999999
Q ss_pred CCCCCCchHHHH
Q 009781 472 TAHGLKFTQSKI 483 (526)
Q Consensus 472 TG~g~K~~~~~~ 483 (526)
||+|.||.+.++
T Consensus 305 ~g~g~ky~~~~~ 316 (330)
T PRK10717 305 CDSGERYQSKLF 316 (330)
T ss_pred CCCchhhccccc
Confidence 999999988765
No 42
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=2.5e-49 Score=405.17 Aligned_cols=287 Identities=21% Similarity=0.262 Sum_probs=253.7
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-|+|||++++++++. +|. +||+|+|++|||||||||++.+++.++.+.. . ..+|+++||||+|.|+|++|+++|
T Consensus 15 ig~TPl~~~~~l~~~-~g~-~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~---~-~~~iv~~ssGN~g~alA~~a~~~G 88 (304)
T cd01562 15 VRRTPLLTSPTLSEL-LGA-EVYLKCENLQKTGSFKIRGAYNKLLSLSEEE---R-AKGVVAASAGNHAQGVAYAAKLLG 88 (304)
T ss_pred CCCCCcccchhhHHH-hCC-eEEEEeccCCCcCCcHHHhHHHHHHhcCHhh---c-CCcEEEECCCHHHHHHHHHHHHcC
Confidence 389999999999876 776 8999999999999999999999998875432 1 256999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||+|++ ++..|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||..++|++++++||++|+++
T Consensus 89 ~~~~ivvp~~-~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~-- 165 (304)
T cd01562 89 IPATIVMPET-APAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEILEQVPD-- 165 (304)
T ss_pred CCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhccHHHHHHHHHHhcCC--
Confidence 9999999997 788999999999999999999999999999999999888888887 799999999999999999983
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|+++ + +.+|||+||+.++++++.++..|.. .+....+|++.+++++.|.+..
T Consensus 166 ~d~vv~~vGtGgt~~Gi~~~lk~~---~---~~~kvigv~~~~~~~~~~~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~ 237 (304)
T cd01562 166 LDAVFVPVGGGGLIAGIATAVKAL---S---PNTKVIGVEPEGAPAMAQSLAAGKP--VTLPEVDTIADGLAVKRPGELT 237 (304)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHh---C---CCCEEEEEEECCCchHHHHHHcCCc--ccCCCCCcccccccCCCchHHH
Confidence 999999999999999999999864 2 6689999999999999999998853 2333457899999988776543
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCC
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGL 476 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~ 476 (526)
+.+.++..+.++.|+|+|++++++++ +++|+++||+||+++++++++.+++ ++++||+++||++.
T Consensus 238 --~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~---~~~~vv~i~tGG~~ 303 (304)
T cd01562 238 --FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL---KGKKVVVVLSGGNI 303 (304)
T ss_pred --HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc---CCCeEEEEecCCCC
Confidence 45567788999999999999999986 7899999999999999999987764 68899999999864
No 43
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=8.8e-49 Score=402.62 Aligned_cols=283 Identities=22% Similarity=0.222 Sum_probs=242.7
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
.-++|||++++.+... + .+||+|+|++|||||||||++.+++..+.+ + .++|+++||||+|.|+|++|+++
T Consensus 20 ~i~~TPl~~~~~l~~~--~-~~i~~K~E~~nptGS~K~R~a~~~~~~~~~----~--~~~vv~aSsGN~g~a~A~~a~~~ 90 (310)
T PRK08246 20 HIRRTPVLEADGAGFG--P-APVWLKLEHLQHTGSFKARGAFNRLLAAPV----P--AAGVVAASGGNAGLAVAYAAAAL 90 (310)
T ss_pred cCCCCCeeeccccccC--C-CEEEEEECCCCCCCCCHHHHHHHHHHhhcc----c--CCeEEEeCCCHHHHHHHHHHHHc
Confidence 4588999999987531 3 489999999999999999999998876532 2 46899999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
|++|+||+|++ +++.|+.+++.+||+|+.++++++++.+.+++++++.++|+.|++ ||++++|++|+++||++|++
T Consensus 91 G~~~~iv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~t~~~Ei~eq~~-- 167 (310)
T PRK08246 91 GVPATVFVPET-APPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGLEIEEQAP-- 167 (310)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchHHHHHHHHHhcC--
Confidence 99999999997 789999999999999999999999999999999888899999987 89999999999999999997
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
.||+||+|+|+||+++|++++|+ +.+|||+||++++++++.+|+.|+. .+.....+.++++.. |...
T Consensus 168 ~~D~iv~~vG~GG~~~Gi~~~~~---------~~~~vi~ve~~~~~~~~~s~~~g~~--~~~~~~~~~~~~l~~--~~~~ 234 (310)
T PRK08246 168 GVDTVLVAVGGGGLIAGIAAWFE---------GRARVVAVEPEGAPTLHAALAAGEP--VDVPVSGIAADSLGA--RRVG 234 (310)
T ss_pred CCCEEEEecCccHHHHHHHHHhc---------CCCEEEEEeeCCChHHHHHHHcCCc--ccCCCCCceeccccC--CCcc
Confidence 69999999999999999999885 3479999999999999999999863 233333455555543 3344
Q ss_pred HHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCC
Q 009781 406 DRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGL 476 (526)
Q Consensus 406 ~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~ 476 (526)
...+.+++++.+.++.|+|+|++++++++ +++|+++||++|+++|++++.... +.++++||+++||++.
T Consensus 235 ~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~--~~~~~~vv~i~~g~n~ 304 (310)
T PRK08246 235 EIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYV--PAPGERVAVVLCGANT 304 (310)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCcc--ccCCCeEEEEECCCCC
Confidence 45677788899999999999999999986 789999999999999998754322 3467899999999764
No 44
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.1e-49 Score=420.59 Aligned_cols=331 Identities=18% Similarity=0.243 Sum_probs=269.1
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
.-++|||++++++++. .|. +||+|+|++|||||||||++.+++..+... .. ..+|+++|+||||.++|++|+++
T Consensus 22 ~i~~TPl~~~~~ls~~-~g~-~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~-~~---~~~Vv~aSsGN~g~alA~~a~~~ 95 (420)
T PRK08639 22 VVPETPLQRNDYLSEK-YGA-NVYLKREDLQPVRSYKLRGAYNAISQLSDE-EL---AAGVVCASAGNHAQGVAYACRHL 95 (420)
T ss_pred cCcCCCccchHHHHHH-hCC-EEEEEecCCCCCCCcHHHHHHHHHHhCCHH-hh---CCEEEEECccHHHHHHHHHHHHc
Confidence 4589999999998876 665 899999999999999999999999885321 11 35799999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHc
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAF---VLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQF 322 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~---Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl 322 (526)
|++|+||||++ ++..|+.+++.|||+ |+..+++++++.+.+++++++.+++++|++ ||..++||+|+|+||++|+
T Consensus 96 G~~~~IvmP~~-~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~~~~~~~~~G~~tig~EI~eq~ 174 (420)
T PRK08639 96 GIPGVIFMPVT-TPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTVAVEILEQL 174 (420)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcCCcccCCCCChhHhcchhHHHHHHHHhc
Confidence 99999999997 788999999999996 455567899999999999998899999987 7999999999999999999
Q ss_pred CCC-CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCC
Q 009781 323 DWE-VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGD 401 (526)
Q Consensus 323 ~~~-~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~ 401 (526)
++. .||+||+|+|+||+++|++++|+++ .|.+|||+|||+++++++.+++.|.. .......|+++++.+..
T Consensus 175 ~~~~~~D~vv~~vG~GG~~aGva~~~k~~------~p~~~vigVep~~~~~~~~s~~~g~~--~~~~~~~t~a~gi~v~~ 246 (420)
T PRK08639 175 EKEGSPDYVFVPVGGGGLISGVTTYLKER------SPKTKIIGVEPAGAASMKAALEAGKP--VTLEKIDKFVDGAAVAR 246 (420)
T ss_pred cccCCCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEEEEECCCCcHHHHHhCCCc--eeCCCCCCeecccccCC
Confidence 842 2899999999999999999998864 26789999999999999999999853 23445679999998877
Q ss_pred CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchH
Q 009781 402 PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQ 480 (526)
Q Consensus 402 P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~ 480 (526)
|.. ..+..+++..+.++.|+|+|+.+|++++ +++|+++||++|+++||++++.+. + ++++||+++||++. ++.
T Consensus 247 ~g~--~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~-~~~~vv~v~sGgn~-d~~ 320 (420)
T PRK08639 247 VGD--LTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--I-KGKTVVCVISGGNN-DIE 320 (420)
T ss_pred ccH--HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--c-CCCeEEEEeCCCCC-CHH
Confidence 754 3556677888999999999999999985 789999999999999999987643 2 67899999999665 455
Q ss_pred HHHhhhcchhhHHHhhhcCCCcccCCCHHHHHHHHHHHH
Q 009781 481 SKIDYHSQNIKDMACRLANPPVSVKADFGSVMDVLKKYL 519 (526)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~ 519 (526)
.+.+.....+.. ..+...-...++...+++.+++...+
T Consensus 321 ~~~~~~~~~l~~-~~r~~~~~v~ipdrPGaL~~~l~~i~ 358 (420)
T PRK08639 321 RMPEIKERSLIY-EGLKHYFIVNFPQRPGALREFLDDVL 358 (420)
T ss_pred HHHHHHHHHHHh-cCCEEEEEEEeCCCCCHHHHHHHHHh
Confidence 433322111100 01111223467788888887777443
No 45
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=9.9e-49 Score=412.55 Aligned_cols=304 Identities=18% Similarity=0.162 Sum_probs=250.9
Q ss_pred hcccccCCCceecccccccccC------C-CcEEEEecCCCC-CCchhhhhHHHHHHHHHH--HHhcCC---C-------
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQ------M-NDLWVKHCGISH-TGSFKDLGMTVLVSQVNR--LKRMNK---P------- 223 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg------~-~~l~lK~E~~nP-TGSFKDRga~~~v~~a~~--~~~~g~---~------- 223 (526)
.++++++|||++++.++.. +| . .+||+|+|++|| ||||||||+.+++..+.. ..+.|. +
T Consensus 46 ~~~~~~~TPLv~~~~ls~~-~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~ 124 (404)
T cd06447 46 ASHGIIESPLLPIPRMKQA-LEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLA 124 (404)
T ss_pred ccCCccCCCceehHHHHHH-hccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhh
Confidence 4789999999999988775 54 1 489999999999 999999999998875421 122221 1
Q ss_pred ---------ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhc
Q 009781 224 ---------VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSE 294 (526)
Q Consensus 224 ---------~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~ 294 (526)
..+||++||||||+|+|++|+.+|++|+||||++ +++.|+.+|+.|||+|+.++++++++.+.+++++++
T Consensus 125 ~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~-~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~ 203 (404)
T cd06447 125 SEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSAD-AKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAA 203 (404)
T ss_pred hhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCC-CcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 1489999999999999999999999999999997 799999999999999999999999999999999887
Q ss_pred C-CeeeccCCc-hhHHhHHHHHHHHHHHHcCC-------CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEE
Q 009781 295 L-PIYLANSLN-SLRLEGQKTAAIEILQQFDW-------EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCA 365 (526)
Q Consensus 295 ~-~~~~~ns~N-p~~i~G~~T~a~EI~eQl~~-------~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~V 365 (526)
. ++|++|++| |..++||+|+++||++|+++ ..||+||||+|+||+++|++++|+++.. +.++||+|
T Consensus 204 ~~~~~~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~-----p~~kVigV 278 (404)
T cd06447 204 DPMCYFVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFG-----DNVHCFFA 278 (404)
T ss_pred CCCeEeCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcC-----CCCEEEEE
Confidence 6 577888875 57899999999999999962 2467899999999999999999986422 45699999
Q ss_pred ecCCCchHHHHHHhCCcccccc-C---CccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCe
Q 009781 366 QAANANPLYLYYKSGWKDFKPV-R---ANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMF 440 (526)
Q Consensus 366 q~~~~~~l~~a~~~G~~~~~~~-~---~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~ 440 (526)
||++++.+..+++.|....... . ...|+++++.++.|.... +..+++..+.++.|+|+|+.+++++| +++|++
T Consensus 279 eP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~--~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~ 356 (404)
T cd06447 279 EPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLV--GKLMEPLLSGIYTVEDDELYRLLAMLKDSENIE 356 (404)
T ss_pred ccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhH--HHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcE
Confidence 9999877888888874211111 0 257999999998887654 45567788899999999999999986 679999
Q ss_pred ecchHHHHHHHHHHHHHcCCC---------CCCCeEEEEECCCCC
Q 009781 441 VCPHTGVALSALIKLRCKGVI---------GKTDKTVVVSTAHGL 476 (526)
Q Consensus 441 veP~sA~alAal~~l~~~g~i---------~~~~~vVvv~TG~g~ 476 (526)
+||++|+++||++++.++..+ -.+.+.++..||+.+
T Consensus 357 vepSgAa~lAAl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T cd06447 357 VEPSAAAGFTGPAQVLSEAEGKRYVRLGYRMENATHIVWATGGSM 401 (404)
T ss_pred EeHHHHHHHHHHHHHHHhhhHHHhcCccccccCceEEEEccCCCC
Confidence 999999999999998765221 235567888888643
No 46
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-48 Score=404.85 Aligned_cols=294 Identities=20% Similarity=0.209 Sum_probs=247.2
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+. |...++|+++|+||+|.|+|++|+++|
T Consensus 21 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~K~R~a~~~v~~a~~~---g~~~~~vv~~SsGN~g~alA~~a~~~G 95 (338)
T PRK06608 21 LHLTPIVHSESLNEM-LGH-EIFFKVESLQKTGAFKVRGVLNHLLELKEQ---GKLPDKIVAYSTGNHGQAVAYASKLFG 95 (338)
T ss_pred CcCCCccchHhHHHH-hCC-EEEEEeCCCCCCCCcHHHHHHHHHHHhhhh---cCcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 488999999998876 676 899999999999999999999999988653 321257999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||.+ +++.|+.+++.+||+|+.++. .+++.+.+++ .++.++|++|++ ||..++|++|+++||++|+++ .
T Consensus 96 ~~~~vv~p~~-~~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~-~ 171 (338)
T PRK06608 96 IKTRIYLPLN-TSKVKQQAALYYGGEVILTNT-RQEAEEKAKE-DEEQGFYYIHPSDSDSTIAGAGTLCYEALQQLGF-S 171 (338)
T ss_pred CCEEEEECCC-CCHHHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHhCCCEEcCCCCCHHHhccHHHHHHHHHHhcCC-C
Confidence 9999999997 789999999999999999975 5778788777 666788999987 799999999999999999985 5
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|+++++++ .+ +.+|||+|||+++++++.+|+.|.. ........|+++++.++.+ ..
T Consensus 172 ~D~vv~~vG~GGt~~Gi~~~~k~---~~---~~~~vigVep~~~~~~~~s~~~g~~-~~~~~~~~t~~~gl~~~~~--~~ 242 (338)
T PRK06608 172 PDAIFASCGGGGLISGTYLAKEL---IS---PTSLLIGSEPLNANDAYLSLKNNKI-YRLNYSPNTIADGLKTLSV--SA 242 (338)
T ss_pred cCEEEEeechhHHHHHHHHHHHh---cC---CCCEEEEEeeCCChHHHHHHHcCCe-EeCCCCCCCeecccCCCCC--CH
Confidence 99999999999999999998763 33 6789999999999999999998852 2222234689999877443 33
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHH
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKI 483 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~ 483 (526)
..+..++..+ .++.|+|+|++++++++ +++|+++||++|+++||++++.++. .++++||+|+|| |.++.+...
T Consensus 243 ~~~~~~~~~d-~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~--~~~~~Vv~v~tg-g~~d~~~~~ 316 (338)
T PRK06608 243 RTFEYLKKLD-DFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ--SKPQKLLVILSG-GNIDPILYN 316 (338)
T ss_pred HHHHHHHhCC-CEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh--cCCCeEEEEeCC-CccCHHHHH
Confidence 4455556654 47899999999999986 7799999999999999999876542 467899999999 666665543
No 47
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=9.5e-49 Score=415.99 Aligned_cols=292 Identities=16% Similarity=0.179 Sum_probs=252.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-++|||++++++++. +|. +||+|+|++|||||||||++.+++.++.+.. + ..+|+++|+||+|.|+|++|+++|
T Consensus 21 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~--~--~~~vv~aSsGN~g~alA~~a~~~G 94 (403)
T PRK07334 21 VLRTPCVHSRTLSQI-TGA-EVWLKFENLQFTASFKERGALNKLLLLTEEE--R--ARGVIAMSAGNHAQGVAYHAQRLG 94 (403)
T ss_pred CCCCCccchHHHHHh-hCC-eEEEEeccCCCCCCchHHHHHHHHHhcCHHH--h--CCcEEEECCcHHHHHHHHHHHHcC
Confidence 489999999998876 675 8999999999999999999999998864321 1 246999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEV 326 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 326 (526)
++|+||||.+ .++.|+.+|+.|||+|+.++++++++.+.+++++++.++++++++ ||.+++||+|+++||++|++ .
T Consensus 95 ~~~~iv~p~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--~ 171 (403)
T PRK07334 95 IPATIVMPRF-TPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVALEMLEDAP--D 171 (403)
T ss_pred CCEEEEECCC-CCHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHHHHHhcCC--C
Confidence 9999999997 788999999999999999999999999999999988888999987 69999999999999999997 6
Q ss_pred CcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHH
Q 009781 327 PDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSID 406 (526)
Q Consensus 327 pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 406 (526)
||+||+|+|+||+++|++++|+++ + |.+|||+|||+++++++.++..+. . ....+|+++++.++.|....
T Consensus 172 ~d~vv~~vG~GG~~~Gi~~~lk~~---~---~~~~vi~ve~~~~~~~~~~~~~~~--~--~~~~~~~~~gi~~~~~~~~~ 241 (403)
T PRK07334 172 LDTLVVPIGGGGLISGMATAAKAL---K---PDIEIIGVQTELYPSMYAAIKGVA--L--PCGGSTIAEGIAVKQPGQLT 241 (403)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHh---C---CCCEEEEEEECCCchHHHHHhCCC--c--cCCCCCccceecCCCccHHH
Confidence 999999999999999999999864 2 678999999999999999886542 1 12456899999988777554
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
..+.+++.+.++.|+|+|++++++++ +++|+++||++|+++||++++.+. .++++||+++||++ .+.+.+.+
T Consensus 242 --~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~---~~~~~vv~i~~ggn-~d~~~l~~ 314 (403)
T PRK07334 242 --LEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER---FRGRKVGLVLSGGN-IDTRLLAN 314 (403)
T ss_pred --HHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh---cCCCeEEEEECCCC-CCHHHHHH
Confidence 34457889999999999999999986 779999999999999999886654 26789999999964 55665433
No 48
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.9e-48 Score=396.78 Aligned_cols=282 Identities=21% Similarity=0.228 Sum_probs=238.5
Q ss_pred cCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCC
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGV 248 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 248 (526)
|.|||++++++.+. .|. +||+|+|++|||||||||++.+++..+.+.++.. +..+|+++|+||+|.|+|++|+++|+
T Consensus 1 g~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~-~~~~vv~~SsGN~g~alA~~a~~~G~ 77 (291)
T cd01561 1 GNTPLVRLNRLSPG-TGA-EIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLK-PGTTIIEPTSGNTGIGLAMVAAAKGY 77 (291)
T ss_pred CCCCEEEccccCCC-CCC-eEEEEecccCCCCcchHHHHHHHHHHHHHcCCCC-CCCEEEEeCCChHHHHHHHHHHHcCC
Confidence 68999999998876 665 8999999999999999999999999876432211 12579999999999999999999999
Q ss_pred CEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCH----HHHHHHHHHHHhcC-CeeeccCC-chhHHhHHH-HHHHHHHHH
Q 009781 249 PSIVFLPANKISIAQLVQPIANGAFVLSLDTDF----DGCMQLIREVTSEL-PIYLANSL-NSLRLEGQK-TAAIEILQQ 321 (526)
Q Consensus 249 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~----dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~G~~-T~a~EI~eQ 321 (526)
+|+||||.+ +++.|+.+|+.+||+|+.+++++ +++.+.++++.++. ++++++++ ||..++|+. |+++||++|
T Consensus 78 ~~~i~vp~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~q 156 (291)
T cd01561 78 RFIIVMPET-MSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQ 156 (291)
T ss_pred eEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHH
Confidence 999999997 78999999999999999999987 88888899888877 78999985 899999987 999999999
Q ss_pred cCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCC
Q 009781 322 FDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGD 401 (526)
Q Consensus 322 l~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~ 401 (526)
+++ .||+||+|+|+||+++|++++|+++. +.+|||+||+++++++. +. ....+++++|..+.
T Consensus 157 l~~-~~d~vv~~~G~Gg~~~Gi~~~~~~~~------~~~~vi~Ve~~~~~~~~-----~~------~~~~~~~~gi~~~~ 218 (291)
T cd01561 157 LDG-KVDAFVAGVGTGGTITGVARYLKEKN------PNVRIVGVDPVGSVLFS-----GG------PPGPHKIEGIGAGF 218 (291)
T ss_pred cCC-CCCEEEEeCChHHHHHHHHHHHHHhC------CCCEEEEEecCCCcccC-----CC------CCCCCcCCCCCCCC
Confidence 986 69999999999999999999998652 66899999999987661 11 12355667776542
Q ss_pred -CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCch
Q 009781 402 -PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFT 479 (526)
Q Consensus 402 -P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~ 479 (526)
|.. ..+...+.++.|+|+|++++++.+ +++|+++||++|+++|+++++.+++ .++++||+|+||+|+||.
T Consensus 219 ~~~~------~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~--~~~~~vv~v~~~~g~ky~ 290 (291)
T cd01561 219 IPEN------LDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRL--GPGKTIVTILPDSGERYL 290 (291)
T ss_pred CCCc------cCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhc--CCCCeEEEEECCCccccC
Confidence 111 112345688999999999999986 7799999999999999999988764 368899999999999986
Q ss_pred H
Q 009781 480 Q 480 (526)
Q Consensus 480 ~ 480 (526)
+
T Consensus 291 ~ 291 (291)
T cd01561 291 S 291 (291)
T ss_pred C
Confidence 4
No 49
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=2.7e-48 Score=410.21 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=252.6
Q ss_pred cCCCceecccccccccCCCcEEEEecCCC-CCCchhhhhHHHHHHHHHH--HH--------------hcC--CCceEEEE
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGIS-HTGSFKDLGMTVLVSQVNR--LK--------------RMN--KPVIGVGC 229 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~n-PTGSFKDRga~~~v~~a~~--~~--------------~~g--~~~~~Vv~ 229 (526)
..|||++++.+++. +|+.+||+|+|+++ |||||||||+.+.+..+.. ++ +.. ....+|++
T Consensus 40 ~~TPL~~~~~L~~~-~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~ 118 (396)
T TIGR03528 40 QPTPLAELDNLAKH-LGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVT 118 (396)
T ss_pred cCCCCcchHHHHHH-hCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEE
Confidence 56999999999887 78778999999988 5999999999999988633 10 000 11248999
Q ss_pred eccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeecc-----CC-
Q 009781 230 ASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLAN-----SL- 303 (526)
Q Consensus 230 aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n-----s~- 303 (526)
+|+||||+|+|++|+++|++|+||||++ +++.|+.+|+.|||+|+.++++++++.+.+++++++.++++++ ++
T Consensus 119 aSsGN~g~alA~~aa~~Gi~~~IvvP~~-~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g~~~v~~~~~~~~~ 197 (396)
T TIGR03528 119 ATDGNHGRGVAWAANQLGQKSVVYMPKG-SAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENGWVMVQDTAWEGYE 197 (396)
T ss_pred ECccHHHHHHHHHHHHcCCCEEEEEeCC-CcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcEeeccccccccc
Confidence 9999999999999999999999999997 7889999999999999999999999999999999888888775 23
Q ss_pred --chhHHhHHHHHHHHHHHHcC---CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHH
Q 009781 304 --NSLRLEGQKTAAIEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYK 378 (526)
Q Consensus 304 --Np~~i~G~~T~a~EI~eQl~---~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~ 378 (526)
+|..++||+|+++||++|++ +..||+||+|+|+||++.|++.+|+++.+ +..||||+|||+++++++++++
T Consensus 198 ~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~----~~~p~vi~Vep~~a~~l~~s~~ 273 (396)
T TIGR03528 198 KIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYG----EERPITVIVEPDAADCLYRSAI 273 (396)
T ss_pred cCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcC----CCCCEEEEEccCCCchHHHHHH
Confidence 36778999999999999997 33699999999999999999988865432 2457999999999999999998
Q ss_pred hCCccccccC-CccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-H----hcCCeecchHHHHHHHH
Q 009781 379 SGWKDFKPVR-ANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-D----STGMFVCPHTGVALSAL 452 (526)
Q Consensus 379 ~G~~~~~~~~-~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~----~~Gi~veP~sA~alAal 452 (526)
.+.......+ ...|+++++.++.|... .+.+++++.+.++.|+|+|+.++++++ . ++++++||++|+++||+
T Consensus 274 ~~~g~~~~~~g~~~Tiadgl~~~~p~~~--~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aal 351 (396)
T TIGR03528 274 ADDGKPHFVTGDMATIMAGLACGEPNTI--GWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLL 351 (396)
T ss_pred hcCCCEEEeCCCccceecccccCCccHH--HHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHH
Confidence 7322344444 45799999998888764 467778899999999999999999987 4 46999999999999655
Q ss_pred ---H------HHHHcCCCCCCCeEEEEECCCCCCchHHH
Q 009781 453 ---I------KLRCKGVIGKTDKTVVVSTAHGLKFTQSK 482 (526)
Q Consensus 453 ---~------~l~~~g~i~~~~~vVvv~TG~g~K~~~~~ 482 (526)
+ ++.+++.+.++++||+|+||++. +++.+
T Consensus 352 aa~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~-d~~~~ 389 (396)
T TIGR03528 352 AAVMTNPDYKELREKLQLDKNSRVLLISTEGDT-DPDNY 389 (396)
T ss_pred HHHHhCchhHHHHHhcCCCCCCEEEEEECCCCC-CHHHH
Confidence 2 25556667778999999999654 45543
No 50
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=4.5e-48 Score=410.59 Aligned_cols=305 Identities=19% Similarity=0.147 Sum_probs=253.7
Q ss_pred hcccccCCCceecccccccccC-------CCcEEEEecCCCC-CCchhhhhHHHHHHHHH-H-HHhcCC---C-------
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQ-------MNDLWVKHCGISH-TGSFKDLGMTVLVSQVN-R-LKRMNK---P------- 223 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg-------~~~l~lK~E~~nP-TGSFKDRga~~~v~~a~-~-~~~~g~---~------- 223 (526)
.++++++|||++++++++. +| ..+||+|+|++|| ||||||||+.+++..+. . ..+.|. +
T Consensus 64 ~~~~~~~TPL~~~~~ls~~-~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~ 142 (431)
T TIGR02035 64 ATGGIIESPLVEIFNMQKE-LEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILA 142 (431)
T ss_pred ccCCccCCCccchHHHHHH-hhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhc
Confidence 4789999999999998774 42 1489999999999 99999999999987632 1 122332 0
Q ss_pred ---------ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhc
Q 009781 224 ---------VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSE 294 (526)
Q Consensus 224 ---------~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~ 294 (526)
..+|+++||||||.|+|++|+.+|++|+||||++ +++.|+.+|+.|||+|+.++++|+++.+.+++++++
T Consensus 143 e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~-a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~ 221 (431)
T TIGR02035 143 EKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSAD-AKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNADA 221 (431)
T ss_pred chhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh
Confidence 1479999999999999999999999999999997 799999999999999999999999999999999887
Q ss_pred C-CeeeccCCch-hHHhHHHHHHHHHHHHcCC-------CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEE
Q 009781 295 L-PIYLANSLNS-LRLEGQKTAAIEILQQFDW-------EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCA 365 (526)
Q Consensus 295 ~-~~~~~ns~Np-~~i~G~~T~a~EI~eQl~~-------~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~V 365 (526)
. ++|++|..|+ ..++||+|+++||++|+++ ..||+|++|+|.||+++|++++|+++.. +.+|||+|
T Consensus 222 ~~~~~~~d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~-----~~vkvi~V 296 (431)
T TIGR02035 222 DPMCYFVDDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFG-----DNVHCFFA 296 (431)
T ss_pred cCCeEECCCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcC-----CCCEEEEE
Confidence 6 4677777664 4579999999999999964 1578999999999999999999986421 55799999
Q ss_pred ecCCCchHHHHHHhCCcccccc----CCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCe
Q 009781 366 QAANANPLYLYYKSGWKDFKPV----RANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMF 440 (526)
Q Consensus 366 q~~~~~~l~~a~~~G~~~~~~~----~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~ 440 (526)
||++++++..+++.|....... ....|+++||.++.|..+. ...+++..+.++.|+|+|+++++++| +++|++
T Consensus 297 Ep~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~--~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~ 374 (431)
T TIGR02035 297 EPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFV--GRLMEPLLSGIYTVDDYTLYDLLRILAESEGKR 374 (431)
T ss_pred eeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhH--HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCe
Confidence 9999888999998885321111 0347999999999988654 34566778899999999999999986 779999
Q ss_pred ecchHHHHHHHHHHHHHcC-----------CCCCCCeEEEEECCCCCC
Q 009781 441 VCPHTGVALSALIKLRCKG-----------VIGKTDKTVVVSTAHGLK 477 (526)
Q Consensus 441 veP~sA~alAal~~l~~~g-----------~i~~~~~vVvv~TG~g~K 477 (526)
+||++|++++|+.++.+.. .+..+.++|+.+||+++-
T Consensus 375 vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~ 422 (431)
T TIGR02035 375 LEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMV 422 (431)
T ss_pred EcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCC
Confidence 9999999999998877652 112477999999999876
No 51
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=4.9e-48 Score=395.33 Aligned_cols=286 Identities=19% Similarity=0.201 Sum_probs=234.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-|+|||++++.++.. .|. +||+|+|++|||||||||++.+++..+.+.+...+ ..+|+++|+||+|.|+|++|+++|
T Consensus 5 vg~TPL~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~G 81 (299)
T TIGR01136 5 IGNTPLVRLNRLAPG-CDA-RVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKP-GDTIIEATSGNTGIALAMVAAAKG 81 (299)
T ss_pred cCCCceEEccccCCC-CCc-eEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCC-CCEEEEeCCChHHHHHHHHHHHcC
Confidence 478999999998876 664 89999999999999999999999988765432222 256999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC--HHHHHHHHHHHHhcC-CeeeccCC-chhH-HhHHHHHHHHHHHHc
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTD--FDGCMQLIREVTSEL-PIYLANSL-NSLR-LEGQKTAAIEILQQF 322 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~~~~~~~~~~~~-~~~~~ns~-Np~~-i~G~~T~a~EI~eQl 322 (526)
++|+||||++ +++.|+.+|+.+||+|+.++++ ++++.+.+++++++. +++++|++ ||.. +.||+|+++||++|+
T Consensus 82 ~~~~i~vp~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 82 YKLILTMPET-MSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CcEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 9999999997 7899999999999999999987 588999999988886 68888886 6664 779999999999999
Q ss_pred CCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCC
Q 009781 323 DWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDP 402 (526)
Q Consensus 323 ~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P 402 (526)
++ .||+||+|+|+||+++|++++|+++ + +.+|||+||+++++++..+ +.+. ....++..+. .|
T Consensus 161 ~~-~~d~iv~~vG~Gg~~~G~~~~~~~~---~---~~~~vi~Ve~~~~~~~~~~-~~~~------~~~~~i~~~~---~~ 223 (299)
T TIGR01136 161 DG-RIDHFVAGVGTGGTITGVGRYLKEQ---N---PNIKIVAVEPAESPVLSGG-EPGP------HKIQGIGAGF---IP 223 (299)
T ss_pred CC-CCCEEEEcCchhHHHHHHHHHHHHh---C---CCCEEEEEecCCCccccCC-CCCC------ccCCCCCCCC---CC
Confidence 86 5999999999999999999999864 2 5679999999998887643 1111 0112222111 12
Q ss_pred ccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 403 VSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 403 ~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
..+. ++..+.++.|+|+|++++++++ +++|+++||++|+++|+++++.++.. .++++||+++||+|+||+++
T Consensus 224 ~~~~------~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~-~~~~~vv~i~~d~g~ky~~~ 296 (299)
T TIGR01136 224 KILD------LSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLE-NADKVIVAILPDTGERYLST 296 (299)
T ss_pred ccCC------hhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccCc
Confidence 1111 2234578999999999999986 77999999999999999999887632 35789999999999999875
No 52
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=8.1e-48 Score=392.98 Aligned_cols=278 Identities=18% Similarity=0.184 Sum_probs=230.6
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
..|+|||++++.+... .|. +||+|+|++|||||||||++.+++..+.+.+...+ ..+|+++||||+|.|+|++|+.+
T Consensus 9 ~~g~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~ 85 (296)
T PRK11761 9 TIGNTPLVKLQRLPPD-RGN-TILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKP-GDTLIEATSGNTGIALAMIAAIK 85 (296)
T ss_pred hcCCCceEeccccccC-CCC-EEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCC-CCEEEEeCCChHHHHHHHHHHHc
Confidence 3699999999988765 564 89999999999999999999999998865432222 25799999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC--CHHHHHHHHHHHHhcCCeeeccCC-chhHHh-HHHHHHHHHHHHc
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDT--DFDGCMQLIREVTSELPIYLANSL-NSLRLE-GQKTAAIEILQQF 322 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~-G~~T~a~EI~eQl 322 (526)
|++|+||||++ +++.|+.+|+.+||+|+.+++ +++++.+.+++++++.+++++|++ |+..++ |++|+++||++|+
T Consensus 86 G~~~~i~~p~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~ 164 (296)
T PRK11761 86 GYRMKLIMPEN-MSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQT 164 (296)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHHhc
Confidence 99999999997 789999999999999999996 789999999999888888888886 566544 5799999999999
Q ss_pred CCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCC
Q 009781 323 DWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDP 402 (526)
Q Consensus 323 ~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P 402 (526)
++ .+|+||+|+|+||+++|++++|+++ + |.+|||+|||++++++. |. .... ... .|
T Consensus 165 ~~-~~d~iv~~vG~Gg~~~Gi~~~lk~~---~---~~~kvigVep~~~~~i~-----g~---~~~~------~~~---~~ 220 (296)
T PRK11761 165 EG-RITHFVSSMGTTGTIMGVSRYLKEQ---N---PAVQIVGLQPEEGSSIP-----GI---RRWP------EEY---LP 220 (296)
T ss_pred CC-CCCEEEecCCcHHHHHHHHHHHHHh---C---CCCEEEEEecCCCCcCc-----CC---CCCC------CCc---CC
Confidence 75 5899999999999999999999864 2 67899999999877552 21 0000 000 11
Q ss_pred ccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 403 VSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 403 ~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
.... ....+.++.|+|+|++++++++ +++|+++||+||+++++++++.++ .++++||+|+||+|.||++.
T Consensus 221 ~~~~------~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~---~~~~~vV~v~~d~g~ky~~~ 291 (296)
T PRK11761 221 KIFD------ASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE---NPNAVIVAIICDRGDRYLST 291 (296)
T ss_pred cccC------hhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH---CCCCeEEEEECCCCcccCCh
Confidence 1110 2234678999999999999986 779999999999999999998765 25789999999999999986
No 53
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.9e-47 Score=402.91 Aligned_cols=295 Identities=16% Similarity=0.133 Sum_probs=233.8
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
.|+|||++++.+... .|. +||+|+|++|||||||||++.+++..+.+.++... ...|+++||||+|.|+|++|+.+|
T Consensus 51 ig~TPLv~~~~l~~~-~g~-~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~-~g~VveaSSGN~g~alA~~aa~~G 127 (423)
T PLN02356 51 IGNTPLIRINSLSEA-TGC-EILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFP-GGVVTEGSAGSTAISLATVAPAYG 127 (423)
T ss_pred cCCCceEECcccccc-cCC-EEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCC-CCEEEEeCCHHHHHHHHHHHHHcC
Confidence 399999999988765 564 79999999999999999999999998865332212 246788999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC-------CH--------HHHHHHHHHHHhc------------------
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDT-------DF--------DGCMQLIREVTSE------------------ 294 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-------~~--------dd~~~~~~~~~~~------------------ 294 (526)
++|+||||++ +++.|+.+|+.|||+|+.+++ ++ +++.+++++..++
T Consensus 128 ~~~~ivvP~~-~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~ 206 (423)
T PLN02356 128 CKCHVVIPDD-VAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEE 206 (423)
T ss_pred CcEEEEECCC-CcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 9999999997 799999999999999999964 22 1222333332220
Q ss_pred -----------CCeeeccCC-chh--HHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCC
Q 009781 295 -----------LPIYLANSL-NSL--RLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIP 360 (526)
Q Consensus 295 -----------~~~~~~ns~-Np~--~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~p 360 (526)
.+.+++|++ ||. ++.|+.| |+||++|+++ .||+||+|+|+||+++|++++||++ .|.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gT-g~EI~eQl~g-~~D~vVv~vGtGGti~Gva~~lK~~------~P~v 278 (423)
T PLN02356 207 EKENSLFSSSCTGGFFADQFENLANFRAHYEGT-GPEIWEQTQG-NLDAFVAAAGTGGTLAGVSRFLQEK------NPNI 278 (423)
T ss_pred cccccccccCCCCcEecCccCCcchHHHHHhhH-HHHHHHhcCC-CCCEEEeCCCchHHHHHHHHHHHHh------CCCC
Confidence 355677775 554 4778887 9999999975 6999999999999999999998864 2678
Q ss_pred eEEEEecCCCc---------hHHHHHHhCCccccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHH
Q 009781 361 RLVCAQAANAN---------PLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVS 431 (526)
Q Consensus 361 rvi~Vq~~~~~---------~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~ 431 (526)
|||+|||+++. .++++++.|... .. ..+|+++|+.++.+... + .....+.++.|+|+|+++++
T Consensus 279 kVigVep~~s~~~~~~~~~~~~~~s~~~G~~~--~~-~~~tia~Gig~~~~~~~---~--~~~~vD~~v~Vsd~ea~~a~ 350 (423)
T PLN02356 279 KCFLIDPPGSGLFNKVTRGVMYTREEAEGRRL--KN-PFDTITEGIGINRLTQN---F--LMAKLDGAFRGTDKEAVEMS 350 (423)
T ss_pred EEEEEecCCCccccccccchhhhhhhhcCCcc--CC-CCCeecCcCcCCCCChh---H--hHHhCCcEEEECHHHHHHHH
Confidence 99999999865 445566777421 11 22699999987754321 1 12344566789999999999
Q ss_pred HHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 432 AQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 432 ~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
+++ +++|+++||+||+++||++++.++ +.++++||+|+||+|.||.+.+++
T Consensus 351 r~L~~~~Gl~vg~Ssaa~laaa~~la~~--~~~g~~VV~Il~d~G~kyl~~~~~ 402 (423)
T PLN02356 351 RYLLKNDGLFVGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFHD 402 (423)
T ss_pred HHHHHHCCeeEeECHHHHHHHHHHHHHH--hCCCCeEEEEECCCCcchhhhhcC
Confidence 986 789999999999999999998764 456889999999999999988653
No 54
>PLN03013 cysteine synthase
Probab=100.00 E-value=6.6e-47 Score=398.91 Aligned_cols=290 Identities=19% Similarity=0.175 Sum_probs=238.2
Q ss_pred hcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHH
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYC 243 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 243 (526)
+....|+|||++++.+... .+. +||+|+|++|||||||||++.+++..+.+.+.+..+..+||++||||+|.|+|++|
T Consensus 117 i~~~iG~TPLv~l~~l~~~-~g~-~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a 194 (429)
T PLN03013 117 VSQLIGKTPMVYLNSIAKG-CVA-NIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA 194 (429)
T ss_pred HHhcCCCCCeEECcccccc-cCC-eEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHH
Confidence 4567899999999988765 454 89999999999999999999999998866443333335799999999999999999
Q ss_pred HhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC--HHHHHHHHHHHHhcC-CeeeccCC-chhHHh-HHHHHHHHH
Q 009781 244 ASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD--FDGCMQLIREVTSEL-PIYLANSL-NSLRLE-GQKTAAIEI 318 (526)
Q Consensus 244 a~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~-G~~T~a~EI 318 (526)
+.+|++++||||++ +++.|+.+|+.+||+|+.++++ ++++.+.+++++++. ++|++|++ ||.+++ ||+|+|+||
T Consensus 195 ~~~G~~~~VvvP~~-~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI 273 (429)
T PLN03013 195 ASRGYRLILTMPAS-MSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEI 273 (429)
T ss_pred HHcCCCEEEEECCC-CcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999997 7999999999999999999876 557888899988775 78889986 898875 999999999
Q ss_pred HHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccc
Q 009781 319 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQ 398 (526)
Q Consensus 319 ~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~ 398 (526)
++|+++ .||+||+|+|+||+++|++++|++. .|..|||+|||++++++. .|.. .++..++|.
T Consensus 274 ~eq~~~-~~D~vV~~vGtGGtisGiar~lKe~------~P~vkVigVep~gs~~l~----~g~~-------~~~~i~Glg 335 (429)
T PLN03013 274 WDDTKG-KVDIFVAGIGTGGTITGVGRFIKEK------NPKTQVIGVEPTESDILS----GGKP-------GPHKIQGIG 335 (429)
T ss_pred HHhcCC-CCCEEEEeCCccHHHHHHHHHHHhh------CCCCEEEEEEeCCCchhh----CCCC-------CCcccCccc
Confidence 999975 6999999999999999999998862 266799999999987662 3421 123345666
Q ss_pred cCC-CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeE-EEEECCCC
Q 009781 399 IGD-PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKT-VVVSTAHG 475 (526)
Q Consensus 399 i~~-P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~v-Vvv~TG~g 475 (526)
.+. |.++. ++..+.++.|+|+|++++++++ +++|+++||++|++++|++++.+... .++.+| |++.+++|
T Consensus 336 ~~~ip~~~~------~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~-~~g~~IVv~i~~d~g 408 (429)
T PLN03013 336 AGFIPKNLD------QKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPE-NAGKLIAVSLFASGR 408 (429)
T ss_pred CCcCCHhHH------HHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc-CCCCEEEEEEcCCCc
Confidence 553 44332 2345789999999999999986 78999999999999999999876543 234554 66778889
Q ss_pred CCchHH
Q 009781 476 LKFTQS 481 (526)
Q Consensus 476 ~K~~~~ 481 (526)
.||...
T Consensus 409 ~~Y~~~ 414 (429)
T PLN03013 409 DIYTPR 414 (429)
T ss_pred hhchhh
Confidence 999776
No 55
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.9e-47 Score=389.43 Aligned_cols=284 Identities=20% Similarity=0.233 Sum_probs=231.0
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
..|+|||+++++. .. .|. +||+|+|++|||||||||++.+++..+.+.+...+ ..+|+++|+||+|.|+|++|+++
T Consensus 4 ~~g~TPl~~~~~~-~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 4 LIGNTPLVRLNRI-EG-CNA-NVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKP-GKTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccCCCceEEcccc-CC-CCc-eEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCC-CCEEEEeCCChhHHHHHHHHHHc
Confidence 4689999999983 33 554 89999999999999999999999998765432222 25699999999999999999999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCH--HHHHHHHHHHHhcCC--eeeccCC-chh-HHhHHHHHHHHHHH
Q 009781 247 GVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDF--DGCMQLIREVTSELP--IYLANSL-NSL-RLEGQKTAAIEILQ 320 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~--dd~~~~~~~~~~~~~--~~~~ns~-Np~-~i~G~~T~a~EI~e 320 (526)
|++|+||+|++ +++.|+.+|+.+||+|+.+++++ +++.+.+++++++.+ ++++|++ ||. .+.|++|+++||++
T Consensus 80 Gl~~~i~vp~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 158 (298)
T TIGR01139 80 GYKLILTMPET-MSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWR 158 (298)
T ss_pred CCeEEEEeCCc-cCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHH
Confidence 99999999997 78899999999999999999986 577888888888776 6678876 777 47799999999999
Q ss_pred HcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccC
Q 009781 321 QFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIG 400 (526)
Q Consensus 321 Ql~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~ 400 (526)
|+++ .||+||+|+|+||+++|++++|+++. +.+|||+||+.+++.+... +. ..+..+++..+
T Consensus 159 q~~~-~~d~vv~~vG~Gg~~~Gi~~~~~~~~------~~~~vi~Ve~~~~~~~~~~-~~----------~~~~~~gl~~~ 220 (298)
T TIGR01139 159 DTDG-KLDAFVAGVGTGGTITGVGEVLKEQK------PNIKIVAVEPAESPVLSGG-KP----------GPHKIQGIGAG 220 (298)
T ss_pred HhCC-CCCEEEEecchhHhHHHHHHHHHhcC------CCCEEEEEecCCCcccCCC-CC----------CCCCCCCCCCC
Confidence 9985 59999999999999999999998652 4579999999997655321 11 12233444432
Q ss_pred C-CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCc
Q 009781 401 D-PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478 (526)
Q Consensus 401 ~-P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~ 478 (526)
. |..+. ....+.++.|+|+|++++++++ +++|+++||+||+++++++++.++ +.++++||+++||+|.||
T Consensus 221 ~~~~~~~------~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~--~~~~~~vv~v~~d~G~ky 292 (298)
T TIGR01139 221 FIPKNLN------RSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKR--PEPDKLIVVILPSTGERY 292 (298)
T ss_pred CCCCccC------hhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHh--cCCCCEEEEEECCCCccc
Confidence 1 22211 1224578999999999999986 779999999999999999998765 346789999999999999
Q ss_pred hHH
Q 009781 479 TQS 481 (526)
Q Consensus 479 ~~~ 481 (526)
.+.
T Consensus 293 ~~~ 295 (298)
T TIGR01139 293 LST 295 (298)
T ss_pred cCc
Confidence 875
No 56
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.3e-46 Score=393.77 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=237.4
Q ss_pred chhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHH
Q 009781 162 DIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSA 241 (526)
Q Consensus 162 ~~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa 241 (526)
+.+++..|+|||++++++... .|. +||+|+|++|||||||||++.+++..+.+.+....+..+||++||||+|.|+|+
T Consensus 51 ~~v~~~ig~TPl~~l~~l~~~-~g~-~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 51 TDASQLIGKTPLVYLNKVTEG-CGA-YIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhHHHhcCCCccEEccccccc-cCC-EEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 346778899999999988755 554 899999999999999999999999988754333334468999999999999999
Q ss_pred HHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC--HHHHHHHHHHHHhcC-CeeeccCC-chhHHh-HHHHHHH
Q 009781 242 YCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD--FDGCMQLIREVTSEL-PIYLANSL-NSLRLE-GQKTAAI 316 (526)
Q Consensus 242 ~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~-G~~T~a~ 316 (526)
+|+.+|++|+|+||++ ++..|+.+|+.|||+|+.++.. ...+.+.+++++++. ++|++|++ ||.+++ ||+|+++
T Consensus 129 ~a~~~G~~~~ivvp~~-~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 129 MAAMKGYKMILTMPSY-TSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHHHcCCCEEEEECCC-CCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999997 7999999999999999999753 235666676766655 67888876 899875 9999999
Q ss_pred HHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccc
Q 009781 317 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASA 396 (526)
Q Consensus 317 EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~ 396 (526)
||++|+.+ .||+||+|+|+||+++|++++|+++ + +.+|||+||+++++++ ..|.. . ... ..+
T Consensus 208 EI~eq~~~-~~D~vV~~vGtGGt~aGv~~~lk~~---~---p~~kVigVep~~~~~~----~~g~~--~----~~~-i~g 269 (368)
T PLN02556 208 EIWEDTLG-QVDIFVMGIGSGGTVSGVGKYLKSK---N---PNVKIYGVEPAESNVL----NGGKP--G----PHH-ITG 269 (368)
T ss_pred HHHHhcCC-CCCEEEEcCCcchHHHHHHHHHHHh---C---CCCEEEEEeeCCCccc----cCCCC--C----Cee-eee
Confidence 99999865 6999999999999999999999864 2 6679999999997654 23321 1 112 244
Q ss_pred cccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCC
Q 009781 397 IQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHG 475 (526)
Q Consensus 397 i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g 475 (526)
+.++.+... ++ .+..+.++.|+|+|++++++++ +++|++++|++|++++|+.++.+++. .++++||+|+|++|
T Consensus 270 ~g~~~~p~~---~~--~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~-~~~~~IV~v~~d~g 343 (368)
T PLN02556 270 NGVGFKPDI---LD--MDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPE-NKGKLIVTVHPSFG 343 (368)
T ss_pred ccCCCCccc---cc--hhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc-CCcCEEEEEECCCC
Confidence 544443211 11 2345678999999999999986 78999999999998888888877652 46789999999999
Q ss_pred CCchHHH
Q 009781 476 LKFTQSK 482 (526)
Q Consensus 476 ~K~~~~~ 482 (526)
.||.+.+
T Consensus 344 ~kY~~~~ 350 (368)
T PLN02556 344 ERYLSSV 350 (368)
T ss_pred cccCChh
Confidence 9999874
No 57
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.2e-46 Score=399.33 Aligned_cols=327 Identities=17% Similarity=0.064 Sum_probs=251.0
Q ss_pred CCccccccccCCCCCccchhcccccCCCceecccccccccCC-CcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 009781 145 SGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKP 223 (526)
Q Consensus 145 ~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~-~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~ 223 (526)
.+.|||.++ |+ +..+...+..+.|||++++++.+. +|. .+||+|+|++|||||||||++..++.++.+ .|.
T Consensus 46 ~~~~r~~~~--~~-~v~~~~~l~g~pTPL~r~~~L~~~-lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~---~G~- 117 (419)
T TIGR01415 46 VSGERWIKI--PG-EVLKRYAQIGRPTPLIRAKGLEEL-LGTPARIYYKYESVSPTGSHKINTAIAQAYYAKI---EGA- 117 (419)
T ss_pred ccHhhHHhh--HH-HHHHHHHhcCCCCCeEEccchhhh-hCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHH---cCC-
Confidence 457999993 41 114556777789999999999876 775 489999999999999999999998887753 343
Q ss_pred ceEEE-EeccchHHHHHHHHHHhcCCCEEEEcCCCc--CCHHhHHhHHhCCCEEEEECCCHHHHHH--------------
Q 009781 224 VIGVG-CASTGDTSAALSAYCASAGVPSIVFLPANK--ISIAQLVQPIANGAFVLSLDTDFDGCMQ-------------- 286 (526)
Q Consensus 224 ~~~Vv-~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~--~s~~k~~q~~~~GA~Vi~v~g~~dd~~~-------------- 286 (526)
..++ ++|+||+|.|+|++|+.+|++|+||||+.. .++.|+.+|+.|||+|+.++++++++.+
T Consensus 118 -~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~ 196 (419)
T TIGR01415 118 -KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLG 196 (419)
T ss_pred -CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchH
Confidence 3455 468999999999999999999999999842 3567888999999999999998877633
Q ss_pred ----HHHHHHhc-C-CeeeccCCchhHHhHHHHHHHHHHHHcCCC--CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCC
Q 009781 287 ----LIREVTSE-L-PIYLANSLNSLRLEGQKTAAIEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDR 358 (526)
Q Consensus 287 ----~~~~~~~~-~-~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~--~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~ 358 (526)
.+.+.+.+ . ..|..++++...+.||+++|+||++|+++. .||+||+|+|+||+++|++++|.+.+..|. +
T Consensus 197 ~ai~~a~e~a~~~~~~~y~~~~~~n~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~--~ 274 (419)
T TIGR01415 197 IAISEAIEYALSDEDTKYSLGSVLNHVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGK--I 274 (419)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCC--C
Confidence 33344433 2 456667653345779999999999999752 599999999999999999999977666675 4
Q ss_pred CCeEEEEecCCCchHHHHHH------hCCcccccc----------CCccccccccccCCCccHHHHHHHH-HhCCCeEEE
Q 009781 359 IPRLVCAQAANANPLYLYYK------SGWKDFKPV----------RANTTFASAIQIGDPVSIDRAVYAL-KNCDGIVEE 421 (526)
Q Consensus 359 ~prvi~Vq~~~~~~l~~a~~------~G~~~~~~~----------~~~~Tia~~i~i~~P~~~~~~l~~l-~~~~g~~v~ 421 (526)
.+|||+||+++|+++.+.+. ++. ..|. ....+++.++.+..+... +..+ +.....++.
T Consensus 275 ~~rviaVep~~~~~l~~g~~~yd~~~~~~--~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~---~~~l~~~~~~~~~~ 349 (419)
T TIGR01415 275 DRRFIAAEPKACPTLTRGEYRYDFGDTAG--LTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPT---LSLLVNLGIVEARA 349 (419)
T ss_pred CCEEEEEeeCCChhhhcCccccccccccc--CCcceeeeecCCCCCCcceeccccccCCccHH---HHHHhhcCceEEEE
Confidence 57999999999998886541 111 1111 123577788877655443 3333 333346789
Q ss_pred eCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCC-CCeEEEEECCCCCCchHHHHhhhc
Q 009781 422 ATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGK-TDKTVVVSTAHGLKFTQSKIDYHS 487 (526)
Q Consensus 422 Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~-~~~vVvv~TG~g~K~~~~~~~~~~ 487 (526)
|+|+|+++|++++ +++|++++|+||+++||++++.+++.... +.+||+++||||+++.+...+++.
T Consensus 350 V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~~~~ 417 (419)
T TIGR01415 350 YDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKAYAKYLH 417 (419)
T ss_pred ECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHHHHHHhc
Confidence 9999999999986 78999999999999999999887764422 336778899999999887665553
No 58
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.6e-46 Score=382.37 Aligned_cols=277 Identities=19% Similarity=0.222 Sum_probs=228.5
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
-|+|||++++++... .|. +||+|+|++|||||||||++.+++..+.+.++... ..+|+++||||+|.|+|++|+++|
T Consensus 6 ig~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~G 82 (290)
T TIGR01138 6 VGNTPLVRLQRMGPE-NGS-EVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKP-GDVLIEATSGNTGIALAMIAALKG 82 (290)
T ss_pred CCCCceEEccccccC-CCC-eEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCC-CCEEEEECCChHHHHHHHHHHHcC
Confidence 489999999998876 664 89999999999999999999999998865432222 257999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC--CHHHHHHHHHHHHhcCCeeeccCC-chhHHhH-HHHHHHHHHHHcC
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDT--DFDGCMQLIREVTSELPIYLANSL-NSLRLEG-QKTAAIEILQQFD 323 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G-~~T~a~EI~eQl~ 323 (526)
++|+||||++ .++.|+.+|+.+||+|+.+++ +++++.+.++++.++.+.++.|++ |+..+.+ |+|+++||++|++
T Consensus 83 ~~~~i~~p~~-~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~ 161 (290)
T TIGR01138 83 YRMKLLMPDN-MSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTG 161 (290)
T ss_pred CeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcC
Confidence 9999999997 789999999999999999986 488898999999888775666765 5665554 6999999999998
Q ss_pred CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCc
Q 009781 324 WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPV 403 (526)
Q Consensus 324 ~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~ 403 (526)
+ .||+||+|+|+||+++|++++|+++ + |.+|||+|||.+++++. |. .++.+++. |.
T Consensus 162 ~-~~d~iv~~vG~Gg~~~Gv~~~lk~~---~---~~~kvi~Vep~~~~~~~-----g~---------~~~~~~~~---~~ 217 (290)
T TIGR01138 162 G-RITHFVSSMGTTGTIMGVSRFLKEQ---N---PPVQIVGLQPEEGSSIP-----GI---------RRWPTEYL---PG 217 (290)
T ss_pred C-CCCEEEECCCchHHHHHHHHHHHHh---C---CCCEEEEEeCCCCCCcc-----CC---------CCCCCCcC---Cc
Confidence 5 5899999999999999999998864 2 66899999999876641 21 12222221 11
Q ss_pred cHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 404 SIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 404 ~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
.++ ....+.++.|+|+|++++++++ +++|+++||++|++++++.++.++ + ++++||+|+||+|.||.+.
T Consensus 218 ~~~------~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~--~-~~~~vv~v~~d~g~ky~~~ 287 (290)
T TIGR01138 218 IFD------ASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLARE--L-PDAVVVAIICDRGDRYLST 287 (290)
T ss_pred ccC------hhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--C-CCCeEEEEECCCCccccCc
Confidence 111 1224578999999999999986 789999999999999999998765 3 5689999999999999875
No 59
>PLN00011 cysteine synthase
Probab=100.00 E-value=4.3e-46 Score=384.77 Aligned_cols=288 Identities=18% Similarity=0.187 Sum_probs=234.3
Q ss_pred ccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHh
Q 009781 166 AFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCAS 245 (526)
Q Consensus 166 l~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~ 245 (526)
...|+|||++++++... .| .+||+|+|++|||||||||++.+++..+.+.++...+..+|+++|+||+|.|+|++|+.
T Consensus 13 ~~~g~TPl~~l~~l~~~-~g-~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~ 90 (323)
T PLN00011 13 ELIGNTPMVYLNNIVDG-CV-ARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAA 90 (323)
T ss_pred HHhCCCceEEccccCCC-CC-ceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH
Confidence 35799999999987654 34 48999999999999999999999999887654333334689999999999999999999
Q ss_pred cCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHH--HHHHHHHHHHhcC-CeeeccCC-chhH-HhHHHHHHHHHHH
Q 009781 246 AGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFD--GCMQLIREVTSEL-PIYLANSL-NSLR-LEGQKTAAIEILQ 320 (526)
Q Consensus 246 ~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~d--d~~~~~~~~~~~~-~~~~~ns~-Np~~-i~G~~T~a~EI~e 320 (526)
+|++|+||||++ +++.|+.+|+.+||+|+.++++++ ++.+.++++.++. ++|+.+++ |+.. ..|++|+++||++
T Consensus 91 ~G~~~~ivvp~~-~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~ 169 (323)
T PLN00011 91 RGYKVILVMPST-MSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169 (323)
T ss_pred cCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHH
Confidence 999999999997 788999999999999999997643 4566677777664 57777775 4442 3479999999999
Q ss_pred HcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccC
Q 009781 321 QFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIG 400 (526)
Q Consensus 321 Ql~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~ 400 (526)
|+++ .||+||+|+|+||+++|++++|+++. +.+|||+||+++++++. .|+ + ..++++++.++
T Consensus 170 q~~~-~~D~iv~~vGtGGt~aGi~~~lk~~~------~~~kvigVe~~~~~~~~----~~~----~---~~~~~~gl~~~ 231 (323)
T PLN00011 170 DSAG-KVDILVAGVGTGGTATGVGKFLKEKN------KDIKVCVVEPVESAVLS----GGQ----P---GPHLIQGIGSG 231 (323)
T ss_pred hcCC-CCCEEEEeCCchHHHHHHHHHHHhhC------CCCEEEEEecCCCcccC----CCC----C---CCCCCCCCCCC
Confidence 9975 69999999999999999999998652 66899999999987763 232 1 23566677665
Q ss_pred C-CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCc
Q 009781 401 D-PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKF 478 (526)
Q Consensus 401 ~-P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~ 478 (526)
. |..+. ....+.++.|+|+|++++++++ +++|+++||++|++++++.++.++.. .++++||+|+|++|.||
T Consensus 232 ~~~~~~~------~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~-~~~~~vv~i~~d~G~ky 304 (323)
T PLN00011 232 IIPFNLD------LTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPE-NAGKLIVVIFPSGGERY 304 (323)
T ss_pred CCCcccC------hhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhcc-CCCCeEEEEECCCcccc
Confidence 3 32221 1224568899999999999986 78999999999999999999887643 35779999999999999
Q ss_pred hHH
Q 009781 479 TQS 481 (526)
Q Consensus 479 ~~~ 481 (526)
.+.
T Consensus 305 ~~~ 307 (323)
T PLN00011 305 LST 307 (323)
T ss_pred CCh
Confidence 886
No 60
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.7e-45 Score=363.14 Aligned_cols=241 Identities=29% Similarity=0.366 Sum_probs=217.4
Q ss_pred CCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCCCE
Q 009781 171 SNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPS 250 (526)
Q Consensus 171 TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~ 250 (526)
|||++++++.+. .+ .+||+|+|++|||||||||++.+++..+.+.++. +...|+++||||+|.|+|++|++.|++|
T Consensus 1 TPl~~~~~l~~~-~~-~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~--~~~~vv~~ssGN~g~alA~~a~~~g~~~ 76 (244)
T cd00640 1 TPLVRLKRLSKL-GG-ANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTGGNTGIALAAAAARLGLKC 76 (244)
T ss_pred CCeeEccccccc-cC-CEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC--CCCEEEEeCCcHHHHHHHHHHHHcCCCE
Confidence 899999988764 44 4899999999999999999999999988654322 1368999999999999999999999999
Q ss_pred EEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhc-CCeeeccC-CchhHHhHHHHHHHHHHHHcCCCCCc
Q 009781 251 IVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSE-LPIYLANS-LNSLRLEGQKTAAIEILQQFDWEVPD 328 (526)
Q Consensus 251 ~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~-~~~~~~ns-~Np~~i~G~~T~a~EI~eQl~~~~pd 328 (526)
+||+|.+ .++.|+.+|+.+||+|+.++++++++.+.+++++++ .+++++|+ .||.+++||+|+++||++|+++..||
T Consensus 77 ~v~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 77 TIVMPEG-ASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999997 689999999999999999999999999999999988 78999998 58999999999999999999965699
Q ss_pred EEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHHHH
Q 009781 329 WVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRA 408 (526)
Q Consensus 329 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~ 408 (526)
+||+|+|+||+++|++++|+++. +.+|||+||+
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~------~~~~ii~v~~----------------------------------------- 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELL------PNVKVIGVEP----------------------------------------- 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhC------CCCEEEEEee-----------------------------------------
Confidence 99999999999999999998642 6789999986
Q ss_pred HHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCC
Q 009781 409 VYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAH 474 (526)
Q Consensus 409 l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~ 474 (526)
.++.|+|+|++++++++ +++|+++||++|++++++.++.+++ .++++||+++||+
T Consensus 189 ---------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~--~~~~~vv~v~tg~ 244 (244)
T cd00640 189 ---------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL--GKGKTVVVILTGG 244 (244)
T ss_pred ---------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc--CCCCEEEEEeCCC
Confidence 67899999999999986 7789999999999999999998775 5688999999995
No 61
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=3.1e-45 Score=374.05 Aligned_cols=292 Identities=27% Similarity=0.337 Sum_probs=236.8
Q ss_pred hcccccCCCceecc-cccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHH
Q 009781 164 VSAFEGNSNLFWAE-RFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAY 242 (526)
Q Consensus 164 vsl~eG~TPL~~~~-~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 242 (526)
+++++|+|||++++ .+... .+..+||+|+|++|||||||||++.+++..+.+. + ..+|+++|+||+|.|+|++
T Consensus 1 i~~~~~~TPl~~~~~~~~~~-~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~---~--~~~vv~assGN~g~a~A~~ 74 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSE-LGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEK---G--GRTVVGASSGNHGRALAYA 74 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHH-CTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHT---T--TSEEEEESSSHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchh-ccCCeEEEEECCCCCcCCcccccchhhhhhcccc---c--cceeeeeccCCceehhhhh
Confidence 46789999999975 33222 3445999999999999999999999999986532 3 4678999999999999999
Q ss_pred HHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcC-------CeeeccC-CchhHHhHHHHH
Q 009781 243 CASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSEL-------PIYLANS-LNSLRLEGQKTA 314 (526)
Q Consensus 243 aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~-------~~~~~ns-~Np~~i~G~~T~ 314 (526)
|+..|++|+||+|++ +++.|+.+++.+||+|+.+.++++++.+.+.+++++. ... .++ .||..++|+.++
T Consensus 75 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 152 (306)
T PF00291_consen 75 AARLGLKCTIVVPED-VSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE-LNQYNNPNVIAGYATI 152 (306)
T ss_dssp HHHHTCEEEEEEETT-SHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE-ESTTTSHHHHHHHHHH
T ss_pred hhhccccceeeeccc-cccccccceeeecceEEEccccccccccccccccccccccccccccc-cCcccchhhhhhhhhc
Confidence 999999999999998 8889999999999999999887555444444443321 111 333 578999999999
Q ss_pred HHHHHHHcCCCCCcE--EEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccc
Q 009781 315 AIEILQQFDWEVPDW--VIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTT 392 (526)
Q Consensus 315 a~EI~eQl~~~~pd~--VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~T 392 (526)
++||++|++ .||+ ||+|+|+||+++|++++|+++ .. |.+|+|+|++.+++++.++++.|.... .+...+
T Consensus 153 ~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~~~---~~--~~~~vigv~~~~~~~~~~~~~~g~~~~--~~~~~~ 223 (306)
T PF00291_consen 153 GLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLKEL---IL--PPVRVIGVEPEGSDPLYRSFKAGKPIR--LPGEST 223 (306)
T ss_dssp HHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHHHH---CH--TTSEEEEEEETTGHHHHHHHHHTSCEH--SSCHHS
T ss_pred chhcccccc--cccceEEEecCCchhHHHHHHhhhhhh---hc--ccccceeeeccCCcccccccccccccc--ccceee
Confidence 999999998 5666 999999999999999999875 11 567999999999999999999996322 122245
Q ss_pred cccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCC--CCCCeEEE
Q 009781 393 FASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVI--GKTDKTVV 469 (526)
Q Consensus 393 ia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i--~~~~~vVv 469 (526)
++ +|..+.|......++.+++..+.++.|+|+|++++++++ +++|+++||++|+++++++++.+++.+ .++++||+
T Consensus 224 ~~-gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~ 302 (306)
T PF00291_consen 224 IA-GLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVV 302 (306)
T ss_dssp ST-GGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEE
T ss_pred ee-cccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEE
Confidence 55 888777555666788889988899999999999999986 779999999999999999999888766 57899999
Q ss_pred EECC
Q 009781 470 VSTA 473 (526)
Q Consensus 470 v~TG 473 (526)
|+||
T Consensus 303 v~tG 306 (306)
T PF00291_consen 303 VLTG 306 (306)
T ss_dssp EE-B
T ss_pred EcCC
Confidence 9997
No 62
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-44 Score=380.10 Aligned_cols=299 Identities=19% Similarity=0.185 Sum_probs=231.9
Q ss_pred ccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEE-eccchHHHHHHHHHH
Q 009781 166 AFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGC-ASTGDTSAALSAYCA 244 (526)
Q Consensus 166 l~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~-aSSGN~g~AlAa~aa 244 (526)
+...+|||++++++... +|..+||+|+|++|||||||||++..++..+.+ .|. ..+++ +||||+|+|+|++|+
T Consensus 30 ~~~~~TPL~~l~~l~~~-~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~---~g~--~~vv~~~ssGN~g~alA~~a~ 103 (365)
T cd06446 30 YVGRPTPLYRAKRLSEY-LGGAKIYLKREDLNHTGAHKINNALGQALLAKR---MGK--KRVIAETGAGQHGVATATACA 103 (365)
T ss_pred cCCCCCCceehHHHHHh-hCCceEEEEeccCCCccchhHHHHHHHHHHHHH---cCC--CeEEEecCchHHHHHHHHHHH
Confidence 45569999999998876 655689999999999999999999888876643 343 34454 799999999999999
Q ss_pred hcCCCEEEEcCCCcCC--HHhHHhHHhCCCEEEEECC---CHHHHHHHH-HHHHhc--CCeeeccC------CchhHHhH
Q 009781 245 SAGVPSIVFLPANKIS--IAQLVQPIANGAFVLSLDT---DFDGCMQLI-REVTSE--LPIYLANS------LNSLRLEG 310 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~-~~~~~~--~~~~~~ns------~Np~~i~G 310 (526)
++|++|+||+|+.... +.++.+|+.+||+|+.+++ +++++...+ +...++ ..+|..++ +....++|
T Consensus 104 ~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag 183 (365)
T cd06446 104 LFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDF 183 (365)
T ss_pred HhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHh
Confidence 9999999999985221 2467789999999999985 356765433 333443 23554433 22345899
Q ss_pred HHHHHHHHHHHcCC---CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHH----HHHHhCCcc
Q 009781 311 QKTAAIEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLY----LYYKSGWKD 383 (526)
Q Consensus 311 ~~T~a~EI~eQl~~---~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~----~a~~~G~~~ 383 (526)
++|+++||++|+++ ..||+||+|+|+||+++|+++||++ . +.+|||+||+++++++. .++.+|...
T Consensus 184 ~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~---~----~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 184 QSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN---D----KDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh---C----CCceEEEEcCCCCccccccceeeccCCCcc
Confidence 99999999999975 3699999999999999999999874 1 46799999999988775 234444321
Q ss_pred c---------c----ccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHH
Q 009781 384 F---------K----PVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVAL 449 (526)
Q Consensus 384 ~---------~----~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~al 449 (526)
. . ......|+++++.+..+ .+..+...+...+.++.|+|+|++++++++ +++|+++||+||+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~--~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaal 334 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGV--GPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAI 334 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCC--CHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHH
Confidence 0 0 12244688888876433 233444456667889999999999999986 779999999999999
Q ss_pred HHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 450 SALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 450 Aal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
||++++.+++ .++++||+|+||+|.||+++
T Consensus 335 Aa~~~~~~~~--~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 335 AYAIKLAKKL--GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHHHHHhc--CCCCeEEEEeCCCCcccccc
Confidence 9999988775 56789999999999999875
No 63
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.8e-44 Score=388.95 Aligned_cols=293 Identities=18% Similarity=0.192 Sum_probs=232.9
Q ss_pred ccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcC
Q 009781 168 EGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAG 247 (526)
Q Consensus 168 eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 247 (526)
.|+|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+.+.... ..+|+++||||+|.|+|++|+++|
T Consensus 9 ~~~TPl~~~~~l~~~-~~~-~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~-g~~vv~~ssGN~g~alA~~a~~~G 85 (454)
T TIGR01137 9 IGNTPLVRLNKVSKG-IKC-ELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKP-GDTIIEPTSGNTGIGLALVAAIKG 85 (454)
T ss_pred cCCCceEEccccCCC-CCc-eEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCC-CCEEEEeCCcHHHHHHHHHHHHcC
Confidence 489999999998875 554 89999999999999999999999998865433222 267999999999999999999999
Q ss_pred CCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC--HHHH---HHHHHHHHhc-CCeeeccCC-chhH-HhHHHHHHHHHH
Q 009781 248 VPSIVFLPANKISIAQLVQPIANGAFVLSLDTD--FDGC---MQLIREVTSE-LPIYLANSL-NSLR-LEGQKTAAIEIL 319 (526)
Q Consensus 248 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~---~~~~~~~~~~-~~~~~~ns~-Np~~-i~G~~T~a~EI~ 319 (526)
++|+||+|++ +++.|+.+++.+||+|+.++++ +++. .+.++++.++ .+.++.+++ |+.. +.||+|+|+||+
T Consensus 86 ~~~~iv~p~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~ 164 (454)
T TIGR01137 86 YKCIIVLPEK-MSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEIL 164 (454)
T ss_pred CeEEEEeCCC-cCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHH
Confidence 9999999997 7899999999999999999875 4432 4456666665 355666765 5664 368999999999
Q ss_pred HHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCcccccccccc
Q 009781 320 QQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQI 399 (526)
Q Consensus 320 eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i 399 (526)
+|+++ .||+||+|+|+||+++|++++|++. .|.+|||+||++++. +. .+.. ........+.+++++.
T Consensus 165 ~q~~~-~~d~vv~~vG~Gg~~~G~~~~~~~~------~~~~~vi~ve~~~~~-~~----~~~~-~~~~~~~~~~~~g~~~ 231 (454)
T TIGR01137 165 EQCEG-KLDMFVAGAGTGGTITGIARYLKES------NPKCRIVGADPEGSI-LA----QPEN-LNKTGRTPYKVEGIGY 231 (454)
T ss_pred HHhCC-CCCEEEEecCchHHHHHHHHHHHhh------CCCCEEEEEecCCCc-cc----CCCc-ccCCCCCCccCCCCCC
Confidence 99986 5999999999999999999999863 266899999999853 22 2211 1101111355666654
Q ss_pred C-CCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCC
Q 009781 400 G-DPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLK 477 (526)
Q Consensus 400 ~-~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K 477 (526)
+ .|..+. ++..+.++.|+|+|++++++++ +++|+++||+||++++|++++.++ .+.++++||+++|++|.|
T Consensus 232 ~~~~~~~~------~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~-~~~~~~~vv~~~~d~g~~ 304 (454)
T TIGR01137 232 DFIPTVLD------RKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAED-ELTEDQVIVVLLPDSIRN 304 (454)
T ss_pred CCCCCcCC------chhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHh-hcCCCCEEEEEECCCCcc
Confidence 3 222211 3456788999999999999986 779999999999999999998775 466788999999999999
Q ss_pred chHHHHh
Q 009781 478 FTQSKID 484 (526)
Q Consensus 478 ~~~~~~~ 484 (526)
|.+..++
T Consensus 305 y~~~~~~ 311 (454)
T TIGR01137 305 YMTKFLN 311 (454)
T ss_pred ccCcccC
Confidence 9987544
No 64
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=365.13 Aligned_cols=293 Identities=19% Similarity=0.244 Sum_probs=258.1
Q ss_pred cCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCC
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGV 248 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 248 (526)
-.|||.+.-.+++. .|+ ++|+|.|+++||||||.||+.+++..+.+.. + ..+|+++|.||||.|+|+.|+++|+
T Consensus 65 ~~TPl~~s~~lS~~-~g~-~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~---~-~~gViasSaGNha~a~Ayaa~~Lgi 138 (457)
T KOG1250|consen 65 VETPLLKSVALSKK-AGM-PVYLKREDLQPSGSFKIRGAGNALQKLAKQQ---K-KAGVIASSAGNHAQAAAYAARKLGI 138 (457)
T ss_pred ecccchhhhhhhhh-cCC-ceEEEehhcccccceehhhHHHHHHHHHHhh---h-cCceEEecCccHHHHHHHHHHhcCC
Confidence 45899888777776 777 8999999999999999999999998875432 2 3679999999999999999999999
Q ss_pred CEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCC-chhHHhHHHHHHHHHHHHcCCCCC
Q 009781 249 PSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEVP 327 (526)
Q Consensus 249 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~p 327 (526)
+++|+||.. ++..|.+.++.+||+|+..+.++|++...+++++++.++.++|++ +|..++||.|++.||.+|+.. .+
T Consensus 139 paTIVmP~~-tp~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl~ql~~-~~ 216 (457)
T KOG1250|consen 139 PATIVMPVA-TPLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKENGLTYIPPFDHPDIWAGQGTIGLEILEQLKE-PD 216 (457)
T ss_pred ceEEEecCC-ChHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHhcCceecCCCCCchhhcCcchHHHHHHHhhcC-CC
Confidence 999999997 688888889999999999999999999999999999999999997 599999999999999999983 35
Q ss_pred cEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHHH
Q 009781 328 DWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDR 407 (526)
Q Consensus 328 d~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~ 407 (526)
++|+||+|+||+++|+..|++ +.| |..+||||++++|+.+..+++.|+ ....+...|+|+|+++. .-.++
T Consensus 217 ~AI~vpVGGGGLiaGIat~vk---~~~---p~vkIIGVEt~~a~~f~~sl~~g~--~V~lp~i~s~AdglaV~--~Vg~~ 286 (457)
T KOG1250|consen 217 GAIVVPVGGGGLIAGIATGVK---RVG---PHVKIIGVETEGAHSFNASLKAGK--PVTLPKITSLADGLAVK--TVGEN 286 (457)
T ss_pred CeEEEecCCchhHHHHHHHHH---HhC---CCCceEEEeecCcHHHHHHHhcCC--eeecccccchhcccccc--hhhHH
Confidence 599999999999999999766 446 456899999999999999999996 45667788999999864 45678
Q ss_pred HHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 408 AVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 408 ~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
.+...+...+.++.|+|+||..|++++ ..+..++||++|+++||.... +.- -.++.++|.+++|++..+...
T Consensus 287 tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~-~lk~~~vv~ilsG~n~~~~~L 359 (457)
T KOG1250|consen 287 TFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLN-HLKGKKVVSILSGGNIDFDSL 359 (457)
T ss_pred HHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-ccc-ccCCceEEeecccCCCCcccc
Confidence 899999999999999999999999985 899999999999999998876 221 136788999999999887654
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.4e-43 Score=373.77 Aligned_cols=306 Identities=17% Similarity=0.167 Sum_probs=234.6
Q ss_pred hhcccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHH
Q 009781 163 IVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAY 242 (526)
Q Consensus 163 ~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 242 (526)
+..+...+|||++++++++. +|..+||+|+|++|||||||||++..++..+. +.|. ...|+++||||+|.|+|++
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~-~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~---~~g~-~~vi~e~ssGN~G~alA~~ 117 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEA-LGGAKIYLKREDLNHTGAHKINNALGQALLAK---RMGK-KRIIAETGAGQHGVATATA 117 (385)
T ss_pred HHHhCCCCCCceehHHHHHH-hCCCeEEEEeCCCCCCccchHHHHHHHHHHHH---HcCC-CEEEEEcCcHHHHHHHHHH
Confidence 34566779999999998876 66568999999999999999999988877654 3343 2455579999999999999
Q ss_pred HHhcCCCEEEEcCCCcCCH--HhHHhHHhCCCEEEEECC---CHHHH-HHHHHHHHhcC--CeeeccCC---chh---HH
Q 009781 243 CASAGVPSIVFLPANKISI--AQLVQPIANGAFVLSLDT---DFDGC-MQLIREVTSEL--PIYLANSL---NSL---RL 308 (526)
Q Consensus 243 aa~~Gi~~~V~vP~~~~s~--~k~~q~~~~GA~Vi~v~g---~~dd~-~~~~~~~~~~~--~~~~~ns~---Np~---~i 308 (526)
|+++|++|+||||+...+. .++.+|+.+||+|+.+++ .++++ .+.+++++++. .+|..+++ +|+ ..
T Consensus 118 a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~ 197 (385)
T TIGR00263 118 AALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVR 197 (385)
T ss_pred HHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHH
Confidence 9999999999999852333 456789999999999974 37776 35555555542 34544433 333 35
Q ss_pred hHHHHHHHHHHHHcCC---CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCC----chHHHHHHhCC
Q 009781 309 EGQKTAAIEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANA----NPLYLYYKSGW 381 (526)
Q Consensus 309 ~G~~T~a~EI~eQl~~---~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~----~~l~~a~~~G~ 381 (526)
+||+|+++||++|+.+ ..||+||+|+|+||+++|++++|.+ +|.+|||+||++++ ......+..|.
T Consensus 198 ~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-------~~~~~iigVe~~gs~~~~~~~~~~~~~g~ 270 (385)
T TIGR00263 198 DFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-------DPSVQLIGVEAGGLGIDTDKHAATLAKGS 270 (385)
T ss_pred HHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-------CCCCeEEEEEeCCCcccchhhhhhhhcCC
Confidence 8999999999999853 3689999999999999999998853 27789999999985 23455566663
Q ss_pred ccc---------c----ccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHH
Q 009781 382 KDF---------K----PVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGV 447 (526)
Q Consensus 382 ~~~---------~----~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~ 447 (526)
... . ......|+++++++... .+..+...+...+.++.|+|+|+++++++| +++|++++|++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~--~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaa 348 (385)
T TIGR00263 271 PGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGV--GPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSH 348 (385)
T ss_pred eeEecCcccccccCCCCcccccceeeccccCCCC--CHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHH
Confidence 210 0 02234678888865433 244444445555678999999999999986 7799999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHh
Q 009781 448 ALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKID 484 (526)
Q Consensus 448 alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~ 484 (526)
++|+++++.++ +.++++||+++||+|.|+.+.+.+
T Consensus 349 alaa~~~~~~~--l~~~~~Vv~i~~g~G~~d~~~~~~ 383 (385)
T TIGR00263 349 ALAHLEKIAPT--LPKDQIVVVNLSGRGDKDIFTIAK 383 (385)
T ss_pred HHHHHHHHHHh--CCCCCeEEEEeCCCCcCCHHHHHh
Confidence 99999998765 557889999999999999987643
No 66
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=7.5e-43 Score=370.99 Aligned_cols=325 Identities=19% Similarity=0.153 Sum_probs=239.1
Q ss_pred CCccccccccCCCCCccchh-cccc-cCCCceecccccccccCC-CcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcC
Q 009781 145 SGVWSKKEWVLPEIDSDDIV-SAFE-GNSNLFWAERFGKEFLQM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMN 221 (526)
Q Consensus 145 ~~iwr~~~~~lP~~~~~~~v-sl~e-G~TPL~~~~~l~~~~lg~-~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g 221 (526)
-+.|||-+ .| +++. -+.. ++|||++++++.+. +|. .+||+|+|++|||||||||++..++.++. +.|
T Consensus 56 ~~~~~~~~--i~----~~v~~~~~~~~~TPL~~~~~L~~~-lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~---~~G 125 (427)
T PRK12391 56 VSTERYID--IP----EEVREIYRLWRPTPLIRARRLEKA-LGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNK---KEG 125 (427)
T ss_pred CCcccccC--Ch----HHHHHHHcccCCCCeeEchhhHhh-hCCCceEEEEEcCCCCCCChHHHHHHHHHHHHH---HCC
Confidence 34688755 33 2222 1334 59999999999876 665 48999999999999999999987776654 344
Q ss_pred CCceEEEE-eccchHHHHHHHHHHhcCCCEEEEcCCC--cCCHHhHHhHHhCCCEEEEECCCHHHH--------------
Q 009781 222 KPVIGVGC-ASTGDTSAALSAYCASAGVPSIVFLPAN--KISIAQLVQPIANGAFVLSLDTDFDGC-------------- 284 (526)
Q Consensus 222 ~~~~~Vv~-aSSGN~g~AlAa~aa~~Gi~~~V~vP~~--~~s~~k~~q~~~~GA~Vi~v~g~~dd~-------------- 284 (526)
...+++ .|+||+|.|+|++|+.+|++|+||||+. ..++.++.+|+.|||+|+.++++++++
T Consensus 126 --~~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gs 203 (427)
T PRK12391 126 --IKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGS 203 (427)
T ss_pred --CCEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCcccccc
Confidence 345555 5789999999999999999999999973 135677889999999999999887663
Q ss_pred ----HHHHHHHHhc-CC-eeeccCCchhHHhHHHHHHHHHHHHcCC--CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCC
Q 009781 285 ----MQLIREVTSE-LP-IYLANSLNSLRLEGQKTAAIEILQQFDW--EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLV 356 (526)
Q Consensus 285 ----~~~~~~~~~~-~~-~~~~ns~Np~~i~G~~T~a~EI~eQl~~--~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~ 356 (526)
...+.+.+.+ .+ +|..++.+...++||.++|+||++|+.+ ..||+||+|+|+||+++|++++|.+.+..|.
T Consensus 204 l~~ai~~A~e~a~~~~~~~y~~~s~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~- 282 (427)
T PRK12391 204 LGIAISEAVEDAAKRPDTKYALGSVLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGK- 282 (427)
T ss_pred HHHHHHHHHHHHHhCCCcEEEcCCCCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCC-
Confidence 2333344433 23 5665654445788999999999999973 3699999999999999999999987766664
Q ss_pred CCCCeEEEEecCCCchHHHHHH---hCCc-cccccC----------CccccccccccCCCccHHHHHHHHHh-CCCeEEE
Q 009781 357 DRIPRLVCAQAANANPLYLYYK---SGWK-DFKPVR----------ANTTFASAIQIGDPVSIDRAVYALKN-CDGIVEE 421 (526)
Q Consensus 357 ~~~prvi~Vq~~~~~~l~~a~~---~G~~-~~~~~~----------~~~Tia~~i~i~~P~~~~~~l~~l~~-~~g~~v~ 421 (526)
+.+|||+||+++|+++++.+. .|.. ...|.. ...+.+.++...... ..+..+.+ ....++.
T Consensus 283 -~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~---~~~~~l~~~~~~~~~~ 358 (427)
T PRK12391 283 -KDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMA---PLVSLLVHEGLIEARA 358 (427)
T ss_pred -CCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCch---HHHHHHHhcCceEEEE
Confidence 668999999999999986532 1210 011111 122344444432211 23333333 3347799
Q ss_pred eCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCC-CCCCeEEEEECCCCCCchHHHHhhh
Q 009781 422 ATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVI-GKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 422 Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i-~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
|+|+|+++|++++ +++|++++|+||+++|++.++.+++.. .++.+||+++||||.++.....++.
T Consensus 359 V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~~l 425 (427)
T PRK12391 359 YPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAYDAYL 425 (427)
T ss_pred ECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHHHHHh
Confidence 9999999999986 779999999999999999998766532 3477899999999999887765443
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3.8e-43 Score=370.12 Aligned_cols=301 Identities=20% Similarity=0.246 Sum_probs=234.2
Q ss_pred cCCCceecccccccccC-----CCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHH
Q 009781 169 GNSNLFWAERFGKEFLQ-----MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYC 243 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg-----~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 243 (526)
.+|||++++++++. +| ..+||+|+|++|||||||||++...+..+. +.|++ ..|++.|+||||.|+|++|
T Consensus 65 r~TPL~~~~~Ls~~-~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~---~~g~~-~vIaesgaGNhG~AlA~aa 139 (410)
T PLN02618 65 RETPLYFAERLTEH-YKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAK---RLGKK-RIIAETGAGQHGVATATVC 139 (410)
T ss_pred CCCceeEhhhHHHH-hccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHH---HcCCC-EEEEEcCcHHHHHHHHHHH
Confidence 48999999999886 64 248999999999999999999887766654 34432 4455566999999999999
Q ss_pred HhcCCCEEEEcCCCcCC--HHhHHhHHhCCCEEEEE---CCCHHHHH-HHHHHHHhc--CCeeeccCC---ch---hHHh
Q 009781 244 ASAGVPSIVFLPANKIS--IAQLVQPIANGAFVLSL---DTDFDGCM-QLIREVTSE--LPIYLANSL---NS---LRLE 309 (526)
Q Consensus 244 a~~Gi~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v---~g~~dd~~-~~~~~~~~~--~~~~~~ns~---Np---~~i~ 309 (526)
+++|++|+||||+..+. ..++.+|+.+||+|+.| +++++++. +.+++++++ ..+|..++. +| ...+
T Consensus 140 a~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~ 219 (410)
T PLN02618 140 ARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD 219 (410)
T ss_pred HHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHH
Confidence 99999999999985222 34566899999999999 67888886 555666664 345665442 33 3469
Q ss_pred HHHHHHHHHHHHc--CC-CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCC----chHHHHHHhCCc
Q 009781 310 GQKTAAIEILQQF--DW-EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANA----NPLYLYYKSGWK 382 (526)
Q Consensus 310 G~~T~a~EI~eQl--~~-~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~----~~l~~a~~~G~~ 382 (526)
+|+|+++||.+|+ .+ ..||+||+|+|+||+++|++++|++ ++.+|||+||++++ ......+..|..
T Consensus 220 ~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-------~~~v~ligVEa~G~~~~~~~~~a~l~~g~~ 292 (410)
T PLN02618 220 FHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-------DEDVRLIGVEAAGFGLDSGKHAATLTKGEV 292 (410)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-------CCCceEEEEEeCCCcccccccccchhcCCc
Confidence 9999999998886 11 3699999999999999999999863 36789999999996 223344455532
Q ss_pred cc-------------cccCCccccccccccCCCccHHHHHHHHHhC-CCeEEEeCHHHHHHHHHHH-HhcCCeecchHHH
Q 009781 383 DF-------------KPVRANTTFASAIQIGDPVSIDRAVYALKNC-DGIVEEATEEELMDVSAQA-DSTGMFVCPHTGV 447 (526)
Q Consensus 383 ~~-------------~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~-~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~ 447 (526)
.. .+.....|++++++++... .. +..++++ .+.++.|+|+|+++|+++| +++|++++++||+
T Consensus 293 gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvg--p~-~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~ 369 (410)
T PLN02618 293 GVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVG--PE-HSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSH 369 (410)
T ss_pred ceeccccccccccccCCCCCCcchhhhhcCCCCc--HH-HHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 11 1123457899999865433 33 3555653 4588999999999999987 7799999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 448 ALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 448 alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
++|+++++.++ +.+++.||+++||+|.||++.+.++.
T Consensus 370 a~a~a~~~a~~--l~~~~~iVv~lsgrG~Kd~~~v~~~~ 406 (410)
T PLN02618 370 ALAYLEKLCPT--LPDGTKVVVNCSGRGDKDVNTAIKYL 406 (410)
T ss_pred HHHHHHHHhHh--cCCCCEEEEEeCCCCcCCHHHHHHHh
Confidence 99999998875 56788999999999999999986654
No 68
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.1e-42 Score=364.33 Aligned_cols=302 Identities=19% Similarity=0.178 Sum_probs=232.5
Q ss_pred cccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHH
Q 009781 165 SAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 165 sl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
.+.-..|||++++++++. +|..+||+|+|++|||||||||.+...+..++ +.|++ ..|+++|+||||.|+|++|+
T Consensus 57 ~~~g~pTPL~~~~~Ls~~-~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~---~~G~~-~vI~etgsGnhG~A~A~aaa 131 (402)
T PRK13028 57 HYVGRPTPLYHAKRLSEE-LGGAQIYLKREDLNHTGAHKINNCLGQALLAK---RMGKK-RLIAETGAGQHGVATATAAA 131 (402)
T ss_pred HhCCCCCCeeehHHhHhh-cCCCeEEEEECCCCCCcchHHHHHHHHHHHHH---HcCCC-eEEEecCcHHHHHHHHHHHH
Confidence 445568999999999887 75568999999999999999999887776654 34532 45667899999999999999
Q ss_pred hcCCCEEEEcCCCcCCH--HhHHhHHhCCCEEEEECC---CHHHHHHHHHH-HHhc--CCeeeccCC---chh--H-HhH
Q 009781 245 SAGVPSIVFLPANKISI--AQLVQPIANGAFVLSLDT---DFDGCMQLIRE-VTSE--LPIYLANSL---NSL--R-LEG 310 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~--~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~-~~~~--~~~~~~ns~---Np~--~-i~G 310 (526)
++|++|+||||+..++. .++.+|+.+||+|+.|+. +++++.+.+.+ +.++ ..+|..++. +|+ . .+|
T Consensus 132 ~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~ 211 (402)
T PRK13028 132 LFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDF 211 (402)
T ss_pred HcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHH
Confidence 99999999999863332 346689999999999984 78888776643 4544 235554442 343 3 469
Q ss_pred HHHHHHHHHHHcCC---CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC--------CchHHHHHHh
Q 009781 311 QKTAAIEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAAN--------ANPLYLYYKS 379 (526)
Q Consensus 311 ~~T~a~EI~eQl~~---~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~--------~~~l~~a~~~ 379 (526)
|+|+++||.+|+.+ ..||+||+|+|+||+++|++++|++ ++.+|||+||+.+ ++++. .
T Consensus 212 q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-------~~~v~iigVE~~G~~~~~~~~aa~l~----~ 280 (402)
T PRK13028 212 QSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-------DESVRLVGVEPAGRGLDLGEHAATLT----L 280 (402)
T ss_pred hHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-------CCCceEEEEecCCCCccccccccccc----C
Confidence 99999999999742 3699999999999999999999964 2667999999988 55554 3
Q ss_pred CCccc---------c----ccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchH
Q 009781 380 GWKDF---------K----PVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHT 445 (526)
Q Consensus 380 G~~~~---------~----~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~s 445 (526)
|.... + .....+|++.+++++.+ .+...++.....+.++.|+|+|+++|+++| +++|++++|+|
T Consensus 281 g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~v--gp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~s 358 (402)
T PRK13028 281 GKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGV--GPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALES 358 (402)
T ss_pred CCcceecccceeeccccCCCcCCccceeccccCCCC--CHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHH
Confidence 42110 0 01224688888875443 344444333333578999999999999987 67999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 446 GVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 446 A~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
|+++|+++++.++ +.++++||+++||+|.|+.+.+.++.
T Consensus 359 a~alA~a~~~a~~--l~~~~~VVv~lsG~G~kd~~~~~~~~ 397 (402)
T PRK13028 359 SHAVAYAIKLAPE--LSKDETILVNLSGRGDKDIDYVAEML 397 (402)
T ss_pred HHHHHHHHHhhhh--cCCCCeEEEEECCCCccCHHHHHHHh
Confidence 9999999998765 46788999999999999999876543
No 69
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.3e-42 Score=363.56 Aligned_cols=305 Identities=18% Similarity=0.195 Sum_probs=232.0
Q ss_pred ccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHh
Q 009781 166 AFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCAS 245 (526)
Q Consensus 166 l~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~ 245 (526)
+.-..|||++++++++. +|..+||+|+|++|||||||||++...+..++ +.|++ ..|+++|+||||.|+|++|++
T Consensus 54 ~~grpTPL~~~~~Ls~~-~gg~~IylK~EdlnptGS~K~r~al~~~l~A~---~~Gk~-~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 54 YVGRPTPLYFAERLSEH-LGGAKIYLKREDLNHTGAHKINNVLGQALLAK---RMGKK-RIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred hcCCCCCceEhHHHHHH-cCCCeEEEEECCCCCccchHHHHHHHHHHHHH---HcCCC-eEEEecCcHHHHHHHHHHHHH
Confidence 34457999999999887 76568999999999999999999887777654 34542 456668999999999999999
Q ss_pred cCCCEEEEcCCCcCC--HHhHHhHHhCCCEEEEECC---CHHHHHHH-HHHHHhc--CCeeeccCC---chhH---HhHH
Q 009781 246 AGVPSIVFLPANKIS--IAQLVQPIANGAFVLSLDT---DFDGCMQL-IREVTSE--LPIYLANSL---NSLR---LEGQ 311 (526)
Q Consensus 246 ~Gi~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v~g---~~dd~~~~-~~~~~~~--~~~~~~ns~---Np~~---i~G~ 311 (526)
+|++|+||||+..++ ..++.+|+.+||+|+.|+. +++|+.+. .+++.++ ..+|..++. +|+. .+||
T Consensus 129 ~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q 208 (397)
T PRK04346 129 LGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQ 208 (397)
T ss_pred cCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhc
Confidence 999999999985333 2355679999999999984 56666443 3444443 345555443 4442 5699
Q ss_pred HHHHHHHHHHcCC---CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc----hHHHHHHhCCccc
Q 009781 312 KTAAIEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANAN----PLYLYYKSGWKDF 384 (526)
Q Consensus 312 ~T~a~EI~eQl~~---~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~----~l~~a~~~G~~~~ 384 (526)
+|+++||.+|+.+ ..||+||+|+|+||+++|++++|.+ ++.+|||+||+.++. .....+..|....
T Consensus 209 ~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-------~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~ 281 (397)
T PRK04346 209 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-------DESVRLIGVEAAGKGLETGKHAATLTKGRPGV 281 (397)
T ss_pred chHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-------CCCCeEEEEecCCCccccccccchhhcCCeee
Confidence 9999999999853 4799999999999999999999863 377899999999852 2334454553210
Q ss_pred -------------cccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHH
Q 009781 385 -------------KPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALS 450 (526)
Q Consensus 385 -------------~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alA 450 (526)
.......+++.+++.+.+. +....+.+.....++.|+|+|+++|+++| +++|++++++||.++|
T Consensus 282 ~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvg--p~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA 359 (397)
T PRK04346 282 LHGAKTYLLQDEDGQILETHSISAGLDYPGVG--PEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALA 359 (397)
T ss_pred eccccceecccCCCccCCCceeeccccCCCCC--HHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHH
Confidence 0122346888888754433 33333333333478999999999999997 7799999999999999
Q ss_pred HHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 451 ALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 451 al~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
+++++.+. +.++++||+++||+|.|+.+.+.++.
T Consensus 360 ~a~kla~~--l~~~~~Vvv~lsGrG~kd~~~~~~~~ 393 (397)
T PRK04346 360 YALKLAPT--LGKDQIIVVNLSGRGDKDVFTVAKLL 393 (397)
T ss_pred HHHHhhhh--cCCCCeEEEEeCCCCccCHHHHHHHh
Confidence 99988654 46788999999999999999876543
No 70
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-43 Score=349.56 Aligned_cols=281 Identities=21% Similarity=0.212 Sum_probs=231.0
Q ss_pred cCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCC
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGV 248 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 248 (526)
|+|||+++.++... .+ .++|+|+|++||+||.|||.+.+|+..+++.+++.+ ..+||++||||||.+||+.|+..|+
T Consensus 10 G~TPlvrL~~~~~~-~~-~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~p-G~tIVE~TSGNTGI~LA~vaa~~Gy 86 (300)
T COG0031 10 GNTPLVRLNRLSPG-TG-VEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKP-GGTIVEATSGNTGIALAMVAAAKGY 86 (300)
T ss_pred CCCCcEeecccCCC-CC-ceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCC-CCEEEEcCCChHHHHHHHHHHHcCC
Confidence 99999999988765 33 389999999999999999999999999976555544 3689999999999999999999999
Q ss_pred CEEEEcCCCcCCHHhHHhHHhCCCEEEEECC--C-HHHHHHHHHHHHhcC-C-eeeccCC-chhHH-hHHHHHHHHHHHH
Q 009781 249 PSIVFLPANKISIAQLVQPIANGAFVLSLDT--D-FDGCMQLIREVTSEL-P-IYLANSL-NSLRL-EGQKTAAIEILQQ 321 (526)
Q Consensus 249 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~-~dd~~~~~~~~~~~~-~-~~~~ns~-Np~~i-~G~~T~a~EI~eQ 321 (526)
+++++||++ +|.+++.+|++|||+|+.+++ . +..+.+.+++++++. + +++.|++ ||... .++.|++.||++|
T Consensus 87 ~~iivmP~~-~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~ 165 (300)
T COG0031 87 RLIIVMPET-MSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQ 165 (300)
T ss_pred cEEEEeCCC-CCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHH
Confidence 999999996 899999999999999999985 3 677888888888877 3 5666664 67654 4556999999999
Q ss_pred cCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCC
Q 009781 322 FDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGD 401 (526)
Q Consensus 322 l~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~ 401 (526)
++. .+|+||..+|+||+++|+.+.||+- .|..|+|+|||+++. +... |. .+....||..+.
T Consensus 166 ~~g-~~d~fVagvGTGGTitGvar~Lk~~------~p~i~iv~vdP~~S~-~~~~---G~--------g~~~i~GIG~~~ 226 (300)
T COG0031 166 TDG-KVDAFVAGVGTGGTITGVARYLKER------NPNVRIVAVDPEGSV-LLSG---GE--------GPHKIEGIGAGF 226 (300)
T ss_pred hCC-CCCEEEEeCCcchhHHHHHHHHHhh------CCCcEEEEECCCCCc-ccCC---CC--------CCcccCCCCCCc
Confidence 985 5999999999999999999977652 266799999999944 4321 31 123334554332
Q ss_pred -CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCch
Q 009781 402 -PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFT 479 (526)
Q Consensus 402 -P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~ 479 (526)
|.++ ..+..+.++.|+|+|.++++++| +++|++++++|+++++|++++.++. .++.+||+|++++|.||.
T Consensus 227 ip~~~------~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~--~~g~~IVti~pD~G~RYl 298 (300)
T COG0031 227 VPENL------DLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKEL--PAGKTIVTILPDSGERYL 298 (300)
T ss_pred CCccc------ccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhc--CCCCeEEEEECCCccccc
Confidence 3221 23456889999999999999986 8899999999999999999998774 468899999999999996
Q ss_pred H
Q 009781 480 Q 480 (526)
Q Consensus 480 ~ 480 (526)
+
T Consensus 299 s 299 (300)
T COG0031 299 S 299 (300)
T ss_pred C
Confidence 4
No 71
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=336.31 Aligned_cols=286 Identities=17% Similarity=0.237 Sum_probs=248.1
Q ss_pred CCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCCC
Q 009781 170 NSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVP 249 (526)
Q Consensus 170 ~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~ 249 (526)
.||.+..+.+... +| .+||+|+|.+|.|||||.||+.+.++.+...+ +.++|++.||||||.|+|+.|+..||+
T Consensus 25 kTpVlTS~~ln~~-~g-~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek----~~kgvithSSGNHaqAlalaAk~~giP 98 (323)
T KOG1251|consen 25 KTPVLTSENLNEK-VG-RHVFFKCENFQKTGAFKFRGALNAVSSLKAEK----RAKGVITHSSGNHAQALALAAKILGIP 98 (323)
T ss_pred cCceechhhHHHH-hh-hheEeehhhhhhccceehhhhHHHHHHhhHhh----hcCceEeecCCcHHHHHHHHHHhcCCC
Confidence 4777777777765 55 48999999999999999999999999987432 246799999999999999999999999
Q ss_pred EEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCc-hhHHhHHHHHHHHHHHHcCCCCCc
Q 009781 250 SIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLN-SLRLEGQKTAAIEILQQFDWEVPD 328 (526)
Q Consensus 250 ~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~N-p~~i~G~~T~a~EI~eQl~~~~pd 328 (526)
++|+||++ .+..|...++.|||+|+.++.+.++....++++.++.+++.++++| |..|.||.|+++|++||++ ..|
T Consensus 99 a~IVvP~~-AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg--~iD 175 (323)
T KOG1251|consen 99 ATIVVPKD-APICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVG--EID 175 (323)
T ss_pred eEEEecCC-ChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhC--ccc
Confidence 99999998 6888999999999999999999999999999999999999999987 8899999999999999999 689
Q ss_pred EEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccHHHH
Q 009781 329 WVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRA 408 (526)
Q Consensus 329 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~ 408 (526)
.+|||+|+||+++|.+.+.+- +.|..+|++|||++++.-.++|.+|. +.+.+.++||+||.....-.+ ..
T Consensus 176 alfvpvgGGGllSgvAlaa~~------l~P~i~vy~veP~~a~d~~qsf~~g~--I~~l~tp~TIADG~r~~~lG~--~t 245 (323)
T KOG1251|consen 176 ALFVPVGGGGLLSGVALAAKS------LKPSIEVYAVEPEAADDGQQSFLKGK--IVHLDTPKTIADGVRTSHLGP--LT 245 (323)
T ss_pred eEEEeecCcchhhHHHHHHhc------cCCCcEEEEecCcccchHHHHHhcCC--eEecCCchhhhhhhhhccccc--cc
Confidence 999999999999999854432 34888999999999999999999995 666888899999997653222 23
Q ss_pred HHHHHhCCCeEEEeCHHHHHHHHHH-HHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCC
Q 009781 409 VYALKNCDGIVEEATEEELMDVSAQ-ADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLK 477 (526)
Q Consensus 409 l~~l~~~~g~~v~Vsd~ei~~A~~~-l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K 477 (526)
+-.+|+..+.+++|+|+||.+++++ +.+..+.+||+++.++||++....+- ..+++.+|++|++..
T Consensus 246 ~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~---~~K~igIiLsGGNVD 312 (323)
T KOG1251|consen 246 WPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL---NIKRIGIILSGGNVD 312 (323)
T ss_pred hHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh---ccCceEEEEeCCccc
Confidence 4556777888999999999999998 58999999999999999988766552 367899999997644
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.4e-41 Score=353.21 Aligned_cols=288 Identities=16% Similarity=0.138 Sum_probs=229.8
Q ss_pred hcccccCCCceecccccccccCC-CcEEEEecCCCCC---CchhhhhHHHHHHHHHHHHhcCCCceEEEEe--ccchHHH
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQM-NDLWVKHCGISHT---GSFKDLGMTVLVSQVNRLKRMNKPVIGVGCA--STGDTSA 237 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg~-~~l~lK~E~~nPT---GSFKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~ 237 (526)
+.|.+|+|||++++++... +|+ .+||+|+|++||| ||+|||.+..++..+. +.| ..+|+++ |+||+|.
T Consensus 9 ~~l~~g~TPL~~~~~l~~~-~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~---~~G--~~~vvs~G~s~GN~g~ 82 (337)
T PRK12390 9 YPLTFGPTPIHPLKRLSAH-LGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDAL---AQG--ADTLVSIGGVQSNHTR 82 (337)
T ss_pred cccCCCCCcceeHHHHHHH-hCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHH---HcC--CCEEEEeCCCccHHHH
Confidence 4688999999999988776 675 5899999999998 7779999988888764 334 4677776 8899999
Q ss_pred HHHHHHHhcCCCEEEEcCCCcCC--------HHhHHhHHhCCCEEEEECCCHH----HHHHHHHHHHhc-CC-eeeccC-
Q 009781 238 ALSAYCASAGVPSIVFLPANKIS--------IAQLVQPIANGAFVLSLDTDFD----GCMQLIREVTSE-LP-IYLANS- 302 (526)
Q Consensus 238 AlAa~aa~~Gi~~~V~vP~~~~s--------~~k~~q~~~~GA~Vi~v~g~~d----d~~~~~~~~~~~-~~-~~~~ns- 302 (526)
|+|++|+++|++|+||+|.. ++ ..++.+++.|||+|+.++++++ ++.+.+.+..++ .+ .|..+.
T Consensus 83 alA~aa~~~G~~~~iv~~~~-~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 83 QVAAVAAHLGMKCVLVQENW-VNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHcCCeEEEEeCCC-CCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999997664 22 2356689999999999998764 555555555544 33 443432
Q ss_pred --CchhHHhHHHHHHHHHHHH---cCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHH
Q 009781 303 --LNSLRLEGQKTAAIEILQQ---FDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYY 377 (526)
Q Consensus 303 --~Np~~i~G~~T~a~EI~eQ---l~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~ 377 (526)
.+|+..+|++++++||++| +++ .||+||+|+|+||+++|++++|+++ + |.+|||+||++++.++..+-
T Consensus 162 ~~~~~~~~~G~~~~a~Ei~~q~~~~~~-~~d~vvv~vGtGgtlaGi~~~~k~~---~---~~~rvigV~~~~~~~~~~~~ 234 (337)
T PRK12390 162 ASDHPLGGLGFVGFAEEVRAQEAELGF-KFDYIVVCSVTGSTQAGMVVGFAAD---G---RARRVIGIDASAKPEQTRAQ 234 (337)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcchhHHHHHHHHHhc---C---CCceEEEEEecCchHHHHHH
Confidence 3578899999999999998 544 6999999999999999999999853 3 66899999999988776541
Q ss_pred HhCCccccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecch-HHHHHHHHHHH
Q 009781 378 KSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPH-TGVALSALIKL 455 (526)
Q Consensus 378 ~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~-sA~alAal~~l 455 (526)
+.. ...++++++.++.|..... +...+++.+..+.|+|+|++++++++ +++|+++||+ ||++++|+.++
T Consensus 235 ------~~~--~~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~ 305 (337)
T PRK12390 235 ------VLR--IARNTAELVELGRDITEDD-VVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDL 305 (337)
T ss_pred ------HHH--HHHHHHHHhCCCCCCChhh-EEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence 111 2356677777766544332 22445677888999999999999986 7799999995 99999999999
Q ss_pred HHcCCCCCCCeEEEEECCC
Q 009781 456 RCKGVIGKTDKTVVVSTAH 474 (526)
Q Consensus 456 ~~~g~i~~~~~vVvv~TG~ 474 (526)
.++|.+.++++||+++||+
T Consensus 306 ~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 306 VRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred HhcCCCCCCCeEEEEeCCC
Confidence 9999999999999999997
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2e-40 Score=367.20 Aligned_cols=311 Identities=18% Similarity=0.158 Sum_probs=233.6
Q ss_pred cc-CCCceeccccccc---ccCC-CcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHH
Q 009781 168 EG-NSNLFWAERFGKE---FLQM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAY 242 (526)
Q Consensus 168 eG-~TPL~~~~~l~~~---~lg~-~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 242 (526)
.| +|||+++++++.. .+|. .+||+|+|++|||||||||++..++..+.+ .|+. .+|+++|+||||.|+|++
T Consensus 323 iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~---~G~~-~~IvetssGNhG~AlA~a 398 (695)
T PRK13802 323 VGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKR---MGKT-RVIAETGAGQHGVATATV 398 (695)
T ss_pred CCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHH---cCCC-CEEEEECcHHHHHHHHHH
Confidence 35 9999999987642 1453 489999999999999999999999887754 4542 578899999999999999
Q ss_pred HHhcCCCEEEEcCCCc--CCHHhHHhHHhCCCEEEEECC---CHHHHH-HHHHHHHhc--CCeeeccCC---chh---HH
Q 009781 243 CASAGVPSIVFLPANK--ISIAQLVQPIANGAFVLSLDT---DFDGCM-QLIREVTSE--LPIYLANSL---NSL---RL 308 (526)
Q Consensus 243 aa~~Gi~~~V~vP~~~--~s~~k~~q~~~~GA~Vi~v~g---~~dd~~-~~~~~~~~~--~~~~~~ns~---Np~---~i 308 (526)
|+++|++|+||||+.. .+..++.+|+.|||+|+.|++ +++++. +.++++.++ ..+|+.+++ ||+ ..
T Consensus 399 aA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~ 478 (695)
T PRK13802 399 CAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVR 478 (695)
T ss_pred HHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHH
Confidence 9999999999999852 356788999999999999983 467774 344556654 245665553 343 56
Q ss_pred hHHHHHHHHHHHHcCC----CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHH--HH--Hh-
Q 009781 309 EGQKTAAIEILQQFDW----EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYL--YY--KS- 379 (526)
Q Consensus 309 ~G~~T~a~EI~eQl~~----~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~--a~--~~- 379 (526)
+||+|+|+||++|+.. ..||+||+|+|+||+++|++++|++ ++.+||||||+.++.+... .. ..
T Consensus 479 agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-------~~~vkligVE~~g~g~~~g~h~~~~~~g 551 (695)
T PRK13802 479 DFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-------DERVNLYGYEAGGNGPESGKHAIRFAPG 551 (695)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-------CCCceEEEEEecCCCccccchhhhhhhc
Confidence 9999999999999953 2699999999999999999999964 3678999999999764431 11 11
Q ss_pred -CC-------cccccc------CCccccccccccCCCccHHHHHHHHHhCCC-eEEEeCHHHHHHHHHHH-HhcCCeecc
Q 009781 380 -GW-------KDFKPV------RANTTFASAIQIGDPVSIDRAVYALKNCDG-IVEEATEEELMDVSAQA-DSTGMFVCP 443 (526)
Q Consensus 380 -G~-------~~~~~~------~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g-~~v~Vsd~ei~~A~~~l-~~~Gi~veP 443 (526)
|. ..+.+. ....+++.|++. |.-.+. ...++..+. ..+.|+|+|+++|.++| +.|||+++|
T Consensus 552 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy--~gvgp~-~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~ 628 (695)
T PRK13802 552 TGELGMFQGAKSYLLENDEGQTLDTYSISAGLDY--ASVGPE-HAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAI 628 (695)
T ss_pred cCCccccccceeecccCCCCCccCccccccccCC--CCCCch-hHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccc
Confidence 21 112221 123577778872 222222 222333333 23899999999999997 779999999
Q ss_pred hHHHHHHHHHHHHHcCCCC--CCCeEEEEECCCCCCchHHHHhhhcchhhHH
Q 009781 444 HTGVALSALIKLRCKGVIG--KTDKTVVVSTAHGLKFTQSKIDYHSQNIKDM 493 (526)
Q Consensus 444 ~sA~alAal~~l~~~g~i~--~~~~vVvv~TG~g~K~~~~~~~~~~~~~~~~ 493 (526)
+||.|+|+++++.++.... .+++||+++||+|.||.+.+.++. +.+|+.
T Consensus 629 eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~~~~-~~~~~~ 679 (695)
T PRK13802 629 ESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAGKWF-GYLTDE 679 (695)
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHHHHh-CCCChh
Confidence 9999999999998753211 256899999999999999987765 555553
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.1e-41 Score=349.87 Aligned_cols=290 Identities=16% Similarity=0.158 Sum_probs=226.3
Q ss_pred hcccccCCCceecccccccccCCCcEEEEecCCCCC--CchhhhhHHHHHHHHHHHHhcCCCceEEEEec--cchHHHHH
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLKRMNKPVIGVGCAS--TGDTSAAL 239 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPT--GSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aS--SGN~g~Al 239 (526)
+++.+|+|||++++.+.+. +|. +||+|+|++||| ||||||++..++..+.+ .| .++|++++ +||||.|+
T Consensus 9 ~~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~---~g--~~~vvt~g~s~gN~g~al 81 (331)
T PRK03910 9 LELAGLPTPLEPLPRLSAA-LGP-DIYIKRDDLTGLALGGNKTRKLEFLLADALA---QG--ADTLITAGAIQSNHARQT 81 (331)
T ss_pred ccccCCCCCceEhhhhhHh-hCC-cEEEEeccCCCCCCCchHHHHHHHHHHHHHH---cC--CCEEEEcCcchhHHHHHH
Confidence 4789999999999988775 565 899999999997 59999999998887643 34 35677763 58999999
Q ss_pred HHHHHhcCCCEEEEcCCCcCCH--------HhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhcCC-eeec-c-CCch
Q 009781 240 SAYCASAGVPSIVFLPANKISI--------AQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSELP-IYLA-N-SLNS 305 (526)
Q Consensus 240 Aa~aa~~Gi~~~V~vP~~~~s~--------~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~~~-~~~~-n-s~Np 305 (526)
|++|+.+|++|+||||.+ .+. .++.+|+.+||+|+.++++ .+.+.+.++++.++.+ .|+. + ..||
T Consensus 82 A~~a~~~G~~~~i~vp~~-~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENP-VPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHhCCcEEEEEcCC-CCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 999999999999999986 443 3457899999999999875 2223445555555543 3433 3 3589
Q ss_pred hHHhHHHHHHHHHHHHcCCC--CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcc
Q 009781 306 LRLEGQKTAAIEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKD 383 (526)
Q Consensus 306 ~~i~G~~T~a~EI~eQl~~~--~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~ 383 (526)
...+|++|+++||++|+++. .||+||+|+|+||+++|++++|+++ + +..++|+||++++..+.....
T Consensus 161 ~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~---~---~~~~vigVe~~~~~~~~~~~~----- 229 (331)
T PRK03910 161 LGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAAL---G---PDIPVIGVTVSRSAAEQEPKV----- 229 (331)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh---C---CCCeEEEEEecCCHHHHHHHH-----
Confidence 99999999999999999752 6999999999999999999999864 2 456899999999766543211
Q ss_pred ccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecch-HHHHHHHHHHHHHcCCC
Q 009781 384 FKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPH-TGVALSALIKLRCKGVI 461 (526)
Q Consensus 384 ~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~-sA~alAal~~l~~~g~i 461 (526)
.....++++++.++.+.. ...+..++++.+.++.|+|+|++++++++ +++|+++||+ +|+++++++++.+++.+
T Consensus 230 ---~~~~~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~ 305 (331)
T PRK03910 230 ---AKLAQATAELLGLPTEIP-RADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRF 305 (331)
T ss_pred ---HHHHHHHHHHcCCCccCC-cccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCC
Confidence 112245666665542111 22234456777888999999999999996 7799999995 99999999999888777
Q ss_pred CCCCeEEEEECCCCC
Q 009781 462 GKTDKTVVVSTAHGL 476 (526)
Q Consensus 462 ~~~~~vVvv~TG~g~ 476 (526)
.++++||+|+||+..
T Consensus 306 ~~~~~Vv~i~tGG~~ 320 (331)
T PRK03910 306 KKGGNVLFIHTGGAP 320 (331)
T ss_pred CCCCeEEEEECCChH
Confidence 778899999999754
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.2e-40 Score=346.23 Aligned_cols=289 Identities=15% Similarity=0.103 Sum_probs=226.2
Q ss_pred hcccccCCCceecccccccccCC-CcEEEEecCCCCC---CchhhhhHHHHHHHHHHHHhcCCCceEEEEe--ccchHHH
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQM-NDLWVKHCGISHT---GSFKDLGMTVLVSQVNRLKRMNKPVIGVGCA--STGDTSA 237 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg~-~~l~lK~E~~nPT---GSFKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~ 237 (526)
++|..|+|||++++++++. +|. .+||+|+|++||+ ||+|||.+..++..+++ .| ..+|++. |+||+|.
T Consensus 8 ~~l~~g~TPl~~~~~l~~~-~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~---~G--~~~vvs~ggs~gN~g~ 81 (337)
T TIGR01274 8 YPLTFGPSPIHPLPRLSQH-LGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQA---QG--CTTLVSIGGIQSNQTR 81 (337)
T ss_pred cccCCCCCCceEhHhhHHh-cCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHH---cC--CCEEEECCCCcchHHH
Confidence 5789999999999999876 664 4899999999987 66699999998887743 34 4677766 7799999
Q ss_pred HHHHHHHhcCCCEEEEcCCCcCC--------HHhHHhHHhCCCEEEEECCCHH----HHHHHHHHHHhcC-Ce-eeccC-
Q 009781 238 ALSAYCASAGVPSIVFLPANKIS--------IAQLVQPIANGAFVLSLDTDFD----GCMQLIREVTSEL-PI-YLANS- 302 (526)
Q Consensus 238 AlAa~aa~~Gi~~~V~vP~~~~s--------~~k~~q~~~~GA~Vi~v~g~~d----d~~~~~~~~~~~~-~~-~~~ns- 302 (526)
|+|++|+++|++|+||||+. ++ ..++.+|+.|||+|+.++++++ +....+.+..++. +. |+++.
T Consensus 82 alA~~a~~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~ 160 (337)
T TIGR01274 82 QVAAVAAHLGMKCVLVQENW-VNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAG 160 (337)
T ss_pred HHHHHHHHcCCcEEEEeccC-CCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCC
Confidence 99999999999999999984 22 4688899999999999998764 3433333333333 22 44443
Q ss_pred --CchhHHhHHHHHHHHHHHHcC--CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHH
Q 009781 303 --LNSLRLEGQKTAAIEILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYK 378 (526)
Q Consensus 303 --~Np~~i~G~~T~a~EI~eQl~--~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~ 378 (526)
.||+..+|++++++||++|+. +..||+||||+|+||+++|++++|+++ + +.+|||+||++++.++.+...
T Consensus 161 ~~~~~~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~---~---~~~~vigV~~~~~~~~~~~~~ 234 (337)
T TIGR01274 161 CSDHPLGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAAD---G---RKDRVIGIDASATPEQTRAQI 234 (337)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHh---C---CCCeEEEEEecCCHHHHHHHH
Confidence 368899999999999999963 236999999999999999999999864 3 568999999999877744311
Q ss_pred hCCccccccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecc-hHHHHHHHHHHHH
Q 009781 379 SGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCP-HTGVALSALIKLR 456 (526)
Q Consensus 379 ~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP-~sA~alAal~~l~ 456 (526)
. ....++++++.+..|..... +.......+..+.|+|+|++++++++ +++|+++|| +||++++|+.++.
T Consensus 235 ~--------~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~ 305 (337)
T TIGR01274 235 L--------RIARNTAEKIGLERDITEDD-VVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMI 305 (337)
T ss_pred H--------HHHHHHHHHhCCCCCcCccc-eEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHH
Confidence 1 11256667776654422110 11123345678999999999999986 779999999 5999999999999
Q ss_pred HcCCCCCCCeEEEEECCC
Q 009781 457 CKGVIGKTDKTVVVSTAH 474 (526)
Q Consensus 457 ~~g~i~~~~~vVvv~TG~ 474 (526)
++|.+.++++||++.||+
T Consensus 306 ~~g~~~~~~~vv~~htGG 323 (337)
T TIGR01274 306 RRGEFKEGSNVLYAHLGG 323 (337)
T ss_pred hcCCCCCCCEEEEEeCCC
Confidence 999999999999999994
No 76
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.2e-40 Score=339.40 Aligned_cols=284 Identities=17% Similarity=0.188 Sum_probs=218.2
Q ss_pred ccccCCCceecccccccccCCCcEEEEecCCCCC--CchhhhhHHHHHHHHHHHHhcCCCceEEEEe--ccchHHHHHHH
Q 009781 166 AFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLKRMNKPVIGVGCA--STGDTSAALSA 241 (526)
Q Consensus 166 l~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPT--GSFKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~AlAa 241 (526)
+...+|||++++.+... .|. +||+|+|++||| ||||||++..++..+.+ .| .+.|+++ |+||+|.|+|+
T Consensus 3 ~~~~~TPl~~~~~l~~~-~g~-~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~---~g--~~~vv~~g~ssGN~g~alA~ 75 (311)
T TIGR01275 3 LIPWPTPIQYLPRISRE-IGA-EIYIKRDDLTGLGIGGNKIRKLEYLLADALS---KG--ADTVITVGAIQSNHARATAL 75 (311)
T ss_pred CCCCCCcceechhhhhh-cCC-eEEEEeccCcCCCCCchhHHHHHHHHHHHHH---cC--CCEEEEcCCchhHHHHHHHH
Confidence 45678999999988775 564 799999999998 99999999988877643 34 4678887 67999999999
Q ss_pred HHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHHHh----cC-C-eeeccC-CchhHHhHHHH
Q 009781 242 YCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT-DFDGCMQLIREVTS----EL-P-IYLANS-LNSLRLEGQKT 313 (526)
Q Consensus 242 ~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~~~----~~-~-~~~~ns-~Np~~i~G~~T 313 (526)
+|+++|++++||||....+..+..+++.|||+|+.+++ +++++.+.++++++ +. . ++..+. .||...+|+++
T Consensus 76 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 155 (311)
T TIGR01275 76 AAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVE 155 (311)
T ss_pred HHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHH
Confidence 99999999999999863344567778999999999985 56666555555443 22 2 333343 58999999999
Q ss_pred HHHHHHHHcCC-CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCch-HHHHHHhCCccccccCCcc
Q 009781 314 AAIEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANP-LYLYYKSGWKDFKPVRANT 391 (526)
Q Consensus 314 ~a~EI~eQl~~-~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~-l~~a~~~G~~~~~~~~~~~ 391 (526)
+++||++|+++ ..||+||+|+|+||+++|++++|+++ + +..+||+||++.+.+ ....+. ...+
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~---~---~~~~vigV~~~~~~~~~~~~~~---------~~~~ 220 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSIL---N---EDIRPVGVAVGRFGEDMTDKFV---------NLVK 220 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh---C---CCCcEEEEEecccHHHHHHHHH---------HHHH
Confidence 99999999963 36999999999999999999999864 2 445899999876422 221111 1234
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecc-hHHHHHHHHHHHHHcCCCCCCCeEEE
Q 009781 392 TFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCP-HTGVALSALIKLRCKGVIGKTDKTVV 469 (526)
Q Consensus 392 Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP-~sA~alAal~~l~~~g~i~~~~~vVv 469 (526)
++++++.++... .+..+++..+..+.|+|+|++++++++ +++|+++|| ++|+++++++++.+++.+. +++||+
T Consensus 221 ~~~~g~~~~~~~----~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~-~~~vv~ 295 (311)
T TIGR01275 221 EIAEGLEVKASE----VIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELG-EKGILF 295 (311)
T ss_pred HHHHHhCCCCCC----CEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCC-CCCEEE
Confidence 666776544211 223334556678999999999999986 779999999 5999999999988776543 678999
Q ss_pred EECCCCC
Q 009781 470 VSTAHGL 476 (526)
Q Consensus 470 v~TG~g~ 476 (526)
++||+..
T Consensus 296 i~tGG~~ 302 (311)
T TIGR01275 296 IHTGGIS 302 (311)
T ss_pred EECCCcc
Confidence 9999753
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.7e-39 Score=359.88 Aligned_cols=301 Identities=20% Similarity=0.193 Sum_probs=229.4
Q ss_pred cCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCC
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGV 248 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 248 (526)
..|||++++++++. +|. +||+|+|++|||||||||++...+..+. +.|++ ..|+++|+||||.|+|++|+++|+
T Consensus 270 rpTPL~~~~~Ls~~-~G~-~IylK~E~lnptGS~K~r~al~~~~~a~---~~g~~-~vi~e~gsGnhG~A~A~~aa~~Gl 343 (610)
T PRK13803 270 RPTPLTEAKRLSDI-YGA-RIYLKREDLNHTGSHKINNALGQALLAK---RMGKT-RIIAETGAGQHGVATATACALFGL 343 (610)
T ss_pred CCCcceeHHHHHHh-hCC-EEEEEeCCCCCcccHHHHHHHHHHHHHH---HcCCC-EEEEecChHHHHHHHHHHHHHcCC
Confidence 47999999999876 664 8999999999999999999887766554 34432 456678999999999999999999
Q ss_pred CEEEEcCCCcCC--HHhHHhHHhCCCEEEEECC---CHHHHH-HHHHHHHhc-C-CeeeccCC---chh--HH-hHHHHH
Q 009781 249 PSIVFLPANKIS--IAQLVQPIANGAFVLSLDT---DFDGCM-QLIREVTSE-L-PIYLANSL---NSL--RL-EGQKTA 314 (526)
Q Consensus 249 ~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v~g---~~dd~~-~~~~~~~~~-~-~~~~~ns~---Np~--~i-~G~~T~ 314 (526)
+|+||||+..+. ..++.+|+.+||+|+.|++ ++.++. +.++++..+ . .+|..++. +|+ .+ .||+|+
T Consensus 344 ~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~ti 423 (610)
T PRK13803 344 KCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVI 423 (610)
T ss_pred cEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHH
Confidence 999999986322 4466789999999999984 455663 344444232 2 33443332 443 33 589999
Q ss_pred HHHHHHHcCC---CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc----hHHHHHHhCCcccc--
Q 009781 315 AIEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANAN----PLYLYYKSGWKDFK-- 385 (526)
Q Consensus 315 a~EI~eQl~~---~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~----~l~~a~~~G~~~~~-- 385 (526)
++||++|+.. ..||+||+|+|+||+++|++.+|++ ++.+|||+||+.++. .....+..|.....
T Consensus 424 g~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-------~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g 496 (610)
T PRK13803 424 GEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-------DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHG 496 (610)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-------CCCceEEEEecCCCCcccccccchhhcCCeeeecc
Confidence 9999999852 3699999999999999999999853 367899999999862 23445555532110
Q ss_pred -----------ccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHH
Q 009781 386 -----------PVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALI 453 (526)
Q Consensus 386 -----------~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~ 453 (526)
.....+|++.+++.+ ......++..+...+.++.|+|+|+++|+++| +++|++++++||+++|+++
T Consensus 497 ~~~~~~~~~~g~~~~~~sia~gl~~~--gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~ 574 (610)
T PRK13803 497 SMTYLMQDENGQILEPHSISAGLDYP--GIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLK 574 (610)
T ss_pred ceeeeecccCCcccCCceeeccCCCC--CCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 022346888888744 33344555555555678999999999999997 6799999999999999999
Q ss_pred HHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 454 KLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 454 ~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
++..+ +.++++||+++||+|.|+.+.+.++.
T Consensus 575 ~~~~~--~~~~~~Vvv~lsG~G~kd~~~~~~~~ 605 (610)
T PRK13803 575 EGRKK--FKKKDIVIVNLSGRGDKDIPTLKEYF 605 (610)
T ss_pred Hhchh--cCCCCeEEEEeCCCCcCCHHHHHHHH
Confidence 87543 56788999999999999999876655
No 78
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3.9e-40 Score=338.19 Aligned_cols=280 Identities=15% Similarity=0.113 Sum_probs=213.7
Q ss_pred CCceecccccccccCC-CcEEEEecCCCCCC---chhhhhHHHHHHHHHHHHhcCCCceEEEEe--ccchHHHHHHHHHH
Q 009781 171 SNLFWAERFGKEFLQM-NDLWVKHCGISHTG---SFKDLGMTVLVSQVNRLKRMNKPVIGVGCA--STGDTSAALSAYCA 244 (526)
Q Consensus 171 TPL~~~~~l~~~~lg~-~~l~lK~E~~nPTG---SFKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~AlAa~aa 244 (526)
|||+++++++.. +|. .+||+|+|++|||| |+|||++..++..+.+ .| ...|+++ |+||+|.|+|++|+
T Consensus 1 TPl~~~~~l~~~-~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~---~g--~~~vv~~ggs~GN~g~alA~~a~ 74 (307)
T cd06449 1 TPIQYLPRLSEH-LGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALA---KG--ADTLVTVGGIQSNHTRQVAAVAA 74 (307)
T ss_pred CcccchhHHHHh-hCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHH---cC--CCEEEECCCchhHHHHHHHHHHH
Confidence 899999988776 643 48999999999995 5599999998887643 33 4678887 68999999999999
Q ss_pred hcCCCEEEEcCCCcCC--------HHhHHhHHhCCCEEEEECCCHHHH----H-HHHHHHHhcCC-eee-ccC--CchhH
Q 009781 245 SAGVPSIVFLPANKIS--------IAQLVQPIANGAFVLSLDTDFDGC----M-QLIREVTSELP-IYL-ANS--LNSLR 307 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s--------~~k~~q~~~~GA~Vi~v~g~~dd~----~-~~~~~~~~~~~-~~~-~ns--~Np~~ 307 (526)
++|++|+||||.+ .+ ..++.+|+.+||+|+.++.++++. . +.++++.++.+ .|+ .+. .||..
T Consensus 75 ~~G~~~~i~v~~~-~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (307)
T cd06449 75 KLGLKCVLVQENW-VPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG 153 (307)
T ss_pred HcCCeEEEEecCC-CCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc
Confidence 9999999999986 44 357888999999999999875431 2 22333333322 343 444 39999
Q ss_pred HhHHHHHHHHHHHHcCCC--CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcccc
Q 009781 308 LEGQKTAAIEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFK 385 (526)
Q Consensus 308 i~G~~T~a~EI~eQl~~~--~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~ 385 (526)
++|++|+++||++|+++. .||+||+|+|+||+++|++++|+++ + +.+|||+|+++++.++..+-.. ...
T Consensus 154 ~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~---~---~~~~ii~V~~~~~~~~~~~~~~---~~~ 224 (307)
T cd06449 154 GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAAL---G---RQRRVIGIDASAKPEKTKAQVL---RIA 224 (307)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhc---C---CCCeEEEEEecCchHHHHHHHH---HHH
Confidence 999999999999998642 5999999999999999999998754 3 5579999999998777543110 000
Q ss_pred ccCCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecc-hHHHHHHHHHHHHHcCCCCC
Q 009781 386 PVRANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCP-HTGVALSALIKLRCKGVIGK 463 (526)
Q Consensus 386 ~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP-~sA~alAal~~l~~~g~i~~ 463 (526)
. .+++ ++ +.+... ..+...++..+.++.|+|+|++++++++ +++|+++|| ++|++++++.++.+++.+.+
T Consensus 225 ---~-~~~~-~~--g~~~~~-~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~ 296 (307)
T cd06449 225 ---Q-AKLA-EE--GLEVKE-EDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKE 296 (307)
T ss_pred ---H-HHHH-Hc--CCCCCc-ccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCC
Confidence 0 1111 11 111111 1222334556778999999999999986 679999999 79999999999999888888
Q ss_pred CCeEEEEECCC
Q 009781 464 TDKTVVVSTAH 474 (526)
Q Consensus 464 ~~~vVvv~TG~ 474 (526)
+++||+++||+
T Consensus 297 ~~~vv~i~TGG 307 (307)
T cd06449 297 GSKVLFIHLGG 307 (307)
T ss_pred CCeEEEEeCCC
Confidence 89999999994
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=6.9e-35 Score=302.11 Aligned_cols=282 Identities=17% Similarity=0.150 Sum_probs=208.6
Q ss_pred hhcccccCCCceecccccccccCCCcEEEEecCCCCC--CchhhhhHHHHHHHHHHHHhcCCCceEEE--EeccchHHHH
Q 009781 163 IVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLKRMNKPVIGVG--CASTGDTSAA 238 (526)
Q Consensus 163 ~vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPT--GSFKDRga~~~v~~a~~~~~~g~~~~~Vv--~aSSGN~g~A 238 (526)
.+++.+++|||++++++... .|. +||+|+|++||+ ||||||++..++..+.+ .|. .+|+ ++|+||||.|
T Consensus 14 ~~~l~~~~TPl~~~~~l~~~-~g~-~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~---~G~--~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 14 RVELIPWETPIQYLPNISRE-LGA-DVYVKRDDLTGLGIGGNKIRKLEYLLGDALS---RGA--DVVITVGAVHSNHAFV 86 (329)
T ss_pred CcccCCCCCCcccchhhHHH-hCC-eEEEEcccccCCCCCcchHHHHHhHHHHHHH---cCC--CEEEEeCccHHHHHHH
Confidence 45899999999999888765 665 899999999997 89999999988887643 343 4565 5999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC--C---HHHHHHHHHHHHhcC-CeeeccC--CchhHHhH
Q 009781 239 LSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT--D---FDGCMQLIREVTSEL-PIYLANS--LNSLRLEG 310 (526)
Q Consensus 239 lAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~---~dd~~~~~~~~~~~~-~~~~~ns--~Np~~i~G 310 (526)
+|++|+++|++++||+|.......+..+++.+||+++.++. + .+.+.+.++++.++. ..|+.+. .||...+|
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g 166 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLG 166 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHH
Confidence 99999999999999999752233355667899999987763 2 234566666666554 3455443 58999999
Q ss_pred HHHHHHHHHHHcCC--CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCC-chHHHHHHhCCcccccc
Q 009781 311 QKTAAIEILQQFDW--EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANA-NPLYLYYKSGWKDFKPV 387 (526)
Q Consensus 311 ~~T~a~EI~eQl~~--~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~-~~l~~a~~~G~~~~~~~ 387 (526)
+.+...||++|+++ ..+|+||+|+|+||+++|++++|++. + |..|||+|++.+. ..+.+.+.........
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~---~---~~~kVigv~~~~~~~~~~~~~~~~~~~~~~- 239 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAIL---N---AEWRVVGIAVGSFGEKMKEKVKNLVKKTKE- 239 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh---C---CCCeEEEEEecCCHHHHHHHHHHHHHHHHH-
Confidence 99888899999974 36999999999999999999998753 3 5679999999662 2333332222100000
Q ss_pred CCcccccccccc--CCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecc-hHHHHHHHHHHHHHcCCCCC
Q 009781 388 RANTTFASAIQI--GDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCP-HTGVALSALIKLRCKGVIGK 463 (526)
Q Consensus 388 ~~~~Tia~~i~i--~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP-~sA~alAal~~l~~~g~i~~ 463 (526)
..++.. ..|.. .+.+.|.+..++ +|.+++++++ +++|+++|| +||.+++|++++.+++..
T Consensus 240 ------~~g~~~~~~~~~~-------~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~-- 303 (329)
T PRK14045 240 ------LLGVKVKVQEPEL-------YDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGEL-- 303 (329)
T ss_pred ------HhCCCCCccceEe-------cccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCC--
Confidence 001110 01111 122234566777 6999999986 789999999 999999999999987632
Q ss_pred CCeEEEEECCC
Q 009781 464 TDKTVVVSTAH 474 (526)
Q Consensus 464 ~~~vVvv~TG~ 474 (526)
+.+||+++||+
T Consensus 304 ~~~iv~ihtGG 314 (329)
T PRK14045 304 GEKILFIHTGG 314 (329)
T ss_pred CCCEEEEECCC
Confidence 67999999997
No 80
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=288.52 Aligned_cols=285 Identities=20% Similarity=0.226 Sum_probs=214.0
Q ss_pred cccCCCceecccccccccCC-CcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHh
Q 009781 167 FEGNSNLFWAERFGKEFLQM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCAS 245 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~-~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~ 245 (526)
.-|+|||+.+..+.. |+ .++++|+|++||+||.|||-+..|+..|+..+....+..+++++||||||.+||+.|+.
T Consensus 49 liG~TPlv~ln~i~~---g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~ 125 (362)
T KOG1252|consen 49 LIGNTPLVKLNKIAG---GCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAAL 125 (362)
T ss_pred HhCCCceEEeccccC---CccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHH
Confidence 458999999988732 44 59999999999999999999999999987655444556899999999999999999999
Q ss_pred cCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC--H---HHHHHHHHHHHhcCC-eee----ccCCchhHHhHHHHHH
Q 009781 246 AGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD--F---DGCMQLIREVTSELP-IYL----ANSLNSLRLEGQKTAA 315 (526)
Q Consensus 246 ~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~---dd~~~~~~~~~~~~~-~~~----~ns~Np~~i~G~~T~a 315 (526)
.|++|+++||+. ++.+|+.+|+++||+|+.++.. + +-+...+.++..+.+ .|. .|+-||. .++.|++
T Consensus 126 ~Gyk~i~tmP~~-ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~--~hy~ttg 202 (362)
T KOG1252|consen 126 RGYKCIITMPEK-MSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPL--AHYETTG 202 (362)
T ss_pred cCceEEEEechh-hhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcc--ccccccc
Confidence 999999999996 9999999999999999999842 2 235666666655542 333 3445665 7899999
Q ss_pred HHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCcccccc
Q 009781 316 IEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFAS 395 (526)
Q Consensus 316 ~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~ 395 (526)
.||+.|+. ..+|.||.++|+||+++|+.+ .+++.+ +..+||+|+|.. +.++.....|. . .--..
T Consensus 203 ~EI~~q~~-g~vDi~V~gaGTGGTitgvGR---ylke~~---~~~kVv~vdp~~-S~~~~~~~~g~-------~-~~~I~ 266 (362)
T KOG1252|consen 203 PEIWRQLD-GKVDIFVAGAGTGGTITGVGR---YLKEQN---PNIKVVGVDPQE-SIVLSGGKPGP-------T-FHKIQ 266 (362)
T ss_pred HHHHHHhc-CCCCEEEeccCCCceeechhH---HHHHhC---CCCEEEEeCCCc-ceeccCCCCCC-------C-cccee
Confidence 99999997 489999999999999999998 555666 567999999988 44443222221 0 01123
Q ss_pred ccccCC-CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHH-HHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEE-C
Q 009781 396 AIQIGD-PVSIDRAVYALKNCDGIVEEATEEELMDVSAQ-ADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVS-T 472 (526)
Q Consensus 396 ~i~i~~-P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~-l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~-T 472 (526)
||+.+. |.++.+. ..+..+.++++|++.+.++ +.+||+.++.+|+++++|++++.++-+ ...+.+++. .
T Consensus 267 GIGyg~~p~~ld~~------~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~e--n~~kliV~~~p 338 (362)
T KOG1252|consen 267 GIGYGFIPTTLDTK------LVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPE--NAGKLIVVTFP 338 (362)
T ss_pred ccccCcCccccchH------HHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccc--cCCcEEEEECC
Confidence 444332 4443321 1233456777777777776 589999999999999999998887643 333444444 7
Q ss_pred CCCCCchHH
Q 009781 473 AHGLKFTQS 481 (526)
Q Consensus 473 G~g~K~~~~ 481 (526)
.+|..|...
T Consensus 339 d~ge~Y~st 347 (362)
T KOG1252|consen 339 DFGERYLST 347 (362)
T ss_pred Ccchhhhhh
Confidence 777777655
No 81
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-32 Score=264.72 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=229.6
Q ss_pred cCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCC
Q 009781 169 GNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGV 248 (526)
Q Consensus 169 G~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 248 (526)
|+|||++...|++. -|+ +++.|.|++||.||.|||.+.+++..+++.+++-.+ -.|++.|+|+||+++|..|..+|.
T Consensus 48 GnTpliri~sLs~a-TGc-nIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~~a~Gy 124 (391)
T KOG1481|consen 48 GNTPLIRINSLSNA-TGC-NILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVARALGY 124 (391)
T ss_pred CCCceEEeeccccc-ccc-chhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhhhhcCc
Confidence 79999999999887 777 899999999999999999999999999876554333 689999999999999999999999
Q ss_pred CEEEEcCCCcCCHHhHHhHHhCCCEEEEECC----CHHHHHHHHHHHHhc----C-C--eeeccCC-chhH-HhHHHHHH
Q 009781 249 PSIVFLPANKISIAQLVQPIANGAFVLSLDT----DFDGCMQLIREVTSE----L-P--IYLANSL-NSLR-LEGQKTAA 315 (526)
Q Consensus 249 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g----~~dd~~~~~~~~~~~----~-~--~~~~ns~-Np~~-i~G~~T~a 315 (526)
+|+|+||.+ .+.+|...+..+||+|..|.. +-+.-...+++.+.+ . + .++++++ |+.. ..++.|+|
T Consensus 125 k~~I~mPdd-qs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTG 203 (391)
T KOG1481|consen 125 KCHIYMPDD-QSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTG 203 (391)
T ss_pred ceEEECCCh-HHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcC
Confidence 999999997 689999999999999988863 222222333333322 1 1 3556664 6654 56789999
Q ss_pred HHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCC-------ccccccC
Q 009781 316 IEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGW-------KDFKPVR 388 (526)
Q Consensus 316 ~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~-------~~~~~~~ 388 (526)
.|||.|..+ ..|.|+..+|+||+++|+.|.+++ .. +....++.+.|.+ +-++.....|. ..-.+..
T Consensus 204 PEIw~QtkG-niDaFia~~GTGGTiaGVskyLke---k~--~~~v~~~laDPpG-SGlYnkV~~GVmy~~~e~eG~r~r~ 276 (391)
T KOG1481|consen 204 PEIWHQTKG-NIDAFIAGTGTGGTIAGVSKYLKE---KS--DGRVAVFLADPPG-SGLYNKVNYGVMYDHIETEGTRRRN 276 (391)
T ss_pred cHHHHhhcC-CcceEEeccCCCcchHHHHHHHhh---cC--CCceEEEEeCCCC-CchhhhhhhhhhhhhhhhcCcccCC
Confidence 999999984 799999999999999999986553 21 1224778888888 53443333331 0012334
Q ss_pred CccccccccccCC-CccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHcCCCCCCCe
Q 009781 389 ANTTFASAIQIGD-PVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCKGVIGKTDK 466 (526)
Q Consensus 389 ~~~Tia~~i~i~~-P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~ 466 (526)
..+||.+||++.. ..|+ .......+..+.|+|++.++..+.| ..+|+|++-+||+...|+.++++. +.++.+
T Consensus 277 q~dti~EGIGinRiT~Nf----~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~--LgpG~~ 350 (391)
T KOG1481|consen 277 QVDTITEGIGINRITGNF----QMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKT--LGPGHT 350 (391)
T ss_pred Ccchhhhccccccccccc----ccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHh--cCCCce
Confidence 5679999998764 2232 2223445667899999999999975 889999999999998888887765 579999
Q ss_pred EEEEECCCCCCchHHH
Q 009781 467 TVVVSTAHGLKFTQSK 482 (526)
Q Consensus 467 vVvv~TG~g~K~~~~~ 482 (526)
||.++|++|.++....
T Consensus 351 iVtilCDsG~rh~sk~ 366 (391)
T KOG1481|consen 351 IVTILCDSGSRHLSKL 366 (391)
T ss_pred EEEEEeCCcchHHHHh
Confidence 9999999999987653
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=4.7e-26 Score=225.71 Aligned_cols=303 Identities=19% Similarity=0.204 Sum_probs=220.6
Q ss_pred cccccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHH
Q 009781 165 SAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 165 sl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
...-..|||+.++++.+. +| .+||+|+|.+|.||++|..=+ +.++.-.++.|++ +.|.+.-.|-||.|.|.+|+
T Consensus 51 ~Y~GRptpLy~a~~Lt~~-~g-akiyLKREDL~HtGAHKiNN~---lGQ~LLAkrMGK~-riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 51 DYAGRPTPLYFAERLTEH-LG-AKIYLKREDLNHTGAHKINNA---LGQALLAKRMGKT-RIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HhCCCCChhHHHHHHHHh-hC-ceEEEehhhhcccchhhHHHH---HHHHHHHHHhCCc-eEEeecCCCcccHHHHHHHH
Confidence 445578999999999887 78 699999999999999999855 3444333567764 67888888999999999999
Q ss_pred hcCCCEEEEcCCCcCCHHh--HHhHHhCCCEEEEECCC---HHH-HHHHHHHHHhc--CCeeeccC---Cchh---HHhH
Q 009781 245 SAGVPSIVFLPANKISIAQ--LVQPIANGAFVLSLDTD---FDG-CMQLIREVTSE--LPIYLANS---LNSL---RLEG 310 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~~k--~~q~~~~GA~Vi~v~g~---~dd-~~~~~~~~~~~--~~~~~~ns---~Np~---~i~G 310 (526)
++|++|+|+|-...+...+ .-.|+.+||+|+.|... ..| +.+..+..... ...|.+.+ -+|+ ..+-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999765343322 33578899999999743 333 34445555443 23455443 2443 5678
Q ss_pred HHHHHHHHHHHcC---CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHH-----HHHHhCCc
Q 009781 311 QKTAAIEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLY-----LYYKSGWK 382 (526)
Q Consensus 311 ~~T~a~EI~eQl~---~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~-----~a~~~G~~ 382 (526)
|+.|+.|.-+|+- .+.||.||.++|+|+|..|++..|.. ++..++|||++.+- -+. ..+..|+.
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-------d~~V~LiGvEaaG~-Gi~t~~HaAtl~~G~~ 276 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-------DESVRLIGVEAAGK-GIETGKHAATLTAGRP 276 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-------CCCceEEEeccCcC-ccCCCccceeecCCCc
Confidence 9999999877742 25899999999999999999976642 35679999999772 111 12233321
Q ss_pred ccc-------------ccCCccccccccccCCCccHHHHHHHHHhCC-CeEEEeCHHHHHHHHHHH-HhcCCeecchHHH
Q 009781 383 DFK-------------PVRANTTFASAIQIGDPVSIDRAVYALKNCD-GIVEEATEEELMDVSAQA-DSTGMFVCPHTGV 447 (526)
Q Consensus 383 ~~~-------------~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~-g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~ 447 (526)
.+- ......+|+.|++ .|.-.++..++ ++++ -..+.|+|+|+++|.+.| +.|||+.-..|+-
T Consensus 277 GvlhG~~tyllQd~~GQi~e~hSISAGLD--YPgVGPeha~l-~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsH 353 (396)
T COG0133 277 GVLHGMKTYLLQDEDGQILESHSISAGLD--YPGVGPEHAYL-KDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSH 353 (396)
T ss_pred eeeecccceeeEcCCCCEeeeeeeccCCC--CCCCChhHHHH-HhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHH
Confidence 110 0112456666776 46666665443 4444 346799999999999998 7799999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 448 ALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 448 alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
|+|.+.++..+. .+++.+|+-++|.|.|+...+.++.
T Consensus 354 AlA~a~kla~~~--~~~~~ivvnlSGRGDKDv~tv~~~l 390 (396)
T COG0133 354 ALAYALKLAPKL--PKDEIIVVNLSGRGDKDVFTVAKLL 390 (396)
T ss_pred HHHHHHHhchhc--CCCcEEEEEccCCCcccHHHHHHHh
Confidence 999999988663 4666888889999999999987665
No 83
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.92 E-value=6.3e-24 Score=212.42 Aligned_cols=314 Identities=18% Similarity=0.153 Sum_probs=217.9
Q ss_pred hhcccccCCCceecccccccccC-CCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHH
Q 009781 163 IVSAFEGNSNLFWAERFGKEFLQ-MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSA 241 (526)
Q Consensus 163 ~vsl~eG~TPL~~~~~l~~~~lg-~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa 241 (526)
+....-..+||+++++|.+. ++ -.++|+|.|++|||||+|..-+. .++...+++|++ ..|.+.-.|-+|.|+|.
T Consensus 115 iy~y~gRpspL~~AkRLte~-~q~ga~IylKrEdlnh~GsHKiNnav---~QallakrlGkk-nviaETGAGQhGvatA~ 189 (477)
T KOG1395|consen 115 IYKYLGRPSPLIRAKRLTEH-CQTGARIYLKREDLNHTGSHKINNAV---AQALLAKRLGKK-NVIAETGAGQHGVATAT 189 (477)
T ss_pred HHHHcCCCchhHHHHHHHHH-hCCCCEEEEEecCCCccccCCcccHH---HHHHHHHHhccc-ceeeccCCCccchHHHH
Confidence 44445578999999999876 65 36899999999999999999764 444444566764 56777778899999999
Q ss_pred HHHhcCCCEEEEcCCCcC--CHHhHHhHHhCCCEEEEECCC----HHHHHHHHHHHHhc--CCeeeccC-C--chh---H
Q 009781 242 YCASAGVPSIVFLPANKI--SIAQLVQPIANGAFVLSLDTD----FDGCMQLIREVTSE--LPIYLANS-L--NSL---R 307 (526)
Q Consensus 242 ~aa~~Gi~~~V~vP~~~~--s~~k~~q~~~~GA~Vi~v~g~----~dd~~~~~~~~~~~--~~~~~~ns-~--Np~---~ 307 (526)
.|++.|++|+|+|-.+.. ..-+..+|+.+||+|+.|... .|+..+..+..... .-.|.+.+ . .|+ .
T Consensus 190 a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~v 269 (477)
T KOG1395|consen 190 ACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVV 269 (477)
T ss_pred HHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHH
Confidence 999999999999976522 234455788999999999743 12222222222211 11233332 2 332 2
Q ss_pred HhHHHHHHHHHHHHcC---CCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCC----chHHHHHHhC
Q 009781 308 LEGQKTAAIEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANA----NPLYLYYKSG 380 (526)
Q Consensus 308 i~G~~T~a~EI~eQl~---~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~----~~l~~a~~~G 380 (526)
-.-|.+|+-|-..|.- ...||.||.++|+|+|.+|++.-|.. +...++|+|++.+- .....-+..|
T Consensus 270 r~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-------dk~v~~igveaagdg~dtp~hsatltag 342 (477)
T KOG1395|consen 270 RTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-------DKSVGMIGVEAAGDGVDTPKHSATLTAG 342 (477)
T ss_pred HHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-------cchhheeeeeecccccCCcchhceeecc
Confidence 3456678877766631 24799999999999999999987753 24457788887652 1111222222
Q ss_pred Ccc-------cc------ccCCccccccccccCCCccHHHHHHHHHhCC-CeEEEeCHHHHHHHHHHH-HhcCCeecchH
Q 009781 381 WKD-------FK------PVRANTTFASAIQIGDPVSIDRAVYALKNCD-GIVEEATEEELMDVSAQA-DSTGMFVCPHT 445 (526)
Q Consensus 381 ~~~-------~~------~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~-g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~s 445 (526)
... +. ..-.+++|+.|++ .|.-.++..+ +++++ -.+++|+|.|.+++.+++ +.|||+.-|.+
T Consensus 343 d~Gv~hG~~ty~lq~~dGqi~~phsIsAGLd--YpGvgPels~-~k~~grae~isitd~eclegfk~~srlEGIIPAlEs 419 (477)
T KOG1395|consen 343 DVGVFHGVTTYVLQDTDGQIFDPHSISAGLD--YPGVGPELSH-LKETGRAEFISITDAECLEGFKQLSRLEGIIPALES 419 (477)
T ss_pred cccccccceeeeeeccCCccccCCccccCCC--CCCCChhHHH-HHhcCceeEEecChHHHHHHHHHHHHhcccccCCch
Confidence 110 00 0013456666765 4544454443 45544 457899999999999997 77999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhhcchhhHH
Q 009781 446 GVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYHSQNIKDM 493 (526)
Q Consensus 446 A~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~~~~~~~~ 493 (526)
.-|+|+...+.+. +.++..+|+-.+|+|.|+.+++.+|+..+.|++
T Consensus 420 sHAva~~~~lck~--l~~~k~ivi~~sGrGdkDvqS~~kyL~~lgpki 465 (477)
T KOG1395|consen 420 SHAVAGEAELCKT--LPEDKVIVINISGRGDKDVQSVAKYLPGLGPKI 465 (477)
T ss_pred hhHHHHHHHhccc--cCCCcEEEEEecCCCCchHHHHHHhcccccccc
Confidence 9999998777654 467888888899999999999999998877774
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.91 E-value=3.1e-23 Score=206.06 Aligned_cols=308 Identities=19% Similarity=0.140 Sum_probs=214.4
Q ss_pred cccCCCceecccccccccCC-CcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEE-eccchHHHHHHHHHH
Q 009781 167 FEGNSNLFWAERFGKEFLQM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGC-ASTGDTSAALSAYCA 244 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~-~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~-aSSGN~g~AlAa~aa 244 (526)
.-..|||+++++|.+. +|. .++|+|.|+..||||+|...+..-+- +.++.| ...+++ .-.|-.|.|++.+++
T Consensus 75 ~gRPTPL~RA~~LE~~-L~tparIYyK~Eg~tptGSHKiNTAlAqaY---yak~eg--~~rl~TETGAGQWGsAlslA~a 148 (432)
T COG1350 75 IGRPTPLIRAKNLEEA-LGTPARIYYKYEGVTPTGSHKINTALAQAY---YAKKEG--AKRLTTETGAGQWGSALSLAAA 148 (432)
T ss_pred hCCCCchhhhhhHHHH-hCCCcEEEEEecccCCCCCCCcchHHHHHH---HHHhcC--ceeeecccCCchHHHHHHHHHH
Confidence 3369999999999876 776 49999999999999999998854433 334444 334443 445778999999999
Q ss_pred hcCCCEEEEcCCC--cCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHH-------------------H-HhcCCeeeccC
Q 009781 245 SAGVPSIVFLPAN--KISIAQLVQPIANGAFVLSLDTDFDGCMQLIRE-------------------V-TSELPIYLANS 302 (526)
Q Consensus 245 ~~Gi~~~V~vP~~--~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~-------------------~-~~~~~~~~~ns 302 (526)
..|++|+|||-.. ...+-++..|..|||+|+.-+.+..+.-+...+ . ..++.-|.+.|
T Consensus 149 lf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGS 228 (432)
T COG1350 149 LFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGS 228 (432)
T ss_pred HhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchh
Confidence 9999999999642 123455677889999999888776665443221 1 11223566655
Q ss_pred CchhHHhHHHHHHHHHHHHcCC--CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhC
Q 009781 303 LNSLRLEGQKTAAIEILQQFDW--EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSG 380 (526)
Q Consensus 303 ~Np~~i~G~~T~a~EI~eQl~~--~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G 380 (526)
.=-..+++|..+|+|.-+|+.. ..||++|-++|+|+|++|+..-|-.-+..|- ...|+|+|++..|..+. .|
T Consensus 229 VlnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~--~~~~fiAvep~a~P~lT----~G 302 (432)
T COG1350 229 VLNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGK--KETRFIAVEPKACPKLT----KG 302 (432)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCC--ceeEEEEeCCccCCccc----cc
Confidence 4334578899999999666531 4699999999999999999988865555553 33699999999988765 46
Q ss_pred CccccccC------------------CccccccccccC-CCccHHHHHHHH-HhCCCeEEEeCHHHHHHHHHHH-HhcCC
Q 009781 381 WKDFKPVR------------------ANTTFASAIQIG-DPVSIDRAVYAL-KNCDGIVEEATEEELMDVSAQA-DSTGM 439 (526)
Q Consensus 381 ~~~~~~~~------------------~~~Tia~~i~i~-~P~~~~~~l~~l-~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi 439 (526)
++.+.-.+ .++-.|-|++.- ... .+..+ ++-.-.....+++|+++|.+.+ +.||+
T Consensus 303 eY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aP----tls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGi 378 (432)
T COG1350 303 EYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAP----TLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGI 378 (432)
T ss_pred eeeccCCchhccchhhhhhccCCCccCCCcccccccccCcCh----HHHHHHHcCcccceecChHHHHHHHHHHHHhcCC
Confidence 54443211 112223344311 111 23333 3333445789999999999986 77999
Q ss_pred eecchHHHHHHHHHHHHHcCCC-CCCCeEEEEECCCCCCchHHHHhhhcchh
Q 009781 440 FVCPHTGVALSALIKLRCKGVI-GKTDKTVVVSTAHGLKFTQSKIDYHSQNI 490 (526)
Q Consensus 440 ~veP~sA~alAal~~l~~~g~i-~~~~~vVvv~TG~g~K~~~~~~~~~~~~~ 490 (526)
+.-|.|+-|+.++...+.+..- .+...|++-++|||+=+.+...+|..+++
T Consensus 379 VPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl~g~l 430 (432)
T COG1350 379 VPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYLEGEL 430 (432)
T ss_pred ccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHhhhhc
Confidence 9999999999988776543211 12335566789999999988877775543
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.85 E-value=7.3e-20 Score=180.52 Aligned_cols=291 Identities=19% Similarity=0.193 Sum_probs=225.9
Q ss_pred CcEEEEecCCCC-CCchhhhhHHHHHHH-HHHH-HhcCC-------------------CceEEEEeccchHHHHHHHHHH
Q 009781 187 NDLWVKHCGISH-TGSFKDLGMTVLVSQ-VNRL-KRMNK-------------------PVIGVGCASTGDTSAALSAYCA 244 (526)
Q Consensus 187 ~~l~lK~E~~nP-TGSFKDRga~~~v~~-a~~~-~~~g~-------------------~~~~Vv~aSSGN~g~AlAa~aa 244 (526)
+++|+|.+++-| +||.|.||-.+-+.. ++.+ .+.|- ....|.+.||||.|.|+...++
T Consensus 101 G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA 180 (443)
T COG3048 101 GRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSA 180 (443)
T ss_pred cceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhh
Confidence 489999999999 999999998766543 3332 22220 1236888999999999999999
Q ss_pred hcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcC-CeeeccCCchh-HHhHHHHHHHHHHHHc
Q 009781 245 SAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSEL-PIYLANSLNSL-RLEGQKTAAIEILQQF 322 (526)
Q Consensus 245 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~-~~~~~ns~Np~-~i~G~~T~a~EI~eQl 322 (526)
+.|.+++|-|..+ ...+|...+++.|++|+..+.||..+.+.-++.++.. ..|+++..|.- ..+||...+..+-.|+
T Consensus 181 ~lGF~vtVHMSAD-Ar~WKKd~LRs~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~LFLGYaVAa~Rlk~Q~ 259 (443)
T COG3048 181 ALGFKVTVHMSAD-ARAWKKDKLRSHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFIDDENSRTLFLGYAVAAQRLKKQF 259 (443)
T ss_pred hhcceEEEEecch-HHHHHHHHHHhcCceEEEecchhhHHHHHhhhhhccCCceEEecccchhhhhhhHHHHHHHHHHHH
Confidence 9999999999997 5789999999999999999999999988887776654 46788776653 5789999999999997
Q ss_pred CC-------CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcccccc----CCcc
Q 009781 323 DW-------EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPV----RANT 391 (526)
Q Consensus 323 ~~-------~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~----~~~~ 391 (526)
+. ..|-.|.+|+|-||.-.|+..|+|.+. | ....++-++|..++++.--+.+|..+-..+ -...
T Consensus 260 d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~f--g---d~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~ 334 (443)
T COG3048 260 DEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAF--G---DHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNL 334 (443)
T ss_pred HhcCceecCCCceEEEeecCCCCCcchhhhhhHhhh--c---CceEEEEecCCCChHHHHhhhhccccceeeEeeccccc
Confidence 64 357789999999999999999998653 3 345888999999899988888885432221 1346
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecchHHHHHHHHHHHHHc--------C---
Q 009781 392 TFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCPHTGVALSALIKLRCK--------G--- 459 (526)
Q Consensus 392 Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP~sA~alAal~~l~~~--------g--- 459 (526)
|-++|+.++.|+.+- -+++...-+..++|+|+.+++-..+| +.+|+.+||++-+++++..++.+. +
T Consensus 335 TaADGLAVgRpSgfV--gr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~ 412 (443)
T COG3048 335 TAADGLAVGRPSGFV--GRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSA 412 (443)
T ss_pred ccccceeecCccchH--HHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchh
Confidence 899999999999763 34555555667999999999999987 779999999988877775544311 1
Q ss_pred CCCCCCeEEEEECCCCCCchHHHHhh
Q 009781 460 VIGKTDKTVVVSTAHGLKFTQSKIDY 485 (526)
Q Consensus 460 ~i~~~~~vVvv~TG~g~K~~~~~~~~ 485 (526)
.--.+.+.||..||+++--.+.+..|
T Consensus 413 ~~~~natHlvWaTGG~MVPeeeM~~y 438 (443)
T COG3048 413 EQLNNATHLVWATGGGMVPEEEMEAY 438 (443)
T ss_pred hhhcCeeEEEEecCCCcCCHHHHHHH
Confidence 11135678999999987744444333
No 86
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.8e-19 Score=177.63 Aligned_cols=286 Identities=17% Similarity=0.166 Sum_probs=202.8
Q ss_pred hcccccCCCceecccccccccCCCcEEEEecCCCC--CCchhhhhHHHHHHHHHHHHhcCCCceEEEEe--ccchHHHHH
Q 009781 164 VSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISH--TGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCA--STGDTSAAL 239 (526)
Q Consensus 164 vsl~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nP--TGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~Al 239 (526)
.++.-+.||+..+++++.. +|+ ++|+|+|+..+ -|-.|.|-..+++..+.. ++.+++|+. ..-||..++
T Consensus 9 ~~l~~~pTPiq~L~rls~~-lg~-eiYiKRDD~t~l~~gGNK~RKLefll~eal~-----~g~dTlvT~GgiQSNh~r~t 81 (323)
T COG2515 9 MELIFGPTPIQKLPRLSAH-LGV-EIYIKRDDLTGLAFGGNKIRKLEFLLGEALR-----KGADTLVTYGGIQSNHVRQT 81 (323)
T ss_pred cccCCCCChhhhHHHHHHh-cCe-EEEEEcccccccccCccHHHHHHHHHhhhhh-----cCCcEEEEecccchhHHHHH
Confidence 3566778999999999887 784 89999999944 578999999888876532 335677763 334999999
Q ss_pred HHHHHhcCCCEEEEcCCCc---CCHHhHHhHHhCCCEEEEECCCHHH-----HHHHHHHHHhcC-Ceeecc--CCchhHH
Q 009781 240 SAYCASAGVPSIVFLPANK---ISIAQLVQPIANGAFVLSLDTDFDG-----CMQLIREVTSEL-PIYLAN--SLNSLRL 308 (526)
Q Consensus 240 Aa~aa~~Gi~~~V~vP~~~---~s~~k~~q~~~~GA~Vi~v~g~~dd-----~~~~~~~~~~~~-~~~~~n--s~Np~~i 308 (526)
|++|++.|++|+.++-..- .-........-+|+++..++...|- .....+++-++- ..|.+. ..||..-
T Consensus 82 AavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~ 161 (323)
T COG2515 82 AAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGA 161 (323)
T ss_pred HHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcccc
Confidence 9999999999999985421 1112334445689999999865432 122222222221 123333 3699999
Q ss_pred hHHHHHHHHHHHHcCC-CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCcccccc
Q 009781 309 EGQKTAAIEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPV 387 (526)
Q Consensus 309 ~G~~T~a~EI~eQl~~-~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~ 387 (526)
.|+...+.||.+|... ..+|+|||++|+||+.+|+.-||..+ .+..+||++.......-.+ .. + .
T Consensus 162 lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~------~~~~~ViG~~v~~~~~~~~---~q---v--~ 227 (323)
T COG2515 162 LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQL------GPDVEVIGIDVSADPEKLK---EQ---V--L 227 (323)
T ss_pred ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhc------cCCCceEEEeecCCHHHHH---HH---H--H
Confidence 9999999999999874 57999999999999999999887632 2556899998766332221 11 0 0
Q ss_pred CCccccccccccCCCccHHHHHHHHHhCCCeEEEeCHHHHHHHHHHH-HhcCCeecc-hHHHHHHHHHHHHHcCCCCCCC
Q 009781 388 RANTTFASAIQIGDPVSIDRAVYALKNCDGIVEEATEEELMDVSAQA-DSTGMFVCP-HTGVALSALIKLRCKGVIGKTD 465 (526)
Q Consensus 388 ~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~ei~~A~~~l-~~~Gi~veP-~sA~alAal~~l~~~g~i~~~~ 465 (526)
.-.++.+..++...+..+. ........-+.+..+|.+++++.+ +.||+..|| .++.++.+++.+.+++.+..+.
T Consensus 228 ~L~~~~a~~~~~~~~~~v~----~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~ 303 (323)
T COG2515 228 NLAQATAELLGLGSEADVL----LSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGS 303 (323)
T ss_pred HHHHHHHHHcCCCCCceEE----EEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCC
Confidence 0112333334433222111 112333444788899999999986 889999999 9999999999999999998899
Q ss_pred eEEEEECCC
Q 009781 466 KTVVVSTAH 474 (526)
Q Consensus 466 ~vVvv~TG~ 474 (526)
+|+.++||+
T Consensus 304 ~vLfiHtGG 312 (323)
T COG2515 304 PVLFIHTGG 312 (323)
T ss_pred ceEEEEcCC
Confidence 999999996
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.2e-18 Score=164.59 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=169.5
Q ss_pred CEEEEcCCCcCCHHhHHhHH---hCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHHHHHHHcCCC
Q 009781 249 PSIVFLPANKISIAQLVQPI---ANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWE 325 (526)
Q Consensus 249 ~~~V~vP~~~~s~~k~~q~~---~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~ 325 (526)
.+.|++|.+.+++.|..||. .-+.+++.|.|.+|+|++.++.+..+..+
T Consensus 2 ~V~il~p~g~~s~iqE~qmttv~d~nv~~~~v~g~~d~~~d~vk~if~d~~f---------------------------- 53 (266)
T KOG2616|consen 2 SVFILLPKGRCSPIQELQMTTVLDQNVHVFGVEGNFDECQDPVKTIFGDVEF---------------------------- 53 (266)
T ss_pred ceeEeccCCccChhhhcceeeeecCCeeEEEEeeeeccccchHHHHHHHHHH----------------------------
Confidence 57899999999999999987 36889999999999999888776442111
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccCCccccccccccCCCccH
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSI 405 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 405 (526)
+ +||+ |+.|+|++.++| +.+.|++++|.++... +...|++++|+|..|+|+
T Consensus 54 ------------------------a-kmGl--PirklviAtNeN-dIl~rf~ktG~yelse-kvaaT~spamDIlvssN~ 104 (266)
T KOG2616|consen 54 ------------------------A-KMGL--PIRKLVIATNEN-DILHRFVKTGDYELSE-KVAATLSPAMDILVSSNF 104 (266)
T ss_pred ------------------------H-HcCC--chhheeeecccc-HHHHHHHHcCchhhhH-HHHhhcCcchhhcccccH
Confidence 3 7999 888899999999 9999999999765433 345699999999999999
Q ss_pred HHHHHHHHhCCCeE------------------------------EEeCHHHHHHHHHH-HHhcCCeecchHHHHHHHHHH
Q 009781 406 DRAVYALKNCDGIV------------------------------EEATEEELMDVSAQ-ADSTGMFVCPHTGVALSALIK 454 (526)
Q Consensus 406 ~~~l~~l~~~~g~~------------------------------v~Vsd~ei~~A~~~-l~~~Gi~veP~sA~alAal~~ 454 (526)
+|.++++...++.+ +.||++|+.++|+. +...+|++|||+|+|+-...+
T Consensus 105 ER~lwlla~~d~qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r 184 (266)
T KOG2616|consen 105 ERVLWLLAGSDSQITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYR 184 (266)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCceecCHHHHHHHHHhhhhhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHH
Confidence 99999987665542 37999999999998 688999999999999998877
Q ss_pred HHHcCCCCCCCeEEEEECCCCCCchHHHHhhhcc----------hhhHH----HhhhcCCCcccCCCHHHHHHHHHHHHh
Q 009781 455 LRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYHSQ----------NIKDM----ACRLANPPVSVKADFGSVMDVLKKYLL 520 (526)
Q Consensus 455 l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~~~----------~~~~~----~~~~~~~~~~i~~~~~~v~~~~~~~~~ 520 (526)
..++- .++-.++|++|+|+.||++++..+.+. ..|.+ .....+---...+|++.++..++..+.
T Consensus 185 ~idkt--~ps~~~i~lstAh~aKFa~AV~~Al~~~~s~yn~~~~~h~~~l~~l~~~ek~~~~~~radie~lk~~ie~~~~ 262 (266)
T KOG2616|consen 185 QIDKT--QPSIPYICLSTAHPAKFAEAVNAALSTPESPYNFVALVHPEELCTLMRREKNWMFMLRADIEDLKRQIESHLL 262 (266)
T ss_pred HHhcc--CCCCceEEecccChhhhhHHHHHHhcCCCCCccccchhcHHHHHHHHhhhhhhhhhccccHHHHHHHHHHHHH
Confidence 77663 356679999999999999998877653 12222 222223333677899888877776654
Q ss_pred h
Q 009781 521 S 521 (526)
Q Consensus 521 ~ 521 (526)
+
T Consensus 263 n 263 (266)
T KOG2616|consen 263 N 263 (266)
T ss_pred h
Confidence 3
No 88
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=97.50 E-value=8.3e-06 Score=67.21 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=36.7
Q ss_pred eeccCCCCCCCCCcccCCCceeeC--CCCCcceecccccccccCChHHHHHh----hhhhcccccCCC
Q 009781 82 KYVPFNAGPSCTESYSLDEVVYRS--QSGGLLDVQHDMGALKHYDGAYWKAL----FDSRVGKTTWPY 143 (526)
Q Consensus 82 ~y~s~~~t~~cg~~~~~~~~~~~c--~cGGll~v~~d~~~i~~~~~~~~~~~----~~~~~~~~~~~~ 143 (526)
||+| ||+-...++|.+++++| +|||||+ | +.+|.++.+.|+.+ +.+++..++.+|
T Consensus 1 ~y~S---TR~~~~~vsf~eAil~GlA~DGGLyv-P---~~iP~l~~~~l~~l~~~sy~elA~~il~~f 61 (79)
T PF14821_consen 1 KYIS---TRGKSPPVSFKEAILQGLAPDGGLYV-P---EEIPKLSKEELEELKNLSYAELAFEILSPF 61 (79)
T ss_dssp -EEE---TTCCCCEE-HHHHHHH-SBTTSB-EE-E---SS-----HHHHHHHTTS-HHHHHHHHHHHH
T ss_pred Ccee---CCCCCCCcCHHHHHHhCCCCCCeeEe-c---CcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7999 99999999999999998 7999995 4 67888887655544 567777776655
No 89
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=87.66 E-value=0.15 Score=48.64 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=22.8
Q ss_pred CCCCCCcccCCCc---eeeCC-CCCcceecccc
Q 009781 89 GPSCTESYSLDEV---VYRSQ-SGGLLDVQHDM 117 (526)
Q Consensus 89 t~~cg~~~~~~~~---~~~c~-cGGll~v~~d~ 117 (526)
|+.|+.+|+|+++ -|.|| |||.|+ .+|-
T Consensus 120 Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~-~~dn 151 (178)
T PRK06266 120 CPNCHIRFTFDEAMEYGFRCPQCGEMLE-EYDN 151 (178)
T ss_pred CCCCCcEEeHHHHhhcCCcCCCCCCCCe-eccc
Confidence 8999999999876 46796 999995 5553
No 90
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=86.33 E-value=2.1 Score=40.33 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCEE-EEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-eeeccCCchhHHhHHHH
Q 009781 236 SAALSAYCASAGVPSI-VFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKT 313 (526)
Q Consensus 236 g~AlAa~aa~~Gi~~~-V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~~i~G~~T 313 (526)
|..+..+++..|.++- -+-+.+ .-..-+..+...|-.|..+.++-+.+.++.+.+.++++ +-.+...++++ ...
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~d-l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f---~~~ 88 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSD-LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF---DEE 88 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC---Chh
Confidence 4678888888887773 222222 22222333446788999999998888888888877764 33444445544 222
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCchhHH
Q 009781 314 AAIEILQQFDWEVPDWVIVPGGNLGNI 340 (526)
Q Consensus 314 ~a~EI~eQl~~~~pd~VvVP~G~Gg~l 340 (526)
-..+|++++....||.|+|..|+-.-=
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 344455555545799999999976543
No 91
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=86.07 E-value=0.2 Score=46.82 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=22.5
Q ss_pred CCCCCCcccCCCce---eeCC-CCCcceeccc
Q 009781 89 GPSCTESYSLDEVV---YRSQ-SGGLLDVQHD 116 (526)
Q Consensus 89 t~~cg~~~~~~~~~---~~c~-cGGll~v~~d 116 (526)
|+.|+.+|+|+++. |.|| ||+.|+ .+|
T Consensus 112 Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~-~~d 142 (158)
T TIGR00373 112 CPNMCVRFTFNEAMELNFTCPRCGAMLD-YLD 142 (158)
T ss_pred CCCCCcEeeHHHHHHcCCcCCCCCCEee-ecc
Confidence 89999999998774 7897 999995 554
No 92
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=85.51 E-value=0.61 Score=34.09 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCCCCCCcccCCCc--eeeCC-CCCccee
Q 009781 88 AGPSCTESYSLDEV--VYRSQ-SGGLLDV 113 (526)
Q Consensus 88 ~t~~cg~~~~~~~~--~~~c~-cGGll~v 113 (526)
+|.+||.++++++. .++|| ||..+++
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~~~ 33 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRILF 33 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeEEE
Confidence 39999999988766 47897 9998753
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=79.26 E-value=0.73 Score=42.41 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=21.6
Q ss_pred CCCCCCcccCCCce--------eeCC-CCCcceeccc
Q 009781 89 GPSCTESYSLDEVV--------YRSQ-SGGLLDVQHD 116 (526)
Q Consensus 89 t~~cg~~~~~~~~~--------~~c~-cGGll~v~~d 116 (526)
|+.|+.+|+|.++. +.|| ||+.++ .+|
T Consensus 102 Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~-~~d 137 (147)
T smart00531 102 CPNCQSKYTFLEANQLLDMDGTFTCPRCGEELE-EDD 137 (147)
T ss_pred CcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEE-EcC
Confidence 89999999997653 8896 999985 443
No 94
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=78.43 E-value=91 Score=33.16 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=43.8
Q ss_pred EEEecCC---CCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHH--HHHHHHHHhcCCCEEEEcCCC
Q 009781 190 WVKHCGI---SHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTS--AALSAYCASAGVPSIVFLPAN 257 (526)
Q Consensus 190 ~lK~E~~---nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g--~AlAa~aa~~Gi~~~V~vP~~ 257 (526)
++|++.. +|..+|++|.-.++-..-+...+.|++ ..++..-||... ..-|-++...|.+++.+.|-.
T Consensus 157 ~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~-~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~ 228 (364)
T cd08210 157 IIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGR-TLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGL 228 (364)
T ss_pred eeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCc-ceEEEecCCCHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 6787753 689999999876554433333445553 334444445543 444788999999988887753
No 95
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=76.51 E-value=9.7 Score=35.81 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-eeeccCCchhHHhHHHHH
Q 009781 236 SAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTA 314 (526)
Q Consensus 236 g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~~i~G~~T~ 314 (526)
|..+..+++..|.+..--++-...-..-+..+...|..|..+.++-+...++++.+.++++ .-.+...+++.-. .-
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~---~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGP---EE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCh---hh
Confidence 4677888888888732222221111112223445689999999888877777777776654 2223323433211 01
Q ss_pred HHHHHHHcCCCCCcEEEEeCCchhHH
Q 009781 315 AIEILQQFDWEVPDWVIVPGGNLGNI 340 (526)
Q Consensus 315 a~EI~eQl~~~~pd~VvVP~G~Gg~l 340 (526)
-.+|++++....||.|+|..|.---=
T Consensus 88 ~~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 88 EEEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 12255666555799999999976543
No 96
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=76.14 E-value=1.3 Score=39.01 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCcceeeccC-CCCCCCCCcccCCCceeeCC-CCCc
Q 009781 77 HKFSAKYVPF-NAGPSCTESYSLDEVVYRSQ-SGGL 110 (526)
Q Consensus 77 ~~~~~~y~s~-~~t~~cg~~~~~~~~~~~c~-cGGl 110 (526)
..+....++. .+|+.||.+++.++..+.|| ||+.
T Consensus 60 A~L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 60 CDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred CEEEEEeeCcEEEcccCCCEEecCCcCccCcCCCCC
Confidence 3344444442 35999999999887888897 8875
No 97
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=75.06 E-value=1.5 Score=38.75 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.3
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLL 111 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll 111 (526)
+|++||..++..+..+.|| ||+.-
T Consensus 72 ~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 72 ECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred EcccCCCEEecCCcCccCcCCcCCC
Confidence 4999999999987788896 98863
No 98
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=73.13 E-value=28 Score=33.71 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=59.0
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-Cch
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS-LNS 305 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np 305 (526)
+|...||+.|.+++.+....+.++.+++=.. +..+..++...|++++ .+++++-..+.+.+..-...+..-+ .++
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~--~~~~~~~l~~~g~~vv--~~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP--SSDRAQQLQALGAEVV--EADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS--HHHHHHHHHHTTTEEE--ES-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc--chhhhhhhhcccceEe--ecccCCHHHHHHHHcCCceEEeecCcchh
Confidence 4567789999999877777999999988543 3345666788999886 5667666555554432223333333 335
Q ss_pred hHHhHHHHHHHHHHHHcCCCCCcEEE
Q 009781 306 LRLEGQKTAAIEILQQFDWEVPDWVI 331 (526)
Q Consensus 306 ~~i~G~~T~a~EI~eQl~~~~pd~Vv 331 (526)
...+.++.+.. .+.+.+ +.+||
T Consensus 78 ~~~~~~~~li~-Aa~~ag---Vk~~v 99 (233)
T PF05368_consen 78 SELEQQKNLID-AAKAAG---VKHFV 99 (233)
T ss_dssp CHHHHHHHHHH-HHHHHT----SEEE
T ss_pred hhhhhhhhHHH-hhhccc---cceEE
Confidence 56666666543 334444 45554
No 99
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=72.44 E-value=1.2e+02 Score=32.21 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=41.3
Q ss_pred EEEecCC---CCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchH--HHHHHHHHHhcCCCEEEEcCC
Q 009781 190 WVKHCGI---SHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDT--SAALSAYCASAGVPSIVFLPA 256 (526)
Q Consensus 190 ~lK~E~~---nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~ 256 (526)
++|++.. +|..+|++|...+.-..-....+.|+. ..++...|+.+ ....|-++...|.+++++.|-
T Consensus 162 ~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~-~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 162 LIKDDELLADQPYAPFEERVRACMEAVRRANEETGRK-TLYAPNITGDPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred eeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCc-ceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4565544 578999999876543322222334543 33444444555 456688999999999888765
No 100
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=71.33 E-value=33 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.6
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC
Q 009781 269 ANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS 302 (526)
Q Consensus 269 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 302 (526)
..|..|..|.. -..+++.+++.+++-+.|++|.
T Consensus 62 ~~~g~ILfVgT-K~~a~~~V~~~A~r~g~~yV~~ 94 (252)
T COG0052 62 ANGGKILFVGT-KKQAQEPVKEFAERTGAYYVNG 94 (252)
T ss_pred cCCCEEEEEec-hHHHHHHHHHHHHHhCCceecC
Confidence 46889988864 4778999999999988888875
No 101
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=68.86 E-value=2.5 Score=38.45 Aligned_cols=12 Identities=25% Similarity=0.554 Sum_probs=10.5
Q ss_pred CCCCCCCcccCC
Q 009781 88 AGPSCTESYSLD 99 (526)
Q Consensus 88 ~t~~cg~~~~~~ 99 (526)
.|+.||..++++
T Consensus 72 ~C~~CG~~~~~~ 83 (135)
T PRK03824 72 KCRNCGNEWSLK 83 (135)
T ss_pred ECCCCCCEEecc
Confidence 399999999887
No 102
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=68.29 E-value=1.1 Score=39.45 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=18.4
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLL 111 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll 111 (526)
+|+.||.+|++++..+.|| ||+.-
T Consensus 72 ~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 72 RCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EETTTS-EEECHHCCHH-SSSSSS-
T ss_pred ECCCCCCEEecCCCCCCCcCCcCCC
Confidence 5999999999988888897 88864
No 103
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=68.00 E-value=4.2 Score=30.97 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=23.7
Q ss_pred eeeccCCCCCCCCCcccCCCceeeCC-CCCcc
Q 009781 81 AKYVPFNAGPSCTESYSLDEVVYRSQ-SGGLL 111 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~~~~c~-cGGll 111 (526)
|+|.. .+|..||..+...+.+..|+ ||-++
T Consensus 1 ~~~~~-~~C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 1 MNYEG-CKCPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred CCccC-ccChhhCCcccCCCCEEECCCCCCcc
Confidence 44544 67999999998788888996 88776
No 104
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=67.81 E-value=2.5 Score=37.44 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=18.9
Q ss_pred CCCCCCCcccCCCcee-eCC-CCCcc
Q 009781 88 AGPSCTESYSLDEVVY-RSQ-SGGLL 111 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~-~c~-cGGll 111 (526)
+|+.||..++.++..+ +|| ||+.-
T Consensus 73 ~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 73 ECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred EhhhCCCccccCCccCCcCcCCCCCc
Confidence 4999999999876655 497 98863
No 105
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=67.40 E-value=3.4 Score=28.03 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.0
Q ss_pred CCCCCCCcccCCCceeeCC-CCCc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGL 110 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGl 110 (526)
.|+.||..|+.++..++|| ||..
T Consensus 3 ~C~~CGy~y~~~~~~~~CP~Cg~~ 26 (33)
T cd00350 3 VCPVCGYIYDGEEAPWVCPVCGAP 26 (33)
T ss_pred ECCCCCCEECCCcCCCcCcCCCCc
Confidence 4899999999887889997 7753
No 106
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=67.21 E-value=2.7 Score=37.00 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=18.2
Q ss_pred CCCCCCCcccCCCce-eeCC-CCCc
Q 009781 88 AGPSCTESYSLDEVV-YRSQ-SGGL 110 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~-~~c~-cGGl 110 (526)
+|+.||..++..+.. +.|| ||+.
T Consensus 72 ~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 72 WCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred EcccCCCeeecCCccCCcCcCcCCC
Confidence 599999999876554 6797 8875
No 107
>PTZ00323 NAD+ synthase; Provisional
Probab=64.28 E-value=1.7e+02 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=16.9
Q ss_pred HHHHHHcCCCCCcEEEEeCCchhHH
Q 009781 316 IEILQQFDWEVPDWVIVPGGNLGNI 340 (526)
Q Consensus 316 ~EI~eQl~~~~pd~VvVP~G~Gg~l 340 (526)
|.+.+.......+.+|+.+||..-.
T Consensus 150 Y~la~~~~~~g~~~lV~GT~N~sE~ 174 (294)
T PTZ00323 150 FYVAQLLSQEGTPAVVMGTGNFDED 174 (294)
T ss_pred HHHHHHHhhcCCCeEEECCCCchhh
Confidence 4455544323457899999998885
No 108
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=63.78 E-value=98 Score=30.08 Aligned_cols=57 Identities=19% Similarity=0.015 Sum_probs=34.8
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 280 (526)
.+.+|+..+|..|.+++......|.+++++.-..........++...|.++..+..|
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 367888888999999998878889886655322100011122344556666555544
No 109
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=61.93 E-value=35 Score=32.41 Aligned_cols=99 Identities=11% Similarity=-0.038 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCee-eccCCchhHHhHHHHH
Q 009781 236 SAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIY-LANSLNSLRLEGQKTA 314 (526)
Q Consensus 236 g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~-~~ns~Np~~i~G~~T~ 314 (526)
|..+.++++..|.+..--++-...-..-+.+....|..|..++++-+.+.++++.+.++++-. .+.. +.+.-.- -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~---~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE---E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCChH---H
Confidence 456777888888653212221001111122233578899999988877777777777765421 1211 2222111 1
Q ss_pred HHHHHHHcCCCCCcEEEEeCCchh
Q 009781 315 AIEILQQFDWEVPDWVIVPGGNLG 338 (526)
Q Consensus 315 a~EI~eQl~~~~pd~VvVP~G~Gg 338 (526)
-.+|++++....||.|+|..|+--
T Consensus 89 ~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcH
Confidence 234566665557999999998754
No 110
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=61.25 E-value=42 Score=32.09 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=43.2
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCe
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPI 297 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~ 297 (526)
++.|--.|||-+|.++|-++.+.|-+++++.-....+. -.|.+++.+.. .+|..+.+.+...+...
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-------p~~~~~i~v~s-a~em~~~~~~~~~~~Di 85 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-------PPGVKVIRVES-AEEMLEAVKELLPSADI 85 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTEEEEE-SS-HHHHHHHHHHHGGGGSE
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-------cccceEEEecc-hhhhhhhhccccCccee
Confidence 56677789999999999999999999999885432222 24788888874 56676767666555443
No 111
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=56.80 E-value=9.6 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=18.5
Q ss_pred CCCCCCcccCC-CceeeCC-CCCcce
Q 009781 89 GPSCTESYSLD-EVVYRSQ-SGGLLD 112 (526)
Q Consensus 89 t~~cg~~~~~~-~~~~~c~-cGGll~ 112 (526)
|.+||.+++.+ ....+|+ ||.-..
T Consensus 5 C~~Cg~~~~~~~~~~irC~~CG~rIl 30 (44)
T smart00659 5 CGECGRENEIKSKDVVRCRECGYRIL 30 (44)
T ss_pred CCCCCCEeecCCCCceECCCCCceEE
Confidence 89999999886 4466896 887654
No 112
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=56.43 E-value=6.2 Score=32.55 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHH
Q 009781 445 TGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQS 481 (526)
Q Consensus 445 sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~ 481 (526)
+|..+.++..+.++|.+.++++++++..|.|..+...
T Consensus 50 sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~~~~~ 86 (90)
T PF08541_consen 50 SASIPINLADALEEGRIKPGDRVLLVGFGAGFSWGAA 86 (90)
T ss_dssp GGHHHHHHHHHHHTTSSCTTEEEEEEEEETTTEEEEE
T ss_pred hhhHHHHHHHHHHcCCCCCCCEEEEEEEEhhheeEEE
Confidence 4555667778888899999999999999999775443
No 113
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.54 E-value=2e+02 Score=27.65 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=36.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcC-CHHhHHhHHhCCCEEEEECCC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKI-SIAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~ 280 (526)
..+|+..+|..|.+++..-...|.+++++.-.+.. ......+++..|.++..+..|
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 57888888999999998778889987765433211 111223455567777666554
No 114
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=55.23 E-value=5.2 Score=42.59 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCCCCCCCcccCCCce---eeCCCCCcce
Q 009781 87 NAGPSCTESYSLDEVV---YRSQSGGLLD 112 (526)
Q Consensus 87 ~~t~~cg~~~~~~~~~---~~c~cGGll~ 112 (526)
+.|++|+..+++++.. ++||||+.+.
T Consensus 241 ~~c~~C~~~~~~~~~~~~~~~CpCG~~i~ 269 (374)
T TIGR00375 241 TACEACGEPAVSEDAETACANCPCGGRIK 269 (374)
T ss_pred hhhcccCCcCCchhhhhcCCCCCCCCcce
Confidence 5799999999998877 8899999854
No 115
>PRK12496 hypothetical protein; Provisional
Probab=54.95 E-value=6.7 Score=36.85 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=17.8
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcce
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLLD 112 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll~ 112 (526)
.|++||+.|+-+...-.|| ||.++.
T Consensus 129 ~C~gC~~~~~~~~~~~~C~~CG~~~~ 154 (164)
T PRK12496 129 VCKGCKKKYPEDYPDDVCEICGSPVK 154 (164)
T ss_pred ECCCCCccccCCCCCCcCCCCCChhh
Confidence 4999999997433333596 888763
No 116
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=54.13 E-value=63 Score=27.87 Aligned_cols=29 Identities=21% Similarity=-0.020 Sum_probs=19.5
Q ss_pred HHHHHcCCCCCcEEEEeCCchhHHHHHHH
Q 009781 317 EILQQFDWEVPDWVIVPGGNLGNIYAFYK 345 (526)
Q Consensus 317 EI~eQl~~~~pd~VvVP~G~Gg~l~G~~k 345 (526)
+|.+..++..+|.|+-++|++..+--.++
T Consensus 49 ~i~~~~~~~~~d~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 49 QIRELTGGRGVDVVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred ccccccccccceEEEEecCcHHHHHHHHH
Confidence 33344443468999999998877766553
No 117
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=53.32 E-value=2.5e+02 Score=28.83 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=69.1
Q ss_pred EEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHHHHHHHcCC-CCCcEEEEeCCchhHHHHHHHHHHHHH
Q 009781 273 FVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFQMCK 351 (526)
Q Consensus 273 ~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~-~~pd~VvVP~G~Gg~l~G~~kgf~~l~ 351 (526)
+++.|.|-...-...+.+..++.|||.++..=|..+. + -.|++.+-.. ...-+|++-+=++..+..+...+.+++
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~-~---l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~ 77 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLP-Q---LIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELR 77 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHH-H---HHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHH
Confidence 4566665444344566677889999999844333322 2 2345554321 233566777778888888888888888
Q ss_pred HcCCCCCCCeEEEEecCCCchHHHHHHhCCccccccC
Q 009781 352 ELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVR 388 (526)
Q Consensus 352 ~~Gl~~~~prvi~Vq~~~~~~l~~a~~~G~~~~~~~~ 388 (526)
+.|. ..+|+-.++.. ..|.+-|++-+ ...|..
T Consensus 78 ~~~~---~~~ilFLdA~d-~~LirRy~eTR-R~HPL~ 109 (284)
T PF03668_consen 78 KKGI---DVRILFLDASD-EVLIRRYSETR-RRHPLS 109 (284)
T ss_pred hcCC---ceEEEEEECCh-HHHHHHHHhcc-CCCCCC
Confidence 8875 35899999987 78888777653 234443
No 118
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=53.13 E-value=6 Score=35.64 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=17.8
Q ss_pred CCCCCCCcccCCC-ceee-CC-CCCcc
Q 009781 88 AGPSCTESYSLDE-VVYR-SQ-SGGLL 111 (526)
Q Consensus 88 ~t~~cg~~~~~~~-~~~~-c~-cGGll 111 (526)
+|.+||+.|+-.+ .++. || |||-.
T Consensus 3 ~Ct~Cg~~f~dgs~eil~GCP~CGg~k 29 (131)
T PF09845_consen 3 QCTKCGRVFEDGSKEILSGCPECGGNK 29 (131)
T ss_pred ccCcCCCCcCCCcHHHHccCcccCCcc
Confidence 6999999998654 3344 85 99865
No 119
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=52.85 E-value=13 Score=28.69 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCcceeeccCCCCCCCCCcccCC-CceeeCC-CCC
Q 009781 77 HKFSAKYVPFNAGPSCTESYSLD-EVVYRSQ-SGG 109 (526)
Q Consensus 77 ~~~~~~y~s~~~t~~cg~~~~~~-~~~~~c~-cGG 109 (526)
.+.+|.|| |-+||.+-++. ..+++|. ||-
T Consensus 15 r~~~miYi----CgdC~~en~lk~~D~irCReCG~ 45 (62)
T KOG3507|consen 15 RTATMIYI----CGDCGQENTLKRGDVIRCRECGY 45 (62)
T ss_pred CcccEEEE----eccccccccccCCCcEehhhcch
Confidence 55789998 68999987774 4577995 664
No 120
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=52.07 E-value=7.5 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=10.0
Q ss_pred CCCCCCCCCcccC-CCceeeCC-CC
Q 009781 86 FNAGPSCTESYSL-DEVVYRSQ-SG 108 (526)
Q Consensus 86 ~~~t~~cg~~~~~-~~~~~~c~-cG 108 (526)
+++|+.|+.+|.. +..++.|+ ||
T Consensus 2 ~p~Cp~C~se~~y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 2 LPKCPLCGSEYTYEDGELLVCPECG 26 (30)
T ss_dssp S---TTT-----EE-SSSEEETTTT
T ss_pred CCCCCCCCCcceeccCCEEeCCccc
Confidence 4689999998876 45577785 65
No 121
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=50.74 E-value=7.7 Score=34.28 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCCCcceeeccC-CCCCCCCCcccCCCceeeCC-CCCcc
Q 009781 75 YTHKFSAKYVPF-NAGPSCTESYSLDEVVYRSQ-SGGLL 111 (526)
Q Consensus 75 ~~~~~~~~y~s~-~~t~~cg~~~~~~~~~~~c~-cGGll 111 (526)
+.-.+.+.+++. .+|+.|+..++.++..+.|| ||+.-
T Consensus 58 ega~l~Ie~~p~~~~C~~C~~~~~~e~~~~~CP~C~s~~ 96 (115)
T COG0375 58 EGAELHIEEEPAECWCLDCGQEVELEELDYRCPKCGSIN 96 (115)
T ss_pred cCCEEEEEEeccEEEeccCCCeecchhheeECCCCCCCc
Confidence 344455666553 36999999999999889997 99764
No 122
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=50.52 E-value=53 Score=32.89 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=42.5
Q ss_pred HhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchh
Q 009781 268 IANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLG 338 (526)
Q Consensus 268 ~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg 338 (526)
...|..|..++++-+.+.++++.+.++++.-.+...++++-. .-..+|++++....||.|+|..|.--
T Consensus 102 ~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~---~e~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 102 GKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTP---EQRQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCH---HHHHHHHHHHHhcCCCEEEEECCCcH
Confidence 356889999988877777777777666544333323333210 01233666666567999999998644
No 123
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=49.82 E-value=13 Score=28.80 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=17.3
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcceecc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLLDVQH 115 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll~v~~ 115 (526)
+|+.||. |++.| .|+ |||...+++
T Consensus 7 kC~~cg~-YTLke---~Cp~CG~~t~~~~ 31 (59)
T COG2260 7 KCPKCGR-YTLKE---KCPVCGGDTKVPH 31 (59)
T ss_pred cCcCCCc-eeecc---cCCCCCCccccCC
Confidence 4888874 66654 585 999887665
No 124
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=49.46 E-value=2e+02 Score=27.03 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Q 009781 326 VPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAA 368 (526)
Q Consensus 326 ~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~ 368 (526)
+||. |+.+|.|..+--++.|. .++-+|+ ...|+|=||.-
T Consensus 92 rPdv-ii~nGpg~~vp~~~~~~-l~~~~~~--~~~kiIyIES~ 130 (170)
T PF08660_consen 92 RPDV-IISNGPGTCVPVCLAAK-LLRLLGL--RGSKIIYIESF 130 (170)
T ss_pred CCCE-EEEcCCceeeHHHHHHH-HHHHhhc--cCCcEEEEEee
Confidence 5885 56677766655444332 3344454 34688888764
No 125
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=47.57 E-value=17 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred CCCCCCCcccCCC----ceeeCC-CCCcceec
Q 009781 88 AGPSCTESYSLDE----VVYRSQ-SGGLLDVQ 114 (526)
Q Consensus 88 ~t~~cg~~~~~~~----~~~~c~-cGGll~v~ 114 (526)
+|+.||.++.+.+ .+..|+ ||--|+|.
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVV 35 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEE
Confidence 5999999988865 355796 88877763
No 126
>PRK12828 short chain dehydrogenase; Provisional
Probab=46.94 E-value=2.5e+02 Score=26.42 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=42.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLD-TDFDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.+++-...+.|.+++++............++...+++++..+ .+.++..+..+++.++
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 578888889999999876677799876665432111222334555677776655 3344455555554443
No 127
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=46.14 E-value=17 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCCCCCcccCCCc-------eeeCC-CCCccee
Q 009781 89 GPSCTESYSLDEV-------VYRSQ-SGGLLDV 113 (526)
Q Consensus 89 t~~cg~~~~~~~~-------~~~c~-cGGll~v 113 (526)
|+.|+..|.+++. ..+|+ ||..+.+
T Consensus 5 CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 5 CPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYA 37 (38)
T ss_pred CCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEe
Confidence 9999998776532 35785 8887753
No 128
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=45.24 E-value=1.3e+02 Score=29.59 Aligned_cols=51 Identities=22% Similarity=0.151 Sum_probs=33.5
Q ss_pred CCCceEEEEe-ccch---HHHHHHHHHHhcCCCEEEEcCCCcCCH-HhHHhHHhCCC
Q 009781 221 NKPVIGVGCA-STGD---TSAALSAYCASAGVPSIVFLPANKISI-AQLVQPIANGA 272 (526)
Q Consensus 221 g~~~~~Vv~a-SSGN---~g~AlAa~aa~~Gi~~~V~vP~~~~s~-~k~~q~~~~GA 272 (526)
|-+.+.+|++ |.|. +..+||++|++.|=+.++++|+. .+. .-...|..+|.
T Consensus 39 G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~-~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 39 GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE-QSLSEYKKALGEAGL 94 (218)
T ss_pred cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHhhccc
Confidence 4334555555 5553 58899999999999999999985 232 22334545554
No 129
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.95 E-value=77 Score=30.74 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=38.6
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFD 282 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~d 282 (526)
...+|+..+|..|.+++......|.+++++.........-..++...|.++..+..|..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT 66 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCC
Confidence 36788888899999999888889998776643321111122334556878766665543
No 130
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=44.86 E-value=18 Score=22.91 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=12.7
Q ss_pred CCCCCCcccCCC--ceeeCC-CC
Q 009781 89 GPSCTESYSLDE--VVYRSQ-SG 108 (526)
Q Consensus 89 t~~cg~~~~~~~--~~~~c~-cG 108 (526)
|..||..+...+ +.|.|| ||
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 456777766543 567786 55
No 131
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=43.62 E-value=98 Score=28.33 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=26.7
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCC
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPAN 257 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~ 257 (526)
+|...||+.|..++-...+.|.++++++-..
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 5677789999999999999999999998653
No 132
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=43.53 E-value=1.4e+02 Score=29.16 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=40.1
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREV 291 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~ 291 (526)
...+|+..++.-|.++|....+.|.+++++.-.. .......+...|.++..+..| .++..+.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 3578888888889999988888999987764321 122223344567666544433 34444444443
No 133
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=43.48 E-value=5.9 Score=40.97 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=22.5
Q ss_pred eeeccCCCCCCCCCcccCCCce---eeCC-CCCcc
Q 009781 81 AKYVPFNAGPSCTESYSLDEVV---YRSQ-SGGLL 111 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~~---~~c~-cGGll 111 (526)
=||-- +.|..|.+.|+++++. |+|| |||-+
T Consensus 242 GKY~~-TAC~rC~t~y~le~A~~~~wrCpkCGg~i 275 (403)
T COG1379 242 GKYHL-TACSRCYTRYSLEEAKSLRWRCPKCGGKI 275 (403)
T ss_pred cchhH-HHHHHhhhccCcchhhhhcccCcccccch
Confidence 34443 5688999999998764 7896 99943
No 134
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=43.11 E-value=14 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=17.5
Q ss_pred CCCCCCCcccCCCceeeCC-CCCc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGL 110 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGl 110 (526)
.|+.||..+.-++....|| ||..
T Consensus 4 ~C~~CG~i~~g~~~p~~CP~Cg~~ 27 (34)
T cd00729 4 VCPVCGYIHEGEEAPEKCPICGAP 27 (34)
T ss_pred ECCCCCCEeECCcCCCcCcCCCCc
Confidence 4899999887666677896 7754
No 135
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=41.99 E-value=3.3e+02 Score=28.61 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=24.7
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC
Q 009781 269 ANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS 302 (526)
Q Consensus 269 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 302 (526)
..|.+|+.|.... ...+.+++.+++-+.+++|.
T Consensus 57 ~~gg~iLfVgTk~-~~~~~V~~~A~~~g~~yV~~ 89 (326)
T PRK12311 57 AKGGRVLFVGTKR-QAQDAVADAAKRSAQYFVNS 89 (326)
T ss_pred hCCCEEEEEeCcH-HHHHHHHHHHHHhCCeeeCC
Confidence 4688888887665 57788888888877766664
No 136
>PRK07109 short chain dehydrogenase; Provisional
Probab=41.92 E-value=1e+02 Score=31.84 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=43.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..||--|.+++....+.|.+++++.-....-.....++...|+++..+..| .++..+.+.++.++
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57888888888999998888889887766532110111123355678887666554 44455555555444
No 137
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.57 E-value=12 Score=33.35 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=15.3
Q ss_pred CCCCCCCcccCCCc-------eeeCC-CCCc
Q 009781 88 AGPSCTESYSLDEV-------VYRSQ-SGGL 110 (526)
Q Consensus 88 ~t~~cg~~~~~~~~-------~~~c~-cGGl 110 (526)
+| .||.+++.++. .+.|| ||+.
T Consensus 72 ~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~ 101 (124)
T PRK00762 72 EC-ECGYEGVVDEDEIDHYAAVIECPVCGNK 101 (124)
T ss_pred Ee-eCcCcccccccchhccccCCcCcCCCCC
Confidence 49 99999876521 25796 8864
No 138
>PRK06182 short chain dehydrogenase; Validated
Probab=41.25 E-value=1.9e+02 Score=28.39 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=44.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLD-TDFDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.+++......|.+++++.-. ..++..+...+++++.+| .+.++..+.++++.++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~----~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR----VDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 57888888889999998878889887766432 234444555677777766 3455556666665544
No 139
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=40.96 E-value=17 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=17.1
Q ss_pred CCCCCCcccCCCc-------eeeCC-CCCcce
Q 009781 89 GPSCTESYSLDEV-------VYRSQ-SGGLLD 112 (526)
Q Consensus 89 t~~cg~~~~~~~~-------~~~c~-cGGll~ 112 (526)
|+.|+..|..++. ..+|+ |+-.|.
T Consensus 5 CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 5 CPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred CCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 8999988877655 45674 776653
No 140
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=40.32 E-value=9 Score=32.93 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=17.8
Q ss_pred CCCCCCCcccC-CCceee-CC-CCCcc
Q 009781 88 AGPSCTESYSL-DEVVYR-SQ-SGGLL 111 (526)
Q Consensus 88 ~t~~cg~~~~~-~~~~~~-c~-cGGll 111 (526)
.|.+||..|+- ++.+++ || ||+-+
T Consensus 4 ~CtrCG~vf~~g~~~il~GCp~CG~nk 30 (112)
T COG3364 4 QCTRCGEVFDDGSEEILSGCPKCGCNK 30 (112)
T ss_pred eecccccccccccHHHHccCccccchh
Confidence 59999999986 444555 85 88865
No 141
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=40.28 E-value=18 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=20.9
Q ss_pred ceeeccCCCCCCCCCcccCC--CceeeCC-CCCccee
Q 009781 80 SAKYVPFNAGPSCTESYSLD--EVVYRSQ-SGGLLDV 113 (526)
Q Consensus 80 ~~~y~s~~~t~~cg~~~~~~--~~~~~c~-cGGll~v 113 (526)
+|.|+ |..||+.++.. ....+|+ ||.=..+
T Consensus 4 ~~~Y~----C~~Cg~~~~~~~~~~~irCp~Cg~rIl~ 36 (49)
T COG1996 4 MMEYK----CARCGREVELDQETRGIRCPYCGSRILV 36 (49)
T ss_pred eEEEE----hhhcCCeeehhhccCceeCCCCCcEEEE
Confidence 56665 89999999743 3356897 8875543
No 142
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.00 E-value=1.3e+02 Score=29.08 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=40.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|.-|.+++..-.+.|.+++++.-.. ....+ ..++...|.++..+..| .++..+.++++.++
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQ-AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 568888888889999877778899876664221 11111 12344566666555433 44445555555443
No 143
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.99 E-value=19 Score=23.22 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=15.9
Q ss_pred CCCCCCCcccCCCceeeCC-CCCcc
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLL 111 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll 111 (526)
.|+.|+.+++. ..-.|+ ||-.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 58999999984 444686 77554
No 144
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=39.99 E-value=1.4e+02 Score=29.44 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=35.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 280 (526)
..+|+..+|..|.+++..-.+.|.+++++.-.......-..++..+|.++..+..|
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56888888889999998777889987776543210111122344566666555544
No 145
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=39.39 E-value=1.2e+02 Score=31.37 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHhcCCCEEEEcCCCc-CCHHhHHhHHhCCCEEEEEC
Q 009781 233 GDTSAALSAYCASAGVPSIVFLPANK-ISIAQLVQPIANGAFVLSLD 278 (526)
Q Consensus 233 GN~g~AlAa~aa~~Gi~~~V~vP~~~-~s~~k~~q~~~~GA~Vi~v~ 278 (526)
+|.+.|+...++++|++++++-|++- .++.-+.++..+|++|...+
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 58899999999999999999999973 44433455666788886543
No 146
>PRK12743 oxidoreductase; Provisional
Probab=39.18 E-value=1.4e+02 Score=29.07 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=44.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcC-CHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKI-SIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|.-|.+++......|.+++++...+.. ...-..++..+|.++..+..| .++..+.+.++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888889999998888889988777643311 111223455678776555543 44455555555444
No 147
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=38.85 E-value=2.6e+02 Score=30.27 Aligned_cols=137 Identities=22% Similarity=0.260 Sum_probs=77.6
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchH--HHH--HHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCC
Q 009781 196 ISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDT--SAA--LSAYCASAGVPSIVFLPANKISIAQLVQPIANG 271 (526)
Q Consensus 196 ~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~--g~A--lAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~G 271 (526)
.+|||-=|--..+-+..+.... .+++..+++ |+-|+ |+. |-.||..+|+++.++.+.... ...+.++..+
T Consensus 209 VGPTGVGKTTTlAKLAar~~~~--~~~~kVaiI--TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el-~~ai~~l~~~- 282 (407)
T COG1419 209 VGPTGVGKTTTLAKLAARYVML--KKKKKVAII--TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKEL-AEAIEALRDC- 282 (407)
T ss_pred ECCCCCcHHHHHHHHHHHHHhh--ccCcceEEE--EeccchhhHHHHHHHHHHHhCCceEEecCHHHH-HHHHHHhhcC-
Confidence 3899999988877666655422 222223444 65566 443 469999999999999865311 2233344444
Q ss_pred CEEEEECC---CHHHHHH--HHHHHHhc---CCeeeccCCchhHHhHHHHHHHHHHHHcCCCCCcEEEEe----CCchhH
Q 009781 272 AFVLSLDT---DFDGCMQ--LIREVTSE---LPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVP----GGNLGN 339 (526)
Q Consensus 272 A~Vi~v~g---~~dd~~~--~~~~~~~~---~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP----~G~Gg~ 339 (526)
+++.||. ++-|.+. ..+++... ...|.+=+ .-.+..--.||++|+..-.++.+++. +.+-|+
T Consensus 283 -d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvls-----at~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~ 356 (407)
T COG1419 283 -DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLS-----ATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGN 356 (407)
T ss_pred -CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEe-----cCcchHHHHHHHHHhccCCcceeEEEcccccCchhH
Confidence 8999984 2222221 22222221 11111111 11233356789999876567888887 666666
Q ss_pred HHHHH
Q 009781 340 IYAFY 344 (526)
Q Consensus 340 l~G~~ 344 (526)
+..+.
T Consensus 357 ~~s~~ 361 (407)
T COG1419 357 LFSLM 361 (407)
T ss_pred HHHHH
Confidence 66654
No 148
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.61 E-value=19 Score=22.39 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=14.4
Q ss_pred CCCCCCCcccCCCceeeC-CCCCc
Q 009781 88 AGPSCTESYSLDEVVYRS-QSGGL 110 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c-~cGGl 110 (526)
.|+.||.+++. +..+ | .||-.
T Consensus 1 ~Cp~CG~~~~~-~~~f-C~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-DAKF-CPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-cCcc-hhhhCCc
Confidence 48899999973 3443 6 48754
No 149
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.00 E-value=3.5e+02 Score=25.52 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=34.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCCH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTDF 281 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~~ 281 (526)
..+|+..||..|.+++....+.|.+++++.-.......+ ...+...+.++..+..|.
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 64 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDV 64 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCC
Confidence 578888889999999977777898876665322101111 112334566666665443
No 150
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=37.64 E-value=1.6e+02 Score=28.81 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=41.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
...+|+..+|..|.+++......|.+++++--...........+...|.++..+..| .++..+.+.++.++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 367888888999999998888889987766322100011122344567776555543 34444555554433
No 151
>PRK07454 short chain dehydrogenase; Provisional
Probab=37.32 E-value=1.5e+02 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|..|.+++-...+.|.+++++.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567888889999999988888899877765
No 152
>PRK06194 hypothetical protein; Provisional
Probab=37.26 E-value=1.8e+02 Score=28.81 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=41.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|.-|.+++-...+.|.+++++--...........+...|.++..+.+| .+++.+.+.++.+
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56888888889999998778889887665422100011122344457777666665 3445555555433
No 153
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=36.20 E-value=1.8e+02 Score=28.30 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC---CHHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT---DFDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~ 294 (526)
..+|+..+|.-|.+++......|.+++++--.. .......++...|.++..+.. +.++..+.++++.++
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 578888888899999988888898877664321 111122334456777654443 344455555555443
No 154
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.13 E-value=2.7e+02 Score=26.91 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLD-TDFDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.++|..-...|.+++++.-.. ..+...+...+...+.+| .+.++..+.++++.++
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~---~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA---ENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 578888888899999977778898877654332 223444444566666665 3455556666665443
No 155
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=35.72 E-value=4.7e+02 Score=27.11 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=26.5
Q ss_pred eEEEEeccchHH--HHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHh-CCCEEEEECC
Q 009781 225 IGVGCASTGDTS--AALSAYCASAGVPSIVFLPANKISIAQLVQPIA-NGAFVLSLDT 279 (526)
Q Consensus 225 ~~Vv~aSSGN~g--~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~-~GA~Vi~v~g 279 (526)
..|+.+.|||+- ...+..+++.|.+++++...+ ++.++.. .|..++.+++
T Consensus 81 lvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~-----~L~~~a~~~~~~~i~ip~ 133 (337)
T PRK08674 81 LVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGG-----KLKEMAKEHGLPVIIVPG 133 (337)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCc-----hHHHHHHhcCCeEEEeCC
Confidence 445556667773 344556666777666665422 1333322 2666666554
No 156
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=35.52 E-value=24 Score=30.77 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=18.8
Q ss_pred CCCCCCCCcccCC-CceeeCC-CCCcc
Q 009781 87 NAGPSCTESYSLD-EVVYRSQ-SGGLL 111 (526)
Q Consensus 87 ~~t~~cg~~~~~~-~~~~~c~-cGGll 111 (526)
++|+.|+.+|..+ ...|-|| ||.-+
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW 29 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEW 29 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccc
Confidence 5799999988874 4567796 77654
No 157
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=35.37 E-value=2.6e+02 Score=27.07 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=35.5
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 280 (526)
...+|+..+|.-|.++|..-.+.|.+++++-.. .......++...|.++..+..|
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV--EPTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCc--chHHHHHHHHhcCCeEEEEECC
Confidence 367888888999999998888889887655222 1222334455556665545433
No 158
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=34.89 E-value=75 Score=30.75 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=47.4
Q ss_pred eEEEeCHHH-HHHHHHH-HHhcCCeecc-hHHHHHHHHHHHHHcCCC--------------------CCCCeEEEEECCC
Q 009781 418 IVEEATEEE-LMDVSAQ-ADSTGMFVCP-HTGVALSALIKLRCKGVI--------------------GKTDKTVVVSTAH 474 (526)
Q Consensus 418 ~~v~Vsd~e-i~~A~~~-l~~~Gi~veP-~sA~alAal~~l~~~g~i--------------------~~~~~vVvv~TG~ 474 (526)
.++.|+|++ +.++..+ +...|+-+.. +++..+-+.....+.|.+ .....-|+++|||
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGh 85 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGH 85 (202)
T ss_pred eEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCC
Confidence 345565554 4566665 4778888877 555555443211111110 0122348889999
Q ss_pred CCCchHHHHhhhcchhhHHHhhhcCCCcccCCCHHHHHHHHH
Q 009781 475 GLKFTQSKIDYHSQNIKDMACRLANPPVSVKADFGSVMDVLK 516 (526)
Q Consensus 475 g~K~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 516 (526)
|.- +.++..+..+. -.|...|..-..-+++|+..+.
T Consensus 86 gDI-pmaV~AmK~GA-----vDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 86 GDI-PMAVQAMKAGA-----VDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred CCh-HHHHHHHHcch-----hhHHhCCCchHHHHHHHHHHHH
Confidence 854 66655554432 2344444443344555554444
No 159
>PRK09072 short chain dehydrogenase; Provisional
Probab=34.80 E-value=4.3e+02 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=24.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|-.|.+++......|.+++++.
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 577888888889999977778898876665
No 160
>PRK08628 short chain dehydrogenase; Provisional
Probab=34.47 E-value=2.6e+02 Score=27.02 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCH---HHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDF---DGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~---dd~~~~~~~~~~ 293 (526)
..+|+..+|-.|.++|..-.+.|.+++++.-.. ....-..++...|.++..+..|. ++..+...++.+
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA-PDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh-hhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 568888888899999988888899987775332 11222334555676665555543 334444444443
No 161
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=34.00 E-value=2.6e+02 Score=30.88 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=30.2
Q ss_pred eEEEEec-cchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEEC
Q 009781 225 IGVGCAS-TGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLD 278 (526)
Q Consensus 225 ~~Vv~aS-SGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~ 278 (526)
+.|++.| ||.++..+|.| |..++++++.|... .....-..+|+.-+.++
T Consensus 375 kaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~~---v~R~L~L~wGV~Pil~~ 424 (473)
T TIGR01064 375 KAIVVLTESGRTARLLSKY--RPNAPIIAVTPNER---VARQLALYWGVFPFLVD 424 (473)
T ss_pred CEEEEEcCChHHHHHHHhh--CCCCCEEEEcCCHH---HHHHhhccCCcEEEEeC
Confidence 4455544 78888877766 56678888888642 11222335787776665
No 162
>PRK07035 short chain dehydrogenase; Provisional
Probab=33.92 E-value=2.1e+02 Score=27.56 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
..+|+..+|.-|.+++....+.|.+++++.-
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5788888888999999887888988776643
No 163
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.91 E-value=1.8e+02 Score=25.92 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=42.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhH----HhHHhCCCEEEEECC---CHHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQL----VQPIANGAFVLSLDT---DFDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~----~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~ 293 (526)
..+|+..++.-|.++|..-.+.|-..++++..+ .+..+. ..+...|.++..+.. +.+++.+.++++.+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIK 76 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-cccccccccccccccccccccccccccccccccccccccccc
Confidence 457888888999999866666677666666543 112222 234567888776664 35555666666553
No 164
>PRK07814 short chain dehydrogenase; Provisional
Probab=33.62 E-value=4.4e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=23.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|--|.+++-.-...|.+++++.
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578888888889999877777898776664
No 165
>PRK08643 acetoin reductase; Validated
Probab=33.54 E-value=2.1e+02 Score=27.70 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=39.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhH-HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQL-VQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|..|.+++.+..+.|.+++++.-.. ....+. ..+...|.++..+..| .+...+..+++.+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE-ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567888888899999987788898766654221 111111 2234456666555544 3344445555443
No 166
>PRK05867 short chain dehydrogenase; Provisional
Probab=33.51 E-value=2e+02 Score=27.82 Aligned_cols=30 Identities=7% Similarity=0.023 Sum_probs=23.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|.-|.+++..-.+.|.+++++.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 40 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAA 40 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578888888889999977778898866653
No 167
>PRK06128 oxidoreductase; Provisional
Probab=33.12 E-value=2e+02 Score=28.97 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=43.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCC-CcCC-HHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPA-NKIS-IAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~-~~~s-~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.++|..-.+.|.++++..-. .... ......+...|.++..+..| .+++.+++.++.+.
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 67888888899999997778889988776532 1111 11223345667777666544 44455555555443
No 168
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=32.39 E-value=4.3e+02 Score=28.54 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=32.6
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHhcC----CCceEEEEeccchHHHH--HHHHHHhcCCCEEEEc
Q 009781 195 GISHTGSFKDLGMTVLVSQVNRLKRMN----KPVIGVGCASTGDTSAA--LSAYCASAGVPSIVFL 254 (526)
Q Consensus 195 ~~nPTGSFKDRga~~~v~~a~~~~~~g----~~~~~Vv~aSSGN~g~A--lAa~aa~~Gi~~~V~v 254 (526)
.-+|.| +..+...+..+.++.| .+...+|+..|+..|.| +|... ..|.+++++.
T Consensus 14 ~~hp~g-----c~~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVG-----CEANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHH-----HHHHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 447888 4444455555544433 22466777777777777 55555 7888866664
No 169
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.14 E-value=3.3e+02 Score=28.20 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=50.1
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCC-CEEEEEC-CCHHHHHHHHHHHHhcCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANG-AFVLSLD-TDFDGCMQLIREVTSELP 296 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~G-A~Vi~v~-g~~dd~~~~~~~~~~~~~ 296 (526)
...+++..++-.|.++|.--++.|-+++++==....-.+...+++..| |+-+.++ ++++|..+.++++-++.|
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 356777776677999998878888755444211122355666677667 5557777 578888888888887765
No 170
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=32.12 E-value=5.4e+02 Score=27.73 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=33.7
Q ss_pred EEEeccc-hHHHHHHHHHHhcCCCEEEEcCC-CcC--CHHhHH-hHHhCCC-EEEEECCCH
Q 009781 227 VGCASTG-DTSAALSAYCASAGVPSIVFLPA-NKI--SIAQLV-QPIANGA-FVLSLDTDF 281 (526)
Q Consensus 227 Vv~aSSG-N~g~AlAa~aa~~Gi~~~V~vP~-~~~--s~~k~~-q~~~~GA-~Vi~v~g~~ 281 (526)
|+.+|.| ||...+.+...+.+.+++.|.-. +.. +...+. .....|| +++.+|..-
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ 61 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARD 61 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HH
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHH
Confidence 4567766 88888899999888998888733 211 222222 2457899 999888643
No 171
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.05 E-value=50 Score=36.66 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=57.6
Q ss_pred cccCCCceecccccccccCCCcEEEEecCCCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhc
Q 009781 167 FEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASA 246 (526)
Q Consensus 167 ~eG~TPL~~~~~l~~~~lg~~~l~lK~E~~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 246 (526)
..|.|||.-.++ ++. +|+ +|+|+.-. .-.|.| ..++++.| .++|.+ ||+.-.-.|+.|+.+
T Consensus 424 ~~GGTPL~V~~~-~~~-~GV--I~LkDivK---~Gi~ER--------f~elR~Mg--IkTvM~--TGDN~~TAa~IA~EA 484 (681)
T COG2216 424 RLGGTPLVVVEN-GRI-LGV--IYLKDIVK---PGIKER--------FAELRKMG--IKTVMI--TGDNPLTAAAIAAEA 484 (681)
T ss_pred hcCCCceEEEEC-CEE-EEE--EEehhhcc---hhHHHH--------HHHHHhcC--CeEEEE--eCCCHHHHHHHHHHh
Confidence 358999987654 222 676 89988722 335555 34566777 567764 477766778888999
Q ss_pred CCCEEEEcCCCcCCHHhHHhHHh--CCCEEEEECCC
Q 009781 247 GVPSIVFLPANKISIAQLVQPIA--NGAFVLSLDTD 280 (526)
Q Consensus 247 Gi~~~V~vP~~~~s~~k~~q~~~--~GA~Vi~v~g~ 280 (526)
|++-++- + ..++.|+..++. .+.+++...||
T Consensus 485 GVDdfiA--e-atPEdK~~~I~~eQ~~grlVAMtGD 517 (681)
T COG2216 485 GVDDFIA--E-ATPEDKLALIRQEQAEGRLVAMTGD 517 (681)
T ss_pred Cchhhhh--c-CChHHHHHHHHHHHhcCcEEEEcCC
Confidence 9886543 2 235556666553 35556555544
No 172
>PRK06483 dihydromonapterin reductase; Provisional
Probab=32.05 E-value=3.2e+02 Score=26.00 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=38.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLD-TDFDGCMQLIRE 290 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~ 290 (526)
..+|+..+|--|.++|..-...|.+++++--.. . .....+...|++.+.+| .+.++..+.+.+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 67 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--Y-PAIDGLRQAGAQCIQADFSTNAGIMAFIDE 67 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--h-hHHHHHHHcCCEEEEcCCCCHHHHHHHHHH
Confidence 567888888899999987778898877764321 1 12333445566655555 233333333333
No 173
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=31.81 E-value=3.4e+02 Score=26.41 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=24.2
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
...+|+..||.-|.+++-...+.|.+++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 357888888889999997778889987665
No 174
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.71 E-value=2.5e+02 Score=26.78 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=24.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|..|.+++......|.+++++.
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567888888999999987778898766654
No 175
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=31.52 E-value=2.3e+02 Score=27.26 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=41.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|..|.+++......|.+++++.-...........+...|.++..+..| .++..+.+.++.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35778888999999998778889876555422110111123345667776555544 44445555555443
No 176
>PRK07774 short chain dehydrogenase; Provisional
Probab=31.50 E-value=3.2e+02 Score=26.12 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=24.5
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|--|.+++......|.+++++.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~ 37 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVAD 37 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578888889999999987777898877664
No 177
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.32 E-value=4.6e+02 Score=24.81 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=24.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
..+|+..+|..|.+++......|.++++++-
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~ 37 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYD 37 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5678888899999998766777998877743
No 178
>PRK06172 short chain dehydrogenase; Provisional
Probab=31.15 E-value=2.2e+02 Score=27.43 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=34.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 280 (526)
...+|+..+|.-|.+++....+.|.+++++.=..........++...|.++..+..|
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACD 64 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 356888888999999998778889886665421110111223345566666555443
No 179
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.09 E-value=1.6e+02 Score=28.59 Aligned_cols=83 Identities=10% Similarity=0.072 Sum_probs=50.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-CchhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHH
Q 009781 271 GAFVLSLDTDFDGCMQLIREVTSELPIYLANS-LNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQM 349 (526)
Q Consensus 271 GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~ 349 (526)
|.+|+.|.... .+++.+++.++.-+.++++. +-|..+--+.+ -....||.++|- .-.....++- |
T Consensus 61 ~~~ILfVgtk~-~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~--------~~~~~Pdlliv~-dp~~~~~Av~----E 126 (196)
T TIGR01012 61 PEDILVVSARI-YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ--------KAFREPEVVVVT-DPRADHQALK----E 126 (196)
T ss_pred CCeEEEEecCH-HHHHHHHHHHHHhCCceECCeeCCCCCCCccc--------cccCCCCEEEEE-CCccccHHHH----H
Confidence 77777776554 46777888887766555543 22211111111 112479988874 4455555554 8
Q ss_pred HHHcCCCCCCCeEEEEecCCCch
Q 009781 350 CKELGLVDRIPRLVCAQAANANP 372 (526)
Q Consensus 350 l~~~Gl~~~~prvi~Vq~~~~~~ 372 (526)
+.++|+ | +||+...+|+|
T Consensus 127 A~~l~I--P---~Iai~DTn~dp 144 (196)
T TIGR01012 127 ASEVGI--P---IVALCDTDNPL 144 (196)
T ss_pred HHHcCC--C---EEEEeeCCCCC
Confidence 999986 3 78888878764
No 180
>PRK08589 short chain dehydrogenase; Validated
Probab=31.09 E-value=2.3e+02 Score=27.98 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=41.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.++|..-...|.+++++.-.. ........+...|.++..+..| .++..+.+.++.++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAE-AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH-HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 578888888889999977777899887775331 1111223344566665444433 44455555555544
No 181
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=30.87 E-value=1.6e+02 Score=31.30 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=47.7
Q ss_pred HHhCC-CEEEEECCCHH---HHHHHHHHHHhcCCeeecc-CCchhHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHH
Q 009781 267 PIANG-AFVLSLDTDFD---GCMQLIREVTSELPIYLAN-SLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIY 341 (526)
Q Consensus 267 ~~~~G-A~Vi~v~g~~d---d~~~~~~~~~~~~~~~~~n-s~Np~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~ 341 (526)
+..+| .++..|+.||- ++.++++++.++.|.-.+. .+=|+.-.-...+.-+|.+. .|| ||+.+-.|....
T Consensus 129 ~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~----~Pd-~V~stlvG~s~~ 203 (363)
T PF13433_consen 129 LENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAA----KPD-FVFSTLVGDSNV 203 (363)
T ss_dssp HHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHH----T-S-EEEEE--TTCHH
T ss_pred HhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhh----CCC-EEEEeCcCCcHH
Confidence 34689 99999999863 6778888888777643332 23454333333444455433 689 556666778888
Q ss_pred HHHHHHHHHHHcCCC
Q 009781 342 AFYKGFQMCKELGLV 356 (526)
Q Consensus 342 G~~kgf~~l~~~Gl~ 356 (526)
++++.++ +.|+-
T Consensus 204 aF~r~~~---~aG~~ 215 (363)
T PF13433_consen 204 AFYRAYA---AAGLD 215 (363)
T ss_dssp HHHHHHH---HHH-S
T ss_pred HHHHHHH---HcCCC
Confidence 9998655 45763
No 182
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=30.76 E-value=60 Score=24.70 Aligned_cols=23 Identities=30% Similarity=0.762 Sum_probs=17.4
Q ss_pred CCCCCCcccCCCceeeC-CCCCcceecc
Q 009781 89 GPSCTESYSLDEVVYRS-QSGGLLDVQH 115 (526)
Q Consensus 89 t~~cg~~~~~~~~~~~c-~cGGll~v~~ 115 (526)
|.+|+ .|++.+ .| +||+...+++
T Consensus 8 c~~~~-~YTLk~---~cp~cG~~T~~ah 31 (53)
T PF04135_consen 8 CPGCR-VYTLKD---KCPPCGGPTESAH 31 (53)
T ss_dssp CTTTC-EEESSS---BBTTTSSBSEESS
T ss_pred CCCCC-cEeCCC---ccCCCCCCCcCCc
Confidence 88887 677764 68 5999987665
No 183
>PRK10220 hypothetical protein; Provisional
Probab=30.63 E-value=34 Score=29.89 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=19.0
Q ss_pred CCCCCCCCcccCC-CceeeCC-CCCcc
Q 009781 87 NAGPSCTESYSLD-EVVYRSQ-SGGLL 111 (526)
Q Consensus 87 ~~t~~cg~~~~~~-~~~~~c~-cGGll 111 (526)
+.|+.|+.+|..+ ...|-|| ||.=+
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW 30 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEW 30 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcC
Confidence 5699999988875 4567896 77655
No 184
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=30.42 E-value=3.6e+02 Score=25.02 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=41.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCC-cC---CHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhcC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPAN-KI---SIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSEL 295 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~-~~---s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~~ 295 (526)
..+|+.-+|..|..++-+-...|-.-+|++... .. ....+..++..|++|..+..| .++..+.+.++.++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 357777788999999855555555545555332 11 123455677889999777644 556666666655554
No 185
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=30.26 E-value=3.3e+02 Score=26.08 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=39.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREV 291 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~ 291 (526)
...+|+..+|.-|.++|-.....|.+++++.-.. ......++...+.++..+..| .++..+.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSA 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 3578888888889999988888898877665321 122233345566665555544 33334444444
No 186
>PRK06720 hypothetical protein; Provisional
Probab=30.05 E-value=2.9e+02 Score=25.65 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=23.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
..+++..+|--|.+++..-...|.+++++..
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r 48 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDI 48 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 5677777777899998777778888776653
No 187
>PRK08017 oxidoreductase; Provisional
Probab=29.95 E-value=3.3e+02 Score=26.18 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=40.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT-DFDGCMQLIREV 291 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~ 291 (526)
..+|+..+|.-|.+++..-...|.+++++... ..++..+...|++.+.++- +.++..+...++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 67 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK----PDDVARMNSLGFTGILLDLDDPESVERAADEV 67 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHhHHHHhCCCeEEEeecCCHHHHHHHHHHH
Confidence 46788888999999998777889887655332 2344455566877776653 334444444443
No 188
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.84 E-value=2.5e+02 Score=26.79 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=23.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|.-|.+++......|.+++++.
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567778888899999987787898765554
No 189
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.51 E-value=2.1e+02 Score=27.84 Aligned_cols=30 Identities=10% Similarity=-0.085 Sum_probs=22.6
Q ss_pred eEEEEecc--chHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCAST--GDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSS--GN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+ +.-|.++|..-.+.|.++++..
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 45666665 5789999977788899877664
No 190
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.45 E-value=1.9e+02 Score=29.88 Aligned_cols=69 Identities=20% Similarity=0.116 Sum_probs=41.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..||--|.++|...++.|.+++++.-.. ....+ ...+...|+++..+..| .++..+.+.++.+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~-~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDE-EALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 567888888889999988888899876654221 11111 22355678877555443 44445555554433
No 191
>PRK09291 short chain dehydrogenase; Provisional
Probab=29.42 E-value=1.5e+02 Score=28.70 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=36.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHH-hHHhCCCEEEEECCCHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLV-QPIANGAFVLSLDTDFDGC 284 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~-q~~~~GA~Vi~v~g~~dd~ 284 (526)
..+|+..||..|.+++......|.+++++.-.. ....++. .....|.++..+.+|..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~ 63 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIA-PQVTALRAEAARRGLALRVEKLDLTDA 63 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCcceEEEeeCCCH
Confidence 568888889999999988888898887765432 1111111 2234555565555555443
No 192
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=29.32 E-value=23 Score=33.68 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=18.0
Q ss_pred CCCCCCCcccCCCceeeCC-CCCccee
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SGGLLDV 113 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cGGll~v 113 (526)
+|.+|++.|+ ...-.|| |||.+..
T Consensus 141 rC~GC~~~f~--~~~~~Cp~CG~~~~~ 165 (177)
T COG1439 141 RCHGCKRIFP--EPKDFCPICGSPLKR 165 (177)
T ss_pred EEecCceecC--CCCCcCCCCCCceEE
Confidence 5999999998 3333585 9999753
No 193
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=29.30 E-value=2.6e+02 Score=26.78 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=42.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcC-CHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKI-SIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..||.-|.++|-...+.|.+++++.-.+.. ....+.++...|.++..+..| .++..+.+.++.+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56888888999999998888889887665422211 111233445668777655544 4444444544433
No 194
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=29.22 E-value=4.7e+02 Score=26.03 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=33.5
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEE
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVL 275 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 275 (526)
...+|...+|..|.++...|+..|.+++++.. ++.+...+..+|++.+
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~~g~~~~ 189 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTS----SEEKVDFCKKLAAIIL 189 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHcCCcEE
Confidence 34555556789999999999999998766443 2345555667888543
No 195
>PRK05876 short chain dehydrogenase; Provisional
Probab=29.16 E-value=2.6e+02 Score=27.74 Aligned_cols=70 Identities=14% Similarity=-0.049 Sum_probs=40.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.++|..-.+.|.+++++.-....-......+...|.++..+..| .++..+.+.++.++
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 57888888888999998778889986655321100011122344567766555443 44555555555443
No 196
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.92 E-value=2.4e+02 Score=28.43 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=38.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTD---FDGCMQLIREVT 292 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~ 292 (526)
..+|+..+|.-|.++|......|.+++++.-... ...+ ..++...|.++..+..| .++..+.++++.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~-~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRED-LLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4678888888899999777788988776653310 1111 12233456665545443 333444444443
No 197
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=28.91 E-value=37 Score=25.45 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=8.7
Q ss_pred CCCCCCCcccCC
Q 009781 88 AGPSCTESYSLD 99 (526)
Q Consensus 88 ~t~~cg~~~~~~ 99 (526)
.|+.||..|+.+
T Consensus 3 ~C~~CgyiYd~~ 14 (50)
T cd00730 3 ECRICGYIYDPA 14 (50)
T ss_pred CCCCCCeEECCC
Confidence 478888888753
No 198
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.55 E-value=5.1e+02 Score=24.62 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=54.4
Q ss_pred hHHhCCCEEEEEC--CCHHHHHHHHHHHHhcC-----C--eeec--cC-Cc--hhHHhHHHHHHHHHHHHcCCCCCcEEE
Q 009781 266 QPIANGAFVLSLD--TDFDGCMQLIREVTSEL-----P--IYLA--NS-LN--SLRLEGQKTAAIEILQQFDWEVPDWVI 331 (526)
Q Consensus 266 q~~~~GA~Vi~v~--g~~dd~~~~~~~~~~~~-----~--~~~~--ns-~N--p~~i~G~~T~a~EI~eQl~~~~pd~Vv 331 (526)
+....|.+|+.++ |+.-|+|-.+.|+..++ + .... ++ .. ...=-|+.++.-.=++.++ .|--|+
T Consensus 36 ~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g--~~GDvL 113 (176)
T COG0279 36 QSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG--QPGDVL 113 (176)
T ss_pred HHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC--CCCCEE
Confidence 3446799999886 67889999998875432 1 1111 21 00 0111234444444445555 344344
Q ss_pred EeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Q 009781 332 VPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAAN 369 (526)
Q Consensus 332 VP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~ 369 (526)
+...+-|+---+.++++.++++|. ++|+-.-.+
T Consensus 114 igISTSGNS~nVl~Ai~~Ak~~gm-----~vI~ltG~~ 146 (176)
T COG0279 114 IGISTSGNSKNVLKAIEAAKEKGM-----TVIALTGKD 146 (176)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCC-----EEEEEecCC
Confidence 544434444455677778888886 677765443
No 199
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=28.54 E-value=5.5e+02 Score=29.17 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=26.5
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
...+|+..+|..|.+++....+.|.++++++-
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46788888899999999888888999887753
No 200
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=28.42 E-value=3.1e+02 Score=26.46 Aligned_cols=30 Identities=17% Similarity=-0.073 Sum_probs=23.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|.-|.+++..-.+.|.+++++.
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~ 40 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIIND 40 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 578888889999999977778898766543
No 201
>PRK08862 short chain dehydrogenase; Provisional
Probab=28.38 E-value=2.7e+02 Score=26.89 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=22.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
..+|+..|+.-|.++|...++.|.+++++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILC 35 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 56777777777999998778889886654
No 202
>PRK06949 short chain dehydrogenase; Provisional
Probab=27.97 E-value=2.6e+02 Score=26.97 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=25.6
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
...+|+..+|.-|.+++....+.|.+++++.-
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888899999999888888998666643
No 203
>PRK08226 short chain dehydrogenase; Provisional
Probab=27.91 E-value=3.1e+02 Score=26.59 Aligned_cols=69 Identities=9% Similarity=0.005 Sum_probs=40.5
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
...+|+..+|.-|.+++......|.+++++--... .......+...|.++..+..| .++..+.+.++.+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 35788888899999999777778998766643221 111223344456666544443 3344445555443
No 204
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=27.91 E-value=87 Score=28.30 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=66.6
Q ss_pred EEEeccchHHHHHHHHHHhcCCCE-EEEcCCCc-CCHHhH---HhHH-hCCCEEEEECCCHHHHHHHHHHHHhcCCeeec
Q 009781 227 VGCASTGDTSAALSAYCASAGVPS-IVFLPANK-ISIAQL---VQPI-ANGAFVLSLDTDFDGCMQLIREVTSELPIYLA 300 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~-~V~vP~~~-~s~~k~---~q~~-~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ 300 (526)
.+...+|+-|.++|......++-- ++++..+. ....+. .++. ..+..+....++++++. +-.+...
T Consensus 4 ~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--------~aDivvi 75 (141)
T PF00056_consen 4 AIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK--------DADIVVI 75 (141)
T ss_dssp EEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT--------TESEEEE
T ss_pred EEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc--------cccEEEE
Confidence 445666999999998888888743 55555431 111111 1222 23445555557776542 1111111
Q ss_pred c---CCch-----hHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEE
Q 009781 301 N---SLNS-----LRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVC 364 (526)
Q Consensus 301 n---s~Np-----~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~ 364 (526)
- +..| ..++....+..|+.+++....|+.+++-++|=-++..-+ ..+..|+ +..|++|
T Consensus 76 tag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~--~~~kviG 141 (141)
T PF00056_consen 76 TAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGF--PPNKVIG 141 (141)
T ss_dssp TTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTS--SGGGEEE
T ss_pred eccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCc--CcccCcC
Confidence 1 1122 123344446677777665445888877777777765544 3455666 4457775
No 205
>PRK06181 short chain dehydrogenase; Provisional
Probab=27.76 E-value=2.7e+02 Score=26.99 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=40.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|..|.+++-.....|.+++++.............+...|.++..+..| .+...+...++.+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45778888899999997777889887776543210111122344556666555443 3444445555443
No 206
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.49 E-value=3.1e+02 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=24.9
Q ss_pred EeccchHHHHHHHHHHhcCCCEEEEcCCC
Q 009781 229 CASTGDTSAALSAYCASAGVPSIVFLPAN 257 (526)
Q Consensus 229 ~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~ 257 (526)
.--+|..|.-+|.+.+..|.+++++...+
T Consensus 4 ViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 4 VIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 33559999999999999999999998765
No 207
>CHL00067 rps2 ribosomal protein S2
Probab=27.43 E-value=6.1e+02 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=22.4
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCeeecc
Q 009781 269 ANGAFVLSLDTDFDGCMQLIREVTSELPIYLAN 301 (526)
Q Consensus 269 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n 301 (526)
..|.+|..|.... ...+.+++.++..+.++++
T Consensus 66 ~~~g~ILfV~t~~-~~~~~v~~~a~~~~~~yv~ 97 (230)
T CHL00067 66 SKGKKFLFVGTKK-QAADLVASAAIRARCHYVN 97 (230)
T ss_pred hCCCeEEEEeCcH-HHHHHHHHHHHHhCCcCcc
Confidence 4688888887664 4677777777776656555
No 208
>PLN02192 3-ketoacyl-CoA synthase
Probab=27.28 E-value=1e+02 Score=34.41 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=45.5
Q ss_pred EeCHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhhc
Q 009781 421 EATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYHS 487 (526)
Q Consensus 421 ~Vsd~ei~~A~~~l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~~ 487 (526)
.+++++.-....-+++.|-. +|+.-+.++..+.++|.+.++++++.+..|+|+|.-..+.++..
T Consensus 420 gL~~~~~e~sr~tL~rfGNT---SSaSI~~aL~~~eakgrik~GDrVl~iaFGsGf~~~sav~~~~~ 483 (511)
T PLN02192 420 QLSDWHMEPSRMTLYRFGNT---SSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALR 483 (511)
T ss_pred CCCchhhhHHHHHHhHcCCh---HHhHHHHHHHHHHHcCCCCCCCEEEEEEEcchHhhhhhheeeec
Confidence 45665554444446776643 34444457777778888999999999999999998888776653
No 209
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.15 E-value=40 Score=29.51 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=17.7
Q ss_pred CCCCCCc-ccCCCceeeCC-CCCcce
Q 009781 89 GPSCTES-YSLDEVVYRSQ-SGGLLD 112 (526)
Q Consensus 89 t~~cg~~-~~~~~~~~~c~-cGGll~ 112 (526)
|+.||+. |.+.-....|| ||--|.
T Consensus 12 Cp~CG~kFYDLnk~PivCP~CG~~~~ 37 (108)
T PF09538_consen 12 CPSCGAKFYDLNKDPIVCPKCGTEFP 37 (108)
T ss_pred CCCCcchhccCCCCCccCCCCCCccC
Confidence 8999977 47766667797 777664
No 210
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=26.95 E-value=5.3e+02 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=21.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
.+.++...+|..|.+++....+.|.+++++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 356666667999988887777778665555
No 211
>PRK07791 short chain dehydrogenase; Provisional
Probab=26.91 E-value=3.5e+02 Score=27.05 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=42.6
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCc-----CCHHh----HHhHHhCCCEEEEECC---CHHHHHHHHHHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANK-----ISIAQ----LVQPIANGAFVLSLDT---DFDGCMQLIREV 291 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~-----~s~~k----~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~ 291 (526)
...+|+..++--|.++|....+.|.+++++.-... .+..+ ...+...|.++..+.. +.++..+.++++
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 35688877788899999878888988777642110 00111 2234455766655543 355566666666
Q ss_pred HhcC
Q 009781 292 TSEL 295 (526)
Q Consensus 292 ~~~~ 295 (526)
.++.
T Consensus 87 ~~~~ 90 (286)
T PRK07791 87 VETF 90 (286)
T ss_pred HHhc
Confidence 5543
No 212
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=26.67 E-value=21 Score=35.66 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=22.4
Q ss_pred eEEEEeccchH--HHHHHHHHHhcCCCEEEEcCC
Q 009781 225 IGVGCASTGDT--SAALSAYCASAGVPSIVFLPA 256 (526)
Q Consensus 225 ~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~ 256 (526)
..||..||... +..+..++.+.|.+++++=+.
T Consensus 181 l~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~ 214 (244)
T PRK14138 181 LMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLG 214 (244)
T ss_pred EEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCC
Confidence 34566677654 566667788888888887765
No 213
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.56 E-value=3.6e+02 Score=22.06 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=36.3
Q ss_pred ceEEEEeccchH--HHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCC-CEEEEECCC
Q 009781 224 VIGVGCASTGDT--SAALSAYCASAGVPSIVFLPANKISIAQLVQPIANG-AFVLSLDTD 280 (526)
Q Consensus 224 ~~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~G-A~Vi~v~g~ 280 (526)
...++.++.-|. +.+.+.+|++.+.+++++- . ..+......+..++ -+|+.++|.
T Consensus 25 ~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~ 82 (92)
T PF04122_consen 25 SDKVYIASGDNFADALSASPLAAKNNAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGE 82 (92)
T ss_pred CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCC
Confidence 345666664455 4555678888888766555 4 47777777787774 577777764
No 214
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.51 E-value=3.1e+02 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.5
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
..+|+..+|.-|.+++..-...|.++++..-
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5788888899999999877888988877553
No 215
>PRK05650 short chain dehydrogenase; Provisional
Probab=26.48 E-value=2.8e+02 Score=27.15 Aligned_cols=68 Identities=10% Similarity=-0.035 Sum_probs=40.1
Q ss_pred EEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 226 GVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 226 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
.+|+..+|..|.+++..-...|.+++++.-...........+...|.++..+..| .++..+.+.++.+
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5777888899999997777789987776543210111122344556666555544 3444455554443
No 216
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.46 E-value=3.6e+02 Score=26.07 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=40.0
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHH-hHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLV-QPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~-q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
...+|+..+|.-|.+++..-...|.+++++.-.. ...+.. .+...|.++..+..| .++..+.++++.+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT--NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3678888888889999977778899877765431 222222 233456555444433 3334444444443
No 217
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=26.43 E-value=28 Score=35.41 Aligned_cols=56 Identities=7% Similarity=0.003 Sum_probs=35.0
Q ss_pred eEEEEeccchH--HHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHH
Q 009781 225 IGVGCASTGDT--SAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLI 288 (526)
Q Consensus 225 ~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~ 288 (526)
..+|..||+.. ++.+..++.+.|.+++++=|.. +.... .-+. +.+.++.++...++
T Consensus 202 lllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~-t~~~~------~~~d-~~i~~~~~~~~~~~ 259 (271)
T PTZ00409 202 LLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISK-TYITN------RISD-YHVRAKFSELAQIS 259 (271)
T ss_pred EEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCC-CCCCC------cccc-EEEECcHHHHHHHH
Confidence 45667788876 6777778888899998888764 22110 0123 34566666665444
No 218
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=26.39 E-value=3.2e+02 Score=26.42 Aligned_cols=69 Identities=12% Similarity=0.019 Sum_probs=40.0
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
...+|+..+|.-|.+++..-...|.+++++..... ...+ ..++...|.++..+..| .++..+.++++.+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINAD-AANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36778888888899999777788988777654321 1111 22344556665444433 3344444444433
No 219
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.26 E-value=41 Score=23.27 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=14.5
Q ss_pred CCCCCCCcccCC-----CceeeCC-CCC
Q 009781 88 AGPSCTESYSLD-----EVVYRSQ-SGG 109 (526)
Q Consensus 88 ~t~~cg~~~~~~-----~~~~~c~-cGG 109 (526)
+|+.||..|+.. +....|| ||+
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 489999977532 2344685 777
No 220
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=26.12 E-value=7.3e+02 Score=25.47 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCcC-CHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHH-
Q 009781 236 SAALSAYCASAGVPSIVFLPANKI-SIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKT- 313 (526)
Q Consensus 236 g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T- 313 (526)
|+.+|.-.+.+|.++++-=|.-.+ ++.........|++|+ +.|.. +.+.+-..+ -+.|+ |..|
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv--~dD~e---------aa~~~Ei~V-LFTPF---Gk~T~ 97 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVV--SDDAE---------AAEHGEIHV-LFTPF---GKATF 97 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEe--cCchh---------hhhcceEEE-Eeccc---chhhH
Confidence 566777778889999888887433 3444555667888775 32221 111221111 13454 4444
Q ss_pred -HHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHH
Q 009781 314 -AAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGF 347 (526)
Q Consensus 314 -~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf 347 (526)
|+.||++.++. .+|++++-+-..+ .+|.++
T Consensus 98 ~Iarei~~hvpE---gAVicnTCT~sp~-vLy~~L 128 (340)
T COG4007 98 GIAREILEHVPE---GAVICNTCTVSPV-VLYYSL 128 (340)
T ss_pred HHHHHHHhhCcC---CcEecccccCchh-HHHHHh
Confidence 88999999873 5688887665443 455544
No 221
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=26.05 E-value=34 Score=23.78 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=16.0
Q ss_pred CCCCCCcccCCCce----eeCC-CCCcce
Q 009781 89 GPSCTESYSLDEVV----YRSQ-SGGLLD 112 (526)
Q Consensus 89 t~~cg~~~~~~~~~----~~c~-cGGll~ 112 (526)
|+.||+.|-..... -.|+ |||.|.
T Consensus 4 C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 4 CPKCGRIYHIEFNPPKVEGVCDNCGGELV 32 (36)
T ss_dssp ETTTTEEEETTTB--SSTTBCTTTTEBEB
T ss_pred cCCCCCccccccCCCCCCCccCCCCCeeE
Confidence 78999988754332 3474 888764
No 222
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=25.88 E-value=2.2e+02 Score=29.42 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=35.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEE
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVL 275 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 275 (526)
..+|.. .|..|...+.+++..|.+++++.... .++.++..++.+|++.+
T Consensus 175 ~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~-~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVLG-AGPIGLLAALLLRLRGFEVYVLNRRD-PPDPKADIVEELGATYV 223 (355)
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEe
Confidence 445554 58889888889999999866665543 35667778889999853
No 223
>PRK12937 short chain dehydrogenase; Provisional
Probab=25.78 E-value=3.5e+02 Score=25.74 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=35.9
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCC-HHhHHhHHhCCCEEEEECCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKIS-IAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g~ 280 (526)
...+|+..+|.-|.++|-.-.+.|.+++++.-..... ......+..+|.++..+..|
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3568888889999999988888899877665332101 11122344567776655544
No 224
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=25.58 E-value=4.2e+02 Score=25.32 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=40.5
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCC-HHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKIS-IAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
...+|+..+|--|.++|......|.+++++....... ......+...|.++..+..| .+...+.++++.+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567888888889999977777898877654322101 11112344567777666544 3334444444433
No 225
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=25.39 E-value=3.4e+02 Score=26.18 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=25.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
..+|+..+|--|.+++..-.+.|.+++++..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 5788888899999999888888998776643
No 226
>PRK06114 short chain dehydrogenase; Provisional
Probab=25.29 E-value=4.4e+02 Score=25.47 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=34.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCC-HHhHHhHHhCCCEEEEECC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKIS-IAQLVQPIANGAFVLSLDT 279 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g 279 (526)
..+|+..+|--|.++|..-...|.+++++....... ..-..++...|.++..+..
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 678888888889999977788899888776432111 1112334555666554443
No 227
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=25.21 E-value=18 Score=34.43 Aligned_cols=27 Identities=33% Similarity=0.685 Sum_probs=21.8
Q ss_pred CCCCCCcccCCCce---eeCC-CCCcceeccc
Q 009781 89 GPSCTESYSLDEVV---YRSQ-SGGLLDVQHD 116 (526)
Q Consensus 89 t~~cg~~~~~~~~~---~~c~-cGGll~v~~d 116 (526)
|+.|...|+|+++. +.|| ||+.|+ .+|
T Consensus 116 C~~~~~r~sfdeA~~~~F~Cp~Cg~~L~-~~d 146 (176)
T COG1675 116 CPNCHVKYSFDEAMELGFTCPKCGEDLE-EYD 146 (176)
T ss_pred CCCCCCcccHHHHHHhCCCCCCCCchhh-hcc
Confidence 89999999998774 5796 999984 544
No 228
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=25.18 E-value=2.6e+02 Score=27.19 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=23.0
Q ss_pred EEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 226 GVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 226 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
.+|+..+|.-|.++|..-.+.|.+++++.
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 57788888899999987778898766653
No 229
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=25.18 E-value=34 Score=33.68 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=20.5
Q ss_pred eeeccCCCCCCCCCcccCCCc--eeeCC-CCCcce
Q 009781 81 AKYVPFNAGPSCTESYSLDEV--VYRSQ-SGGLLD 112 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~--~~~c~-cGGll~ 112 (526)
+.++- |..|+..|+.++. ..+|+ |||++.
T Consensus 116 ~~~~~---C~~C~~~~~~~~~~~~p~C~~Cgg~lr 147 (225)
T cd01411 116 LYRIY---CTVCGKTVDWEEYLKSPYHAKCGGVIR 147 (225)
T ss_pred cCeeE---eCCCCCccchhhcCCCCCCCCCCCEeC
Confidence 55566 8889998876544 24685 999864
No 230
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=24.97 E-value=4.1e+02 Score=26.44 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=18.5
Q ss_pred CCCcCCHHhHHhHHhCCCEEEEECCCH
Q 009781 255 PANKISIAQLVQPIANGAFVLSLDTDF 281 (526)
Q Consensus 255 P~~~~s~~k~~q~~~~GA~Vi~v~g~~ 281 (526)
|....+...+..+...|.+.+.|.|+.
T Consensus 16 P~k~~~~~~~~~~~~~gtdai~vGGS~ 42 (232)
T PRK04169 16 PDKPLPDEALEAICESGTDAIIVGGSD 42 (232)
T ss_pred CCCCCCHHHHHHHHhcCCCEEEEcCCC
Confidence 765444444455667889999999875
No 231
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=24.72 E-value=7.6e+02 Score=27.35 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=45.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc---CCCcCCHHhHHh----HHhCCCEEEEECCCHHHHHHHHHHHHhcCC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL---PANKISIAQLVQ----PIANGAFVLSLDTDFDGCMQLIREVTSELP 296 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v---P~~~~s~~k~~q----~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~ 296 (526)
+.+++.-. +..++++++|++..-++ |...++..++.+ ++..++.++.++..+....+.++.++++.+
T Consensus 372 r~vvt~H~-----af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq~~~~~~~l~~IA~e~G 445 (479)
T TIGR03772 372 RHLITTHD-----AYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEPNLAARSTTLNEIADELG 445 (479)
T ss_pred CEEEEECC-----cHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCchHHHHHHHHHcC
Confidence 45665553 78999999999976544 454566666665 446899999998776544445666666655
No 232
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.71 E-value=2.4e+02 Score=26.70 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=34.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCCH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTDF 281 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~~ 281 (526)
..+|+..+|..|..++..-...|.+++++.-.. ....+ ...+...|.++..+..|.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~ 63 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNE-EAAEALAAELRAAGGEARVLVFDV 63 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh-hHHHHHHHHHHhcCCceEEEEccC
Confidence 567888889999999877777899865554321 11111 223445677776655543
No 233
>PRK05693 short chain dehydrogenase; Provisional
Probab=24.64 E-value=4.1e+02 Score=26.05 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=42.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT-DFDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~~~~ 294 (526)
..+|+..||-.|.+++-...+.|.+++++.-. ..+...+...|.+.+.+|- +.++..+.++++.++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK----AEDVEALAAAGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 46777788888999998778889887765432 2344445556777766663 445555566555443
No 234
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=24.63 E-value=3.5e+02 Score=26.06 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=39.6
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
...+|+..+|..|.+++..-.+.|.+++++.-.......-...+...|.++..+..| .++..+.++++..
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 356788888889999997777789887666543210011122244456555444433 4444455555444
No 235
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=24.62 E-value=3.6e+02 Score=25.72 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=39.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhH-HhHHhCCCEEEEECCC---HHHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQL-VQPIANGAFVLSLDTD---FDGCMQLIREVT 292 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~ 292 (526)
..+|+..+|.-|.+++..-.+.|.+++++.-.. ....++ ..+...+.++..+..| .++..+.++++.
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR-EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 568888889999999988788898877665321 111111 1233445555555544 344445555443
No 236
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.60 E-value=3.8e+02 Score=28.11 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=39.5
Q ss_pred CeEEEeCHHHHHHHHHH-HHh---cC---Ceecch---HHHHHH--HHHHHHHcCCCCCCCeEEEEECCCCCCchHHH
Q 009781 417 GIVEEATEEELMDVSAQ-ADS---TG---MFVCPH---TGVALS--ALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSK 482 (526)
Q Consensus 417 g~~v~Vsd~ei~~A~~~-l~~---~G---i~veP~---sA~alA--al~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~ 482 (526)
..++.|+.++-..-+++ +.+ .. +++||. ||.|+| |+.- .++ .++..++|+-++|-.++.+.-
T Consensus 51 ~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~-~~~---~~d~~~lVlpsDH~I~d~~af 124 (333)
T COG0836 51 EEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSA-TAE---GGDALVLVLPSDHVIADEEAF 124 (333)
T ss_pred cCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHH-HHh---CCCcEEEEecCcceeccHHHH
Confidence 45677887777766663 643 33 999994 455555 4433 333 236678888899988876553
No 237
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.56 E-value=8.5e+02 Score=26.11 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHH
Q 009781 237 AALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAI 316 (526)
Q Consensus 237 ~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~ 316 (526)
..+.-+=...|+++.+++|.+ .+..++..+..-..+|+... +.....++.+.++.+.-++.. +|+.+++....-.
T Consensus 182 ~ei~~lL~~~Gl~v~~~~~~~-~~~~~i~~~~~A~lniv~~~---~~~~~~a~~L~~~~GiP~~~~-~p~G~~~t~~~l~ 256 (430)
T cd01981 182 RELKRLLHTLGIEVNVVIPEG-ASVDDLNELPKAWFNIVPYR---EYGLSAALYLEEEFGMPSVKI-TPIGVVATARFLR 256 (430)
T ss_pred HHHHHHHHHcCCeEEEEEcCC-CCHHHHHhhhhCeEEEEecH---HHHHHHHHHHHHHhCCCeEec-cCCChHHHHHHHH
Confidence 455556677899999988886 56666665544444444322 123445555556666433433 6777777766666
Q ss_pred HHHHHcC
Q 009781 317 EILQQFD 323 (526)
Q Consensus 317 EI~eQl~ 323 (526)
+|.+.++
T Consensus 257 ~i~~~~g 263 (430)
T cd01981 257 EIQELLG 263 (430)
T ss_pred HHHHHhC
Confidence 6666554
No 238
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.52 E-value=8.3e+02 Score=25.59 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=35.5
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCCCEEE
Q 009781 196 ISHTGSFKDLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPSIV 252 (526)
Q Consensus 196 ~nPTGSFKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V 252 (526)
.+..-||..--..+ .. ..+++..|+-.++..++.+++.+|.+++|+.+-
T Consensus 44 ~~~~dsf~~~~~~C--~~------~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~ 92 (371)
T cd06388 44 IETANSFAVTNAFC--SQ------YSRGVFAIFGLYDKRSVHTLTSFCSALHISLIT 92 (371)
T ss_pred cCCCChhHHHHHHH--HH------HhCCceEEEecCCHHHHHHHHHHhhCCCCCeee
Confidence 46778887654321 11 123477888888888899999999999999774
No 239
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.50 E-value=4.8e+02 Score=26.37 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=42.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCH-HhHHhHHhCCCEEEEECCC---HHHHHHHHHHHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISI-AQLVQPIANGAFVLSLDTD---FDGCMQLIREVT 292 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~-~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~ 292 (526)
...+|+..+|.-|.++|..-.+.|.++++..-...... .-..+++..|.++..+..| .+++.+.+++..
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 36788888888999999777788988776643211111 1223456678888777655 334444444443
No 240
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=24.39 E-value=2.2e+02 Score=27.59 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=34.9
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCCHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTDFD 282 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~~d 282 (526)
...+|+..+|.-|.++|..-...|.+++++. .+.....+ ...+...|.++..+..|..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~-r~~~~~~~~~~~i~~~~~~~~~~~~Dl~ 71 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSA-RKAEELEEAAAHLEALGIDALWIAADVA 71 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 3578888888889999977777898765543 22111111 1223456777666665543
No 241
>PRK08813 threonine dehydratase; Provisional
Probab=24.34 E-value=7.1e+02 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCchH
Q 009781 329 WVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPL 373 (526)
Q Consensus 329 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~~~~~l 373 (526)
.|...+||.|...+.+ ++.+|+ +.+.+-|+++++.
T Consensus 84 VV~aSsGN~G~alA~a-----a~~~Gi-----~~~IvvP~~~~~~ 118 (349)
T PRK08813 84 VICASAGNHAQGVAWS-----AYRLGV-----QAITVMPHGAPQT 118 (349)
T ss_pred EEEECCCHHHHHHHHH-----HHHcCC-----CEEEEEcCCCCHH
Confidence 3444467766655554 567776 4555667775543
No 242
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.31 E-value=2.3e+02 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=23.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
..+|+..+|..|.+++-...+.|.+++++
T Consensus 9 ~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 9 RALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 56788888999999998778889886666
No 243
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=24.28 E-value=6.9e+02 Score=24.58 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=23.1
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCeeecc
Q 009781 269 ANGAFVLSLDTDFDGCMQLIREVTSELPIYLAN 301 (526)
Q Consensus 269 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n 301 (526)
..|.+|..|.... ...+.+++.++..+.++++
T Consensus 60 ~~~g~iLfV~tk~-~~~~~v~~~a~~~~~~yv~ 91 (225)
T TIGR01011 60 ANGGKILFVGTKK-QAKEIIKEEAERCGMFYVN 91 (225)
T ss_pred hCCCEEEEEeCCH-HHHHHHHHHHHHhCCcccC
Confidence 4688888887764 5677788887776666555
No 244
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=24.27 E-value=2.3e+02 Score=27.05 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=40.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCH---HHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDF---DGCMQLIREVT 292 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~---dd~~~~~~~~~ 292 (526)
+.+|+..+|..|.+++..-.+.|.+++++.-...........+...+.++..+..|. ++..+..+++.
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV 78 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 567888889999999977777898776665221101122233455676666665543 33444444443
No 245
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=24.23 E-value=2e+02 Score=27.76 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=27.5
Q ss_pred ccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhH-HhCCCEEEEECC
Q 009781 231 STGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQP-IANGAFVLSLDT 279 (526)
Q Consensus 231 SSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~GA~Vi~v~g 279 (526)
+|+.-|.++|..-.+.|.++++..-....-...+..+ ..+|.+++.++-
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 4566788888777777877777655431001112222 246777655553
No 246
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.08 E-value=32 Score=33.43 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=19.6
Q ss_pred eEEEEeccchH--HHHHHHHHHhcCCCEEEEcCC
Q 009781 225 IGVGCASTGDT--SAALSAYCASAGVPSIVFLPA 256 (526)
Q Consensus 225 ~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~ 256 (526)
..|+..||+.. +..+...+.+.|.+++++=|+
T Consensus 158 lllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 158 LFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred EEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 34555666654 455555666777777776665
No 247
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.95 E-value=6.7e+02 Score=24.27 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCC
Q 009781 312 KTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGL 355 (526)
Q Consensus 312 ~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl 355 (526)
..+..+++++.+...+.++++|+.++..-...-+.-+.+.++|.
T Consensus 15 ~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~ 58 (217)
T cd03145 15 RAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGA 58 (217)
T ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCC
Confidence 34566677787655789999999876532222222223456775
No 248
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=23.83 E-value=4.5e+02 Score=26.46 Aligned_cols=47 Identities=13% Similarity=-0.015 Sum_probs=32.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEE
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVL 275 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 275 (526)
..++...+|-.|.++.-+|+..|.++++... +..+...++.+|++.+
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~----s~~~~~~~~~lGa~~v 187 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG----SDEKVAYLKKLGFDVA 187 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHcCCCEE
Confidence 4445555688888888899999997665543 3446777788898544
No 249
>PRK12744 short chain dehydrogenase; Provisional
Probab=23.82 E-value=5e+02 Score=25.04 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=40.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhH----HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQL----VQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~----~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|.-|.++|-.-...|.+++++.........+. .++...|.++..+..| .++..+.+.++.+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5778888888899999777888999666653211111122 2344557666555544 3444555555443
No 250
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.70 E-value=38 Score=33.61 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=19.1
Q ss_pred eeeccCCCCCCCCCcccCCCce----eeCC-CCCcce
Q 009781 81 AKYVPFNAGPSCTESYSLDEVV----YRSQ-SGGLLD 112 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~~----~~c~-cGGll~ 112 (526)
..++. |..|+..|+.++.. ..|+ |||++.
T Consensus 120 ~~~~~---C~~C~~~~~~~~~~~~~~p~C~~Cgg~lr 153 (242)
T PRK00481 120 LLRAR---CTKCGQTYDLDEYLKPEPPRCPKCGGILR 153 (242)
T ss_pred cCcee---eCCCCCCcChhhhccCCCCCCCCCCCccC
Confidence 34455 88899888755333 2485 999864
No 251
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.50 E-value=2.6e+02 Score=26.87 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=39.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTD---FDGCMQLIREVT 292 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~ 292 (526)
..+|+..||..|.+++-.-...|.+++++.-.. ....+ ...+...+.++..+..| .++..+.+.++.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLND-EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 567888889999999977677799877765332 11111 12344567666555544 334444444443
No 252
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.42 E-value=7.2e+02 Score=24.45 Aligned_cols=74 Identities=14% Similarity=-0.014 Sum_probs=48.2
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC-Cch
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS-LNS 305 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np 305 (526)
=++.+|=...-++...++.++ +++|=.-. -.++.|..+....||+.+..++--.+.. +.+.+++..+.+. .+|
T Consensus 43 EITl~sp~a~e~I~~l~~~~p-~~lIGAGT-VL~~~q~~~a~~aGa~fiVsP~~~~ev~----~~a~~~~ip~~PG~~Tp 116 (211)
T COG0800 43 EITLRTPAALEAIRALAKEFP-EALIGAGT-VLNPEQARQAIAAGAQFIVSPGLNPEVA----KAANRYGIPYIPGVATP 116 (211)
T ss_pred EEecCCCCHHHHHHHHHHhCc-ccEEcccc-ccCHHHHHHHHHcCCCEEECCCCCHHHH----HHHHhCCCcccCCCCCH
Confidence 345666777888888888888 44443333 2578889999999999987776544433 3444556555554 345
Q ss_pred h
Q 009781 306 L 306 (526)
Q Consensus 306 ~ 306 (526)
-
T Consensus 117 t 117 (211)
T COG0800 117 T 117 (211)
T ss_pred H
Confidence 3
No 253
>PRK06198 short chain dehydrogenase; Provisional
Probab=23.22 E-value=4.4e+02 Score=25.40 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=40.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCH-HhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISI-AQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~-~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|..|..++......|.+.++++..+.... .....+...|.++..+..| .++..+.+.++.+
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5677788888999999888888998444444321111 1122345567777555443 3444445544433
No 254
>PRK09242 tropinone reductase; Provisional
Probab=23.19 E-value=4.1e+02 Score=25.67 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=39.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhH-HhHHhC--CCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQL-VQPIAN--GAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~--GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|.-|.+++......|.+++++.-.. ....+. .++... +.++..+..| .++..+.+.++.+
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDA-DALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567888888899999987788898876665321 111111 122233 5677666554 3334444444433
No 255
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.99 E-value=1.4e+02 Score=29.41 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHH-HHHHcCCCCCCCeEEEEecCCCchHHHHHHh
Q 009781 315 AIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQ-MCKELGLVDRIPRLVCAQAANANPLYLYYKS 379 (526)
Q Consensus 315 a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~-~l~~~Gl~~~~prvi~Vq~~~~~~l~~a~~~ 379 (526)
.+||.+++......+|+||++.+. .|+.++|+ ++.++|+---.|+..|.-.++.+|..+.|.+
T Consensus 65 ~~~l~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~ 128 (217)
T PF02593_consen 65 TYELPEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAE 128 (217)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHH
Confidence 456666655445789999999888 78888886 4566673112355555544444666666643
No 256
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.89 E-value=87 Score=29.66 Aligned_cols=16 Identities=44% Similarity=0.542 Sum_probs=14.0
Q ss_pred CCCCccccCcCcCCcc
Q 009781 22 TSQPSLLKKPISSNYP 37 (526)
Q Consensus 22 ~~~~~~~~~~~~~~~~ 37 (526)
.+||+.+||++.+|+-
T Consensus 28 ~t~p~vpkK~~ks~~~ 43 (211)
T KOG0855|consen 28 KTQPSVPKKSSKSNFF 43 (211)
T ss_pred cccccccccccccCcc
Confidence 4799999999999973
No 257
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=22.87 E-value=1e+03 Score=26.07 Aligned_cols=128 Identities=13% Similarity=-0.078 Sum_probs=73.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhc-------CCCE-EEEcCCCcCCHHhHHh--HH----hCCCEEEEECCCHHHHHHHHH
Q 009781 224 VIGVGCASTGDTSAALSAYCASA-------GVPS-IVFLPANKISIAQLVQ--PI----ANGAFVLSLDTDFDGCMQLIR 289 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~-------Gi~~-~V~vP~~~~s~~k~~q--~~----~~GA~Vi~v~g~~dd~~~~~~ 289 (526)
.+..|...+|+-|.++|+..... |+-. ++++..+ ....+-.. +. .+..+|....++|+++.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~-~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k---- 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERS-KQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ---- 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCC-cchhHHHHHHHHHhhhhhcCceEEecCCHHHhC----
Confidence 45555566699999999877777 6643 3344443 22222222 21 12235554567776543
Q ss_pred HHHhcCCeeecc---CCchh--H---HhHHHHHHHHHHHHcCC-CCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCC
Q 009781 290 EVTSELPIYLAN---SLNSL--R---LEGQKTAAIEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIP 360 (526)
Q Consensus 290 ~~~~~~~~~~~n---s~Np~--~---i~G~~T~a~EI~eQl~~-~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~p 360 (526)
+-.+..+- +..|. | +.....+.-++.+++.. ..|+.+|+=++|=..+...+ ..+..|++ ..
T Consensus 176 ----daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v----~~k~sg~~--~~ 245 (444)
T PLN00112 176 ----DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI----CLKNAPNI--PA 245 (444)
T ss_pred ----cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH----HHHHcCCC--Cc
Confidence 22222211 11121 2 33334577777777775 47999999999988887765 35667773 36
Q ss_pred eEEEEe
Q 009781 361 RLVCAQ 366 (526)
Q Consensus 361 rvi~Vq 366 (526)
|+|+.-
T Consensus 246 rViGtg 251 (444)
T PLN00112 246 KNFHAL 251 (444)
T ss_pred ceEEee
Confidence 888864
No 258
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=22.83 E-value=8e+02 Score=24.76 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=23.4
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccC
Q 009781 269 ANGAFVLSLDTDFDGCMQLIREVTSELPIYLANS 302 (526)
Q Consensus 269 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 302 (526)
..|.+|..|.... .+.+.+++.+...+.++++.
T Consensus 62 ~~~g~iLfVgTk~-~~~~~V~~~A~~~~~~yv~~ 94 (258)
T PRK05299 62 ANGGKILFVGTKK-QAQEAIAEEAERCGMPYVNH 94 (258)
T ss_pred hCCCEEEEEECcH-HHHHHHHHHHHHhCCeeeCC
Confidence 4688888887663 57778888877766666553
No 259
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=22.83 E-value=8.4e+02 Score=25.01 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=66.2
Q ss_pred ccchHHHHHHHHHHhcCC-CEEEEcCCCcCCHHhHHhH--Hh------CCCEEEEECCCHHHHHHHHHHHHhcCCee--e
Q 009781 231 STGDTSAALSAYCASAGV-PSIVFLPANKISIAQLVQP--IA------NGAFVLSLDTDFDGCMQLIREVTSELPIY--L 299 (526)
Q Consensus 231 SSGN~g~AlAa~aa~~Gi-~~~V~vP~~~~s~~k~~q~--~~------~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~--~ 299 (526)
-+|+.|..+|+..+..|+ + ++++... ....+-..+ .. ...+ +...++++++ ++-.+. .
T Consensus 8 GaG~vG~~iA~~la~~g~~~-VvlvDi~-~~l~~g~a~d~~~~~~~~~~~~~-i~~t~d~~~~--------~~aDiVIit 76 (305)
T TIGR01763 8 GAGFVGATTAFRLAEKELAD-LVLLDVV-EGIPQGKALDMYEASPVGGFDTK-VTGTNNYADT--------ANSDIVVIT 76 (305)
T ss_pred CcCHHHHHHHHHHHHcCCCe-EEEEeCC-CChhHHHHHhhhhhhhccCCCcE-EEecCCHHHh--------CCCCEEEEc
Confidence 359999999988888777 6 4444432 122121111 11 1122 2344666542 122222 2
Q ss_pred cc-CCch--hH---HhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 009781 300 AN-SLNS--LR---LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQ 366 (526)
Q Consensus 300 ~n-s~Np--~~---i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq 366 (526)
+. +.+| -| +.....+..++.+++....|+.+++=+.|=..+...+ ..+..|+ |..|+||.-
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~----~~~~sg~--~~~rviG~g 143 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYV----AWQKSGF--PKERVIGQA 143 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH----HHHHHCc--CHHHEEEec
Confidence 22 1222 12 3345568888888876556888888777766665544 2345677 556899975
No 260
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.74 E-value=4e+02 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=24.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|..|.+++......|.+++++.
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578888889999999977778899865554
No 261
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.69 E-value=41 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=14.7
Q ss_pred CCCCCCcccCC-CceeeCC-CCCcc
Q 009781 89 GPSCTESYSLD-EVVYRSQ-SGGLL 111 (526)
Q Consensus 89 t~~cg~~~~~~-~~~~~c~-cGGll 111 (526)
|.+||.+++++ ....+|+ ||.-.
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeE
Confidence 78899988875 2345895 88643
No 262
>COG4307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.55 E-value=28 Score=35.13 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=20.5
Q ss_pred eeeccCCCCCCCCCcccCCCceeeC-CCCCcc
Q 009781 81 AKYVPFNAGPSCTESYSLDEVVYRS-QSGGLL 111 (526)
Q Consensus 81 ~~y~s~~~t~~cg~~~~~~~~~~~c-~cGGll 111 (526)
||-.+ |++||+.+-|+.. .| .||..|
T Consensus 1 mk~Fh---C~~CgQ~v~FeN~--~C~~Cg~~L 27 (349)
T COG4307 1 MKDFH---CPNCGQRVAFENS--ACLSCGSAL 27 (349)
T ss_pred CCccc---CCCCCCeeeecch--HHHhhhhHh
Confidence 66677 9999999998653 47 688765
No 263
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=22.46 E-value=3.2e+02 Score=25.19 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHhcCCCEEEEcCCCc-CCHH--hH----HhHHhCCCEEEEECCCHHH
Q 009781 233 GDTSAALSAYCASAGVPSIVFLPANK-ISIA--QL----VQPIANGAFVLSLDTDFDG 283 (526)
Q Consensus 233 GN~g~AlAa~aa~~Gi~~~V~vP~~~-~s~~--k~----~q~~~~GA~Vi~v~g~~dd 283 (526)
+|+..|+...++++|+.++++-|++- .++. -+ ......|.++... .+.++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~e 69 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT-DDIEE 69 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE-SSHHH
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE-eCHHH
Confidence 79999999999999999999999871 2331 12 1233458888766 44543
No 264
>PRK07326 short chain dehydrogenase; Provisional
Probab=22.38 E-value=3.9e+02 Score=25.29 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=24.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+++..+|..|.+++.+....|.+++++.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 567888889999999977777899876664
No 265
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=22.30 E-value=1.2e+02 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.2
Q ss_pred EeccchHHHHHHHHHHhcCCCEEEEcCCC
Q 009781 229 CASTGDTSAALSAYCASAGVPSIVFLPAN 257 (526)
Q Consensus 229 ~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~ 257 (526)
.--+||.|.|+|...+..|.++.++.++.
T Consensus 4 ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 4 VIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 33569999999999999999999998863
No 266
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=22.05 E-value=4.6e+02 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.013 Sum_probs=25.7
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPA 256 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~ 256 (526)
...+|+..++.-|.++|..-.+.|.+++++...
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 357888888888999998777889987766543
No 267
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=22.00 E-value=5.8e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHH--hcCCCceEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 205 LGMTVLVSQVNRLK--RMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 205 Rga~~~v~~a~~~~--~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
+|....+..+.+.. ...-..++|+.--.||.|..+|......|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 56666666554321 11111244555566999999999888899887743
No 268
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=21.98 E-value=59 Score=36.60 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=20.1
Q ss_pred ceeeccCCCCCCCCCcccCC-------------CceeeCC-CCCcce
Q 009781 80 SAKYVPFNAGPSCTESYSLD-------------EVVYRSQ-SGGLLD 112 (526)
Q Consensus 80 ~~~y~s~~~t~~cg~~~~~~-------------~~~~~c~-cGGll~ 112 (526)
.--||+ |+.||....++ .+.|.|+ ||+...
T Consensus 197 r~~~vp---CPhCg~~~~l~~~~l~w~~~~~~~~a~y~C~~Cg~~i~ 240 (557)
T PF05876_consen 197 RRYYVP---CPHCGEEQVLEWENLKWDKGEAPETARYVCPHCGCEIE 240 (557)
T ss_pred eEEEcc---CCCCCCCccccccceeecCCCCccceEEECCCCcCCCC
Confidence 355788 99999755442 3567785 777653
No 269
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=21.95 E-value=2.5e+02 Score=27.64 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=36.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEEC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLD 278 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~ 278 (526)
..||..|+++.-.....+....+.+++|+..+. ..++..++..|++++.++
T Consensus 75 ~rVIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~---~~~~~~~~~~g~~~i~~~ 125 (218)
T COG1985 75 VRVILDSRLRLPLDSRVFRTGEGAPTIVVTTEP---EEKLRELKEAGVEVILLP 125 (218)
T ss_pred EEEEECCCCcCCchhhhhccCCCCcEEEEecCc---hhhhhHHHhCCCEEEEcC
Confidence 568888889887555555444345666666553 567888889999999887
No 270
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=21.88 E-value=3.3e+02 Score=25.54 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=26.8
Q ss_pred CEEEEcCCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHH
Q 009781 249 PSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREV 291 (526)
Q Consensus 249 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~ 291 (526)
++.|+-..+.+.......+...|++|+.+.-+.+.+.+.+.++
T Consensus 30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 4555544454444445556678999988877776666655554
No 271
>PRK07832 short chain dehydrogenase; Provisional
Probab=21.74 E-value=3.3e+02 Score=26.68 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=38.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEE---EEEC-CCHHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFV---LSLD-TDFDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~V---i~v~-g~~dd~~~~~~~~~~ 293 (526)
..+|+..+|..|.+++...++.|.+++++......-..-...+...|+++ +.+| .+.+++.+.+.++.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHA 74 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHH
Confidence 35778888888999998888889886665432110011122344456543 2233 234445555555443
No 272
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.68 E-value=4.7e+02 Score=25.43 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=39.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhH-HhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQP-IANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
..+|+..+|--|.+++....+.|.+++++-- +..+...+ ...|.++..+..| .++..+.++++.++
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDI----DADNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 6788888888899999888888987766532 12222222 2346555444443 44445555555443
No 273
>PRK06924 short chain dehydrogenase; Provisional
Probab=21.66 E-value=3.8e+02 Score=25.65 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=24.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|.-|.+++-.-.+.|.+++++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEe
Confidence 467788889999999977777899877664
No 274
>PRK05993 short chain dehydrogenase; Provisional
Probab=21.65 E-value=7.7e+02 Score=24.18 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=43.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDT-DFDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~~~ 293 (526)
..+|+..+|..|.++|-.....|.+++++.-. ..++..+...|.+++.+|- +.++..+.++++.+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~----~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK----EEDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 56888888999999997777789987776432 3344455556777776663 34455555555543
No 275
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.65 E-value=4.6e+02 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=23.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|--|.+++..-...|.+++++.
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578888888889999877778898866654
No 276
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=21.64 E-value=4.4e+02 Score=25.55 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=38.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHH-hCCCEEEEECC---CHHHHHHHHHHHHhc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPI-ANGAFVLSLDT---DFDGCMQLIREVTSE 294 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~-~~GA~Vi~v~g---~~dd~~~~~~~~~~~ 294 (526)
..+|+..+|.-|.+++......|.+++++.- +..+...+. .++.++..+.. +.++..+.++++.++
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLER----SAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 5688888888899999777888988666532 222333332 23444433333 344555555555443
No 277
>PRK14030 glutamate dehydrogenase; Provisional
Probab=21.61 E-value=3.4e+02 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 204 DLGMTVLVSQVNRLKRMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 204 DRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
-||..+.+..+.+.........+|+..-.||-|..+|-+....|.+++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 36776666655432111112356777778999999999999999998884
No 278
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.58 E-value=6.5e+02 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=19.2
Q ss_pred eEEEEeccchH-H--HHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDT-S--AALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~-g--~AlAa~aa~~Gi~~~V~v 254 (526)
..++-..+||. | .++|.+-...|+++.|++
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 34444455777 3 555677778899988854
No 279
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=21.48 E-value=1.1e+03 Score=25.94 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=67.3
Q ss_pred HHHHHhcCCCEEEEc-------CCC---cCCHHhHHhHHhCCCEEEEECCC-----H-HHHHHHHHHHHhc---CCeee-
Q 009781 240 SAYCASAGVPSIVFL-------PAN---KISIAQLVQPIANGAFVLSLDTD-----F-DGCMQLIREVTSE---LPIYL- 299 (526)
Q Consensus 240 Aa~aa~~Gi~~~V~v-------P~~---~~s~~k~~q~~~~GA~Vi~v~g~-----~-dd~~~~~~~~~~~---~~~~~- 299 (526)
...|+.+|+++++.. ... +............|++.+...++ | -++.+...+++++ ...+.
T Consensus 263 i~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~ 342 (473)
T TIGR01064 263 IRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLT 342 (473)
T ss_pred HHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchhh
Confidence 457788999988865 211 23445566677789988777543 2 3455555554432 11110
Q ss_pred --ccCCc-h----hHHhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Q 009781 300 --ANSLN-S----LRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAA 368 (526)
Q Consensus 300 --~ns~N-p----~~i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~ 368 (526)
....+ . ...+.....+.++++.++ .++||+.+-+|.++..+.+ + .|...|+++.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~---akaIVv~T~SG~TA~~vSr----~------rp~~PIiAvT~~ 405 (473)
T TIGR01064 343 NFNDRKNSDPKPSTITEAIALSAVEAAEKLD---AKAIVVLTESGRTARLLSK----Y------RPNAPIIAVTPN 405 (473)
T ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcC---CCEEEEEcCChHHHHHHHh----h------CCCCCEEEEcCC
Confidence 00000 0 112233345566666765 6899999999998877764 1 155578888763
No 280
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=21.40 E-value=4e+02 Score=25.30 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=38.0
Q ss_pred EEEeccchHHHHHHHHHHhcCCCEEEEcCCCcC-CHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 227 VGCASTGDTSAALSAYCASAGVPSIVFLPANKI-SIAQLVQPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 227 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
+|+..+|.-|.++|....+.|.+++++.-.+.. .......+...+.++..+..| .++..+.+++..+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 72 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIA 72 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 566777888999998888889987766533210 111122344556666555544 3344444444433
No 281
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.30 E-value=3e+02 Score=25.96 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=35.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHH-hHHhCCCEEEEECCCH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLV-QPIANGAFVLSLDTDF 281 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~-q~~~~GA~Vi~v~g~~ 281 (526)
+.+|+..||..|.+++-.....|.+++++...+.....+.. .+...+.++..+..|.
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 65 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADV 65 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCc
Confidence 56788888999999998778889987776654311111222 2334465665555544
No 282
>PRK07904 short chain dehydrogenase; Provisional
Probab=21.23 E-value=6.1e+02 Score=24.66 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=24.1
Q ss_pred CCCceEEEEeccchHHHHHHHHHHhc-CCCEEEEc
Q 009781 221 NKPVIGVGCASTGDTSAALSAYCASA-GVPSIVFL 254 (526)
Q Consensus 221 g~~~~~Vv~aSSGN~g~AlAa~aa~~-Gi~~~V~v 254 (526)
|.+...+|+..||-.|.++|....+. |.+++++.
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~ 40 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAA 40 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe
Confidence 33346788888888899998665555 58777764
No 283
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=21.20 E-value=8.8e+02 Score=24.67 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHhcCCC-EEEEcCCCc-CCHHhHHhH---H-hCCCEEEEECCCHHHHHHHHHHHHhcCCeeecc---C
Q 009781 232 TGDTSAALSAYCASAGVP-SIVFLPANK-ISIAQLVQP---I-ANGAFVLSLDTDFDGCMQLIREVTSELPIYLAN---S 302 (526)
Q Consensus 232 SGN~g~AlAa~aa~~Gi~-~~V~vP~~~-~s~~k~~q~---~-~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n---s 302 (526)
+|+.|.++|......|+. -++++..+. ........+ . ..+..+....++++++ .+-.+...- +
T Consensus 8 aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l--------~~aDIVIitag~~ 79 (306)
T cd05291 8 AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC--------KDADIVVITAGAP 79 (306)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh--------CCCCEEEEccCCC
Confidence 499999999988888975 455554321 111111122 1 1233333334555432 122222111 1
Q ss_pred Cch--hH---HhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 009781 303 LNS--LR---LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQ 366 (526)
Q Consensus 303 ~Np--~~---i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq 366 (526)
..| -| +.....+..++.+++....|+.+++=++|=..+..-. ..+..|+ |..||+|.-
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~----~~~~~g~--p~~~v~g~g 142 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYV----VQKLSGL--PKNRVIGTG 142 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHH----HHHHhCc--CHHHEeecc
Confidence 112 12 3333446777777776567898888888877766544 2334576 555888873
No 284
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.07 E-value=4.9e+02 Score=25.23 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=25.4
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcC
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLP 255 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 255 (526)
...+|+..+|.-|.+++......|.+++++.-
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGR 40 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 36788888888899999877888998776654
No 285
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=21.07 E-value=47 Score=32.55 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=18.3
Q ss_pred EEEEeccchH--HHHHHHHHHhcCCCEEEEcCC
Q 009781 226 GVGCASTGDT--SAALSAYCASAGVPSIVFLPA 256 (526)
Q Consensus 226 ~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~ 256 (526)
.+|..||+.. +..+..++++.|.+++++=++
T Consensus 175 ~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 175 FIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred EEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 4555566543 445566666677777666554
No 286
>PRK05717 oxidoreductase; Validated
Probab=21.01 E-value=4.5e+02 Score=25.34 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=39.3
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHh-HHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQ-PIANGAFVLSLDTD---FDGCMQLIREVTSE 294 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q-~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 294 (526)
...+|+..+|.-|.++|..-...|.+++++.-. ..+... ....+.++..+..| .++..+.+.++.++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLD----RERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC----HHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357888888999999998888889887766322 111111 22345455444443 44444445555443
No 287
>PRK05875 short chain dehydrogenase; Provisional
Probab=20.95 E-value=4.4e+02 Score=25.76 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=25.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL 254 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 254 (526)
..+|+..+|..|.+++......|.+++++.
T Consensus 9 ~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 9 TYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 578888889999999987788899876665
No 288
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.90 E-value=4.9e+02 Score=25.60 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=39.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQ-LVQPIANGAFVLSLDTD---FDGCMQLIREVT 292 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~ 292 (526)
..+|+..+|..|.+++-.....|.+++++.-.. ....+ ...+...|.++..+..| .++..+.++++.
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRV-EKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAE 82 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 567888888889999977778898766654221 11111 12244567777655554 344444554443
No 289
>PLN02932 3-ketoacyl-CoA synthase
Probab=20.82 E-value=2.1e+02 Score=31.58 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCeEEEeCHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCCCCchHHHHhhh
Q 009781 407 RAVYALKNCDGIVEEATEEELMDVSAQADSTGMFVCPHTGVALSALIKLRCKGVIGKTDKTVVVSTAHGLKFTQSKIDYH 486 (526)
Q Consensus 407 ~~l~~l~~~~g~~v~Vsd~ei~~A~~~l~~~Gi~veP~sA~alAal~~l~~~g~i~~~~~vVvv~TG~g~K~~~~~~~~~ 486 (526)
++++.+.+. ..++++++.....-+++.|-. +|+..+.++..+.++|.+.++++|+.+.-|.|+|.-..+.+..
T Consensus 382 ~IIdav~k~----LgL~~~~~e~s~~tL~rfGNT---SSaSI~~~L~~~ea~grik~Gd~vl~iaFGsGf~~~s~vw~~~ 454 (478)
T PLN02932 382 ALIDEMEKN----LHLTPLDVEASRMTLHRFGNT---SSSSIWYELAYTEAKGRMKKGDRIWQIALGSGFKCNSSVWVAL 454 (478)
T ss_pred HHHHHHHHH----cCCChHHHHHHHHHHHHhCCh---hhhHHHHHHHHHHHcCCCCCCCEEEEEEEeccHHHHHHHHHHh
Confidence 455555432 356777755555557777743 3444455666667788889999999999999999877765544
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=20.81 E-value=49 Score=36.15 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCCCCCCcccCCCceeeCC-CC
Q 009781 88 AGPSCTESYSLDEVVYRSQ-SG 108 (526)
Q Consensus 88 ~t~~cg~~~~~~~~~~~c~-cG 108 (526)
.|..||.+.. ...++|| ||
T Consensus 9 ~C~~Cg~~~~--~~~g~Cp~C~ 28 (446)
T PRK11823 9 VCQECGAESP--KWLGRCPECG 28 (446)
T ss_pred ECCcCCCCCc--ccCeeCcCCC
Confidence 3999999877 7889997 65
No 291
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=20.74 E-value=7.6e+02 Score=25.27 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=32.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEE
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVL 275 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 275 (526)
..+|... |-.|.+++.+|+.+|.+++++.. ++.++..++.+|++.+
T Consensus 169 ~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~----~~~~~~~~~~~Ga~~~ 214 (349)
T TIGR03201 169 LVIVIGA-GGVGGYMVQTAKAMGAAVVAIDI----DPEKLEMMKGFGADLT 214 (349)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHhCCceE
Confidence 3444444 89999999999999997544322 3457777788898654
No 292
>PRK07677 short chain dehydrogenase; Provisional
Probab=20.72 E-value=4.2e+02 Score=25.51 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=22.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEE
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVF 253 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 253 (526)
..+|+..+|.-|.+++....+.|.+++++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~ 31 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVIT 31 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 46778888888999997777889876555
No 293
>PRK07206 hypothetical protein; Provisional
Probab=20.59 E-value=9.4e+02 Score=25.36 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=30.3
Q ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHhcCCeeeccCCchhHHhHHHHHHHHHHHHcCCCCCcEE
Q 009781 267 PIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWV 330 (526)
Q Consensus 267 ~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pd~V 330 (526)
++.++...+.. ++ |.....+.++++..++...++..-....-.|....+.+++.+-..|.+.
T Consensus 66 ~~~~~~d~vi~-~~-e~~~~~~a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~ 127 (416)
T PRK07206 66 LRKLGPEAIIA-GA-ESGVELADRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQI 127 (416)
T ss_pred HHHcCCCEEEE-CC-CccHHHHHHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEE
Confidence 34566665544 32 3445555556555554323332222333456666677776553333333
No 294
>PRK09275 aspartate aminotransferase; Provisional
Probab=20.54 E-value=2.9e+02 Score=30.90 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=39.9
Q ss_pred EEEEeccchHHHHHHHHH------HhcCCCEEEEcCCCcCCHHhHHhHHhCCCEEEEECCC----HHHHHHHHHHHHhc-
Q 009781 226 GVGCASTGDTSAALSAYC------ASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTD----FDGCMQLIREVTSE- 294 (526)
Q Consensus 226 ~Vv~aSSGN~g~AlAa~a------a~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~----~dd~~~~~~~~~~~- 294 (526)
.|+....|..|...+..+ -..|=+++|.-|.- ........+..+|++++.++.+ +.-..+.++++...
T Consensus 163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y-~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~ 241 (527)
T PRK09275 163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIF-TPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPS 241 (527)
T ss_pred eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCCh-HHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCC
Confidence 455545445566655443 12344455555653 3343444455667888777532 22112223333222
Q ss_pred CC-eeeccCCchhH
Q 009781 295 LP-IYLANSLNSLR 307 (526)
Q Consensus 295 ~~-~~~~ns~Np~~ 307 (526)
.. ++..|+.||-.
T Consensus 242 tkai~l~nP~NPTG 255 (527)
T PRK09275 242 IKALFLVNPSNPPS 255 (527)
T ss_pred CCEEEEeCCcCCcC
Confidence 23 45567789853
No 295
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=20.53 E-value=5.6e+02 Score=26.00 Aligned_cols=47 Identities=11% Similarity=-0.110 Sum_probs=33.1
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhHHh-CCCEE
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIA-NGAFV 274 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~-~GA~V 274 (526)
...+|.+.+|..|.++.-+|+..|.++++... +..+...++. +|++-
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~----~~~~~~~~~~~lGa~~ 200 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG----SDEKVDLLKNKLGFDD 200 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhcCCce
Confidence 35566666688899988899999998655443 2446666666 88854
No 296
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=20.39 E-value=67 Score=29.37 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 009781 87 NAGPSCTE 94 (526)
Q Consensus 87 ~~t~~cg~ 94 (526)
++|..|+.
T Consensus 92 sRC~~CN~ 99 (147)
T PF01927_consen 92 SRCPKCNG 99 (147)
T ss_pred CccCCCCc
Confidence 34555554
No 297
>PRK07985 oxidoreductase; Provisional
Probab=20.30 E-value=5.2e+02 Score=25.88 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=40.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCC-HHhHH-hHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANKIS-IAQLV-QPIANGAFVLSLDTD---FDGCMQLIREVTS 293 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~-q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 293 (526)
..+|+..+|.-|.++|..-.+.|.++++........ ..++. .+...|.++..+..| .++..+.++++.+
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 578888889999999987788899887764321111 11221 233456666544433 4444555555444
No 298
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.22 E-value=6e+02 Score=27.18 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=43.1
Q ss_pred ceEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCcCCHHhHHhH-HhCCCEEEEECC-CHHHHHHHHHHHHhc
Q 009781 224 VIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQP-IANGAFVLSLDT-DFDGCMQLIREVTSE 294 (526)
Q Consensus 224 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~GA~Vi~v~g-~~dd~~~~~~~~~~~ 294 (526)
...+|+..+|.-|.+++....+.|.+++++-... ...++..+ ...++.++.+|- +.++..+...++.++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~--~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA--AGEALAAVANRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc--cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 3578888888899999988888899877764321 22233333 346777777763 344445555544443
No 299
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.21 E-value=65 Score=29.01 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=17.7
Q ss_pred CCCCCCc-ccCCCceeeCC-CCCcce
Q 009781 89 GPSCTES-YSLDEVVYRSQ-SGGLLD 112 (526)
Q Consensus 89 t~~cg~~-~~~~~~~~~c~-cGGll~ 112 (526)
|+.||+. |.+.-....|| ||-.+.
T Consensus 12 Cp~cg~kFYDLnk~p~vcP~cg~~~~ 37 (129)
T TIGR02300 12 CPNTGSKFYDLNRRPAVSPYTGEQFP 37 (129)
T ss_pred CCCcCccccccCCCCccCCCcCCccC
Confidence 8999976 46666666786 887764
No 300
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.17 E-value=3.3e+02 Score=26.07 Aligned_cols=56 Identities=18% Similarity=0.060 Sum_probs=35.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEc-CCCcCCHHhHHhHHhCCCEEEEECCC
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFL-PANKISIAQLVQPIANGAFVLSLDTD 280 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v-P~~~~s~~k~~q~~~~GA~Vi~v~g~ 280 (526)
..+++..+|--|.+++..-...|.++++.. +...........+...|.++..+..|
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLAD 64 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEec
Confidence 567888888889999977778898876654 32111122234455667766555443
No 301
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=20.16 E-value=2.8e+02 Score=28.30 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Q 009781 308 LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAA 368 (526)
Q Consensus 308 i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~ 368 (526)
..+|..++-+|++.+..+..-.+-.|+|+|=+++.+.-++..+...+...+..+++-+...
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T 70 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRT 70 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEecc
Confidence 4688999999988887544455667899999998888776665554421011256555544
No 302
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=20.16 E-value=2.8e+02 Score=28.30 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Q 009781 308 LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAA 368 (526)
Q Consensus 308 i~G~~T~a~EI~eQl~~~~pd~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prvi~Vq~~ 368 (526)
..+|..++-+|++.+..+..-.+-.|+|+|=+++.+.-++..+...+...+..+++-+...
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T 70 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRT 70 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEecc
Confidence 4688999999988887544455667899999998888776665554421011256555544
No 303
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.06 E-value=5.6e+02 Score=26.03 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=42.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcCCCEEEEcCCCc--------CC-HH-hHHhHHhCCCEEEEECC---CHHHHHHHHHHH
Q 009781 225 IGVGCASTGDTSAALSAYCASAGVPSIVFLPANK--------IS-IA-QLVQPIANGAFVLSLDT---DFDGCMQLIREV 291 (526)
Q Consensus 225 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~--------~s-~~-k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~ 291 (526)
..+|+..++--|.++|..-.+.|.+++++.-... .. .. ....+...|.+++.+.. +.++..+.+.++
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 5677777777899998777888988776542210 00 11 12234456766654543 456666677666
Q ss_pred HhcC
Q 009781 292 TSEL 295 (526)
Q Consensus 292 ~~~~ 295 (526)
.++.
T Consensus 90 ~~~~ 93 (305)
T PRK08303 90 DREQ 93 (305)
T ss_pred HHHc
Confidence 5543
Done!