BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009782
         (526 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic [Vitis vinifera]
 gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/506 (66%), Positives = 408/506 (80%), Gaps = 1/506 (0%)

Query: 20  CGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDL 79
           C  K+ +  K + QKQ+Q  R+       +PKSSPTPLL N K    TKLQAL+++++DL
Sbjct: 9   CLHKSLKINKTQLQKQKQFHRDTKPNLV-FPKSSPTPLLINHKPRNHTKLQALEALLRDL 67

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           ++S+Q+GITV  + F+SLLETC+QL+A +HGI++HRLIPT+LLRK+  +SSKLLRLYA+ 
Sbjct: 68  QASIQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASI 127

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G I+EAH++FDQMS R   AF WNSLISGYAELG YEDA+ALYFQMEEEGV PD+FTFPR
Sbjct: 128 GRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPR 187

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VLKAC G+G I VGE+VH   VR GF  DGFVLNALVDMYAKCGDIVKAR VFD+I  +D
Sbjct: 188 VLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRD 247

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319
            +S+NSMLTGYI HGL ++A  IFR M+  GF+PD VAIS+++     L++  Q+HGWVL
Sbjct: 248 SVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLKLAGQIHGWVL 307

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE 379
           RRGV+W+L IANSLIV+YS  GKLDQACWLFDHMP++DVVSWNSII AH KD +A+ YF 
Sbjct: 308 RRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRKDLKAITYFS 367

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M++  VLPD +TFVSLLSACAHLG VK GE LFS+M E YG+ P +EHYACMVNLYGRA
Sbjct: 368 RMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVNLYGRA 427

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           GLI+EAY +I ++MEFEA P VWGALLYACY H NV +G+ AA+ LFELEPDNEHNFELL
Sbjct: 428 GLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFELEPDNEHNFELL 487

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
           + IY N GRL+DVE+V +M+ DRG +
Sbjct: 488 MNIYRNVGRLEDVEKVRKMMADRGFD 513


>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 758

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/509 (63%), Positives = 406/509 (79%), Gaps = 2/509 (0%)

Query: 19  HCGSKNK-RSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQ 77
           H GS  K R  +Q +Q +Q    N   T  S+ K SPTPLL  +++  +T+L+ALDS+I 
Sbjct: 249 HLGSSLKPRHHQQLKQHRQNEYNNSGFTSLSFTKPSPTPLLIGKQSIHRTQLEALDSVIT 308

Query: 78  DLESSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
           DLE+S Q GI++ + E FASLLETCY L+A++HG+++H LIP  LLR N GISSKL+RLY
Sbjct: 309 DLEASAQKGISITEPEIFASLLETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLY 368

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A+ G  + AH+VFD+MS R +  F WNSLISGYAELG+YEDA+ALYFQM E+GV+PD+FT
Sbjct: 369 ASCGYAEVAHEVFDRMSKRESSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFT 428

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           FPRVLKAC G+G +++GE +H D V+ GFG+D  VLNALVDMYAKCGDIVKAR VFD I 
Sbjct: 429 FPRVLKACGGIGSVQIGEAIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIP 488

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG 316
           NKD +S+NSMLTGY+HHGLL EA DIFR M+ NG DPD VAISS+LA     + G Q+HG
Sbjct: 489 NKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSVLARVLSFKHGRQLHG 548

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI 376
           WV+RRG+EW+L +AN+LIV+YSK G+L QAC++FD M ++D VSWN+II AHS+D     
Sbjct: 549 WVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSRDSNGFK 608

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           YFEQM+     PD +TFVS+LS CA+ G V+ GERLFS+M ++YGI+P++EHYACMVNLY
Sbjct: 609 YFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKMEHYACMVNLY 668

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG+++EAYSMIV++MEFEA P VWGALLYACYLHGN  +GE +AQ+LFELEPDNEHNF
Sbjct: 669 GRAGMMEEAYSMIVQEMEFEAGPTVWGALLYACYLHGNTDIGEVSAQRLFELEPDNEHNF 728

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ELL++IY  A R +DVERV +MLVDRGLE
Sbjct: 729 ELLMRIYSKAKRAEDVERVRQMLVDRGLE 757


>gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g25270, chloroplastic; Flags: Precursor
 gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana]
 gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana]
 gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/501 (63%), Positives = 400/501 (79%), Gaps = 1/501 (0%)

Query: 26  RSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQN 85
           R  +Q +Q +Q    N   T  S+ K SPTPLL  +++  +T+L+ALDS+I DLE+S Q 
Sbjct: 26  RHHQQLKQHRQNQYNNNGFTSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQK 85

Query: 86  GITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           GI++ + E FASLLETCY L+A++HG+++H LIP  LLR N GISSKL+RLYA+ G  + 
Sbjct: 86  GISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEV 145

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH+VFD+MS R +  F WNSLISGYAELG+YEDA+ALYFQM E+GV+PD+FTFPRVLKAC
Sbjct: 146 AHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKAC 205

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            G+G +++GE +H D V+ GFG+D +VLNALV MYAKCGDIVKAR VFD I +KD +S+N
Sbjct: 206 GGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWN 265

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           SMLTGY+HHGLL EA DIFR M+ NG +PD VAISS+LA     + G Q+HGWV+RRG+E
Sbjct: 266 SMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGME 325

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
           W+L +AN+LIV+YSK G+L QAC++FD M ++D VSWN+II AHSK+   L YFEQM R 
Sbjct: 326 WELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRA 385

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
              PD +TFVS+LS CA+ G V+ GERLFS+M ++YGI P++EHYACMVNLYGRAG+++E
Sbjct: 386 NAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEE 445

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           AYSMIV++M  EA P VWGALLYACYLHGN  +GE AAQ+LFELEPDNEHNFELLI+IY 
Sbjct: 446 AYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYS 505

Query: 505 NAGRLDDVERVERMLVDRGLE 525
            A R +DVERV +M+VDRGLE
Sbjct: 506 KAKRAEDVERVRQMMVDRGLE 526


>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/487 (65%), Positives = 390/487 (80%)

Query: 38  ISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
           + + + +T  S+PKSSPTPLL + K F ++K+QALD+++ DLE+S+ NG+ +  E F+SL
Sbjct: 1   MGKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSL 60

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           LE CYQL+A+ HGI++HRLIPTNLLR+N GISSKLLRLYA+FG +++AHQVFD+M NR  
Sbjct: 61  LELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNF 120

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            AF WNSLISGYAELG YEDA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE VH
Sbjct: 121 SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVH 180

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
              VR GF  D FVLNALVDMY+KCG IV+AR VFD+I  KD++S+NSMLTGY  HGL  
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHF 240

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           EA DIF  MI  G++PD VA+S++L+N S ++    +HGWV+R GVEW+L IANSLIV+Y
Sbjct: 241 EALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMY 300

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           +K GKL++A WLF  MPQKD+VSWNSII AH    EAL YFE ME  GV PD +TFVSLL
Sbjct: 301 AKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLL 360

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           S CAHLG VK G +L+ +M  KYGI P +EHYACMVNLYGRAG+I+EAY +I + ME EA
Sbjct: 361 STCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEA 420

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
            P +WGALLYACYLH +V + E AA++LFELEPDNE NFELL+KIYGNAGR +D +RV+ 
Sbjct: 421 GPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKL 480

Query: 518 MLVDRGL 524
           M+ +RGL
Sbjct: 481 MMAERGL 487


>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/487 (65%), Positives = 389/487 (79%)

Query: 38  ISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
           + + + +T  S+PKSSPTPLL + K F ++K+QALD+++ DLE+S+ NG+ +  E F+SL
Sbjct: 1   MGKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSL 60

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           LE CYQL+A+ HGI++HRLIPTNLLR+N GISSKLLRLYA+FG +++AHQVFD+M NR  
Sbjct: 61  LELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNF 120

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            AF WNSLISGYAELG YEDA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE VH
Sbjct: 121 SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVH 180

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
              VR GF  D FVLNALVDMY+KCG IV+AR VFD+I  KD++S+NSMLTGY  HGL  
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHF 240

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           EA DIF  MI  G++PD VA+S++L+N S ++    +HGWV+R GVEW+L IANSLIV+Y
Sbjct: 241 EALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMY 300

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           +K GKL++A WLF  MPQKD+VSWNSII AH    EAL YFE ME  GV PD +TFVSLL
Sbjct: 301 AKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLL 360

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           S CAHLG VK G  L+ +M  KYGI P +EHYACMVNLYGRAG+I+EAY +I + ME EA
Sbjct: 361 STCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEA 420

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
            P +WGALLYACYLH +V + E AA++LFELEPDNE NFELL+KIYGNAGR +D +RV+ 
Sbjct: 421 GPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKL 480

Query: 518 MLVDRGL 524
           M+ +RGL
Sbjct: 481 MMAERGL 487


>gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa]
 gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/442 (70%), Positives = 364/442 (82%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ GI + T+ F+SLLETCY+L A+E G+K+HRLIP NLLR+N GISSKL+RLY++ G +
Sbjct: 1   MEKGIRIDTQIFSSLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDV 60

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + AHQVFD+M  R   AFPWNSLI+GY E G YEDA+ALYFQMEEEGVEPDQFTFPRVLK
Sbjct: 61  EVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQFTFPRVLK 120

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC G+GLIR+GE VH D VR GF  DGFVLNALVDMYAKCGDIVKAR +FD+I  KD IS
Sbjct: 121 ACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVKARRIFDKIDCKDSIS 180

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           +NSMLTGYI HGL+ EA   F  M+ +G + D VA+S+ILAN S   +  Q+HGW++RRG
Sbjct: 181 WNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTILANVSSFEVAVQIHGWIVRRG 240

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           +EWD  IANSLI VYS   KLD+A WLFDHMP+KD+VSWNSII AH KD +AL YFE ME
Sbjct: 241 MEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDIVSWNSIISAHCKDLKALTYFELME 300

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           RDG LPD +TFVSLLSACAHLG VK GERLFS+M  KY I+P +EHYACMVNLYGRAGLI
Sbjct: 301 RDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIMEHYACMVNLYGRAGLI 360

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           +EAY++I ++MEFEA P VWGALLY+CYLH NV  GE AAQ LF+LEPDNEHNFELL+KI
Sbjct: 361 NEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFDLEPDNEHNFELLMKI 420

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y NAGRL+D ERV +M+VDRGL
Sbjct: 421 YDNAGRLEDAERVRKMMVDRGL 442


>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic-like [Glycine max]
          Length = 526

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/499 (62%), Positives = 400/499 (80%), Gaps = 6/499 (1%)

Query: 29  KQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT 88
           KQRR + Q+  RN +    S+PK   TPLL + +  PKTKL+AL+ +++DLE+SV+ GI 
Sbjct: 33  KQRRLESQE-RRNGL----SFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIK 87

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +  E +ASLLETCY+ +A+ HGI++HRLIPT+LL KN GISSKLLRLYA+ G +D+AH +
Sbjct: 88  IDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDL 147

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FDQM+ R   AFPWNSLISGYA++G Y++AIALYFQM EEGVE D FTFPRVLK CAG+G
Sbjct: 148 FDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIG 207

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            ++VGE+VH  A+R GF  DGF+LNALVDMY+KCGDIVKAR VFD++ ++D +S+NSMLT
Sbjct: 208 SVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLT 267

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
            Y+HHGL V+A +IFR M+L G +PD V+IS++L   S L +G Q+HGWV+ +G EW+L 
Sbjct: 268 AYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLS 327

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
           IANSLI++YS  G+L++A W+F+ MP++DVVSWNSII AH K  EAL +FEQME  GV P
Sbjct: 328 IANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQP 387

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TFVS+LSACA+LG +K GERLF++M  KY I P +EHY CMVNLYGRAGLI +AYS+
Sbjct: 388 DKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCMVNLYGRAGLIKKAYSI 447

Query: 449 IVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
           IV+ +  EA+ P +WGALLYAC++HG+  +GE AA  LF+LEPDNEHNF LL++IY NAG
Sbjct: 448 IVDGIGTEAAGPTLWGALLYACFMHGDATIGEIAANWLFDLEPDNEHNFVLLMRIYENAG 507

Query: 508 RLDDVERVERMLVDRGLEF 526
           RL+D+ERV  MLVDRGL++
Sbjct: 508 RLEDMERVRMMLVDRGLDY 526


>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
          Length = 481

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/433 (61%), Positives = 344/433 (79%), Gaps = 5/433 (1%)

Query: 29  KQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT 88
           KQRR + Q+  RN +    S+PK   TPLL + +  PKTKL+AL+ +++DLE+SV+ GI 
Sbjct: 33  KQRRLESQE-RRNGL----SFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIK 87

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +  E +ASLLETCY+ +A+ HGI++HRLIPT+LL KN GISSKLLRLYA+ G +D+AH +
Sbjct: 88  IDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDL 147

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FDQM+ R   AFPWNSLISGYA++G Y++AIALYFQM EEGVE D FTFPRVLK CAG+G
Sbjct: 148 FDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIG 207

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            ++VGE+VH  A+R GF  DGF+LNALVDMY+KCGDIVKAR VFD++ ++D +S+NSMLT
Sbjct: 208 SVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLT 267

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
            Y+HHGL V+A +IFR M+L G +PD V+IS++L   S L +G Q+HGWV+ +G EW+L 
Sbjct: 268 AYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLS 327

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
           IANSLI++YS  G+L++A W+F+ MP++DVVSWNSII AH K  EAL +FEQME  GV P
Sbjct: 328 IANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQP 387

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TFVS+LSACA+LG +K GERLF++M  KY I P +EHY CMVNLYGRAGLI +AYS+
Sbjct: 388 DKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCMVNLYGRAGLIKKAYSI 447

Query: 449 IVEKMEFEASPVV 461
           IV+ +  EA+ V+
Sbjct: 448 IVDGIGTEAAGVL 460


>gi|255539733|ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550046|gb|EEF51533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 461

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/406 (61%), Positives = 317/406 (78%), Gaps = 3/406 (0%)

Query: 8   PSSFHTSLVIIHCGSKNKRSRKQR---RQKQQQISRNRITTFSSYPKSSPTPLLTNQKAF 64
           P   HT  +I+H  S +K+ RKQR   R ++    +NR     S+P  SPTPLL N   +
Sbjct: 7   PQILHTPSMILHYASSSKKRRKQRQLNRIQKNDFYQNRNANGLSFPVPSPTPLLINLNTY 66

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
            +TKLQALD +I+DLESS+  GI + T+  +SLLETCY+L +++HG+++HRLIPT++LRK
Sbjct: 67  TQTKLQALDDVIKDLESSIGKGIKIDTQIISSLLETCYRLNSIDHGMRIHRLIPTSILRK 126

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N G+SSKLLRLYA+ G +DEAHQ+FD+MSNR   AF WNSLI+GY+ELG YEDAIALYFQ
Sbjct: 127 NTGVSSKLLRLYASCGYMDEAHQMFDEMSNRDESAFAWNSLIAGYSELGLYEDAIALYFQ 186

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+EE VEPD+FTFPRVLKAC GLGLI+VGE VH D +R GF  D F  NALVDMYAKCGD
Sbjct: 187 MDEEYVEPDEFTFPRVLKACGGLGLIQVGEAVHRDLIRLGFANDRFASNALVDMYAKCGD 246

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           IVKAR++F+++ +KD +S+NSMLTGY+ HGL++EAF   R M+ +G + D VAISS+LAN
Sbjct: 247 IVKARSIFEKMASKDSVSWNSMLTGYVRHGLIIEAFHTGRRMLQDGLELDSVAISSLLAN 306

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S  ++G Q+HGW+LRRG++WDL IANSLIV+YS +GKL Q  WLFD+M ++DVVSWNSI
Sbjct: 307 VSSFKLGVQIHGWILRRGMQWDLSIANSLIVMYSSNGKLVQTRWLFDNMQERDVVSWNSI 366

Query: 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           I AH KD + L YFE+ME  G  PD++TFVS LSACAHLG V+ GE
Sbjct: 367 ISAHCKDPQVLAYFERMENSGAFPDNITFVSALSACAHLGLVRDGE 412



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 20/150 (13%)

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLF-----SVMVEKYGISPRVEHYACMVNLYGRA 439
           G+  D     SLL  C  L S+  G R+      S++ +  G+S +      ++ LY   
Sbjct: 88  GIKIDTQIISSLLETCYRLNSIDHGMRIHRLIPTSILRKNTGVSSK------LLRLYASC 141

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEH 494
           G +DEA+ M  E    + S   W +L+     +  + + E A    F++     EPD E 
Sbjct: 142 GYMDEAHQMFDEMSNRDESAFAWNSLIAG---YSELGLYEDAIALYFQMDEEYVEPD-EF 197

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            F  ++K  G  G +   E V R L+  G 
Sbjct: 198 TFPRVLKACGGLGLIQVGEAVHRDLIRLGF 227


>gi|27573363|gb|AAO20081.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108712148|gb|ABF99943.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 515

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/501 (40%), Positives = 298/501 (59%), Gaps = 10/501 (1%)

Query: 30  QRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV 89
           QRR++    +R R      +P S     LT + A P      LD ++ DL S  +  +  
Sbjct: 15  QRRRRSTAPARRRGPPSRRHPHSGAA--LTLRAAPPPATQPTLDRVLSDLGSHPR--LLT 70

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
                + L           +  +L RL+  +LLR+   ++ +LL L+A+ GL+  AH +F
Sbjct: 71  PDLLDSLLAALPLHPSPRRNLARLRRLLSVSLLRRYPALARRLLHLHASLGLVSYAHHLF 130

Query: 150 DQMSNRTAF--AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           D +    A   AFPWN LI+GYA LG +EDA+ALY QMEEE V  D+FTF   L+ACAG+
Sbjct: 131 DHLLPARAREDAFPWNCLIAGYARLGRHEDALALYLQMEEETVPRDRFTFTSALQACAGV 190

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G + +G  +H D VR G   D  V +ALVD+YA  GD+ +A  VFD + ++D +S+N ML
Sbjct: 191 GSVELGHAIHRDVVRAGLASDVPVCDALVDLYATFGDVRRALQVFDAMPDRDGVSWNIML 250

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL----RIGAQVHGWVLRRGV 323
            G + HGL  +A +++R M+    +PD + +S++L+   L+    + G ++H W +R G+
Sbjct: 251 AGCLRHGLSQQALELWRRMLREEHEPDSITLSTMLSILPLVCDNGKWGLEIHAWAIRHGL 310

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
           E +L +AN+LI +YS   +   A  +F+ M  +D+ SWN+II AH +D+  L+ F +M  
Sbjct: 311 ETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSWNAIISAHLQDYRILMIFRRMVD 370

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD  TF  + SAC +LG V+ G RLFS M  +Y I P +E Y CMVN+ G+AG+I 
Sbjct: 371 SGMRPDETTFALVFSACDNLGLVEGGMRLFSEMENEYRIPPTMEQYTCMVNMLGKAGMIH 430

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EAY  + ++   +    V  ALL AC +H N  +GE  A++L ELEPDNEHNF  L++IY
Sbjct: 431 EAYEFMSKRKPLDNEQTVLRALLQACLMHRNARVGEIIAKRLIELEPDNEHNFVKLMEIY 490

Query: 504 GNAGRLDDVERVERMLVDRGL 524
            N GRL + E+V++ + DRGL
Sbjct: 491 QNVGRLVEAEKVKKTMRDRGL 511


>gi|115456651|ref|NP_001051926.1| Os03g0852700 [Oryza sativa Japonica Group]
 gi|113550397|dbj|BAF13840.1| Os03g0852700, partial [Oryza sativa Japonica Group]
          Length = 506

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/501 (40%), Positives = 298/501 (59%), Gaps = 10/501 (1%)

Query: 30  QRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV 89
           QRR++    +R R      +P S     LT + A P      LD ++ DL S  +  +  
Sbjct: 6   QRRRRSTAPARRRGPPSRRHPHSGAA--LTLRAAPPPATQPTLDRVLSDLGSHPR--LLT 61

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
                + L           +  +L RL+  +LLR+   ++ +LL L+A+ GL+  AH +F
Sbjct: 62  PDLLDSLLAALPLHPSPRRNLARLRRLLSVSLLRRYPALARRLLHLHASLGLVSYAHHLF 121

Query: 150 DQMSNRTAF--AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           D +    A   AFPWN LI+GYA LG +EDA+ALY QMEEE V  D+FTF   L+ACAG+
Sbjct: 122 DHLLPARAREDAFPWNCLIAGYARLGRHEDALALYLQMEEETVPRDRFTFTSALQACAGV 181

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G + +G  +H D VR G   D  V +ALVD+YA  GD+ +A  VFD + ++D +S+N ML
Sbjct: 182 GSVELGHAIHRDVVRAGLASDVPVCDALVDLYATFGDVRRALQVFDAMPDRDGVSWNIML 241

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL----RIGAQVHGWVLRRGV 323
            G + HGL  +A +++R M+    +PD + +S++L+   L+    + G ++H W +R G+
Sbjct: 242 AGCLRHGLSQQALELWRRMLREEHEPDSITLSTMLSILPLVCDNGKWGLEIHAWAIRHGL 301

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
           E +L +AN+LI +YS   +   A  +F+ M  +D+ SWN+II AH +D+  L+ F +M  
Sbjct: 302 ETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSWNAIISAHLQDYRILMIFRRMVD 361

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD  TF  + SAC +LG V+ G RLFS M  +Y I P +E Y CMVN+ G+AG+I 
Sbjct: 362 SGMRPDETTFALVFSACDNLGLVEGGMRLFSEMENEYRIPPTMEQYTCMVNMLGKAGMIH 421

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EAY  + ++   +    V  ALL AC +H N  +GE  A++L ELEPDNEHNF  L++IY
Sbjct: 422 EAYEFMSKRKPLDNEQTVLRALLQACLMHRNARVGEIIAKRLIELEPDNEHNFVKLMEIY 481

Query: 504 GNAGRLDDVERVERMLVDRGL 524
            N GRL + E+V++ + DRGL
Sbjct: 482 QNVGRLVEAEKVKKTMRDRGL 502


>gi|125588673|gb|EAZ29337.1| hypothetical protein OsJ_13404 [Oryza sativa Japonica Group]
          Length = 557

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 178/404 (44%), Positives = 260/404 (64%), Gaps = 6/404 (1%)

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAF--AFPWNSLISGYAELGEYEDAIALYFQ 184
            ++ +LL L+A+ GL+  AH +FD +    A   AFPWN LI+GYA LG +EDA+ALY Q
Sbjct: 150 ALARRLLHLHASLGLVSYAHHLFDHLLPARAREDAFPWNCLIAGYARLGRHEDALALYLQ 209

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           MEEE V  D+FTF   L+ACAG+G + +G  +H D VR G   D  V +ALVD+YA  GD
Sbjct: 210 MEEETVPRDRFTFTSALQACAGVGSVELGHAIHRDVVRAGLASDVPVCDALVDLYATFGD 269

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + +A  VFD + ++D +S+N ML G + HGL  +A +++R M+    +PD + +S++L+ 
Sbjct: 270 VRRALQVFDAMPDRDGVSWNIMLAGCLRHGLSQQALELWRRMLREEHEPDSITLSTMLSI 329

Query: 305 ASLL----RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             L+    + G ++H W +R G+E +L +AN+LI +YS   +   A  +F+ M  +D+ S
Sbjct: 330 LPLVCDNGKWGLEIHAWAIRHGLETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQS 389

Query: 361 WNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           WN+II AH +D+  L+ F +M   G+ PD  TF  + SAC +LG V+ G RLFS M  +Y
Sbjct: 390 WNAIISAHLQDYRILMIFRRMVDSGMRPDETTFALVFSACDNLGLVEGGMRLFSEMENEY 449

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
            I P +E Y CMVN+ G+AG+I EAY  + ++   +    V  ALL AC +H N  +GE 
Sbjct: 450 RIPPTMEQYTCMVNMLGKAGMIHEAYEFMSKRKPLDNEQTVLRALLQACLMHRNARVGEI 509

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A++L ELEPDNEHNF  L++IY N GRL + E+V++ + DRGL
Sbjct: 510 IAKRLIELEPDNEHNFVKLMEIYQNVGRLVEAEKVKKTMRDRGL 553


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/438 (42%), Positives = 275/438 (62%), Gaps = 10/438 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +ASLL++C   KA+E G +LH  I    +  N  +++KL+ LY     +  AH +FD++S
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R  F   WN +I GYA  G YE AI+LY+QM + G+ PD+FTFP VLKAC+ L  +  G
Sbjct: 64  KRNLFL--WNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG 121

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +K+H D +R G   D FV  AL+DMYAKCG +  AR VFD+I  +D++ +NSML  Y  +
Sbjct: 122 KKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQN 181

Query: 274 GLLVEAFDIFRGMILNGFDP-DPVAISSILANA--SLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   E+  + R M  NG  P +   + SI A+A   LL  G ++HG+  R G E +  + 
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVK 241

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
            +L+ +Y+K G ++ A  LF+ + +K VVSWN++I     H   +EAL  F++M +  VL
Sbjct: 242 TALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVL 300

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PDH+TFV +L+AC+H G +  G+  F  M+  + I P V+HY CM++L G  G ++EAY 
Sbjct: 301 PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYK 360

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
           +I+E M  E    VWGALL++C +HGNV MGE A +KL ELEPD+  N+ +L  +Y  AG
Sbjct: 361 LIME-MRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAG 419

Query: 508 RLDDVERVERMLVDRGLE 525
           + D V R+  +++++GL+
Sbjct: 420 KWDGVARLRDLMMNKGLK 437



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 179/365 (49%), Gaps = 46/365 (12%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  +L+ C  L A+E G K+H+ +  + L  +  + + L+ +YA  G ++ A
Sbjct: 97  GLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESA 156

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            QVFD++  R      WNS+++ Y++ G+ ++++AL   M   G++P + TF   + A A
Sbjct: 157 RQVFDKIDERDVVC--WNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASA 214

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             GL+  G+++H  + R GF  +  V  AL+DMYAK G +  AR++F+ +  K ++S+N+
Sbjct: 215 DNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNA 274

Query: 266 MLTGYIHHGLLVEAFDIF---RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           M+TGY  HG   EA D+F   +G +L    PD +    +LA  S        HG +L   
Sbjct: 275 MITGYAMHGHANEALDLFKEMKGKVL----PDHITFVGVLAACS--------HGGLL--- 319

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH--AH-SKDHEALIYFE 379
                            +GK+     + D      V  +  +I    H  +  EA     
Sbjct: 320 ----------------NEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIM 363

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGR 438
           +M    V PD   + +LL +C   G+V++GE     +VE   + P    +Y  + N+Y +
Sbjct: 364 EMR---VEPDAGVWGALLHSCKIHGNVEMGELALEKLVE---LEPDDGGNYVILSNMYAQ 417

Query: 439 AGLID 443
           AG  D
Sbjct: 418 AGKWD 422



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NG+     TF   +        +  G +LH     +    N  + + L+ +YA  G ++ 
Sbjct: 197 NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNV 256

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F+ +  +   +  WN++I+GYA  G   +A+ L+ +M+ + V PD  TF  VL AC
Sbjct: 257 ARSLFELLEEKRVVS--WNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAAC 313

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
           +  GL+  G K+H  ++   F     V     ++D+   CG + +A
Sbjct: 314 SHGGLLNEG-KMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 276/449 (61%), Gaps = 13/449 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NGI   + T  S++  C  L A+E G ++H     + +  +  + + L+ +YA  G ++ 
Sbjct: 215 NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNT 274

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH++F++M  R   +  WN++I GY+   ++ +A+A + +M+  G++P+  T   VL AC
Sbjct: 275 AHKLFERMPIRDVAS--WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPAC 332

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L  +  G+++H  A+R GF  +  V NALV+MYAKCG++  A  +F+R+  K+++++N
Sbjct: 333 AHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWN 392

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++++GY  HG   EA  +F  M   G  PD  AI S+L   A+   L  G Q+HG+ +R 
Sbjct: 393 AIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS 452

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI-----IHAHSKDHEALI 376
           G E ++ +   L+ +Y+K G ++ A  LF+ MP++DVVSW ++     IH H +D  AL 
Sbjct: 453 GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGED--ALA 510

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M+  G   DH+ F ++L+AC+H G V  G + F  M   YG++P++EHYAC+V+L 
Sbjct: 511 LFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLL 570

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +DEA + I++ M  E    VWGALL AC +H N+ +GE AA+ LFEL+PDN   +
Sbjct: 571 GRAGHLDEA-NGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYY 629

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  IY  A R +DV ++ +M+ ++G++
Sbjct: 630 VLLSNIYAEAQRWEDVAKLRKMMKEKGVK 658



 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 245/453 (54%), Gaps = 29/453 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI      F S+++ C     ++ G K+H  I       +  + + L  +Y   G ++
Sbjct: 113 RTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLE 172

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A QVFD+M  R   +  WN++I+GY++ G+  +A+AL+ +M+  G++P+  T   V+  
Sbjct: 173 NARQVFDRMPKRDVVS--WNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L  +  G+++H  A+R G   D  V+N LV+MYAKCG++  A  +F+R+  +D+ S+
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+++ GY  +    EA   F  M + G  P+ + + S+L   A+   L  G Q+HG+ +R
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR 350

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G E +  + N+L+ +Y+K G ++ A  LF+ MP+K+VV+WN+II  +S+    HEAL  
Sbjct: 351 SGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALAL 410

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M+  G+ PD    VS+L ACAH  +++ G+++    + + G    V     +V++Y 
Sbjct: 411 FIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTI-RSGFESNVVVGTGLVDIYA 469

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA---QKLFELEPDNEH 494
           + G ++ A  +  E+M  E   V W  ++ A  +HG+   GE A     K+ E     +H
Sbjct: 470 KCGNVNTAQKLF-ERMP-EQDVVSWTTMILAYGIHGH---GEDALALFSKMQETGTKLDH 524

Query: 495 -NFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
             F  ++    +AG           LVD+GL++
Sbjct: 525 IAFTAILTACSHAG-----------LVDQGLQY 546



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 186/322 (57%), Gaps = 9/322 (2%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           A  W   I GY + G +  A+ LY+QM+  G+ PD+  F  V+KAC     ++ G KVH 
Sbjct: 85  AVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHE 144

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
           D +  GF  D  V  AL  MY KCG +  AR VFDR+  +D++S+N+++ GY  +G   E
Sbjct: 145 DIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYE 204

Query: 279 AFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A  +F  M +NG  P+    V++  + A+   L  G Q+H + +R G+E D+ + N L+ 
Sbjct: 205 ALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVN 264

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLT 392
           +Y+K G ++ A  LF+ MP +DV SWN+II  +   S+ HEAL +F +M+  G+ P+ +T
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
            VS+L ACAHL +++ G+++    +     S  V   A +VN+Y + G ++ AY +  E+
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNA-LVNMYAKCGNVNSAYKLF-ER 382

Query: 453 MEFEASPVVWGALLYACYLHGN 474
           M  + + V W A++     HG+
Sbjct: 383 MP-KKNVVAWNAIISGYSQHGH 403


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/438 (39%), Positives = 261/438 (59%), Gaps = 10/438 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +ASLLE+C   KA+E G +LH  +    +  N  +++KL+  Y+    +  AH +FD++ 
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
               F   WN LI  YA  G +E AI+LY QM E G++PD FT P VLKAC+ L  I  G
Sbjct: 121 KGNLFL--WNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEG 178

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H   +R G+  D FV  ALVDMYAKCG +V AR VFD+I ++D + +NSML  Y  +
Sbjct: 179 RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQN 238

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   E+  +   M   G  P    + +++   A+ + L  G ++HG+  R G +++  + 
Sbjct: 239 GHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVK 298

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
            +LI +Y+K G +  AC LF+ + +K VVSWN+II     H    EAL  FE+M ++   
Sbjct: 299 TALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-Q 357

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PDH+TFV  L+AC+    +  G  L+++MV    I+P VEHY CMV+L G  G +DEAY 
Sbjct: 358 PDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYD 417

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
           +I  +M+      VWGALL +C  HGNV + E A +KL ELEPD+  N+ +L  +Y  +G
Sbjct: 418 LI-RQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSG 476

Query: 508 RLDDVERVERMLVDRGLE 525
           + + V R+ ++++D+G++
Sbjct: 477 KWEGVARLRQLMIDKGIK 494



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 178/362 (49%), Gaps = 40/362 (11%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+     T   +L+ C  L  +  G  +H  +  +   ++  + + L+ +YA  G +
Sbjct: 151 LEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCV 210

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A  VFD++ +R A    WNS+++ YA+ G  +++++L  +M  +GV P + T   V+ 
Sbjct: 211 VDARHVFDKIVDRDAVL--WNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVIS 268

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           + A +  +  G ++H    R GF ++  V  AL+DMYAKCG +  A  +F+R+  K ++S
Sbjct: 269 SSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVS 328

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           +N+++TGY  HGL VEA D+F  M+     PD +     LA  S   LL  G  ++  ++
Sbjct: 329 WNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMV 387

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE 379
           R       C  N  +  Y+    +D    L  H  Q D               EA     
Sbjct: 388 RD------CRINPTVEHYT--CMVD----LLGHCGQLD---------------EAYDLIR 420

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGR 438
           QM+   V+PD   + +LL++C   G+V++ E     ++E   + P    +Y  + N+Y +
Sbjct: 421 QMD---VMPDSGVWGALLNSCKTHGNVELAEVALEKLIE---LEPDDSGNYVILANMYAQ 474

Query: 439 AG 440
           +G
Sbjct: 475 SG 476


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 188/483 (38%), Positives = 273/483 (56%), Gaps = 17/483 (3%)

Query: 53  SPTPLLTN---QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEH 109
           SP P  T+   Q    +T L+A+ S       S    +T     +ASLL++C   KA++ 
Sbjct: 36  SPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAEST--CLTPTYSNYASLLQSCIARKAIKP 93

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G +LH  +       +  I++KL+ LY     +  A  +FD++     F   WN LI GY
Sbjct: 94  GKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFL--WNVLIRGY 151

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A  G YE A+ LY+QM + G+ PD FTFP VLKACA L  I  G ++H   V+ G+  D 
Sbjct: 152 AWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDV 211

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV  AL+DMYAKCG +  AR VFD+I  +D + +NSML  Y  +G       +   M+L 
Sbjct: 212 FVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLT 271

Query: 290 GFDPDP----VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           G  P       AIS+   NA+L + G ++HG   R+  E    +  +L+ +Y+K G +  
Sbjct: 272 GLRPTEATLVTAISASADNAALPQ-GRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRV 330

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  LF+ +  K VVSWN++I     H    EAL  FE+M R    PDH+TFV +LSAC+H
Sbjct: 331 ARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAK-PDHITFVGVLSACSH 389

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G ++ G   F  M+  Y I P V+HY CMV+L G +G +DEAY++I++ M+      VW
Sbjct: 390 GGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQ-MKVLPDSGVW 448

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           GALL +C +H NV +GE A ++L ELEPD+  N+ +L  IY  AG+ + V ++ +++ DR
Sbjct: 449 GALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508

Query: 523 GLE 525
            L+
Sbjct: 509 RLK 511


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 179/468 (38%), Positives = 275/468 (58%), Gaps = 23/468 (4%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QAL  + Q+   S Q        T+  L+  C    ++  G+++HR I  N   ++  ++
Sbjct: 64  QALRVLSQESSPSQQ--------TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLA 115

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           +KL+ +Y+  G +D A +VFD+   RT +   WN+L       G  E+ + LY++M   G
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYV--WNALFRALTLAGHGEEVLGLYWKMNRIG 173

Query: 190 VEPDQFTFPRVLKACAGLGL----IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           VE D+FT+  VLKAC         +  G+++H    R G+    +++  LVDMYA+ G +
Sbjct: 174 VESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCV 233

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSIL- 302
             A  VF+ +  ++++S+++M+  Y  +G   EA   FR M+    D  P+ V + S+L 
Sbjct: 234 DYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQ 293

Query: 303 ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
           A ASL  L  G  +HG++LRRG++  L + ++L+ +Y + GKLD    +FD M  +DVVS
Sbjct: 294 ACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVS 353

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WNS+I +   H    +A+  FE+M  +G  P  +TFVS+L AC+H G V+ G+RLF  M 
Sbjct: 354 WNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMW 413

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
             +GI P+VEHYACMV+L GRA  +DEA  M V+ M  E  P VWG+LL +C +HGNV +
Sbjct: 414 RDHGIKPQVEHYACMVDLLGRANRLDEAAKM-VQDMRTEPGPKVWGSLLGSCRIHGNVEL 472

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            E A+++LF LEP N  N+ LL  IY  A   D+V+RV+++L  RGL+
Sbjct: 473 AERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 184/410 (44%), Gaps = 55/410 (13%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N LI    + G+ + A+ +  Q       P Q T+  ++  C     +  G +VH   + 
Sbjct: 50  NQLIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRHILD 105

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   D F+   L+ MY+  G +  AR VFD+   + +  +N++       G   E   +
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 283 FRGMILNGFDPDPVAISSIL-------ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           +  M   G + D    + +L         A  L  G ++H  + RRG    + I  +L+ 
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVD 225

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM--ERDGVLPDH 390
           +Y++ G +D A ++F+ MP ++VVSW+++I  ++K+    EAL  F +M  E     P+ 
Sbjct: 226 MYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNS 285

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID------- 443
           +T VS+L ACA L +++ G RL    + + G+   +   + +V +YGR G +D       
Sbjct: 286 VTMVSVLQACASLAALEQG-RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFD 344

Query: 444 ------------------------EAYSMIVEKMEFEAS--PVVWGALLYACYLHGNVCM 477
                                   +A  +  E +   AS  PV + ++L AC   G V  
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404

Query: 478 GETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDRG 523
           G+   + ++    ++P  EH +  ++ + G A RLD+  + V+ M  + G
Sbjct: 405 GKRLFESMWRDHGIKPQVEH-YACMVDLLGRANRLDEAAKMVQDMRTEPG 453


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 177/477 (37%), Positives = 270/477 (56%), Gaps = 39/477 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C ++ A + G ++H  +    L  +  + + L+ +YA  G +  A
Sbjct: 127 GVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYA 186

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
             VF + S R A +F                              WN++I+GYA+ G +E
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+A + +M+   V P++ T   VL ACA  G + +G  V       G G +  ++NAL+
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           DMY+KCGD+ KAR +F+ I  KD+IS+N M+ GY H     EA  +FR M  +  +P+ V
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
              SIL   A    L +G  +H ++ ++  G+  +  +  SLI +Y+K G ++ A  +F 
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLT-NTSLWTSLIDMYAKCGNIEAAKQVFA 425

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  K + SWN++I     H   + AL  F QM  +G  PD +TFV +LSAC+H G V++
Sbjct: 426 GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVEL 485

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G + FS MVE Y ISP+++HY CM++L GRAGL DEA +++ + ME +    +WG+LL A
Sbjct: 486 GRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM-KNMEMKPDGAIWGSLLGA 544

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE AA+ LFELEP+N   + LL  IY  AGR DDV R+   L D+G++
Sbjct: 545 CRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 222/445 (49%), Gaps = 48/445 (10%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA--TFGLIDEAH 146
           +Q     +LL TC   K+ ++  ++H  I    L   +   SKL+   A   FG +  A 
Sbjct: 30  LQNHPSLTLLSTC---KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYAL 86

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            +F+ +     F   WN++I G +       AI  Y +M   GVEP+ +TFP +LK+CA 
Sbjct: 87  LLFESIEQPNQFI--WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV-------------------- 246
           +G  + G+++H   ++ G   D FV  +L++MYA+ G++                     
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 247 -----------KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
                       AR +F+ I  +D +S+N+M+ GY   G   EA   F+ M      P+ 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
             + ++L   A +  L +G  V  W+   G+  +L + N+LI +YSK G LD+A  LF+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 353 MPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           + +KD++SWN +I  +S  +   EAL  F +M++  V P+ +TFVS+L ACA+LG++ +G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           + + + + +K+        +  ++++Y + G I EA   +   M+   S   W A++   
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI-EAAKQVFAGMK-PKSLGSWNAMISGL 442

Query: 470 YLHGNVCMGETAAQKLFE--LEPDN 492
            +HG+  M     +++ +   EPD+
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDD 467


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 177/477 (37%), Positives = 270/477 (56%), Gaps = 39/477 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C ++ A + G ++H  +    L  +  + + L+ +YA  G +  A
Sbjct: 127 GVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYA 186

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
             VF + S R A +F                              WN++I+GYA+ G +E
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+A + +M+   V P++ T   VL ACA  G + +G  V       G G +  ++NAL+
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           DMY+KCGD+ KAR +F+ I  KD+IS+N M+ GY H     EA  +FR M  +  +P+ V
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
              SIL   A    L +G  +H ++ ++  G+  +  +  SLI +Y+K G ++ A  +F 
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLT-NTSLWTSLIDMYAKCGNIEAAKQVFA 425

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  K + SWN++I     H   + AL  F QM  +G  PD +TFV +LSAC+H G V++
Sbjct: 426 GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVEL 485

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G + FS MVE Y ISP+++HY CM++L GRAGL DEA +++ + ME +    +WG+LL A
Sbjct: 486 GRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM-KNMEMKPDGAIWGSLLGA 544

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE AA+ LFELEP+N   + LL  IY  AGR DDV R+   L D+G++
Sbjct: 545 CRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 221/445 (49%), Gaps = 48/445 (10%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA--TFGLIDEAH 146
           +Q     +LL TC   K+ ++  ++H  I    L   +   SKL+   A   FG +  A 
Sbjct: 30  LQNHPSLTLLSTC---KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYAL 86

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            +F+ +     F   WN++I G +       AI  Y +M   GVEP+ +TFP +LK+CA 
Sbjct: 87  LLFESIEQPNQFI--WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV-------------------- 246
           +G  + G+++H   ++ G   D FV  +L++MYA+ G++                     
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 247 -----------KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
                       AR +F+ I  +D +S+N+M+ GY   G   EA   F+ M      P+ 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 296 ---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              V + S  A +  L +G  V  W+   G+  +L + N+LI +YSK G LD+A  LF+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 353 MPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           + +KD++SWN +I  +S  +   EAL  F +M++  V P+ +TFVS+L ACA+LG++ +G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           + + + + +K+        +  ++++Y + G I EA   +   M+   S   W A++   
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI-EAAKQVFAGMK-PKSLGSWNAMISGL 442

Query: 470 YLHGNVCMGETAAQKLFE--LEPDN 492
            +HG+  M     +++ +   EPD+
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDD 467


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 277/474 (58%), Gaps = 24/474 (5%)

Query: 73  DSIIQDL--ESSVQNGITV-------QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLR 123
           + +IQ L  E  ++  I V         +T+  L+  C    ++   +++HR I  N   
Sbjct: 50  NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSD 109

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           ++  +++KL+ +Y+  G +D A +VFD+   RT +   WN+L       G  E+ + LY+
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYV--WNALFRALTLAGHGEEVLGLYW 167

Query: 184 QMEEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           +M   GVE D+FT+  VLKAC      +  +  G+++H    R G+    +++  LVDMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY 227

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD--PDPVA 297
           A+ G +  A  VF  +  ++++S+++M+  Y  +G   EA   FR M+    D  P+ V 
Sbjct: 228 ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287

Query: 298 ISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           + S+L A ASL  L  G  +HG++LRRG++  L + ++L+ +Y + GKL+    +FD M 
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            +DVVSWNS+I +   H    +A+  FE+M  +G  P  +TFVS+L AC+H G V+ G+R
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           LF  M   +GI P++EHYACMV+L GRA  +DEA  M V+ M  E  P VWG+LL +C +
Sbjct: 408 LFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM-VQDMRTEPGPKVWGSLLGSCRI 466

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           HGNV + E A+++LF LEP N  N+ LL  IY  A   D+V+RV+++L  RGL+
Sbjct: 467 HGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 265/448 (59%), Gaps = 10/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++GI     TF S+L  C    A++ G ++   I       +  + + LL +YA  G +
Sbjct: 405 IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +AH+VF+++S +   A  WN++I+ Y +  +Y++A+A +  + +EG++P+  TF  +L 
Sbjct: 465 KDAHRVFEKISKQNVVA--WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C     + +G+ VH   ++ G   D  V NALV M+  CGD++ A+ +F+ +  +DL+S
Sbjct: 523 VCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS 582

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+++ G++ HG    AFD F+ M  +G  PD +  + +L   A+   L  G ++H  + 
Sbjct: 583 WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALIT 642

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
               + D+ +   LI +Y+K G ++ A  +F  +P+K+V SW S+I     H +  EAL 
Sbjct: 643 EAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALE 702

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM+++GV PD +TFV  LSACAH G ++ G   F  M E + I PR+EHY CMV+L+
Sbjct: 703 LFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLF 761

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAGL++EA   I+ KM+ E    VWGALL AC +H NV + E AAQK  EL+P++   F
Sbjct: 762 GRAGLLNEAVEFII-KMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVF 820

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  IY  AG   +V ++ ++++DRG+
Sbjct: 821 VILSNIYAAAGMWKEVAKMRKVMLDRGV 848



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 254/468 (54%), Gaps = 16/468 (3%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K    +  +Q LE    + I +  +T+++LL+ C + K +  G +++  I  + ++ + 
Sbjct: 86  SKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDI 145

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            + + L+ +YA  G    A Q+FD M  +  ++  WN L+ GY + G YE+A  L+ QM 
Sbjct: 146 FMWNTLINMYAKCGNTISAKQIFDDMREKDVYS--WNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           ++ V+PD+ TF  +L ACA    +  G +++   ++ G+  D FV  AL++M+ KCGDI 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA--- 303
            A  VFD +  +DL+++ SM+TG   HG   +A ++F+ M   G  PD VA  S+L    
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +   L  G +VH  +   G + ++ +  +++ +Y+K G ++ A  +FD +  ++VVSW +
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK- 419
           +I     H +  EA ++F +M   G+ P+ +TF+S+L AC+   ++K G+++   ++E  
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           YG   RV     ++++Y + G + +A+  + EK+  + + V W A++ A   H       
Sbjct: 444 YGSDDRVR--TALLSMYAKCGSLKDAHR-VFEKIS-KQNVVAWNAMITAYVQHEQYDNAL 499

Query: 480 TAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              Q L +  ++P N   F  ++ +  ++  L+  + V  +++  GLE
Sbjct: 500 ATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 178/319 (55%), Gaps = 9/319 (2%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N++++  ++ G++ +A+ +  +++   ++  + T+  +L+ C     +  GE+++    +
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   D F+ N L++MYAKCG+ + A+ +FD +  KD+ S+N +L GY+ HGL  EAF +
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
              M+ +   PD     S+L   A+A  +  G +++  +L+ G + DL +  +LI ++ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G +  A  +FD++P +D+V+W S+I     H +  +A   F++ME +GV PD + FVSL
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L AC H  +++ G+++ + M E  G    +     ++++Y + G +++A  +    +   
Sbjct: 319 LRACNHPEALEQGKKVHARMKE-VGWDTEIYVGTAILSMYTKCGSMEDALEVF--DLVKG 375

Query: 457 ASPVVWGALLYACYLHGNV 475
            + V W A++     HG +
Sbjct: 376 RNVVSWTAMIAGFAQHGRI 394


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 265/448 (59%), Gaps = 10/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++GI     TF S+L  C    A++ G ++   I       +  + + LL +YA  G +
Sbjct: 405 IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +AH+VF+++S +   A  WN++I+ Y +  +Y++A+A +  + +EG++P+  TF  +L 
Sbjct: 465 KDAHRVFEKISKQNVVA--WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C     + +G+ VH   ++ G   D  V NALV M+  CGD++ A+ +F+ +  +DL+S
Sbjct: 523 VCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS 582

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+++ G++ HG    AFD F+ M  +G  PD +  + +L   A+   L  G ++H  + 
Sbjct: 583 WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALIT 642

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
               + D+ +   LI +Y+K G ++ A  +F  +P+K+V SW S+I     H +  EAL 
Sbjct: 643 EAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALE 702

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM+++GV PD +TFV  LSACAH G ++ G   F  M E + I PR+EHY CMV+L+
Sbjct: 703 LFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLF 761

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAGL++EA   I+ KM+ E    VWGALL AC +H NV + E AAQK  EL+P++   F
Sbjct: 762 GRAGLLNEAVEFII-KMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVF 820

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  IY  AG   +V ++ ++++DRG+
Sbjct: 821 VILSNIYAAAGMWKEVAKMRKVMLDRGV 848



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 254/468 (54%), Gaps = 16/468 (3%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K    +  +Q LE    + I +  +T+++LL+ C + K +  G +++  I  + ++ + 
Sbjct: 86  SKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDI 145

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            + + L+ +YA  G    A Q+FD M  +  ++  WN L+ GY + G YE+A  L+ QM 
Sbjct: 146 FMRNTLINMYAKCGNTISAKQIFDDMREKDVYS--WNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           ++ V+PD+ TF  +L ACA    +  G +++   ++ G+  D FV  AL++M+ KCGDI 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA--- 303
            A  VFD +  +DL+++ SM+TG   HG   +A ++F+ M   G  PD VA  S+L    
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +   L  G +VH  +   G + ++ +  +++ +Y+K G ++ A  +FD +  ++VVSW +
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK- 419
           +I     H +  EA ++F +M   G+ P+ +TF+S+L AC+   ++K G+++   ++E  
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           YG   RV     ++++Y + G + +A+  + EK+  + + V W A++ A   H       
Sbjct: 444 YGSDDRVR--TALLSMYAKCGSLKDAHR-VFEKIS-KQNVVAWNAMITAYVQHEQYDNAL 499

Query: 480 TAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              Q L +  ++P N   F  ++ +  ++  L+  + V  +++  GLE
Sbjct: 500 ATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 178/319 (55%), Gaps = 9/319 (2%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N++++  ++ G++ +A+ +  +++   ++  + T+  +L+ C     +  GE+++    +
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   D F+ N L++MYAKCG+ + A+ +FD +  KD+ S+N +L GY+ HGL  EAF +
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
              M+ +   PD     S+L   A+A  +  G +++  +L+ G + DL +  +LI ++ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G +  A  +FD++P +D+V+W S+I     H +  +A   F++ME +GV PD + FVSL
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L AC H  +++ G+++ + M E  G    +     ++++Y + G +++A  +    +   
Sbjct: 319 LRACNHPEALEQGKKVHARMKE-VGWDTEIYVGTAILSMYTKCGSMEDALEVF--DLVKG 375

Query: 457 ASPVVWGALLYACYLHGNV 475
            + V W A++     HG +
Sbjct: 376 RNVVSWTAMIAGFAQHGRI 394


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 261/436 (59%), Gaps = 9/436 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL      + ++ G K+H  I    L     + + L+ +YA  G I +A  +FD++
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKL 258

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      W  LI+GYA+ G+ + A+ L  +M++  V P++ T+  +L+ C     +  
Sbjct: 259 PEKNVVT--WTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH 316

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+KVH   ++ G+G + +V+NAL+ MY KCG + +AR +F  + ++D++++ +M+TGY  
Sbjct: 317 GKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQ 376

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
            G   EA D+FR M   G  PD +  +S L + S    L+ G  +H  ++  G   D+ +
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYL 436

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            ++L+ +Y+K G +D A  +F+ M +++VV+W ++I     H +  EAL YFEQM++ G+
Sbjct: 437 QSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGI 496

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF S+LSAC H+G V+ G + F  M   YGI P VEHY+C V+L GRAG ++EA 
Sbjct: 497 KPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAE 556

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           ++I+  M F+  P VWGALL AC +H +V  GE AA+ + +L+PD++  +  L  IY  A
Sbjct: 557 NVIL-TMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAA 615

Query: 507 GRLDDVERVERMLVDR 522
           GR +D E+V +++  R
Sbjct: 616 GRYEDAEKVRQVMEKR 631



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 223/401 (55%), Gaps = 11/401 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L + +  G  V ++ F  LL+ C +L+++E G ++H  I  + ++ N+ + + LL +YA 
Sbjct: 84  LNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAK 143

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G + +A +VFD + +R   +  W ++I  +    +  +A   Y  M+  G +PD+ TF 
Sbjct: 144 CGSLTDARRVFDGIRDRNIVS--WTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFV 201

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +L A     L++VG+KVH++  + G   +  V  +LV MYAKCGDI KA+ +FD++  K
Sbjct: 202 SLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEK 261

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           +++++  ++ GY   G +  A ++   M      P+ +  +SIL   +    L  G +VH
Sbjct: 262 NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH 321

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DH 372
            ++++ G   ++ + N+LI +Y K G L +A  LF  +P +DVV+W +++  +++     
Sbjct: 322 RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHD 381

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA+  F +M++ G+ PD +TF S L++C+    ++ G+ +   +V   G S  V   + +
Sbjct: 382 EAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA-GYSLDVYLQSAL 440

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           V++Y + G +D+A  ++  +M  E + V W A++  C  HG
Sbjct: 441 VSMYAKCGSMDDA-RLVFNQMS-ERNVVAWTAMITGCAQHG 479



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 136/235 (57%), Gaps = 2/235 (0%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           +D  ++ LE   Q  +     T+ S+L+ C    A+EHG K+HR I  +   +   + + 
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNA 338

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +Y   G + EA ++F  + +R      W ++++GYA+LG +++AI L+ +M+++G++
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVT--WTAMVTGYAQLGFHDEAIDLFRRMQQQGIK 396

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD+ TF   L +C+    ++ G+ +H   V  G+  D ++ +ALV MYAKCG +  AR V
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLV 456

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           F+++  ++++++ +M+TG   HG   EA + F  M   G  PD V  +S+L+  +
Sbjct: 457 FNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACT 511



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 156/289 (53%), Gaps = 7/289 (2%)

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           +S   + G  ++A+ +   M  +G       F  +L+ CA L  +  G +VH   ++ G 
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             + ++ N L+ MYAKCG +  AR VFD I +++++S+ +M+  ++     +EA+  +  
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 286 MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           M L G  PD V   S+L    N  LL++G +VH  + + G+E +  +  SL+ +Y+K G 
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGD 247

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSA 399
           + +A  +FD +P+K+VV+W  +I  +++  +   AL   E+M++  V P+ +T+ S+L  
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQG 307

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           C    +++ G+++   +++  G    +     ++ +Y + G + EA  +
Sbjct: 308 CTTPLALEHGKKVHRYIIQS-GYGREIWVVNALITMYCKCGGLKEARKL 355


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 255/447 (57%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T+  LL  C    A+  G ++H  +       + G+ + L+ +Y+  G I 
Sbjct: 321 REGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIK 380

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VFD+M  +   +  W ++I G A+ G   +A+ +Y +M++ GVEP++ T+  +L A
Sbjct: 381 DARLVFDKMVRKDVIS--WTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNA 438

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+    +  G ++H   V  G   D  V N LV+MY+ CG +  AR VFDR+  +D+++Y
Sbjct: 439 CSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAY 498

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+M+ GY  H L  EA  +F  +   G  PD V   ++L   AN+  L    ++H  V +
Sbjct: 499 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRK 558

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D  + N+L+  Y+K G    A  +F+ M +++V+SWN+II     H +  +AL  
Sbjct: 559 GGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQL 618

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE+M+ +GV PD +TFVSLLSAC+H G ++ G R F  M + + I P +EHY CMV+L G
Sbjct: 619 FERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLG 678

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +DEA ++I + M F+A+  +WGALL AC +HGNV + E AA+   +L+ DN   + 
Sbjct: 679 RAGQLDEAEALI-KTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYV 737

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
            L  +Y  AG  D   ++ +++  RG+
Sbjct: 738 ALSHMYAAAGMWDSAAKLRKLMEQRGV 764



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 235/449 (52%), Gaps = 12/449 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G  V +  +  +L+ C ++K +  G ++H+ I  +    ++   + L+ +Y   G I+
Sbjct: 16  QQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIE 75

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA QV+ ++S        WN+++ GY + G  E A+ L  QM++ G+ PD+ T    L +
Sbjct: 76  EARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSS 135

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C   G +  G ++H  A++ G  FD  V N +++MYAKCG I +AR VFD++  K ++S+
Sbjct: 136 CKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSW 195

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
              + GY   G    AF+IF+ M   G  P+ +   S+L   ++ + L+ G  VH  +L 
Sbjct: 196 TITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILN 255

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G E D  +  +L+ +Y+K G       +F+ +  +D+++WN++I   ++     EA   
Sbjct: 256 AGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEV 315

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           + QM+R+GV+P+ +T+V LL+AC +  ++  G+ + S  V K G +  +     ++++Y 
Sbjct: 316 YNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHS-RVAKAGFTSDIGVQNALISMYS 374

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPDNEHN 495
           R G I +A  ++ +KM      + W A++      G      T  Q++ +  +EP N   
Sbjct: 375 RCGSIKDA-RLVFDKM-VRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEP-NRVT 431

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  ++    +   L+   R+ + +V+ GL
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGL 460



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 244/466 (52%), Gaps = 24/466 (5%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISS 130
           ++  ++ L    Q+G+     T  S L +C    A+E G ++H + +   LL   K +++
Sbjct: 107 IEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVK-VAN 165

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            +L +YA  G I+EA +VFD+M  ++  +  W   I GYA+ G  E A  ++ +ME+EGV
Sbjct: 166 CILNMYAKCGSIEEAREVFDKMEKKSVVS--WTITIGGYADCGRSETAFEIFQKMEQEGV 223

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
            P++ T+  VL A +    ++ G+ VH   +  G   D  V  ALV MYAKCG     R 
Sbjct: 224 VPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQ 283

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
           VF+++ N+DLI++N+M+ G    G   EA +++  M   G  P+ +    +L    N++ 
Sbjct: 284 VFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAA 343

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L  G ++H  V + G   D+ + N+LI +YS+ G +  A  +FD M +KDV+SW ++I  
Sbjct: 344 LHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGG 403

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
            +K     EAL  +++M++ GV P+ +T+ S+L+AC+   +++ G R+   +VE  G++ 
Sbjct: 404 LAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLAT 462

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
                  +VN+Y   G + +A   + ++M  +   V + A++     H    +G+ A  K
Sbjct: 463 DAHVGNTLVNMYSMCGSVKDA-RQVFDRM-IQRDIVAYNAMIGGYAAHN---LGKEAL-K 516

Query: 485 LFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           LF+      L+PD      +L     N+G L+    +  ++   G 
Sbjct: 517 LFDRLQEEGLKPDKVTYINML-NACANSGSLEWAREIHTLVRKGGF 561



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 154/275 (56%), Gaps = 9/275 (3%)

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           E + A+ +   ++++G + +   + ++LK C  +  +  G +VH   ++     D + +N
Sbjct: 3   EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVN 62

Query: 234 ALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
           AL++MY +CG I +AR V+ ++    + + S+N+M+ GYI +G + +A  + R M  +G 
Sbjct: 63  ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL 122

Query: 292 DPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   I S L++      L  G ++H   ++ G+ +D+ +AN ++ +Y+K G +++A  
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 349 LFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +FD M +K VVSW   I  ++   +   A   F++ME++GV+P+ +T++S+L+A +   +
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           +K G+ + S ++   G          +V +Y + G
Sbjct: 243 LKWGKAVHSRILNA-GHESDTAVGTALVKMYAKCG 276


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 298/510 (58%), Gaps = 31/510 (6%)

Query: 44  TTFSS-YPKSSP----TPLLTNQKAF-PKTKLQALDS-IIQDL--ESSVQNGITVQTETF 94
           T +S+ YP SSP    + L  +  +F P T   + ++ +IQ L  + +++  + + +   
Sbjct: 6   TPYSTHYPPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLSHES 65

Query: 95  ASLLETCYQL-------KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
               +TC  L        ++   + +H+L+      ++  +++KL+ +++    +D A +
Sbjct: 66  NPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARK 125

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG- 206
           VFD+   RT +   WN+L    A  G   D + LY +M   GV  D+FT+  +LKAC   
Sbjct: 126 VFDKTRKRTIYV--WNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVAS 183

Query: 207 ---LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +  ++ G+++H   +R G+G    V+  L+DMYA+ G +  A  VFD +  K+++S+
Sbjct: 184 ECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSW 243

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWV 318
           ++M+  Y  +G   EA ++FR M+LN  D  P+ V + S+L   A  + L  G  +H ++
Sbjct: 244 SAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYI 303

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
           LRRG++  L + ++LI +Y++ GKL+    +FD M +KDVV WNS+I +   H    +A+
Sbjct: 304 LRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAI 363

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+M   G  P H++F+S+L AC+H G V+ G++LF  MV+++GI P VEHYACMV+L
Sbjct: 364 KIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDL 423

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRA  +DEA + I+E +  E  P VWG+LL AC +H +V + E A+++LF+LEP N  N
Sbjct: 424 LGRANRLDEA-AKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGN 482

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + LL  IY  A   D+V+RV+++L  R L+
Sbjct: 483 YVLLADIYAEAEMWDEVKRVKKLLDSRELQ 512


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 256/447 (57%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T+  LL  C    A+  G ++H  +  +    +  + + L+ +YA  G I 
Sbjct: 439 REGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIK 498

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  +F++M  +   +  W ++I G A+ G   +A+A++  M++ G++P++ T+  +L A
Sbjct: 499 DARLLFNKMVRKDIIS--WTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNA 556

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+    +  G ++H   +  G   D  V N LV+MY+ CG +  AR VFDR+  +D+++Y
Sbjct: 557 CSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAY 616

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+M+ GY  H L  EA  +F  +   G  PD V   ++L   AN+  L    ++H  VL+
Sbjct: 617 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLK 676

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D  + N+L+  Y+K G    A  +FD M +++V+SWN+II     H +  + L  
Sbjct: 677 DGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQL 736

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE+M+ +G+ PD +TFVSLLSAC+H G ++ G R F  M   +GI+P +EHY CMV+L G
Sbjct: 737 FERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLG 796

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +DE  ++I + M F+A+  +WGALL AC +HGNV + E AA+   +L+PDN   + 
Sbjct: 797 RAGQLDEVEALI-KTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYV 855

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
            L  +Y  AG  D   ++ +++  RG+
Sbjct: 856 ALSHMYAAAGMWDSAAKLRKLMEQRGV 882



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 246/501 (49%), Gaps = 53/501 (10%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           K +A+D ++Q L+   Q G  V +  +  +L+ C ++K +  G ++H  I  +    ++ 
Sbjct: 122 KDRAMD-VVQYLQ---QQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQY 177

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
             + L+ +Y   G I+EA QV++++++       WN+++ GY + G  E+A+ L  +M++
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+   + T  R+L +C     +  G ++H++A++    FD  V N +++MYAKCG I +
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR VFD++  K ++S+  ++ GY   G    AF+IF+ M   G  P+ +   ++L   + 
Sbjct: 298 AREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSG 357

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            + L+ G  VH  +L  G E DL +  +L+ +Y+K G       +F+ +  +D+++WN++
Sbjct: 358 PAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 417

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSAC--------------------- 400
           I   ++     EA   + QM+R+G++P+ +T+V LL+AC                     
Sbjct: 418 IGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 401 --------------AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
                         A  GS+K    LF+ MV K  IS     +  M+    ++GL  EA 
Sbjct: 478 MFDISVQNALISMYARCGSIKDARLLFNKMVRKDIIS-----WTAMIGGLAKSGLGAEAL 532

Query: 447 SMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELE-PDNEHNFELLIKIY 503
           ++  +  +    P  V + ++L AC     +  G    Q++ E     + H    L+ +Y
Sbjct: 533 AVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMY 592

Query: 504 GNAGRLDDVERVERMLVDRGL 524
              G + D  +V   +  R +
Sbjct: 593 SMCGSVKDARQVFDRMTQRDI 613


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 261/437 (59%), Gaps = 10/437 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL      + ++ G K+H  I    L     + + L+ +YA  G I +A  +FD++
Sbjct: 150 TFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRL 209

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      W  LI+GYA+ G+ + A+ L   M++  V P++ TF  +L+ C     +  
Sbjct: 210 PEKNVVT--WTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+KVH   ++ G+G + +V+N+L+ MY KCG + +AR +F  + ++D++++ +M+TGY  
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQ 327

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
            G   EA ++FR M   G  PD +  +S+L + S    L+ G ++H  ++  G   D+ +
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYL 387

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA----HSKDHEALIYFEQMERDG 385
            ++L+ +Y+K G +D A  +F+ M +++VV+W +II      H +  EAL YF+QM++ G
Sbjct: 388 QSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQG 447

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD +TF S+LSAC H+G V+ G + F  M   YGI P VEHY+C V+L GRAG ++EA
Sbjct: 448 IKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEA 507

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
            ++I+  M F   P VWGALL AC +H +V  GE AA+ + +L+PD++  +  L  IY  
Sbjct: 508 ENVIL-SMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAA 566

Query: 506 AGRLDDVERVERMLVDR 522
           AGR +D E+V +++  R
Sbjct: 567 AGRYEDAEKVRQVMEKR 583



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 226/404 (55%), Gaps = 11/404 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           + + +  G  V ++ F  LL+ C +L+++E G ++H  I  + ++ N+ + + LL +YA 
Sbjct: 35  MNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAK 94

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G + +A +VFD + +R   +  W ++I  +    +  +A   Y  M+  G +PD+ TF 
Sbjct: 95  CGSLTDARRVFDSIRDRNIVS--WTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFV 152

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +L A     L+++G+KVH++ V  G   +  V  +LV MYAKCGDI KAR +FDR+  K
Sbjct: 153 SLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEK 212

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           +++++  ++ GY   G +  A ++   M      P+ +  +SIL   +    L  G +VH
Sbjct: 213 NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVH 272

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DH 372
            ++++ G   +L + NSLI +Y K G L++A  LF  +P +DVV+W +++  +++     
Sbjct: 273 RYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHD 332

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA+  F +M++ G+ PD +TF S+L++C+    ++ G+R+   +V   G +  V   + +
Sbjct: 333 EAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSAL 391

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V++Y + G +D+A S++  +M  E + V W A++  C      C
Sbjct: 392 VSMYAKCGSMDDA-SLVFNQMS-ERNVVAWTAIITGCCAQHGRC 433



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 140/236 (59%), Gaps = 3/236 (1%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           +D  ++ LE+  Q  +     TFAS+L+ C    A+EHG K+HR I  +   +   + + 
Sbjct: 230 VDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNS 289

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +Y   G ++EA ++F  + +R      W ++++GYA+LG +++AI L+ +M+++G++
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHRDVVT--WTAMVTGYAQLGFHDEAINLFRRMQQQGIK 347

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD+ TF  VL +C+    ++ G+++H   V  G+  D ++ +ALV MYAKCG +  A  V
Sbjct: 348 PDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLV 407

Query: 252 FDRIGNKDLISYNSMLTGYI-HHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           F+++  ++++++ +++TG    HG   EA + F  M   G  PD V  +S+L+  +
Sbjct: 408 FNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           +S   + G  ++A+ +   M  +G       F  +L+ CA L  +  G +VH   ++ G 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             + ++ N L+ MYAKCG +  AR VFD I +++++S+ +M+  ++     +EAF  +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 286 MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           M L G  PD V   S+L    N  LL++G +VH  ++  G+E +  +  SL+ +Y+K G 
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD 198

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSA 399
           + +A  +FD +P+K+VV+W  +I  +++  +   AL   E M++  V P+ +TF S+L  
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQG 258

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C    +++ G+++   +++  G    +     ++ +Y + G ++EA  +  +    +   
Sbjct: 259 CTTPAALEHGKKVHRYIIQS-GYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDV-- 315

Query: 460 VVWGALL 466
           V W A++
Sbjct: 316 VTWTAMV 322


>gi|218194130|gb|EEC76557.1| hypothetical protein OsI_14365 [Oryza sativa Indica Group]
          Length = 484

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 273/501 (54%), Gaps = 41/501 (8%)

Query: 30  QRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV 89
           QRR++    +R R      +P S     LT + A P      LD ++ DL S  +  +  
Sbjct: 15  QRRRRSTAPARRRGPPSRRHPHSGAA--LTLRAAPPPATQPTLDRVLSDLGSHPR--LLT 70

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
                + L           +  +L RL+  +LLR+   ++ +LL L+A+ GL+  AHQ+F
Sbjct: 71  PDLLDSLLAALPLHPSPRRNLARLRRLLSVSLLRRYPALARRLLHLHASLGLVSYAHQLF 130

Query: 150 DQMSNRTAF--AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           DQ+    A   AFPWN  I G                                L+ACAG+
Sbjct: 131 DQLLPARAREDAFPWNCSIDG-------------------------------ALQACAGV 159

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G + +G  +H D VR     D  V +ALVD+YA  GD+ +A  VFD + ++D +S+N ML
Sbjct: 160 GSVELGHAIHRDVVRAVLASDVPVCDALVDLYATFGDVRRALQVFDAMPDRDGVSWNIML 219

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL----RIGAQVHGWVLRRGV 323
            G + HGL  +A +++R M+    +PD + +S++L+    +    + G ++H W +R G+
Sbjct: 220 AGCLRHGLSQQALELWRRMLREEHEPDSITLSTMLSILPSVCDNGKWGLEIHAWAIRHGL 279

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
           E +L +AN+LI +YS   +   A  +F+ M  +D+ SWN+II AH +D+  L+ F +M  
Sbjct: 280 ETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSWNAIISAHLQDYRILMIFRRMVD 339

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD  TF  + SAC HLG V+ G RLFS M  +Y I P +E Y CMVN+ G+AG+I 
Sbjct: 340 SGMQPDETTFALVFSACDHLGLVEGGMRLFSEMENEYRIPPTMEQYTCMVNMLGKAGMIH 399

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EAY  + ++   +    V  ALL AC +H N  +GE  A++L ELEPDNEHNF  L++IY
Sbjct: 400 EAYEFMSKRKPLDNEQTVLRALLQACLMHRNARVGEIIAKRLIELEPDNEHNFVKLMEIY 459

Query: 504 GNAGRLDDVERVERMLVDRGL 524
            N GRL + E+V++ + DRGL
Sbjct: 460 PNVGRLVEAEKVKKTMRDRGL 480


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 289/506 (57%), Gaps = 29/506 (5%)

Query: 46  FSSYP---KSSPTPLLTNQKAFPKTKLQAL--DSIIQDLESSVQNGITVQ---------T 91
           F +YP    S  + +  N   +P   +++   D +IQ L         VQ          
Sbjct: 15  FQNYPCRYSSHVSFVSLNASGYPTKDIKSNNNDDLIQSLCRGGNLKQAVQLLCCEPNPTK 74

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +TF  L+ +C +  ++  G+ +H  +  + L ++  +++KL+ +Y   G +D A +VFD+
Sbjct: 75  KTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDE 134

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA----GL 207
              +T F   WN++    A     ED + LY QM   G+  ++FT+  VLKAC      +
Sbjct: 135 TREKTIFV--WNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSI 192

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
             +R G+++H   +R G+     V+  L+D+YA+ G +  A +VF  + +K+++S+++M+
Sbjct: 193 CPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMI 252

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
             Y  + + ++A ++F+ M+L   D  P+P+ + S+L A ASL  L  G  VH +VLRRG
Sbjct: 253 ACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRG 312

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFE 379
           ++  L + N+LI +Y + G++     +FD+M ++DV+SWNS+I     H    +A+  FE
Sbjct: 313 LDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFE 372

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M   GV P ++TF+++L AC+H G V+  + LF  M+ KY I PR+EHYACMV++ GRA
Sbjct: 373 NMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRA 432

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
             +DEA  +I + M+F+  P VWG+LL +C +H NV + E A+  LFELEP N  N+ LL
Sbjct: 433 NRLDEAIELI-QNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLL 491

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY  +   +DV RV + L  RGL+
Sbjct: 492 SHIYAKSRMWNDVRRVRKQLESRGLQ 517


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 268/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL+ C + KA   G ++H  +       +  + + L+ +Y   G  ++A
Sbjct: 98  GLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDA 157

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            +VFDQ S+R   ++                              WN+LISGYAE G Y+
Sbjct: 158 RKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYK 217

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V+PD+ T   VL ACA    I +G +VH      GFG +  ++NAL+
Sbjct: 218 EALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y KCG++  A  +F+ +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 278 DLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  +FD
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  + + SWN++I     H + + A   F +M +DG+ PD +TFV LLSAC+H G + +
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M E Y I+P++EHY CM++L G +GL  EA  MI   ME +   V+W +LL A
Sbjct: 458 GRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-NSMEMDPDGVIWCSLLKA 516

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE+ AQ L ++EP N  ++ LL  IY  AGR ++V +   +L D+G++
Sbjct: 517 CKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMK 573



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 231/470 (49%), Gaps = 53/470 (11%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR---LYATFGLIDEAHQVFDQM 152
           SLL  C  L+++   I   ++I T L   N  +S KL+    L   F  +  A  VFD +
Sbjct: 7   SLLHNCKTLQSLR--IIHAKMIKTGLHNTNYALS-KLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++  G+A   +   A+ LY  M   G+ P+ +TFP +LKACA     R 
Sbjct: 64  QEPNLLI--WNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFRE 121

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY--------- 263
           G+++H   ++ G   D +V  +L+ MY K G    AR VFD+  ++D++SY         
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181

Query: 264 ----------------------NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
                                 N++++GY   G   EA ++F+ M+     PD   + ++
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L   A ++ + +G QVH W+   G   +L I N+LI +Y K G+++ A  LF+ +  KDV
Sbjct: 242 LSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV 301

Query: 359 VSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SWN++I  ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIG-RWIHV 360

Query: 416 MVEKY--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++K   G+S        ++++Y + G I EA   + + M    S   W A+++   +HG
Sbjct: 361 YIDKRLKGVSNPSSLRTSLIDMYAKCGDI-EAAQQVFDSM-LNRSLSSWNAMIFGFAMHG 418

Query: 474 --NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
             N      +  +   +EPD+   F  L+    ++G LD    + R + +
Sbjct: 419 RANPAFDIFSRMRKDGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMTE 467



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 12/140 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS------SKLLRLY 136
           +++G +    T  S+L  C  L A++ G  +H  I   L    KG+S      + L+ +Y
Sbjct: 328 LRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRL----KGVSNPSSLRTSLIDMY 383

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G I+ A QVFD M NR+  +  WN++I G+A  G    A  ++ +M ++G+EPD  T
Sbjct: 384 AKCGDIEAAQQVFDSMLNRSLSS--WNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDIT 441

Query: 197 FPRVLKACAGLGLIRVGEKV 216
           F  +L AC+  G++ +G  +
Sbjct: 442 FVGLLSACSHSGMLDLGRHI 461


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 257/450 (57%), Gaps = 10/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI     T   +L+ C + +AV  G ++H       L  +  +S+ L+R+YA   +I
Sbjct: 117 LSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVI 176

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD    R   +  W ++I GY ++G   + + L+F+M  E ++ D  T   VL 
Sbjct: 177 RSARKVFDTSPQRDLVS--WTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLS 234

Query: 203 ACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           +CA LG +R+G K+H   +R      D FV NALVDMY KCGD   AR VF  +  K+++
Sbjct: 235 SCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVV 294

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+NSM++G    G   E+  +FR M   G  PD V + ++L   AN  +L +G  VH ++
Sbjct: 295 SWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYL 354

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEAL 375
            R  +  D  I N+L+ +Y+K G +DQACW+F  M +KDV S+ ++I     H +  +AL
Sbjct: 355 DRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKAL 414

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +M + G+ PD +TFV +L+AC+H+G V+ G + F  M   Y + P++EHY CMV+L
Sbjct: 415 DLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDL 474

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAGLI+EA   I   M  E    V GALL AC +HG V +GE+  +K+ ++EP  +  
Sbjct: 475 LGRAGLINEAEEFI-RNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGA 533

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + L+  IY +A R  D  ++ + + +R LE
Sbjct: 534 YVLMSNIYSSANRWRDALKLRKTMKERNLE 563



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 233/471 (49%), Gaps = 51/471 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK--GISSKLLRLYATFGLIDEAHQVFD 150
           +F S L+TC  +K ++   ++H  I   +   +    IS++L  L A    ID  + +  
Sbjct: 24  SFLSTLQTCKSIKGLK---QIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSL 80

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
               RT     +N++I G A       + + +Y QM  +G+ PD +T P VLKACA    
Sbjct: 81  LAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRA 140

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +R GE+VH  A++ G   D +V N L+ MYA C  I  AR VFD    +DL+S+ +M+ G
Sbjct: 141 VREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQG 200

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR-GVEW 325
           Y+  G   E   +F  M       D + +  +L++ +    LR+G ++H +++R   V  
Sbjct: 201 YVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNL 260

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           D+ + N+L+ +Y K G  + A  +F  MP K+VVSWNS+I   ++     E+L  F +M+
Sbjct: 261 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 320

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           R GV PD +T V++L++CA+LG +++G+ + + + ++  I         +V++Y + G I
Sbjct: 321 RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYL-DRNQIRADGFIGNALVDMYAKCGSI 379

Query: 443 DEA------------YS---MIV------------------EKMEFEASPVVWGALLYAC 469
           D+A            YS   MIV                   KM  E   V +  +L AC
Sbjct: 380 DQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTAC 439

Query: 470 YLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
              G V  G    + +   + L P  EH +  ++ + G AG +++ E   R
Sbjct: 440 SHVGLVEEGRKYFEDMSTIYNLRPQLEH-YGCMVDLLGRAGLINEAEEFIR 489


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/418 (39%), Positives = 249/418 (59%), Gaps = 9/418 (2%)

Query: 112  KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
            K H  I    L+ +  I +K   +Y +F  ID A  VF+ + N  +F   WN +I G+A 
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFL--WNVMIRGFAT 795

Query: 172  LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             G +  ++ LY +M E+G++PD+F FP  LK+CAGL  ++ G+ +H   V  G   D FV
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 232  LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
              ALVDMYAKCGDI  AR VFD++  +DL+S+ SM++GY H+G   E    F  M  +G 
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 292  DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             P+ V+I S+L    N   LR G   H +V++ G E+D+ +A +++ +YSK G LD A  
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 349  LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
            LFD    KD+V W+++I +   H    +A+  F+QM + GV P H+TF  +LSAC+H G 
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 406  VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
            ++ G+  F +M E++ I+ ++ +YACMV+L GRAG + EA  +I E M  E    +WG+L
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLI-ENMPVEPDASIWGSL 1094

Query: 466  LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            L AC +H N+ + E  A  LF L+P +     LL  IY    R ++VE+V +M+  RG
Sbjct: 1095 LGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRG 1152



 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 254/446 (56%), Gaps = 10/446 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           + +   T  S++  C QL  V+ G  +H L+       +  + + LL LYA  G    A 
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAA 261

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            +F +M  +   +  W+++I+ YA      +A+ L+ +M E+  EP+  T    L+ACA 
Sbjct: 262 NLFSKMPEKDVIS--WSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV 319

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
              +  G+K+H  AV  GF  D  V  AL+DMY KC    +A  +F R+  KD++S+ ++
Sbjct: 320 SRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVAL 379

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGV 323
           L+GY  +G+  ++  +FR M+ +G  PD VA+  ILA +S L I  Q   +HG+V+R G 
Sbjct: 380 LSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGF 439

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
             ++ +  SLI +YSK G L  A  LF  M  +DVV W+S+I A   H +  EAL  F+Q
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQ 499

Query: 381 MERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           M ++  V P+++TF+S+LSAC+H G V+ G ++F  MV  Y + P  EH+  MV+L GR 
Sbjct: 500 MVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRI 559

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +A   I+ +M   A P VWGALL AC +H N+ MGE AA+ LF L+P +   + LL
Sbjct: 560 GQLGKAMD-IINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILL 618

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY   G+ D+V  +   + +RGL+
Sbjct: 619 SNIYAVDGKWDNVAELRTRIKERGLK 644



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 201/388 (51%), Gaps = 25/388 (6%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +    L + C   ++V    +LH  +    +  +   ++KL  LYA    +  A +VFD+
Sbjct: 5   QVLVDLFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDE 61

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLI 210
             +       WNS +  Y    ++E+ + L+  M    G  PD FT P  LKACAGL ++
Sbjct: 62  TPHPNVHL--WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRML 119

Query: 211 RVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
            +G+ +H  A +    G D FV +ALV++Y+KCG + +A  VF+     D + + SM+TG
Sbjct: 120 ELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTG 179

Query: 270 YIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLRRGVEW 325
           Y  +    EA  +F  M+ ++    DPV + S++ A A LL +  G+ VHG V+RR  + 
Sbjct: 180 YQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDG 239

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           DL + NSL+ +Y+K G    A  LF  MP+KDV+SW+++I  ++ +   +EAL  F +M 
Sbjct: 240 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI 299

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
                P+ +T VS L ACA   +++ G+++  + V K G          ++++Y +    
Sbjct: 300 EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK-GFELDFSVSTALIDMYMKCSCP 358

Query: 443 DEAYSMIVEKMEFEASP----VVWGALL 466
           DEA  +      F+  P    V W ALL
Sbjct: 359 DEAVDL------FQRLPKKDVVSWVALL 380



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 137/268 (51%), Gaps = 11/268 (4%)

Query: 214  EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +K H     +G  +D  +L     MY     I  A  VF+ I N     +N M+ G+   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 274  GLLVEAFDIFRGMILNGFDPD----PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G  + + +++  M+  G  PD    P A+ S  A  S L+ G  +H  ++  G   DL +
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSC-AGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 330  ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSK-DHEALIYFEQMERDGV 386
              +L+ +Y+K G ++ A  +FD M  +D+VSW S+I  +AH+  + E L +F+ M   GV
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 387  LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            +P+ ++ +S+L AC +LG+++ GE   S +++  G    +     ++++Y + G +D A 
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQT-GFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 447  SMIVEKMEFEASPVVWGALLYACYLHGN 474
             +  E    +   V W A++ +  +HG+
Sbjct: 975  CLFDETAGKDL--VCWSAMIASYGIHGH 1000


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 173/490 (35%), Positives = 280/490 (57%), Gaps = 17/490 (3%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTET---FASLLETC 101
           +F S  K+  T  + N   F ++   +L +     +++  +    Q  T   + SLL++C
Sbjct: 2   SFYSIKKTQHTSFIFNLFPFSQSFYHSLAT----HQTASVDSFPPQPTTHYGYTSLLQSC 57

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
              KA+  G +LH       +  N+ +++KL+ LYA    +  A  +FD++  +  F   
Sbjct: 58  IDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFL-- 115

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN LI GYA  G +++AI LY +M + G+ PD FT P VLKAC+ L  I  G  +H   +
Sbjct: 116 WNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVI 175

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G+  D FV  AL+DMYAKCG ++ A  VFD+I  +D + +NSML  Y  +G   E+  
Sbjct: 176 KSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESIS 235

Query: 282 IFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           + R M  NG  P    + +++   A+ + L  G ++HG+  R G + +  +  +LI +Y+
Sbjct: 236 LCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYA 295

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G +  A  LF+ + +K VVSWN+II     H     AL  F++M ++   PDH+TFV 
Sbjct: 296 KCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVG 354

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L+AC+    +  G  L+++MV  YGI+P V+HY CM++L G  G +DEAY +I   M  
Sbjct: 355 VLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLI-RNMSV 413

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           +    VWGALL +C +HGNV + E A +KL ELEPD+  N+ +L  +Y  +G+ + VE++
Sbjct: 414 KPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKL 473

Query: 516 ERMLVDRGLE 525
            ++++D+ ++
Sbjct: 474 RQVMIDKRIK 483


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 268/476 (56%), Gaps = 22/476 (4%)

Query: 63  AFPKTKLQALDSII----------QDLESS---VQNGITVQTETFASLLETCYQLKAVEH 109
           + PK  LQ+ ++II          Q L+S    ++ G+     T +  L  C  ++    
Sbjct: 342 SMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLE 401

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H L   ++   N  +++ +L +Y     + EA  +FD M  R A +  WN++I+  
Sbjct: 402 GRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVS--WNAIIAAC 459

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            + G  E+ +A +  M    +EPD FT+  VLKACAG   +  G ++H   ++ G GFD 
Sbjct: 460 EQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDS 519

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV  ALVDMY KCG I KA  + DR   K ++S+N++++G+       +A   F  M+  
Sbjct: 520 FVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEM 579

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G +PD    +++L   AN + + +G Q+H  ++++ ++ D+ I ++L+ +YSK G +  +
Sbjct: 580 GVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDS 639

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F+  P +D V+WN+++     H    EAL  FE M+   V P+H TFVS+L ACAH+
Sbjct: 640 QLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHM 699

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G   F VM+ +YG+ P+ EHY+CMV++ GR+G IDEA ++ V+KM FEA  V+W 
Sbjct: 700 GLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNL-VQKMPFEADAVIWR 758

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            LL  C +HGNV + E A + L +L+P +     LL  IY +AG   +V  + +M+
Sbjct: 759 NLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMM 814



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 226/457 (49%), Gaps = 31/457 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V    +ASL  +C  L A+  G +LH     +    +  + +  L +YA  G + +A
Sbjct: 277 GVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADA 336

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +V   M   +  ++  N++I GYA       A+  +  + + G+  D+ T    L ACA
Sbjct: 337 QKVLSSMPKCSLQSY--NAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACA 394

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G +VH  AV+     +  V NA++DMY KC  + +A  +FD +  +D +S+N+
Sbjct: 395 SIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNA 454

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++     +G   E    F  MI +  +PD     S+L   A    L  G ++H  +++ G
Sbjct: 455 IIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSG 514

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           + +D  +  +L+ +Y K G +++A  + D   QK +VSWN+II   S   +  +A  +F 
Sbjct: 515 MGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFS 574

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   GV PD+ T+ ++L  CA+L +V +G+++ + ++ K  +   V   + +V++Y + 
Sbjct: 575 RMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQII-KQELQSDVYICSTLVDMYSKC 633

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFE------LE 489
           G + ++  M      FE +P    V W A+L     HG   +GE A  KLFE      ++
Sbjct: 634 GNMQDSQLM------FEKAPNRDFVTWNAMLCGYAHHG---LGEEAL-KLFESMQLVNVK 683

Query: 490 PDNEHNFELLIKIYGNAGRLDD-VERVERMLVDRGLE 525
           P N   F  +++   + G +D  +   + ML + GL+
Sbjct: 684 P-NHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLD 719



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 227/467 (48%), Gaps = 37/467 (7%)

Query: 50  PKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT-------------VQTETFAS 96
           P ++ + L  NQ   P  K++    I Q  E S QN +               +  TF S
Sbjct: 31  PTNNFSTLAQNQTQ-PPAKIRTFSHIYQ--ECSKQNSLNPGKQAHARMIFCGFEPTTFVS 87

Query: 97  --LLETCYQLKAVEHGIKL-HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
             L++   +   +++  K+  ++   +++  N  IS      YA+ G +D A + F +M 
Sbjct: 88  NCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISG-----YASCGEMDIARKFFYEMP 142

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R   +  WNS+ISG+ + GE   +I ++ +M   GV  D+ +   VLKAC  L    +G
Sbjct: 143 ERDVVS--WNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMG 200

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +VH   V+FGF  D    +AL+ MYAKC  +  + +VF  +  K+ +S+++M+ G + +
Sbjct: 201 VQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQN 260

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
              VE  ++F+ M   G        +S+    A  S LR+G ++H   L+     D+ + 
Sbjct: 261 DRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVG 320

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVL 387
            + + +Y+K G++  A  +   MP+  + S+N+II  +++     +AL  F+ + + G+ 
Sbjct: 321 TATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLG 380

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
            D +T    L+ACA +     G ++  + V+   +S      A ++++YG+   + EA S
Sbjct: 381 FDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANA-ILDMYGKCKALAEA-S 438

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGN--VCMGETAAQKLFELEPDN 492
            + + ME     V W A++ AC  +GN    +   A+     +EPD+
Sbjct: 439 DLFDMME-RRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDD 484


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 268/449 (59%), Gaps = 12/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGL 141
           +++GI     TF S+L  C +  A++ G ++H R+I    +  ++ + + LL +YA  G 
Sbjct: 399 IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR-VRTALLSMYAKCGS 457

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           + +A  VF+++S +   A  WN++I+ Y +  +Y++A+A +  + +EG++PD  TF  +L
Sbjct: 458 LMDARNVFERISKQNVVA--WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSIL 515

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
             C     + +G+ V    +R GF  D  + NALV M+  CGD++ A  +F+ +  +DL+
Sbjct: 516 NVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLV 575

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+N+++ G++ HG    AFD F+ M  +G  PD +  + +L   A+   L  G ++H  +
Sbjct: 576 SWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALI 635

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
               ++ D+ +   LI +Y+K G +D A  +F ++P+K+V SW S+I     H +  EAL
Sbjct: 636 TEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEAL 695

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F QM+++GV PD +TFV  LSACAH G +K G   F  M + + I PR+EHY CMV+L
Sbjct: 696 ELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDL 754

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           +GRAGL+ EA   I  KM+ +    +WGALL AC +H +V + E  AQK  EL+P+++  
Sbjct: 755 FGRAGLLHEAVEFI-NKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGV 813

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + +L  IY  AG   +V ++ ++++DRG+
Sbjct: 814 YVILSNIYAAAGMWKEVTKMRKVMLDRGV 842



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/480 (30%), Positives = 246/480 (51%), Gaps = 48/480 (10%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+      F SLL+ C   +A+E G ++H  +    L     + + LL +Y   G ++
Sbjct: 299 EEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSME 358

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF+ +  R   +  W ++I+G+A+ G  E+A   + +M E G+EP++ TF  +L A
Sbjct: 359 DALEVFNLVKGRNVVS--WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGA 416

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+    ++ G ++H   ++ G+  D  V  AL+ MYAKCG ++ AR VF+RI  ++++++
Sbjct: 417 CSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAW 476

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+M+T Y+ H     A   F+ ++  G  PD    +SIL    +   L +G  V   ++R
Sbjct: 477 NAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR 536

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G E DL I N+L+ ++   G L  A  LF+ MP++D+VSWN+II     H ++  A  Y
Sbjct: 537 AGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDY 596

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+ M+  GV PD +TF  LL+ACA   ++  G RL +++ E   +   V     ++++Y 
Sbjct: 597 FKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA-ALDCDVVVGTGLISMYT 655

Query: 438 RAGLIDEAY---------------SMIVE---------------KMEFEASPVVW----G 463
           + G ID+A+               SMI                 +M+ E     W    G
Sbjct: 656 KCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVG 715

Query: 464 ALLYACYLHGNVCMG--ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD-VERVERMLV 520
           A L AC   G +  G     + K F +EP  EH +  ++ ++G AG L + VE + +M V
Sbjct: 716 A-LSACAHAGLIKEGLHHFESMKDFNIEPRMEH-YGCMVDLFGRAGLLHEAVEFINKMQV 773



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 245/448 (54%), Gaps = 16/448 (3%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I +  +T++SLL+ C + K +  G ++H  I  + ++ +  + + L+ +YA  G  + A 
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           Q+FD+M ++  ++  WN L+ GY +   YE+A  L+ QM ++GV+PD++TF  +L ACA 
Sbjct: 160 QIFDEMPDKDVYS--WNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACAD 217

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
              +  G ++    +  G+  D FV  AL++M+ KCG +  A  VF+ +  +DLI++ SM
Sbjct: 218 AKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM 277

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGV 323
           +TG   H    +A ++F+ M   G  PD VA  S+L    +   L  G +VH  +   G+
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGL 337

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           + ++ +  +L+ +Y+K G ++ A  +F+ +  ++VVSW ++I     H +  EA ++F +
Sbjct: 338 DTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRA 439
           M   G+ P+ +TF+S+L AC+   ++K G ++   +++  Y    RV     ++++Y + 
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKC 455

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPDNEHNFE 497
           G + +A + + E++  + + V W A++ A   H          Q L +  ++PD+   F 
Sbjct: 456 GSLMDARN-VFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSS-TFT 512

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++ +  +   L+  + V+ +++  G E
Sbjct: 513 SILNVCKSPDALELGKWVQSLIIRAGFE 540



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 212/400 (53%), Gaps = 11/400 (2%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E  VQ+G+     TF  +L  C   K V+ G +L  LI       +  + + L+ ++   
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKC 253

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +D+A +VF+ +  R      W S+I+G A   +++ A  L+  MEEEGV+PD+  F  
Sbjct: 254 GGVDDALKVFNNLPRRDLIT--WTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +LKAC     +  G++VH      G   + +V  AL+ MY KCG +  A  VF+ +  ++
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           ++S+ +M+ G+  HG + EAF  F  MI +G +P+ V   SIL   +  S L+ G Q+H 
Sbjct: 372 VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
            +++ G   D  +  +L+ +Y+K G L  A  +F+ + +++VV+WN++I A   H K   
Sbjct: 432 RIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  F+ + ++G+ PD  TF S+L+ C    ++++G+ + S+++ + G    +     +V
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLII-RAGFESDLHIRNALV 550

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +++   G +  A ++  +  E +   V W  ++     HG
Sbjct: 551 SMFVNCGDLMSAMNLFNDMPERDL--VSWNTIIAGFVQHG 588



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 168/380 (44%), Gaps = 40/380 (10%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D+ +   ++ ++ GI   + TF S+L  C    A+E G  +  LI       +  I + L
Sbjct: 490 DNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNAL 549

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + ++   G +  A  +F+ M  R   +  WN++I+G+ + GE + A   +  M+E GV+P
Sbjct: 550 VSMFVNCGDLMSAMNLFNDMPERDLVS--WNTIIAGFVQHGENQFAFDYFKMMQESGVKP 607

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           DQ TF  +L ACA    +  G ++H          D  V   L+ MY KCG I  A  VF
Sbjct: 608 DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
             +  K++ S+ SM+TGY  HG   EA ++F  M   G  PD +     L   A+A L++
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIK 727

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G      +    +E  +     ++ ++ + G L                          
Sbjct: 728 EGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLL-------------------------- 761

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH- 428
             HEA+ +  +M+   V PD   + +LL AC     V++ E+   V  +K  + P  +  
Sbjct: 762 --HEAVEFINKMQ---VKPDSRLWGALLGACQVHLDVELAEK---VAQKKLELDPNDDGV 813

Query: 429 YACMVNLYGRAGLIDEAYSM 448
           Y  + N+Y  AG+  E   M
Sbjct: 814 YVILSNIYAAAGMWKEVTKM 833


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/503 (32%), Positives = 282/503 (56%), Gaps = 24/503 (4%)

Query: 44  TTFSSYPKSSPTPLLTNQ--KAFPKTKLQALDSIIQDLESS-------------VQNGIT 88
            T   Y K +     +NQ   + P   LQ+ ++II     S              ++G+ 
Sbjct: 251 ATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLG 310

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +   + +     C  +K    G+++H L   +L + N  +++ +L +Y   G + EA  V
Sbjct: 311 LDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLV 370

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F++M +R A +  WN++I+ + + G  E  ++L+  M + G+EPD+FT+  VLKACAG  
Sbjct: 371 FEEMVSRDAVS--WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQ 428

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G ++H   ++   G D FV  AL+DMY+KCG + KA  + DR+  + ++S+N++++
Sbjct: 429 ALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 488

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           G+       EA   F  M+  G DPD    ++IL   AN   + +G Q+H  ++++ ++ 
Sbjct: 489 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 548

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D  I+++L+ +YSK G +     +F+  P +D V+WN+++     H    EAL  FE M+
Sbjct: 549 DAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ 608

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            + V P+H TF+++L AC H+G V+ G   F  M+  YG+ P++EHY+C+V++ GR+G +
Sbjct: 609 LENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQV 668

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            +A  +I E M FEA  V+W  LL  C +HGNV + E AA  + +LEP++   + LL  I
Sbjct: 669 SKALELI-EGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNI 727

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
           Y NAG  ++V ++ +M+   GL+
Sbjct: 728 YANAGMWNEVTKLRKMMRFNGLK 750



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 219/485 (45%), Gaps = 90/485 (18%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
            + +TF+ + + C   KA+  G + H  +     +    +++ L+++Y     +  A +V
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKV 99

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY---------------FQMEEEGVEPD 193
           FD M  R   +  WN+++ GYA  G+   A  L+               F+M   G   D
Sbjct: 100 FDGMPQRDTVS--WNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFD 157

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF---------------------------- 225
           + TF  VLK+C+ L     G ++H  AV+ GF                            
Sbjct: 158 RTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGL 217

Query: 226 -------------------------GFDGFVLNALVDMYAKCGDIVK-ARTVFDRIGNKD 259
                                    G D  +  A +DMY KC ++   +  +F+ + N +
Sbjct: 218 ELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHN 277

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHG 316
           L SYN+++ GY      +EA  +FR +  +G   D V++S      ++++    G QVHG
Sbjct: 278 LQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHG 337

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHE 373
             ++   + ++C+AN+++ +Y K G L +AC +F+ M  +D VSWN+II AH +   + +
Sbjct: 338 LSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEK 397

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACM 432
            L  F  M + G+ PD  T+ S+L ACA   ++  G  + + +++ + G+   V     +
Sbjct: 398 TLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVG--IAL 455

Query: 433 VNLYGRAGLIDEAYSMIVEKME---FEASPVVWGALLYACYLHGNVCMGETAAQKLFEL- 488
           +++Y + G++++A     EK+     E + V W A++    L       +    K+ E+ 
Sbjct: 456 IDMYSKCGMMEKA-----EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 510

Query: 489 -EPDN 492
            +PDN
Sbjct: 511 VDPDN 515


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 264/449 (58%), Gaps = 13/449 (2%)

Query: 84   QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            + G+     TFAS+L  C   +A+E G ++H LI  + L+ +  + + L+ +Y   G + 
Sbjct: 580  KEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQ 639

Query: 144  EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            +A++VF  + +R   +  W ++I G+A+ GE   A  L++QM+ +G +P + TF  +LKA
Sbjct: 640  DAYEVFHSLRHRNVMS--WTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKA 697

Query: 204  CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            C     +  G+KV    +  G+  D  V NAL+  Y+K G +  AR VFD++ N+D++S+
Sbjct: 698  CMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSW 757

Query: 264  NSMLTGYIHHGLLVEAFDIF-----RGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318
            N M+ GY  +GL   A         +G++LN F    V+I +  ++ S L  G +VH  +
Sbjct: 758  NKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSF--VSILNACSSFSALEEGKRVHAEI 815

Query: 319  LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            ++R ++ D+ +  +LI +Y+K G L++A  +FD+  +K+VV+WN++I+A   H    +AL
Sbjct: 816  VKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKAL 875

Query: 376  IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             +F  M+++G+ PD  TF S+LSAC H G V  G R+FS +  ++G+SP +EHY C+V L
Sbjct: 876  DFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGL 935

Query: 436  YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             GRAG   EA ++I  +M F     VW  LL AC +HGNV + E AA    +L   N   
Sbjct: 936  LGRAGRFQEAETLI-NQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAV 994

Query: 496  FELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + LL  +Y  AGR DDV ++ R++  RG+
Sbjct: 995  YVLLSNVYAAAGRWDDVAKIRRVMEGRGI 1023



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 236/452 (52%), Gaps = 20/452 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+ +   T+ S+L  C   KA+  G  +H  I       +  I + L+ +YA  G +  
Sbjct: 379 DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPR 438

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F+ M  R   +  WN++I+GYA   +  +A+ LY QM+ EGV+P + TF  +L AC
Sbjct: 439 ARELFNTMPKRDLIS--WNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSAC 496

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                   G+ +H D +R G   +G + NAL++MY +CG I++A+ VF+    +D+IS+N
Sbjct: 497 TNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWN 556

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           SM+ G+  HG    A+ +F  M   G +PD +  +S+L    N   L +G Q+H  ++  
Sbjct: 557 SMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIES 616

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G++ D+ + N+LI +Y + G L  A  +F  +  ++V+SW ++I       +D +A   F
Sbjct: 617 GLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELF 676

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYG 437
            QM+ DG  P   TF S+L AC     +  G+++ + ++   Y +   V +   +++ Y 
Sbjct: 677 WQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYS 734

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NE 493
           ++G + +A   + +KM      + W  ++     +G   +G TA Q  ++++      N+
Sbjct: 735 KSGSMTDARK-VFDKMP-NRDIMSWNKMIAGYAQNG---LGGTALQFAYQMQEQGVVLNK 789

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +F  ++    +   L++ +RV   +V R ++
Sbjct: 790 FSFVSILNACSSFSALEEGKRVHAEIVKRKMQ 821



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 198/369 (53%), Gaps = 9/369 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+ +LL+       ++ G ++H+L     L  +  + + L  ++   G +  A
Sbjct: 279 GIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGA 338

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q  +  ++R    +  N+LI+  A+ G YE+A   Y+QM  +GV  ++ T+  VL AC+
Sbjct: 339 KQALEAFADRDVVVY--NALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACS 396

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  GE +H      G   D  + N+L+ MYA+CGD+ +AR +F+ +  +DLIS+N+
Sbjct: 397 TSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNA 456

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRG 322
           ++ GY       EA  +++ M   G  P  V    +L+   N+S    G  +H  +LR G
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           ++ +  +AN+L+ +Y + G + +A  +F+    +D++SWNS+I  H++      A   F 
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFL 576

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+++G+ PD +TF S+L  C +  ++++G ++  +++E  G+   V     ++N+Y R 
Sbjct: 577 EMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIES-GLQLDVNLGNALINMYIRC 635

Query: 440 GLIDEAYSM 448
           G + +AY +
Sbjct: 636 GSLQDAYEV 644



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 198/401 (49%), Gaps = 20/401 (4%)

Query: 77  QDLESSVQNGIT-VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +DL ++ Q   T      +  L++ C + +++    ++H  +    +  +  +S+ L+ +
Sbjct: 67  EDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINM 126

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y     + +AHQVF +M  R   +  WNSLIS YA+ G  + A  L+ +M+  G  P + 
Sbjct: 127 YVKCRSVSDAHQVFLKMPRRDVIS--WNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKI 184

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T+  +L AC     +  G+K+H   +  G+  D  V N+L++MY KC D+  AR VF  I
Sbjct: 185 TYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI 244

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
             +D++SYN+ML  Y     + E   +F  M   G  PD V   ++L      S+L  G 
Sbjct: 245 YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGK 304

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           ++H   +  G+  D+ +  +L  ++ + G +  A    +    +DVV +N++I A   H 
Sbjct: 305 RIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHG 364

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EA   + QM  DGV+ +  T++S+L+AC+   ++  GE + S  + + G S  V+  
Sbjct: 365 HYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHS-HISEVGHSSDVQIG 423

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL 466
             ++++Y R G +  A  +      F   P    + W A++
Sbjct: 424 NSLISMYARCGDLPRAREL------FNTMPKRDLISWNAII 458


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/437 (39%), Positives = 250/437 (57%), Gaps = 10/437 (2%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S+L++C    ++  G +LH  +  + L  +  +S+KL+ LYA  G +  A ++FD M  R
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
             F   WN LI  YA  G  E A+ LY  M E GVEPD FT+P VLKACA L  +  G +
Sbjct: 127 NVFL--WNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGRE 184

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH       +G D FV   +VDMYAKCG +  AR VFD I  +D + +NSM+  Y  +G 
Sbjct: 185 VHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGR 244

Query: 276 LVEAFDIFRGMILNGFDPDPVAI---SSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
            +EA  + R M  NG  P    +    S  A+A+ L  G ++HG+  RRG      +  S
Sbjct: 245 PMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTS 304

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG-VLP 388
           L+ +Y+K G +  A  LF+ + ++++VSWN++I     H    EAL  F +M+ D  V P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTP 364

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D++TFV +LSAC H G V+  +  F +MV  Y I P V+HY C++++ G  G  +EAY +
Sbjct: 365 DNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDL 424

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I + M  E    +WGALL  C +H NV +GE A QKL ELEP++  N+  L  IY  +G+
Sbjct: 425 I-KGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGK 483

Query: 509 LDDVERVERMLVDRGLE 525
            +   RV +++ +RGL+
Sbjct: 484 WEKAARVRKLMTNRGLK 500



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 170/365 (46%), Gaps = 34/365 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+     T+  +L+ C  L  +E G ++H+ +      ++  + + ++ +YA  G +
Sbjct: 155 VEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCV 214

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D+A  VFD ++ R A    WNS+I+ Y + G   +A+AL   M   G+ P   T    + 
Sbjct: 215 DDARAVFDGIAVRDAVV--WNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVS 272

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A A    +  G ++H    R GFG    +  +LVDMYAK G +  AR +F+++  ++L+S
Sbjct: 273 AAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVS 332

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           +N+M+ GY  HG   EA  +F  M  +    PD +    +L+  +        HG ++  
Sbjct: 333 WNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACN--------HGGMVEE 384

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQM 381
             E+   + N+    YS    +     + D            ++    +  EA    + M
Sbjct: 385 AKEFFYLMVNA----YSIKPTVQHYTCVID------------VLGHTGRFEEAYDLIKGM 428

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAG 440
               + PD   + +LL+ C    +V++GE     ++E   + P    +Y  + N+Y ++G
Sbjct: 429 S---IEPDSGIWGALLNGCKIHKNVELGELALQKLIE---LEPEDAGNYVHLSNIYAQSG 482

Query: 441 LIDEA 445
             ++A
Sbjct: 483 KWEKA 487


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/447 (37%), Positives = 249/447 (55%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             G+     T+  +L+ C  L A++ G ++H  I    L  +  + + LLR+Y   G I+
Sbjct: 122 HEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSIN 181

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA ++FD + N    +  W  +I  YA+ G  ++A  L  QME+EG +P+  T+  +L A
Sbjct: 182 EARRIFDNLMNHDIIS--WTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA 239

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA  G ++  ++VH  A+  G   D  V  ALV MYAK G I  AR VFDR+  +D++S+
Sbjct: 240 CASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSW 299

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N M+  +  HG   EA+D+F  M   G  PD +   SIL   A+A  L    ++H   L 
Sbjct: 300 NVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALD 359

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G+E D+ +  +L+ +YSK G +D A  +FD M  ++VVSWN++I     H    +AL  
Sbjct: 360 SGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEV 419

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M   GV PD +TFV++LSAC+H G V  G   +  M + YGI P V H  CMV+L G
Sbjct: 420 FRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLG 479

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + EA  + ++ M  +     WGALL +C  +GNV +GE  A++  +L+P N   + 
Sbjct: 480 RAGRLMEA-KLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYV 538

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  IY  AG+ D V  V  M+ +RG+
Sbjct: 539 LLSNIYAEAGKWDMVSWVRTMMRERGI 565



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/410 (32%), Positives = 223/410 (54%), Gaps = 11/410 (2%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
             L   I  L + +Q G+   +  +  +L+ C + K +    ++H  I  + + +N  + 
Sbjct: 7   NTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM 66

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + LL +Y   G + EA  VFD +  ++  +  WN++I+GY E    EDA+ L+ +M  EG
Sbjct: 67  NNLLHVYIECGRLQEARCVFDALVKKSGAS--WNAMIAGYVEHKHAEDAMRLFREMCHEG 124

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V+P+  T+  +LKACA L  ++ G++VH      G   D  V  AL+ MY KCG I +AR
Sbjct: 125 VQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEAR 184

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            +FD + N D+IS+  M+  Y   G   EA+ +   M   GF P+ +   SIL   A+  
Sbjct: 185 RIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L+   +VH   L  G+E D+ +  +L+ +Y+K G +D A  +FD M  +DVVSWN +I 
Sbjct: 245 ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIG 304

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           A   H + HEA   F QM+ +G  PD + F+S+L+ACA  G+++  +++    ++  G+ 
Sbjct: 305 AFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS-GLE 363

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             V     +V++Y ++G ID+A  ++ ++M+   + V W A++     HG
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDA-RVVFDRMKVR-NVVSWNAMISGLAQHG 411



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 187/359 (52%), Gaps = 16/359 (4%)

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +AI +     + G+  D F +  VLK C     +   ++VH   ++     +  V+N L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
            +Y +CG + +AR VFD +  K   S+N+M+ GY+ H    +A  +FR M   G  P+  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
               IL   A+ S L+ G +VH  +   G+E D+ +  +L+ +Y K G +++A  +FD++
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 354 PQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
              D++SW  +I A+++     EA     QME++G  P+ +T+VS+L+ACA  G++K  +
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           R+    ++  G+   V     +V +Y ++G ID+A  ++ ++M+     V W  ++ A  
Sbjct: 251 RVHRHALDA-GLELDVRVGTALVQMYAKSGSIDDA-RVVFDRMKVR-DVVSWNVMIGAFA 307

Query: 471 LHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            HG    G  A     +++ +    +   F  ++    +AG L+ V+++ R  +D GLE
Sbjct: 308 EHGR---GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 288/501 (57%), Gaps = 32/501 (6%)

Query: 50  PKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTE-----------TFASLL 98
           P+ S  P + +    P       + +IQ L    Q  +T   E           T+  L+
Sbjct: 20  PRPSLKPPICSITLNPTASTADNNKLIQSL--CKQGNLTQALELLSLEPNPAQHTYELLI 77

Query: 99  ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158
            +C    ++    ++HR +  N   ++  +++KL+ +Y+ F  ID A +VFD+  NRT +
Sbjct: 78  LSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIY 137

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRVGE 214
            +  N+L    +  G  E+ + +Y +M   G+  D+FT+  VLKAC      + L+  G 
Sbjct: 138 VY--NALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGR 195

Query: 215 KVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           ++H   +R G+  DG+V  +  LVDMYAK G +  A  VF+++  K+++S+++M+  Y  
Sbjct: 196 EIHAHILRHGY--DGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAK 253

Query: 273 HGLLVEAFDIFRGMILNGFD--PDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDL 327
           +G   EA ++FR ++L   D  P+ V + S+L   + L    Q   +HG++LR+G++  L
Sbjct: 254 NGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSIL 313

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + ++L+ +Y++ GKL+    +FD M ++DVVSWNS+I +   H    +A+  FE+M  +
Sbjct: 314 PVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYN 373

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           GV P  ++FVS+L AC+H G V  G+ LF+ M   +GI P VEHYACMV+L GRA  ++E
Sbjct: 374 GVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEE 433

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A + I+E M  E  P VWG+LL +C +H NV + E A+ +LF+LEP N  N+ LL  IY 
Sbjct: 434 A-AKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYA 492

Query: 505 NAGRLDDVERVERMLVDRGLE 525
            AG  D V+RV+++L  RGL+
Sbjct: 493 EAGMWDGVKRVKKLLEARGLQ 513


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 265/448 (59%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+ +   + +     C  +K    G+++H L   +L + N  +++ +L +Y   G + 
Sbjct: 369 KSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALV 428

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA  VF++M +R A +  WN++I+ + + G  E  ++L+  M + G+EPD+FT+  VLKA
Sbjct: 429 EACLVFEEMVSRDAVS--WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKA 486

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CAG   +  G ++H   ++   G D FV  AL+DMY+KCG + KA  + DR+  + ++S+
Sbjct: 487 CAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSW 546

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N++++G+       EA   F  M+  G DPD    ++IL   AN   + +G Q+H  +++
Sbjct: 547 NAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK 606

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
           + ++ D  I+++L+ +YSK G +     +F+  P +D V+WN+++     H    EAL  
Sbjct: 607 KELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKI 666

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE M+ + V P+H TF+++L AC H+G V+ G   F  M+  YG+ P++EHY+C+V++ G
Sbjct: 667 FEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMG 726

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R+G + +A  +I E M FEA  V+W  LL  C +HGNV + E AA  + +LEP++   + 
Sbjct: 727 RSGQVSKALELI-EGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYV 785

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  IY NAG  ++V ++ +M+   GL+
Sbjct: 786 LLSNIYANAGMWNEVTKLRKMMRFNGLK 813



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 221/419 (52%), Gaps = 21/419 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G      TFA +L++C  L+    GI++H L        +    S LL +YA    +D +
Sbjct: 169 GTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCS 228

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q F  M  +   +  W+++I+G  +  +    + L+ +M++ GV   Q TF  V ++CA
Sbjct: 229 IQFFHSMPEKNWVS--WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL  +R+G ++H  A++  FG D  +  A +DMY KC ++  A+ +F+ + N +L SYN+
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRG 322
           ++ GY      +EA  +FR +  +G   D V++S      ++++    G QVHG  ++  
Sbjct: 347 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 406

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFE 379
            + ++C+AN+++ +Y K G L +AC +F+ M  +D VSWN+II AH +   + + L  F 
Sbjct: 407 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFV 466

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGR 438
            M + G+ PD  T+ S+L ACA   ++  G  + + +++ + G+   V     ++++Y +
Sbjct: 467 WMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVG--IALIDMYSK 524

Query: 439 AGLIDEAYSMIVEKME---FEASPVVWGALLYACYLHGNVCMGETAAQKLFEL--EPDN 492
            G++++A     EK+     E + V W A++    L       +    K+ E+  +PDN
Sbjct: 525 CGMMEKA-----EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 578



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 189/363 (52%), Gaps = 33/363 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q+G+     T+ S+L+ C   +A+  G+++H  I  + L  +  +   L+ +Y+  G++
Sbjct: 469 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMM 528

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A ++ D+++ +T  +  WN++ISG++   + E+A   + +M E GV+PD FT+  +L 
Sbjct: 529 EKAEKLHDRLAEQTVVS--WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILD 586

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA L  + +G+++H   ++     D ++ + LVDMY+KCG++   + +F++  N+D ++
Sbjct: 587 TCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVT 646

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           +N+M+ GY  HGL  EA  IF  M L    P+     ++L         A  H  ++ +G
Sbjct: 647 WNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLR--------ACGHMGLVEKG 698

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           + +     +S++  Y  D +L+    + D M +   VS            +AL   E M 
Sbjct: 699 LHY----FHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS------------KALELIEGMP 742

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGL 441
            +    D + + +LLS C   G+V+V E+    +++   + P     Y  + N+Y  AG+
Sbjct: 743 FEA---DAVIWRTLLSICKIHGNVEVAEKAAYSILQ---LEPEDSAAYVLLSNIYANAGM 796

Query: 442 IDE 444
            +E
Sbjct: 797 WNE 799



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 173/349 (49%), Gaps = 19/349 (5%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G I  A ++FD M  R   +  WNSLISGY   G++   I ++ QM   G   D+ 
Sbjct: 118 YAGRGDIGVAQKLFDAMPERDVVS--WNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRT 175

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF  VLK+C+ L     G ++H  AV+ GF  D    +AL+DMYAKC  +  +   F  +
Sbjct: 176 TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
             K+ +S+++++ G + +  L    ++F+ M   G        +S+    A  S LR+G+
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
           Q+HG  L+     D+ I  + + +Y K   L  A  LF+ +P  ++ S+N+II  +++  
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 373 ---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EAL  F  +++ G+  D ++      ACA    V  G+ L  + V    +    +  
Sbjct: 356 KGIEALGMFRLLQKSGLGLDEVSLSGAFRACA----VIKGD-LEGLQVHGLSMKSLCQSN 410

Query: 430 ACMVN----LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            C+ N    +YG+ G + EA  ++ E+M      V W A++ A   +GN
Sbjct: 411 ICVANAILDMYGKCGALVEA-CLVFEEM-VSRDAVSWNAIIAAHEQNGN 457



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 37/254 (14%)

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------------- 242
           TF  + + C+    +  G++ H   +   F    FV N L+ MY KC             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 243 ------------------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
                             GDI  A+ +FD +  +D++S+NS+++GY+H+G   +  D+F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 285 GMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M   G   D    + +L + S L     G Q+HG  ++ G + D+   ++L+ +Y+K  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLS 398
           KLD +   F  MP+K+ VSW++II    ++ +    L  F++M++ GV     TF S+  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 399 ACAHLGSVKVGERL 412
           +CA L ++++G +L
Sbjct: 284 SCAGLSALRLGSQL 297



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 45/197 (22%)

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII----- 365
           G Q H  ++    +  + + N LI +Y K   L+ A  +FD MPQ+D VSWN+++     
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 366 ----------------------------HAHSKDHEALI-YFEQMERDGVLPDHLTFVSL 396
                                       + H+ DH  +I  F QM R G + D  TF  +
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L +C+ L     G ++  + V K G    V   + ++++Y +   +D +         F 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAV-KMGFDCDVVTGSALLDMYAKCKKLDCSIQF------FH 233

Query: 457 ASP----VVWGALLYAC 469
           + P    V W A++  C
Sbjct: 234 SMPEKNWVSWSAIIAGC 250


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/404 (38%), Positives = 247/404 (61%), Gaps = 11/404 (2%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  YA+ G I+ AH++FD++  +   +  WN+ ISGYAE G Y++A+ L+ +M +  
Sbjct: 173 TALITGYASRGXIESAHKMFDEIPVKDVVS--WNAXISGYAETGNYKEALELFKKMMKTN 230

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD+ T   VL ACA  G I +G +VH      GFG +  ++NAL+D+Y+KCG++  A 
Sbjct: 231 VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETAC 290

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            +F  + NKD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V + SIL   A+  
Sbjct: 291 GLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLG 350

Query: 307 LLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  +FD M  + + SWN++
Sbjct: 351 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAM 410

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H + + A   F +M ++G+ PD +TFV LLSAC+H G + +G  +F  M   Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYK 470

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P++EHY CM++L G +GL  EA  MI   ME E   V+W +LL AC +HGNV +GE+ 
Sbjct: 471 LMPKLEHYGCMIDLXGHSGLFKEAEKMI-NTMEMEPDGVIWCSLLKACKMHGNVELGESY 529

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AQ L ++EP+N  ++ LL  IY  A R ++V +   +L D+G++
Sbjct: 530 AQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMK 573



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 231/463 (49%), Gaps = 61/463 (13%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR---LYATFGLIDEAHQVFDQM 152
           SLL  C  L+++   I   ++I T L   N  +S KLL    L   F  +  A  VFD +
Sbjct: 7   SLLHXCKTLQSLR--IIHAQMIKTGLHNTNYALS-KLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WN++  G+A   +   A+ LY  M   G+ P+ +TFP +LK+CA     + 
Sbjct: 64  --QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKE 121

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++FGF  D ++  +L+ MY + G +  A+ V D+  ++D++SY +++TGY  
Sbjct: 122 GQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYAS 181

Query: 273 HGLL-------------------------------VEAFDIFRGMILNGFDPDPVAISSI 301
            G +                                EA ++F+ M+     PD   + ++
Sbjct: 182 RGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L   A +  + +G QVH W+   G   +L I N+LI +YSK G+L+ AC LF  +  KDV
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDV 301

Query: 359 VSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SWN++I  ++  +   EAL+ F+ M R G  P+ +T +S+LSACAHLG++ +G R   V
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG-RWIHV 360

Query: 416 MVEKY--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++K   G++        ++++Y + G I EA   + + M    S   W A+++   +HG
Sbjct: 361 YIDKRLKGVTNASSLRTSLIDMYAKCGDI-EAAQQVFDSM-LNRSLSSWNAMIFGFAMHG 418

Query: 474 NVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
                  AA  +F       +EPD+   F  L+    ++G LD
Sbjct: 419 RA----NAAFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLD 456



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 173/362 (47%), Gaps = 39/362 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  +     T  ++L  C Q  ++E G ++H  I  +    N  I + L+ LY+  G +
Sbjct: 227 MKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGEL 286

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F  +SN+   +  WN+LI GY  +  Y++A+ L+  M   G +P+  T   +L 
Sbjct: 287 ETACGLFQGLSNKDVIS--WNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILS 344

Query: 203 ACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           ACA LG I +G  +H  +D    G      +  +L+DMYAKCGDI  A+ VFD + N+ L
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+N+M+ G+  HG    AFDIF  M  NG +PD +    +L+  S        H  +L 
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS--------HSGMLD 456

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIY 377
            G      I  S+   Y    KL+    + D             +  HS   K+ E +I 
Sbjct: 457 LGRH----IFRSMTRDYKLMPKLEHYGCMID-------------LXGHSGLFKEAEKMIN 499

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             +ME DGV+     + SLL AC   G+V++GE     +++    +P    Y  + N+Y 
Sbjct: 500 TMEMEPDGVI-----WCSLLKACKMHGNVELGESYAQNLIKIEPENP--GSYVLLSNIYA 552

Query: 438 RA 439
            A
Sbjct: 553 TA 554


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 271/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++  + TF  L ++C + KA + G ++H  I    L  +  + + L+ +YA  G++++A
Sbjct: 73  GLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDA 132

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD  S+R   ++                              WN++ISGYAE+G Y+
Sbjct: 133 HKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYK 192

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V+PD+ T   VL  C   G + +G ++H      GFG +  ++NAL+
Sbjct: 193 EALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALI 252

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++ +A  +F+ +  KD+IS+N+++ GY +     EA  +F+ M+  G  P+ V
Sbjct: 253 DLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDV 312

Query: 297 AISSIL---ANASLLRIGAQVHGWVLR--RGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +  +G+  +  +  SLI +Y+K G ++ A  +FD
Sbjct: 313 TMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFD 372

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +  K + S N++I     H +   A     +M++DG+ PD +TFV LLSAC+H G   +
Sbjct: 373 TILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDL 432

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G ++F  M   Y I P++EHY CM++L GR+GL  EA  +I   M  E   V+WG+LL A
Sbjct: 433 GRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELI-NSMTMEPDGVIWGSLLKA 491

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +H N+ +GE  AQKL ++EP N  ++ LL  IY  + R DDV RV  +L D+GL+
Sbjct: 492 CKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLK 548



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 192/375 (51%), Gaps = 46/375 (12%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WN++I G+A   +   A+ LY  M   G+ P+ +TFP + K+CA     + G+++H  
Sbjct: 44  LSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQ 103

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL--- 276
            +++G   D  V  +L+ MYA+ G +  A  VFD   ++D++SY +M+TGY   G +   
Sbjct: 104 ILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKA 163

Query: 277 ----------------------------VEAFDIFRGMILNGFDPDPVAISSILANASL- 307
                                        EA ++F  M+     PD   ++++L+  +  
Sbjct: 164 QKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHS 223

Query: 308 --LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             + +G Q+H W+   G   +L + N+LI +YSK G++++A  LF+ +  KDV+SWN++I
Sbjct: 224 GNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLI 283

Query: 366 --HAHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--Y 420
             +A+   H EAL+ F++M + G  P+ +T +S+L ACAHLG++ +G R   V ++K   
Sbjct: 284 GGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKKLK 342

Query: 421 GISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           GI         ++++Y + G I+ A   +  I+ K     + +++G   +A +   +   
Sbjct: 343 GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG---FAMHGRADAAF 399

Query: 478 GETAAQKLFELEPDN 492
              +  K   +EPD+
Sbjct: 400 DLLSRMKKDGIEPDD 414



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 125/256 (48%), Gaps = 40/256 (15%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A +VF  I   + +S+N+M+ G+      + A +++  MI  G  P+      +    A 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD------------------------ 340
           +   + G Q+H  +L+ G+  DL +  SLI +Y+++                        
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 341 -------GKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDH 390
                  G +D+A  +FD +P KDVVSWN++I  ++   +  EAL  F +M +  V PD 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
            T  ++LS C H G+V++G ++ S  ++ +G    ++    +++LY + G ++ A+ +  
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHS-WIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLF- 268

Query: 451 EKMEFEASPVVWGALL 466
           E ++++   + W  L+
Sbjct: 269 EGLQYK-DVISWNTLI 283



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 87/174 (50%), Gaps = 19/174 (10%)

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSA 399
           L  A  +F  + + + +SWN++I  H+   +   AL  +  M   G+ P+  TF  L  +
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           CA   + + G+++ + ++ KYG++  +  +  ++++Y + G++++A+ +      F+ S 
Sbjct: 88  CAKSKAAQEGKQIHAQIL-KYGLTVDLHVHTSLISMYAQNGIVEDAHKV------FDTSS 140

Query: 460 ----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE-HNFELLIKIYGNAGR 508
               V + A++      GN+      AQK+F+  P  +  ++  +I  Y   GR
Sbjct: 141 HRDVVSYTAMITGYASRGNM----DKAQKMFDEIPIKDVVSWNAMISGYAEIGR 190


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 264/476 (55%), Gaps = 22/476 (4%)

Query: 63  AFPKTKLQALDSII-------------QDLESSVQNGITVQTETFASLLETCYQLKAVEH 109
           + PK  LQ  ++II             Q  +  +++G+     + +     C  +K    
Sbjct: 337 SLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD 396

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G +LH L   + LR N  +++ +L +Y     + EA  +FD+M  R A +  WN++I+ +
Sbjct: 397 GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVS--WNAVIAAH 454

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            + G  E+ + L+  M    +EPDQFT+  VLKAC+    +  G ++H   ++ G G D 
Sbjct: 455 EQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDS 514

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV  AL+DMY KCG I +A+ + DRI  + ++S+N+++ G+       +A   F  M+  
Sbjct: 515 FVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKM 574

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
              PD    + +L   AN + + +G Q+HG +++  +  D+ I ++L+ +YSK G +  +
Sbjct: 575 SVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDS 634

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F+  P KD V+WN++I     H    EAL YFE+M+ + V P+H TFVS+L ACAH+
Sbjct: 635 ALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHM 694

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G +  G   F+ M+ +YG+ P++EHY+CM+++ GR+G I EA  +I E M FEA  V+W 
Sbjct: 695 GFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQE-MPFEADAVIWR 753

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            LL  C +HGN+ + E A   + +LEP++     LL  IY +AG    V  + +M+
Sbjct: 754 TLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMM 809



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 209/380 (55%), Gaps = 11/380 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA +L+ C  L+    GI++H LI      K+    S LL +YA    +D++ ++F ++
Sbjct: 178 TFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEI 237

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      W+++I+G  +  E+   + L+ +M++ G+   Q  +  V ++CAGL  ++V
Sbjct: 238 PVKNWVC--WSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKV 295

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++  FG D  V  A +DMYAKCG +  A+ +F+ +    L  YN+++ G + 
Sbjct: 296 GTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVR 355

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCI 329
           +    EA   F+ ++ +G   + +++S   +  + ++    G Q+H   ++  +  ++C+
Sbjct: 356 NEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICV 415

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
           ANS++ +Y K   L +AC +FD M ++D VSWN++I AH +   + E L  F  M R  +
Sbjct: 416 ANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRM 475

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  T+ S+L AC+   ++  G  + + ++ K G+         ++++Y + G+I+EA 
Sbjct: 476 EPDQFTYGSVLKACSSQQALNSGMEIHNRII-KSGLGLDSFVGGALIDMYCKCGMIEEA- 533

Query: 447 SMIVEKMEFEASPVVWGALL 466
             I +++E + + V W A++
Sbjct: 534 KKIHDRIE-QQTMVSWNAII 552



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 224/455 (49%), Gaps = 27/455 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI V    +AS+  +C  L A++ G +LH          +  + +  L +YA  G + +A
Sbjct: 272 GIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADA 331

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F+ +   +   +  N++I G     +  +A+  +  + + G+  ++ +      ACA
Sbjct: 332 QRIFNSLPKHSLQCY--NAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G ++H  +V+     +  V N+++DMY KC  + +A  +FD +  +D +S+N+
Sbjct: 390 SIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNA 449

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           ++  +  +G   E  ++F  M+    +PD     S+L   S    L  G ++H  +++ G
Sbjct: 450 VIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSG 509

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-----HSKDHEALIY 377
           +  D  +  +LI +Y K G +++A  + D + Q+ +VSWN+II       HS+D  +  +
Sbjct: 510 LGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHS--F 567

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M +  V PD+ T+  +L ACA+L SV +G+++   ++ K  +   V   + +V++Y 
Sbjct: 568 FYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQII-KLELHSDVYITSTLVDMYS 626

Query: 438 RAGLIDEAYSMIVEKMEFEASP----VVWGALL--YACYLHGNVCMGETAAQKLFELEPD 491
           + G + ++       + FE +P    V W A++  YA +  G   +G     +L  + P 
Sbjct: 627 KCGNMQDS------ALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRP- 679

Query: 492 NEHNFELLIKIYGNAGRLDD-VERVERMLVDRGLE 525
           N   F  +++   + G +D  +     ML + GLE
Sbjct: 680 NHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLE 714



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 226/480 (47%), Gaps = 44/480 (9%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           Q  +  +  TF+ +++ C    +++ G + H R+I +  +  +  IS+ L+++Y     +
Sbjct: 36  QTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFI-PDVYISNCLMKMYLRCSHL 94

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
           + A++VF++MS R   ++                              WNS++SG+ + G
Sbjct: 95  NYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNG 154

Query: 174 EYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           E   +I ++  M   E V  DQ TF  VLKAC+ L    +G +VH   VR GF  D    
Sbjct: 155 ECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTG 214

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           +AL+DMYAKC  +  +  +F  I  K+ + +++++ G + +   +   ++F+ M   G  
Sbjct: 215 SALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIG 274

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
                 +S+    A  S L++G Q+H   L+     D+ +  + + +Y+K G L  A  +
Sbjct: 275 VSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRI 334

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F+ +P+  +  +N+II     + K  EAL +F+ + + G+  + ++     SACA +   
Sbjct: 335 FNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGD 394

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G +L S+ V K  +   +     ++++YG+   + EA  M  E    +A  V W A++
Sbjct: 395 LDGRQLHSLSV-KSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDA--VSWNAVI 451

Query: 467 YACYLHGN--VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A   +GN    +   A+     +EPD +  +  ++K   +   L+    +   ++  GL
Sbjct: 452 AAHEQNGNEEETLNLFASMLRLRMEPD-QFTYGSVLKACSSQQALNSGMEIHNRIIKSGL 510


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 257/447 (57%), Gaps = 11/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+  +   C  L  + HG   H  +  + L  +  +   L+ +Y+  G +  A
Sbjct: 121 GIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCA 180

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD++S +   +  WNS+ISGY+ +G   DA+ L+ +M + G EPD+ T   +L AC 
Sbjct: 181 RRVFDEISEKDLVS--WNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACG 238

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG + +G  +    V      + FV +AL+ MY KCGD+  AR VFDR+  KD++++N+
Sbjct: 239 DLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNA 298

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+TGY  +G+  EA  +F GM  +G +PD + +  +L   A+   L  G  +  +   RG
Sbjct: 299 MITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERG 358

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           ++ D+ ++ +LI +Y+K G LD A  +F+ MPQK+ VSWN++I A   H +  E+L  F+
Sbjct: 359 LQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFK 418

Query: 380 QMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           +M ++G  V P+ ++F+ +LSAC H G V  G +LF +M   +G+ P++EH++CMV+L  
Sbjct: 419 RMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLA 478

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + EA+  I EKM  +   VV GALL AC    NV + E     L E+EP N  N+ 
Sbjct: 479 RAGHVHEAWDFI-EKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYI 537

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  KI+ N  R DD  R+  ++  RG+
Sbjct: 538 ISSKIFANMKRWDDSARMRVLMRQRGV 564



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 218/402 (54%), Gaps = 19/402 (4%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L  S ++     T+   SLL+ C   K+++   ++H  +  N + K     + LL  +  
Sbjct: 19  LAKSQRHAQQTLTDKLLSLLKQCTSTKSLQ---QIHTQMIINAIHK----PNFLLHRFID 71

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE-YEDAIALYFQMEEEGVEPDQFTF 197
               + A  +F Q+     +AF  N +I G     + +   I  Y+QM++ G+ P+ FT+
Sbjct: 72  LKDFNNASLLFSQIPYPNEYAF--NIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTY 129

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           P V  ACA L ++  G+  H   ++ G   DG V ++L+ MY++CG++  AR VFD I  
Sbjct: 130 PFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISE 189

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV 314
           KDL+S+NSM++GY   G   +A  +F  M   GF+PD + + SIL    +   L +G+ +
Sbjct: 190 KDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWI 249

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--- 371
            G+V+   ++ +  + ++LI +Y K G L  A  +FD M +KDVV+WN++I  ++++   
Sbjct: 250 EGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVS 309

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EA+I F  M   GV PD +T V +LSACA +G++  G+ L +   E+ G+   +     
Sbjct: 310 DEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASER-GLQNDIYVSTA 368

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++++Y + G +D+A   + E M  + + V W A++ A   HG
Sbjct: 369 LIDMYAKCGSLDDALR-VFEDMP-QKNEVSWNAMISALAFHG 408


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 254/447 (56%), Gaps = 10/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+ +   T+ S+L  C   KA+E G  +H  I  +    +  I + L+ +YA  G + +
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F  M  R   +  WN++I+GYA   +  +A+ LY QM+ EGV+P + TF  +L AC
Sbjct: 384 ARELFYTMPKRDLIS--WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A       G+ +H D +R G   +G + NAL++MY +CG +++A+ VF+    +D+IS+N
Sbjct: 442 ANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWN 501

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           SM+ G+  HG    A+ +F+ M     +PD +  +S+L+   N   L +G Q+HG +   
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G++ D+ + N+LI +Y + G L  A  +F  +  +DV+SW ++I       +D +A+  F
Sbjct: 562 GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELF 621

Query: 379 EQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
            QM+ +G   PD  TF S+LSAC H G V  G ++FS M  +YG+ P +EHY C+V L G
Sbjct: 622 WQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLG 681

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RA    EA ++I  +M F     VW  LL AC +HGN+ + E AA    +L   N   + 
Sbjct: 682 RARRFQEAETLI-NQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYI 740

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  +Y  AGR DDV ++ R++  RG+
Sbjct: 741 LLSNVYAAAGRWDDVAKIRRVMEGRGI 767



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 192/362 (53%), Gaps = 9/362 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ +LL+ C + + +    ++H  +    +  +  +S+ L+ +Y     + +AHQVF +M
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WNSLIS YA+ G  + A  L+ +M+  G  P++ T+  +L AC     +  
Sbjct: 89  PRRDVIS--WNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELEN 146

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+K+H   ++ G+  D  V N+L+ MY KCGD+ +AR VF  I  +D++SYN+ML  Y  
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
              + E   +F  M   G  PD V   ++L      S+L  G ++H   +  G+  D+ +
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +L+ +  + G +D A   F  +  +DVV +N++I A   H  + EA   + +M  DGV
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             +  T++S+L+AC+   +++ G+ + S + E  G S  V+    ++++Y R G + +A 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKAR 385

Query: 447 SM 448
            +
Sbjct: 386 EL 387



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 206/394 (52%), Gaps = 11/394 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI+    T+ +LL+       ++ G ++H+L     L  +  + + L+ +    G +D A
Sbjct: 224 GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q F  +++R    +  N+LI+  A+ G   +A   Y++M  +GV  ++ T+  +L AC+
Sbjct: 284 KQAFKGIADRDVVVY--NALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G+ +H      G   D  + NAL+ MYA+CGD+ KAR +F  +  +DLIS+N+
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ GY       EA  +++ M   G  P  V    +L   AN+S    G  +H  +LR G
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           ++ +  +AN+L+ +Y + G L +A  +F+    +DV+SWNS+I  H++      A   F+
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+ + + PD++TF S+LS C +  ++++G+++   + E  G+   V     ++N+Y R 
Sbjct: 522 EMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRC 580

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G + +A ++       +   + W A++  C   G
Sbjct: 581 GSLQDARNVFHSLQHRDV--MSWTAMIGGCADQG 612



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 154/291 (52%), Gaps = 9/291 (3%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
            E D+ T+  +L+ C    L+   +++H   V  G G D F+ N L++MY KC  ++ A 
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NAS 306
            VF  +  +D+IS+NS+++ Y   G   +AF +F  M   GF P+ +   SIL    + +
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G ++H  +++ G + D  + NSL+ +Y K G L +A  +F  +  +DVVS+N+++ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            +++     E L  F QM  +G+ PD +T+++LL A      +  G+R+  + VE+ G++
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GLN 261

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             +     +V +  R G +D A      K   +   VV+ AL+ A   HG+
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAF--KGIADRDVVVYNALIAALAQHGH 310


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 259/447 (57%), Gaps = 11/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+  L   C  ++ + HG   H L+    L  ++ ++  L+ +YA  G +  A
Sbjct: 123 GLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFA 182

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD+M +R   +  WNS+ISGY+++G  ++AI L+ +M EEG EPD+ T   VL AC 
Sbjct: 183 RKVFDEMGDRDLVS--WNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACG 240

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG + +G  V    +      + ++ +AL+DMY KCGD++ AR VFD + NKD++++N+
Sbjct: 241 DLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNA 300

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG 322
           ++TGY  +G   EA  +F GM   G  PD V +  +L+  S    L +G  V      +G
Sbjct: 301 IITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKG 360

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           ++ D+ +A++LI +Y+K G LD A  +F+ MP K+ VSWN++I A   H +  EAL  F 
Sbjct: 361 LQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFR 420

Query: 380 QMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           +M +D   V P+ +TF+ +LSAC H G V  G +LF  M   +G+ P+VEHY+CMV+L  
Sbjct: 421 RMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCA 480

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAGL+ EA+ +I +KM  +   +V G+LL AC    N  +GE   Q   E+E  N  N+ 
Sbjct: 481 RAGLLYEAWDLI-KKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYV 539

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  KIY N  R DD  ++  ++   G+
Sbjct: 540 ISSKIYANMRRWDDSAKMRVLMRQCGV 566



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 219/394 (55%), Gaps = 27/394 (6%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           TE   SL++ C     ++   ++H  +  N + K   + SK++ L      +  A  VF+
Sbjct: 33  TEKLLSLIKQCKSKNLLK---QIHAQMLINSIPKPNFLLSKIIDLKD----LAYASLVFN 85

Query: 151 QMSNRTAFAFPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           Q++    +AF  N ++ G A    +Y+  + LY++++  G++ + FT+P +  AC  +  
Sbjct: 86  QLTKPNIYAF--NVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRG 143

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +  G+  H    + G   D +V ++L+ MYA+CG++  AR VFD +G++DL+S+NSM++G
Sbjct: 144 LVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISG 203

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           Y   G   EA  +F  M   GF+PD + + S+L    +   L +G  V G+VL + +E +
Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
             + ++LI +Y K G L  A  +FD MP KDVV+WN+II  ++++   +EA++ F  M  
Sbjct: 264 SYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMRE 323

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G  PD +T + +LSAC+ +G++ +G+ + +   EK G+   V   + ++++Y + G +D
Sbjct: 324 AGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEK-GLQHDVYVASALIDMYAKCGSLD 382

Query: 444 EAYSMIVEKMEFEASP----VVWGALLYACYLHG 473
           +A  +      FE+ P    V W A++ A   HG
Sbjct: 383 DAVRV------FESMPHKNEVSWNAMISALAFHG 410



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G      T  S+L  C  L  +  G  +   +    +  N  + S L+ +Y   G + 
Sbjct: 222 EEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLI 281

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD M N+      WN++I+GYA+ G   +AI L+  M E G  PD+ T   VL A
Sbjct: 282 SARRVFDSMPNKDVVT--WNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSA 339

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ +G + +G+ V   A   G   D +V +AL+DMYAKCG +  A  VF+ + +K+ +S+
Sbjct: 340 CSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSW 399

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQV-HGW 317
           N+M++    HG   EA  +FR M  +     P     + + S   +A L+  G Q+    
Sbjct: 400 NAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESM 459

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377
            L  G+   +   + ++ + ++ G L +A  L   MP K                     
Sbjct: 460 NLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGK--------------------- 498

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
                     PD +   SLL AC    +  VGER+  + +E
Sbjct: 499 ----------PDEIVLGSLLGACQRRRNADVGERVIQLFLE 529


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 173/439 (39%), Positives = 259/439 (58%), Gaps = 10/439 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + S+L++C   +++  G +LH  +  + L  +  +++KL+ LYA  GL+  A ++FD M 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R  F   WN LI  YA  G +E AI LY  M + GVEPD FT+P  LKACA L  +  G
Sbjct: 125 KRNVFL--WNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETG 182

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +VH   +   +G D FV   LVDMYAKCG +  AR VFDRI  +D + +NSM+  Y  +
Sbjct: 183 REVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQN 242

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G  +EA  + R M  NG  P    + S ++   +A+ L  G ++HG+  RRG +    + 
Sbjct: 243 GRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLK 302

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG-V 386
            SL+ +Y+K G +  A  LF+ + ++++VSWN++I     H    EAL  F +M  +  V
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQV 362

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD++TFV +LSAC H G VK  +  F +MV+ Y I P V+H+ C+V++ G AG  +EAY
Sbjct: 363 TPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAY 422

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I + M  +    +WGALL  C +H NV +GE A QKL ELEP++  N+ LL  IY  +
Sbjct: 423 DLI-KGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQS 481

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+ +   RV +++ +RGL+
Sbjct: 482 GKWEKAARVRKLMTNRGLK 500



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 168/372 (45%), Gaps = 34/372 (9%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           IQ     V  G+     T+   L+ C  L  +E G ++H  +      ++  + + L+ +
Sbjct: 148 IQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDM 207

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G +D+A  VFD++  R +    WNS+I+ Y + G   +A++L   M   GV P   
Sbjct: 208 YAKCGCVDDARAVFDRIRVRDSVV--WNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIA 265

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T    + A A    +  G ++H    R GF     +  +LVDMYAK G +  AR +F+++
Sbjct: 266 TLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQL 325

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILANASLLRIGAQV 314
             ++L+S+N+M+ GY  HG   EA  +F  M +     PD +    +L+  +        
Sbjct: 326 MKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACN-------- 377

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           HG +++   E+       ++ VYS    +     L D            ++    +  EA
Sbjct: 378 HGGMVKEAKEF----FGLMVDVYSIKPTVQHFTCLVD------------VLGHAGRFEEA 421

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMV 433
               + M    + PD   + +LL+ C    +V++GE     ++E   + P    +Y  + 
Sbjct: 422 YDLIKGMP---MQPDSGIWGALLNGCKIHKNVELGELALQKLIE---LEPEDAGNYVLLS 475

Query: 434 NLYGRAGLIDEA 445
           N+Y ++G  ++A
Sbjct: 476 NIYAQSGKWEKA 487


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 270/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C + KA + G ++H  +       +  + + L+ +Y   G +++A
Sbjct: 86  GLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDA 145

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD+  +R   ++                              WN++ISGYAE G Y+
Sbjct: 146 HKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYK 205

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+  M +  V PD+ T   V+ ACA  G I +G +VH      GFG +  ++NAL+
Sbjct: 206 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALI 265

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++  A  +F+ +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 266 DLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 325

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  +F+
Sbjct: 326 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFN 385

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +  K + SWN++I     H +   +   F +M ++G+ PD +TFV LLSAC+H G + +
Sbjct: 386 SILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 445

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M + Y ++P++EHY CM++L G +GL  EA  MI   ME E   V+W +LL A
Sbjct: 446 GRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKA 504

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE+ AQ L ++EP+N  ++ LL  IY  AGR ++V     +L D+G++
Sbjct: 505 CKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMK 561



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 222/444 (50%), Gaps = 59/444 (13%)

Query: 115 RLIPTNLLRKNKGISSKLLR---LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++I T L   N  +S KL+    L   F  +  A  VF+ +         WN++  G+A 
Sbjct: 12  QMIKTGLHNTNYALS-KLIEFCILSPHFDGLPYAISVFETIQEPNLLI--WNTMFRGHAL 68

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             +   A+ LY  M   G+ P+ +TFP +LK+CA     + G+++H   ++ G   D +V
Sbjct: 69  SSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 128

Query: 232 LNALVDMYAKCG---------------DIV----------------KARTVFDRIGNKDL 260
             +L+ MY + G               D+V                 A+ +FD I  KD+
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV 188

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGW 317
           +S+N+M++GY   G   EA ++F+ M+     PD    V + S  A +  + +G QVH W
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSW 248

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EA 374
           +   G   +L I N+LI +YSK G+L+ AC LF+ +P KDV+SWN++I  ++  +   EA
Sbjct: 249 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEA 308

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GISPRVEHYACM 432
           L+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V ++K   G++        +
Sbjct: 309 LLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKRLKGVANASSLRTSL 367

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE----- 487
           +++Y + G I+ A+ +    +    S   W A+++   +HG       A+  +F      
Sbjct: 368 IDMYAKCGDIEAAHQVFNSILHKSLSS--WNAMIFGFAMHGRA----DASFDIFSRMRKN 421

Query: 488 -LEPDNEHNFELLIKIYGNAGRLD 510
            +EPD+   F  L+    ++G LD
Sbjct: 422 GIEPDDI-TFVGLLSACSHSGMLD 444



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 173/364 (47%), Gaps = 33/364 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  +     T  +++  C Q  ++E G ++H  I  +    N  I + L+ LY+  G +
Sbjct: 215 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGEL 274

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F+ +  +   +  WN+LI GY  +  Y++A+ L+ +M   G  P+  T   +L 
Sbjct: 275 ETACGLFEGLPYKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 332

Query: 203 ACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           ACA LG I +G  +H  +D    G      +  +L+DMYAKCGDI  A  VF+ I +K L
Sbjct: 333 ACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 392

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+N+M+ G+  HG    +FDIF  M  NG +PD +    +L+  S        H  +L 
Sbjct: 393 SSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACS--------HSGMLD 444

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380
            G      I  S+   Y    KL+    + D +    +           K+ E +I   +
Sbjct: 445 LGRH----IFRSMTQDYKMTPKLEHYGCMIDLLGHSGLF----------KEAEEMINTME 490

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ME DGV+     + SLL AC   G+V++GE     +++    +P    Y  + N+Y  AG
Sbjct: 491 MEPDGVI-----WCSLLKACKMHGNVELGESFAQNLIKIEPENPG--SYVLLSNIYATAG 543

Query: 441 LIDE 444
             +E
Sbjct: 544 RWNE 547


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 265/448 (59%), Gaps = 9/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++G  V   T+ +L+  C  LK++    +L   +  N    ++ + +++L ++   G++
Sbjct: 124 LEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMM 183

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A ++FD+M  R A +  W ++ISGY + G Y +A  L+  M EE  +    TF  +++
Sbjct: 184 IDACRLFDEMPARNAVS--WGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIR 241

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A AGL +I  G ++H  A++ G G D FV  AL+DMY+KCG +  A  VFD + +K ++ 
Sbjct: 242 ASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVG 301

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA---QVHGWVL 319
           +NS++ GY  HG   EA D++  M  +G   D    S I+   S L   A   QVH  ++
Sbjct: 302 WNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLV 361

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R G   D+    +L+  YSK GK+D A  +FD M  ++++SWN++I     H    EA+ 
Sbjct: 362 RNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAID 421

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+M R+G++P+H+TF+++LSAC+  G  + G  +F  M   + + PR  H+ACM+ L 
Sbjct: 422 MFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELL 481

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR GL+DEAY++I  K  F+ +  +W ALL AC +HGN+ +G+ AA+KL+ +EP+   N+
Sbjct: 482 GREGLLDEAYALI-RKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNY 540

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L+ IY ++G+L +   V + L  +GL
Sbjct: 541 IVLLNIYNSSGKLKEAADVFQTLKRKGL 568


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 178/491 (36%), Positives = 281/491 (57%), Gaps = 31/491 (6%)

Query: 62   KAFPKTKLQALDSIIQDLE------------SSVQN-GITVQTETFASLLETCYQLKAVE 108
            K   K+ + + +S+I DL             SS++  G+     +F   +++C  L  + 
Sbjct: 1100 KYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLV 1159

Query: 109  HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
             G   H+         +  +SS L+ +Y+  G + +A  +FD++  R   +  W S+I+G
Sbjct: 1160 SGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVS--WTSMITG 1217

Query: 169  YAELGEYEDAIALY--FQMEEEGVEP------DQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            Y +  + ++A+ L+  F  EE  VE       D      VL AC+ +    + E VH   
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 221  VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
            V+ GF     V N L+D YAKCG  + ++ VFD +  KD IS+NSM+  Y   GL  EA 
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 1337

Query: 281  DIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            ++F GM+ + G   + V +S++L   A+A  LR G  +H  V++  +E+++C+  S+I +
Sbjct: 1338 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 1397

Query: 337  YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
            Y K G+++ A   FD M +K+V SW +++     H +  EAL  F +M R GV P+++TF
Sbjct: 1398 YCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITF 1457

Query: 394  VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            VS+L+AC+H G V+ G   F+ M  KY I P +EHY CMV+L+GRAG ++EAY++I ++M
Sbjct: 1458 VSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI-KRM 1516

Query: 454  EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            + +   VVWG+LL AC +H NV +GE AAQKLFEL+PDN   + LL  +Y +AGR  DVE
Sbjct: 1517 KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVE 1576

Query: 514  RVERMLVDRGL 524
            R+  ++ +R L
Sbjct: 1577 RMRMLMKNRQL 1587



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/402 (32%), Positives = 207/402 (51%), Gaps = 42/402 (10%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL+ C   K   H  ++H  I  + L  ++ ++ KL+ LY+T G I  A  +F Q+ N  
Sbjct: 33  LLQNCKNFK---HLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
            F   WN +I      G  E A+ LY  M  +G+  D+FTFP V+KAC     I +G+ V
Sbjct: 90  TFT--WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVV 147

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAK-------------------------------CGDI 245
           H   +++GF  D FV N L+D Y K                               CGD+
Sbjct: 148 HGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
            +AR +FD I +K+++S+ +M+ GYI +    EA ++F+ M      P+   + S++   
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 306 S---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +   +L +G  +H + ++  +E  + +  +LI +YSK G +  A  +F+ MP+K + +WN
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           S+I +   H    EAL  F +MER  V PD +TF+ +L AC H+ +VK G   F+ M + 
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           YGI+P  EHY CM  LY R+  +DEA+    E      SP +
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 346  ACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAH 402
            A W + ++ + +V SWNS+I   A   D  EAL  F  + + G++P   +F   + +C+ 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 403  LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            L  +  G R+       +G    +   + ++++Y + G + +A ++  E
Sbjct: 1155 LCDLVSG-RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDE 1202


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 264/478 (55%), Gaps = 36/478 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+   + TF  LL++C +L +   G ++H  +       +  I + L+ +YA  G +
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
           + A  VFDQ + R A +F                              WN++I+GYA++G
Sbjct: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
             ++A+ L+  M +  V P++ T   VL ACA    + +G  +       G   +  ++N
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           AL+DMY+KCGD+  AR +FD +  +D+IS+N M+ GY H     EA  +FR M+ +G +P
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 294 DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
             +   SIL   A+   + +G  +H ++ +        ++ SLI +Y+K G +  A  +F
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 351 DHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           D M  K + SWN++I     H +  +A   F +M  DG+ P+ +TFV +LSAC H G V 
Sbjct: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
           +G++ FS MV+ Y ISP+ +HY CM++L GRAGL +EA S++ + ME +    +WG+LL 
Sbjct: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLL-QNMEVKPDGAIWGSLLG 539

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AC  HG V +GE  A++LFELEPDN   + LL  IY  AG+ DDV R+   L DRG++
Sbjct: 540 ACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMK 597



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 222/471 (47%), Gaps = 64/471 (13%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF--GLIDEA 145
            +Q      LL  C  ++  +   ++H  I    L       SKL+   A    G I  A
Sbjct: 26  VLQEHPSLKLLSKCQSIRTFK---QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYA 82

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F+ +     F   WNS+I G +       A+  + +M   GVEP+ +TFP +LK+CA
Sbjct: 83  ISLFNSIEEPNLFI--WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCA 140

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV------------------- 246
            L     G+++H   ++ GF  D F+  +L++MYA+ G++                    
Sbjct: 141 KLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTA 200

Query: 247 ------------KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
                       +AR +FD +  KD++S+N+M+ GY   G   EA  +F  M      P+
Sbjct: 201 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPN 260

Query: 295 PVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
              I S+L   A ++ L +G  +  W+  RG+  +L + N+LI +YSK G L  A  LFD
Sbjct: 261 ESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFD 320

Query: 352 HMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M ++DV+SWN +I  ++      EAL  F +M   GV P  +TF+S+L +CAHLG++ +
Sbjct: 321 DMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDL 380

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G+ + + + + +         + +++LY + G I  A   + + M+ + S   W A++  
Sbjct: 381 GKWIHAYINKNFNSVSTSLSTS-LIDLYAKCGNI-VAARQVFDGMKIK-SLASWNAMICG 437

Query: 469 CYLHGNVCMGETAAQKLFEL---------EPDNEHNFELLIKIYGNAGRLD 510
             +HG        A K FEL         EP NE  F  ++    +AG +D
Sbjct: 438 LAMHGQ-------ADKAFELFSKMSSDGIEP-NEITFVGILSACKHAGLVD 480


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 259/447 (57%), Gaps = 11/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+  L   C  L AVE+G   H  +    L ++  +S  L+ +YA  G + +A
Sbjct: 122 GLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDA 181

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD++S +   +  WNS+ISGY+++    +A+ L+ +M E G +P++ +   VL AC 
Sbjct: 182 RKVFDEISQKDLVS--WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACG 239

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG +++G  V    V      + F+ +AL+ MY KCGD+V AR +FD +  KD +++N+
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+TGY  +G+  EA  +F+ M ++   PD + +  IL   A+   L +G QV  +   RG
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
            + D+ +  +L+ +Y+K G LD A  +F  MP+K+ VSWN++I A   H +  EAL  F+
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFK 419

Query: 380 QMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
            M  +G  V P+ +TFV +LSAC H G V  G RLF +M   +G+ P++EHY+CMV+L+ 
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFS 479

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG ++EA+  ++  M  +   V+ GALL AC    N+ + E   + L ELEP N  N+ 
Sbjct: 480 RAGHLEEAWDFVM-TMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYV 538

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  K+Y N  R DD  R+  ++  +G+
Sbjct: 539 ISSKLYANLRRWDDSARMRMLMKQKGV 565



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 204/392 (52%), Gaps = 23/392 (5%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ--V 148
           ++ F SLL+ C  +K ++   ++H  + TN + K          LY    L D A+    
Sbjct: 32  SDKFNSLLQQCLSIKQLK---QIHAQLLTNSIHKPNSF------LYKIADLKDFAYASVF 82

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYED-AIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           F  + + T ++F  N +I G +        A+  Y +M+  G++P+  T+P +  AC+ L
Sbjct: 83  FSNILDPTEYSF--NVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNL 140

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
             +  G   H   +R G   DG V ++L+ MYA+CG +  AR VFD I  KDL+S+NSM+
Sbjct: 141 LAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMI 200

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVE 324
           +GY       EA  +FR M+  GF P+ +++ S+L        L++G  V  +V+   + 
Sbjct: 201 SGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMT 260

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
            +  + ++LI +Y K G L  A  +FD M +KD V+WN++I  ++++    EA+  F+ M
Sbjct: 261 LNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM 320

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
                 PD +T + +LSACA +G++ +G+++  +   + G    V     +V++Y + G 
Sbjct: 321 RMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERGFQDDVYVGTALVDMYAKCGS 379

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +D A+ +       + + V W A++ A   HG
Sbjct: 380 LDNAFRVFYGMP--KKNEVSWNAMISALAFHG 409


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 266/449 (59%), Gaps = 9/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q G+     T+ ++L  C  L A+E G ++H  I  +    +  +S+ L ++Y   G +
Sbjct: 238 LQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAV 297

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A +VF+ + NR   A  WN++I G  + G+ E+A  ++ +M +E V PD+ T+  +L 
Sbjct: 298 KDAREVFECLPNRDVIA--WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILS 355

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA  G +  G+++H  AV+ G   D    NAL++MY+K G +  AR VFDR+  +D++S
Sbjct: 356 ACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVS 415

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + +++ GY   G +VE+F  F+ M+  G + + +    +L   +N   L+ G ++H  V+
Sbjct: 416 WTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVV 475

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALI 376
           + G+  DL +AN+L+ +Y K G ++ A  + + M  +DVV+WN++I   +++    EAL 
Sbjct: 476 KAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQ 535

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M+ + + P+  TFV+++SAC     V+ G R F+ M + YGI P  +HYACMV++ 
Sbjct: 536 KFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDIL 595

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            RAG + EA  +I+  M F+ S  +WGALL AC  HGNV +GE AA++  +LEP N   +
Sbjct: 596 ARAGHLGEAEDVIL-TMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTY 654

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L  IY  AG   DV ++ +++ +RG++
Sbjct: 655 VSLSFIYAAAGMWRDVAKLRKLMKERGVK 683



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 228/430 (53%), Gaps = 21/430 (4%)

Query: 43  ITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCY 102
           I+ +S   KSS  P  T+    P   LQ L           Q G  V +  +  LL++C 
Sbjct: 6   ISRWSRVDKSSMIPTSTDGWYAPADVLQYLH----------QKGSQVDSYDYVKLLQSCV 55

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           + K +  G ++H  I    ++ N  I + LL+LY   G ++EA ++FD+ SN++  +  W
Sbjct: 56  KAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVS--W 113

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N +ISGYA  G  ++A  L+  M++EG+EPD+FTF  +L AC+    +  G +VH+  + 
Sbjct: 114 NVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVME 173

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   +  V NAL+ MYAKCG +  AR VFD + ++D +S+ ++   Y   G   E+   
Sbjct: 174 AGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKT 233

Query: 283 FRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           +  M+  G  P  +   ++L+   + + L  G Q+H  ++      D+ ++ +L  +Y K
Sbjct: 234 YHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIK 293

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G +  A  +F+ +P +DV++WN++I       +  EA   F +M ++ V PD +T++++
Sbjct: 294 CGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAI 353

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           LSACA  G +  G+ + +  V K G+   V     ++N+Y +AG + +A   + ++M  +
Sbjct: 354 LSACARPGGLACGKEIHARAV-KDGLVSDVRFGNALINMYSKAGSMKDA-RQVFDRMP-K 410

Query: 457 ASPVVWGALL 466
              V W AL+
Sbjct: 411 RDVVSWTALV 420


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/491 (36%), Positives = 281/491 (57%), Gaps = 31/491 (6%)

Query: 62   KAFPKTKLQALDSIIQDLE------------SSVQN-GITVQTETFASLLETCYQLKAVE 108
            K   K+ + + +S+I DL             SS++  G+     +F   +++C  L  + 
Sbjct: 1973 KYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLV 2032

Query: 109  HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
             G   H+         +  +SS L+ +Y+  G + +A  +FD++  R   +  W S+I+G
Sbjct: 2033 SGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVS--WTSMITG 2090

Query: 169  YAELGEYEDAIALY--FQMEEEGVEP------DQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            Y +  + ++A+ L+  F  EE  VE       D      VL AC+ +    + E VH   
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 2150

Query: 221  VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
            V+ GF     V N L+D YAKCG  + ++ VFD +  KD IS+NSM+  Y   GL  EA 
Sbjct: 2151 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 2210

Query: 281  DIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            ++F GM+ + G   + V +S++L   A+A  LR G  +H  V++  +E+++C+  S+I +
Sbjct: 2211 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 2270

Query: 337  YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
            Y K G+++ A   FD M +K+V SW +++     H +  EAL  F +M R GV P+++TF
Sbjct: 2271 YCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITF 2330

Query: 394  VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            VS+L+AC+H G V+ G   F+ M  KY I P +EHY CMV+L+GRAG ++EAY++I ++M
Sbjct: 2331 VSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI-KRM 2389

Query: 454  EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            + +   VVWG+LL AC +H NV +GE AAQKLFEL+PDN   + LL  +Y +AGR  DVE
Sbjct: 2390 KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVE 2449

Query: 514  RVERMLVDRGL 524
            R+  ++ +R L
Sbjct: 2450 RMRMLMKNRQL 2460



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 211/418 (50%), Gaps = 52/418 (12%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL+ C   K   H  ++H  I  + L  ++ ++ KL+ LY+T G I  A  +F Q+ N  
Sbjct: 33  LLQNCKNFK---HLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
            F   WN +I      G  E A+ LY  M  +G+  D+FTFP V+KAC     I +G+ V
Sbjct: 90  TFT--WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVV 147

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAK-------------------------------CGDI 245
           H   +++GF  D FV N L+D Y K                               CGD+
Sbjct: 148 HGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
            +AR +FD I +K+++S+ +M+ GYI +    EA ++F+ M      P+   + S++   
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 306 S---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +   +L +G  +H + ++  +E  + +  +LI +YSK G +  A  +F+ MP+K + +WN
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           S+I +   H    EAL  F +MER  V PD +TF+ +L AC H+ +VK G   F+ M + 
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----------VVWGALLY 467
           YGI+P  EHY CM  LY R+  +DEA+    E      SP          V W  LL+
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLLF 445



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 346  ACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAH 402
            A W + ++ + +V SWNS+I   A   D  EAL  F  + + G++P   +F   + +C+ 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 403  LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            L  +  G R+       +G    +   + ++++Y + G + +A ++  E
Sbjct: 2028 LCDLVSG-RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDE 2075


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 258/447 (57%), Gaps = 11/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+  L   C  L AVE+G   H  +    L ++  +S  L+ +YA  G + +A
Sbjct: 122 GLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDA 181

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD++S +   +  WNS+ISGY+++    +A+ L+ +M E G +P++ +   VL AC 
Sbjct: 182 RKVFDEISQKDLVS--WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACG 239

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG +++G  V    V      + F+ +AL+ MY KCGD+V AR +FD +  KD +++N+
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+TGY  +G+  EA  +F+ M ++   PD + +  IL   A+   L +G QV  +   RG
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
            + D+ +  +L+ +Y+K G LD A  +F  MP K+ VSWN++I A   H +  EAL  F+
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFK 419

Query: 380 QMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
            M  +G  V P+ +TFV +LSAC H G V  G RLF +M   +G+ P++EHY+CMV+L+ 
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFS 479

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG ++EA+  ++  M  +   V+ GALL AC    N+ + E   + L ELEP N  N+ 
Sbjct: 480 RAGHLEEAWDFVM-TMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYV 538

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  K+Y N  R DD  R+  ++  +G+
Sbjct: 539 ISSKLYANLRRWDDSARMRMLMKQKGV 565



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 204/396 (51%), Gaps = 31/396 (7%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ--V 148
           ++ F SLL+ C  +K ++   ++H  + TN + K          LY    L D A+    
Sbjct: 32  SDKFNSLLQQCLSIKQLK---QIHAQLLTNSIHKPNSF------LYKIADLKDFAYASVF 82

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYED-AIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           F  + + T ++F  N +I G +        A+  Y +M+  G++P+  T+P +  AC+ L
Sbjct: 83  FSNILDPTEYSF--NVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNL 140

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
             +  G   H   +R G   DG V ++L+ MYA+CG +  AR VFD I  KDL+S+NSM+
Sbjct: 141 LAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMI 200

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVE 324
           +GY       EA  +FR M+  GF P+ +++ S+L        L++G  V  +V+   + 
Sbjct: 201 SGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMT 260

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
            +  + ++LI +Y K G L  A  +FD M +KD V+WN++I  ++++    EA+  F+ M
Sbjct: 261 LNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM 320

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
                 PD +T + +LSACA +G++ +G+++  +   + G    V     +V++Y + G 
Sbjct: 321 RMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERGFQDDVYVGTALVDMYAKCGS 379

Query: 442 IDEAYSMIVEKMEFEASP----VVWGALLYACYLHG 473
           +D A+ +      F   P    V W A++ A   HG
Sbjct: 380 LDNAFRV------FYGMPNKNEVSWNAMISALAFHG 409


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 268/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C +LKA + G+++H  +       +  + + L+ +Y     +++A
Sbjct: 58  GLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDA 117

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD+ S+R   ++                              WN++ISGY E G Y+
Sbjct: 118 HKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYK 177

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V PD+ T   V+ A A  G I +G +VH      GFG +  ++NAL+
Sbjct: 178 EALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALI 237

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D Y+KCG++  A  +F  +  KD+IS+N ++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 238 DFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDV 297

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV     +  SLI +YSK G ++ A  +F+
Sbjct: 298 TMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFN 357

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  K + +WN++I     H + + A   F +M ++ + PD +TFV LLSAC+H G + +
Sbjct: 358 SMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDL 417

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M   Y I+P++EHY CM++L G +GL  EA  MI   M  E   V+W +LL A
Sbjct: 418 GRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-STMTMEPDGVIWCSLLKA 476

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE  AQ LF++EP+N  ++ LL  IY  AGR ++V R+  +L D+G++
Sbjct: 477 CKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMK 533



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 201/390 (51%), Gaps = 45/390 (11%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN++  G+A   +   A+ LY  M   G+ P+ +TFP +LK+CA L   + G ++H   +
Sbjct: 31  WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVL 90

Query: 222 RFGFGFDGFVLNALVDM-------------------------------YAKCGDIVKART 250
           + G+  D +V  +L+ M                               YA  G I  AR 
Sbjct: 91  KLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARN 150

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASL 307
           +FD I  KD++S+N+M++GY+  G   EA ++F+ M+     PD    V + S  A +  
Sbjct: 151 MFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGS 210

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           + +G QVH W+   G   +L I N+LI  YSK G+++ AC LF  +  KDV+SWN +I  
Sbjct: 211 IELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGG 270

Query: 368 HSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GI 422
           ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V ++K   G+
Sbjct: 271 YTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIG-RWIHVYIDKRLKGV 329

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG--NVCMGET 480
           +        ++++Y + G I+ A+  +   M  ++ P  W A+++   +HG  N      
Sbjct: 330 TNASSLRTSLIDMYSKCGDIEAAHQ-VFNSMLHKSLP-AWNAMIFGFAMHGRANAAFDIF 387

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           +  +  E++PD+   F  L+    +AG LD
Sbjct: 388 SRMRKNEIKPDDI-TFVGLLSACSHAGMLD 416



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 38/235 (16%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A +VF+ I   +L+ +N+M  G+      V A  ++  MI  G  P+      +L + + 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 308 LRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKD------------------------ 340
           L+    G Q+HG VL+ G E DL +  SLI +Y ++                        
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 341 -------GKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
                  G ++ A  +FD +P KDVVSWN++I  + +     EAL  F++M +  V PD 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            T V+++SA A  GS+++G ++ S + + +G    ++    +++ Y + G ++ A
Sbjct: 196 STMVTVISASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETA 249



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 4/136 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL--LRKNKGISSKLLRLYATFG 140
           +++G +    T  S+L  C  L A++ G  +H  I   L  +     + + L+ +Y+  G
Sbjct: 288 LRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCG 347

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            I+ AHQVF+ M +++  A  WN++I G+A  G    A  ++ +M +  ++PD  TF  +
Sbjct: 348 DIEAAHQVFNSMLHKSLPA--WNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGL 405

Query: 201 LKACAGLGLIRVGEKV 216
           L AC+  G++ +G  +
Sbjct: 406 LSACSHAGMLDLGRHI 421


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 266/445 (59%), Gaps = 15/445 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  L+ +C +  ++  GI LHR +  +   ++  +++KL+ +Y+    ID A +VFD+ 
Sbjct: 80  TYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKT 139

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC----AGLG 208
             RT +   WN+L       G   + + LY +M   GV  D+FT+  VLKAC    A + 
Sbjct: 140 RKRTIYV--WNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVS 197

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           L+  G ++H   +R GF     ++  L+DMYA+ G ++ A  VFD++  K+++S+++M+ 
Sbjct: 198 LLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIA 257

Query: 269 GYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSILANASLLRI---GAQVHGWVLRRGV 323
            Y  +G  +EA ++FR M+L   D  P+ V + S+L   + L     G  +HG++LRRG+
Sbjct: 258 CYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGL 317

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           +  L + ++L+ VY++ G L+    +F+ M ++DVVSWNS+I +   H    +A+  F++
Sbjct: 318 DSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKE 377

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M   G+ P  ++FVS+L AC+H G V+ G+ LF  MV  + I P VEHYACMV+L GRA 
Sbjct: 378 MIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRAN 437

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            +DEA + I++ M  E  P VWG+LL +C +H NV + E A  +LFELEP N  N+ LL 
Sbjct: 438 RLDEA-AKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLA 496

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            IY  A   ++V+RV+ +L  RGL+
Sbjct: 497 DIYAEAKMWNEVKRVKMLLEARGLQ 521



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 182/405 (44%), Gaps = 62/405 (15%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N LI    + G    A+    Q+  +   P Q T+  ++ +C     +  G  +H   + 
Sbjct: 51  NPLIQSLCKQGNLNQAL----QVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   D F+   L++MY++   I  AR VFD+   + +  +N++       G   E  D+
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDL 166

Query: 283 FRGMILNGFDPDPVAISSIL-------ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           +R M   G   D    + +L       A  SLL  G ++HG +LR G E  + I  +L+ 
Sbjct: 167 YRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLD 226

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQM--ERDGVLPDH 390
           +Y++ G +  A  +FD MP K+VVSW+++I  +SK+    EAL  F +M  E   +LP+ 
Sbjct: 227 MYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNS 286

Query: 391 LTFVS-----------------------------------LLSACAHLGSVKVGERLFSV 415
           +T VS                                   L++  A  G++++G R+F  
Sbjct: 287 VTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFER 346

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME--FEASPVVWGALLYACYLHG 473
           M ++  +S     +  +++ YG  G   +A  +  E ++     SP+ + ++L AC   G
Sbjct: 347 MEKRDVVS-----WNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAG 401

Query: 474 NVCMGETAAQKLF---ELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            V  G+   + +    ++ P  EH +  ++ + G A RLD+  ++
Sbjct: 402 LVEEGKVLFESMVRGHKIFPSVEH-YACMVDLLGRANRLDEAAKI 445



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 156/297 (52%), Gaps = 25/297 (8%)

Query: 86  GITVQTETFASLLETCYQLKA----VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           G+     T+  +L+ C   +A    + +G ++H  I  +    +  I + LL +YA FG 
Sbjct: 174 GVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGC 233

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPR 199
           +  A +VFDQM  +   +  W+++I+ Y++ G+  +A+ L+ +M  E + + P+  T   
Sbjct: 234 VLNASRVFDQMPVKNVVS--WSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVS 291

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL+ACA L  +  G+ +H   +R G      V++ALV +YA+CG++     VF+R+  +D
Sbjct: 292 VLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRD 351

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG----- 311
           ++S+NS+++ Y  HG   +A  IF+ MI  G  P P++  S+L   ++A L+  G     
Sbjct: 352 VVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFE 411

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM---PQKDVVSWNSII 365
           + V G  +   VE   C+ + L     +  +LD+A  + D M   P   V  W S++
Sbjct: 412 SMVRGHKIFPSVEHYACMVDLL----GRANRLDEAAKIIDDMRIEPGPKV--WGSLL 462


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/500 (34%), Positives = 269/500 (53%), Gaps = 49/500 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           + L+   +  E  +Q GI+    TF SLL +C   +A+  G ++H  I    L  +  ++
Sbjct: 237 RKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVA 296

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED--AIALYFQ--- 184
           + L+ +Y     + EA ++FD+MS R   +  W+++I+GYA+ G Y+D  +I   FQ   
Sbjct: 297 NALITMYCKCNSVQEAREIFDRMSKRDVIS--WSAMIAGYAQSG-YKDKESIDEVFQLLE 353

Query: 185 -MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M  EGV P++ TF  +L+AC   G +  G ++H +  + GF  D  +  A+ +MYAKCG
Sbjct: 354 RMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCG 413

Query: 244 DIVKARTVFDRIGNKDLI-------------------------------SYNSMLTGYIH 272
            I +A  VF ++ NK+++                               S+N M+ GY  
Sbjct: 414 SIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQ 473

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRRGVEWDLC 328
           +G +V+ F++   M   GF PD V + +IL    A A L R G  VH   ++ G+E D  
Sbjct: 474 NGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER-GKLVHAEAVKLGLESDTV 532

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +A SLI +YSK G++ +A  +FD M  +D V+WN+++     H    EA+  F++M ++ 
Sbjct: 533 VATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKER 592

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P+ +T  +++SAC+  G V+ G  +F +M E + ++PR +HY CMV+L GRAG + EA
Sbjct: 593 VSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEA 652

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I + M  E    VW ALL AC  H NV + E AA  + ELEP     +  L  IY  
Sbjct: 653 EEFI-QSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQ 711

Query: 506 AGRLDDVERVERMLVDRGLE 525
           AGR DD  +V R++ DRGL+
Sbjct: 712 AGRWDDSTKVRRVMDDRGLK 731



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 242/475 (50%), Gaps = 22/475 (4%)

Query: 46  FSSYPKSSPTPL-LTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           F+S  K    P  ++  + +   K   L   IQ L    Q G+ V + T+  ++E C + 
Sbjct: 10  FASTGKELDGPTSVSGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKA 69

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
           +  E G  +H+ +    +  +  + + L+  Y+ F  +  A QVF +M+ R      W+S
Sbjct: 70  RRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVT--WSS 127

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I+ YA       A   + +M +  +EP++ TF  +LKAC    ++  G K+H      G
Sbjct: 128 MIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMG 187

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
              D  V  AL+ MY+KCG+I  A  VF ++  ++++S+ +++     H  L EAF+++ 
Sbjct: 188 METDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYE 247

Query: 285 GMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M+  G  P+ V   S+L + +    L  G ++H  +  RG+E D+ +AN+LI +Y K  
Sbjct: 248 QMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCN 307

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHS----KDHEAL----IYFEQMERDGVLPDHLTF 393
            + +A  +FD M ++DV+SW+++I  ++    KD E++       E+M R+GV P+ +TF
Sbjct: 308 SVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTF 367

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +S+L AC   G+++ G ++ + +  K G          + N+Y + G I EA   +  KM
Sbjct: 368 MSILRACTAHGALEQGRQIHAEL-SKVGFELDRSLQTAIFNMYAKCGSIYEA-EQVFSKM 425

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLF-ELEPDNEHNFELLIKIYGNAG 507
               + V W + L + Y+    C   ++A+K+F E+   N  ++ L+I  Y   G
Sbjct: 426 A-NKNVVAWTSFL-SMYIK---CGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNG 475


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 264/445 (59%), Gaps = 15/445 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  L+ +C Q  ++  G+ +HR + ++   ++  +++KL+ +Y   G ID A +VFD+ 
Sbjct: 80  TFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDET 139

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA----GLG 208
             RT +   WN+L    A +G  ++ + LY QM   G+  D+FT+  VLKAC      + 
Sbjct: 140 RERTIYV--WNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVS 197

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            ++ G+++H   +R G+  +  V+  L+D+YAK G +  A +VF  +  K+ +S+++M+ 
Sbjct: 198 PLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIA 257

Query: 269 GYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
            +  + + ++A ++F+ M+L   D  P+ V + ++L   A  + L  G  +HG++LRRG+
Sbjct: 258 CFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGL 317

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQ 380
           +  L + N+LI +Y + G++     +FD+M  +DVVSWNS+I     H    +A+  FE 
Sbjct: 318 DSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFEN 377

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M   G  P +++F+++L AC+H G V+ G+ LF  M+ KY I P +EHYACMV+L GRA 
Sbjct: 378 MIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRAN 437

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            +DEA  +I E M FE  P VWG+LL +C +H NV + E A+  LFELEP N  N+ LL 
Sbjct: 438 RLDEAIKLI-EDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLA 496

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            IY  A    + + V ++L  RGL+
Sbjct: 497 DIYAEAKMWSEAKSVMKLLEARGLQ 521



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 178/379 (46%), Gaps = 55/379 (14%)

Query: 86  GITVQTETFASLLETC----YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           GI     T+  +L+ C      +  ++ G ++H  I  +    N  + + LL +YA FG 
Sbjct: 174 GIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGS 233

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY--FQMEEEGVEPDQFTFPR 199
           +  A+ VF  M  +   +  W+++I+ +A+      A+ L+    +E     P+  T   
Sbjct: 234 VSYANSVFCAMPTKNFVS--WSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVN 291

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL+ACAGL  +  G+ +H   +R G      VLNAL+ MY +CG+I+  + VFD + N+D
Sbjct: 292 VLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRD 351

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG----- 311
           ++S+NS+++ Y  HG   +A  IF  MI  G  P  ++  ++L   ++A L+  G     
Sbjct: 352 VVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFE 411

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
           + +  + +  G+E   C+ + L     +  +LD+A  L + M                  
Sbjct: 412 SMLSKYRIHPGMEHYACMVDLL----GRANRLDEAIKLIEDM------------------ 449

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYA 430
                +FE        P    + SLL +C    +V++ ER  +++ E   + PR   +Y 
Sbjct: 450 -----HFE--------PGPTVWGSLLGSCRIHCNVELAERASTLLFE---LEPRNAGNYV 493

Query: 431 CMVNLYGRAGLIDEAYSMI 449
            + ++Y  A +  EA S++
Sbjct: 494 LLADIYAEAKMWSEAKSVM 512



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 23/337 (6%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N LI    + G  + AI L          P Q TF  ++ +CA    +  G  VH   V 
Sbjct: 51  NQLIQSLCKGGNLKQAIHLLCCEPN----PTQRTFEHLICSCAQQNSLSDGLDVHRRLVS 106

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GF  D F+   L++MY + G I +AR VFD    + +  +N++       G   E  D+
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDL 166

Query: 283 FRGMILNGFDPDPVAISSILA-------NASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           +  M   G   D    + +L        + S L+ G ++H  +LR G E ++ +  +L+ 
Sbjct: 167 YVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLD 226

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQM--ERDGVLPDH 390
           VY+K G +  A  +F  MP K+ VSW+++I   +K+    +AL  F+ M  E    +P+ 
Sbjct: 227 VYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNS 286

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T V++L ACA L +++ G+ +   ++ + G+   +     ++ +YGR G I      + 
Sbjct: 287 VTMVNVLQACAGLAALEQGKLIHGYILRR-GLDSILPVLNALITMYGRCGEILMG-QRVF 344

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           + M+     V W +L+    +HG    G+ A Q +FE
Sbjct: 345 DNMK-NRDVVSWNSLISIYGMHG---FGKKAIQ-IFE 376


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 269/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + +F  LL++C + KA+  G ++H  +       +  +++ L+ +YA  G +++A
Sbjct: 60  GLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDA 119

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD+ S+R   ++                              WN++ISGY E   ++
Sbjct: 120 HKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFK 179

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ LY  M +  V+PD+ T   V+ ACA  G I +G ++H      GFG +  ++N L+
Sbjct: 180 EALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLI 239

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++  A  +F  +  KD+IS+N+++ G+ H  L  EA  +F+ M+ +G  P+ V
Sbjct: 240 DLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDV 299

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + S+L   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  +FD
Sbjct: 300 TMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFD 359

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  + + SWN++I     H K + A   F +M ++G+ PD +TFV LLSAC+H G + +
Sbjct: 360 SMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDL 419

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M + Y I+P++EHY CM++L G  GL  EA  MI   M  E   V+W +LL A
Sbjct: 420 GRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMI-RTMPMEPDGVIWCSLLKA 478

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +H NV +GE+ AQ L ++EP+N  ++ LL  IY  AGR D V ++  +L D+G++
Sbjct: 479 CKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIK 535



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 200/394 (50%), Gaps = 53/394 (13%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN++  G+A   +   A+ LY  M   G+ P+ ++FP +LK+CA    +  G+++H   +
Sbjct: 33  WNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVL 92

Query: 222 RFGFGFDGFVLNALVDMYAKCGD-------------------------------IVKART 250
           + G+  D +V  +L+ MYA+ G                                I  AR 
Sbjct: 93  KLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARK 152

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASL 307
           +FD I  KD++S+N+M++GY+      EA ++++ M+     PD    V + S  A +  
Sbjct: 153 LFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGS 212

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           + +G Q+H W+   G   ++ I N LI +YSK G+++ AC LF  + +KDV+SWN++I  
Sbjct: 213 IELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGG 272

Query: 368 HSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GI 422
           H+  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V + K   G+
Sbjct: 273 HTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG-RWIHVYINKRLKGV 331

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +        ++++Y + G I EA   + + M    S   W A+++   +HG       AA
Sbjct: 332 TNASSLLTSLIDMYAKCGDI-EAAKQVFDSM-LTRSLSSWNAMIFGFAMHGKA----NAA 385

Query: 483 QKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
             LF       ++PD+   F  L+    ++G LD
Sbjct: 386 FDLFSKMRKNGIDPDDI-TFVGLLSACSHSGMLD 418



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 172/364 (47%), Gaps = 33/364 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  +     T  +++  C Q  ++E G +LH  I  +    N  I + L+ LY+  G +
Sbjct: 189 MKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEV 248

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F  ++ +   +  WN+LI G+  +  Y++A+ L+ +M   G  P+  T   VL 
Sbjct: 249 ETACGLFQGLAKKDVIS--WNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306

Query: 203 ACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           ACA LG I +G  +H  ++    G      +L +L+DMYAKCGDI  A+ VFD +  + L
Sbjct: 307 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSL 366

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+N+M+ G+  HG    AFD+F  M  NG DPD +    +L+  S        H  +L 
Sbjct: 367 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS--------HSGMLD 418

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380
            G      I  S+   Y    KL+    + D +    +           K+ + +I    
Sbjct: 419 LGRH----IFRSMSQDYKITPKLEHYGCMIDLLGHCGLF----------KEAKEMIRTMP 464

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ME DGV+     + SLL AC    +V++GE     +++    +P    Y  + N+Y  AG
Sbjct: 465 MEPDGVI-----WCSLLKACKMHNNVELGESYAQNLIKIEPENP--GSYVLLSNIYATAG 517

Query: 441 LIDE 444
             D+
Sbjct: 518 RWDQ 521



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 38/235 (16%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A ++F+ I   +L+ +N+M  G+  +   V A  ++  MI  G  P+  +   +L   A 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL--------------------- 343
           +  L  G Q+HG VL+ G + D+ +  SLI +Y+++G+L                     
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 344 ----------DQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
                     + A  LFD +  KDVVSWN++I  + +     EAL  ++ M +  V PD 
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            T V+++SACA  GS+++G +L S  +E +G    ++    +++LY + G ++ A
Sbjct: 198 STMVTVVSACAQSGSIELGRQLHS-WIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 167/442 (37%), Positives = 258/442 (58%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK--LLRLYATFGLIDEAHQVFD 150
           TFA +L  C     +  G +LH L+ ++ L  +  +++   L+ +Y     ++ A ++FD
Sbjct: 250 TFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFD 309

Query: 151 QMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           Q   RT        ++ISGY   G   +A+ ++  + +E +  +  T   VL ACAGL  
Sbjct: 310 Q---RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAA 366

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           + +G+++H   ++ G G   +V +A++DMYAKCG +  A   F  I +KD + +NSM+T 
Sbjct: 367 LTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITS 426

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
              +G   EA D+FR M + G   D V+IS+ L   AN   L  G ++H +++R     D
Sbjct: 427 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSD 486

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           L   ++LI +YSK G LD AC +FD M +K+ VSWNSII A   H +  ++L  F  M  
Sbjct: 487 LFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLG 546

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           DG+ PDH+TF++++SAC H G V  G   F  M E+ GI  R+EHYACMV+L+GRAG ++
Sbjct: 547 DGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLN 606

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA+ MI   M F     VWG LL AC LHGNV + E A++ LF+L+P N   + LL  ++
Sbjct: 607 EAFGMI-NSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVH 665

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
            NAG+ + V ++  ++ +RG++
Sbjct: 666 ANAGQWESVLKIRSLMKERGVQ 687



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 222/410 (54%), Gaps = 18/410 (4%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           +I + L+ S+ N  ++  +   S+L+TC     +  G + H  +  N +  N  + +KLL
Sbjct: 30  NIGKPLQFSIHNDDSLAPQ-LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLL 88

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            +Y   G   +A  +F Q+  R   + PWN +I G+  +G+++ A+  YF+M   G  PD
Sbjct: 89  GMYVLCGAFLDAKNIFYQL--RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPD 146

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           ++TFP V+KAC GL  + +G  VH D ++F GF  D FV ++L+  Y++ G I  AR +F
Sbjct: 147 KYTFPYVIKACGGLNSVALGRVVH-DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLF 205

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
           DR+ +KD + +N ML GY+ +G    A  +F  M     +P+ V  + +L   A+  ++ 
Sbjct: 206 DRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMIN 265

Query: 310 IGAQVHGWVLRRGVEWDLCIANS--LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
            G+Q+HG V+  G+E D  +AN+  LI +Y K   ++ A  +FD     D+V   ++I  
Sbjct: 266 FGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISG 325

Query: 368 H---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGIS 423
           +     ++ AL  F  + ++ +  + +T  S+L ACA L ++ +G+ L   ++   +G S
Sbjct: 326 YVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGS 385

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             V   + ++++Y + G +D A+   +   + +A  V W +++ +C  +G
Sbjct: 386 CYVG--SAIMDMYAKCGRLDLAHQTFIGISDKDA--VCWNSMITSCSQNG 431



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 154/298 (51%), Gaps = 23/298 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q  +   + T AS+L  C  L A+  G +LH  I  N    +  + S ++ +YA  G +
Sbjct: 343 LQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRL 402

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D AHQ F  +S++ A    WNS+I+  ++ G+ E+AI L+ QM   G + D  +    L 
Sbjct: 403 DLAHQTFIGISDKDAVC--WNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALS 460

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  +  G+++H   +R  F  D F  +AL+DMY+KCG++  A  VFD +  K+ +S
Sbjct: 461 ACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVS 520

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           +NS++  Y +HG L ++ ++F GM+ +G  PD V   +I        I A  H   +  G
Sbjct: 521 WNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAI--------ISACGHAGQVDEG 572

Query: 323 VEWDLCIANSL------------IVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           + +  C+   L            + ++ + G+L++A  + + MP   D   W +++ A
Sbjct: 573 IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGA 630


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 267/482 (55%), Gaps = 40/482 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+   + TF SL ++C + KA     +LH       L  +  + + L+ +Y+  G +
Sbjct: 119 LHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGEL 178

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
             A  VFD+ + R A +F                              WN++I+GY + G
Sbjct: 179 RHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSG 238

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            +E+A+A + +M+E  V P+Q T   VL AC  L  + +G+ +       GFG +  ++N
Sbjct: 239 RFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVN 298

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           ALVDMY+KCG+I  AR +FD + +KD+I +N+M+ GY H  L  EA  +F  M+     P
Sbjct: 299 ALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTP 358

Query: 294 DPVAISSIL-ANASL--LRIGAQVHGWVLRR----GVEWDLCIANSLIVVYSKDGKLDQA 346
           + V   ++L A ASL  L +G  VH ++ +     G   ++ +  S+IV+Y+K G ++ A
Sbjct: 359 NDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVA 418

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  M  + + SWN++I   + +     AL  FE+M  +G  PD +TFV +LSAC   
Sbjct: 419 EQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQA 478

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V++G R FS M + YGISP+++HY CM++L  R+G  DEA  +++  ME E    +WG
Sbjct: 479 GFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEA-KVLMGNMEMEPDGAIWG 537

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           +LL AC +HG V  GE  A++LFELEP+N   + LL  IY  AGR DDV ++   L D+G
Sbjct: 538 SLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKG 597

Query: 524 LE 525
           ++
Sbjct: 598 MK 599



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 200/422 (47%), Gaps = 47/422 (11%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH--QVFDQMS 153
           +LL  C  + +++   ++H LI  + L       SKL+   A     D ++   +F  + 
Sbjct: 30  NLLAKCPDIPSLK---QIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIH 86

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           ++    F WN+LI  ++       ++ L+ QM   G+ P+  TFP + K+CA        
Sbjct: 87  HQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEA 146

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR------------------- 254
           +++H  A++        V  +L+ MY++ G++  AR VFD+                   
Sbjct: 147 KQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSE 206

Query: 255 ------------IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
                       I  KD++S+N+M+ GY+  G   EA   F  M      P+   + S+L
Sbjct: 207 GHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVL 266

Query: 303 ANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           +    LR   +G  +  WV  RG   +L + N+L+ +YSK G++  A  LFD M  KDV+
Sbjct: 267 SACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVI 326

Query: 360 SWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            WN++I  +   S   EAL+ FE M R+ V P+ +TF+++L ACA LG++ +G+ + + +
Sbjct: 327 LWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYI 386

Query: 417 ---VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
              ++  G    V  +  ++ +Y + G ++ A    V +     S   W A++    ++G
Sbjct: 387 DKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQ--VFRSMGSRSLASWNAMISGLAMNG 444

Query: 474 NV 475
           + 
Sbjct: 445 HA 446



 Score = 45.4 bits (106), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 19/210 (9%)

Query: 313 QVHGWVLRRGVEWDLCIANSLI--VVYSKDGKLDQACWLFD--HMPQKDVVSWNSIIHAH 368
           Q+H  +++ G+   L   + LI     S    L  A  LF   H    ++  WN++I AH
Sbjct: 43  QIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAH 102

Query: 369 S---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISP 424
           S       +L  F QM   G+ P+  TF SL  +CA   +    ++L +  ++    + P
Sbjct: 103 SLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHP 162

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET-AAQ 483
            V  +  ++++Y + G +  A      ++ F+ S  +  A+ +   + G V  G    A+
Sbjct: 163 HV--HTSLIHMYSQVGELRHA------RLVFDKS-TLRDAVSFTALITGYVSEGHVDDAR 213

Query: 484 KLF-ELEPDNEHNFELLIKIYGNAGRLDDV 512
           +LF E+   +  ++  +I  Y  +GR ++ 
Sbjct: 214 RLFDEIPAKDVVSWNAMIAGYVQSGRFEEA 243


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 251/447 (56%), Gaps = 10/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI +   T  S+   C   + +  G  +H         +     + LL +Y+  G +D 
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF +MS R+  ++   S+I+GYA  G   +A+ L+ +MEEEG+ PD +T   VL  C
Sbjct: 350 AKVVFREMSGRSVVSYT--SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A   L+  G++VH        GFD FV NAL+DMYAKCG + +A  VF  +  KD+IS+N
Sbjct: 408 ARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWN 467

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           +++ GY  +    EA  +F  +++   F PD   ++ +L   A+ S    G ++HG+++R
Sbjct: 468 TVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D  +ANSL+ +Y+K G L  A  LFD +  KD+VSW  +I     H    EA+  
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIAL 587

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM + G+ PD ++FVSLL AC+H G V  G R F++M  +  I P VEHYAC+V++  
Sbjct: 588 FNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 647

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G + +AY  I E M       +WGALL  C +H +V + E  A+K+FELEP+N   + 
Sbjct: 648 RTGNLSKAYRFI-ENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYV 706

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  IY  A + ++V+R+ + +  RGL
Sbjct: 707 LMANIYAEAEKWEEVKRLRKRIGQRGL 733



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 227/447 (50%), Gaps = 33/447 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+ + + TF+ + ++   L++V  G +LH  I  +   +   + + L+  Y     +
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRV 246

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A +VFD+M+ R   +  WNS+I+GY   G  E  ++++ QM   G+E D  T   V  
Sbjct: 247 DSARKVFDEMTERDVIS--WNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFA 304

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA   LI +G  VH   V+  F  +    N L+DMY+KCGD+  A+ VF  +  + ++S
Sbjct: 305 GCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVS 364

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           Y SM+ GY   GL  EA  +F  M   G  PD   ++++L   A   LL  G +VH W+ 
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK 424

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
              + +D+ ++N+L+ +Y+K G + +A  +F  M  KD++SWN++I  +SK+   +EAL 
Sbjct: 425 ENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALS 484

Query: 377 YFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVN 434
            F  +  +    PD  T   +L ACA L +   G  +   ++     S R  H A  +V+
Sbjct: 485 LFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVD 542

Query: 435 LYGRAGLIDEAYSMIVEKMEFE----ASPVVWGALLYACYLHGNVCMGETAAQKLFE--- 487
           +Y + G      ++++ ++ F+       V W  ++    +HG    G+ A   LF    
Sbjct: 543 MYAKCG------ALLLARLLFDDITSKDLVSWTVMIAGYGMHG---FGKEAIA-LFNQMR 592

Query: 488 ---LEPDNEHNFELLIKIYGNAGRLDD 511
              +EPD E +F  L+    ++G +D+
Sbjct: 593 QAGIEPD-EISFVSLLYACSHSGLVDE 618



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 196/364 (53%), Gaps = 11/364 (3%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +   T  S+L+ C   K+++ G ++   I  N    +  + SKL  +Y   G + EA +V
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FDQ+  +   A  WN L++  A+ G++  +I L+ +M   GVE D +TF  V K+ + L 
Sbjct: 152 FDQV--KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  GE++H   ++ GFG    V N+LV  Y K   +  AR VFD +  +D+IS+NS++ 
Sbjct: 210 SVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIIN 269

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           GY+ +GL  +   +F  M+ +G + D   I S+    A++ L+ +G  VH + ++     
Sbjct: 270 GYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSR 329

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           +    N+L+ +YSK G LD A  +F  M  + VVS+ S+I  ++++    EA+  FE+ME
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGL 441
            +G+ PD  T  ++L+ CA    +  G+R+   + E   G    V +   ++++Y + G 
Sbjct: 390 EEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGS 447

Query: 442 IDEA 445
           + EA
Sbjct: 448 MREA 451



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 173/376 (46%), Gaps = 54/376 (14%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  E   + GI+    T  ++L  C + + ++ G ++H  I  N +  +  +S+ L+ +
Sbjct: 382 VKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDM 441

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQ 194
           YA  G + EA  VF +M  R      WN++I GY++     +A++L+   + E+   PD+
Sbjct: 442 YAKCGSMREAELVFSEM--RVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDE 499

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL ACA L     G ++H   +R G+  D  V N+LVDMYAKCG ++ AR +FD 
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDD 559

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           I +KDL+S+  M+ GY  HG   EA  +F  M   G +PD ++  S+L   S    G   
Sbjct: 560 ITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACS--HSGLVD 617

Query: 315 HGW----VLRR------GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            GW    ++R        VE   CI + L    ++ G L +A    ++MP          
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDML----ARTGNLSKAYRFIENMP---------- 663

Query: 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
                                + PD   + +LL  C     VK+ ER+   + E   + P
Sbjct: 664 ---------------------IPPDATIWGALLCGCRIHHDVKLAERVAEKVFE---LEP 699

Query: 425 R-VEHYACMVNLYGRA 439
               +Y  M N+Y  A
Sbjct: 700 ENTGYYVLMANIYAEA 715


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 266/448 (59%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI   + T  SLL     L     G +LH  I  N +  +  + S L+ +Y     + 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVR 400

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  V+D  S++       +++ISGY   G  ++A+ ++  + E+G+ P+      VL A
Sbjct: 401 MAQSVYD--SSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA 458

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +++G+++H  A++  +    +V +AL+DMYAKCG +  +  +F +I  KD +++
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTW 518

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLR 320
           NSM++ +  +G   EA ++FR M + G     V ISS+L A ASL  I  G ++HG V++
Sbjct: 519 NSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK 578

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIY 377
             +  DL   ++LI +Y K G L+ A  +F+ MP+K+ VSWNSII    A+    E++  
Sbjct: 579 GPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSL 638

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
              M+ +G   DH+TF++L+SACAH G V+ G RLF  M E+Y I+PR+EH+ACMV+LY 
Sbjct: 639 LRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYS 698

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +D+A  +IV+ M F+    +WGALL+AC +H NV + E A+Q+LF+L+P N   + 
Sbjct: 699 RAGKLDKAMELIVD-MPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYV 757

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L+  I   AGR D V +V R++ D  ++
Sbjct: 758 LMSNINAVAGRWDGVSKVRRLMKDTKVQ 785



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 240/490 (48%), Gaps = 54/490 (11%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
            K  ++ S ++       +G      T A  L        +  G++LH L     L    
Sbjct: 223 VKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEV 282

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            +++ L+ +YA    +D+  ++F  M         WN +ISG  + G  + A+ L+  M+
Sbjct: 283 AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVT--WNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           + G+ PD  T   +L A   L     G+++H   VR     D F+++ALVD+Y KC  + 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVR 400

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
            A++V+D     D++  ++M++GY+ +G+  EA  +FR ++  G  P+ VAI+S+L   A
Sbjct: 401 MAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           + + +++G ++H + L+   E    + ++L+ +Y+K G+LD + ++F  +  KD V+WNS
Sbjct: 461 SMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNS 520

Query: 364 IIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF------- 413
           +I + +++    EAL  F +M  +GV   ++T  S+LSACA L ++  G+ +        
Sbjct: 521 MISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGP 580

Query: 414 --------SVMVEKYGISPRVE---------------HYACMVNLYGRAGLIDEAYSMIV 450
                   S +++ YG    +E                +  ++  YG  GL+ E+ S++ 
Sbjct: 581 IRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLR 640

Query: 451 EKME--FEASPVVWGALLYACYLHGNV--------CMGETAAQKLFELEPDNEHNFELLI 500
              E  F+A  V + AL+ AC   G V        CM E      +++ P  EH F  ++
Sbjct: 641 HMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE-----YQIAPRMEH-FACMV 694

Query: 501 KIYGNAGRLD 510
            +Y  AG+LD
Sbjct: 695 DLYSRAGKLD 704



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 172/334 (51%), Gaps = 10/334 (2%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS- 153
           ++L  C     +  G+++H R +   L   +  + ++L+ +Y       +A  VF  +  
Sbjct: 44  AVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGLIR 211
              A A PWN LI G    G+Y  A+  Y +M        PD  TFP V+K+CA LG I 
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G  VH  A   G   D FV +AL+ MYA  G +  AR VFD +  +D + +N M+ GY+
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLC 328
             G +  A ++F  M  +G +P+   ++   S+ A  S L  G Q+H   ++ G+E ++ 
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           +AN+L+ +Y+K   LD    LF  MP+ D+V+WN +I    ++    +AL+ F  M++ G
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           + PD +T VSLL A   L     G+ L   +V  
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 194/385 (50%), Gaps = 17/385 (4%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TF  ++++C  L A+  G  +HR   T  L  +  + S L+++YA  GL+ +A QVFD
Sbjct: 146 SHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFD 205

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M+ R      WN ++ GY + G    A+ L+  M   G EP+  T    L   A    +
Sbjct: 206 GMAERDCVL--WNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G ++H  AV++G   +  V N LV MYAKC  +     +F  +   DL+++N M++G 
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDL 327
           + +G + +A  +F  M  +G  PD V + S+L   + L     G ++HG+++R  V  D+
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV 383

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERD 384
            + ++L+ +Y K   +  A  ++D     DVV  +++I  +       EA+  F  +   
Sbjct: 384 FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ P+ +   S+L ACA + ++K+G+ L S  + K     R    + ++++Y + G +D 
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYAL-KNAYEGRCYVESALMDMYAKCGRLDL 502

Query: 445 A---YSMIVEKMEFEASPVVWGALL 466
           +   +S I  K E     V W +++
Sbjct: 503 SHYIFSKISAKDE-----VTWNSMI 522



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 13/293 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ GI       AS+L  C  + A++ G +LH     N       + S L+ +YA  G +
Sbjct: 441 LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRL 500

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D +H +F ++S +      WNS+IS +A+ GE E+A+ L+ +M  EGV+    T   VL 
Sbjct: 501 DLSHYIFSKISAKDEVT--WNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLS 558

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  I  G+++H   ++     D F  +AL+DMY KCG++  A  VF+ +  K+ +S
Sbjct: 559 ACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVS 618

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVH-GWVLRR 321
           +NS++  Y  +GL+ E+  + R M   GF  D V   + LA  S      QV  G  L R
Sbjct: 619 WNSIIASYGAYGLVKESVSLLRHMQEEGFKADHV---TFLALVSACAHAGQVQEGLRLFR 675

Query: 322 GVEWDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
            +  +  IA        ++ +YS+ GKLD+A  L   MP K D   W +++HA
Sbjct: 676 CMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHA 728


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 266/448 (59%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI   + T  SLL     L     G +LH  I  N +  +  + S L+ +Y     + 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVR 400

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  V+D  S++       +++ISGY   G  ++A+ ++  + E+G+ P+      VL A
Sbjct: 401 MAQSVYD--SSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA 458

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +++G+++H  A++  +    +V +AL+DMYAKCG +  +  +F +I  KD +++
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTW 518

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLR 320
           NSM++ +  +G   EA ++FR M + G     V ISS+L A ASL  I  G ++HG V++
Sbjct: 519 NSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK 578

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIY 377
             +  DL   ++LI +Y K G L+ A  +F+ MP+K+ VSWNSII    A+    E++  
Sbjct: 579 GPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSL 638

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
              M+ +G   DH+TF++L+SACAH G V+ G RLF  M E+Y I+PR+EH+ACMV+LY 
Sbjct: 639 LRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYS 698

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +D+A  +IV+ M F+    +WGALL+AC +H NV + E A+Q+LF+L+P N   + 
Sbjct: 699 RAGKLDKAMELIVD-MPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYV 757

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L+  I   AGR D V +V R++ D  ++
Sbjct: 758 LMSNINAVAGRWDGVSKVRRLMKDTKVQ 785



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 240/490 (48%), Gaps = 54/490 (11%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
            K  ++ S ++       +G      T A  L        +  G++LH L     L    
Sbjct: 223 VKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEV 282

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            +++ L+ +YA    +D+  ++F  M         WN +ISG  + G  + A+ L+  M+
Sbjct: 283 AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVT--WNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           + G+ PD  T   +L A   L     G+++H   VR     D F+++ALVD+Y KC  + 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVR 400

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
            A++V+D     D++  ++M++GY+ +G+  EA  +FR ++  G  P+ VAI+S+L   A
Sbjct: 401 MAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           + + +++G ++H + L+   E    + ++L+ +Y+K G+LD + ++F  +  KD V+WNS
Sbjct: 461 SMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNS 520

Query: 364 IIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF------- 413
           +I + +++    EAL  F +M  +GV   ++T  S+LSACA L ++  G+ +        
Sbjct: 521 MISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGP 580

Query: 414 --------SVMVEKYGISPRVE---------------HYACMVNLYGRAGLIDEAYSMIV 450
                   S +++ YG    +E                +  ++  YG  GL+ E+ S++ 
Sbjct: 581 IRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLR 640

Query: 451 EKME--FEASPVVWGALLYACYLHGNV--------CMGETAAQKLFELEPDNEHNFELLI 500
              E  F+A  V + AL+ AC   G V        CM E      +++ P  EH F  ++
Sbjct: 641 HMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE-----YQIAPRMEH-FACMV 694

Query: 501 KIYGNAGRLD 510
            +Y  AG+LD
Sbjct: 695 DLYSRAGKLD 704



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 172/334 (51%), Gaps = 10/334 (2%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS- 153
           ++L  C     +  G+++H R +   L   +  + ++L+ +Y       +A  VF  +  
Sbjct: 44  AVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGLIR 211
              A A PWN LI G    G+Y  A+  Y +M        PD  TFP V+K+CA LG I 
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G  VH  A   G   D FV +AL+ MYA  G +  AR VFD +  +D + +N M+ GY+
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLC 328
             G +  A ++F  M  +G +P+   ++   S+ A  S L  G Q+H   ++ G+E ++ 
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           +AN+L+ +Y+K   LD    LF  MP+ D+V+WN +I    ++    +AL+ F  M++ G
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           + PD +T VSLL A   L     G+ L   +V  
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 194/385 (50%), Gaps = 17/385 (4%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TF  ++++C  L A+  G  +HR   T  L  +  + S L+++YA  GL+ +A QVFD
Sbjct: 146 SHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFD 205

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M+ R      WN ++ GY + G    A+ L+  M   G EP+  T    L   A    +
Sbjct: 206 GMAERDCVL--WNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G ++H  AV++G   +  V N LV MYAKC  +     +F  +   DL+++N M++G 
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDL 327
           + +G + +A  +F  M  +G  PD V + S+L   + L     G ++HG+++R  V  D+
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV 383

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERD 384
            + ++L+ +Y K   +  A  ++D     DVV  +++I  +       EA+  F  +   
Sbjct: 384 FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ P+ +   S+L ACA + ++K+G+ L S  + K     R    + ++++Y + G +D 
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYAL-KNAYEGRCYVESALMDMYAKCGRLDL 502

Query: 445 A---YSMIVEKMEFEASPVVWGALL 466
           +   +S I  K E     V W +++
Sbjct: 503 SHYIFSKISAKDE-----VTWNSMI 522



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 13/293 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ GI       AS+L  C  + A++ G +LH     N       + S L+ +YA  G +
Sbjct: 441 LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRL 500

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D +H +F ++S +      WNS+IS +A+ GE E+A+ L+ +M  EGV+    T   VL 
Sbjct: 501 DLSHYIFSKISAKDEVT--WNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLS 558

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  I  G+++H   ++     D F  +AL+DMY KCG++  A  VF+ +  K+ +S
Sbjct: 559 ACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVS 618

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVH-GWVLRR 321
           +NS++  Y  +GL+ E+  + R M   GF  D V   + LA  S      QV  G  L R
Sbjct: 619 WNSIIASYGAYGLVKESVSLLRHMQEEGFKADHV---TFLALVSACAHAGQVQEGLRLFR 675

Query: 322 GVEWDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
            +  +  IA        ++ +YS+ GKLD+A  L   MP K D   W +++HA
Sbjct: 676 CMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHA 728


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 269/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C +LK  + G ++H  +       +  + + L+ +Y   G   +A
Sbjct: 98  GLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDA 157

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD  S+R   ++                              WN++ISGYA+ G  +
Sbjct: 158 HKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNK 217

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V+PD+ T   V+ ACA  G I++G +VH      G G +  ++NAL+
Sbjct: 218 EALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALI 277

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++  A  +F  + NKD+IS+N+M+ GY H  L  EA  +F+ M+ +G +P+ V
Sbjct: 278 DLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDV 337

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A    +  G  +H ++ +R  GV     +  SLI +Y+K G ++ A  +F+
Sbjct: 338 TMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 397

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  + + + N++I     H + + A   F +M ++G+ PD +TFV LLSAC+H G + +
Sbjct: 398 SMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 457

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G R+F  M + Y I+P++EHY CM++L G  GL  EA  MI   M  E   V+W +LL A
Sbjct: 458 GRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMI-NTMTMEPDGVIWCSLLKA 516

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE+ AQKL ++EP+N  ++ LL  IY  AGR ++V  +  +L D+G++
Sbjct: 517 CKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMK 573



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 234/473 (49%), Gaps = 61/473 (12%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR---LYATFGLIDEAHQVFDQM 152
           SLL  C  L+++   I   ++I T L   N  +S +LL    L   F  +  A  VF+ +
Sbjct: 7   SLLHNCKTLQSLR--IIHAQMIKTGLHNTNYALS-RLLEFCILSPNFDGLPYAISVFETI 63

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++  G+A   +   AI LY  M   G+ P+ +TFP +LK+CA L + + 
Sbjct: 64  QEPNLLI--WNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKE 121

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCG---------------DIV----------- 246
           G+++H   ++ G+  D +V  +L+ MY K G               D+V           
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181

Query: 247 -----KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAI 298
                 A+ +FD I  KD++S+N++++GY   G   EA D+F+ M+     PD    V +
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241

Query: 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
            S  A +  +++G QVH W+   G+  +L I N+LI +YSK G+++ AC LF  +  KDV
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDV 301

Query: 359 VSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SWN++I  ++  +   EAL+ F++M R G  P+ +T +S+L ACA LG++  G R   V
Sbjct: 302 ISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG-RWIHV 360

Query: 416 MVEKY--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++K   G++        ++++Y + G I+ A+ +         S     A+++   +HG
Sbjct: 361 YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC--NAMIFGFAMHG 418

Query: 474 NVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
                  AA  +F       +EPD +  F  L+    ++G LD   R+ R + 
Sbjct: 419 RA----NAAFDIFSRMRKNGIEPD-DITFVGLLSACSHSGMLDLGRRIFRSMT 466



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 180/377 (47%), Gaps = 37/377 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +ALD   + ++++V+        T  +++  C Q  +++ G ++H  I  + L  N  I 
Sbjct: 218 EALDLFKEMMKTNVKP----DESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIV 273

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ LY+  G ++ A  +F  +SN+   +  WN++I GY  L  Y++A+ L+ +M   G
Sbjct: 274 NALIDLYSKCGEVETACGLFQGLSNKDVIS--WNTMIGGYTHLNLYKEALLLFQEMLRSG 331

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             P+  T   +L ACA LG I  G  +H  +D    G      +  +L+DMYAKCGDI  
Sbjct: 332 ENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEA 391

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A  VF+ + ++ L + N+M+ G+  HG    AFDIF  M  NG +PD +    +L+  S 
Sbjct: 392 AHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS- 450

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
                  H  +L  G      I  S+   Y    KL+    + D +    +         
Sbjct: 451 -------HSGMLDLGRR----IFRSMTQNYKITPKLEHYGCMIDLLGHLGLF-------- 491

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
             K+ E +I    ME DGV+     + SLL AC   G+V++GE     +++    +P   
Sbjct: 492 --KEAEEMINTMTMEPDGVI-----WCSLLKACKMHGNVELGESFAQKLIKIEPENP--G 542

Query: 428 HYACMVNLYGRAGLIDE 444
            Y  + N+Y  AG  +E
Sbjct: 543 SYVLLSNIYATAGRWNE 559


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 259/483 (53%), Gaps = 9/483 (1%)

Query: 39  SRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLL 98
           S    T F  +    P   L N            D  I+        G      TF  +L
Sbjct: 60  SDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVL 119

Query: 99  ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158
           + C +L  ++ G+K+H L+       +  + + L+ LYA  G +++AH+VFD + ++   
Sbjct: 120 KACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVV 179

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           +  W ++ISGY  +G++ +AI ++ ++ E  + PD FT  RVL AC  LG +  GE +H 
Sbjct: 180 S--WTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK 237

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             +  G   + FV  +LVDMYAKCG++ KAR+VFD +  KD++S+ +M+ GY  +GL  E
Sbjct: 238 CIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKE 297

Query: 279 AFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A D+F  M      PD    V + S  A    L +G  V G V R    ++  +  +LI 
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERDGVLPDHLT 392
           +Y+K G + +A  +F  M +KD V WN+II   + +    I    F Q+E+ G+ PD  T
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNT 417

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           F+ LL  C H G V  G R F+ M   + ++P +EHY CMV+L GRAGL+DEA+ +I   
Sbjct: 418 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLI-RN 476

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
           M  EA+ +VWGALL AC +H +  + E A ++L ELEP N  N+ LL  IY    + D+ 
Sbjct: 477 MPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEA 536

Query: 513 ERV 515
            +V
Sbjct: 537 AKV 539



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 158/310 (50%), Gaps = 15/310 (4%)

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           RFG   D ++LN ++       D    R +F +I   ++  +N+M+ G + +    +A +
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 282 IFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
            +  M   GF P+      +L A A L  L++G ++H  V++ G + D+ +  SL+ +Y+
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G L+ A  +FD +P K+VVSW +II  +    K  EA+  F ++    + PD  T V 
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVR 218

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +LSAC  LG +  GE +   ++E  G+   V     +V++Y + G +++A S + + M  
Sbjct: 219 VLSACTQLGDLNSGEWIHKCIME-MGMVRNVFVGTSLVDMYAKCGNMEKARS-VFDGMP- 275

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN-EHNFELLIKIYGNAGRLDDVER 514
           E   V WGA++    L+G   + + A     +++ +N + +   ++ +     RL  +E 
Sbjct: 276 EKDIVSWGAMIQGYALNG---LPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALEL 332

Query: 515 VERM--LVDR 522
            E +  LVDR
Sbjct: 333 GEWVSGLVDR 342


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 156/387 (40%), Positives = 234/387 (60%), Gaps = 9/387 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AHQ+F Q+ N   F   WN++I GYAE      A+ LY QM    +EPD  T+P +LKA 
Sbjct: 93  AHQIFSQIQNPNIFT--WNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAI 150

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L  +R GEKVH  A+R GF    FV N LV MYA CG    A  +F+ +  ++L+++N
Sbjct: 151 AKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           S++ GY  +G   EA  +FR M L G +PD   + S+L   A    L +G + H ++++ 
Sbjct: 211 SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ +L   N+L+ +Y+K G + QA  +FD M +K VVSW S+I   + +    EAL  F
Sbjct: 271 GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELF 330

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           +++ER G++P  +TFV +L AC+H G V  G   F  M E+YGI P++EHY CMV+L GR
Sbjct: 331 KELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGR 390

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL+ +A+  I + M  + + VVW  LL AC +HG++ +GE A  +L +LEP +  ++ L
Sbjct: 391 AGLVKQAHEFI-QNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVL 449

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +Y +  R  DV +V R ++  G++
Sbjct: 450 LSNLYASEQRWSDVHKVRRTMLREGVK 476



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 12/292 (4%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I   T T+  LL+   +L  V  G K+H +   N       + + L+ +YA  G  + AH
Sbjct: 136 IEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAH 195

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           ++F+ M+ R      WNS+I+GYA  G   +A+ L+ +M   GVEPD FT   +L ACA 
Sbjct: 196 KLFELMAERNLVT--WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 253

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           LG + +G + H+  V+ G   +    NAL+D+YAKCG I +A  VFD +  K ++S+ S+
Sbjct: 254 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 313

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD 326
           + G   +G   EA ++F+ +   G  P  +    +L   S   +  +   +  R   E+ 
Sbjct: 314 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYG 373

Query: 327 LCIA----NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSI-----IHAH 368
           +         ++ +  + G + QA     +MP Q + V W ++     IH H
Sbjct: 374 IVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 159/304 (52%), Gaps = 21/304 (6%)

Query: 200 VLKACAGLGLIRVGEK-----VHLDAVRFGFGFDGFVLNA--LVDMYAKCGDIVKARTVF 252
           +LK C  L L     K     +H  ++R G       +    +  + + C  +  A  +F
Sbjct: 38  ILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIF 97

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD----PVAISSILANASLL 308
            +I N ++ ++N+M+ GY      + A +++R M ++  +PD    P  + +I A    +
Sbjct: 98  SQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAI-AKLMDV 156

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
           R G +VH   +R G E  + + N+L+ +Y+  G  + A  LF+ M ++++V+WNS+I+ +
Sbjct: 157 REGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGY 216

Query: 369 S---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           +   + +EAL  F +M   GV PD  T VSLLSACA LG++ +G R    MV K G+   
Sbjct: 217 ALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV-KVGLDGN 275

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +     +++LY + G I +A+  + ++ME E S V W +L+    ++G    G+ A +  
Sbjct: 276 LHAGNALLDLYAKCGSIRQAHK-VFDEME-EKSVVSWTSLIVGLAVNG---FGKEALELF 330

Query: 486 FELE 489
            ELE
Sbjct: 331 KELE 334



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 12/246 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  SLL  C +L A+  G + H  +    L  N    + LL LYA  G I +A
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H+VFD+M  ++  +  W SLI G A  G  ++A+ L+ ++E +G+ P + TF  VL AC+
Sbjct: 296 HKVFDEMEEKSVVS--WTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACS 353

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG-NKDLIS 262
             G++  G   +   ++  +G    +     +VD+  + G + +A      +    + + 
Sbjct: 354 HCGMVDEGFD-YFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVV 412

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDP----DPVAISSILANASLLRIGAQVHGWV 318
           + ++L     HG L    ++ R  +L   +P    D V +S++ A+        +V   +
Sbjct: 413 WRTLLGACTIHGHLALG-EVARAQLLQ-LEPKHSGDYVLLSNLYASEQRWSDVHKVRRTM 470

Query: 319 LRRGVE 324
           LR GV+
Sbjct: 471 LREGVK 476


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/496 (35%), Positives = 284/496 (57%), Gaps = 26/496 (5%)

Query: 39  SRNRITTFSSYPKSSP--TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFAS 96
           SR RI   S++P +SP    L +N++       +AL      LE  +Q G+ V+ + + S
Sbjct: 436 SRQRIL-LSTFPANSPDLKTLCSNRQL-----KEAL------LEMGIQ-GLEVEFQGYDS 482

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +L  C    A+  G ++H  +          + ++L+ LY     + +A +V D+M  R 
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  W ++ISGY++ G   +A+ L+ +M   G  P++FTF  VL +C      ++G ++
Sbjct: 543 VVS--WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H   ++  F    FV ++L+DMYAK G I +AR VFD +  +D++S  ++++GY   GL 
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 660

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSL 333
            EA D+FR +   G   + V  +S+L   S L     G QVH  VLR  + + + + NSL
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 720

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQM-ERDGVLPD 389
           I +YSK G L  +  +FD MP++ V+SWN+++  +SK     EA+  F+ M E + V PD
Sbjct: 721 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 780

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMV-EKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
            +TF+++LS C+H G    G  +F  MV +K G  P +EHY C+V+L+GRAG ++EA+  
Sbjct: 781 SVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEF 840

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I +KM FE +  +WG+LL AC +H NV +GE  A++L E+E +N  N+ +L  +Y +AGR
Sbjct: 841 I-KKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 899

Query: 509 LDDVERVERMLVDRGL 524
            DDV  V  ++ ++ +
Sbjct: 900 WDDVRTVRELMKEKAV 915


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 268/477 (56%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C + KA E G ++H  +       +  + + L+ +YA  G +++A
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD+ S+R   ++                              WN++ISGYAE G Y+
Sbjct: 121 HKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYK 180

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V PD+ T   VL ACA    + +G +VH      GFG +  ++NAL+
Sbjct: 181 EALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALI 240

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG +  A  +F+ +  KD++S+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 241 DLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 300

Query: 297 AISSIL---ANASLLRIGAQVHGWVLR--RGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            I SIL   A+   + IG  +H ++ +  + V     +  SLI +Y+K G ++ A  +F+
Sbjct: 301 TIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFN 360

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  K + SWN++I     H + +     F +M ++G+ PD +TFV LLSAC+H G + +
Sbjct: 361 SMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDL 420

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M + Y I+P++EHY CM++L G +GL  EA  MI + M  E   V+W +LL A
Sbjct: 421 GRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMI-KTMPMEPDGVIWCSLLKA 479

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C  HGN+ + E+ A+ L ++EP+N  ++ LL  IY  AG  D+V +V  +L  +G++
Sbjct: 480 CRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMK 536



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 202/390 (51%), Gaps = 45/390 (11%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN+++ GYA   +   A+ LY  M   G+ P+ +TFP +LK+CA       G+++H   +
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY------------------ 263
           + G+  D +V  +L+ MYA+ G +  A  VFDR  ++D++SY                  
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 264 -------------NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASL 307
                        N+M++GY   G   EA ++F+ M+     PD    V + S  A +  
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           + +G QVH W+   G   +L I N+LI +YSK G+++ AC LF+ +  KDVVSWN++I  
Sbjct: 214 VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGG 273

Query: 368 HSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--YGI 422
           ++  +   EAL+ F++M R G  P+ +T VS+L ACAHLG++ +G R   V ++K    +
Sbjct: 274 YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG-RWIHVYIDKKLKDV 332

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +        ++++Y + G I+ A+ +    +    S   W A+++   +HG    G    
Sbjct: 333 TNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS--WNAMIFGFAMHGRANAGFDLF 390

Query: 483 QKLFE--LEPDNEHNFELLIKIYGNAGRLD 510
            ++ +  +EPD+   F  L+    ++G+LD
Sbjct: 391 SRMRKNGIEPDDI-TFVGLLSACSHSGKLD 419



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 38/235 (16%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A +VF  I   + + +N+ML GY      V A  ++  MI  G  P+      +L   A 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD-------------------- 344
           +     G Q+HG VL+ G E DL +  SLI +Y+++G+L+                    
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 345 -----------QACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
                       A  +FD +P KDVVSWN++I  +++     EAL  F++M +  V PD 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            T V++LSACA   SV++G ++ S  ++ +G    ++    +++LY + G ++ A
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHS-WIDDHGFGSNLKIVNALIDLYSKCGQVETA 252


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 257/440 (58%), Gaps = 10/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  +L+ C  L  VE G ++H  +    L  +  + + LL +YA FG +  A  VFD+M
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + R   +  WN++ISGYA+  +   A  ++  M + G+  D  T   +L ACA L  ++ 
Sbjct: 223 AERDLTS--WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKE 280

Query: 213 GEKVHLDAVRFGFG-FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           G+ +H  AVR   G ++ F  N+L++MY  C  +V AR +F+R+  KD +S+NSM+ GY 
Sbjct: 281 GKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYA 340

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLC 328
            +G   E+  +FR M L+G  PD V   ++L      + LR G  +H +++++G + +  
Sbjct: 341 RNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTI 400

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +  +L+ +YSK G L  +  +FD MP K +VSW++++     H +  EA+   + M+ + 
Sbjct: 401 VGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANS 460

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V+PD+  F S+LSAC+H G V  G+ +F  M ++Y + P + HY+CMV+L GRAG +DEA
Sbjct: 461 VIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEA 520

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y +I+  ME + +  +W ALL A  LH N+ + E +AQK+F++ P    ++  L  IY  
Sbjct: 521 Y-VIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAA 579

Query: 506 AGRLDDVERVERMLVDRGLE 525
             R DDVERV  M+  +GL+
Sbjct: 580 EKRWDDVERVRAMVRRKGLK 599



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 208/391 (53%), Gaps = 21/391 (5%)

Query: 95  ASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            +LL++    K+ + G +LH  +I  ++L  N  +++KL   YA  GL+ +A  +FD + 
Sbjct: 63  GALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIV 122

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            + +F   WN +I GYA  G    ++ LY +M   G   D FT+P VLKAC  L L+ +G
Sbjct: 123 LKNSFL--WNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIG 180

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +VH + V  G   D +V N+L+ MYAK GD+  AR VFDR+  +DL S+N+M++GY  +
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKN 240

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGV-EWDLCI 329
                AF +F  M   G   D   +  +L+  + L+    G  +HG+ +R  +  ++   
Sbjct: 241 ADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFF 300

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            NSLI +Y     +  A  LF+ +  KD VSWNS+I  ++++    E+L  F +M  DG 
Sbjct: 301 TNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS 360

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF+++L AC  + +++ G  + S +V+K G          +V++Y + G      
Sbjct: 361 GPDQVTFIAVLGACDQIAALRYGMSIHSYLVKK-GFDANTIVGTALVDMYSKCG------ 413

Query: 447 SMIVEKMEFEASP----VVWGALLYACYLHG 473
           S+   +  F+  P    V W A++    LHG
Sbjct: 414 SLACSRRVFDEMPDKSLVSWSAMVAGYGLHG 444



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK-NKGISSKLLRLYATFGLI 142
           + G+     T   LL  C  LKAV+ G  +H     N +   NK  ++ L+ +Y     +
Sbjct: 255 KAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCM 314

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A ++F+++  R      WNS+I GYA  G+  +++ L+ +M  +G  PDQ TF  VL 
Sbjct: 315 VDARRLFERV--RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLG 372

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  +  +R G  +H   V+ GF  +  V  ALVDMY+KCG +  +R VFD + +K L+S
Sbjct: 373 ACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS 432

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +++M+ GY  HG   EA  I  GM  N   PD    +SIL+  S
Sbjct: 433 WSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACS 476


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 258/440 (58%), Gaps = 10/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA-HQVFDQ 151
           T   +++ C  L  +  G  +H +     L  +  + + L+ +Y   GL++EA  +VFD 
Sbjct: 210 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDL 269

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M  +T  +  WN+L+ GYA+  +   A+ LY QM + G++PD FT   +L AC+ +  + 
Sbjct: 270 MDTKTVSS--WNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLH 327

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            GE++H  A+R G   D F+  +L+ +Y  CG    A+ +FD + ++ L+S+N M+ GY 
Sbjct: 328 YGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYS 387

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLC 328
            +GL  EA ++FR M+ +G  P  +AI  +    +  S LR+G ++H + L+  +  D+ 
Sbjct: 388 QNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIF 447

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +++S+I +Y+K G +  +  +FD + +KDV SWN II     H +  EAL  FE+M R G
Sbjct: 448 VSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG 507

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD  TF  +L AC+H G V+ G   F+ M+  + I P++EHY C+V++ GRAG ID+A
Sbjct: 508 LKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDA 567

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I E+M  +    +W +LL +C +HGN+ +GE  A KL ELEP+   N+ L+  ++  
Sbjct: 568 LRLI-EEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAG 626

Query: 506 AGRLDDVERVERMLVDRGLE 525
           +G+ DDV RV   + D GL+
Sbjct: 627 SGKWDDVRRVRGRMKDIGLQ 646



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 146/497 (29%), Positives = 249/497 (50%), Gaps = 49/497 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI- 128
           +ALD + ++ +  V +    ++E    LL+ C Q K +E G +LH ++  +    N  + 
Sbjct: 85  EALDFLQRESDDVVLDSAQ-RSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVL 143

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EE 187
           +++++ +Y+  G   ++  VFD++  R    F WN+++S Y     +EDA++++ ++   
Sbjct: 144 NTRIITMYSMCGSPSDSRMVFDKL--RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISV 201

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
              +PD FT P V+KACAGL  + +G+ +H  A +     D FV NAL+ MY KCG + +
Sbjct: 202 TEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 261

Query: 248 A-RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           A + VFD +  K + S+N++L GY  +    +A D++  M  +G DPD   I S+L   S
Sbjct: 262 AVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321

Query: 307 LLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            ++    G ++HG+ LR G+  D  I  SL+ +Y   GK   A  LFD M  + +VSWN 
Sbjct: 322 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 381

Query: 364 IIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF------- 413
           +I  +S++    EA+  F QM  DG+ P  +  + +  AC+ L ++++G+ L        
Sbjct: 382 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 441

Query: 414 --------SVMVEKY------GISPR---------VEHYACMVNLYGRAGLIDEAYSMIV 450
                   S +++ Y      G+S R         V  +  ++  YG  G   EA  +  
Sbjct: 442 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 501

Query: 451 EKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFEL---EPDNEHNFELLIKIYGN 505
           + +     P    +  +L AC   G V  G     ++  L   EP  EH +  ++ + G 
Sbjct: 502 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEH-YTCVVDMLGR 560

Query: 506 AGRLDDVER-VERMLVD 521
           AGR+DD  R +E M  D
Sbjct: 561 AGRIDDALRLIEEMPGD 577


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 266/477 (55%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  LL++C + KA   G ++H  +       +  + + L+ +Y   G +++A
Sbjct: 83  GLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDA 142

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            +VFDQ S+R   ++                              WN++ISGYAE G  +
Sbjct: 143 RKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 202

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V PD+ T   V+ ACA    I +G +VH      GFG +  ++NAL+
Sbjct: 203 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 262

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y KCG++  A  +F+ +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 263 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 322

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV        SLI +Y+K G ++ A  +FD
Sbjct: 323 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFD 382

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +  + + SWN++I     H + + A   F +M ++ + PD +TFV LLSAC+H G + +
Sbjct: 383 SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDL 442

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M E Y I+P++EHY CM++L G +GL  EA  MI   ME E   V+W +LL A
Sbjct: 443 GRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKA 501

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE+ AQ L ++EP N  ++ LL  IY  AGR ++V ++  +L D+G++
Sbjct: 502 CKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMK 558



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 220/439 (50%), Gaps = 49/439 (11%)

Query: 115 RLIPTNLLRKNKGISS--KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           ++I T L   N  +S   +   L   F  +  A  VF+ +         WN++  G+A  
Sbjct: 9   QMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLI--WNTMFRGHALS 66

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
            +   A+ LY  M   G+ P+ +TFP +LK+CA     R G+++H   ++ G+  D +V 
Sbjct: 67  SDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVH 126

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV--------------- 277
            +L+ MY + G +  AR VFD+  ++D++SY +++TGY   G +                
Sbjct: 127 TSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVV 186

Query: 278 ----------------EAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWV 318
                           EA ++F+ M+     PD    V++ S  A ++ + +G QVH W+
Sbjct: 187 SWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 246

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
              G   +L I N+LI +Y K G+++ AC LF+ +  KDV+SWN++I  ++  +   EAL
Sbjct: 247 DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEAL 306

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GISPRVEHYACMV 433
           + F++M R G  P+ +T +S+L ACAHLG++++G R   V + K   G++    H   ++
Sbjct: 307 LLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG-RWIHVYINKRLKGVANASSHRTSLI 365

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG--NVCMGETAAQKLFELEPD 491
           ++Y + G I+ A  +    +    S   W A+++   +HG  N      +  +  E+EPD
Sbjct: 366 DMYAKCGDIEAAQQVFDSILNRSLSS--WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 423

Query: 492 NEHNFELLIKIYGNAGRLD 510
           +   F  L+    ++G LD
Sbjct: 424 DI-TFVGLLSACSHSGMLD 441



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 44/300 (14%)

Query: 216 VHLDAVRFGFGFDGFVLNALVD---MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           +H   ++ G     + L+ L++   +      +  A +VF+ I   +L+ +N+M  G+  
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
               V A  ++  MI  G  P+      +L   A +   R G Q+HG VL+ G + DL +
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 330 ANSLIVVYSKDGKLD-------------------------------QACWLFDHMPQKDV 358
             SLI +Y ++G+L+                                A  +FD +P KDV
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 359 VSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSWN++I  +++   + EAL  F++M +  V PD  T VS++SACA   S+++G ++ S 
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS- 244

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            ++ +G    ++    +++LY + G ++ A  +  E + ++   + W  L+   Y H N+
Sbjct: 245 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF-EGLSYK-DVISWNTLI-GGYTHMNL 301



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS------SKLLRLY 136
           +++G +    T  S+L  C  L A+E G  +H  I   L    KG++      + L+ +Y
Sbjct: 313 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRL----KGVANASSHRTSLIDMY 368

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G I+ A QVFD + NR+  +  WN++I G+A  G    A  ++ +M +  +EPD  T
Sbjct: 369 AKCGDIEAAQQVFDSILNRSLSS--WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDIT 426

Query: 197 FPRVLKACAGLGLIRVGEKV 216
           F  +L AC+  G++ +G  +
Sbjct: 427 FVGLLSACSHSGMLDLGRHI 446


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 250/447 (55%), Gaps = 10/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI +   T  S+   C   + +  G  +H +       +     + LL +Y+  G +D 
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF +MS+R+  ++   S+I+GYA  G   +A+ L+ +MEEEG+ PD +T   VL  C
Sbjct: 350 AKAVFREMSDRSVVSYT--SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A   L+  G++VH        GFD FV NAL+DMYAKCG + +A  VF  +  KD+IS+N
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           +++ GY  +    EA  +F  ++    F PD   ++ +L   A+ S    G ++HG+++R
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D  +ANSL+ +Y+K G L  A  LFD +  KD+VSW  +I     H    EA+  
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 587

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM + G+  D ++FVSLL AC+H G V  G R F++M  +  I P VEHYAC+V++  
Sbjct: 588 FNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 647

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G + +AY  I E M       +WGALL  C +H +V + E  A+K+FELEP+N   + 
Sbjct: 648 RTGDLIKAYRFI-ENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 706

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  IY  A + + V+R+ + +  RGL
Sbjct: 707 LMANIYAEAEKWEQVKRLRKRIGQRGL 733



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 209/403 (51%), Gaps = 22/403 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+ + + TF+ + ++   L++V  G +LH  I  +   +   + + L+  Y     +
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 246

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A +VFD+M+ R   +  WNS+I+GY   G  E  ++++ QM   G+E D  T   V  
Sbjct: 247 DSARKVFDEMTERDVIS--WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA   LI +G  VH   V+  F  +    N L+DMY+KCGD+  A+ VF  + ++ ++S
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           Y SM+ GY   GL  EA  +F  M   G  PD   ++++L   A   LL  G +VH W+ 
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
              + +D+ ++N+L+ +Y+K G + +A  +F  M  KD++SWN+II  +SK+   +EAL 
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 484

Query: 377 YFE-QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVN 434
            F   +E     PD  T   +L ACA L +   G  +   ++     S R  H A  +V+
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVD 542

Query: 435 LYGRAGLIDEAYSMIVEKMEFE--ASP--VVWGALLYACYLHG 473
           +Y + G      ++++  M F+  AS   V W  ++    +HG
Sbjct: 543 MYAKCG------ALLLAHMLFDDIASKDLVSWTVMIAGYGMHG 579



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 196/364 (53%), Gaps = 11/364 (3%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +   T  S+L+ C   K+++ G ++   I  N    +  + SKL  +Y   G + EA +V
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD++  +   A  WN L++  A+ G++  +I L+ +M   GVE D +TF  V K+ + L 
Sbjct: 152 FDEV--KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  GE++H   ++ GFG    V N+LV  Y K   +  AR VFD +  +D+IS+NS++ 
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 269

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           GY+ +GL  +   +F  M+++G + D   I S+    A++ L+ +G  VH   ++     
Sbjct: 270 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 329

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           +    N+L+ +YSK G LD A  +F  M  + VVS+ S+I  ++++    EA+  FE+ME
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGL 441
            +G+ PD  T  ++L+ CA    +  G+R+   + E   G    V +   ++++Y + G 
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGS 447

Query: 442 IDEA 445
           + EA
Sbjct: 448 MQEA 451



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 172/379 (45%), Gaps = 60/379 (15%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  E   + GI+    T  ++L  C + + ++ G ++H  I  N L  +  +S+ L+ +
Sbjct: 382 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDM 441

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQ 194
           YA  G + EA  VF +M  R      WN++I GY++     +A++L+   +EE+   PD+
Sbjct: 442 YAKCGSMQEAELVFSEM--RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 499

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL ACA L     G ++H   +R G+  D  V N+LVDMYAKCG ++ A  +FD 
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 559

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           I +KDL+S+  M+ GY  HG   EA  +F  M   G + D ++  S+L   S    G   
Sbjct: 560 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS--HSGLVD 617

Query: 315 HGW----VLRR------GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            GW    ++R        VE   CI + L    ++ G L +A    ++MP          
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDML----ARTGDLIKAYRFIENMP---------- 663

Query: 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV----KVGERLFSVMVEKY 420
                                + PD   + +LL  C     V    KV E++F +  E  
Sbjct: 664 ---------------------IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENT 702

Query: 421 GISPRVEHYACMVNLYGRA 439
           G      +Y  M N+Y  A
Sbjct: 703 G------YYVLMANIYAEA 715


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 267/484 (55%), Gaps = 30/484 (6%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTE----------------TFASLLETCYQLKAVE 108
           PKT L   + +I      VQNG   +                  TF+S L    +   + 
Sbjct: 310 PKTDLVTWNGMI---SGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLR 366

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLIS 167
            G ++H  I  N +  +  + S L+ +Y     ++ A ++FDQ   RT        ++IS
Sbjct: 367 QGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQ---RTPVDIVVCTAMIS 423

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
           GY   G   +A+ ++  + +E +  +  T   VL ACAGL  + +G+++H   ++ G G 
Sbjct: 424 GYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGG 483

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
             +V +A++DMYAKCG +  A   F  I +KD + +NSM+T    +G   EA D+FR M 
Sbjct: 484 SCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMG 543

Query: 288 LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           + G   D V+IS+ L   AN   L  G ++H +++R     DL   ++LI +YSK G LD
Sbjct: 544 MAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLD 603

Query: 345 QACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            AC +FD M +K+ VSWNSII A   H +  ++L  F  M  DG+ PDH+TF++++SAC 
Sbjct: 604 LACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACG 663

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G V  G   F  M E+ GI  R+EHYACMV+L+GRAG ++EA+ MI   M F     V
Sbjct: 664 HAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMI-NSMPFSPDAGV 722

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WG LL AC LHGNV + E A++ LF+L+P N   + LL  ++ NAG+ + V ++  ++ +
Sbjct: 723 WGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKE 782

Query: 522 RGLE 525
           RG++
Sbjct: 783 RGVQ 786



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 223/407 (54%), Gaps = 14/407 (3%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           +I + L+ S+ N  ++  +   S+L+TC     +  G + H  +  N +  N  + +KLL
Sbjct: 30  NIGKPLQFSIHNDDSLAPQ-LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLL 88

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            +Y   G   +A  +F Q+  R   + PWN +I G+  +G+++ A+  YF+M   G  PD
Sbjct: 89  GMYVLCGAFLDAKNIFYQL--RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPD 146

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           ++TFP V+KAC GL  + +G  VH D ++F GF  D FV ++L+  Y++ G I  AR +F
Sbjct: 147 KYTFPYVIKACGGLNSVALGRVVH-DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLF 205

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
           DR+ +KD + +N ML GY+ +G    A  +F  M     +P+ V  + +L   A+  ++ 
Sbjct: 206 DRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMIN 265

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G+Q+HG V+  G+E D  +AN+L+ +Y+K G L  A  LFD MP+ D+V+WN +I  + 
Sbjct: 266 FGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYV 325

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           ++    EA   F +M    + PD +TF S L   +   +++ G+ +   ++ + G+S  V
Sbjct: 326 QNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYII-RNGVSLDV 384

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
              + ++++Y +   ++ A  +  ++   +   VV  A++    L+G
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQRTPVDI--VVCTAMISGYVLNG 429



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 205/388 (52%), Gaps = 13/388 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +++ C  L +V  G  +H  I       +  + S L++ Y+  G I +A  +FD+M
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++      WN +++GY + G++++A  ++ +M      P+  TF  VL  CA   +I  
Sbjct: 209 PSKDGVL--WNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINF 266

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   V  G   D  V N L+ MYAKCG +  AR +FD +   DL+++N M++GY+ 
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQ 326

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G + EA  +F  MI     PD +  SS   +L+  + LR G ++H +++R GV  D+ +
Sbjct: 327 NGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFL 386

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
            ++LI +Y K   ++ A  +FD     D+V   ++I  +     ++ AL  F  + ++ +
Sbjct: 387 KSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 446

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             + +T  S+L ACA L ++ +G+ L   ++   +G S  V   + ++++Y + G +D A
Sbjct: 447 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLA 504

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHG 473
           +   +   + +A  V W +++ +C  +G
Sbjct: 505 HQTFIGISDKDA--VCWNSMITSCSQNG 530


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/433 (37%), Positives = 250/433 (57%), Gaps = 9/433 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S L+ C  +  V+ G +LH  +    +  +  +   L+ +Y+  GL+ +A  VFD M
Sbjct: 291 TLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLM 350

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WNS+ISGY+  G   +A++L+  M +EG+E +Q T   +LK+ AG      
Sbjct: 351 PXKDVIV--WNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            E+VH  +++ G+ +DG+V N+L+D Y KC  +  A  VF+    +DL++Y SM+T Y  
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL  EA  ++  M      PD    SS+    AN S    G Q+H  VL+ G+  D+  
Sbjct: 469 YGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFA 528

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            NSL+ +Y+K G +D A  +F+ +  + +VSW+++I     H    +AL  F QM ++G+
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGI 588

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           LP+H+T VS+LSAC H G V    R F +M + +GI+P  EHYACMV++ GR G +DEA 
Sbjct: 589 LPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAM 648

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            ++V++M F+AS  VWGALL A  +H N+ +G  AA+ L  LEP+      LL  IY + 
Sbjct: 649 -VLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYAST 707

Query: 507 GRLDDVERVERML 519
           G  D+V +V R +
Sbjct: 708 GMWDNVAKVRRSM 720



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 232/476 (48%), Gaps = 56/476 (11%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI+    + +++L  C  L+   +G+K+H  +       +   ++ LL +YA  G  
Sbjct: 180 ISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCP 239

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  VF ++      +  WN++I+G     + + A+ L  +M    V P  FT    LK
Sbjct: 240 EAAIAVFYEIPKPDIVS--WNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALK 297

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA +GL+++G ++H   ++     D FV   L+DMY+KCG +  AR VFD +  KD+I 
Sbjct: 298 ACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIV 357

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA---QVHGWVL 319
           +NS+++GY + G  +EA  +F  M   G + +   +S+IL + +  +      QVH   +
Sbjct: 358 WNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISI 417

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           + G ++D  +ANSL+  Y K   L+ A  +F+  P +D+V++ S+I A+S+     EAL 
Sbjct: 418 KSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALK 477

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            + +M+   + PD   F SL +ACA+L + + G+++  V V K G+   V     +VN+Y
Sbjct: 478 MYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI-HVHVLKCGLLSDVFAGNSLVNMY 536

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ------------- 483
            + G ID+A S I  ++ +    V W A++     HG+   G  A Q             
Sbjct: 537 AKCGSIDDA-SCIFNEISWRG-IVSWSAMIGGLAQHGH---GRKALQLFYQMLKNGILPN 591

Query: 484 ----------------------------KLFELEPDNEHNFELLIKIYGNAGRLDD 511
                                       KLF + P  EH +  ++ I G  GRLD+
Sbjct: 592 HITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEH-YACMVDILGRVGRLDE 646



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 190/417 (45%), Gaps = 60/417 (14%)

Query: 160 FPWNSLISGYA-----ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           F ++S++ G +     ELG+    +AL  +M   G+ P++F+   VL ACAGL     G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           KVH   ++ G+  D F  NAL+DMYAK G    A  VF  I   D++S+N+++ G + H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
               A  +   M      P    +SS L   A   L+++G Q+H  +++  +E D  +  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLP 388
            LI +YSK G L  A  +FD MP KDV+ WNSII  +S    D EA+  F  M ++G+  
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 389 DHLTFVSLLSACA-----------HLGSVKVGER----LFSVMVEKYGISPRVEH----- 428
           +  T  ++L + A           H  S+K G +    + + +++ YG    +E      
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 429 ----------YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVC 476
                     Y  M+  Y + GL +EA  M +   + +  P   ++ +L  AC    N+ 
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC---ANLS 505

Query: 477 MGETAAQ---------KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             E   Q          L ++   N      L+ +Y   G +DD   +   +  RG+
Sbjct: 506 AYEQGKQIHVHVLKCGLLSDVFAGNS-----LVNMYAKCGSIDDASCIFNEISWRGI 557



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 150/289 (51%), Gaps = 7/289 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T +++L++    +A     ++H +   +  + +  +++ LL  Y    L++
Sbjct: 383 KEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLE 442

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF+        A+   S+I+ Y++ G  E+A+ +Y +M++  ++PD F F  +  A
Sbjct: 443 DAAKVFEVCPAEDLVAY--TSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNA 500

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L     G+++H+  ++ G   D F  N+LV+MYAKCG I  A  +F+ I  + ++S+
Sbjct: 501 CANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSW 560

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
           ++M+ G   HG   +A  +F  M+ NG  P+ + + S+L+   +A L+    +  G + +
Sbjct: 561 SAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEK 620

Query: 321 R-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             G+         ++ +  + G+LD+A  L   MP Q     W +++ A
Sbjct: 621 LFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGA 669



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 57/281 (20%)

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           V++Y+KC     AR +       DL+S++++++GY+ +G   EA   +  M L G   + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 296 VAISSILANASLLR-------------------------------------------IGA 312
              SS+L   SL R                                            G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           +VHG++++ G + D   AN+L+ +Y+K G  + A  +F  +P+ D+VSWN++I     H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           K+  AL    +M    V P   T  S L ACA +G VK+G +L S ++ K  + P     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALM-KMDMEPDSFVG 327

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL 466
             ++++Y + GL+ +A      +M F+  P    +VW +++
Sbjct: 328 VGLIDMYSKCGLLQDA------RMVFDLMPXKDVIVWNSII 362


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 258/480 (53%), Gaps = 40/480 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V +GI     T   +L+ C        G+ +H       +  +  + + +L +Y   GLI
Sbjct: 126 VCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLI 185

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD +S RT  +  WNS+I+GY+++G  E+A+ ++ +M+E G+EPD FT   +L 
Sbjct: 186 TSARRVFDDISERTLVS--WNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLS 243

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
                G   +G  VHL  V  G   D  V NAL+DMYAKCG++  A++VFD++ +KD++S
Sbjct: 244 VSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVS 303

Query: 263 YNSMLTGYIHHGLL-------------------------------VEAFDIFRGMILNGF 291
           +  M+  Y +HGL+                                EA D+F  M  +G 
Sbjct: 304 WTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGV 363

Query: 292 ---DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
              D   VAI S  ++   L +G Q H ++    +     + N++I +Y+K G L  A  
Sbjct: 364 MANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMD 423

Query: 349 LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F  MP+K+ VSWN II A   H    EA+  FE+M+  GV PD +TF  LLSAC+H G 
Sbjct: 424 VFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGL 483

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           V  G+  F +M   +GISP VEHYACMV+L GR GL+ EA S+I +KM  +   VVW AL
Sbjct: 484 VDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLI-KKMPVKPDVVVWSAL 542

Query: 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L AC  +GN+ +G+   ++L EL   N   + LL  +Y  + R DD++ + ++L   G++
Sbjct: 543 LGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIK 602



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 236/489 (48%), Gaps = 67/489 (13%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEH---GIKLHRLIPTNLLR 123
           T+ Q   +I+Q+L+S          +T   L++ C  LK ++H    I LH L  T +L 
Sbjct: 19  TETQISKTILQELKSPTH-------QTLHYLIDQCISLKQLKHVHAQIILHGL-ATQVLT 70

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
             K +SS +         +  AH++FDQ+     F F  N LI GY+   +   ++ LY 
Sbjct: 71  LGKLVSSSV-----QLRDLRYAHKLFDQIPQPNKFMF--NHLIKGYSNSSDPIKSLLLYR 123

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M  +G+ P+QFT P VLKACA      +G  VH  + + G G    V NA++++Y  CG
Sbjct: 124 RMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACG 183

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            I  AR VFD I  + L+S+NSM+ GY   G   EA  +FR M   G +PD   +  +L+
Sbjct: 184 LITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLS 243

Query: 304 NASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL----------------- 343
            ++      +G  VH  ++  G+E D  + N+L+ +Y+K G L                 
Sbjct: 244 VSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVS 303

Query: 344 --------------DQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
                         D A   F+ MP K+VVSWNSII  H ++    EA+  F +M   GV
Sbjct: 304 WTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGV 363

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           + +  T V++LS+C+H+G + +G++  S + +   I+        ++++Y + G +  A 
Sbjct: 364 MANDTTLVAILSSCSHMGDLALGKQAHSYIFDN-NITLSATLCNAIIDMYAKCGALQTAM 422

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE-----PDNEHNFELLIK 501
            +     E  A  V W  ++ A  LHG    G+ A +   +++     PD E  F  L+ 
Sbjct: 423 DVFFGMPEKNA--VSWNVIIGALALHG---YGKEAIEMFEKMQASGVCPD-EITFTGLLS 476

Query: 502 IYGNAGRLD 510
              ++G +D
Sbjct: 477 ACSHSGLVD 485


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 261/481 (54%), Gaps = 39/481 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G      TF S+ ++C +++    G ++H  +    L  N  + + L+ +YA  G +
Sbjct: 120 ISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGEL 179

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
             A  VFD+ S R A +F                              WN++ISGYA+ G
Sbjct: 180 VNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSG 239

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVL 232
             E+A+A + +M    V P+  T   VL ACA  G  +++G  V       G G +  ++
Sbjct: 240 RVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLV 299

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N L+DMY KCGD+ +A  +F++I +K+++S+N M+ GY H     EA  +FR M+ +  D
Sbjct: 300 NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNID 359

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLR--RGVEWDLCIANSLIVVYSKDGKLDQAC 347
           P+ V   SIL   AN   L +G  VH +V +  + ++  + +  SLI +Y+K G L  A 
Sbjct: 360 PNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAK 419

Query: 348 WLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +FD M  K + +WN++I     H     AL  F +M  +G +PD +TFV +L+AC H G
Sbjct: 420 RIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAG 479

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            + +G R FS M++ Y +SP++ HY CM++L+GRAGL DEA ++ V+ ME +    +W +
Sbjct: 480 LLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETL-VKNMEMKPDGAIWCS 538

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL AC +H  + + E+ A+ LFELEP+N   + LL  IY  AGR +DV ++   L D  +
Sbjct: 539 LLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM 598

Query: 525 E 525
           +
Sbjct: 599 K 599



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 201/421 (47%), Gaps = 48/421 (11%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT--FGLIDEAHQVFDQMS 153
           +LL  C  L+ ++   ++H  I    L       SKL+   A    G +  A  +F  + 
Sbjct: 33  TLLSNCKTLQTLK---QIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR 89

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N       WN +I G +       A+  Y  M   G EP+++TFP + K+C  +     G
Sbjct: 90  NPNHVI--WNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEG 147

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR------------------- 254
           ++VH   ++ G   + FV  +L++MYA+ G++V AR VFD+                   
Sbjct: 148 KQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASK 207

Query: 255 ------------IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
                       I  +D++S+N+M++GY   G + EA   F  M      P+   + S+L
Sbjct: 208 GFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVL 267

Query: 303 A----NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           +    + S L++G  V  W+  RG+  ++ + N LI +Y K G L++A  LF+ +  K+V
Sbjct: 268 SACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNV 327

Query: 359 VSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSWN +I  +   S   EAL  F +M +  + P+ +TF+S+L ACA+LG++ +G+ + + 
Sbjct: 328 VSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAY 387

Query: 416 MVEKY-GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           + +    +   V  +  ++++Y + G  D A +  +       S   W A++    +HG+
Sbjct: 388 VDKNMKSMKNTVALWTSLIDMYAKCG--DLAVAKRIFDCMNTKSLATWNAMISGFAMHGH 445

Query: 475 V 475
            
Sbjct: 446 T 446


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 277/489 (56%), Gaps = 43/489 (8%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +  D++S  ++GI     TF +LL  C   +    G ++H  +    + KN  + ++L+ 
Sbjct: 465 LYHDMQS--EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH 522

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y+  G ++ A ++F++M+ R A++  WNS+I GY + GE ++A+ L+ QM+  G++PD 
Sbjct: 523 MYSECGRLNYAKEIFNRMAERNAYS--WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           F+   +L +C  L   + G ++H   VR     +G +   LVDMYAKCG +  A  V+D+
Sbjct: 581 FSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ 640

Query: 255 IGNKDLIS-------------------------------YNSMLTGYIHHGLLVEAFDIF 283
              KD+I                                +NS+L GY + GL  E+F+ F
Sbjct: 641 TIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHF 700

Query: 284 RGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSK 339
             M+ +  + D    V I ++ ++   L  G Q+H  ++++G V   + +  +L+ +YSK
Sbjct: 701 LEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK 760

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSL 396
            G + +A  +FD+M  K++VSWN++I  +SK     EALI +E+M + G+ P+ +TF+++
Sbjct: 761 CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 820

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           LSAC+H G V+ G R+F+ M E Y I  + EHY CMV+L GRAG +++A    VEKM  E
Sbjct: 821 LSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKE-FVEKMPIE 879

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
                WGALL AC +H ++ MG  AAQ+LFEL+P N   + ++  IY  AGR  +VE + 
Sbjct: 880 PEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIR 939

Query: 517 RMLVDRGLE 525
           +M+  +G++
Sbjct: 940 QMMKMKGVK 948



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 226/434 (52%), Gaps = 25/434 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TFAS L  C  L++ + G ++H  +     + +  + + L+ +YA     +  
Sbjct: 271 GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 330

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD+M  R      WNS+IS  A+ G + DA+ L+ +M+E G + ++F    +L A A
Sbjct: 331 LKVFDEMGERNQVT--WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL  I  G ++H   VR     D  + +ALVDMY+KCG + +A  VF  +  ++ +SYN+
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNA 448

Query: 266 MLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +L GY+  G   EA +++  M   +G  PD    +++L   AN      G Q+H  ++R 
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 508

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
            +  ++ +   L+ +YS+ G+L+ A  +F+ M +++  SWNS+I  + ++    EAL  F
Sbjct: 509 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 568

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV----EKYGISPRVEHYACMVN 434
           +QM+ +G+ PD  +  S+LS+C  L   + G  L + +V    E+ GI   V     +V+
Sbjct: 569 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV-----LVD 623

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF-ELEPDNE 493
           +Y + G +D A+ +  + ++     V+   ++ + +++         A+ LF ++E  N 
Sbjct: 624 MYAKCGSMDYAWKVYDQTIK---KDVILNNVMVSAFVNSGRA---NDAKNLFDQMEQRNT 677

Query: 494 HNFELLIKIYGNAG 507
             +  ++  Y N G
Sbjct: 678 ALWNSILAGYANKG 691



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 139/513 (27%), Positives = 254/513 (49%), Gaps = 78/513 (15%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G         S+L     L  +  G +LH  +  NLL  +  + S L+ +Y+  G+++
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLK 202
           EAHQVF  +  R   ++  N+L++GY + G+ E+A+ LY  M+ E+G++PDQFTF  +L 
Sbjct: 430 EAHQVFRSLLERNEVSY--NALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA       G ++H   +R     +  V   LV MY++CG +  A+ +F+R+  ++  S
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 547

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVL 319
           +NSM+ GY  +G   EA  +F+ M LNG  PD  ++SS+L++   L   + G ++H +++
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607

Query: 320 RRGVE----------------------W---------DLCIANSLIVVYSKDGKLDQACW 348
           R  +E                      W         D+ + N ++  +   G+ + A  
Sbjct: 608 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667

Query: 349 LFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           LFD M Q++   WNSI+  ++      E+  +F +M    +  D LT V++++ C+ L +
Sbjct: 668 LFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA-------------------- 445
           ++ G++L S++++K  ++  V     +V++Y + G I +A                    
Sbjct: 728 LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 787

Query: 446 -YS---------MIVEKMEFEA---SPVVWGALLYACYLHGNVCMGE---TAAQKLFELE 489
            YS         ++ E+M  +    + V + A+L AC   G V  G    T+ Q+ + +E
Sbjct: 788 GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIE 847

Query: 490 PDNEHNFELLIKIYGNAGRLDDV-ERVERMLVD 521
              EH +  ++ + G AGRL+D  E VE+M ++
Sbjct: 848 AKAEH-YTCMVDLLGRAGRLEDAKEFVEKMPIE 879



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 205/381 (53%), Gaps = 13/381 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF S+++ C  ++ +    +L   +    L  N  +   L+  YA FG +D+A    D++
Sbjct: 177 TFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI 236

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
              +     WN++I+GY ++  +E+A  ++ +M + GV PD FTF   L+ C  L     
Sbjct: 237 EGTSVVT--WNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 294

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   +  GF  D FV NAL+DMYAKC D      VFD +G ++ +++NS+++    
Sbjct: 295 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRIGA--QVHGWVLRRGVEWDLCI 329
            G   +A  +F  M  +G+  +   + SIL A+A L  IG   ++HG ++R  +  D+ +
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEAL-IYFEQMERDG 385
            ++L+ +YSK G +++A  +F  + +++ VS+N+++  +    K  EAL +Y +    DG
Sbjct: 415 GSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDG 474

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY---GRAGLI 442
           + PD  TF +LL+ CA+  +   G ++ + ++ +  I+  +     +V++Y   GR    
Sbjct: 475 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI-RANITKNIIVETELVHMYSECGRLNYA 533

Query: 443 DEAYSMIVEKMEFEASPVVWG 463
            E ++ + E+  +  + ++ G
Sbjct: 534 KEIFNRMAERNAYSWNSMIEG 554



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 208/407 (51%), Gaps = 21/407 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE---AHQVFD 150
           ++SL++ C    + + G  +H  + +N    +  + +K+L LYA  G +D+   A ++F+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  R   A  WN++I  YA + +Y + + LY +M   G   D+FTFP V+KAC  +  +
Sbjct: 134 EMPERNLTA--WNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDM 191

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
               ++    V+ G   + FV  ALVD YA+ G +  A T  D I    ++++N+++ GY
Sbjct: 192 GGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGY 251

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDL 327
           +      EA+ IF  M+  G  PD    +S L     LR    G QVH  ++  G + D 
Sbjct: 252 VKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDT 311

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERD 384
            + N+LI +Y+K    +    +FD M +++ V+WNSII A ++    ++AL+ F +M+  
Sbjct: 312 FVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 371

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G   +     S+L A A L  +  G  L   +V    ++  +   + +V++Y + G+++E
Sbjct: 372 GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEE 430

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           A+   V +   E + V + ALL A Y+       E  A++  EL  D
Sbjct: 431 AHQ--VFRSLLERNEVSYNALL-AGYVQ------EGKAEEALELYHD 468



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 43/213 (20%)

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           + Y+S++   I          I   MI NG++PD   ++ IL                  
Sbjct: 72  LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKIL------------------ 113

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACW---LFDHMPQKDVVSWNSIIHAHSK--DH-EA 374
                         ++Y++ G LD  C+   LF+ MP++++ +WN++I A+++  D+ E 
Sbjct: 114 --------------MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEV 159

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  + +M   G   D  TF S++ AC  +  +  G R     V K G++  +     +V+
Sbjct: 160 LRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMG-GVRQLQSSVVKAGLNCNLFVGGALVD 218

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVV-WGALL 466
            Y R G +D+A + +    E E + VV W A++
Sbjct: 219 GYARFGWMDDAVTSLD---EIEGTSVVTWNAVI 248


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 250/447 (55%), Gaps = 10/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI +   T  S+   C   + +  G  +H +       +     + LL +Y+  G +D 
Sbjct: 139 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 198

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF +MS+R+  ++   S+I+GYA  G   +A+ L+ +MEEEG+ PD +T   VL  C
Sbjct: 199 AKAVFREMSDRSVVSY--TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 256

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A   L+  G++VH        GFD FV NAL+DMYAKCG + +A  VF  +  KD+IS+N
Sbjct: 257 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 316

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           +++ GY  +    EA  +F  ++    F PD   ++ +L   A+ S    G ++HG+++R
Sbjct: 317 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 376

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D  +ANSL+ +Y+K G L  A  LFD +  KD+VSW  +I     H    EA+  
Sbjct: 377 NGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 436

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM + G+  D ++FVSLL AC+H G V  G R F++M  +  I P VEHYAC+V++  
Sbjct: 437 FNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 496

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G + +AY  I E M       +WGALL  C +H +V + E  A+K+FELEP+N   + 
Sbjct: 497 RTGDLIKAYRFI-ENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 555

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  IY  A + + V+R+ + +  RGL
Sbjct: 556 LMANIYAEAEKWEQVKRLRKRIGQRGL 582



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 209/403 (51%), Gaps = 22/403 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+ + + TF+ + ++   L++V  G +LH  I  +   +   + + L+  Y     +
Sbjct: 36  MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 95

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A +VFD+M+ R   +  WNS+I+GY   G  E  ++++ QM   G+E D  T   V  
Sbjct: 96  DSARKVFDEMTERDVIS--WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 153

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA   LI +G  VH   V+  F  +    N L+DMY+KCGD+  A+ VF  + ++ ++S
Sbjct: 154 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 213

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           Y SM+ GY   GL  EA  +F  M   G  PD   ++++L   A   LL  G +VH W+ 
Sbjct: 214 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 273

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
              + +D+ ++N+L+ +Y+K G + +A  +F  M  KD++SWN+II  +SK+   +EAL 
Sbjct: 274 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 333

Query: 377 YFE-QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVN 434
            F   +E     PD  T   +L ACA L +   G  +   ++     S R  H A  +V+
Sbjct: 334 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVD 391

Query: 435 LYGRAGLIDEAYSMIVEKMEFE--ASP--VVWGALLYACYLHG 473
           +Y + G      ++++  M F+  AS   V W  ++    +HG
Sbjct: 392 MYAKCG------ALLLAHMLFDDIASKDLVSWTVMIAGYGMHG 428



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 162/294 (55%), Gaps = 9/294 (3%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           A  WN L++  A+ G++  +I L+ +M   GVE D +TF  V K+ + L  +  GE++H 
Sbjct: 9   ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 68

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             ++ GFG    V N+LV  Y K   +  AR VFD +  +D+IS+NS++ GY+ +GL  +
Sbjct: 69  FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 128

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
              +F  M+++G + D   I S+    A++ L+ +G  VH   ++     +    N+L+ 
Sbjct: 129 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 188

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLT 392
           +YSK G LD A  +F  M  + VVS+ S+I  ++++    EA+  FE+ME +G+ PD  T
Sbjct: 189 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 248

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEA 445
             ++L+ CA    +  G+R+   + E   G    V +   ++++Y + G + EA
Sbjct: 249 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEA 300



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 172/379 (45%), Gaps = 60/379 (15%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  E   + GI+    T  ++L  C + + ++ G ++H  I  N L  +  +S+ L+ +
Sbjct: 231 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDM 290

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQ 194
           YA  G + EA  VF +M  R      WN++I GY++     +A++L+   +EE+   PD+
Sbjct: 291 YAKCGSMQEAELVFSEM--RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 348

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL ACA L     G ++H   +R G+  D  V N+LVDMYAKCG ++ A  +FD 
Sbjct: 349 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 408

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           I +KDL+S+  M+ GY  HG   EA  +F  M   G + D ++  S+L   S    G   
Sbjct: 409 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS--HSGLVD 466

Query: 315 HGW----VLRR------GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            GW    ++R        VE   CI + L    ++ G L +A    ++MP          
Sbjct: 467 EGWRFFNIMRHECKIEPTVEHYACIVDML----ARTGDLIKAYRFIENMP---------- 512

Query: 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV----KVGERLFSVMVEKY 420
                                + PD   + +LL  C     V    KV E++F +  E  
Sbjct: 513 ---------------------IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENT 551

Query: 421 GISPRVEHYACMVNLYGRA 439
           G      +Y  M N+Y  A
Sbjct: 552 G------YYVLMANIYAEA 564


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 261/448 (58%), Gaps = 13/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+ S+L TC  L+AV+ G ++H  +     + N  +SS L+ +YA  G +D A
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHA 527

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F ++  +   +  W ++I+GYA+  ++ +A+ L+ +M+++G+  D   F   + ACA
Sbjct: 528 LKIFRRLKEKDVVS--WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA 585

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +  G+++H  A   G+  D  V NALV +YA+CG +  A   FD+I +KD IS+NS
Sbjct: 586 GIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNS 645

Query: 266 MLTGYIHHGLLVEAFDIFR-----GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           +++G+   G   EA  +F      G  +N F   P   ++        ++G Q+H  +++
Sbjct: 646 LISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANV--KLGKQIHAMIIK 703

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIY 377
            G + +  ++N LI +Y+K G +D A   F  MP+K+ +SWN+++  +S+     +AL  
Sbjct: 704 TGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSL 763

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE M++ GVLP+H+TFV +LSAC+H+G V  G + F  M E +G+ P+ EHYAC+V+L G
Sbjct: 764 FEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLG 823

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R+GL+  A    VE+M  +   +V   LL AC +H N+ +GE AA  L ELEP +   + 
Sbjct: 824 RSGLLSRA-RRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYV 882

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  +Y   G+    +R  +M+ DRG++
Sbjct: 883 LLSNMYAVTGKWGCRDRTRQMMKDRGVK 910



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 201/388 (51%), Gaps = 11/388 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ASLL  C  + A+  G + H       +  +  +   LL LY     I  AH+ F  +
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF--L 431

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S  T     WN ++  Y  L    ++  ++ QM+ EG+EP+QFT+P +L+ C+ L  + +
Sbjct: 432 STETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDL 491

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H   ++ GF F+ +V + L+DMYAK G +  A  +F R+  KD++S+ +M+ GY  
Sbjct: 492 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQ 551

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           H    EA ++F+ M   G   D +  +S +   A    L  G Q+H      G   DL +
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSV 611

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+ +Y++ GK+  A + FD +  KD +SWNS+I   ++     EAL  F QM + G 
Sbjct: 612 GNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ 671

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             +  TF   +SA A++ +VK+G+++ + M+ K G     E    ++ LY + G ID+A 
Sbjct: 672 EINSFTFGPAVSAAANVANVKLGKQIHA-MIIKTGHDSETEVSNVLITLYAKCGNIDDAE 730

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGN 474
               E    E + + W A+L     HG+
Sbjct: 731 RQFFEMP--EKNEISWNAMLTGYSQHGH 756



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 208/391 (53%), Gaps = 12/391 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGI-KLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           +Q  +     T+A +L  C       H + K+H    T+    +  + + L+ LY   G 
Sbjct: 161 LQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGF 220

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           ++ A +VFD +  R + +  W +++SG ++ G  E+A+ L+ QM   GV P  + F  VL
Sbjct: 221 LNSAKKVFDGLQKRDSVS--WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVL 278

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC  +   +VGE++H   ++ GF  + +V NALV +Y++ G+ + A  VF+ +  +D +
Sbjct: 279 SACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEV 338

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWV 318
           SYNS+++G    G   +A ++F+ M L+   PD V ++S+L+  S    L +G Q H + 
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYA 398

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEAL 375
           ++ G+  D+ +  +L+ +Y K   +  A   F     ++VV WN ++ A+      +E+ 
Sbjct: 399 IKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESF 458

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F QM+ +G+ P+  T+ S+L  C+ L +V +GE++ +  V K G    V   + ++++
Sbjct: 459 KIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHT-QVLKTGFQFNVYVSSVLIDM 517

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           Y + G +D A   I  +++ E   V W A++
Sbjct: 518 YAKLGKLDHALK-IFRRLK-EKDVVSWTAMI 546



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 229/456 (50%), Gaps = 23/456 (5%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+   ++T+  LL+ C        G KLH  I          +  +L+ LY  FG +D
Sbjct: 61  ERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLD 120

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  VFD+M  R      WN ++  +         + L+ +M +E V+PD+ T+  VL+ 
Sbjct: 121 GAVTVFDEMPVRPLSC--WNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178

Query: 204 CAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           C G  +     EK+H   +  G+    FV N L+D+Y K G +  A+ VFD +  +D +S
Sbjct: 179 CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVS 238

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           + +ML+G    G   EA  +F  M  +G  P P   SS+L+  +     ++G Q+HG VL
Sbjct: 239 WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVL 298

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           ++G   +  + N+L+ +YS+ G    A  +F+ M Q+D VS+NS+I   S+     +AL 
Sbjct: 299 KQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALE 358

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M  D + PD +T  SLLSAC+ +G++ VG++  S  + K G+S  +     +++LY
Sbjct: 359 LFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAI-KAGMSSDIILEGALLDLY 417

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEP 490
            +   I  A+   +   E E + V+W  +L A  L  N+      + K+F       +EP
Sbjct: 418 VKCSDIKTAHEFFLS-TETE-NVVLWNVMLVAYGLLDNL----NESFKIFTQMQMEGIEP 471

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
            N+  +  +++   +   +D  E++   ++  G +F
Sbjct: 472 -NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF 506



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 142/291 (48%), Gaps = 15/291 (5%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           MEE GV  +  T+  +L  C   G    G K+H   ++ GF  +  +   L+D+Y   GD
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  A TVFD +  + L  +N +L  ++   +      +FR M+     PD    + +L  
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178

Query: 305 AS----LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
                       ++H   +  G E  L + N LI +Y K+G L+ A  +FD + ++D VS
Sbjct: 179 CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVS 238

Query: 361 WNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W +++   S+   + EA++ F QM   GV P    F S+LSAC  +   KVGE+L   +V
Sbjct: 239 WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHG-LV 297

Query: 418 EKYGISPRVEHYAC--MVNLYGRAGLI---DEAYSMIVEKMEFEASPVVWG 463
            K G S  +E Y C  +V LY R G     ++ ++ ++++ E   + ++ G
Sbjct: 298 LKQGFS--LETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISG 346


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 162/448 (36%), Positives = 250/448 (55%), Gaps = 12/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     T +S+L  C  L      + +H     + L     + + ++ +Y   G++
Sbjct: 162 VMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGML 221

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           +E  +VFD MS+R      WNS+ISG+ + G+   A+ ++  M + GV PD  T   +  
Sbjct: 222 EEVRKVFDGMSSRDLVT--WNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLAS 279

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           A A  G I  G  VH   VR G+     +  NA+VDMYAK   I  A+ +FD +  +D +
Sbjct: 280 AIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAV 339

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANAS---LLRIGAQVHGW 317
           S+N+++TGY+ +GL  EA  ++  M  + G  P      S+L   S    L+ G ++H  
Sbjct: 340 SWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHAL 399

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            ++ G+  D+ +   +I +Y+K GKLD+A  LF+  P++    WN++I     H    +A
Sbjct: 400 SIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKA 459

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F QM+++G+ PDH+TFVSLL+AC+H G V  G   F++M   YGI P  +HYACMV+
Sbjct: 460 LSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVD 519

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           ++GRAG +D+A+  I   M  +    +WGALL AC +HGNV MG+ A+Q LFEL+P N  
Sbjct: 520 MFGRAGQLDDAFDFI-RNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVG 578

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522
            + L+  +Y   G+ D V+ V R LV R
Sbjct: 579 YYVLMSNMYAKVGKWDGVDEV-RSLVRR 605



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 234/436 (53%), Gaps = 48/436 (11%)

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
            LLR +   S  L+  Y  FG + +A++ FD+M +R   A  WN+++SG        +A+
Sbjct: 98  GLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPA--WNAMLSGLCRNARAAEAV 155

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
            L+ +M  EGV  D  T   VL  C  LG   +   +HL AV+ G   + FV NA++D+Y
Sbjct: 156 GLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVY 215

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---V 296
            K G + + R VFD + ++DL+++NS+++G+   G +  A ++F GM  +G  PD    +
Sbjct: 216 GKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLL 275

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +++S +A    +  G  VH +++RRG +  D+   N+++ +Y+K  K++ A  +FD MP 
Sbjct: 276 SLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPV 335

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +D VSWN++I  + ++    EA+  ++ M++ +G+ P   TFVS+L A +HLG+++ G R
Sbjct: 336 RDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR 395

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM----------------------- 448
           + ++ + K G++  V    C+++LY + G +DEA  +                       
Sbjct: 396 MHALSI-KTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHG 454

Query: 449 -------IVEKMEFEA-SP--VVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNEHN 495
                  +  +M+ E  SP  V + +LL AC   G V  G       Q  + ++P  +H 
Sbjct: 455 HGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKH- 513

Query: 496 FELLIKIYGNAGRLDD 511
           +  ++ ++G AG+LDD
Sbjct: 514 YACMVDMFGRAGQLDD 529



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 16/275 (5%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTV 251
           D FTFP +L+A  G G      ++H  A+R G    D F   ALV  Y + G +  A   
Sbjct: 70  DAFTFPPLLRAAQGPG---TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL--- 308
           FD + ++D+ ++N+ML+G   +    EA  +F  M++ G   D V +SS+L    LL   
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +   +H + ++ G++ +L + N++I VY K G L++   +FD M  +D+V+WNSII  H
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 369 SKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            +  +   A+  F  M   GV PD LT +SL SA A  G +  G  +   MV +      
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +     +V++Y +   I+ A  M      F++ PV
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRM------FDSMPV 335


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 172/503 (34%), Positives = 264/503 (52%), Gaps = 79/503 (15%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           S        ++T+A  ++   + +A+  G  LH  +    L +    ++KL+  Y   G 
Sbjct: 18  STHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQ 77

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +  A ++FD++ N       W  L    A  G YE+A++ + +M++EG+ P+QF  P +L
Sbjct: 78  LSNARKLFDKIPNTNIRR--WIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSIL 135

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           KAC  L   R GE +H   ++  F  D ++++AL+ MY+KCG + KA  VFD I +KDL+
Sbjct: 136 KACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLV 195

Query: 262 SYNSMLTGYIHHGLLVEAF-----------------------------------DIFRGM 286
             N+M++GY  HG + EA                                    ++FR M
Sbjct: 196 VMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLM 255

Query: 287 ILNGFDPDPVAISSILAN-----------------------------ASLL--------- 308
             NG +PD V+ +S+++                              +SLL         
Sbjct: 256 TANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANL 315

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           R G ++HG+ +  GVE D+ + ++L+ +Y+K G + +A  LF  MP+++ V+WNS+I   
Sbjct: 316 RHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGY 375

Query: 368 --HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
             H   +EA+  F QME      DHLTF ++L+AC+H G V++GE LF  M EKY I PR
Sbjct: 376 ANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPR 435

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +EHYACMV+L GRAG + EAY +I + M  E    VWGALL AC  HGN+ + E AA+ L
Sbjct: 436 LEHYACMVDLLGRAGKLSEAYDLI-KAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHL 494

Query: 486 FELEPDNEHNFELLIKIYGNAGR 508
           FELEP++  +  LL  +Y +AGR
Sbjct: 495 FELEPESPGSSLLLSNLYADAGR 517


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 158/438 (36%), Positives = 254/438 (57%), Gaps = 14/438 (3%)

Query: 97   LLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
            L+ T    K +    +LH LI TN +L  N  +++KLL +Y     + +A+ +FD+M  +
Sbjct: 1085 LISTLLNCKNICQIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQK 1144

Query: 156  TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
               +  W+ +I G+ ++GE+      + ++   GV+PD +T P V+KAC     + +G  
Sbjct: 1145 NPVS--WSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRL 1202

Query: 216  VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            +H   +++G   D FV  ALVDMYAKC  I  A+ +FD + +KDL+++  M+ GY   G 
Sbjct: 1203 IHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGN 1262

Query: 276  LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-----VHGWVLRRGVEWDLCIA 330
              E+  +F  +   GF PD +A+ SI+   +  ++GA      VH +V R     D+ + 
Sbjct: 1263 AKESLVLFDHLREEGFVPDKIAMVSIVNACA--KLGAMNKARFVHEYVNRNRFSLDVILG 1320

Query: 331  NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
             ++I +Y+K G +D A  +FD+M  K+V+SW+++I A   H +  +AL  F  M   G+L
Sbjct: 1321 TAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGIL 1380

Query: 388  PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
            P+++TFVSLL AC+H G V+ G  L S+M E +G+ P ++H+ CMV+L GRAG + EA+ 
Sbjct: 1381 PNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFR 1440

Query: 448  MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
             I E M  E    +W +LL AC +H  + + E AA+ L EL+P N  N+ LL  IY NAG
Sbjct: 1441 FI-ENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYANAG 1499

Query: 508  RLDDVERVERMLVDRGLE 525
            +  DV ++  ++  R L+
Sbjct: 1500 QWKDVAKIRDLMTKRKLK 1517



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 154/290 (53%), Gaps = 7/290 (2%)

Query: 83   VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
            ++NG+     T   +++ C    A++ G  +H ++    L  +  + + L+ +YA   +I
Sbjct: 1173 IRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVI 1232

Query: 143  DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            ++A  +FD M ++      W  +I GYAE G  ++++ L+  + EEG  PD+     ++ 
Sbjct: 1233 EDAKLLFDVMPSKDLVT--WTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVN 1290

Query: 203  ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            ACA LG +     VH    R  F  D  +  A++DMYAKCGD+  AR +FD + +K++IS
Sbjct: 1291 ACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVIS 1350

Query: 263  YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
            +++M+  Y +HG   +A ++F  M+ +G  P+ +   S+L   ++A L+  G  +   + 
Sbjct: 1351 WSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMW 1410

Query: 320  RR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
               GV  D+     ++ +  + G+L +A    ++M  +KD   W+S++ A
Sbjct: 1411 ESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGA 1460


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/432 (36%), Positives = 246/432 (56%), Gaps = 11/432 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + T  S L +C  LK +E GIK+H+L+  N L++   + + L+ +Y+  G +DEA  VF 
Sbjct: 285 SATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFA 344

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +   +      W S+I+GY   G  + A+AL   M+ +GV P+  T   +L ACA L  +
Sbjct: 345 ETKEKDVIT--WTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCL 402

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           + G+ +H   +R     D  V+ AL+DMYAKC  +  +  VF +   K  + +N++L+G 
Sbjct: 403 KQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGL 462

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV---HGWVLRRGVEWDL 327
           IH+ L  EA  +F+ M++   + +    +S++   ++L    QV   H +++R G    +
Sbjct: 463 IHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKI 522

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHA---HSKDHEALIYFEQME 382
            +   LI +YSK G LD A  +FD +P  +KD++ W+ +I     H     A++ F QM 
Sbjct: 523 AVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMV 582

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ P+ +TF S+L AC+H G V  G  LF  M+E Y  SP   HY C+V+L GRAG +
Sbjct: 583 HSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRL 642

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           DEAY +I + M F+ +  +WGALL AC +H NV +GE AA++LFELEP++  N+ LL  I
Sbjct: 643 DEAYDLI-KSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANI 701

Query: 503 YGNAGRLDDVER 514
           Y   GR  D E 
Sbjct: 702 YAAVGRWKDAEN 713



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 206/406 (50%), Gaps = 15/406 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S L   YA  G +  A ++FD +S+ + F   WN++I  Y + G + DA+ ++  M  
Sbjct: 119 LPSHLAVSYAFCGCVPLARKLFDDLSDPSLFL--WNAIIKMYVDKGFHFDALRVFDSMIC 176

Query: 188 EG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            G   PD++TFP V+KAC+ + ++ VG  +H  A+  GF  + FV N+L+ MY  CG + 
Sbjct: 177 SGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVG 236

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR VF+ +  + ++S+N+M++G+  +G   EA  +F  M+    +PD   I S L +  
Sbjct: 237 LARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCG 296

Query: 307 LLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            L+   +G +VH  V +  ++  + + N+L+ +YS+ G +D+A  +F    +KDV++W S
Sbjct: 297 HLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTS 356

Query: 364 IIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I+ +        AL     M+ DGV+P+ +T  SLLSACA L  +K G+ L + ++ K 
Sbjct: 357 MINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRK- 415

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
            +   V     ++++Y +   +  ++ +  +       P  W ALL    +H  +     
Sbjct: 416 KLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVP--WNALLSG-LIHNELAREAV 472

Query: 481 AAQK--LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
              K  L E    N   F  +I  Y     L  V  +   LV  G 
Sbjct: 473 GLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGF 518



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 170/385 (44%), Gaps = 54/385 (14%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T ASLL  C  L  ++ G  LH  +    L  +  + + L+ +YA    +  
Sbjct: 380 DGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSY 439

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           + QVF + S +     PWN+L+SG        +A+ L+  M  E VE +  TF  V+ A 
Sbjct: 440 SFQVFAKTSMKR--TVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAY 497

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLIS 262
           A L  ++    +H   VR GF     V+  L+DMY+KCG +  A  +FD I N  KD+I 
Sbjct: 498 AILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIV 557

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           ++ ++ GY  HG    A  +F  M+ +G  P+ +  +S+L   S   L+  G  +  +++
Sbjct: 558 WSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMI 617

Query: 320 RRGVEWDLCIANSLIV-VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378
                  L    + +V +  + G+LD+A  L   MP                       F
Sbjct: 618 ENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMP-----------------------F 654

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVG----ERLFSVMVEKYGISPRVEHYACMVN 434
           +Q        +H  + +LL AC    +V++G    ERLF +  E  G      +Y  + N
Sbjct: 655 QQ--------NHSIWGALLGACLIHQNVELGEVAAERLFELEPESTG------NYILLAN 700

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASP 459
           +Y   G   +A     E  + + SP
Sbjct: 701 IYAAVGRWKDA-----ENHKLQLSP 720


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 263/446 (58%), Gaps = 15/446 (3%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +TF  L+ +C Q  ++ +G+ +HR +  +   ++  +++KL+ +Y   G ID A +VFD+
Sbjct: 79  QTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDE 138

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-- 209
              RT +   WN+L    A +G  ++ + LY QM   G   D+FT+  VLKAC    L  
Sbjct: 139 TRERTIYV--WNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSV 196

Query: 210 --IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
             +R G+++H   +R G+  +  V+  L+D+YAK G +  A +VF  +  K+ +S+++M+
Sbjct: 197 CPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMI 256

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
             +  + + ++A ++F+ M+    +  P+ V + ++L   A  + L  G  +HG++LRR 
Sbjct: 257 ACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQ 316

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFE 379
           ++  L + N+LI +Y + G++     +FD+M ++DVVSWNS+I     H    +A+  FE
Sbjct: 317 LDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFE 376

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M   GV P +++F+++L AC+H G V+ G+ LF  M+ KY I P +EHYACMV+L GRA
Sbjct: 377 NMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRA 436

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
             + EA  +I E M FE  P VWG+LL +C +H NV + E A+  LFELEP N  N+ LL
Sbjct: 437 NRLGEAIKLI-EDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLL 495

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY  A    + + V ++L  RGL+
Sbjct: 496 ADIYAEAKLWSEAKSVMKLLEARGLQ 521



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 150/310 (48%), Gaps = 23/310 (7%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P Q TF  ++ +CA    +  G  VH   V  GF  D F+   L++MY + G I +A  V
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---- 307
           FD    + +  +N++       G   E  D++  M   G   D    + +L    +    
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 308 ---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              LR G ++H  +LR G E ++ +  +L+ VY+K G +  A  +F  MP K+ VSW+++
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 365 IHAHSKDH---EALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           I   +K+    +AL  F+ M  E    +P+ +T V++L ACA L +++ G+ +   ++ +
Sbjct: 256 IACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRR 315

Query: 420 Y--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
               I P +     ++ +YGR G +      + + M+ +   V W +L+    +HG    
Sbjct: 316 QLDSILPVLN---ALITMYGRCGEVLMG-QRVFDNMK-KRDVVSWNSLISIYGMHG---F 367

Query: 478 GETAAQKLFE 487
           G+ A Q +FE
Sbjct: 368 GKKAIQ-IFE 376


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 261/448 (58%), Gaps = 11/448 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            G+ V+ + + S+L  C    A+  G ++H  +          + ++L+ LY     + +
Sbjct: 4   QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD 63

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +V D+M  R   +  W ++ISGY++ G   +A+ L+ +M   G  P++FTF  VL +C
Sbjct: 64  ARRVLDEMPERNVVS--WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSC 121

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                 ++G ++H   ++  F    FV ++L+DMYAK G I +AR VFD +  +D++S  
Sbjct: 122 TSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCT 181

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRR 321
           ++++GY   GL  EA D+FR +   G   + V  +S+L   S L     G QVH  VLR 
Sbjct: 182 AIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRA 241

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
            + + + + NSLI +YSK G L  +  +FD MP++ V+SWN+++  +SK     EA+  F
Sbjct: 242 KLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELF 301

Query: 379 EQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV-EKYGISPRVEHYACMVNLY 436
           + M E + V PD +TF+++LS C+H G    G  +F  MV +K G  P +EHY C+V+L+
Sbjct: 302 KLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLF 361

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++EA+  I +KM FE +  +WG+LL AC +H NV +GE  A++L E+E +N  N+
Sbjct: 362 GRAGRVEEAFEFI-KKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  +Y +AGR DDV  V  ++ ++ +
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAV 448



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 60/456 (13%)

Query: 1   MVTILY-PPSSFHTSLVIIHCGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLT 59
           M+   Y PP    T L++++  +K +     RR   +   RN +         S T +++
Sbjct: 36  MIKTCYEPPVYLRTRLIVLY--NKCRCLGDARRVLDEMPERNVV---------SWTAMIS 84

Query: 60  --NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLI 117
             +Q+ +     +AL   ++ L S    G      TFA++L +C      + G ++H L+
Sbjct: 85  GYSQRGYAS---EALHLFVEMLMS----GTAPNEFTFATVLTSCTSSSGFQLGRQIHSLV 137

Query: 118 PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177
                  +  + S LL +YA  G I EA +VFD +  R   +    ++ISGYA+LG  E+
Sbjct: 138 IKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC--TAIISGYAQLGLDEE 195

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           A+ L+ +++ EG+  +  T+  VL A +GL  +  G +VH   +R    F   + N+L+D
Sbjct: 196 ALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLID 255

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPV 296
           MY+KCG +  +R +FD +  + +IS+N+ML GY  HGL  EA ++F+ M   N   PD V
Sbjct: 256 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSV 315

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
              ++L+  S        HG +  RG+E    + N       KDG             + 
Sbjct: 316 TFLAVLSGCS--------HGGMEDRGLEIFYEMVN------QKDGF------------EP 349

Query: 357 DVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE----RL 412
           ++  +  ++    +       FE +++    P    + SLL AC    +V +GE    RL
Sbjct: 350 EIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRL 409

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
             +  E  G      +Y  + NLY  AG  D+  ++
Sbjct: 410 LEIESENAG------NYVILSNLYASAGRWDDVRTV 439


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 257/439 (58%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C +   ++   +LH     + L+ N+ +++  +  Y   G +  + +VFD M
Sbjct: 309 TILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM 368

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +T  +  WN+L+ GYA+  +   A+ LY QM + G++PD FT   +L AC+ +  +  
Sbjct: 369 DTKTVSS--WNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHY 426

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H  A+R G   D F+  +L+ +Y  CG    A+ +FD + ++ L+S+N M+ GY  
Sbjct: 427 GEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQ 486

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL  EA ++FR M+ +G  P  +AI  +    +  S LR+G ++H + L+  +  D+ +
Sbjct: 487 NGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFV 546

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
           ++S+I +Y+K G +  +  +FD + +KDV SWN II     H +  EAL  FE+M R G+
Sbjct: 547 SSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGL 606

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  TF  +L AC+H G V+ G   F+ M+  + I P++EHY C+V++ GRAG ID+A 
Sbjct: 607 KPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDAL 666

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I E+M  +    +W +LL +C +HGN+ +GE  A KL ELEP+   N+ L+  ++  +
Sbjct: 667 RLI-EEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGS 725

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+ DDV RV   + D GL+
Sbjct: 726 GKWDDVRRVRGRMKDIGLQ 744



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 178/316 (56%), Gaps = 14/316 (4%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI-SSKLLRLYATFGLIDEAHQVFDQMSNR 155
           LL+ C Q K +E G +LH ++  +    N  + +++++ +Y+  G   ++  VFD++  R
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL--R 61

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
               F WN+++S Y     +EDA++++ ++      +PD FT P V+KACAGL  + +G+
Sbjct: 62  RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQ 121

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            +H  A +     D FV NAL+ MY KCG + +A  VF+ +  ++L+S+NS++ G+  +G
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 275 LLVEAFDIFRGMILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            L E+F+ FR M++    F PD   + ++L   A    +  G  VHG  ++ G+  +L +
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMV 241

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF-----EQMERD 384
            NSLI +YSK   L +A  LFD   +K++VSWNS+I  ++++ +    F      Q E  
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA 301

Query: 385 GVLPDHLTFVSLLSAC 400
            +  D  T +++L  C
Sbjct: 302 KMKADEFTILNVLPVC 317



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 233/509 (45%), Gaps = 58/509 (11%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           ++  F +    A   ++   ES V +       T  ++L  C   + +E G+ +H L   
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPD-----VATLVTVLPVCAGEEDIEKGMAVHGLAVK 232

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
             L +   +++ L+ +Y+    + EA  +FD+   +   +  WNS+I GYA     ED  
Sbjct: 233 LGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS--WNSMIGGYAR---EEDVC 287

Query: 180 ALYF-----QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
             ++     Q E+  ++ D+FT   VL  C     ++  +++H  + R G   +  V NA
Sbjct: 288 RTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANA 347

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
            +  Y +CG +  +  VFD +  K + S+N++L GY  +    +A D++  M  +G DPD
Sbjct: 348 FIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 407

Query: 295 PVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
              I S+L   S ++    G ++HG+ LR G+  D  I  SL+ +Y   GK   A  LFD
Sbjct: 408 WFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFD 467

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  + +VSWN +I  +S++    EA+  F QM  DG+ P  +  + +  AC+ L ++++
Sbjct: 468 GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRL 527

Query: 409 GERLF---------------SVMVEKY------GISPR---------VEHYACMVNLYGR 438
           G+ L                S +++ Y      G+S R         V  +  ++  YG 
Sbjct: 528 GKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGI 587

Query: 439 AGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFEL---EPDNE 493
            G   EA  +  + +     P    +  +L AC   G V  G     ++  L   EP  E
Sbjct: 588 HGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLE 647

Query: 494 HNFELLIKIYGNAGRLDDVER-VERMLVD 521
           H +  ++ + G AGR+DD  R +E M  D
Sbjct: 648 H-YTCVVDMLGRAGRIDDALRLIEEMPGD 675



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 171/330 (51%), Gaps = 12/330 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   +++ C  L  +  G  +H +     L  +  + + L+ +Y   GL++EA +VF+ M
Sbjct: 103 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHM 162

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGLI 210
             R   +  WNS+I G++E G  +++   + +M   EE   PD  T   VL  CAG   I
Sbjct: 163 PERNLVS--WNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDI 220

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G  VH  AV+ G   +  V N+L+DMY+KC  + +A+ +FD+   K+++S+NSM+ GY
Sbjct: 221 EKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGY 280

Query: 271 IHHGLLVEAFDIFRGMILNG--FDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEW 325
                +   F + + M         D   I ++L      S L+   ++HG+  R G++ 
Sbjct: 281 AREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQS 340

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQME 382
           +  +AN+ I  Y++ G L  +  +FD M  K V SWN+++  ++++ +   AL  + QM 
Sbjct: 341 NELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMT 400

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
             G+ PD  T  SLL AC+ + S+  GE +
Sbjct: 401 DSGLDPDWFTIGSLLLACSRMKSLHYGEEI 430



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 196/384 (51%), Gaps = 38/384 (9%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q + P+   +ALD  +Q  +S    G+     T  SLL  C ++K++ +G ++H     N
Sbjct: 385 QNSDPR---KALDLYLQMTDS----GLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN 437

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
            L  +  I   LL LY   G    A  +FD M +R+  +  WN +I+GY++ G  ++AI 
Sbjct: 438 GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS--WNVMIAGYSQNGLPDEAIN 495

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           L+ QM  +G++P +     V  AC+ L  +R+G+++H  A++     D FV ++++DMYA
Sbjct: 496 LFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYA 555

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           K G I  ++ +FDR+  KD+ S+N ++ GY  HG   EA ++F  M+  G  PD    + 
Sbjct: 556 KGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTG 615

Query: 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
           IL   S        H  ++  G+E+     N ++ +++ + KL+    + D + +   + 
Sbjct: 616 ILMACS--------HAGLVEDGLEY----FNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 663

Query: 361 WNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
                       +AL   E+M  D   PD   + SLLS+C   G++ +GE++ + ++E  
Sbjct: 664 ------------DALRLIEEMPGD---PDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 708

Query: 421 GISPRVEHYACMVNLYGRAGLIDE 444
              P  E+Y  + NL+  +G  D+
Sbjct: 709 PEKP--ENYVLISNLFAGSGKWDD 730



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 157/297 (52%), Gaps = 15/297 (5%)

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVLNA-LVDMYAKCGDIVKARTVFDRIGN 257
           +L+AC     I VG ++H + V     F + FVLN  ++ MY+ CG    +R VFD++  
Sbjct: 4   LLQACGQRKDIEVGRRLH-EMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL-ANASLLRIGAQ-- 313
           K+L  +N++++ Y  + L  +A  IF  +I +    PD   +  ++ A A LL +G    
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           +HG   +  +  D+ + N+LI +Y K G +++A  +F+HMP++++VSWNSII   S++  
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 372 -HEALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
             E+   F +M    +  +PD  T V++L  CA    ++ G  +  + V K G++  +  
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAV-KLGLNEELMV 241

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
              ++++Y +   + EA  ++ +K + + + V W +++       +VC      QK+
Sbjct: 242 NNSLIDMYSKCRFLSEA-QLLFDKND-KKNIVSWNSMIGGYAREEDVCRTFYLLQKM 296


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 251/437 (57%), Gaps = 9/437 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S+L      + V +G ++H +   N L     + + L+ +YA  G +D+A Q F+  S
Sbjct: 212 FTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSS 271

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           ++ +    W+++I+GYA+ G+ + A+ L+  M   G+ P +FTF  V+ AC+ LG    G
Sbjct: 272 DKNSIT--WSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG 329

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           ++VH   ++ GF    +V+ ALVDMYAKC  IV AR  FD +   D++ + SM+ GY+ +
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQN 389

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIA 330
           G   +A  ++  M + G  P+ + ++S+L   S    L  G Q+H   ++ G   ++ I 
Sbjct: 390 GENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIG 449

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           ++L  +Y+K G L     +F  MP +DV+SWN++I   S++    EAL  FE+M+ +G  
Sbjct: 450 SALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTK 509

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PD++TFV++LSAC+H+G V+ G   F +M +++G+ PRVEHYACMV++  RAG + EA  
Sbjct: 510 PDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIE 569

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
              E    +    +W  +L AC  + N  +G  A +KL EL       + LL  IY   G
Sbjct: 570 -FTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALG 628

Query: 508 RLDDVERVERMLVDRGL 524
           R +DVERV RM+  RG+
Sbjct: 629 RWEDVERVRRMMKLRGV 645



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 215/440 (48%), Gaps = 47/440 (10%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S L+ +Y   GL  EA +VFD M  R + +  W ++ISGYA      +A+ L+  M  
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVS--WATMISGYASQKLAAEALGLFRLMRR 202

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           E    ++F F  VL A     L+  G+++H  AV+ G      V NALV MYAKCG +  
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDD 262

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A   F+   +K+ I++++M+TGY   G   +A  +F  M L+G  P       ++   S 
Sbjct: 263 ALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSD 322

Query: 308 LRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L     G QVH ++L+ G E  + +  +L+ +Y+K   +  A   FD++ + D+V W S+
Sbjct: 323 LGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSM 382

Query: 365 IHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++ E   AL  + +ME +G+LP+ LT  S+L AC+ L +++ G+++ +  V KYG
Sbjct: 383 IGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTV-KYG 441

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAY---------------SMI---------------VE 451
               V   + +  +Y + G + +                 +MI                E
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501

Query: 452 KMEFEASP---VVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGN 505
           +M+ E +    V +  +L AC   G V  G    + +F+   ++P  EH +  ++ I   
Sbjct: 502 EMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEH-YACMVDILSR 560

Query: 506 AGRLDD-VERVERMLVDRGL 524
           AG+L + +E  E   +D G+
Sbjct: 561 AGKLKEAIEFTESATIDHGM 580



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 188/363 (51%), Gaps = 19/363 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISSKLLRLYATFGLIDEAHQVFD 150
           F +LL+  +  ++++ G  LH      +++ +     I++ L+ LYA    + EA  VF+
Sbjct: 10  FTALLQYTHN-RSLQKGKALH----AQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFE 64

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDA--IALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           ++ N+   +  WN +I+GY++ G    +  + L+ +M  E   P+  TF  V  A + L 
Sbjct: 65  RIQNKDVVS--WNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLV 122

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               G   H  A++     D FV ++L++MY K G   +AR VFD +  ++ +S+ +M++
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEW 325
           GY    L  EA  +FR M       +    +S+L+  +L  +   G Q+H   ++ G+  
Sbjct: 183 GYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLS 242

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQME 382
            + + N+L+ +Y+K G LD A   F+    K+ ++W+++I  +A S D + AL  F  M 
Sbjct: 243 IVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMH 302

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ P   TFV +++AC+ LG+   G+++   ++ K G   ++     +V++Y +   I
Sbjct: 303 LSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLL-KLGFESQIYVMTALVDMYAKCSSI 361

Query: 443 DEA 445
            +A
Sbjct: 362 VDA 364



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 139/268 (51%), Gaps = 10/268 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI     TF  ++  C  L A   G ++H  +          + + L+ +YA    I +
Sbjct: 304 SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVD 363

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A + FD +         W S+I GY + GE EDA++LY +ME EG+ P++ T   VLKAC
Sbjct: 364 ARKGFDYLQEPDIVL--WTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKAC 421

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + L  +  G+++H   V++GFG +  + +AL  MYAKCG +     VF R+  +D+IS+N
Sbjct: 422 SSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWN 481

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR--- 321
           +M++G   +G   EA ++F  M L G  PD V   +IL+  S   +G    GW   R   
Sbjct: 482 AMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS--HMGLVERGWGYFRMMF 539

Query: 322 ---GVEWDLCIANSLIVVYSKDGKLDQA 346
              G++  +     ++ + S+ GKL +A
Sbjct: 540 DEFGMDPRVEHYACMVDILSRAGKLKEA 567


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 264/460 (57%), Gaps = 17/460 (3%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I+   S  + G++  + TF  +L+ C ++   E G+K+H L+       +  +   L+ L
Sbjct: 93  IEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINL 152

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G ID A +VFD + ++  FA  W + ISGY  +G+  +AI ++ ++ E G+ PD F
Sbjct: 153 YTKCGFIDNAFKVFDDIPDKN-FA-SWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSF 210

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           +   VL AC   G +R GE +       G   + FV  ALVD Y KCG++ +AR+VFD +
Sbjct: 211 SLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGM 270

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-QV 314
             K+++S++SM+ GY  +GL  EA D+F  M+  G  PD  A+  +L + +  R+GA ++
Sbjct: 271 LEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCA--RLGALEL 328

Query: 315 HGWV--LRRGVEW--DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII----- 365
             W   L  G E+  +  +  +LI +Y+K G++D+A  +F  M +KD V WN+ I     
Sbjct: 329 GDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAM 388

Query: 366 HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
             H KD  AL  F QME+ G+ PD  TFV LL AC H G V+ G R F+ M   + ++P 
Sbjct: 389 SGHVKD--ALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPE 446

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +EHY CMV+L GRAG +DEA+ +I + M  EA+ +VWGALL  C LH +  + E   +KL
Sbjct: 447 IEHYGCMVDLLGRAGCLDEAHQLI-KSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKL 505

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             LEP +  N+ LL  IY  + + ++  ++  ++ +RG++
Sbjct: 506 IALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVK 545



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 211/393 (53%), Gaps = 14/393 (3%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           +K+LR    FG  + + ++ DQ      F F  N++I G      ++++I +Y  M +EG
Sbjct: 46  NKVLRFSFNFGNTNYSFRILDQTKEPNIFLF--NTMIRGLVLNDCFQESIEIYHSMRKEG 103

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           + PD FTFP VLKACA +    +G K+H   V+ G   D FV  +L+++Y KCG I  A 
Sbjct: 104 LSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAF 163

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL-- 307
            VFD I +K+  S+ + ++GY+  G   EA D+FR ++  G  PD  ++  +L+      
Sbjct: 164 KVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTG 223

Query: 308 -LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            LR G  +  ++   G+  ++ +A +L+  Y K G +++A  +FD M +K++VSW+S+I 
Sbjct: 224 DLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQ 283

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            ++ +    EAL  F +M  +G+ PD    V +L +CA LG++++G+   +++     + 
Sbjct: 284 GYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLD 343

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV--CMGETA 481
             V   A ++++Y + G +D A+   V +   +   VVW A +    + G+V   +G   
Sbjct: 344 NSVLGTA-LIDMYAKCGRMDRAWE--VFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
             +   ++PD  + F  L+    +AG +++  R
Sbjct: 401 QMEKSGIKPD-RNTFVGLLCACTHAGLVEEGRR 432



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 9/267 (3%)

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   ++  + +H   +R G   D ++LN ++      G+   +  + D+    ++  +N+
Sbjct: 19  GFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNT 78

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLL--RIGAQVHGWVLRRG 322
           M+ G + +    E+ +I+  M   G  PD      +L A A +L   +G ++H  V++ G
Sbjct: 79  MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAG 138

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFE 379
            E D  +  SLI +Y+K G +D A  +FD +P K+  SW + I  +    K  EA+  F 
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFR 198

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           ++   G+ PD  + V +LSAC   G ++ GE +   + E  G+   V     +V+ YG+ 
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITEN-GMVRNVFVATALVDFYGKC 257

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALL 466
           G ++ A S + + M  E + V W +++
Sbjct: 258 GNMERARS-VFDGM-LEKNIVSWSSMI 282


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 271/489 (55%), Gaps = 19/489 (3%)

Query: 46  FSSYPKSSPTPL----LTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETC 101
           F++YP  S   +    L NQ +      QAL +    + ++   GI     TF+++L  C
Sbjct: 155 FNTYPHPSTNVVTWTTLINQLSRSNKPFQAL-TFFNRMRTT---GIYPNHFTFSAILPAC 210

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
                +  G ++H LI  +    +  +++ LL +YA  G +  A  VFD+M +R   +  
Sbjct: 211 AHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVS-- 268

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WNS+I G+ +   Y  AI ++ ++   G  PDQ +   VL ACAGL  +  G++VH   V
Sbjct: 269 WNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIV 326

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G     +V N+LVDMY KCG    A  +F   G++D++++N M+ G        +A  
Sbjct: 327 KRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACT 386

Query: 282 IFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
            F+ MI  G +PD  + SS+  A+AS+  L  G  +H  VL+ G   +  I++SL+ +Y 
Sbjct: 387 YFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYG 446

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G +  A  +F    + +VV W ++I   H H   +EA+  FE+M  +GV+P+++TFVS
Sbjct: 447 KCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVS 506

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +LSAC+H G +  G + F+ M   + I P +EHYACMV+L GR G ++EA   I E M F
Sbjct: 507 VLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFI-ESMPF 565

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           E   +VWGALL AC  H NV MG   A++LF+LEPDN  N+ LL  IY   G L++ + V
Sbjct: 566 EPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEV 625

Query: 516 ERMLVDRGL 524
            R++   G+
Sbjct: 626 RRLMGINGV 634



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 248/477 (51%), Gaps = 37/477 (7%)

Query: 60  NQKAFPKTKLQALDSIIQD------LESSVQNGITVQTETFAS------LLETCYQLKAV 107
           N ++ P +  + L  + ++      L +S Q+G+  +   F+S      LL    +LK++
Sbjct: 55  NARSKPNSNFEGLGPMSREVAFWLQLFTSYQSGVP-KFHQFSSVPDLKHLLNNAAKLKSL 113

Query: 108 EHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI 166
           +H  ++H +L+ TN       I++ LL LYA  G I     +F+   + +     W +LI
Sbjct: 114 KHATQIHSQLVTTNNHASLANINT-LLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLI 172

Query: 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
           +  +   +   A+  + +M   G+ P+ FTF  +L ACA   L+  G+++H    +  F 
Sbjct: 173 NQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFL 232

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            D FV  AL+DMYAKCG ++ A  VFD + +++L+S+NSM+ G++ + L   A  +FR +
Sbjct: 233 NDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV 292

Query: 287 ILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
           +  G  PD V+ISS+L A A L+ +  G QVHG +++RG+   + + NSL+ +Y K G  
Sbjct: 293 LSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLF 350

Query: 344 DQACWLFDHMPQKDVVSWNSIIHA--HSKDHE-ALIYFEQMERDGVLPDHLTFVSLLSAC 400
           + A  LF     +DVV+WN +I      ++ E A  YF+ M R+GV PD  ++ SL  A 
Sbjct: 351 EDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHAS 410

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           A + ++  G  + S  V K G        + +V +YG+ G + +AY +  E  E     V
Sbjct: 411 ASIAALTQGTMIHS-HVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNV--V 467

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEH------NFELLIKIYGNAGRLDD 511
            W A++   + HG  C  E  A KLFE E  NE        F  ++    + G++DD
Sbjct: 468 CWTAMITVFHQHG--CANE--AIKLFE-EMLNEGVVPEYITFVSVLSACSHTGKIDD 519


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 256/451 (56%), Gaps = 11/451 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI     T  S+L  C  LK +E G ++H L+    L ++  + + LL +YA  G +
Sbjct: 216 IGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNM 275

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  +F +M  R   +  W ++++GY   G+   A+ L   M+ E V+P+  T   VL 
Sbjct: 276 DEAQMIFYEMDKRDVVS--WTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLS 333

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  ++ G  +H  A+R     +  V  AL+DMYAKC ++  +  VF +   +    
Sbjct: 334 ACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAP 393

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVL 319
           +N++++G IH+GL  +A ++F+ M++   DP+   ++S+L   + L   +    +HG+++
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD--VVSWNSIIHA---HSKDHEA 374
           R G    + +A  LI +YSK G L+ A  +F+ +P+KD  +++W++II     H     A
Sbjct: 454 RSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETA 513

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  F+QM + GV P+ +TF S+L AC+H G V  G  LF  M+E   +S R +HY C+++
Sbjct: 514 ISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVID 573

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAG ++EAY +I   M F  +  VWGALL +C +H NV +GE AA+ LFELEP N  
Sbjct: 574 LLGRAGRLEEAYELI-RTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTG 632

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           N+ LL  IY   GR  D E V  M+ + GL 
Sbjct: 633 NYVLLANIYSAVGRWRDAEHVRLMMNNIGLR 663



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 226/446 (50%), Gaps = 18/446 (4%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRK--NKGISSKLLRLYATFGLIDEAHQ 147
           T  + SLL+ C   K++ +  ++H   I   LL    +  + S L   YA FG    A +
Sbjct: 18  TARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARK 77

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAG 206
           +FD++ N + F+  WN++I  Y   G   DA+ L+ QM   G   PD +T+P V+KAC  
Sbjct: 78  LFDELRNPSLFS--WNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGD 135

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
             L  +G  +H   V  GF  D FV N+L+ MY  CG++  AR VFD +  + L+S+N+M
Sbjct: 136 YLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTM 195

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGV 323
           + GY  +G + EA  +F  MI  G +PD   + S+L   S L+   +G +VH  V  + +
Sbjct: 196 INGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNL 255

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQ 380
             D+ + NSL+ +Y+K G +D+A  +F  M ++DVVSW ++++ +        AL+  + 
Sbjct: 256 GEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQM 315

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M+ + V P+ +T  S+LSACA L S+K G  L    + +   S  +   A ++++Y +  
Sbjct: 316 MQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETA-LIDMYAKCN 374

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG--ETAAQKLFELEPDNEHNFEL 498
            ++ ++ +  +  +   +P  W A++  C +H  +     E   Q L E    N+     
Sbjct: 375 NVNLSFRVFSKTSKQRTAP--WNAIISGC-IHNGLSRKAIELFKQMLMEAVDPNDATLNS 431

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  Y     L     +   L+  G 
Sbjct: 432 LLPAYAFLTDLQQARNMHGYLIRSGF 457


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/499 (33%), Positives = 265/499 (53%), Gaps = 47/499 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           + L+   +  E  +Q GI+    TF SLL +C   +A+  G ++H  I    L  +  ++
Sbjct: 259 RKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVA 318

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL--YFQ--- 184
           + L+ +Y     I +A + FD+MS R   +  W+++I+GYA+ G Y+D  +L   FQ   
Sbjct: 319 NALITMYCKCNCIQDARETFDRMSKRDVIS--WSAMIAGYAQSG-YQDKESLDEVFQLLE 375

Query: 185 -MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M  EGV P++ TF  +LKAC+  G +  G ++H +  + GF  D  +  A+ +MYAKCG
Sbjct: 376 RMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCG 435

Query: 244 DIVKARTVFDRIGNKDLI-------------------------------SYNSMLTGYIH 272
            I +A  VF ++ NK+++                               S+N M+ GY  
Sbjct: 436 SIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQ 495

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCI 329
            G + + F++   M + GF PD V I SIL      S L  G  VH   ++ G+E D  +
Sbjct: 496 SGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVV 555

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
           A SLI +YSK G++ +A  +FD +  +D V+WN+++     H    EA+  F++M ++ V
Sbjct: 556 ATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERV 615

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF +++SAC   G V+ G  +F +M E + + P  +HY CMV+L GRAG + EA 
Sbjct: 616 PPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAE 675

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I ++M  E    VW ALL AC  H NV + E AA  +  LEP N   +  L  IY  A
Sbjct: 676 EFI-QRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQA 734

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR DD  +V +++ D+GL+
Sbjct: 735 GRWDDSTKVRKVMDDKGLK 753



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 241/470 (51%), Gaps = 24/470 (5%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           K   L   IQ L    Q G+ V + T+  ++E C +L+  E G  +H+ +    L  +  
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+  Y+ FG +    QVF +M+ R      W+S+I+ YA       A   + +M++
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVT--WSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             +EP++ TF  +LKAC    ++    ++H      G   D  V  AL+ MY+KCG+I  
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A  +F ++  ++++S+ +++     H  L EAF+++  M+  G  P+ V   S+L + + 
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 308 ---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L  G ++H  +  RG+E D+ +AN+LI +Y K   +  A   FD M ++DV+SW+++
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 365 IHAHS----KDHEAL----IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           I  ++    +D E+L       E+M R+GV P+ +TF+S+L AC+  G+++ G R     
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG-RQIHAE 411

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           + K G          + N+Y + G I EA   +  KME   + V W +LL   Y+    C
Sbjct: 412 ISKVGFESDRSLQTAIFNMYAKCGSIYEA-EQVFSKME-NKNVVAWASLL-TMYIK---C 465

Query: 477 MGETAAQKLF-ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              T+A+K+F E+   N  ++ L+I  Y  +G   D+ +V  +L    +E
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSG---DIAKVFELLSSMKVE 512


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 256/451 (56%), Gaps = 11/451 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI     T  S+L  C  LK +E G ++H L+    L ++  + + LL +YA  G +
Sbjct: 216 IGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNM 275

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  +F +M  R   +  W ++++GY   G+   A+ L   M+ E V+P+  T   VL 
Sbjct: 276 DEAQMIFYEMDKRDVVS--WTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLS 333

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  ++ G  +H  A+R     +  V  AL+DMYAKC ++  +  VF +   +    
Sbjct: 334 ACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAP 393

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVL 319
           +N++++G IH+GL  +A ++F+ M++   DP+   ++S+L   + L   +    +HG+++
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD--VVSWNSIIHA---HSKDHEA 374
           R G    + +A  LI +YSK G L+ A  +F+ +P+KD  +++W++II     H     A
Sbjct: 454 RSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETA 513

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  F+QM + GV P+ +TF S+L AC+H G V  G  LF  M+E   +S R +HY C+++
Sbjct: 514 ISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVID 573

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAG ++EAY +I   M F  +  VWGALL +C +H NV +GE AA+ LFELEP N  
Sbjct: 574 LLGRAGRLEEAYELI-RTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTG 632

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           N+ LL  IY   GR  D E V  M+ + GL 
Sbjct: 633 NYVLLANIYSAVGRWRDAEHVRLMMNNIGLR 663



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 225/446 (50%), Gaps = 18/446 (4%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRK--NKGISSKLLRLYATFGLIDEAHQ 147
           T  + SLL+ C   K++ +  ++H   I   LL    +  + S L   YA  G    A +
Sbjct: 18  TARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARK 77

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAG 206
           +FD++ N + F+  WN++I  Y   G   DA+ L+ QM   G   PD +T+P V+KAC  
Sbjct: 78  LFDELRNPSLFS--WNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGD 135

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
             L  +G  +H   V  GF  D FV N+L+ MY  CG++  AR VFD +  + L+S+N+M
Sbjct: 136 YLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTM 195

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGV 323
           + GY  +G + EA  +F  MI  G +PD   + S+L   S L+   +G +VH  V  + +
Sbjct: 196 INGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNL 255

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQ 380
             D+ + NSL+ +Y+K G +D+A  +F  M ++DVVSW ++++ +        AL+  + 
Sbjct: 256 GEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQM 315

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M+ + V P+ +T  S+LSACA L S+K G  L    + +   S  +   A ++++Y +  
Sbjct: 316 MQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETA-LIDMYAKCN 374

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG--ETAAQKLFELEPDNEHNFEL 498
            ++ ++ +  +  +   +P  W A++  C +H  +     E   Q L E    N+     
Sbjct: 375 NVNLSFRVFSKXSKQRTAP--WNAIISGC-IHNGLSRKAIELFKQMLMEAVDPNDATLNS 431

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  Y     L     +   L+  G 
Sbjct: 432 LLPAYAFLTDLQQARNMHGYLIRSGF 457


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/442 (37%), Positives = 252/442 (57%), Gaps = 12/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            +A++L +C   +AV  G +LH  +  + L  +  ++++L+ LYA+ GL+  A ++FD+M
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIR 211
            N+    F WN LI  YA  G  E AI LY +M   G +EPD FT+P VLKACA L  + 
Sbjct: 125 PNQ-GNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLG 183

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G +VH   +R  +  D FV   L+DMYAKCG + +A  VFD    +D + +NSM+    
Sbjct: 184 AGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACG 243

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   EA  + R M   G  P  V + S     A+A  L  G ++HG+  RRG      
Sbjct: 244 QNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDK 303

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMER 383
           +  SL+ +Y+K G +  A  LFD +  ++++SWN++I     H H+ DH   ++      
Sbjct: 304 LKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHA-DHACELFRRMRNE 362

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
             V+PDH+TFV +LSAC H G V+  + +F +MV  Y I P V+HY C+V++ G +G   
Sbjct: 363 AQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFK 422

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA S +++ M  +    +WGALL  C +H NV + E A  KL ELEP++  N+ LL  IY
Sbjct: 423 EA-SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIY 481

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
             +G+ ++  RV +++ +RGL+
Sbjct: 482 AQSGKWEEAARVRKLMTNRGLK 503


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 264/481 (54%), Gaps = 39/481 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G      TF  LL++C + K  E G ++H  +       ++   + L+ +YA  G +
Sbjct: 75  VSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRL 134

Query: 143 DEAHQVFDQMSNR---------TAFA--------------------FPWNSLISGYAELG 173
           ++A +VFD  S R         T +A                      WN++I+GY E  
Sbjct: 135 EDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENC 194

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH-LDAVRFGFGFDGFVL 232
            YE+A+ L+ +M    V PD+ T   VL ACA  G I +G ++H L     GFG    ++
Sbjct: 195 GYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIV 254

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           NA + +Y+KCGD+  A  +F+ +  KD++S+N+++ GY H  L  EA  +F+ M+ +G  
Sbjct: 255 NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 314

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQAC 347
           P+ V + S+L   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A 
Sbjct: 315 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAH 374

Query: 348 WLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +F+ M  K + SWN++I     H + + A   F +M ++G+ PD +T V LLSAC+H G
Sbjct: 375 QVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSG 434

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            + +G  +F  + + Y I+P++EHY CM++L G AGL  EA   I+  M  E   V+W +
Sbjct: 435 LLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEE-IIHMMPMEPDGVIWCS 493

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL AC +HGN+ + E+ AQKL E+EP+N  ++ LL  IY  AGR +DV R+  +L  +G+
Sbjct: 494 LLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGM 553

Query: 525 E 525
           +
Sbjct: 554 K 554



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 206/427 (48%), Gaps = 59/427 (13%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYAT---FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +++ T L   N  +S KLL L      F  +  A  VF+           WN+++ G A 
Sbjct: 4   QMVKTGLHNTNYALS-KLLELCVVSPHFDGLPYAVSVFETXQEPNLLI--WNTMLRGLAS 60

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             +    + +Y +M   G  P+ +TFP +LK+CA       G ++H   ++ G   D + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 232 LNALVDMYAK---------------------C----------GDIVKARTVFDRIGNKDL 260
             +L+ MYA+                     C          GD+  AR VFD I  +D+
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           +S+N+M+TGY+ +    EA ++F+ M+     PD   + S+L   A +  + +G ++H  
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 318 V-LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---E 373
           V    G    L I N+ I +YSK G ++ A  LF+ +  KDVVSWN++I  ++  +   E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GISPRVEHYAC 431
           AL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V ++K   G++        
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG-RWIHVYIDKRLKGVTNGSALRTS 359

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE---- 487
           ++++Y + G I+ A+ +    M    S   W A+++   +HG       AA  LF     
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSS--WNAMIFGFAMHGRA----NAAFDLFSRMRK 413

Query: 488 --LEPDN 492
             +EPD+
Sbjct: 414 NGIEPDD 420



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 43/300 (14%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            H   V+ G     + L+ L+++         +  A +VF+     +L+ +N+ML G   
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
              LV   +++  M+  G  P+      +L   A +     G Q+H  V++ G E D   
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 330 ANSLIVVYSKDGKLDQA--------------CW-----------------LFDHMPQKDV 358
             SLI +Y+++G+L+ A              C                  +FD + ++DV
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 359 VSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSWN++I  + ++    EAL  F++M R  V PD  T VS+LSACA  GS+++G  + ++
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           + + +G    ++     + LY + G ++ A S + E +  +   V W  L+   Y H N+
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIA-SGLFEGLSCK-DVVSWNTLIGG-YTHMNL 297


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 265/477 (55%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  LL++C + KA   G ++H  +       +  + + L+ +Y   G +++A
Sbjct: 98  GLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDA 157

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            +VFDQ S+R   ++                              WN++ISGYAE G  +
Sbjct: 158 RKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 217

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  V PD+ T   V+ ACA    I +G +VH      GFG +  ++NAL+
Sbjct: 218 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y KCG++  A  +F+ +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 278 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 337

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV        SLI +Y+K G ++ A  +FD
Sbjct: 338 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFD 397

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +  + + SWN++I     H + + A   F +M ++ + PD +TFV LLSAC+H G + +
Sbjct: 398 SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDL 457

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M E Y I+P++EHY CM++L G +GL  EA  MI   ME E   V+W +LL A
Sbjct: 458 GRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKA 516

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C ++ NV +GE+ AQ L ++EP N  ++ LL  IY  AGR ++V ++  +L D+G++
Sbjct: 517 CKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMK 573



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 230/459 (50%), Gaps = 53/459 (11%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISS--KLLRLYATFGLIDEAHQVFDQM 152
           SLL  C  L+++     +H ++I T L   N  +S   +   L   F  +  A  VF+ +
Sbjct: 7   SLLHNCKTLQSLR---MIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++  G+A   +   A+ LY  M   G+ P+ +TFP +LK+CA     R 
Sbjct: 64  QEPNLLI--WNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFRE 121

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++ G+  D +V  +L+ MY + G +  AR VFD+  ++D++SY +++TGY  
Sbjct: 122 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 181

Query: 273 HGLLV-------------------------------EAFDIFRGMILNGFDPDP---VAI 298
            G +                                EA ++F+ M+     PD    V++
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 241

Query: 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
            S  A ++ + +G QVH W+   G   +L I N+LI +Y K G+++ AC LF+ +  KDV
Sbjct: 242 VSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDV 301

Query: 359 VSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SWN++I  ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++++G R   V
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG-RWIHV 360

Query: 416 MVEKY--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            + K   G++    H   ++++Y + G I+ A  +    +    S   W A+++   +HG
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS--WNAMIFGFAMHG 418

Query: 474 --NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
             N      +  +  E+EPD+   F  L+    ++G LD
Sbjct: 419 RANAAFDIFSRMRKNEIEPDDI-TFVGLLSACSHSGMLD 456



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS------SKLLRLY 136
           +++G +    T  S+L  C  L A+E G  +H  I   L    KG++      + L+ +Y
Sbjct: 328 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRL----KGVANASSHRTSLIDMY 383

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G I+ A QVFD + NR+  +  WN++I G+A  G    A  ++ +M +  +EPD  T
Sbjct: 384 AKCGDIEAAQQVFDSILNRSLSS--WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDIT 441

Query: 197 FPRVLKACAGLGLIRVGEKV 216
           F  +L AC+  G++ +G  +
Sbjct: 442 FVGLLSACSHSGMLDLGRHI 461


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 266/481 (55%), Gaps = 11/481 (2%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
            F S P  +            +T L A    +Q  +   ++GI     + + +   C ++
Sbjct: 294 AFFSLPNHTVQACNAMMVGLVRTGLGA--EALQLFQFMTRSGIGFDVVSLSGVFSACAEV 351

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
           K    G+++H L   +    +  + + +L LY     + EA+ VF +M  R + +  WN+
Sbjct: 352 KGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVS--WNA 409

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I+   +   YED IA   +M   G+EPD FT+  VLKACAGL  +  G  VH  A++ G
Sbjct: 410 IIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSG 469

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
            G D FV + +VDMY KCG I +A+ + DRIG ++L+S+NS+++G+  +    EA   F 
Sbjct: 470 LGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFS 529

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M+  G  PD    +++L   AN + + +G Q+HG ++++ +  D  I+++L+ +Y+K G
Sbjct: 530 EMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG 589

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            +  +  +F+   + D VSWN++I     H +  EAL  FE+M++  V+P+H TFV++L 
Sbjct: 590 NMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLR 649

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+H+G +  G R F +M  +Y + P++EH+ACMV++ GR+    EA   I   M  EA 
Sbjct: 650 ACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFI-RSMPLEAD 708

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
            V+W  LL  C +  +V + ETAA  +  L+PD+   + LL  +Y  +G+  DV R  R+
Sbjct: 709 AVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRL 768

Query: 519 L 519
           +
Sbjct: 769 M 769



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 220/452 (48%), Gaps = 28/452 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V    +AS+  +C  +  +    +LH     N    ++ + + ++ +YA    + +A
Sbjct: 232 GLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDA 291

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F  + N T  A   N+++ G    G   +A+ L+  M   G+  D  +   V  ACA
Sbjct: 292 RRAFFSLPNHTVQA--CNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACA 349

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G +VH  A++ GF  D  V NA++D+Y KC  +V+A  VF  +  +D +S+N+
Sbjct: 350 EVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNA 409

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++     +    +       M+  G +PD     S+L   A    L  G+ VHG  ++ G
Sbjct: 410 IIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSG 469

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  ++++++ +Y K G + +A  L D +  +++VSWNSII   S   +  EA  +F 
Sbjct: 470 LGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFS 529

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYG 437
           +M   GV PDH T+ ++L  CA+L ++++G+++   ++++  +    + Y  + +V++Y 
Sbjct: 530 EMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYA 586

Query: 438 RAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD---- 491
           + G + ++  M    +K++F    V W A++    LHG        A ++FE        
Sbjct: 587 KCGNMPDSLLMFEKAQKLDF----VSWNAMICGYALHGQ----GFEALEMFERMQQANVV 638

Query: 492 -NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            N   F  +++   + G LDD  R   ++  R
Sbjct: 639 PNHATFVAVLRACSHVGLLDDGCRYFYLMTSR 670



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 199/443 (44%), Gaps = 46/443 (10%)

Query: 91  TETFASLLETCYQL--KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           T TF+ L + C      A+  G   H  +  +       +S+ LL++YA  G    A  V
Sbjct: 2   TATFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGV 61

Query: 149 FDQMSNR---------TAFA--------------------FPWNSLISGYAELGEYEDAI 179
           FD M +R         TA+A                      WN+L+SGY + G + D++
Sbjct: 62  FDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSV 121

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
            L  +M   GV PD+ T   +LKAC GL  + +G ++H  AV+ G   D    +ALVDMY
Sbjct: 122 GLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMY 181

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
            KC  +  A   F  +G ++ +S+ + + G + +       ++F  M   G      A +
Sbjct: 182 GKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYA 241

Query: 300 SIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S+    A  + L    Q+H   ++     D  +  +++ VY+K   L  A   F  +P  
Sbjct: 242 SVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNH 301

Query: 357 DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
            V + N+++    +     EAL  F+ M R G+  D ++   + SACA +     G ++ 
Sbjct: 302 TVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVH 361

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            + + K G    V     +++LYG+   + EAY ++ ++ME +   V W A++ A  L  
Sbjct: 362 CLAI-KSGFDVDVCVRNAILDLYGKCKALVEAY-LVFQEME-QRDSVSWNAIIAA--LEQ 416

Query: 474 NVCMGETAA----QKLFELEPDN 492
           N C  +T A       + +EPD+
Sbjct: 417 NECYEDTIAYLNEMLRYGMEPDD 439


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 156/446 (34%), Positives = 253/446 (56%), Gaps = 10/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   T  S+L  C  +  +  G  LH         +    S+ LL +Y+  G ++ A
Sbjct: 291 GVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF +M + T  +  W S+I+ Y   G Y DAI L+ +M+ +GV PD +T   ++ ACA
Sbjct: 351 TEVFVKMGDTTIVS--WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA 408

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G  VH   ++ G G +  V NAL++MYAKCG + +AR VF +I  KD++S+N+
Sbjct: 409 CSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNT 468

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+ GY  + L  EA ++F  M    F PD + ++ +L   A  + L  G ++HG +LRRG
Sbjct: 469 MIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRG 527

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              DL +A +L+ +Y+K G L  A  LFD +P+KD++SW  +I     H   +EA+  F 
Sbjct: 528 YFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN 587

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD  +F ++L+AC+H G +  G + F+ M  + G+ P++EHYAC+V+L  R 
Sbjct: 588 EMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARM 647

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  I E M  +    +WG LL  C +H +V + E  A+ +FELEPDN   + +L
Sbjct: 648 GNLSKAYKFI-ESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVL 706

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y  A + ++V+++ + +  RG +
Sbjct: 707 ANVYAEAEKWEEVKKLRKRMQKRGFK 732



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 208/359 (57%), Gaps = 9/359 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++ S+L+ C + K++E G ++H +I +N +  ++ + +KL+ +Y   G + +  ++FD++
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N   F   WN L+S YA++G + ++++L+ +M++ GV  + +TF  VLK  A LG ++ 
Sbjct: 156 MNDKVFL--WNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 213

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH   ++ GFG +  V+N+L+  Y K G +  A  +FD +   D++S+NSM+ G + 
Sbjct: 214 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G      +IF  M++ G + D   + S+L   AN   L +G  +HG+ ++     ++  
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
           +N+L+ +YSK G L+ A  +F  M    +VSW SII A+ ++    +A+  F++M+  GV
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            PD  T  S++ ACA   S+  G  + S ++ K G+   +     ++N+Y + G ++EA
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVI-KNGMGSNLPVTNALINMYAKCGSVEEA 451



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 229/439 (52%), Gaps = 25/439 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  +L+    L  V+   ++H  +       N  + + L+  Y  FG ++ A
Sbjct: 190 GVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESA 249

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H +FD++S     +  WNS+I+G    G   + + ++ QM   GVE D  T   VL ACA
Sbjct: 250 HNLFDELSEPDVVS--WNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACA 307

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G + +G  +H   V+  F  +    N L+DMY+KCG++  A  VF ++G+  ++S+ S
Sbjct: 308 NIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTS 367

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++  Y+  GL  +A  +F  M   G  PD   ++SI+   A +S L  G  VH +V++ G
Sbjct: 368 IIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNG 427

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           +  +L + N+LI +Y+K G +++A  +F  +P KD+VSWN++I  +S++   +EAL  F 
Sbjct: 428 MGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFL 487

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC-MVNLYGR 438
            M++    PD +T   +L ACA L ++  G  +   ++ +   S    H AC +V++Y +
Sbjct: 488 DMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAK 544

Query: 439 AGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLH--GNVCMGETAAQKLFELEPDN 492
            GL      +++ ++ F+  P    + W  ++    +H  GN  +      ++  +EPD 
Sbjct: 545 CGL------LVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD- 597

Query: 493 EHNFELLIKIYGNAGRLDD 511
           E +F  ++    ++G L++
Sbjct: 598 ESSFSAILNACSHSGLLNE 616


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 246/448 (54%), Gaps = 14/448 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++  T T   LL+ C Q  A    +++H       L  N  + + L+R YA  G I+  
Sbjct: 133 GLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAV 192

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFDQ  +    +  W +LI  Y+++G   +AIA +F+M       D+ T   VL AC+
Sbjct: 193 EKVFDQGPHWDLIS--WTTLIQAYSKMGYPSEAIAAFFRMN---CTADRMTLVVVLSACS 247

Query: 206 GLGLIRVGEKV--HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            LG   +G+K+  ++D   F    D F+ NAL+DMY KCG    AR +F  +  K+L+S+
Sbjct: 248 QLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSW 307

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NSM++G  H GL  EA  +FR M   G  PD V +  +L   AN   L +G  VH ++ +
Sbjct: 308 NSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDK 367

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIY 377
             ++ D  +AN+L+ +Y+K G +DQA  +F  M  KDV S+ ++I     H K   AL  
Sbjct: 368 NHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAI 427

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M R GV PDH+T V +LSAC+H G ++ G R F  M   Y + P+ EHY CMV+L G
Sbjct: 428 FSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLG 487

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAGLI EA +    KM       VWG+LL AC +H  V +GET  QKL E+EP+ +  + 
Sbjct: 488 RAGLISEAEA-FTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYI 546

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L+  IY +A R  D  +  + +    ++
Sbjct: 547 LMSNIYSSANRWRDALKWRKAMKQNNIK 574



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 211/480 (43%), Gaps = 67/480 (13%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I+ + +S+    T ++ T   ++  C ++              T+LL+++  ++  +  L
Sbjct: 42  IKQIHASIIKANTTRSTTTLPIISLCTKI--------------TSLLQQDVHLADSIQNL 87

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE-YEDAIALYFQMEEEGVEPDQ 194
           +    L +  HQ            + +N++I   +     +    +LY QM   G+ PD 
Sbjct: 88  WYASSLANFCHQ---------NPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDT 138

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           +T P +LKAC+         ++H  +++ G   + FV N L+  YA  G I     VFD+
Sbjct: 139 YTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQ 198

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
             + DLIS+ +++  Y   G   EA   F  M         V + S  +      +G ++
Sbjct: 199 GPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKI 258

Query: 315 HGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD- 371
             ++      V  D+ + N+L+ +Y K G+   A  LF  MP K++VSWNS+I   +   
Sbjct: 259 LAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQG 318

Query: 372 --HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EAL  F +M+  G+ PD +T V +L++CA+LG +++G+ + S  ++K  +       
Sbjct: 319 LFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSY-IDKNHMKADGYVA 377

Query: 430 ACMVNLYGRAGLIDEAY---------------SMIV------------------EKMEFE 456
             +V++Y + G ID+A+               +MIV                   +M   
Sbjct: 378 NALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVR 437

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQ---KLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
              V    +L AC   G +  G    Q   +L+ L+P  EH +  ++ + G AG + + E
Sbjct: 438 PDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEH-YGCMVDLLGRAGLISEAE 496


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 160/424 (37%), Positives = 259/424 (61%), Gaps = 15/424 (3%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G K+H L+       +  +++ L+ +Y+ FGL+ +A ++FD M  R   +  WN++ISGY
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGS--WNAMISGY 70

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            + G   +A+ +  +M  EGV+ D  T   VL  CA +G I  G+ +HL  ++ G  F+ 
Sbjct: 71  CQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFEL 130

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV NAL++MYAK G +  A+ VF  +  KD++S+N+++TGY  +GL  EA +++  +++ 
Sbjct: 131 FVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASEAIEVY--LLME 187

Query: 290 GFD---PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
             +   P+     SIL   ++   L+ G ++HG V++  +  D+ +   LI +Y K GKL
Sbjct: 188 EHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKL 247

Query: 344 DQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
           D A  LF  +P+K+ V WN++I     H    +AL  F +M+ + V PDH+TFVSLLSAC
Sbjct: 248 DDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSAC 307

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G V   +  F++M E+YGI P ++HY CMV+L+GRAG ++ A++ I +KM  +    
Sbjct: 308 SHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI-KKMPIQPDAS 366

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
            WGALL AC +HGN+ +G+ A+++LFE++ +N   + LL  IY N G+ + V+ V  +  
Sbjct: 367 AWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLAR 426

Query: 521 DRGL 524
           DRGL
Sbjct: 427 DRGL 430



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 169/365 (46%), Gaps = 51/365 (13%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +   T AS+L  C Q+  +  G  +H  +  + L     +S+ L+ +YA FG +  A
Sbjct: 90  GVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHA 149

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKAC 204
            +VF  +         WN+LI+GYA+ G   +AI +Y  MEE E + P+Q T+  +L A 
Sbjct: 150 QKVFGLLIKDVV---SWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAY 206

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + +G ++ G ++H   ++     D FV   L+DMY KCG +  A ++F ++  K+ + +N
Sbjct: 207 SHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWN 266

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           +M++ Y  HG   +A ++FR M      PD +   S+L+                     
Sbjct: 267 AMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSAC------------------- 307

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-----DVVSWNSIIHAHSKDHEALIYFE 379
                        S  G +  A W F+ M ++      +  +  ++    +  E  + F 
Sbjct: 308 -------------SHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFN 354

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVG----ERLFSVMVEKYGISPRVEHYACMVNL 435
            +++  + PD   + +LL+AC   G++++G    ERLF V  E  G      +Y  + N+
Sbjct: 355 FIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVG------YYVLLSNI 408

Query: 436 YGRAG 440
           Y   G
Sbjct: 409 YANVG 413


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 265/474 (55%), Gaps = 38/474 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+   + TF  LL++C + K    G ++H  +       +  + + L+ +Y     +
Sbjct: 56  VSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRL 115

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
           ++A++VFD+ S+R   ++                              WN++ISGYAE G
Sbjct: 116 EDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETG 175

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            Y++A+ L+ +M +  V PD+ T+  VL ACA  G I +G +VH      GF  +  ++N
Sbjct: 176 CYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVN 235

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           AL+D+Y+KCG++  A  +F  +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295

Query: 294 DPVAISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACW 348
           + V + S+L   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355

Query: 349 LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F+ M  K + SWN++I     H +   +   F +M + G+ PD +TFV LLSAC+H G 
Sbjct: 356 VFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGM 415

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +G  +F  M + Y ++P++EHY CM++L G +GL  EA  MI   ME E   V+W +L
Sbjct: 416 LDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSL 474

Query: 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           L AC +HGNV + E+ AQ L ++EP+N  ++ LL  IY +AGR +DV R+  +L
Sbjct: 475 LKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALL 528



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 202/394 (51%), Gaps = 53/394 (13%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN++I G+A   +   ++ LY  M   G+ P+ +TFP +LK+CA       G+++H   +
Sbjct: 32  WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91

Query: 222 RFGFGFDGFVLNALVDM-------------------------------YAKCGDIVKART 250
           + GF  D +V  +L+ M                               YA  GDI  A+ 
Sbjct: 92  KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQK 151

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASL 307
           +FD I  KD++S+N+M++GY   G   EA ++F  M+     PD    V + S  A++  
Sbjct: 152 LFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGS 211

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           + +G QVH WV   G + +L I N+LI +YSK G+++ AC LF  +  KDV+SWN++I  
Sbjct: 212 IELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGG 271

Query: 368 HSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GI 422
           ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V ++K   G+
Sbjct: 272 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG-RWIHVYIDKRLKGV 330

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +        ++++Y + G I+ A+ +    +    S   W A+++   +HG       A+
Sbjct: 331 TNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS--WNAMIFGFAMHGRA----DAS 384

Query: 483 QKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
             LF       +EPD+   F  L+    ++G LD
Sbjct: 385 FDLFSRMRKIGIEPDDI-TFVGLLSACSHSGMLD 417



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 38/235 (16%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A +VF+ I   + + +N+M+ G+      V +  ++  M+  G  P+      +L   A 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC----------------- 347
           +     G Q+HG VL+ G + DL +  SLI +Y ++ +L+ A                  
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 348 --------------WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
                          LFD +P KDVVSWN++I  +++     EAL  FE+M +  V PD 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            T+V++LSACAH GS+++G ++ S  V+ +G    ++    +++LY + G ++ A
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHS-WVDDHGFDSNLKIVNALIDLYSKCGEVETA 250


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 261/464 (56%), Gaps = 22/464 (4%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           +L  L+   Q        GI     T+ S+L+TC  L A + G ++H  +     + N  
Sbjct: 415 QLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVY 474

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +SS L+ +YA  G +D A ++F ++      +  W ++I+GY +  ++ +A+ L+ +M++
Sbjct: 475 VSSVLIDMYAKHGKLDHALKIFRRLKENDVVS--WTAMIAGYTQHDKFTEALNLFKEMQD 532

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           +G++ D   F   + ACAG+  +  G ++H  +   G+  D  + NALV +YA+CG + +
Sbjct: 533 QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVRE 592

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A   FD+I  KD +S+NS+++G+   G   EA +IF  M   G + +     S +   AN
Sbjct: 593 AYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAAN 652

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            + +RIG Q+HG + + G + +  ++N+LI +Y+K G +D              +SWNS+
Sbjct: 653 IANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSM 699

Query: 365 IHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  +S+     EAL  FE M++  VLP+H+TFV +LSAC+H+G V  G   F  M E + 
Sbjct: 700 ITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHN 759

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P+ EHYAC+V+L GR+GL+  A    VE+M  +   +VW  LL AC +H N+ +GE A
Sbjct: 760 LVPKPEHYACVVDLLGRSGLLSRA-KRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFA 818

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A  L ELEP +   + L+  +Y  +G+ D  +R  +M+ DRG++
Sbjct: 819 ASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVK 862



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 217/456 (47%), Gaps = 49/456 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ASLL  C  + A+ +G + H       +  +  +   LL LY     I  AH+ F   
Sbjct: 354 TVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF--- 410

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                           Y +L     +  ++ QM+ EG+ P+QFT+P +LK C  LG   +
Sbjct: 411 --------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H   ++ GF F+ +V + L+DMYAK G +  A  +F R+   D++S+ +M+ GY  
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           H    EA ++F+ M   G   D +  +S +   A    L  G Q+H      G   DL I
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSI 576

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+ +Y++ GK+ +A   FD +  KD VSWNS++   ++     EAL  F QM + G+
Sbjct: 577 GNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID--- 443
             +  TF S +SA A++ +V++G+++   M+ K G     E    ++ LY + G ID   
Sbjct: 637 EINSFTFGSAVSAAANIANVRIGKQIHG-MIRKTGYDSETEVSNALITLYAKCGTIDDIS 695

Query: 444 ---------------EAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLF 486
                          EA  +  +  + +  P  V +  +L AC   G V  G +  + + 
Sbjct: 696 WNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMS 755

Query: 487 E---LEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
           E   L P  EH +  ++ + G +G L   +R VE M
Sbjct: 756 EAHNLVPKPEH-YACVVDLLGRSGLLSRAKRFVEEM 790



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 212/459 (46%), Gaps = 56/459 (12%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q+G+   ++TF  LLE C   ++   G+KL                   +  Y  FG ++
Sbjct: 74  QHGVRANSQTFLWLLEGCLNSRSFYDGLKL-------------------IDFYLAFGDLN 114

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  VFD+M  R+     WN + + +           L+ +M  + VE D+  F  VL+ 
Sbjct: 115 CAVNVFDEMPIRSLSC--WNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 204 CAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           C+G  +  R  E++H   +  GF    F+ N L+D+Y K G +  A+ VF+ +  +D +S
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVS 232

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           + +M++G   +G   EA  +F  ++L           S          G Q+HG VL++G
Sbjct: 233 WVAMISGLSQNGYEEEAMLLFCQIVL-----------SACTKVEFFEFGKQLHGLVLKQG 281

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
              +  + N+L+ +YS+ G L  A  +F  M Q+D VS+NS+I   ++    + AL  F+
Sbjct: 282 FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFK 341

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M  D   PD +T  SLLSACA +G++  G++  S  + K G++  +     +++LY + 
Sbjct: 342 KMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAI-KAGMTSDIVVEGSLLDLYVKC 400

Query: 440 GLIDEAYSM---------------IVEKMEFEA---SPVVWGALLYACYLHGNVCMGETA 481
             I  A+                 I  +M+ E    +   + ++L  C   G   +GE  
Sbjct: 401 SDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 482 AQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERML 519
             ++ +     N +   +LI +Y   G+LD   ++ R L
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL 499



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 179/358 (50%), Gaps = 34/358 (9%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H    T+    +  I + L+ LY   G +  A +VF+ +  R + +  W ++ISG ++
Sbjct: 185 QIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVS--WVAMISGLSQ 242

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G  E+A+ L+ Q+              VL AC  +     G+++H   ++ GF  + +V
Sbjct: 243 NGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYV 288

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NALV +Y++ G++  A  +F  +  +D +SYNS+++G    G +  A  +F+ M L+  
Sbjct: 289 CNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQ 348

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD V ++S+L   A+   L  G Q H + ++ G+  D+ +  SL+ +Y K   +  A  
Sbjct: 349 KPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHE 408

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            F    Q D +            +++   F QM+ +G++P+  T+ S+L  C  LG+  +
Sbjct: 409 FFLCYGQLDNL------------NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           GE++ +  V K G    V   + ++++Y + G +D A   I  +++ E   V W A++
Sbjct: 457 GEQIHT-QVLKTGFQFNVYVSSVLIDMYAKHGKLDHALK-IFRRLK-ENDVVSWTAMI 511


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 289/548 (52%), Gaps = 41/548 (7%)

Query: 11  FHTSLVIIHCGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKL- 69
           +HT+  ++    +   ++  ++   Q +  + I T +++  S    L    K FP + L 
Sbjct: 21  YHTAECLVFLAKQCSSTKTLQQVHTQMVVNSSIHTPNNHLLSKAIHL----KNFPYSSLL 76

Query: 70  ----------QALDSIIQDLESSVQN--------------GITVQTETFASLLETCYQLK 105
                      A + +I+ L ++  N               +T    TF     +C  L 
Sbjct: 77  FSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLA 136

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           ++ H    H L+    L  +   +  L+  YA  GL+  A +VFD++ +R + +  WNS+
Sbjct: 137 SLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVS--WNSM 194

Query: 166 ISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           I+GYA+ G   +A+ ++ +M   +G EPD+ +   +L AC  LG + +G  V    V  G
Sbjct: 195 IAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERG 254

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
              + ++ +AL+ MYAKCG++  AR +FD +  +D+I++N++++GY  +G+  EA  +F 
Sbjct: 255 MTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFH 314

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           GM  +    + + ++++L   A    L +G Q+  +  +RG + D+ +A +LI +Y+K G
Sbjct: 315 GMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSG 374

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM--ERDGVLPDHLTFVSL 396
            LD A  +F  MPQK+  SWN++I A   H K  EAL  F+ M  E  G  P+ +TFV L
Sbjct: 375 SLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGL 434

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           LSAC H G V  G RLF +M   +G+ P++EHY+CMV+L  RAG + EA+ +I  KM  +
Sbjct: 435 LSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLI-RKMPEK 493

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
              V  GALL AC    NV +GE   + + E++P N  N+ +  KIY N    +D  R+ 
Sbjct: 494 PDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMR 553

Query: 517 RMLVDRGL 524
            ++  +G+
Sbjct: 554 LLMRQKGI 561


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 268/473 (56%), Gaps = 41/473 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  LL++C + K  + G ++H  +       +  + + L+ +YA  G +++A +VFD+ 
Sbjct: 77  TFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRS 136

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
           S+R   ++                              WN++ISGYAE G Y+ A+ L+ 
Sbjct: 137 SHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFK 196

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M +  V+PD+ T   V+ ACA  G I +G +VH      GFG +  ++NAL+D+Y+KCG
Sbjct: 197 EMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG 256

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
           ++  A  + + + NKD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V + SIL 
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 303 --ANASLLRIGAQVHGWVLRR----GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-Q 355
             A+   + IG  +H ++ ++     V     +  SLI +Y+K G +D A  + D     
Sbjct: 317 ACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFN 376

Query: 356 KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           + + +WN++I     H + + A   F +M ++G+ PD +TFV LLSAC+H G + +G  +
Sbjct: 377 RSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNI 436

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           F  M + Y I+P++EHY CM++L G +GL  EA  MI   M  E   V+W +LL AC +H
Sbjct: 437 FRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMPMEPDGVIWCSLLKACKIH 495

Query: 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           GN+ +GE+ A+KL ++EP+N  ++ LL  IY  AG+ ++V ++  +L D+G++
Sbjct: 496 GNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMK 548



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 202/396 (51%), Gaps = 54/396 (13%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN +  G+A   +   A+ LY  M   G+ P+ FTFP +LK+CA     + G+++H   +
Sbjct: 43  WNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVL 102

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY------------------ 263
           + GF  D +V  +L+ MYA+ G +  A+ VFDR  ++D++SY                  
Sbjct: 103 KLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQK 162

Query: 264 -------------NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
                        N+M++GY   G   +A ++F+ M+     PD   +++++   A +  
Sbjct: 163 MFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGS 222

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           + +G QVH W+   G   +L I N+LI +YSK G+++ AC L + +  KDV+SWN++I  
Sbjct: 223 IELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGG 282

Query: 368 HSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK----Y 420
           ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V ++K     
Sbjct: 283 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKKLKGV 341

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
            ++        ++++Y + G ID A   + +   F  S   W A+++   +HG       
Sbjct: 342 VVTNASSLRTSLIDMYAKCGDIDAA-PQVSDSSAFNRSLSTWNAMIFGFAMHGRA----N 396

Query: 481 AAQKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
           AA  +F       +EPD +  F  L+    ++G LD
Sbjct: 397 AAFDIFSRMRKNGIEPD-DITFVGLLSACSHSGMLD 431



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 174/370 (47%), Gaps = 42/370 (11%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  +     T A+++  C Q  ++E G ++H  I  +    N  I + L+ LY+  G +
Sbjct: 199 MKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEV 258

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A ++ + +SN+   +  WN+LI GY  +  Y++A+ L+ +M   G  P+  T   +L 
Sbjct: 259 ETACELLEGLSNKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-------NALVDMYAKCGDIVKARTVFDRI 255
           ACA LG I +G  +H   V       G V+        +L+DMYAKCGDI  A  V D  
Sbjct: 317 ACAHLGAIDIGRWIH---VYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSS 373

Query: 256 G-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
             N+ L ++N+M+ G+  HG    AFDIF  M  NG +PD +    +L+  S        
Sbjct: 374 AFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS-------- 425

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           H  +L  G      I  S+   Y+   KL+    + D +    +           K+ E 
Sbjct: 426 HSGMLDLGRN----IFRSMRQDYNITPKLEHYGCMIDLLGHSGLF----------KEAEE 471

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +I    ME DGV+     + SLL AC   G++++GE     +++    +P    Y  + N
Sbjct: 472 MINTMPMEPDGVI-----WCSLLKACKIHGNLELGESFAKKLIKIEPENPG--SYVLLSN 524

Query: 435 LYGRAGLIDE 444
           +Y  AG  +E
Sbjct: 525 IYATAGKWNE 534


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 250/445 (56%), Gaps = 10/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  S++  C     +  G  LH         K   +++ LL +Y+  G ++ A
Sbjct: 246 GINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSA 305

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            QVF+ M  R+  +  W S+I+GYA  G  + ++ L+ +ME+EG+ PD FT   +L ACA
Sbjct: 306 IQVFETMGERSVVS--WTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACA 363

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             GL+  G+ VH          D FV NAL+DMYAKCG +  A +VF  +  KD++S+N+
Sbjct: 364 CTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNT 423

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
           M+ GY  + L  EA ++F  M  N   P+ + ++ IL A ASL  L  G ++HG +LR G
Sbjct: 424 MIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNG 482

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+L+ +Y K G L  A  LFD +P+KD+VSW  +I     H    EA+  F 
Sbjct: 483 FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFN 542

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD ++F+S+L AC+H G +  G   F++M     I P+ EHYAC+V+L  RA
Sbjct: 543 EMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARA 602

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  I + M  E    +WGALL  C ++ +V + E  A+ +FELEP+N   + LL
Sbjct: 603 GNLSKAYKFI-KMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLL 661

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A + ++V+++   +  RGL
Sbjct: 662 ANIYAEAEKWEEVKKLRERIGRRGL 686



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 232/484 (47%), Gaps = 72/484 (14%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++  T+ S+L+ C  LK+++ G ++H +I +N +  +  + SKL+ +Y T G + E  ++
Sbjct: 99  LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRI 158

Query: 149 FDQMSNRTAF-----------------------------------------------AFP 161
           FD+++N   F                                                  
Sbjct: 159 FDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVIS 218

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WNS+ISGY   G  E  + L+ QM   G+  D  T   V+  C+  G++ +G  +H  A+
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAI 278

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  FG +  + N L+DMY+K G++  A  VF+ +G + ++S+ SM+ GY   GL   +  
Sbjct: 279 KASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVR 338

Query: 282 IFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +F  M   G  PD   I++IL   A   LL  G  VH ++    ++ DL ++N+L+ +Y+
Sbjct: 339 LFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYA 398

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVS 395
           K G +  A  +F  M  KD+VSWN++I  +SK+   +EAL  F +M+ +   P+ +T   
Sbjct: 399 KCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMAC 457

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY---GRAGLIDEAYSMIVEK 452
           +L ACA L +++ G+ +   ++ + G S        +V++Y   G  GL    + MI EK
Sbjct: 458 ILPACASLAALERGQEIHGHIL-RNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 516

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIKIYGNAG 507
                  V W  ++    +HG    G  A     E+     EPD E +F  ++    ++G
Sbjct: 517 -----DLVSWTVMIAGYGMHG---YGSEAIAAFNEMRNSGIEPD-EVSFISILYACSHSG 567

Query: 508 RLDD 511
            LD+
Sbjct: 568 LLDE 571



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 146/289 (50%), Gaps = 12/289 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI+    T  ++L  C     +E+G  +H  I  N ++ +  +S+ L+ +YA  G + 
Sbjct: 345 KEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMG 404

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +AH VF +M  +   +  WN++I GY++     +A+ L+ +M+    +P+  T   +L A
Sbjct: 405 DAHSVFSEMQVKDIVS--WNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPA 461

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L  +  G+++H   +R GF  D  V NALVDMY KCG +  AR +FD I  KDL+S+
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 521

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
             M+ GY  HG   EA   F  M  +G +PD V+  SIL   S    G    GW     +
Sbjct: 522 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS--HSGLLDEGWGFFNMM 579

Query: 324 EWDLCIA------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
             + CI         ++ + ++ G L +A      MP + D   W +++
Sbjct: 580 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 628


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 259/448 (57%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G+     +F S+L+ C+  +A+  G  +H       L  +  +++ L+R+Y T G I+
Sbjct: 252 QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIE 311

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD M  R   +  W  +I GYAE G  EDA  L+  M+EEG++PD+ T+  ++ A
Sbjct: 312 GARRVFDNMKVRDVVS--WTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    +    ++H      GFG D  V  ALV MYAKCG I  AR VFD +  +D++S+
Sbjct: 370 CAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSW 429

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           ++M+  Y+ +G   EAF+ F  M  +  +PD V   ++L    +   L +G +++   ++
Sbjct: 430 SAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIK 489

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
             +   + + N+LI++ +K G +++A ++FD M ++DV++WN++I     H    EAL  
Sbjct: 490 ADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYL 549

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F++M ++   P+ +TFV +LSAC+  G V  G R F+ ++E  GI P V+ Y CMV+L G
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLG 609

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +DEA  ++++ M  + +  +W +LL AC +HGN+ + E AA++   ++P +   + 
Sbjct: 610 RAGELDEA-ELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYV 668

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L  +Y  AG  ++V +V +++  RG+ 
Sbjct: 669 QLSHMYAAAGMWENVAKVRKVMESRGIR 696



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 233/469 (49%), Gaps = 27/469 (5%)

Query: 54  PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL 113
           P P    +  F  T+    + ++Q L    + G  + + T+  L + C +L+    G ++
Sbjct: 25  PVPSARFRSTF--TRRVGANDVLQRLG---EGGNHIDSRTYVKLFQRCTELRDAALGKQV 79

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
              I     + N    + L++LY+  G + EA Q+FD + N+T     WN+LI+GYA++G
Sbjct: 80  RDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVT--WNALIAGYAQVG 137

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
             ++A AL+ QM +EG+EP   TF  VL AC+    +  G++VH   V  GF  D  +  
Sbjct: 138 HVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGT 197

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           ALV MY K G +  AR VFD +  +D+ ++N M+ GY   G   +AF++F  M   G  P
Sbjct: 198 ALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKP 257

Query: 294 DPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           + ++  SIL        L  G  VH   +  G+  D+ +A SLI +Y+  G ++ A  +F
Sbjct: 258 NKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVF 317

Query: 351 DHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           D+M  +DVVSW  +I  ++++    +A   F  M+ +G+ PD +T++ +++ACA   ++ 
Sbjct: 318 DNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLN 377

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWG 463
               + S  V+  G    +     +V++Y + G I +A      +  F+A P    V W 
Sbjct: 378 HAREIHS-QVDIAGFGTDLLVSTALVHMYAKCGAIKDA------RQVFDAMPRRDVVSWS 430

Query: 464 ALL--YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           A++  Y    +G          K   +EPD      LL    G+ G LD
Sbjct: 431 AMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLL-NACGHLGALD 478



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 210/398 (52%), Gaps = 11/398 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     TF S+L+ C     +  G ++H  + T     +  I + L+ +Y   G +
Sbjct: 150 VDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSM 209

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D+A QVFD +  R    F  N ++ GYA+ G++E A  L+++M++ G++P++ +F  +L 
Sbjct: 210 DDARQVFDGLHIRDVSTF--NVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILD 267

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C     +  G+ VH   +  G   D  V  +L+ MY  CG I  AR VFD +  +D++S
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVS 327

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +  M+ GY  +G + +AF +F  M   G  PD +    I+   A ++ L    ++H  V 
Sbjct: 328 WTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVD 387

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
             G   DL ++ +L+ +Y+K G +  A  +FD MP++DVVSW+++I A+ ++    EA  
Sbjct: 388 IAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFE 447

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F  M+R  + PD +T+++LL+AC HLG++ VG  +++  + K  +   V     ++ + 
Sbjct: 448 TFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI-KADLVSHVPLGNALIIMN 506

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + G ++ A   I + M      + W A++    LHGN
Sbjct: 507 AKHGSVERA-RYIFDTM-VRRDVITWNAMIGGYSLHGN 542


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 255/465 (54%), Gaps = 27/465 (5%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I V +    S+L+ C Q+     G ++H     N L  +  + + L+++Y+  G +  A 
Sbjct: 105 IEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSAR 164

Query: 147 QVFDQMSNRTAFAFP--------------------WNSLISGYAELGEYEDAIALYFQME 186
            +FD+MS R   ++                     W ++I+GY    + E+   L+ +M 
Sbjct: 165 LLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMI 224

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           EE V P+  T   ++ +C  +G +++G+++H   +R GFG    +  ALVDMY KCG+I 
Sbjct: 225 EENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIR 284

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR +FD + NKD++++ +M++ Y     +  AF +F  M  NG  P+ + + S+L+  +
Sbjct: 285 SARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCA 344

Query: 307 L---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +   L +G   H ++ ++GVE D+ +  +LI +Y+K G +  A  LF     +D+ +WN 
Sbjct: 345 VNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNV 404

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           ++     H    +AL  F +ME  GV P+ +TF+  L AC+H G V  G+ LF  M+  +
Sbjct: 405 MMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDF 464

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           G+ P+VEHY CMV+L GRAGL+DEAY MI E M    +  +WGA+L AC +H N  MGE 
Sbjct: 465 GLVPKVEHYGCMVDLLGRAGLLDEAYKMI-ESMPVTPNIAIWGAMLAACKIHKNSNMGEL 523

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AA++L  LEP N     L+  IY  A R +DV  + + + D G++
Sbjct: 524 AARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIK 568



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 193/376 (51%), Gaps = 37/376 (9%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +D+  Q+   ++ RT F        S +     Y  A+  Y  M +  +E D F  P VL
Sbjct: 60  LDQTQQLHAHIT-RTHFNHAQQVSFSPFESHPRY--ALNTYTYMRKLDIEVDSFIIPSVL 116

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           KAC+ + + R+G+++H  +V+ G   D FV+NAL+ MY++CG +V AR +FD++  +D++
Sbjct: 117 KACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVV 176

Query: 262 SYNS----------------------MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           S+++                      M+ GYI    L E   +F  MI     P+ + + 
Sbjct: 177 SWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITML 236

Query: 300 SILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S++ +      +++G ++H ++LR G    L +A +L+ +Y K G++  A  +FD M  K
Sbjct: 237 SLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNK 296

Query: 357 DVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           DV++W ++I A+++ +    A   F QM  +GV P+ LT VSLLS CA  G++ +G + F
Sbjct: 297 DVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWF 355

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
              ++K G+   V     ++++Y + G I  A  +  E ++ +     W  ++    +HG
Sbjct: 356 HAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDI--CTWNVMMAGYGMHG 413

Query: 474 NVCMGETAAQKLFELE 489
               GE A +   E+E
Sbjct: 414 ---YGEKALKLFTEME 426



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NG+     T  SLL  C    A++ G   H  I    +  +  + + L+ +YA  G I  
Sbjct: 327 NGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISG 386

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F +  +R      WN +++GY   G  E A+ L+ +ME  GV+P+  TF   L AC
Sbjct: 387 AQRLFSEAIDRDICT--WNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHAC 444

Query: 205 AGLGLIRVGE 214
           +  GL+  G+
Sbjct: 445 SHAGLVVEGK 454


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 163/493 (33%), Positives = 272/493 (55%), Gaps = 14/493 (2%)

Query: 39  SRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLL 98
           +R    TF +  + S   L+    A     L+AL+ I + L+ S    +     + +  L
Sbjct: 325 ARKVFNTFPNPTRQSHNALIVGY-ARQDQVLEALE-IFRSLQKSY---LDFDEISLSGAL 379

Query: 99  ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158
             C  +K    GI+LH L     L  N  +++ +L +YA  G + EA  +FD M  + A 
Sbjct: 380 TACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAV 439

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           +  WN++I+ + +    E+ +AL+  M    +EPD +TF  V+KACAG   +  G +VH 
Sbjct: 440 S--WNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHG 497

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             ++ G G D FV +A++DMY KCG +V+A  + +R+  +  +S+NS+++G+        
Sbjct: 498 RVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGEN 557

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A   F  M+  G  PD    +++L   AN + + +G Q+HG +L+  +  D+ IA++++ 
Sbjct: 558 ALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVD 617

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLT 392
           +YSK G +  +  +F+  P++D V+W+++I A   H    +A+  FE+M+   V P+H  
Sbjct: 618 MYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTI 677

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           F+S+L ACAH+G V  G   F  M   YG+ P++EHY+CMV+L GR+G ++EA  +I E 
Sbjct: 678 FISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELI-ES 736

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
           M FEA  V+W  LL  C L GNV + E AA  L +L+P +   + LL  +Y  AG   +V
Sbjct: 737 MPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEV 796

Query: 513 ERVERMLVDRGLE 525
            ++   + +  L+
Sbjct: 797 AKIRSFMKNYKLK 809



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 211/380 (55%), Gaps = 11/380 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA +L+ C  ++    G+++H L        +    + L+ +Y+T   +D A  +F +M
Sbjct: 172 TFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEM 231

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R +    W+++I+GY     + + + LY  M +EG+   Q TF    ++CAGL    +
Sbjct: 232 PERNSVC--WSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFEL 289

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++  FG+D  V  A +DMYAKC  +V AR VF+   N    S+N+++ GY  
Sbjct: 290 GTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYAR 349

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCI 329
              ++EA +IFR +  +  D D +++S  L   S ++    G Q+HG  ++ G+++++C+
Sbjct: 350 QDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICV 409

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
           AN+++ +Y+K G L +AC +FD M  KD VSWN+II AH ++    E L  F  M R  +
Sbjct: 410 ANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTM 469

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  TF S++ ACA   ++  G  +   ++ K G+       + ++++Y + G++ EA 
Sbjct: 470 EPDDYTFGSVVKACAGKKALNYGMEVHGRVI-KSGMGLDWFVGSAIIDMYCKCGMLVEA- 527

Query: 447 SMIVEKMEFEASPVVWGALL 466
             I E++E E + V W +++
Sbjct: 528 EKIHERLE-ERTTVSWNSII 546



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 233/452 (51%), Gaps = 31/452 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   TFAS   +C  L A E G +LH          +  + +  L +YA    + +A
Sbjct: 266 GMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDA 325

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+   N T  +   N+LI GYA   +  +A+ ++  +++  ++ D+ +    L AC+
Sbjct: 326 RKVFNTFPNPTRQSH--NALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACS 383

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G ++H  AV+ G  F+  V N ++DMYAKCG +++A  +FD +  KD +S+N+
Sbjct: 384 AIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNA 443

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++  +  +  + E   +F  M+ +  +PD     S++   A    L  G +VHG V++ G
Sbjct: 444 IIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSG 503

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFE 379
           +  D  + +++I +Y K G L +A  + + + ++  VSWNSII   S + +   AL YF 
Sbjct: 504 MGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFS 563

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M + GV+PD+ T+ ++L  CA+L +V++G+++   ++ K  +   V   + +V++Y + 
Sbjct: 564 RMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQIL-KLQLHSDVYIASTIVDMYSKC 622

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN-EH 494
           G + ++      ++ FE +P    V W A++ A   HG   +GE A +   E++  N + 
Sbjct: 623 GNMQDS------RIMFEKAPKRDYVTWSAMICAYAYHG---LGEDAIKLFEEMQLQNVKP 673

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           N  + I +      +          VD+GL +
Sbjct: 674 NHTIFISVLRACAHMG--------FVDKGLHY 697



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 198/450 (44%), Gaps = 52/450 (11%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           P+L +Q   P          I  + S+  N    +  TF+ + + C  LKA+  G + H 
Sbjct: 13  PILNSQTTPPYA--------IHSISSNQMN--PTKKLTFSHIFQKCSNLKAINPGKQAHA 62

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            I          +S+ LL+ Y     ++ A  VFD+M  R   +  WN++I GYA +G  
Sbjct: 63  QITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVIS--WNTMIFGYAGVGNM 120

Query: 176 EDAIALYFQMEEEGV-------------------------------EPDQFTFPRVLKAC 204
           E A  L+  M E  V                               + D  TF  VLKAC
Sbjct: 121 EFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKAC 180

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            G+    +G +VH  A++ GF  D     ALVDMY+ C  +  A  +F  +  ++ + ++
Sbjct: 181 TGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWS 240

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +++ GY+ +    E   +++ M+  G        +S     A  S   +G Q+H + L+ 
Sbjct: 241 AVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKT 300

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
              +D  +  + + +Y+K  ++  A  +F+  P     S N++I  +++     EAL  F
Sbjct: 301 NFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIF 360

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             +++  +  D ++    L+AC+ +     G +L  + V K G+   +     ++++Y +
Sbjct: 361 RSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAV-KCGLDFNICVANTILDMYAK 419

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
            G + EA  +I + ME +   V W A++ A
Sbjct: 420 CGALMEA-CLIFDDMEIK-DAVSWNAIIAA 447


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 253/442 (57%), Gaps = 12/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  +L+ C  L   E G K+H L+    L ++  + + +L +Y  FG ++ A  VFD+M
Sbjct: 126 TYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRM 185

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN+++SG+ + GE   A  ++  M  +G   D+ T   +L AC  +  ++V
Sbjct: 186 LVRDLTS--WNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKV 243

Query: 213 GEKVHLDAVRFGFG---FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           G+++H   VR G      +GF++N+++DMY  C  +  AR +F+ +  KD++S+NS+++G
Sbjct: 244 GKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISG 303

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWD 326
           Y   G   +A ++F  M++ G  PD V + S+LA     S LR+GA V  +V++RG   +
Sbjct: 304 YEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVN 363

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           + +  +LI +Y+  G L  AC +FD MP+K++ +   ++     H +  EA+  F +M  
Sbjct: 364 VVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLG 423

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            GV PD   F ++LSAC+H G V  G+ +F  M   Y + PR  HY+C+V+L GRAG +D
Sbjct: 424 KGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLD 483

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EAY+ ++E M+ + +  VW ALL AC LH NV +   +AQKLFEL PD    +  L  IY
Sbjct: 484 EAYA-VIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIY 542

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
               R +DVE V  ++  R L 
Sbjct: 543 AAERRWEDVENVRALVAKRRLR 564



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 243/476 (51%), Gaps = 53/476 (11%)

Query: 90  QTETFASL-----LETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLID 143
            T TF SL     L++    K++   ++LH  + T   LR+N  +++KL   YA  G + 
Sbjct: 16  STSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMP 75

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  +FDQ+  + +F   WNS+I GYA       A+ LY +M   G +PD FT+P VLKA
Sbjct: 76  YAQHIFDQIVLKNSFL--WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L L  +G KVH   V  G   D +V N+++ MY K GD+  AR VFDR+  +DL S+
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSW 193

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
           N+M++G++ +G    AF++F  M  +GF  D   + ++L+   +   L++G ++HG+V+R
Sbjct: 194 NTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVR 253

Query: 321 RGVEWDLC---IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEA 374
            G    +C   + NS+I +Y     +  A  LF+ +  KDVVSWNS+I  + K     +A
Sbjct: 254 NGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQA 313

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--------------- 419
           L  F +M   G +PD +T +S+L+AC  + ++++G  + S +V++               
Sbjct: 314 LELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGM 373

Query: 420 -------------YGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEASP--VVW 462
                        +   P     AC  MV  +G  G   EA S+  E +    +P   ++
Sbjct: 374 YANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIF 433

Query: 463 GALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            A+L AC   G V  G+    K+   + +EP   H +  L+ + G AG LD+   V
Sbjct: 434 TAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTH-YSCLVDLLGRAGYLDEAYAV 488



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 143/294 (48%), Gaps = 14/294 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK---NKGISSKLLRLYATFG 140
           ++G      T  +LL  C  +  ++ G ++H  +  N       N  + + ++ +Y    
Sbjct: 218 RDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCE 277

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +  A ++F+ +  R      WNSLISGY + G+   A+ L+ +M   G  PD+ T   V
Sbjct: 278 SVSCARKLFEGL--RVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISV 335

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L AC  +  +R+G  V    V+ G+  +  V  AL+ MYA CG +V A  VFD +  K+L
Sbjct: 336 LAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNL 395

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGW 317
            +   M+TG+  HG   EA  IF  M+  G  PD     A+ S  +++ L+  G ++   
Sbjct: 396 PACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYK 455

Query: 318 VLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHM---PQKDVVSWNSIIHA 367
           + R   VE      + L+ +  + G LD+A  + ++M   P +DV  W +++ A
Sbjct: 456 MTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDV--WTALLSA 507


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 259/448 (57%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +N +     TF  +L+ C +L+A+  G ++H LI       +  + + L+ +YA  G ++
Sbjct: 117 ENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVE 176

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD+MS R      WNS+ +GY + G +E+ + L+ +M E  +  D+ T   VL A
Sbjct: 177 VARRVFDEMSERNVRT--WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTA 234

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L  + +GE ++      G   +  ++ +LVDMYAKCG +  AR +FD++  +D++++
Sbjct: 235 CGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAW 294

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLR 320
           ++M++GY       EA D+F  M     DP+ + + SIL++ ++L     G  VH ++ +
Sbjct: 295 SAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKK 354

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIY 377
           + ++  + +  +L+  Y+K G ++ +  +F  MP K+V+SW  +I    ++ +  +AL Y
Sbjct: 355 KRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEY 414

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F  M    V P+ +TF+ +LSAC+H G V  G  LF  M   +GI PR+EHY CMV++ G
Sbjct: 415 FYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILG 474

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAGLI+EA+  I + M  + + V+W  LL +C +H NV +GE + ++L  LEP +  ++ 
Sbjct: 475 RAGLIEEAFQFI-KNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYI 533

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  IY + GR +D  +V   + ++G++
Sbjct: 534 LLSNIYASVGRWEDALKVRGEMKEKGIK 561



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 232/460 (50%), Gaps = 53/460 (11%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF--GLIDEAHQVFDQMSN 154
           +LE C  ++ +   I  H LI T LL K K ++  LL   A      +D A  +F Q+  
Sbjct: 30  ILEQCKTIRDLNE-IHAH-LIKTRLLLKPK-VAENLLESAAILLPTSMDYAVSIFRQIDE 86

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
             + A+  N +I G+       +AI L+ +M E  V+PD+FTFP +LK C+ L  +  GE
Sbjct: 87  PDSPAY--NIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGE 144

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   ++ GFG  GFV N L+ MYA CG++  AR VFD +  +++ ++NSM  GY   G
Sbjct: 145 QIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG 204

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIAN 331
              E   +F  M+      D V + S+L      + L +G  ++ +V  +G++ +  +  
Sbjct: 205 NWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLIT 264

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           SL+ +Y+K G++D A  LFD M ++DVV+W+++I  +S+     EAL  F +M++  + P
Sbjct: 265 SLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDP 324

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID----- 443
           + +T VS+LS+CA LG+++ G +     ++K  +   V     +++ Y + G ++     
Sbjct: 325 NEITMVSILSSCAVLGALETG-KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383

Query: 444 -----------------------------EAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
                                        E + +++EK   E + V +  +L AC   G 
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEK-NVEPNDVTFIGVLSACSHAGL 442

Query: 475 VCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           V  G     +  + F +EP  EH +  ++ I G AG +++
Sbjct: 443 VDEGRDLFVSMSRDFGIEPRIEH-YGCMVDILGRAGLIEE 481


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 253/437 (57%), Gaps = 13/437 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S L+ C  +   E G +LH  +       +   +  L+ +Y+   ++D+A + +D M
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   A  WN+LISGY++ G++ DA++L+ +M  E ++ +Q T   VLK+ A L  I+V
Sbjct: 346 PKKDIIA--WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKV 403

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            +++H  +++ G   D +V+N+L+D Y KC  I +A  +F+    +DL++Y SM+T Y  
Sbjct: 404 CKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQ 463

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   EA  ++  M      PDP   SS+L   AN S    G Q+H   ++ G   D+  
Sbjct: 464 YGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFA 523

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERD 384
           +NSL+ +Y+K G ++ A   F  +P + +VSW+++I     H H K  EAL  F QM RD
Sbjct: 524 SNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGK--EALRLFNQMLRD 581

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           GV P+H+T VS+L AC H G V  G++ F  M   +GI P  EHYACM++L GR+G ++E
Sbjct: 582 GVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNE 641

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  + V  + FEA   VWGALL A  +H N+ +G+ AA+ LF+LEP+      LL  IY 
Sbjct: 642 AVEL-VNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYA 700

Query: 505 NAGRLDDVERVERMLVD 521
           +AG  ++V +V + + D
Sbjct: 701 SAGMWENVAKVRKFMKD 717



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 208/368 (56%), Gaps = 23/368 (6%)

Query: 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
           ++LH  +      ++  + + L+ LY+       A ++ D+ S     +  W+SL+SGY 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVS--WSSLLSGYV 58

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           + G  E+A+ ++ +M   GV+ ++FTFP VLKAC+    + +G KVH  AV  GF  DGF
Sbjct: 59  QNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGF 118

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V N LV MYAKCG +  +R +F  I  ++++S+N++ + Y+   L  EA  +F+ M+ +G
Sbjct: 119 VANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG 178

Query: 291 FDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
             P+  +IS IL   + L+   +G ++HG +L+ G++ D   AN+L+ +YSK G+++ A 
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 348 WLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +F  +   DVVSWN+II     H  +  AL+  ++M+  G  P+  T  S L ACA +G
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEASP--- 459
             ++G +L S +++   +    + +A   +V++Y +  ++D+A      +  +++ P   
Sbjct: 299 FKELGRQLHSSLIK---MDAHSDLFAAVGLVDMYSKCEMMDDA------RRAYDSMPKKD 349

Query: 460 -VVWGALL 466
            + W AL+
Sbjct: 350 IIAWNALI 357



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 218/410 (53%), Gaps = 14/410 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF S+L+ C   + +  G K+H +        +  +++ L+ +YA  GL+D++
Sbjct: 77  GVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDS 136

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F  +  R   +  WN+L S Y +     +A+ L+ +M   G+ P++F+   +L ACA
Sbjct: 137 RRLFGGIVERNVVS--WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL    +G K+H   ++ G   D F  NALVDMY+K G+I  A  VF  I + D++S+N+
Sbjct: 195 GLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNA 254

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
           ++ G + H     A  +   M  +G  P+   +SS L   + +    +G Q+H  +++  
Sbjct: 255 IIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMD 314

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DH-EALIYFE 379
              DL  A  L+ +YSK   +D A   +D MP+KD+++WN++I  +S+  DH +A+  F 
Sbjct: 315 AHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFS 374

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M  + +  +  T  ++L + A L ++KV +++ ++ + K GI         +++ YG+ 
Sbjct: 375 KMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI-KSGIYSDFYVINSLLDTYGKC 433

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
             IDEA S I E+  +E   V + +++ A   +G+   GE A +   +++
Sbjct: 434 NHIDEA-SKIFEERTWE-DLVAYTSMITAYSQYGD---GEEALKLYLQMQ 478



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 232/471 (49%), Gaps = 46/471 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++GI     + + +L  C  L+  + G K+H L+    L  ++  ++ L+ +Y+  G I
Sbjct: 175 VRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEI 234

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  VF  +++    +  WN++I+G       + A+ L  +M+  G  P+ FT    LK
Sbjct: 235 EGAVAVFQDIAHPDVVS--WNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALK 292

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA +G   +G ++H   ++     D F    LVDMY+KC  +  AR  +D +  KD+I+
Sbjct: 293 ACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA 352

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N++++GY   G  ++A  +F  M     D +   +S++L   A+   +++  Q+H   +
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           + G+  D  + NSL+  Y K   +D+A  +F+    +D+V++ S+I A+S+     EAL 
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALK 472

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            + QM+   + PD     SLL+ACA+L + + G++L  V   K+G    +     +VN+Y
Sbjct: 473 LYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL-HVHAIKFGFMCDIFASNSLVNMY 531

Query: 437 GRAGLI---DEAYSMIVEKMEFEASPVVWG------------------------------ 463
            + G I   D A+S I  +     S ++ G                              
Sbjct: 532 AKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLV 591

Query: 464 ALLYACYLHGNVCMGETAAQK---LFELEPDNEHNFELLIKIYGNAGRLDD 511
           ++L AC   G V  G+   +K   +F ++P  EH +  +I + G +G+L++
Sbjct: 592 SVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEH-YACMIDLLGRSGKLNE 641



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 147/266 (55%), Gaps = 13/266 (4%)

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   ++FGF  D  + N LV +Y+KC     AR + D     D++S++S+L+GY+ +G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIAN 331
            + EA  +F  M L G   +     S+L   S+   L +G +VHG  +  G E D  +AN
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLP 388
           +L+V+Y+K G LD +  LF  + +++VVSWN++   + +     EA+  F++M R G++P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +  +   +L+ACA L    +G ++  +M+ K G+         +V++Y +AG I+ A ++
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLML-KMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 449 IVEKMEFEASP--VVWGALLYACYLH 472
             +     A P  V W A++  C LH
Sbjct: 241 FQDI----AHPDVVSWNAIIAGCVLH 262


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/444 (36%), Positives = 252/444 (56%), Gaps = 9/444 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     T +S L+ C  +   E G +LH  +    +  +  +S  L+ +Y+   L++
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F+ +  +   A  WN++ISGY++  E  +A++L+ +M +EG+  +Q T   +LK+
Sbjct: 412 DARMAFNLLPEKDLIA--WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 469

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            AGL ++ V  +VH  +V+ GF  D +V+N+L+D Y KC  +  A  +F+     DL+S+
Sbjct: 470 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 529

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
            SM+T Y  +G   EA  +F  M      PD    SS+L   AN S    G Q+H  +L+
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 589

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D+   NSL+ +Y+K G +D A   F  + ++ +VSW+++I     H    +AL  
Sbjct: 590 YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQL 649

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM ++GV P+H+T VS+L AC H G V   +  F  M E +G  P  EHYACM++L G
Sbjct: 650 FNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLG 709

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG I+EA  + V KM FEA+  VWGALL A  +H +V +G  AA+ LF LEP+      
Sbjct: 710 RAGKINEAVEL-VNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 768

Query: 498 LLIKIYGNAGRLDDVERVERMLVD 521
           LL  IY +AG+ ++V  V R++ D
Sbjct: 769 LLANIYASAGKWENVAEVRRLMRD 792



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 227/419 (54%), Gaps = 26/419 (6%)

Query: 65  PKTKL-QALDSIIQDLESSV------QNGITVQTETFASLLETCYQLKAVEHGIKLHRLI 117
           P  KL Q +    QD +++       +   T  + +++ LL  C   K++  G+++H  I
Sbjct: 23  PAPKLIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHI 82

Query: 118 PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177
             + L  +  I + L+ LY+       A ++ D+ S     +  W++LISGYA+ G    
Sbjct: 83  TKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVS--WSALISGYAQNGLGGG 140

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           A+  + +M   GV+ ++FTF  VLKAC+ +  +R+G++VH   V  GF  D FV N LV 
Sbjct: 141 ALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVV 200

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
           MYAKC + + ++ +FD I  ++++S+N++ + Y+      EA  +F  M+L+G  P+  +
Sbjct: 201 MYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFS 260

Query: 298 ISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           +SS++   + LR    G  +HG++++ G +WD   AN+L+ +Y+K G L  A  +F+ + 
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK 320

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           Q D+VSWN++I     H    +AL    QM+R G+ P+  T  S L ACA +G  ++G +
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQ 380

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL 466
           L S ++ K  +   +     +V++Y +  L+++A      +M F   P    + W A++
Sbjct: 381 LHSSLM-KMDMESDLFVSVGLVDMYSKCDLLEDA------RMAFNLLPEKDLIAWNAII 432



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 242/484 (50%), Gaps = 53/484 (10%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF+S+L+ C  +K +  G ++H ++  +    +  +++ L+ +YA      ++
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS 211

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD++  R   +  WN+L S Y ++    +A+ L+++M   G++P++F+   ++ AC 
Sbjct: 212 KRLFDEIPERNVVS--WNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL     G+ +H   ++ G+ +D F  NALVDMYAK GD+  A +VF++I   D++S+N+
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ G + H    +A ++   M  +G  P+   +SS L   A   L  +G Q+H  +++  
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD 389

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFE 379
           +E DL ++  L+ +YSK   L+ A   F+ +P+KD+++WN+II  +S+   D EAL  F 
Sbjct: 390 MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 449

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV---------------MVEKYGISP 424
           +M ++G+  +  T  ++L + A L  V V  ++  +               +++ YG   
Sbjct: 450 EMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS 509

Query: 425 RVE---------------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLY 467
            VE                +  M+  Y + G  +EA  + +E  + E  P   V  +LL 
Sbjct: 510 HVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLN 569

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFEL-------LIKIYGNAGRLDDVERVERMLV 520
           AC    N+   E   Q    +    ++ F L       L+ +Y   G +DD  R    L 
Sbjct: 570 AC---ANLSAFEQGKQLHVHIL---KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT 623

Query: 521 DRGL 524
           +RG+
Sbjct: 624 ERGI 627



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 237/479 (49%), Gaps = 47/479 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V +GI     + +S++  C  L+    G  +H  +       +   ++ L+ +YA  G +
Sbjct: 250 VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL 309

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A  VF+++      +  WN++I+G      +E A+ L  QM+  G+ P+ FT    LK
Sbjct: 310 ADAISVFEKIKQPDIVS--WNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK 367

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAG+GL  +G ++H   ++     D FV   LVDMY+KC  +  AR  F+ +  KDLI+
Sbjct: 368 ACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 427

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N++++GY  +   +EA  +F  M   G   +   +S+IL   A   ++ +  QVHG  +
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALI 376
           + G   D+ + NSLI  Y K   ++ A  +F+     D+VS+ S+I A++   +  EAL 
Sbjct: 488 KSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M+   + PD     SLL+ACA+L + + G++L  V + KYG    +     +VN+Y
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL-HVHILKYGFVLDIFAGNSLVNMY 606

Query: 437 GRAGLIDE---AYSMIVEKMEFEASPVVWG------------------------------ 463
            + G ID+   A+S + E+     S ++ G                              
Sbjct: 607 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLV 666

Query: 464 ALLYACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDD-VERVERM 518
           ++L AC   G V   +    + ++LF  +P  EH +  +I + G AG++++ VE V +M
Sbjct: 667 SVLGACNHAGLVTEAKLYFESMEELFGFKPMQEH-YACMIDLLGRAGKINEAVELVNKM 724


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 258/446 (57%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+ S+L TC  L A++ G ++H  +  +  + N  + S L+ +YA  G +D A
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTA 469

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +  ++  R      W ++I+GY +   + +A+ L+ +ME +G+  D   F   + ACA
Sbjct: 470 RGILQRL--REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA 527

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +  G+++H  +   G+  D  + NALV +YA+CG    A   F++I  KD IS+N+
Sbjct: 528 GIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNA 587

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           +++G+   G   EA  +F  M   G + +     S +   AN + ++ G Q+H  +++ G
Sbjct: 588 LISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTG 647

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFE 379
            + +   +N LI +YSK G ++ A   F  MP+K+VVSWN++I  +S+     EA+  FE
Sbjct: 648 YDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFE 707

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M++ G++P+H+TFV +LSAC+H+G V  G   F  M +++G+ P+ EHY C+V+L GRA
Sbjct: 708 EMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRA 767

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
            L+  A   I E+M  E   ++W  LL AC +H N+ +GE AA+ L ELEP++   + LL
Sbjct: 768 ALLCCAREFI-EEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLL 826

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y  +G+ D  +R  +M+ DRG++
Sbjct: 827 SNMYAVSGKWDYRDRTRQMMKDRGVK 852



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 205/391 (52%), Gaps = 19/391 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ASLL  C  + A   G +LH  +    +  +  I   LL LY     I+ AH+ F  +
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYF--L 373

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +  T     WN ++  Y +LG   ++  ++ QM+ EG+ P+Q+T+P +L+ C  LG + +
Sbjct: 374 TTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDL 433

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H   ++ GF F+ +V + L+DMYAK G++  AR +  R+  +D++S+ +M+ GY  
Sbjct: 434 GEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQ 493

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           H L  EA  +F+ M   G   D +  SS +   A    L  G Q+H      G   DL I
Sbjct: 494 HDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSI 553

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+ +Y++ G+   A   F+ +  KD +SWN++I   ++     EAL  F QM + GV
Sbjct: 554 GNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGV 613

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             +  TF S +SA A+  ++K G+++ ++M+ K G     E    ++ LY + G I++A 
Sbjct: 614 EANLFTFGSAVSATANTANIKQGKQIHAMMI-KTGYDSETEASNVLITLYSKCGSIEDA- 671

Query: 447 SMIVEKMEF----EASPVVWGALLYACYLHG 473
                K EF    E + V W A++     HG
Sbjct: 672 -----KREFFEMPEKNVVSWNAMITGYSQHG 697



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 236/452 (52%), Gaps = 15/452 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI    +T+  L E C+   ++    KLH  I  +       + S+L+ +Y   G +D
Sbjct: 3   ERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVD 62

Query: 144 EAHQVFDQM-SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            A ++FD + S+  +F   WN +ISG          + L+  M  E V PD+ TF  VL+
Sbjct: 63  NAIKLFDDIPSSNVSF---WNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 203 ACA-GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           AC+ G    +V E++H   +  GFG    V N L+D+Y+K G +  A+ VF+R+  KD +
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWV 318
           S+ +M++G   +G   EA  +F  M  +   P P   SS+L+  +   L ++G Q+HG++
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEAL 375
           ++ G+  +  + N+L+ +YS+ G L  A  +F  M ++D +S+NS+I   ++      AL
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRAL 299

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+M+ D + PD +T  SLLSACA +G+   G++L S ++ K G+S  +     +++L
Sbjct: 300 QLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI-KMGMSSDLIIEGSLLDL 358

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE-TAAQKLFELEPDNEH 494
           Y +   I+ A+   +   E E + V+W  +L A    GN+        Q   E    N++
Sbjct: 359 YVKCFDIETAHEYFL-TTETE-NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
            +  +++   + G LD  E++   ++  G +F
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQF 448



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 215/391 (54%), Gaps = 12/391 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKA-VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           +   +T    TFAS+L  C   KA  +   ++H  I  +    +  + + L+ LY+  G 
Sbjct: 103 ITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGH 162

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +D A  VF+++  + + +  W ++ISG ++ G  ++AI L+ QM +  V P  + F  VL
Sbjct: 163 VDLAKLVFERLFLKDSVS--WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVL 220

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC  + L ++GE++H   V++G   + FV NALV +Y++ G+++ A  +F ++  +D I
Sbjct: 221 SACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI 280

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
           SYNS+++G    G    A  +F  M L+   PD V ++S+L+  + +     G Q+H +V
Sbjct: 281 SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYV 340

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEAL 375
           ++ G+  DL I  SL+ +Y K   ++ A   F     ++VV WN ++ A+ +     E+ 
Sbjct: 341 IKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESY 400

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F QM+ +G++P+  T+ S+L  C  LG++ +GE++ + ++ K G    V   + ++++
Sbjct: 401 WIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI-KSGFQFNVYVCSVLIDM 459

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           Y + G +D A   I++++  E   V W A++
Sbjct: 460 YAKHGELDTARG-ILQRLR-EEDVVSWTAMI 488



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           + Q++E+    GI      F+S +  C  ++A+  G ++H     +   ++  I + L+ 
Sbjct: 503 LFQEMEN---QGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVS 559

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           LYA  G   +A+  F+++  +   +  WN+LISG+A+ G  E+A+ ++ QM + GVE + 
Sbjct: 560 LYARCGRAQDAYLAFEKIDAKDNIS--WNALISGFAQSGHCEEALQVFSQMNQAGVEANL 617

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FTF   + A A    I+ G+++H   ++ G+  +    N L+ +Y+KCG I  A+  F  
Sbjct: 618 FTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFE 677

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +  K+++S+N+M+TGY  HG   EA  +F  M   G  P+ V    +L+  S
Sbjct: 678 MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACS 729



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 136/265 (51%), Gaps = 12/265 (4%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           MEE G+  +  T+  + + C   G +   +K+H    + GF  +  + + L+D+Y   G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  A  +FD I + ++  +N +++G +   L  +   +F  MI     PD    +S+L  
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 305 AS----LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
            S      ++  Q+H  ++  G      + N LI +YSK+G +D A  +F+ +  KD VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 361 WNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W ++I   S   ++ EA++ F QM +  V+P    F S+LSAC  +   K+GE+L   +V
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 418 EKYGISPRVEHYAC--MVNLYGRAG 440
            K+G+S   E + C  +V LY R G
Sbjct: 241 -KWGLSS--ETFVCNALVTLYSRWG 262



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G+     TF S +        ++ G ++H ++           S+ L+ LY+  G I+
Sbjct: 610 QAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + F +M  +   +  WN++I+GY++ G   +A++L+ +M++ G+ P+  TF  VL A
Sbjct: 670 DAKREFFEMPEKNVVS--WNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSA 727

Query: 204 CAGLGLIRVG 213
           C+ +GL+  G
Sbjct: 728 CSHVGLVNEG 737


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 263/449 (58%), Gaps = 11/449 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF++ L+ C  L  VE+G+++H +   +       + +  + +Y+  G I  
Sbjct: 99  SGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGM 158

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A QVF++M  R   +  WN++I+G+   G    ++ L+ +M+ +G  PD+FTF   LKAC
Sbjct: 159 AEQVFNKMPFRNLVS--WNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKAC 216

Query: 205 AGLGLIRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
             LG IR G ++H   +  GF       + +A+VD+YAKCG + +A+ VFDRI  K+LIS
Sbjct: 217 GALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS 276

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVL 319
           +++++ G+   G L+EA D+FR +  +  + D   +S    + A+ +L+  G Q+H ++L
Sbjct: 277 WSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYIL 336

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           +     D+ +ANS+I +Y K G  ++A  LF  M  ++VVSW  +I  + K     +A+ 
Sbjct: 337 KVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIH 396

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M+ DG+  D + +++LLSAC+H G ++  +  FS +   + + P +EHYACMV++ 
Sbjct: 397 LFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDIL 456

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA ++I E M+ + +  +W  LL AC +HGN+ +G    + LF ++ DN  N+
Sbjct: 457 GRAGQLKEAKNLI-ENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNY 515

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++  IY  AG   + ERV +++  +GL+
Sbjct: 516 VMMSNIYAEAGYWKECERVRKLVKAKGLK 544



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 231/470 (49%), Gaps = 48/470 (10%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           + +  A LL  C +    + G+++H          +  +++ L+ +Y     +D A  VF
Sbjct: 3   ERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVF 62

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+M  R   +  W +L+ GY + G  + ++AL  +M   GV+P++FTF   LKAC  LG+
Sbjct: 63  DRMLERNVVS--WTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGV 120

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +  G ++H   V+ GF +   V NA +DMY+KCG I  A  VF+++  ++L+S+N+M+ G
Sbjct: 121 VENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG 180

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWD 326
           + H G   ++  +F+ M   G  PD    +S L     L   R G Q+H  ++ RG    
Sbjct: 181 HTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPIS 240

Query: 327 L--CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQM 381
           +   IA++++ +Y+K G L +A  +FD + QK+++SW+++I   +++    EA+  F Q+
Sbjct: 241 IRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL 300

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE------------------KYGIS 423
                  D      ++   A L  V+ G+++   +++                  K G++
Sbjct: 301 RESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLT 360

Query: 424 PRVEH------------YACMVNLYGRAGLIDEAYSMIVEKMEF---EASPVVWGALLYA 468
              E             +  M+  YG+ GL ++A  +   +M+    E   V + ALL A
Sbjct: 361 EEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLF-NRMQLDGIELDEVAYLALLSA 419

Query: 469 CYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           C   G +   +    +L    +++P+ EH +  ++ I G AG+L + + +
Sbjct: 420 CSHSGLIRESQEYFSRLCNNHQMKPNIEH-YACMVDILGRAGQLKEAKNL 468


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 267/474 (56%), Gaps = 42/474 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F  LL++C + KA E G ++H  +       ++ + + L+ +YA  G +++A +VFD  
Sbjct: 66  SFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDAS 125

Query: 153 SNR---------TAFA--------------------FPWNSLISGYAELGEYEDAIALYF 183
           S+R         T +A                      WN++I+GY E G YE+A+ L+ 
Sbjct: 126 SHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFK 185

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH----LDAVRFGFGFDGFVLNALVDMY 239
           +M    V PD+ T   V+ ACA  G I +G +VH     D    GF     ++NAL+D+Y
Sbjct: 186 EMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLY 245

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           +KCGD+  A  +F+ +  KD++S+N+++ GY H  L  EA  +F+ M+ +G  P+ V + 
Sbjct: 246 SKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLL 305

Query: 300 SIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           S+L   A+   + IG  +H ++ ++  GV  +  +  SLI +Y+K G ++ A  +F+ M 
Sbjct: 306 SVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSML 365

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            + + SWN++I     H + + A   F +M  + V PD +TFV LLSAC+H G + +G +
Sbjct: 366 YRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQ 425

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +F  M + Y ++P++EHY CM++L G +GL  EA  MI   M  E   V+W +LL AC  
Sbjct: 426 IFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMI-HTMPMEPDGVIWCSLLKACKK 484

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           HGN+ + E+ AQKL ++EP+N  ++ LL  IY  AGR +DV RV  +L  +G++
Sbjct: 485 HGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMK 538



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 202/398 (50%), Gaps = 57/398 (14%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN+++ G+A   +   A+ +Y +M   G  P+ ++FP +LK+CA       G ++H   +
Sbjct: 32  WNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVL 91

Query: 222 RFGFGFDGFVLNALVDMYAK---------------------C----------GDIVKART 250
           + G G D +V  +L+ MYA+                     C          GD   AR 
Sbjct: 92  KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARK 151

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASL 307
           VFD I  +D++S+N+M+TGY+ +G   EA ++F+ M+     PD    V++ S  A +  
Sbjct: 152 VFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGS 211

Query: 308 LRIGAQVHGWV----LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           + +G QVH WV       G    L I N+LI +YSK G ++ A  LF+ +  KDVVSWN+
Sbjct: 212 IELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNT 271

Query: 364 IIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK- 419
           +I  ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V ++K 
Sbjct: 272 LIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIG-RWIHVYIDKK 330

Query: 420 -YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
             G++        ++++Y + G I+ A+ +    +    S   W A+++   +HG     
Sbjct: 331 LKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS--WNAMIFGFAMHGRA--- 385

Query: 479 ETAAQKLF------ELEPDNEHNFELLIKIYGNAGRLD 510
             AA  LF       +EPD+   F  L+    ++G LD
Sbjct: 386 -NAAFDLFSRMRGNRVEPDDI-TFVGLLSACSHSGLLD 421



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 43/268 (16%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A +VF+ I   +L+ +N+ML G+      V A +++  M+  G  P+  +   +L   A 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA--------------CW-- 348
           +     G Q+H  VL+ G   D  +  SLI +Y+++G L+ A              C   
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 349 ---------------LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
                          +FD + ++DVVSWN++I  + ++    EAL  F++M R  V PD 
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 391 LTFVSLLSACAHLGSVKVGERLFS---VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
            T VS++SACA  GS+++G ++ S      + +G S  ++    +++LY + G ++ A+ 
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNV 475
           +  E +  +   V W  L+   Y H N+
Sbjct: 257 LF-EGLSCK-DVVSWNTLIGG-YTHTNL 281


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 272/477 (57%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  +L++C + KA + G ++H  +       +  + + L+ +Y   G +++A
Sbjct: 129 GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDA 188

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
           H+VFD+  +R   ++                              WN++ISGYAE G Y+
Sbjct: 189 HKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+  M +  V PD+ T   V+ ACA  G I +G +VHL     GFG +  ++NAL+
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++  A  +F+R+  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  +F+
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +  K + SWN++I     H +   +   F +M + G+ PD +TFV LLSAC+H G + +
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M + Y ++P++EHY CM++L G +GL  +    ++  ME E   V+W +LL A
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLF-KEAEEMINMMEMEPDGVIWCSLLKA 547

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +HGNV +GE+ A+ L ++EP+N  ++ LL  IY +AGR ++V +   +L D+G++
Sbjct: 548 CKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 232/471 (49%), Gaps = 61/471 (12%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR---LYATFGLIDE 144
           +++     SLL  C  L+++   I   ++I   L   N  +S KL+    L   F  +  
Sbjct: 30  SIRNHPSLSLLHNCKTLQSLR--IIHAQMIKIGLHNTNYALS-KLIEFCILSPHFEGLPY 86

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF  +         WN++  G+A   +   A+ LY  M   G+ P+ +TFP VLK+C
Sbjct: 87  AISVFKTIQEPNLLI--WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG---------------DIV--- 246
           A     + G+++H   ++ G   D +V  +L+ MY + G               D+V   
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204

Query: 247 -------------KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
                         A+ +FD I  KD++S+N+M++GY   G   EA ++F+ M+     P
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264

Query: 294 DP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D    V + S  A +  + +G QVH W+   G   +L I N+LI +YSK G+L+ AC LF
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324

Query: 351 DHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           + +P KDV+SWN++I  ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ 
Sbjct: 325 ERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384

Query: 408 VGERLFSVMVEKY--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           +G R   V ++K   G++        ++++Y + G I+ A+ +    +    S   W A+
Sbjct: 385 IG-RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS--WNAM 441

Query: 466 LYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
           ++   +HG       A+  LF       ++PD+   F  L+    ++G LD
Sbjct: 442 IFGFAMHGRA----DASFDLFSRMRKIGIQPDDI-TFVGLLSACSHSGMLD 487



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 166/364 (45%), Gaps = 33/364 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  +     T  +++  C Q  ++E G ++H  I  +    N  I + L+ LY+  G +
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F+++  +   +  WN+LI GY  +  Y++A+ L+ +M   G  P+  T   +L 
Sbjct: 318 ETACGLFERLPYKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375

Query: 203 ACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           ACA LG I +G  +H  +D    G      +  +L+DMYAKCGDI  A  VF+ I +K L
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+N+M+ G+  HG    +FD+F  M   G  PD +    +L+  S        H  +L 
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS--------HSGMLD 487

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380
            G      I  ++   Y    KL+    + D +    +                    E 
Sbjct: 488 LGRH----IFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFK---------------EAEEM 528

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           +    + PD + + SLL AC   G+V++GE     +++    +P    Y  + N+Y  AG
Sbjct: 529 INMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP--GSYVLLSNIYASAG 586

Query: 441 LIDE 444
             +E
Sbjct: 587 RWNE 590


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 252/472 (53%), Gaps = 17/472 (3%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  +P+  L    S+ Q++++       V   T  S+L  C  L  ++ G  +H      
Sbjct: 407 QTGYPEEAL----SLFQEMQNQKMKPNRV---TLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
            +  +    + L+ +YA  G    A   F++MS+R      WNSLI+GYA++G+  +AI 
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVT--WNSLINGYAQIGDPYNAID 517

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           +++++    + PD  T   V+ ACA L  +  G  +H   V+ GF  D  V NAL+DMYA
Sbjct: 518 MFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYA 577

Query: 241 KCGDIVKARTVFDRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           KCG +  A  +F++    KD +++N ++  Y+ +G   EA   F  M L  F P+ V   
Sbjct: 578 KCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFV 637

Query: 300 SILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S+L  A+ L   R G   H  +++ G   +  + NSLI +Y+K G+LD +  LF+ M  K
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK 697

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           D VSWN+++     H     A+  F  M+   V  D ++FVS+LSAC H G V+ G ++F
Sbjct: 698 DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIF 757

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M +KY I P +EHYACMV+L GRAGL DE    I + M  E    VWGALL +C +H 
Sbjct: 758 HSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFI-KVMPVEPDAGVWGALLGSCRMHS 816

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           NV +GE A   L +LEP N  +F +L  IY  +GR  D  +    + D GL+
Sbjct: 817 NVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 222/429 (51%), Gaps = 15/429 (3%)

Query: 44  TTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
           + F S P  +P+ +L N      T+ +  +  ++     V+ G+     TF  +L+ C  
Sbjct: 84  SVFDSTP--NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
              ++ G+  H  I    L ++  I + L+ +Y+  G +  A +VFD+M  R   A  WN
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA--WN 199

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I+G ++  +  +A+  +  M+  GVEP   +   +      L  I +   +H     F
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH--GYVF 257

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
              F   V N L+D+Y+KCGD+  AR VFD++ ++D +S+ +M+ GY H+G  VE  ++F
Sbjct: 258 RRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 317

Query: 284 RGMILNGFDPDPV-AISSILANASLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M L     + V A+S+ LA A  + +  G ++HG  L++ ++ D+ +A  L+V+Y+K 
Sbjct: 318 DKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLL 397
           G+ ++A  LF  +  +D+V+W++II A  +     EAL  F++M+   + P+ +T +S+L
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            ACA L  +K+G+ +    V K  +   +     +V++Y + G    A +    +M    
Sbjct: 438 PACADLSLLKLGKSIHCFTV-KADMDSDLSTGTALVSMYAKCGFFTAALTTF-NRMS-SR 494

Query: 458 SPVVWGALL 466
             V W +L+
Sbjct: 495 DIVTWNSLI 503



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 210/375 (56%), Gaps = 19/375 (5%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           HG  L + I +++L     +++ L+ +YA  G  ++A Q+F  +  R   A  W+++I+ 
Sbjct: 352 HGCALQQRIDSDIL-----VATPLMVMYAKCGETEKAKQLFWGLQGRDLVA--WSAIIAA 404

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
             + G  E+A++L+ +M+ + ++P++ T   +L ACA L L+++G+ +H   V+     D
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
                ALV MYAKCG    A T F+R+ ++D++++NS++ GY   G    A D+F  + L
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 289 NGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +  +PD   +  ++   +LL     G  +HG +++ G E D  + N+LI +Y+K G L  
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 346 ACWLFDHMP-QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           A +LF+     KD V+WN II A+ ++    EA+  F QM  +   P+ +TFVS+L A A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           +L + + G    + +++   +S  +   + ++++Y + G +D +  +  E M+ + + V 
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNS-LIDMYAKCGQLDYSEKLFNE-MDHKDT-VS 701

Query: 462 WGALL--YACYLHGN 474
           W A+L  YA + HG+
Sbjct: 702 WNAMLSGYAVHGHGD 716



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 192/361 (53%), Gaps = 21/361 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  LL +C  L  +   +++H  I  +  + +  I+  L+ LY+ F   D A  VFD   
Sbjct: 35  YPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDLARSVFDSTP 90

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N +     WNS+I  Y    +Y +A+ +Y+ M E+G+EPD++TF  VLKAC G   ++ G
Sbjct: 91  NPSRIL--WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG 148

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
              H +  R G   D F+   LVDMY+K GD+ +AR VFD++  +D++++N+M+ G    
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 208

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSI------LANASLLRIGAQVHGWVLRRGVEWDL 327
               EA D FR M L G +P  V++ ++      L+N  L R    +HG+V RR  ++  
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR---SIHGYVFRR--DFSS 263

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERD 384
            ++N LI +YSK G +D A  +FD M  +D VSW +++  ++ +    E L  F++M+  
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 323

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V  + ++ VS   A A    ++ G+ +    +++   S  +     MV +Y + G  ++
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMV-MYAKCGETEK 382

Query: 445 A 445
           A
Sbjct: 383 A 383



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 200/392 (51%), Gaps = 15/392 (3%)

Query: 111 IKLHRLIPTNLLRKN--KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           I+L R I   + R++    +S+ L+ LY+  G +D A +VFDQM ++   +  W ++++G
Sbjct: 246 IELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS--WGTMMAG 303

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           YA  G + + + L+ +M+   V  ++ +      A A    +  G+++H  A++     D
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSD 363

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V   L+ MYAKCG+  KA+ +F  +  +DL+++++++   +  G   EA  +F+ M  
Sbjct: 364 ILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQN 423

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
               P+ V + SIL   A+ SLL++G  +H + ++  ++ DL    +L+ +Y+K G    
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A   F+ M  +D+V+WNS+I+ +++    + A+  F ++    + PD  T V ++ ACA 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
           L  +  G  +  ++V K G          ++++Y + G +  A   +  K +F    V W
Sbjct: 544 LNDLDQGTCIHGLIV-KLGFESDCHVKNALIDMYAKCGSLPSA-EFLFNKTDFTKDEVTW 601

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
             ++ A   +G+    + A     ++  +N H
Sbjct: 602 NVIIAAYMQNGH---AKEAISSFHQMRLENFH 630


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 255/439 (58%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ ++L  C  L A+E G ++H  I  +    +  +S+ L ++Y   G   +A +VF+ +
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R   A  WN++I G+ + G+ E+A   + +M EEGV PD+ T+  VL ACA  G +  
Sbjct: 292 SYRDVIA--WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLAR 349

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  A + G   D    NAL++MY+K G +  AR VFDR+  +D++S+ ++L  Y  
Sbjct: 350 GKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYAD 409

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
              +VE+F  F+ M+  G   + +    +L   +N   L+ G ++H  V++ G+  DL +
Sbjct: 410 CDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAV 469

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N+L+ +Y K G ++ A  +F+ M  +DVV+WN++I     + +  EAL  +E M+ +G+
Sbjct: 470 TNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGM 529

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+  TFV++LSAC     V+ G R F+ M + YGI P  +HYACMV++  RAG + EA 
Sbjct: 530 RPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAE 589

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I+  +  + S  +WGALL AC +H NV +GE AA+   +LEP N   +  L  IY  A
Sbjct: 590 DVIL-TIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAA 648

Query: 507 GRLDDVERVERMLVDRGLE 525
           G   DV ++ + + +RG++
Sbjct: 649 GMWRDVAKLRKFMKERGVK 667



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 209/389 (53%), Gaps = 11/389 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G  V +  +  LL++C + K +  G ++H  I    ++ N  I++ LL+LYA  G ++
Sbjct: 21  RKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVN 80

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA Q+FD+ SN++  +  WN +ISGYA  G  ++A  L+  M++E +EPD+FTF  +L A
Sbjct: 81  EARQLFDKFSNKSVVS--WNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+   ++  G ++H+  +  G   D  V NAL+ MYAKCG +  AR VFD + ++D +S+
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
            ++   Y   G   E+   +  M+     P  +   ++L+   + + L  G Q+H  ++ 
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
                D+ ++ +L  +Y K G    A  +F+ +  +DV++WN++I       +  EA   
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M  +GV PD  T+ ++LSACA  G +  G+ + +    K G+   V     ++N+Y 
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHA-RAAKDGLVSDVRFGNALINMYS 377

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +AG + +A   + ++M  +   V W  LL
Sbjct: 378 KAGSMKDA-RQVFDRMP-KRDVVSWTTLL 404



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 194/386 (50%), Gaps = 41/386 (10%)

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G Y  A  L + +  +G + D + + ++L++C     + VG++VH   +R G   + ++ 
Sbjct: 8   GWYAPADVLQY-LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYIT 66

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N L+ +YA CG + +AR +FD+  NK ++S+N M++GY H GL  EAF++F  M     +
Sbjct: 67  NTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLE 126

Query: 293 PDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           PD     SIL+  S   +L  G ++H  V+  G+  D  + N+LI +Y+K G +  A  +
Sbjct: 127 PDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRV 186

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD M  +D VSW ++  A+++     E+L  +  M ++ V P  +T++++LSAC  L ++
Sbjct: 187 FDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAAL 246

Query: 407 KVGERLFSVMVE-KYGISPRV------------------EHYAC-----------MVNLY 436
           + G+++ + +VE +Y    RV                  E + C           M+  +
Sbjct: 247 EKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGF 306

Query: 437 GRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
             +G ++EA+      +E   +P    +  +L AC   G +  G+    +  +    ++ 
Sbjct: 307 VDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDV 366

Query: 495 NF-ELLIKIYGNAGRLDDVERV-ERM 518
            F   LI +Y  AG + D  +V +RM
Sbjct: 367 RFGNALINMYSKAGSMKDARQVFDRM 392


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 264/469 (56%), Gaps = 12/469 (2%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTE--TFASLLETCYQLKAVEHGIKLHR--LIPTNLLR 123
           K   LD  ++ +ESS    I  + E  + +  L  C   +++EHG KLH   L   N + 
Sbjct: 45  KWGNLDKALRLIESSKPTPIEEEEEEESISLFLHACISRRSLEHGRKLHLHLLRSQNRVL 104

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           +N  + +KL+ LY+  G ++EA +VF     +      W ++  GY+  G   +A+ LY 
Sbjct: 105 ENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYR 164

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAKC 242
            M    V+P  F F   LKAC+ L    VG  +H   V+   G  D  V NAL+ +Y + 
Sbjct: 165 DMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEI 224

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G   +   VF+ +  ++++S+N+++ G+   G + E    FR M   G     + ++++L
Sbjct: 225 GCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTML 284

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  + L  G ++HG +L+     D+ + NSL+ +Y+K G++     +FD M  KD+ 
Sbjct: 285 PVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLT 344

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SWN+++   S +   HEAL  F++M R G+ P+ +TFV+LLS C+H G    G+RLFS +
Sbjct: 345 SWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNV 404

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           ++ +G+ P +EHYAC+V++ GR+G  DEA S + E +    S  +WG+LL +C L+GNV 
Sbjct: 405 MQDFGVQPSLEHYACLVDILGRSGKFDEALS-VAENIPMRPSGSIWGSLLNSCRLYGNVA 463

Query: 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + E  A++LFE+EP+N  N+ +L  IY NAG  +DV+RV  M+   G++
Sbjct: 464 LAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMK 512


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 262/452 (57%), Gaps = 14/452 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G      T+ S+L  C  L+ ++ G+++   +  +    N  + S LL L++  G +
Sbjct: 90  LRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKM 149

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  +F  M  R   +  WN++I  YA  G   D+  ++  M +EG+ PD FTF  VLK
Sbjct: 150 EDASYLFGMMEERDVVS--WNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLK 207

Query: 203 ACAGLG--LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           A +G+   +IRV + +H   ++ G+G    +  +L+D YAKC  +  A  ++  +  KD+
Sbjct: 208 A-SGMASDVIRVCQ-IHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDM 265

Query: 261 ISYNSMLTGYIH-HGLLVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHG 316
           IS  +++TGY        +A D+F+ +       D V + S   I AN S L +G Q+H 
Sbjct: 266 ISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHA 325

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHE 373
             L+    +D+ + N+LI +Y+K G++  A   F+ M +K+V+SW S+I    +H   HE
Sbjct: 326 LALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHE 385

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  F++ME +G+ P+ +TF+SLL AC H G    G   F+ M+ KY I PR EH++CMV
Sbjct: 386 AIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMV 445

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L+ R GL++EAY++I  KM  + +  +WGA+L ACY++GN+ + E AA  LF+++P+N 
Sbjct: 446 DLFARGGLLEEAYNLI-NKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLFKMDPENS 504

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            N+ +L  IY  AG  D+  ++ +++ +R L+
Sbjct: 505 VNYVVLADIYAAAGSWDNAWKMRKLMEERNLK 536



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 221/412 (53%), Gaps = 16/412 (3%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           L+ C + KA + G  +H  I TN    N  +S+KL+  Y+  G    A +VFD+M  RT 
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            +  W++ ISGY++ G Y+DA+ ++  M   G + +QFT+  VL+AC GL  ++ G ++ 
Sbjct: 64  VS--WSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQ 121

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
               +  F  +  V +AL+D+++KCG +  A  +F  +  +D++S+N+++  Y   G   
Sbjct: 122 GCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSG 181

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASL----LRIGAQVHGWVLRRGVEWDLCIANSL 333
           ++F +FR M+  G  PD     S+L  + +    +R+  Q+H  +++ G    + ++ SL
Sbjct: 182 DSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRV-CQIHQLIIQLGYGSHISLSGSL 240

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD----HEALIYFEQMERDGVLPD 389
           I  Y+K   L  A  L+  MP KD++S  +++  +++D     +AL  F+++++  +  D
Sbjct: 241 IDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKID 300

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            +   S+ + CA++ S+ VG ++ ++ + K   +  V     ++++Y ++G I +A    
Sbjct: 301 DVILCSMFNICANISSLSVGRQIHALAL-KCKPTYDVAMGNALIDMYAKSGEIKDANRAF 359

Query: 450 VEKMEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
            E ME E + + W +L+  Y  + HG+  +      +   L+P++     LL
Sbjct: 360 NE-ME-EKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLL 409



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 171/385 (44%), Gaps = 36/385 (9%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
             S +Q G++    TF S+L+       V    ++H+LI       +  +S  L+  YA 
Sbjct: 187 FRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAK 246

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED-AIALYFQMEEEGVEPDQFTF 197
              +  AH ++  M  +   +    +L++GYA    Y   A+ L+ ++++  ++ D    
Sbjct: 247 CESLASAHCLYKSMPMKDMISC--TALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVIL 304

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             +   CA +  + VG ++H  A++    +D  + NAL+DMYAK G+I  A   F+ +  
Sbjct: 305 CSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEE 364

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGW 317
           K++IS+ S++TGY  HG   EA  +F+ M   G  P+ +   S+L   +    G    GW
Sbjct: 365 KNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACN--HCGLTGEGW 422

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377
                     C  N++I  Y+   + +    + D   +  ++             EA   
Sbjct: 423 E---------CF-NNMISKYNILPRAEHFSCMVDLFARGGLL------------EEAYNL 460

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLY 436
             +M    + P+   + ++L AC   G++ + E      +  + + P    +Y  + ++Y
Sbjct: 461 INKMN---IKPNASLWGAILGACYIYGNMPLAEE---AAIHLFKMDPENSVNYVVLADIY 514

Query: 437 GRAGLIDEAYSM--IVEKMEFEASP 459
             AG  D A+ M  ++E+   + +P
Sbjct: 515 AAAGSWDNAWKMRKLMEERNLKKAP 539


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 153/447 (34%), Positives = 256/447 (57%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G      +F S+L+ C   +A+  G  +H       L  +  +++ L+R+Y   G I+
Sbjct: 256 QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIE 315

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD+M  R   +  W  +I GYAE    EDA  L+  M+EEG++PD+ T+  ++ A
Sbjct: 316 GARRVFDKMKVRDVVS--WTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    + +  ++H   VR GFG D  V  ALV MYAKCG I  AR VFD +  +D++S+
Sbjct: 374 CASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSW 433

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           ++M+  Y+ +G   EAF+ F  M  N  +PD V   ++L    +   L +G +++   ++
Sbjct: 434 SAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIK 493

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
             +   + + N+LI +  K G +++A ++F++M Q+DVV+WN +I     H    EAL  
Sbjct: 494 ADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDL 553

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F++M ++   P+ +TFV +LSAC+  G V+ G R FS +++  GI P +E Y CMV+L G
Sbjct: 554 FDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLG 613

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +DEA  +++ +M  + +  +W  LL AC ++GN+ + E AA++    EP +   + 
Sbjct: 614 RAGELDEA-ELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYV 672

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
            L  +Y  AG  ++V +V +++  RG+
Sbjct: 673 QLSHMYAAAGMWENVAKVRKVMESRGV 699



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 222/433 (51%), Gaps = 20/433 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + + T+  L + C  L+    G ++   I  +  + N    + L++L++  G + EA Q 
Sbjct: 59  IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQT 118

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD + N+T     WN++I+GYA+LG  ++A AL+ QM +E +EP   TF  VL AC+   
Sbjct: 119 FDSVENKTVVT--WNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPA 176

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +++G++ H   ++ GF  D  +  ALV MY K G +  AR VFD +  +D+ ++N M+ 
Sbjct: 177 GLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIG 236

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEW 325
           GY   G   +AF +F  M   GF P+ ++  SIL   S    L  G  VH   +  G+  
Sbjct: 237 GYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVD 296

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           D+ +A +LI +Y   G ++ A  +FD M  +DVVSW  +I  ++++    +A   F  M+
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +G+ PD +T++ +++ACA    + +   + S +V + G    +     +V++Y + G I
Sbjct: 357 EEGIQPDRITYIHIINACASSADLSLAREIHSQVV-RAGFGTDLLVDTALVHMYAKCGAI 415

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ-----KLFELEPDNEHNFE 497
            +A   + + M      V W A++ A   +G    GE A +     K   +EPD      
Sbjct: 416 KDA-RQVFDAMS-RRDVVSWSAMIGAYVENG---CGEEAFETFHLMKRNNVEPDVVTYIN 470

Query: 498 LLIKIYGNAGRLD 510
           LL    G+ G LD
Sbjct: 471 LL-NACGHLGALD 482


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 250/438 (57%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFAS+L  C   +A+E G ++H  I  + L+ +  + + L+ +Y   G + +A  VF  +
Sbjct: 534 TFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL 593

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R   +  W ++I G A+ GE   AI L++QM+ EG  P + TF  +LK C     +  
Sbjct: 594 QHRDVMS--WTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDE 651

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+KV    +  G+  D  V NAL+  Y+K G +  AR VFD++ ++D++S+N ++ GY  
Sbjct: 652 GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQ 711

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL   A +    M      P+  +  S+L   ++ S L  G +VH  +++R ++ D+ +
Sbjct: 712 NGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRV 771

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +LI +Y+K G   +A  +FD++ +K+VV+WN++I+A   H    +AL +F  ME++G+
Sbjct: 772 GAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGI 831

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  TF S+LSAC H G V  G ++FS M  +YG+ P +EHY C+V L GRA    EA 
Sbjct: 832 KPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAE 891

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           ++I  +M F     VW  LL AC +HGN+ + E AA    +L   N   + LL  +Y  A
Sbjct: 892 TLI-NQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAA 950

Query: 507 GRLDDVERVERMLVDRGL 524
           GR DDV ++ R++  RG+
Sbjct: 951 GRWDDVAKIRRVMEGRGI 968



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 241/452 (53%), Gaps = 20/452 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+ +   T+ S+L  C   KA+E G  +H  I  +    +  I + L+ +YA  G + +
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F  M  R   +  WN++I+GYA   +  +A+ LY QM+ EGV+P + TF  +L AC
Sbjct: 384 ARELFYTMPKRDLIS--WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A       G+ +H D +R G   +G + NAL++MY +CG +++A+ VF+    +D+IS+N
Sbjct: 442 ANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWN 501

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           SM+ G+  HG    A+ +F+ M     +PD +  +S+L+   N   L +G Q+HG +   
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G++ D+ + N+LI +Y + G L  A  +F  +  +DV+SW ++I       +D +A+  F
Sbjct: 562 GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELF 621

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYG 437
            QM+ +G  P   TF S+L  C     +  G+++ + ++   Y +   V +   +++ Y 
Sbjct: 622 WQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYS 679

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NE 493
           ++G + +A   + +KM      V W  ++     +G   +G+TA +  ++++      N+
Sbjct: 680 KSGSMTDARE-VFDKMP-SRDIVSWNKIIAGYAQNG---LGQTAVEFAYQMQEQDVVPNK 734

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +F  L+    +   L++ +RV   +V R L+
Sbjct: 735 FSFVSLLNACSSFSALEEGKRVHAEIVKRKLQ 766



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 231/453 (50%), Gaps = 22/453 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI+    T+ +LL+       ++ G ++H+L     L  +  + + L+ +    G +D A
Sbjct: 224 GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q F   ++R    +  N+LI+  A+ G   +A   Y++M  +GV  ++ T+  +L AC+
Sbjct: 284 KQAFKGTADRDVVVY--NALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G+ +H      G   D  + NAL+ MYA+CGD+ KAR +F  +  +DLIS+N+
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ GY       EA  +++ M   G  P  V    +L   AN+S    G  +H  +LR G
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           ++ +  +AN+L+ +Y + G L +A  +F+    +DV+SWNS+I  H++      A   F+
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+ + + PD++TF S+LS C +  ++++G+++   + E  G+   V     ++N+Y R 
Sbjct: 522 EMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRC 580

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE------ 493
           G + +A ++       +   + W A++  C   G     +  A +LF  +  NE      
Sbjct: 581 GSLQDARNVFHSLQHRDV--MSWTAMIGGCADQGE----DMKAIELF-WQMQNEGFRPVK 633

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
             F  ++K+  ++  LD+ ++V   +++ G E 
Sbjct: 634 STFSSILKVCTSSACLDEGKKVIAYILNSGYEL 666



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 191/363 (52%), Gaps = 9/363 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
            +  T+ +LL+ C + + +    ++H  +    +  +  +S+ L+ +Y     + +AHQV
Sbjct: 25  TERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F +M  R   +  WNSLIS YA+ G  + A  L+ +M+  G  P++ T+  +L AC    
Sbjct: 85  FKEMPRRDVIS--WNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G+K+H   ++ G+  D  V N+L+ MY KCGD+ +AR VF  I  +D++SYN+ML 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
            Y     + E   +F  M   G  PD V   ++L      S+L  G ++H   +  G+  
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D+ +  +L+ +  + G +D A   F     +DVV +N++I A   H  + EA   + +M 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            DGV  +  T++S+L+AC+   +++ G+ + S + E  G S  V+    ++++Y R G +
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDL 381

Query: 443 DEA 445
            +A
Sbjct: 382 PKA 384



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 153/291 (52%), Gaps = 9/291 (3%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
            E ++ T+  +L+ C    L+   +++H   V    G D F+ N L++MY KC  ++ A 
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NAS 306
            VF  +  +D+IS+NS+++ Y   G   +AF +F  M   GF P+ +   SIL    + +
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G ++H  +++ G + D  + NSL+ +Y K G L +A  +F  +  +DVVS+N+++ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            +++     E L  F QM  +G+ PD +T+++LL A      +  G+R+  + VE+ G++
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GLN 261

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             +     +V +  R G +D A      K   +   VV+ AL+ A   HG+
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAF--KGTADRDVVVYNALIAALAQHGH 310


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 157/447 (35%), Positives = 259/447 (57%), Gaps = 30/447 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     TF +LL  C   +    G ++H  +    + KN  + ++L+ +Y+  G ++
Sbjct: 271 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 330

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A ++F++M+ R A++  WNS+I GY + GE ++A+ L+ QM+  G++PD F+   +L +
Sbjct: 331 YAKEIFNRMAERNAYS--WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS- 262
           C  L   + G ++H   VR     +G +   LVDMYAKCG +  A  V+D+   KD  + 
Sbjct: 389 CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTA 448

Query: 263 -YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
            +NS+L GY + GL  E+F+ F  M+ +  + D + + +I+                   
Sbjct: 449 LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVN------------------ 490

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
                L +  +L+ +YSK G + +A  +FD+M  K++VSWN++I  +SK     EALI +
Sbjct: 491 ----LLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILY 546

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M + G+ P+ +TF+++LSAC+H G V+ G R+F+ M E Y I  + EHY CMV+L GR
Sbjct: 547 EEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGR 606

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG +++A    VEKM  E     WGALL AC +H ++ MG  AAQ+LFEL+P N   + +
Sbjct: 607 AGRLEDAKE-FVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVI 665

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           +  IY  AGR  +VE + +M+  +G++
Sbjct: 666 MSNIYAAAGRWKEVEDIRQMMKMKGVK 692



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 225/425 (52%), Gaps = 26/425 (6%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE---AHQVFD 150
           ++SL++ C    + + G  +H  + +N    +  + +K+L LYA  G +D+   A ++F+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  R   A  WN++I  YA + +Y +A  ++ +M + GV PD FTF   L+ C  L   
Sbjct: 134 EMPERNLTA--WNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSR 191

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G++VH   +  GF  D FV NAL+DMYAKC D      VFD +G ++ +++NS+++  
Sbjct: 192 DGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE 251

Query: 271 IHHGLLVEAFDIFRGM--ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
              G   +A  +F  M    +G  PD    +++L   AN      G Q+H  ++R  +  
Sbjct: 252 AQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITK 311

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           ++ +   L+ +YS+ G+L+ A  +F+ M +++  SWNS+I  + ++    EAL  F+QM+
Sbjct: 312 NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 371

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV----EKYGISPRVEHYACMVNLYGR 438
            +G+ PD  +  S+LS+C  L   + G  L + +V    E+ GI   V     +V++Y +
Sbjct: 372 LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV-----LVDMYAK 426

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHNFE 497
            G +D A+ +  + ++ + +  +W ++L     + N  + + +     E LE D E++  
Sbjct: 427 CGSMDYAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFLEMLESDIEYDVL 483

Query: 498 LLIKI 502
            ++ I
Sbjct: 484 TMVTI 488



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 41/214 (19%)

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           + Y+S++   I          I   MI NG++PD   ++ IL                  
Sbjct: 72  LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKIL------------------ 113

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACW---LFDHMPQKDVVSWNSIIHAHSK--DH-EA 374
                         ++Y++ G LD  C+   LF+ MP++++ +WN++I A+++  D+ EA
Sbjct: 114 --------------MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEA 159

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F++M + GV PD+ TF S L  C  L S   G+++ S ++   G          +++
Sbjct: 160 WGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI-ACGFKGDTFVGNALID 218

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           +Y +    DE   + V     E + V W +++ A
Sbjct: 219 MYAKCD--DEESCLKVFDEMGERNQVTWNSIISA 250


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 255/452 (56%), Gaps = 12/452 (2%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           ES   + +   T+ F S L +C  L  V    ++H  I TN   +N  +++KLL +Y   
Sbjct: 42  ESECSHVLHYDTKRFRSSLLSCRNLFQVR---QVHAQIATNGAFRNLAVANKLLYMYVER 98

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +++A ++FD MS R  ++  W+ ++ GYA++G +     ++ ++   G   D ++ P 
Sbjct: 99  GALEDAQELFDGMSKRHPYS--WSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPV 156

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           V++AC  L  ++ G  +H   ++ G  +  FV   LVDMYA+C  +  A  +F ++  +D
Sbjct: 157 VIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRD 216

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           L ++  M+      G+ VE+   F  M   G  PD VA+ +++   A    +     +H 
Sbjct: 217 LATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHA 276

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           ++   G   D+ +  ++I +Y+K G ++ A W+FD M  ++V++W+++I A   H +  +
Sbjct: 277 YINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEK 336

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F  M R G+LP+ +TFVSLL AC+H G ++ G+R FS M ++YG++P V+HY CMV
Sbjct: 337 ALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMV 396

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GRAG +DEA  MI E M  E   V+WGALL AC +H ++ + E  A+ L +L+    
Sbjct: 397 DLLGRAGRLDEALEMI-EGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKP 455

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++ LL  IY NAG+ +D+ +   ++   GL 
Sbjct: 456 GHYVLLSNIYANAGKWEDMAKTRDLMTKGGLR 487


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 174/517 (33%), Positives = 281/517 (54%), Gaps = 34/517 (6%)

Query: 37  QISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQN----------- 85
           +I +N  +T ++   ++ T L    K F +T + + +S+I +L     +           
Sbjct: 17  KIHKNHFSTTAAATNTNLTTLF--NKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMR 74

Query: 86  --GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
              I     TF   +++C  L  +  G + H+         +  +SS L+ +Y+  G + 
Sbjct: 75  KLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLS 134

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---------EEEGVEPDQ 194
            A  +FD++  R      W SLI+GY +  +  +A+ ++ +          EE G   D 
Sbjct: 135 NARVLFDEIPRRNIVT--WTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDS 192

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
                VL AC+ +    V E VH  A++ G      V N L+D YAKCG++  +R VFD 
Sbjct: 193 VAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDD 252

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRI 310
           +  KD++S+NSM+  Y  +GL  +AF++F GM+   G   + V +S++L   A+   LR+
Sbjct: 253 MAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV 312

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G  +H  V++ G   ++ +A S+I +Y K G+ + A   FD M +K+V SW ++I     
Sbjct: 313 GMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGM 372

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H    EAL  F QM   GV P+++TF+S+L+AC+H G ++ G R F+ M  +Y + P VE
Sbjct: 373 HGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVE 432

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HY CMV+L GRAG I EAY++I + M+     V+WG+LL AC +H +V + E +A++LF+
Sbjct: 433 HYGCMVDLLGRAGYIKEAYNLI-KSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFK 491

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           L+P N   + LL  IY +AGR  DVER+  ++ DRGL
Sbjct: 492 LDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGL 528


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 257/450 (57%), Gaps = 9/450 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +Q  +   ++G+     + + +   C ++K    G+++H L   +    +  + + +L L
Sbjct: 338 MQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDL 397

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y     + EA+ VF +M  R + +  WN++I+   +   YED IA   +M   G+EPD F
Sbjct: 398 YGKCKALVEAYLVFQEMEQRDSVS--WNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDF 455

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T+  VLKACAGL  +  G  VH  A++ G G D FV + +VDMY KCG I +A+ + DRI
Sbjct: 456 TYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRI 515

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
           G ++L+S+NS+++G+       EA   F  M+  G  PD    +++L   AN + + +G 
Sbjct: 516 GGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGK 575

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           Q+HG ++++ +  D  I+++L+ +Y+K G +  +  +F+   + D VSWN++I     H 
Sbjct: 576 QIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHG 635

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           +  EAL  FE+M+R  V+P+H TFV++L AC+H+G +  G + F +M  +Y + P++EH+
Sbjct: 636 QGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHF 695

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           ACMV++ GR+    EA   I   M  EA  VVW  LL  C +  +V + ETAA  +  L+
Sbjct: 696 ACMVDILGRSKGPQEALEFI-RSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLD 754

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERML 519
           PD+   + LL  +Y  +G+  DV R  R++
Sbjct: 755 PDDASVYILLSNVYAGSGKWVDVSRTRRLM 784



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 192/368 (52%), Gaps = 9/368 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ +   T A LL++C  L  +  G+++H L     L  +    S L+ +Y     +D
Sbjct: 144 RRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLD 203

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + F  M  R + +  W + I+G  +  +Y   + L+ QM+  G+   Q  +    ++
Sbjct: 204 DALRFFHGMGERNSVS--WGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRS 261

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +    ++H  A++  F  D  V  A+VD+YAK G++V AR  F  + + ++ + 
Sbjct: 262 CAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETC 321

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N+M+ G +  GL  EA  +F+ M  +G   D +++S + +  + ++    G QVH   ++
Sbjct: 322 NAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVK 381

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G + D+C+ N+++ +Y K   L +A  +F  M Q+D VSWN+II A  ++    + + +
Sbjct: 382 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAH 441

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             +M R G+ PD  T+ S+L ACA L S++ G  +    + K G+       + +V++Y 
Sbjct: 442 LNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAI-KSGLGLDAFVSSTVVDMYC 500

Query: 438 RAGLIDEA 445
           + G I EA
Sbjct: 501 KCGAITEA 508



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 216/442 (48%), Gaps = 30/442 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V    +AS   +C  +  +    +LH     N+   ++ + + ++ +YA  G + +A
Sbjct: 247 GLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDA 306

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F  + +        N+++ G    G   +A+ L+  M   GV  D  +   V  ACA
Sbjct: 307 RRAFIGLPHHNVET--CNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACA 364

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G +VH  AV+ GF  D  V NA++D+Y KC  +V+A  VF  +  +D +S+N+
Sbjct: 365 EVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNA 424

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++     +    +       M+ +G +PD     S+L   A    L  G  VHG  ++ G
Sbjct: 425 IIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSG 484

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  ++++++ +Y K G + +A  L D +  +++VSWNSII   S   +  EA  +F 
Sbjct: 485 LGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFS 544

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYG 437
           +M   GV PDH T+ ++L  CA+L ++++G+++   ++++  +    + Y  + +V++Y 
Sbjct: 545 EMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYA 601

Query: 438 RAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LE 489
           + G + ++  M     K++F    V W A++    LHG        A ++FE      + 
Sbjct: 602 KCGNMPDSLLMFEKARKLDF----VSWNAMICGYALHGQ----GLEALEMFERMQRANVV 653

Query: 490 PDNEHNFELLIKIYGNAGRLDD 511
           P N   F  +++   + G LDD
Sbjct: 654 P-NHATFVAVLRACSHVGLLDD 674



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 202/446 (45%), Gaps = 48/446 (10%)

Query: 89  VQTETFASLLETCYQL--KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           V T TF+ L + C      A+  G   H  +  +       +S+ LL++YA  G    AH
Sbjct: 15  VATATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAH 74

Query: 147 QVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYED 177
            VFD M +R   ++                              WN+LISGY + G + +
Sbjct: 75  GVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRN 134

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           ++ L  +M   GV  D+ T   +LK+C GL  + +G ++H  AV+ G   D    +ALVD
Sbjct: 135 SVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVD 194

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-PDPV 296
           MY KC  +  A   F  +G ++ +S+ + + G + +       ++F  M   G     P 
Sbjct: 195 MYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPA 254

Query: 297 AISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
             S+  + A++  L    Q+H   ++     D  +  +++ VY+K G L  A   F  +P
Sbjct: 255 YASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLP 314

Query: 355 QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
             +V + N+++    +     EA+  F+ M R GV  D ++   + SACA +     G +
Sbjct: 315 HHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +  + V K G    V     +++LYG+   + EAY ++ ++ME +   V W A++ A  L
Sbjct: 375 VHCLAV-KSGFDVDVCVRNAILDLYGKCKALVEAY-LVFQEME-QRDSVSWNAIIAA--L 429

Query: 472 HGNVCMGETAAQKLFE-----LEPDN 492
             N C  +T A  L E     +EPD+
Sbjct: 430 EQNECYEDTIAH-LNEMLRSGMEPDD 454



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 135/247 (54%), Gaps = 5/247 (2%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +  +  I  L   +++G+     T+ S+L+ C  L+++E+G+ +H     + L  +  +S
Sbjct: 433 ECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVS 492

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           S ++ +Y   G I EA ++ D++  +   +  WNS+ISG++   + E+A   + +M + G
Sbjct: 493 STVVDMYCKCGAITEAQKLHDRIGGQELVS--WNSIISGFSLTKQSEEAQRFFSEMLDMG 550

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V+PD FT+  VL  CA L  I +G+++H   ++     D ++ + LVDMYAKCG++  + 
Sbjct: 551 VKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSL 610

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--- 306
            +F++    D +S+N+M+ GY  HG  +EA ++F  M      P+     ++L   S   
Sbjct: 611 LMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVG 670

Query: 307 LLRIGAQ 313
           LL  G Q
Sbjct: 671 LLDDGCQ 677


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 264/482 (54%), Gaps = 14/482 (2%)

Query: 44  TTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
            T  + P+ S   ++    A     L+AL+ I Q L+ +    ++    + +  L  C  
Sbjct: 298 NTLPNPPRQSYNAIIVGY-ARQDQGLKALE-IFQSLQRTY---LSFDEISLSGALTACSV 352

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           +K    GI+LH L     L  N  +++ +L +Y   G + EA  +FD M  R A +  WN
Sbjct: 353 IKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVS--WN 410

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I+ + +  E    ++L+  M    +EPD FT+  V+KACAG   +  G ++H   V+ 
Sbjct: 411 AIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKS 470

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G G D FV +ALVDMY KCG +++A  + DR+  K  +S+NS+++G+        A   F
Sbjct: 471 GMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYF 530

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M+  G  PD    +++L   AN + + +G Q+H  +L+  +  D+ IA++L+ +YSK 
Sbjct: 531 SQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKC 590

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G +  +  +F+  P++D V+W+++I A   H    +A+  FE+M+   V P+H  F+S+L
Sbjct: 591 GNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVL 650

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            ACAH+G V  G   F +M   YG+ P +EHY+CMV+L GR+  ++EA  +I E M FEA
Sbjct: 651 RACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLI-ESMHFEA 709

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
             V+W  LL  C + GNV + E A   L +L+P +   + LL  +Y N G   +V ++  
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRS 769

Query: 518 ML 519
           ++
Sbjct: 770 IM 771



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 208/380 (54%), Gaps = 11/380 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+ +L+ C  ++    G+++H L        +    S L+ +Y+    +D A ++F +M
Sbjct: 140 TFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREM 199

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      W+++I+GY +   + + + L+  M + G+   Q T+  V ++CAGL   ++
Sbjct: 200 PERNLVC--WSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKL 257

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++  F +D  +  A +DMYAKC  +  A  VF+ + N    SYN+++ GY  
Sbjct: 258 GTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYAR 317

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCI 329
               ++A +IF+ +       D +++S  L   S+++    G Q+HG  ++ G+ +++C+
Sbjct: 318 QDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICV 377

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
           AN+++ +Y K G L +AC +FD M ++D VSWN+II AH ++ E    L  F  M R  +
Sbjct: 378 ANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTM 437

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  T+ S++ ACA   ++  G  +   +V K G+       + +V++YG+ G++ EA 
Sbjct: 438 EPDDFTYGSVVKACAGQQALNYGMEIHGRIV-KSGMGLDWFVGSALVDMYGKCGMLMEA- 495

Query: 447 SMIVEKMEFEASPVVWGALL 466
             I +++E E + V W +++
Sbjct: 496 EKIHDRLE-EKTTVSWNSII 514



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 220/412 (53%), Gaps = 23/412 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   T+AS+  +C  L A + G +LH     +    +  I +  L +YA    + +A
Sbjct: 234 GMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDA 293

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+ + N    ++  N++I GYA   +   A+ ++  ++   +  D+ +    L AC+
Sbjct: 294 WKVFNTLPNPPRQSY--NAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACS 351

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G ++H  AV+ G GF+  V N ++DMY KCG +V+A T+FD +  +D +S+N+
Sbjct: 352 VIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNA 411

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++  +  +  +V+   +F  M+ +  +PD     S++   A    L  G ++HG +++ G
Sbjct: 412 IIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSG 471

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  + ++L+ +Y K G L +A  + D + +K  VSWNSII   S   +   A  YF 
Sbjct: 472 MGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFS 531

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM   GV+PD+ T+ ++L  CA++ ++++G+++ + ++ K  +   V   + +V++Y + 
Sbjct: 532 QMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQIL-KLNLHSDVYIASTLVDMYSKC 590

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFE 487
           G + ++      ++ FE +P    V W A++ A   HG+   GE A  KLFE
Sbjct: 591 GNMQDS------RLMFEKTPKRDYVTWSAMICAYAYHGH---GEQAI-KLFE 632



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 199/413 (48%), Gaps = 42/413 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+ +L+ C  LKA+  G + H  +          +++ L++ Y     ++ A +VFD+M
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-------------------- 192
            +R   +  WN++I GYAE+G    A +L+  M E  V                      
Sbjct: 68  PHRDVIS--WNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 193 -----------DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
                      D  TF  VLKAC+G+    +G +VH  A++ GF  D    +ALVDMY+K
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           C  +  A  +F  +  ++L+ +++++ GY+ +   +E   +F+ M+  G        +S+
Sbjct: 186 CKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
               A  S  ++G Q+HG  L+    +D  I  + + +Y+K  ++  A  +F+ +P    
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 359 VSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            S+N+II  +++  +   AL  F+ ++R  +  D ++    L+AC+ +     G +L  +
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGL 365

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
            V K G+   +     ++++YG+ G + EA + I + ME     V W A++ A
Sbjct: 366 AV-KCGLGFNICVANTILDMYGKCGALVEACT-IFDDME-RRDAVSWNAIIAA 415



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 37/256 (14%)

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           +FTF  +L+ C+ L  +  G++ H   +   F    +V N LV  Y K  ++  A  VFD
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 254 RIGNKDLISYNSMLTG-------------------------------YIHHGLLVEAFDI 282
           R+ ++D+IS+N+M+ G                               Y+H+G+  ++ +I
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 283 FRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M       D    S +L   S +    +G QVH   ++ G E D+   ++L+ +YSK
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSL 396
             KLD A  +F  MP++++V W+++I  + ++    E L  F+ M + G+     T+ S+
Sbjct: 186 CKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 397 LSACAHLGSVKVGERL 412
             +CA L + K+G +L
Sbjct: 246 FRSCAGLSAFKLGTQL 261


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 251/445 (56%), Gaps = 10/445 (2%)

Query: 87   ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
            + V   T  + +  C  + ++  G  LH         +    ++ LL +Y+  G +++A 
Sbjct: 650  VGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAI 709

Query: 147  QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            Q F++M  +T  +  W SLI+ Y   G Y+DAI L+++ME +GV PD ++   VL ACA 
Sbjct: 710  QAFEKMGQKTVVS--WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACAC 767

Query: 207  LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
               +  G  VH    +        V NAL+DMYAKCG + +A  VF +I  KD++S+N+M
Sbjct: 768  GNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTM 827

Query: 267  LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGV 323
            + GY  + L  EA  +F  M      PD + ++ +L A  SL  L IG  +HG +LR G 
Sbjct: 828  IGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGY 886

Query: 324  EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
              +L +AN+LI +Y K G L  A  LFD +P+KD+++W  +I     H   +EA+  F++
Sbjct: 887  SSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQK 946

Query: 381  MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
            M   G+ PD +TF S+L AC+H G +  G   F+ M+ +  + P++EHYACMV+L  R G
Sbjct: 947  MRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTG 1006

Query: 441  LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
             + +AY++I E M  +    +WGALL  C +H +V + E  A+ +FELEPDN   + LL 
Sbjct: 1007 NLSKAYNLI-ETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLA 1065

Query: 501  KIYGNAGRLDDVERVERMLVDRGLE 525
             IY  A + ++V+++   +  RGL+
Sbjct: 1066 NIYAEAEKWEEVKKLRERIGKRGLK 1090



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 232/425 (54%), Gaps = 20/425 (4%)

Query: 36  QQISRNR-ITTFSSYPKSSP-----TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV 89
           QQ SR   ++++   P+SS        L  N K     ++  L + ++ L  S ++ + +
Sbjct: 392 QQPSRKYFLSSYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDL 451

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
               ++S+L+ C + K ++ G  +H +I +N +     + +KL+ +Y + G + E  ++F
Sbjct: 452 NA--YSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIF 509

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D + +     F WN ++S YA++G+Y ++I L+ +M++ G+  + +TF  +LK  A LG 
Sbjct: 510 DHILSDNK-VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLG- 567

Query: 210 IRVGE--KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
            RVGE  ++H    + GFG    V+N+L+  Y K G++  A  +FD +G++D++S+NSM+
Sbjct: 568 -RVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMI 626

Query: 268 TGYIHHGLLVEAFDIFRGMIL--NGFDPDPVAIS-SILANASLLRIGAQVHGWVLRRGVE 324
           +G + +G    A + F  M++   G D   +  S +  AN   L +G  +HG  ++    
Sbjct: 627 SGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS 686

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
            ++   N+L+ +YSK G L+ A   F+ M QK VVSW S+I A+ ++    +A+  F +M
Sbjct: 687 REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
           E  GV PD  +  S+L ACA   S+  G  + +  + K  ++  +     ++++Y + G 
Sbjct: 747 ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN-YIRKNNMALCLPVSNALMDMYAKCGS 805

Query: 442 IDEAY 446
           ++EAY
Sbjct: 806 MEEAY 810



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 86   GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
            G++    +  S+L  C    +++ G  +H  I  N +     +S+ L+ +YA  G ++EA
Sbjct: 750  GVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEA 809

Query: 146  HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + VF Q+  +   +  WN++I GY++     +A+ L+ +M++E   PD  T   +L AC 
Sbjct: 810  YLVFSQIPVKDIVS--WNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACG 866

Query: 206  GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             L  + +G  +H   +R G+  +  V NAL+DMY KCG +V AR +FD I  KDLI++  
Sbjct: 867  SLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTV 926

Query: 266  MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGW------VL 319
            M++G   HGL  EA   F+ M + G  PD +  +SIL   S    G    GW      + 
Sbjct: 927  MISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS--HSGLLNEGWGFFNSMIS 984

Query: 320  RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSII 365
               +E  L     ++ + ++ G L +A  L + MP K D   W +++
Sbjct: 985  ECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALL 1031


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 260/452 (57%), Gaps = 9/452 (1%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E  +Q  I V   T  ++L  C ++  +    +LH     +  + ++ +++  +  YA  
Sbjct: 225 EMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKC 284

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G++  A +VF  M  +T  +  WN+LI G A+ G+   A+ LY QM   G+ PD FT   
Sbjct: 285 GMLICAERVFYSMETKTVNS--WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGS 342

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L A A L  +R G++VH   +R G   D F+  +L+ +Y  CG+   AR +FD +  K 
Sbjct: 343 LLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKS 402

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
            +S+N+M++GY  +GL  +A  +FR ++ +GF P  +A+ S+L   +  S LR+G + H 
Sbjct: 403 SVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHC 462

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           + L+  +  D+ +A S I +Y+K G + ++  +FD +  KD+ SWN+II A   H    E
Sbjct: 463 YALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEE 522

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           ++  FE+M + G +PD  TF+ +L+ C+H G V+ G + F+ M   +GI P++EHYAC++
Sbjct: 523 SIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVM 582

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++ GRAG +D+A  + V +M  +    VW +LL  C   G + +G+  A+KL ELEP N 
Sbjct: 583 DMLGRAGRLDDALRL-VHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNV 641

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            N+  L  +Y  +GR DDV RV +M+ D GL+
Sbjct: 642 ENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQ 673



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 240/483 (49%), Gaps = 63/483 (13%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T  ++L  C +   V+ GI++H L     L ++  +++ L+ +Y+  G + 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLK 202
           EA  +FD+ + + A +  WN++I G    G   +A  L+ +M+ +E +E ++ T   +L 
Sbjct: 187 EAQMLFDKNNRKNAVS--WNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  +  +R  +++H  ++R GF +D  V N  V  YAKCG ++ A  VF  +  K + S
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS 304

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-ILANASL--LRIGAQVHGWVL 319
           +N+++ G   +G   +A +++  M  +G  PD   I S +LA+A L  LR G +VHG+VL
Sbjct: 305 WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           R G+E D  I  SL+ +Y   G+   A  LFD M +K  VSWN++I  +S++    +ALI
Sbjct: 365 RHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER-----LFSVMVEKYGISPRVEHYAC 431
            F ++  DG  P  +  VS+L AC+   ++++G+      L ++++E   +       AC
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFV-------AC 477

Query: 432 -MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN---------------- 474
             +++Y ++G I E+ S+       + +   W A++ A  +HG+                
Sbjct: 478 STIDMYAKSGCIKESRSVFDGLKNKDLAS--WNAIIAAYGVHGDGEESIELFERMRKVGQ 535

Query: 475 ------------VCMGE----------TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
                       VC                Q    +EP  EH +  ++ + G AGRLDD 
Sbjct: 536 MPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEH-YACVMDMLGRAGRLDDA 594

Query: 513 ERV 515
            R+
Sbjct: 595 LRL 597



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 204/383 (53%), Gaps = 14/383 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +++ C        G  +H ++    L  +  + + L+ +Y  FG +D A +VF  M
Sbjct: 33  TFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYM 92

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGLI 210
             R   +  WNS+ISG++E G  +D   +  +M   EEG+ PD  T   VL  CA    +
Sbjct: 93  PVRNLVS--WNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDV 150

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           ++G ++H  AV+ G   D  V N+LVDMY+KCG + +A+ +FD+   K+ +S+N+M+ G 
Sbjct: 151 QMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGL 210

Query: 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWD 326
              G + EAF++FR M +    + + V + +IL      S LR   ++HG+ +R G ++D
Sbjct: 211 CTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYD 270

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
             +AN  +  Y+K G L  A  +F  M  K V SWN++I   +++    +AL  + QM  
Sbjct: 271 ELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTY 330

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G++PD  T  SLL A AHL S++ G+ +    V ++G+         +++LY   G   
Sbjct: 331 SGLVPDWFTIGSLLLASAHLKSLRYGKEVHG-FVLRHGLEIDSFIGISLLSLYIHCGESS 389

Query: 444 EAYSMIVEKMEFEASPVVWGALL 466
            A  ++ + ME E S V W A++
Sbjct: 390 SA-RLLFDGME-EKSSVSWNAMI 410



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 160/314 (50%), Gaps = 21/314 (6%)

Query: 175 YEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           Y DAI ++ ++  +     D FTFP V+KAC G     +GE +H   ++ G   D FV N
Sbjct: 11  YSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGN 70

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN--GF 291
           AL+ MY K G +  A  VF  +  ++L+S+NS+++G+  +G   + FD+   M+    G 
Sbjct: 71  ALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGL 130

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   + ++L   A    +++G ++HG  ++ G+  D+ + NSL+ +YSK G L +A  
Sbjct: 131 LPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQM 190

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME-RDGVLPDHLTFVSLLSACAHLG 404
           LFD   +K+ VSWN++I          EA   F +M+ ++ +  + +T +++L AC  + 
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS 250

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA----YSMIVEKMEFEASPV 460
            ++  + L    + ++G           V  Y + G++  A    YSM  + +       
Sbjct: 251 QLRSLKELHGYSI-RHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVN------ 303

Query: 461 VWGALLYACYLHGN 474
            W AL+  C  +G+
Sbjct: 304 SWNALIGGCAQNGD 317


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 250/446 (56%), Gaps = 10/446 (2%)

Query: 86   GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
            G+ V   T  S+L     +  +  G  LH         +    S+ LL +Y+  G ++ A
Sbjct: 566  GVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 625

Query: 146  HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +VF +M + T  +  W S I+ Y   G Y DAI L+ +M+ +GV PD +T   ++ ACA
Sbjct: 626  TEVFVKMGDTTIVS--WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA 683

Query: 206  GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                +  G  VH   ++ G G +  V NAL++MYAKCG + +AR VF +I  KD++S+N+
Sbjct: 684  CSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNT 743

Query: 266  MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
            M+ GY  + L  EA ++F  M    F PD + ++ +L   A  + L  G ++HG +LRRG
Sbjct: 744  MIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRG 802

Query: 323  VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
               DL +A +L+ +Y+K G L  A  LFD +P+KD++SW  +I     H   +EA+  F 
Sbjct: 803  YFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN 862

Query: 380  QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            +M   G+ PD  +F  +L+AC+H G +  G + F+ M  + G+ P++EHYAC+V+L  R 
Sbjct: 863  EMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARM 922

Query: 440  GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
            G + +AY  I E M  +    +WG LL  C +H +V + E  A+ +FELEPDN   + +L
Sbjct: 923  GNLSKAYKFI-ESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVL 981

Query: 500  IKIYGNAGRLDDVERVERMLVDRGLE 525
              +Y  A + ++V+++ + +  RG +
Sbjct: 982  ANVYAEAEKWEEVKKLRKRMQKRGFK 1007



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 207/359 (57%), Gaps = 9/359 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++ S+L+ C + K++E G ++H +I +N +  ++ + +KL+ +Y   G + +  ++FD++
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N   F   WN L+S YA++G + ++++L+ +M++ GV  + +TF  VLK  A LG ++ 
Sbjct: 431 MNDKVFL--WNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 488

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH   ++ GFG +  V+N+L+  Y K G +  A  +FD +   D++S+NSM+ G + 
Sbjct: 489 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G      +IF  M++ G + D   + S+L   AN   L +G  +HG+ ++     ++  
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVF 608

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
           +N+L+ +YSK G L+ A  +F  M    +VSW S I A+ ++    +A+  F++M+  GV
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            PD  T  S++ ACA   S+  G  + S ++ K G+   +     ++N+Y + G ++EA
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRDVHSYVI-KNGMGSNLPVTNALINMYAKCGSVEEA 726



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 228/439 (51%), Gaps = 25/439 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  +L+    L  V+   ++H  +       N  + + L+  Y  FG ++ A
Sbjct: 465 GVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESA 524

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H +FD++S     +  WNS+I+G    G   + + ++ QM   GVE D  T   VL A A
Sbjct: 525 HNLFDELSEPDVVS--WNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWA 582

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G + +G  +H   V+  F  +    N L+DMY+KCG++  A  VF ++G+  ++S+ S
Sbjct: 583 NIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTS 642

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
            +  Y+  GL  +A  +F  M   G  PD   ++SI+   A +S L  G  VH +V++ G
Sbjct: 643 TIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNG 702

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           +  +L + N+LI +Y+K G +++A  +F  +P KD+VSWN++I  +S++   +EAL  F 
Sbjct: 703 MGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFL 762

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC-MVNLYGR 438
            M++    PD +T   +L ACA L ++  G  +   ++ +   S    H AC +V++Y +
Sbjct: 763 DMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAK 819

Query: 439 AGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLH--GNVCMGETAAQKLFELEPDN 492
            GL      +++ ++ F+  P    + W  ++    +H  GN  +      ++  +EPD 
Sbjct: 820 CGL------LVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD- 872

Query: 493 EHNFELLIKIYGNAGRLDD 511
           E +F +++    ++G L++
Sbjct: 873 ESSFSVILNACSHSGLLNE 891


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 260/442 (58%), Gaps = 9/442 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +ET+ +L+  C  LK++    K+   +  + L  ++ + +++L ++   G++ +A ++
Sbjct: 129 MDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M  +   +  WN++I G  + G+Y +A  L+  M ++  +     F  +++A AGLG
Sbjct: 189 FDEMPEKNILS--WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLG 246

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           LI  G ++H  +++ G G D FV  AL+DMY+KCG I  A+ VFD++  K  + +NS++ 
Sbjct: 247 LIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIA 306

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           GY  HG   EA  ++  M  +G   D    S I+   A  + L    Q H  ++R G   
Sbjct: 307 GYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGL 366

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D+    +L+ +YSK G+++ A  +FD MP K+V+SWN++I     H +  EA+  FE+M 
Sbjct: 367 DIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +G++P+H+TF+++LSAC++ G    G  +F  M   + I PR  HYACM+ L GR GL+
Sbjct: 427 HEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLL 486

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           DEA+++I +   F+ +  +W ALL AC +H N  +G+ AA+KL+ + P+   N+ +L+ I
Sbjct: 487 DEAFALI-KDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y  +GRL++   V + L  RGL
Sbjct: 546 YNRSGRLEEAAAVIQTLKRRGL 567



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLYATFG 140
           +G+ +   TF+ ++  C +L ++EH  + H      L+R   G+    ++ L+ LY+ +G
Sbjct: 327 SGVKIDNFTFSIIIRICARLASLEHAKQAH----AGLVRHGFGLDIVANTALVDLYSKWG 382

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            I++A  VFD M ++   +  WN+LI+GY   G   +A+ ++ +M  EG+ P+  TF  V
Sbjct: 383 RIEDAKHVFDMMPHKNVIS--WNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 201 LKACAGLGLIRVGEKV 216
           L AC+  GL   G ++
Sbjct: 441 LSACSYSGLSDRGWEI 456


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 256/447 (57%), Gaps = 12/447 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I+    TF  +   C  L+ +      H  +    L  +    + ++ +Y   G    A 
Sbjct: 113 ISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVAR 172

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACA 205
           +VFD+++ +   +  WNSL+SGYA+LG   +A+ ++ ++ EE G EPD+ +   VL AC 
Sbjct: 173 KVFDEITEKDLVS--WNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG + +G  V    V  G   + ++ +AL+ MY+KCG++V +R +FD + ++D I++N+
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
            ++ Y  +G+  EA  +F  M  NG DP+ V ++++L   A+   L +G Q+  +   RG
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRG 350

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           ++ D+ +A +LI +Y+K G L+ A  +F+ MP+K+  SWN++I A   H K  EAL  FE
Sbjct: 351 LQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFE 410

Query: 380 QMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           +M  +G    P+ +TFVSLLSAC H G V  G RLF +M   +G+ P++EHY+CMV+L  
Sbjct: 411 RMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLS 470

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + EA+  ++EKM  +   V  GAL  AC    NV +GE   Q L EL+P N  N+ 
Sbjct: 471 RAGHLYEAWD-VIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYI 529

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  KIY N    DD  R+  ++ + G+
Sbjct: 530 ISSKIYENLNMWDDAARMRALMRENGV 556



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 194/360 (53%), Gaps = 21/360 (5%)

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           +Y   + LY QM+   + P+ FTFP V  ACA L  IR+    H +  + G   D   +N
Sbjct: 97  DYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVN 156

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF-RGMILNGFD 292
           ++V MY +CG+   AR VFD I  KDL+S+NS+L+GY   G   EA ++F R    +GF+
Sbjct: 157 SMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFE 216

Query: 293 PDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           PD +++ S+L        L +G  V G+V+ RG++ +  I ++LI +YSK G+L  +  +
Sbjct: 217 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRI 276

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD MP +D ++WN+ I A++++    EA+  F  M+ +GV P+ +T  ++LSACA +G++
Sbjct: 277 FDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGAL 336

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +G+++      + G+   +     ++++Y + G ++ A  +  +      +   W A++
Sbjct: 337 DLGKQMDEYATHR-GLQHDIFVATALIDMYAKCGSLESAQRVFNDMP--RKNDASWNAMI 393

Query: 467 YACYLHGNVCMGETAAQKLFELEPD-------NEHNFELLIKIYGNAGRLDDVERVERML 519
            A   HG        A  LFE   D       N+  F  L+    +AG +D+  R+  M+
Sbjct: 394 SALASHGKA----KEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMM 449



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 31/366 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G      +  S+L  C +L  +E G  +   +    ++ N  I S L+ +Y+  G + 
Sbjct: 212 ESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELV 271

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + ++FD M +R      WN+ IS YA+ G  ++AI+L+  M+E GV+P++ T   VL A
Sbjct: 272 SSRRIFDGMPSRDFIT--WNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSA 329

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G + +G+++   A   G   D FV  AL+DMYAKCG +  A+ VF+ +  K+  S+
Sbjct: 330 CASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASW 389

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N+M++    HG   EA  +F  M   G    P  I+ +    SLL   A VH  ++  G 
Sbjct: 390 NAMISALASHGKAKEALSLFERMSDEGGSARPNDITFV----SLL--SACVHAGLVDEGY 443

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
                               D    LF  +P+  +  ++ ++   S+       ++ +E+
Sbjct: 444 RL-----------------FDMMSTLFGLVPK--IEHYSCMVDLLSRAGHLYEAWDVIEK 484

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLI 442
               PD++T  +L SAC    +V +GER+  +++E   + P    +Y     +Y    + 
Sbjct: 485 MPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLE---LDPSNSGNYIISSKIYENLNMW 541

Query: 443 DEAYSM 448
           D+A  M
Sbjct: 542 DDAARM 547



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I    S  +NG+     T  ++L  C  + A++ G ++        L+ +  +++ L
Sbjct: 302 DEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATAL 361

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--V 190
           + +YA  G ++ A +VF+ M  +   +  WN++IS  A  G+ ++A++L+ +M +EG   
Sbjct: 362 IDMYAKCGSLESAQRVFNDMPRKNDAS--WNAMISALASHGKAKEALSLFERMSDEGGSA 419

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
            P+  TF  +L AC   GL+  G ++  D +   FG    +   + +VD+ ++ G + +A
Sbjct: 420 RPNDITFVSLLSACVHAGLVDEGYRL-FDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEA 478

Query: 249 RTVFDRIGNK 258
             V +++  K
Sbjct: 479 WDVIEKMPEK 488


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 13/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V NG      TF  +L+ C +   V+ G ++H +        +  + + LL  Y+  G  
Sbjct: 97  VGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKW 156

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD+M  R   +  W  LISGY   G +++AI L+ +M+   V P+  TF  VL 
Sbjct: 157 GGAGRVFDEMLVRDVVS--WTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLV 211

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  +G + +G+ VH    +  FG    V NALVDMY KC  + +AR +FD + ++D++S
Sbjct: 212 ACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVS 271

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVL 319
           + S+++G +      ++ ++F  M ++G +PD + ++S+L A ASL  L  G  V  ++ 
Sbjct: 272 WTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIE 331

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R+G+EWD+ I  +L+ +Y+K G ++ A  +F+ +P +++ +WN+++     H   HEAL 
Sbjct: 332 RQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALK 391

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNL 435
           +FE M   G+ P+ +TF+++L+AC H G V  G   F  M+ + +  SPR+EHY CM++L
Sbjct: 392 HFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDL 451

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             RAGL+DEAY  I   M      ++WGALL AC  +GNV + +     L EL+  +   
Sbjct: 452 LCRAGLLDEAYKFI-RNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGV 510

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + LL  IY    R DDV RV R++ D+G+ 
Sbjct: 511 YVLLSNIYATNERWDDVTRVRRLMKDKGIR 540



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 194/389 (49%), Gaps = 22/389 (5%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT-FGLIDEAHQVFDQMSNR 155
           LL + ++ K +    ++H  +  + L  ++ + SK+   +    G +D A    +Q    
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLH 67

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
                P+N+LI+ YA     + A  +Y ++   G  PD +TFP VLKAC     ++ GE+
Sbjct: 68  VG-TLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQ 126

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH  AV+ GF  D +V N+L+  Y+ CG    A  VFD +  +D++S+  +++GY+  GL
Sbjct: 127 VHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGL 186

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
             EA ++F  M +    P+     S+L        L +G  VHG V +R     L + N+
Sbjct: 187 FDEAINLFLKMDVV---PNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNA 243

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           L+ +Y K   L +A  LFD +P +D+VSW SII       +  ++L  F  M+  GV PD
Sbjct: 244 LVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPD 303

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            +   S+LSACA LG++  G R     +E+ GI   +     +V++Y + G I+ A  + 
Sbjct: 304 RIILTSVLSACASLGALDYG-RWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHI- 361

Query: 450 VEKMEFEASP----VVWGALLYACYLHGN 474
                F   P      W ALL    +HG+
Sbjct: 362 -----FNGIPNRNIFTWNALLGGLAMHGH 385



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 130/264 (49%), Gaps = 18/264 (6%)

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           R+L +      IR  +++H   +  G   D FVL+ + + + K   I      FD +   
Sbjct: 7   RLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGK--HIGFVDYAFDFLNQT 64

Query: 259 DL----ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--G 311
           DL    + YN+++  Y        AF ++  ++ NGF PD      +L A    L +  G
Sbjct: 65  DLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEG 124

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
            QVHG  ++ G   DL + NSL+  YS  GK   A  +FD M  +DVVSW  +I  + + 
Sbjct: 125 EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRT 184

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVE 427
               EA+  F +M+   V+P+  TFVS+L AC  +G + +G+ +  ++ ++ +GI   V 
Sbjct: 185 GLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVG 241

Query: 428 HYACMVNLYGRAGLIDEAYSMIVE 451
           +   +V++Y +   + EA  +  E
Sbjct: 242 N--ALVDMYVKCECLCEARKLFDE 263


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 257/445 (57%), Gaps = 9/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+  +L TC   + ++ G ++H L        +  +S  L+ +Y+ +G +++A
Sbjct: 340 GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +V + +  +   +  W S+I+GY +    +DA+A + +M++ G+ PD       +  CA
Sbjct: 400 RRVLEMLKEKDVVS--WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCA 457

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +R G ++H      G+  D  + NALV++YA+CG I +A + F+ I +KD I++N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           +++G+   GL  EA  +F  M  +G   +     S L   AN + ++ G Q+H  V++ G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
             ++  + N+LI +Y K G  + A   F  M +++ VSWN+II +   H +  EAL  F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM+++G+ P+ +TF+ +L+AC+H+G V+ G   F  M ++YGI PR +HYAC+++++GRA
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRA 697

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D A   I E+M   A  +VW  LL AC +H N+ +GE AA+ L ELEP +  ++ LL
Sbjct: 698 GQLDRAKKFI-EEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLL 756

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
              Y    +  + ++V +M+ DRG+
Sbjct: 757 SNAYAVTEKWANRDQVRKMMRDRGV 781



 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 217/399 (54%), Gaps = 19/399 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G++    T +SLL  C  L  ++ G +LH  +    +  +  +   LL LY   G ++ 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F+  S+RT     WN ++  + ++ +   +  L+ QM+  G+ P+QFT+P +L+ C
Sbjct: 298 ALVIFNS-SDRTNVVL-WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                I +GE++H  +V+ GF  D +V   L+DMY+K G + KAR V + +  KD++S+ 
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM+ GY+ H    +A   F+ M   G  PD + ++S +   A  + +R G Q+H  +   
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ I N+L+ +Y++ G++ +A   F+ +  KD ++WN ++   ++     EAL  F
Sbjct: 476 GYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVF 535

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M++ GV  +  TFVS LSA A+L  +K G+++ + ++ K G S   E    +++LYG+
Sbjct: 536 MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI-KTGHSFETEVGNALISLYGK 594

Query: 439 AGLIDEAYSMIVEKMEF----EASPVVWGALLYACYLHG 473
            G  ++A      KMEF    E + V W  ++ +C  HG
Sbjct: 595 CGSFEDA------KMEFSEMSERNEVSWNTIITSCSQHG 627



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 211/405 (52%), Gaps = 18/405 (4%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H    T  L K + + + L+ LY+  GL+  A +VF+++S R   +  W +++SGYA+
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS--WVAMLSGYAQ 120

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G  E+A+ LY QM   GV P  +    VL +C    L   G  +H    + GF  + FV
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NA++ +Y +CG    A  VF  + ++D +++N++++G+   G    A +IF  M  +G 
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 292 DPDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD V ISS+LA  ASL  L+ G Q+H ++ + G+  D  +  SL+ +Y K G ++ A  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSLLSACAHLGS 405
           +F+   + +VV WN ++ A  + ++    FE   QM+  G+ P+  T+  +L  C     
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +GE++ S+ V K G    +     ++++Y + G +++A  ++  +M  E   V W ++
Sbjct: 361 IDLGEQIHSLSV-KTGFESDMYVSGVLIDMYSKYGWLEKARRVL--EMLKEKDVVSWTSM 417

Query: 466 LYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAG 507
           + A Y+    C    AA K  +   + PD   N  L   I G AG
Sbjct: 418 I-AGYVQHECCKDALAAFKEMQKCGIWPD---NIGLASAISGCAG 458



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 152/279 (54%), Gaps = 10/279 (3%)

Query: 197 FPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           F   L+AC G G   +V  ++H  AV  G G    V N L+D+Y+K G ++ AR VF+ +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGA 312
             +D +S+ +ML+GY  +GL  EA  ++R M   G  P P  +SS+L++   A L   G 
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            +H    + G   ++ + N++I +Y + G    A  +F  MP +D V++N++I  H++  
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
               AL  FE+M+  G+ PD +T  SLL+ACA LG ++ G +L S +  K GIS      
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF-KAGISSDYIME 282

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
             +++LY + G ++ A  +++       + V+W  +L A
Sbjct: 283 GSLLDLYVKCGDVETA--LVIFNSSDRTNVVLWNLMLVA 319



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           Q+G+     TF S L     L  ++ G ++H R+I T    + + + + L+ LY   G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE-VGNALISLYGKCGSF 598

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F +MS R   +  WN++I+  ++ G   +A+ L+ QM++EG++P+  TF  VL 
Sbjct: 599 EDAKMEFSEMSERNEVS--WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLA 656

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGF----DGFVLNALVDMYAKCGDIVKARTVFDRIG-N 257
           AC+ +GL+  G   +  ++   +G     D +    ++D++ + G + +A+   + +   
Sbjct: 657 ACSHVGLVEEGLS-YFKSMSDEYGIRPRPDHYA--CVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 258 KDLISYNSMLTG-YIHHGLLVEAF 280
            D + + ++L+   +H  + V  F
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEF 737


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 251/445 (56%), Gaps = 11/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF ++L  C  + A   G ++H  I  +    N  + S L+ +YA  G +  A
Sbjct: 260 GVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNA 319

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             + + M +    +  WNSL+ G+   G  E+A+ L+  M    ++ D +TFP VL  C 
Sbjct: 320 KNMLETMEDDDVVS--WNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV 377

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G I   + VH   ++ GF     V NALVDMYAK GD+  A TVF+++  KD+IS+ S
Sbjct: 378 -VGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTS 435

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++TGY  +    E+  IF  M + G +PD   ++SIL   A  +LL  G QVH   ++ G
Sbjct: 436 LVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSG 495

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           + W   + NSL+ +Y+K G LD A  +F  M  KDV++W +II  ++   K   +L +++
Sbjct: 496 LRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYD 555

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M   G  PD +TF+ LL AC+H G V  G + F  M + YGI P  EHYACM++L+GR+
Sbjct: 556 AMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRS 615

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +DEA   ++++M+ +    VW +LL AC +H N+ + E AA  LFELEP N   + +L
Sbjct: 616 GKLDEA-KQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVML 674

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             +Y  + + +DV ++ +++  +G+
Sbjct: 675 SNMYSASRKWNDVAKIRKLMKSKGI 699



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 134/463 (28%), Positives = 238/463 (51%), Gaps = 42/463 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L  C  L  ++ G  +H  +  N    N  + + L+ +YA    + EA  +F  +
Sbjct: 164 TLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGL 223

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    W ++++GYA+ G+   A+  +  M  +GVE +Q+TFP +L AC+ +     
Sbjct: 224 EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE+VH   V+ GFG + +V +ALVDMYAKCGD+  A+ + + + + D++S+NS++ G++ 
Sbjct: 284 GEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-VHGWVLRRGVEWDLCIAN 331
           HGL  EA  +F+ M       D     S+L    +  I  + VHG +++ G E    ++N
Sbjct: 344 HGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN 403

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLP 388
           +L+ +Y+K G +D A  +F+ M +KDV+SW S++  +++++   E+L  F  M   GV P
Sbjct: 404 ALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNP 463

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D     S+LSACA L  ++ G+++    + K G+      Y  +V +Y + G +D+A ++
Sbjct: 464 DQFIVASILSACAELTLLEFGKQVHLDFI-KSGLRWSQSVYNSLVAMYAKCGCLDDADAI 522

Query: 449 IV------------------------EKMEFEASPVVWG---------ALLYACYLHGNV 475
            V                          ++F  + V  G          LL+AC   G V
Sbjct: 523 FVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLV 582

Query: 476 CMGETAAQ---KLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
             G    Q   K++ ++P  EH +  +I ++G +G+LD+ +++
Sbjct: 583 DEGRKYFQQMNKVYGIKPGPEH-YACMIDLFGRSGKLDEAKQL 624



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 187/380 (49%), Gaps = 52/380 (13%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS--------------------- 167
           +++LL   +  G +++A ++FD+M  +  ++  WN++IS                     
Sbjct: 68  TNQLLNQLSKSGQVNDARKLFDKMPQKDEYS--WNTMISSYVNVGRLVEARELFDGCSCK 125

Query: 168 ----------GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
                     GY + G   +A  L+  M  EG +  QFT   VL+ C+ LGLI+ GE +H
Sbjct: 126 SSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIH 185

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD--RIGNKDLISYNSMLTGYIHHGL 275
              V+ GF  + FV+  LVDMYAKC  + +A  +F       K+ + + +M+TGY  +G 
Sbjct: 186 GFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGD 245

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANAS--LLR-IGAQVHGWVLRRGVEWDLCIANS 332
             +A + FR M   G + +     +IL   S  L R  G QVHG++++ G   ++ + ++
Sbjct: 246 GYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSA 305

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           L+ +Y+K G L  A  + + M   DVVSWNS++     H  + EAL  F+ M    +  D
Sbjct: 306 LVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKID 365

Query: 390 HLTFVSLLSACAHLGSVK---VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             TF S+L+ C  +GS+    V   +     E Y +         +V++Y + G +D AY
Sbjct: 366 DYTFPSVLNCCV-VGSINPKSVHGLIIKTGFENYKLVSNA-----LVDMYAKTGDMDCAY 419

Query: 447 SMIVEKMEFEASPVVWGALL 466
           + + EKM  E   + W +L+
Sbjct: 420 T-VFEKM-LEKDVISWTSLV 437



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 140/254 (55%), Gaps = 11/254 (4%)

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D +  N ++  Y   G +V+AR +FD    K  I+++S+++GY   G  VEAFD+FR M 
Sbjct: 95  DEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMR 154

Query: 288 LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           L G+      + S+L   ++  L++ G  +HG+V++ G E ++ +   L+ +Y+K   + 
Sbjct: 155 LEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVS 214

Query: 345 QACWLFDHMP--QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSA 399
           +A +LF  +   +K+ V W +++  ++++   ++A+ +F  M   GV  +  TF ++L+A
Sbjct: 215 EAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTA 274

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+ + +   GE++   +V K G    V   + +V++Y + G +  A +M+ E ME +   
Sbjct: 275 CSSVLARCFGEQVHGFIV-KSGFGSNVYVQSALVDMYAKCGDLKNAKNML-ETME-DDDV 331

Query: 460 VVWGALLYACYLHG 473
           V W +L+     HG
Sbjct: 332 VSWNSLMVGFVRHG 345


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 256/474 (54%), Gaps = 47/474 (9%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + T   A L++   + K + H +++H ++  + L  +  ++ KL R YA+ G +D +  +
Sbjct: 28  ISTNRLAVLID---KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVAL 84

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F +  N + F   W ++I G+A  G +E A+  Y QM  +GVEP+ FTF  +LK C    
Sbjct: 85  FGRTQNPSVFF--WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP--- 139

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            I  G+ +H  AV+ GF  D +V   L+D+YA+ GD+V A+ +FD +  K L+S  +MLT
Sbjct: 140 -IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLT 198

Query: 269 -------------------------------GYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
                                          GY  +G+  EA  +FR M+     P+ V 
Sbjct: 199 CYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVT 258

Query: 298 ISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           + S+L+       L  G  VH ++   G+++++ +  +L+ +YSK G L+ A  +FD + 
Sbjct: 259 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 318

Query: 355 QKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            KDVV+WNS+I     H    EAL  F+ M R G+ P ++TF+ +LSAC H G V  G  
Sbjct: 319 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 378

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +F+ M ++YGI P++EHY CMVNL GRAG +++AY + V+ M  E  PV+WG LL AC L
Sbjct: 379 IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYEL-VKNMNIEPDPVLWGTLLGACRL 437

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           HG + +GE   + L +    N   + LL  IY   G  D V R+  M+ D G++
Sbjct: 438 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 491


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 257/445 (57%), Gaps = 9/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+  +L TC   + ++ G ++H L        +  +S  L+ +Y+ +G +++A
Sbjct: 340 GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +V + +  +   +  W S+I+GY +    +DA+A + +M++ G+ PD       +  CA
Sbjct: 400 RRVLEMLKEKDVVS--WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCA 457

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +R G ++H      G+  D  + NALV++YA+CG I +A + F+ I +KD I++N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           +++G+   GL  EA  +F  M  +G   +     S L   AN + ++ G Q+H  V++ G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
             ++  + N+LI +Y K G  + A   F  M +++ VSWN+II +   H +  EAL  F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM+++G+ P+ +TF+ +L+AC+H+G V+ G   F  M ++YGI PR +HYAC+++++GRA
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRA 697

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D A   I E+M   A  +VW  LL AC +H N+ +GE AA+ L ELEP +  ++ LL
Sbjct: 698 GQLDRAKKFI-EEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLL 756

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
              Y    +  + ++V +M+ DRG+
Sbjct: 757 SNAYAVTEKWANRDQVRKMMRDRGV 781



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 217/399 (54%), Gaps = 19/399 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G++    T +SLL  C  L  ++ G +LH  +    +  +  +   LL LY   G ++ 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F+  S+RT     WN ++  + ++ +   +  L+ QM+  G+ P+QFT+P +L+ C
Sbjct: 298 ALVIFNS-SDRTNVVL-WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                I +GE++H  +V+ GF  D +V   L+DMY+K G + KAR V + +  KD++S+ 
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM+ GY+ H    +A   F+ M   G  PD + ++S +   A  + +R G Q+H  +   
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ I N+L+ +Y++ G++ +A   F+ +  KD ++WN ++   ++     EAL  F
Sbjct: 476 GYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVF 535

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M++ GV  +  TFVS LSA A+L  +K G+++ + ++ K G S   E    +++LYG+
Sbjct: 536 MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI-KTGHSFETEVGNALISLYGK 594

Query: 439 AGLIDEAYSMIVEKMEF----EASPVVWGALLYACYLHG 473
            G  ++A      KMEF    E + V W  ++ +C  HG
Sbjct: 595 CGSFEDA------KMEFSEMSERNEVSWNTIITSCSQHG 627



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 211/405 (52%), Gaps = 18/405 (4%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H    T  L K + + + L+ LY+  GL+  A +VF+++S R   +  W +++SGYA+
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS--WVAMLSGYAQ 120

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G  E+A+ LY QM   GV P  +    VL +C    L   G  +H    + GF  + FV
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NA++ +Y +CG    A  VF  + ++D +++N++++G+   G    A +IF  M  +G 
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 292 DPDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD V ISS+LA  ASL  L+ G Q+H ++ + G+  D  +  SL+ +Y K G ++ A  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSLLSACAHLGS 405
           +F+   + +VV WN ++ A  + ++    FE   QM+  G+ P+  T+  +L  C     
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +GE++ S+ V K G    +     ++++Y + G +++A  ++  +M  E   V W ++
Sbjct: 361 IDLGEQIHSLSV-KTGFESDMYVSGVLIDMYSKYGWLEKARRVL--EMLKEKDVVSWTSM 417

Query: 466 LYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAG 507
           + A Y+    C    AA K  +   + PD   N  L   I G AG
Sbjct: 418 I-AGYVQHECCKDALAAFKEMQKCGIWPD---NIGLASAISGCAG 458



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 152/279 (54%), Gaps = 10/279 (3%)

Query: 197 FPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           F   L+AC G G   +V  ++H  AV  G G    V N L+D+Y+K G ++ AR VF+ +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGA 312
             +D +S+ +ML+GY  +GL  EA  ++R M   G  P P  +SS+L++   A L   G 
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            +H    + G   ++ + N++I +Y + G    A  +F  MP +D V++N++I  H++  
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
               AL  FE+M+  G+ PD +T  SLL+ACA LG ++ G +L S +  K GIS      
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF-KAGISSDYIME 282

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
             +++LY + G ++ A  +++       + V+W  +L A
Sbjct: 283 GSLLDLYVKCGDVETA--LVIFNSSDRTNVVLWNLMLVA 319



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           Q+G+     TF S L     L  ++ G ++H R+I T    + + + + L+ LY   G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE-VGNALISLYGKCGSF 598

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F +MS R   +  WN++I+  ++ G   +A+ L+ QM++EG++P+  TF  VL 
Sbjct: 599 EDAKMEFSEMSERNEVS--WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLA 656

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGF----DGFVLNALVDMYAKCGDIVKARTVFDRIG-N 257
           AC+ +GL+  G   +  ++   +G     D +    ++D++ + G + +A+   + +   
Sbjct: 657 ACSHVGLVEEGLS-YFKSMSDEYGIRPRPDHYA--CVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 258 KDLISYNSMLTG-YIHHGLLVEAF 280
            D + + ++L+   +H  + V  F
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEF 737


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 256/447 (57%), Gaps = 12/447 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I+    TF  +   C  L+ +      H  +    L  +    + ++ +Y   G    A 
Sbjct: 113 ISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVAR 172

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACA 205
           +VFD+++ +   +  WNSL+SGYA+LG   +A+ ++ ++ EE G EPD+ +   VL AC 
Sbjct: 173 KVFDEITEKDLVS--WNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG + +G  V    V  G   + ++ +AL+ MY+KCG++V +R +FD + ++D I++N+
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
            ++ Y  +G+  EA  +F  M  NG DP+ V ++++L   A+   L +G Q+  +   RG
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRG 350

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           ++ D+ +A +LI +Y+K G L+ A  +F+ MP+K+  SWN++I A   H K  EAL  FE
Sbjct: 351 LQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFE 410

Query: 380 QMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           +M  +G    P+ +TFVSLLSAC H G V  G RLF +M   +G+ P++EHY+CMV+L  
Sbjct: 411 RMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLS 470

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + EA+  ++EKM  +   V  GAL  AC    NV +GE   Q L EL+P N  N+ 
Sbjct: 471 RAGHLYEAWD-VIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYI 529

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  KIY N    DD  R+  ++ + G+
Sbjct: 530 ISSKIYENLNMWDDAARMRALMRENGV 556



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 194/360 (53%), Gaps = 21/360 (5%)

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           +Y   + LY QM+   + P+ FTFP V  ACA L  IR+    H +  + G   D   +N
Sbjct: 97  DYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVN 156

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF-RGMILNGFD 292
           ++V MY +CG+   AR VFD I  KDL+S+NS+L+GY   G   EA ++F R    +GF+
Sbjct: 157 SMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFE 216

Query: 293 PDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           PD +++ S+L        L +G  V G+V+ RG++ +  I ++LI +YSK G+L  +  +
Sbjct: 217 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRI 276

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD MP +D ++WN+ I A++++    EA+  F  M+ +GV P+ +T  ++LSACA +G++
Sbjct: 277 FDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGAL 336

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +G+++      + G+   +     ++++Y + G ++ A  +  +      +   W A++
Sbjct: 337 DLGKQMDEYATHR-GLQHDIFVATALIDMYAKCGSLESAQRVFNDMP--RKNDASWNAMI 393

Query: 467 YACYLHGNVCMGETAAQKLFELEPD-------NEHNFELLIKIYGNAGRLDDVERVERML 519
            A   HG        A  LFE   D       N+  F  L+    +AG +D+  R+  M+
Sbjct: 394 SALASHGKA----KEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMM 449



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 31/366 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G      +  S+L  C +L  +E G  +   +    ++ N  I S L+ +Y+  G + 
Sbjct: 212 ESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELV 271

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + ++FD M +R      WN+ IS YA+ G  ++AI+L+  M+E GV+P++ T   VL A
Sbjct: 272 SSRRIFDGMPSRDFIT--WNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSA 329

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G + +G+++   A   G   D FV  AL+DMYAKCG +  A+ VF+ +  K+  S+
Sbjct: 330 CASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASW 389

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N+M++    HG   EA  +F  M   G    P  I+ +    SLL   A VH  ++  G 
Sbjct: 390 NAMISALASHGKAKEALSLFERMSDEGGSARPNDITFV----SLL--SACVHAGLVDEGY 443

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
                               D    LF  +P+  +  ++ ++   S+       ++ +E+
Sbjct: 444 RL-----------------FDMMSTLFGLVPK--IEHYSCMVDLLSRAGHLYEAWDVIEK 484

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLI 442
               PD++T  +L SAC    +V +GER+  +++E   + P    +Y     +Y    + 
Sbjct: 485 MPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLE---LDPSNSGNYIISSKIYENLNMW 541

Query: 443 DEAYSM 448
           D+A  M
Sbjct: 542 DDAARM 547



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I    S  +NG+     T  ++L  C  + A++ G ++        L+ +  +++ L
Sbjct: 302 DEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATAL 361

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--V 190
           + +YA  G ++ A +VF+ M  +   +  WN++IS  A  G+ ++A++L+ +M +EG   
Sbjct: 362 IDMYAKCGSLESAQRVFNDMPRKNDAS--WNAMISALASHGKAKEALSLFERMSDEGGSA 419

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
            P+  TF  +L AC   GL+  G ++  D +   FG    +   + +VD+ ++ G + +A
Sbjct: 420 RPNDITFVSLLSACVHAGLVDEGYRL-FDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEA 478

Query: 249 RTVFDRIGNK 258
             V +++  K
Sbjct: 479 WDVIEKMPEK 488


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/447 (33%), Positives = 258/447 (57%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            +G  V   T+ +L+  C  L+++    ++   +  +    +  + +++L ++   GL+ 
Sbjct: 110 HDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLML 169

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A ++FD+M  +   +  W ++I G+ + G + +A  L+  M EE  +    TF  +++A
Sbjct: 170 DARKLFDEMPEKDMAS--WMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRA 227

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            AGLGL++VG ++H  A++ G G D FV  AL+DMY+KCG I  A  VFD++  K  + +
Sbjct: 228 SAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGW 287

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLR 320
           NS++  Y  HG   EA   +  M  +G   D   IS    I A  + L    Q H  ++R
Sbjct: 288 NSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVR 347

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
           RG + D+    +L+  YSK G+++ A  +F+ M +K+V+SWN++I     H +  EA+  
Sbjct: 348 RGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEM 407

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FEQM R+G++P+H+TF+++LSAC++ G  + G  +F  M   + + PR  HYACMV L G
Sbjct: 408 FEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLG 467

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R GL+DEAY +I     F+ +  +W  LL AC +H N+ +G+ AA+ L+ +EP+   N+ 
Sbjct: 468 REGLLDEAYELI-RSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYI 526

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +L+ +Y ++G+L +   V + L  +GL
Sbjct: 527 VLLNLYNSSGKLKEAAGVLQTLKRKGL 553



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 175 YEDAIALY--FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           Y +A+ L+   ++E +G +    T+  ++ AC GL  IR  ++V    V  GF  D +V+
Sbjct: 96  YREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVM 155

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N ++ ++ KCG ++ AR +FD +  KD+ S+ +M+ G++  G   EAF +F  M     D
Sbjct: 156 NRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFND 215

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
                 ++++   A   L+++G Q+H   L+RGV  D  ++ +LI +YSK G ++ A  +
Sbjct: 216 GRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCV 275

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD MP+K  V WNSII +   H    EAL ++ +M   G   DH T   ++  CA L S+
Sbjct: 276 FDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASL 335

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +  ++  + +V + G    +     +V+ Y + G +++A+  +  +M    + + W AL+
Sbjct: 336 EYAKQAHAALVRR-GYDTDIVANTALVDFYSKWGRMEDAWH-VFNRMR-RKNVISWNALI 392

Query: 467 YACYLHGNVCMGETAAQKLFE 487
                +GN   GE A + +FE
Sbjct: 393 AG---YGNHGQGEEAVE-MFE 409


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 242/424 (57%), Gaps = 11/424 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGI--SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
           G  +H  +  N   ++ G+  ++ LL +YA  G +  A Q+F+ ++ +T  +  W ++I+
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS--WTAMIA 271

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
           G       E+   L+ +M+EE + P++ T   ++  C   G +++G+++H   +R GF  
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
              +  ALVDMY KC DI  AR +FD   N+D++ + +ML+ Y     + +AF++F  M 
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 288 LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
            +G  P  V I S+L   A A  L +G  VH ++ +  VE D  +  +L+ +Y+K G ++
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDIN 451

Query: 345 QACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  LF     +D+  WN+II     H    EAL  F +MER GV P+ +TF+ LL AC+
Sbjct: 452 AAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G V  G++LF  MV  +G+ P++EHY CMV+L GRAGL+DEA+ MI + M  + + +V
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMI-KSMPIKPNTIV 570

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WGAL+ AC LH N  +GE AA +L E+EP+N     L+  IY  A R  D   V + +  
Sbjct: 571 WGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKT 630

Query: 522 RGLE 525
            G++
Sbjct: 631 VGMK 634



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 218/442 (49%), Gaps = 21/442 (4%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S+L+ C Q+   + G ++H  +    L ++  + + L+ +Y     ++ A  VFD+M  R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
              +  W+++I   +   E++ A+ L  +M    V P +     ++   A    +R+G+ 
Sbjct: 159 DVVS--WSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKA 216

Query: 216 VHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +H   +R        V    AL+DMYAKCG +  AR +F+ +  K ++S+ +M+ G I  
Sbjct: 217 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 276

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIA 330
             L E   +F  M      P+ + + S++        L++G Q+H ++LR G    L +A
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA 336

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVL 387
            +L+ +Y K   +  A  LFD    +DV+ W +++ A+++ +   +A   F+QM   GV 
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P  +T VSLLS CA  G++ +G+ + S  ++K  +         +V++Y + G I+ A  
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSY-IDKERVEVDCILNTALVDMYAKCGDINAAGR 455

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE----PDNEHNFELLIKIY 503
           + +E +  +    +W A++    +HG    GE A     E+E      N+  F  L+   
Sbjct: 456 LFIEAISRDI--CMWNAIITGFAMHG---YGEEALDIFAEMERQGVKPNDITFIGLLHAC 510

Query: 504 GNAGRLDDVERV-ERMLVDRGL 524
            +AG + + +++ E+M+   GL
Sbjct: 511 SHAGLVTEGKKLFEKMVHTFGL 532



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 153/289 (52%), Gaps = 12/289 (4%)

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
            F  P VLKAC  +   ++G+++H   ++ G   D FV NAL+ MY +C  +  AR VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
           ++  +D++S+++M+     +     A ++ R M      P  VA+ S++   A+ + +R+
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 311 GAQVHGWVLRRGVEWDLCI--ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           G  +H +V+R      + +    +L+ +Y+K G L  A  LF+ + QK VVSW ++I   
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 368 --HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
              ++  E    F +M+ + + P+ +T +SL+  C   G++++G++L + ++ + G S  
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYIL-RNGFSVS 332

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +     +V++YG+   I  A ++       +   ++W A+L A Y   N
Sbjct: 333 LALATALVDMYGKCSDIRNARALFDSTQNRDV--MIWTAMLSA-YAQAN 378



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 137/284 (48%), Gaps = 15/284 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SL+  C    A++ G +LH  I  N    +  +++ L+ +Y     I  A  +FD  
Sbjct: 300 TMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDST 359

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            NR      W +++S YA+    + A  L+ QM   GV P + T   +L  CA  G + +
Sbjct: 360 QNRDVMI--WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDL 417

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH    +     D  +  ALVDMYAKCGDI  A  +F    ++D+  +N+++TG+  
Sbjct: 418 GKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 477

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ-----VHGWVLRRGVE 324
           HG   EA DIF  M   G  P+ +    +L   ++A L+  G +     VH + L   +E
Sbjct: 478 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 537

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
              C+ + L     + G LD+A  +   MP K + + W +++ A
Sbjct: 538 HYGCMVDLL----GRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 577



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T  SLL  C    A++ G  +H  I    +  +  +++ L+ +YA  G I+ 
Sbjct: 393 SGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 452

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F +  +R      WN++I+G+A  G  E+A+ ++ +ME +GV+P+  TF  +L AC
Sbjct: 453 AGRLFIEAISRDICM--WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHAC 510

Query: 205 AGLGLIRVGEKV 216
           +  GL+  G+K+
Sbjct: 511 SHAGLVTEGKKL 522


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 270/485 (55%), Gaps = 47/485 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
              GI     T+ S+L+ C +   +  G KLH  I  + L  N  + + L+ +YA  G +
Sbjct: 186 THKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGEL 245

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV-- 200
             A  +F+ M  R   +  WN++ISGYA  G +++A  L+ +M  EG+E +  T+  +  
Sbjct: 246 STARCLFENMLERDDVS--WNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAG 303

Query: 201 ---------------------------------LKACAGLGLIRVGEKVHLDAVR-FGFG 226
                                            L AC+ +G I++G ++H  A+R F  G
Sbjct: 304 GCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDG 363

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            D  V NAL+ MY++C  +  A  +F     K++I++NSML+GY H     EA  +FR M
Sbjct: 364 VDN-VKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREM 422

Query: 287 ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDGK 342
           +L+G +P+ V I+SIL   A  + L+ G + H ++LRR G +  L + NSL+ +Y++ GK
Sbjct: 423 LLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGK 482

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           + +A  LFD + ++D V++ S+I  +    +  EAL  F++M++  + PDH+T V++LSA
Sbjct: 483 VLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSA 542

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+H G V  G +LF +M   YGI PR+EH+ACMV+L+GRAGL+ +A  MI  +M +  S 
Sbjct: 543 CSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMIT-RMPYRPSS 601

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            +W  LL AC +HGN  +GE AA+KL E+ P+N   + L+  +Y  AG    + +V   +
Sbjct: 602 AMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYM 661

Query: 520 VDRGL 524
            D G+
Sbjct: 662 RDLGV 666



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 232/498 (46%), Gaps = 89/498 (17%)

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
            LK++  G +LH LI +    ++  I  KL+  Y  F L+ +AH + +  ++      PW
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITE--NSNILHPLPW 162

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N LIS Y   G + +A++ Y QM  +G+ PD+FT+P VLKAC     I  G+K+H     
Sbjct: 163 NLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINA 222

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
              G++ FV N+LV MYAK G++  AR +F+ +  +D +S+N+M++GY   G+  EAF++
Sbjct: 223 SCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFEL 282

Query: 283 F-----RGMILN------------------------------GFDPDPVAISSILANAS- 306
           F      G+ LN                              G D D VA    L   S 
Sbjct: 283 FGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSH 342

Query: 307 --LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              +++G ++HG  +R   +    + N+LI +YS+   L  A  LF     K++++WNS+
Sbjct: 343 IGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSM 402

Query: 365 IHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           +  ++   +  EA   F +M   G+ P+++T  S+L  CA + +++ G+     ++ + G
Sbjct: 403 LSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAG 462

Query: 422 ISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWG--------------- 463
               +  +  +V++Y R+G + EA   +  I  + E   + ++ G               
Sbjct: 463 FKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFD 522

Query: 464 ---------------ALLYACYLHGNVCMGETAAQKLFELEPDN-------EHNFELLIK 501
                          A+L AC   G V    T   KLFEL P         EH F  ++ 
Sbjct: 523 EMKKRHIKPDHVTMVAVLSACSHSGLV----TEGIKLFELMPSAYGIIPRLEH-FACMVD 577

Query: 502 IYGNAGRLDDV-ERVERM 518
           ++G AG L    E + RM
Sbjct: 578 LFGRAGLLHKAKEMITRM 595


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 259/442 (58%), Gaps = 9/442 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +ET+ +L+  C  LK++    K+   +  + L  ++ + +++L ++   G++ +A ++
Sbjct: 129 MDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M  +   +  WN++I G  + G+Y +A  L+  M +   +     F  +++A AGLG
Sbjct: 189 FDEMPEKNILS--WNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLG 246

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           LI  G ++H  +++ G G D FV  AL+DMY+KCG I  A+ VFD++  K  + +NS++ 
Sbjct: 247 LIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIA 306

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           GY  HG   EA  ++  M  +G   D    S I+   A  + L    Q H  ++R G   
Sbjct: 307 GYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGL 366

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D+    +L+ +YSK G+++ A  +FD MP K+V+SWN++I     H +  EA+  FE+M 
Sbjct: 367 DIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +G++P+H+TF+++LSAC++ G    G  +F  M   + I PR  HYACM+ L GR GL+
Sbjct: 427 HEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLL 486

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           DEA+++I +   F+ +  +W ALL AC +H N  +G+ AA+KL+ + P+   N+ +L+ I
Sbjct: 487 DEAFALI-KDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y  +GRL++   V + L  RGL
Sbjct: 546 YNXSGRLEEAAAVIQTLKRRGL 567



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLYATFG 140
           +G+ +   TF+ ++  C +L ++EH  + H      L+R   G+    ++ L+ LY+ +G
Sbjct: 327 SGVKIDNFTFSIIIRICARLASLEHAKQAH----AGLVRHGFGLDIVANTALVDLYSKWG 382

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            I++A  VFD M ++   +  WN+LI+GY   G   +A+ ++ +M  EG+ P+  TF  V
Sbjct: 383 RIEDAKHVFDMMPHKNVIS--WNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 201 LKACAGLGLIRVGEKV 216
           L AC+  GL   G ++
Sbjct: 441 LSACSYSGLSDRGWEI 456


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/436 (37%), Positives = 246/436 (56%), Gaps = 10/436 (2%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S+L+ C     V  G  +H       +       + LL +YA  G++D A  VFD MS R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           T     W SLI+ YA  G  ++AI L+ +M+ EGV PD FT   VL ACA  G +  G+ 
Sbjct: 63  TVVT--WTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH          + FV NAL+DMYAKCG +  A +VF  +  KD+IS+N+M+ GY  + L
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLRRGVEWDLCIANS 332
             EA  +F  M+L    PD   ++ IL A ASL  +  G +VHG +LR G   D  +AN+
Sbjct: 181 PNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           L+ +Y K G    A  LFD +P KD+++W  +I     H   + A+  F +M + G+ PD
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPD 299

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            ++F+S+L AC+H G +  G R F+VM ++  + P++EHYAC+V+L  R+G +  AY  I
Sbjct: 300 EVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFI 359

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509
            + M  E    +WGALL  C +H +V + E  A+ +FELEP+N   + LL   Y  A + 
Sbjct: 360 -KSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKW 418

Query: 510 DDVERVERMLVDRGLE 525
           ++V+++ + +  RGL+
Sbjct: 419 EEVKKLRQKIGRRGLK 434



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 152/312 (48%), Gaps = 20/312 (6%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I+      + G++    T  ++L  C    ++E+G  +H  I  N ++ N  + + L
Sbjct: 81  DEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNAL 140

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G +++A+ VF +M  +   +  WN++I GY++     +A++L+  M  E ++P
Sbjct: 141 MDMYAKCGSMEDANSVFLEMPVKDIIS--WNTMIGGYSKNSLPNEALSLFGDMVLE-MKP 197

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   +L ACA L  +  G++VH   +R GF  D  V NALVDMY KCG  V AR +F
Sbjct: 198 DGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLF 257

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
           D I  KDLI++  M+ GY  HG    A   F  M   G +PD V+  SIL   S    G 
Sbjct: 258 DMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACS--HSGL 315

Query: 313 QVHGWV----------LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSW 361
              GW           ++  +E   CI + L    ++ GKL  A      MP + D   W
Sbjct: 316 LDEGWRFFNVMQDECNVKPKLEHYACIVDLL----ARSGKLAMAYKFIKSMPIEPDATIW 371

Query: 362 NSIIHAHSKDHE 373
            +++      H+
Sbjct: 372 GALLSGCRIHHD 383



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 91/159 (57%), Gaps = 4/159 (2%)

Query: 296 VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           V+I    AN   + +G  VHG  ++  V W     N+L+ +Y+K G LD A  +FD M  
Sbjct: 2   VSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSV 61

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           + VV+W S+I A++++    EA+  F +M+R+GV PD  T  ++L ACA  GS++ G+ +
Sbjct: 62  RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            + + E   +   +     ++++Y + G +++A S+ +E
Sbjct: 122 HNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLE 159


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 258/450 (57%), Gaps = 12/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V +G+ +   +  S+L  C  LK +E G ++H L+   +L K K +S+ L+ +YA  G +
Sbjct: 215 VDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGK-KIVSNALVDMYAKCGSM 273

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  VFD M  R   +  W S+I+GY   G+ + A++L+  M+ EG+ P+  T   +L 
Sbjct: 274 DEARLVFDNMVERDVVS--WTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILL 331

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  ++ G  +H   ++     +  V  +L+DMYAKC  +  + +VF R   K  + 
Sbjct: 332 ACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVP 391

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVL 319
           +N++L+G +H+ L  EA  +F+ M++ G + +    +S+L    +L   +    ++ +++
Sbjct: 392 WNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLM 451

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEA 374
           R G   ++ +A SLI +YSK G L+ A  +F+ +P   +D+  W+ II     H     A
Sbjct: 452 RSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETA 511

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  F+QM + GV P+ +TF S+L +C+H G V  G  LF  M++ +   P  +HY CMV+
Sbjct: 512 VSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVD 571

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAG +DEAY +I + M F     VWGALL AC +H NV +GE AA+ LFELEP N  
Sbjct: 572 LLGRAGRMDEAYDLI-KTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTG 630

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           N+ LL K+Y   GR +D E V + + D GL
Sbjct: 631 NYVLLAKLYAALGRWEDAENVRQRMDDIGL 660



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 225/445 (50%), Gaps = 19/445 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +T  + SLL+     +++    +LH  LI + LL  +  I S L+  YA  G +  A ++
Sbjct: 20  KTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSID--IRSVLVATYAHCGYVHNARKL 77

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGL 207
           FD++  R    +  N +I  Y   G+Y +A+ ++ +M   +   PD +T+P V+KAC+ L
Sbjct: 78  FDELRQRGTLLY--NFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSEL 135

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
            L+  G  +H   +   FG   FVLN+L+ MY  CG++ +AR VFD +  K ++S+N+M+
Sbjct: 136 LLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMI 195

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVE 324
            GY  +G    A  +F  M+ +G + D  ++ S+L     L+   +G +VHG V  + V 
Sbjct: 196 NGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEK-VL 254

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQM 381
               ++N+L+ +Y+K G +D+A  +FD+M ++DVVSW S+I+ +        AL  F+ M
Sbjct: 255 GKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIM 314

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
           + +G+ P+ +T   +L ACA L ++K G R     V K  +   V     ++++Y +   
Sbjct: 315 QIEGLRPNSVTIALILLACASLNNLKDG-RCLHGWVMKQRLYSEVAVETSLIDMYAKCNC 373

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK--LFELEPDNEHNFELL 499
           +  ++S+       +  P  W ALL  C +H  +        K  L E    N      L
Sbjct: 374 LGLSFSVFTRTSRKKTVP--WNALLSGC-VHNKLATEAIGLFKKMLMEGVEINAATCNSL 430

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
           +  YG    L  V  +   L+  G 
Sbjct: 431 LPAYGILADLQPVNNINSYLMRSGF 455


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 266/477 (55%), Gaps = 38/477 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C + KA + G ++H  +       +  + + L+ +Y   G +++A
Sbjct: 129 GLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDA 188

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            +VFD+  +R   ++                              WN++ISGYAE G Y+
Sbjct: 189 RKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+ +M +  + PD+ T   V+ ACA  G I +G +VH      GFG +  ++N+L+
Sbjct: 249 EALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLM 308

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++  A  +F+ +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 309 DLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDV 368

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R         +  SLI +Y+K G ++ A  +F+
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFN 428

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +  K + SWN++I     H +   A   F +M + G+ PD +TFV LLSAC+  G + +
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDL 488

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M + Y I+P++EHY CM++L G +GL  EA  MI   ME E   V+W +LL A
Sbjct: 489 GRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-NNMEMEPDGVIWCSLLKA 547

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C + GNV +GE+ AQ L ++EP+N   + LL  IY  AGR ++V ++  +L D+G++
Sbjct: 548 CKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMK 604



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 227/463 (49%), Gaps = 61/463 (13%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT---FGLIDEAHQVFDQM 152
           SLL  C  L+++   +   ++I T L   N  +S KLL L      F  +  A  VF+ +
Sbjct: 38  SLLHNCKTLQSLR--LIHAQMIKTGLHNTNYALS-KLLELCVISPHFDGLPYAISVFETI 94

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++  G+A   +   A+ LY  M   G+ P+ +TFP +LK+CA     + 
Sbjct: 95  QEPNLLI--WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKE 152

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR------------------ 254
           G+++H   ++ G+  D FV  +L+ +Y + G +  AR VFDR                  
Sbjct: 153 GQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS 212

Query: 255 -------------IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAI 298
                        I  KD++S+N+M++GY   G   EA ++F+ M+     PD    V +
Sbjct: 213 RGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTV 272

Query: 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
            S  A +  + +G QVH W+   G   +L I NSL+ +YSK G+L+ AC LF+ +  KDV
Sbjct: 273 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDV 332

Query: 359 VSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SWN++I  ++  +   EAL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIG-RWIHV 391

Query: 416 MVEKY--GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++K     +        ++++Y + G I+ A+ +    +    S   W A+++   +HG
Sbjct: 392 YIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS--WNAMIFGFAMHG 449

Query: 474 NVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
                  AA  +F       +EPD+   F  L+     +G LD
Sbjct: 450 RA----DAAFDIFSRMRKIGIEPDDI-TFVGLLSACSRSGMLD 487



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 171/364 (46%), Gaps = 33/364 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  I     T  +++  C Q  ++E G ++H  I  +    N  I + L+ LY+  G +
Sbjct: 258 MKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGEL 317

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F+ +  +   +  WN+LI GY  +  Y++A+ L+ +M   G  P+  T   +L 
Sbjct: 318 ETACGLFEGLLYKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375

Query: 203 ACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           ACA LG I +G  +H  +D           +  +L+DMYAKCGDI  A  VF+ I +K L
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+N+M+ G+  HG    AFDIF  M   G +PD +    +L+  S  R G    G  + 
Sbjct: 436 SSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACS--RSGMLDLGRHIF 493

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380
           R +  D          Y    KL+    + D +    +           K+ E +I   +
Sbjct: 494 RTMTQD----------YKITPKLEHYGCMIDLLGHSGLF----------KEAEEMINNME 533

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ME DGV+     + SLL AC   G+V++GE     +++    +P    Y  + N+Y  AG
Sbjct: 534 MEPDGVI-----WCSLLKACKIRGNVELGESFAQNLIKIEPENPGC--YVLLSNIYATAG 586

Query: 441 LIDE 444
             +E
Sbjct: 587 RWNE 590


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 284/506 (56%), Gaps = 37/506 (7%)

Query: 51  KSSPTPLLTN--QKAFPKTKLQALDSIIQDLESSVQN-------------GITVQTETFA 95
           + S  P LT    K   KT + + +S+I +L  S  +              +     TF 
Sbjct: 97  RYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFP 156

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
             +++C  L  +  G + H+         +  +SS L+ +Y+  G + +A  +FD++S+R
Sbjct: 157 CAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR 216

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALY--FQMEEEGVEPD------QFTFPRVLKACAGL 207
              +  W S+I+GY +  +   A+ L+  F +EE G E D            VL AC+ +
Sbjct: 217 NIVS--WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRV 274

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
               + E VH   ++ GF  D  V N L+D YAKCG++  +R VFD +  +D+IS+NS++
Sbjct: 275 SEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSII 334

Query: 268 TGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
             Y  +G+  E+ +IF  M+ +G  + + V +S++L   A++   R+G  +H  V++ G+
Sbjct: 335 AVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGL 394

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYF 378
           E ++ +  S+I +Y K GK++ A   FD M +K+V SW++++     H H+K  EAL  F
Sbjct: 395 ESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAK--EALEVF 452

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M   GV P+++TFVS+L+AC+H G ++ G   F  M  ++ + P VEHY CMV+L GR
Sbjct: 453 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGR 512

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + EA+ +I + M+     VVWGALL AC +H NV +GE +A+KLFEL+P N   + L
Sbjct: 513 AGYLKEAFDLI-KGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVL 571

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  IY +AGR +DVER+  ++ + GL
Sbjct: 572 LSNIYADAGRWEDVERMRILMKNSGL 597


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 248/448 (55%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G      T  S+L  C   +A+    ++H         +   +S+ +L +Y   G +D
Sbjct: 320 EDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVD 379

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD M +R + +  WN++I GYAE G+  +A+AL+ +M  EGV+    +    L A
Sbjct: 380 SARKVFDGMQDRNSVS--WNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHA 437

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  LG +  G +VH   VR G   +  V+NAL+ MY KC     A  VFD +G K  +S+
Sbjct: 438 CGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSW 497

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLR 320
           N+M+ G   +G   +A  +F  M L    PD   + SI   LA+ S       +HG+ +R
Sbjct: 498 NAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIR 557

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIY 377
             ++ D+ +  +LI +Y+K G++  A  LF+    + V++WN++IH   +H     A+  
Sbjct: 558 LHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVEL 617

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE+M+  G +P+  TF+S+LSAC+H G V  G+  FS M E YG+ P +EHY  MV+L G
Sbjct: 618 FEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLG 677

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + EA+S I +KM  E    V+GA+L AC LH NV + E +AQ++FELEP+      
Sbjct: 678 RAGKLHEAWSFI-QKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHV 736

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  IY NA    DV RV   +  +GL+
Sbjct: 737 LLANIYANASLWKDVARVRTAMEKKGLQ 764



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 222/449 (49%), Gaps = 28/449 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+ C     +  G  +H  +    L      ++ L  +YA      +A +VFD+M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIR 211
             R   A  WN+L++GYA  G  E A+ +  +M+EE G  PD  T   VL ACA    + 
Sbjct: 287 PARDRVA--WNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALG 344

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
              +VH  AVR GF     V  A++D+Y KCG +  AR VFD + +++ +S+N+M+ GY 
Sbjct: 345 ACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYA 404

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   EA  +F+ M+  G D   V++ + L        L  G +VH  ++R G+E ++ 
Sbjct: 405 ENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVN 464

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + N+LI +Y K  + D A  +FD +  K  VSWN++I   +++    +A+  F +M+ + 
Sbjct: 465 VMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLEN 524

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGL 441
           V PD  T VS++ A A      + + L +  +  Y I   ++        ++++Y + G 
Sbjct: 525 VKPDSFTLVSIIPALA-----DISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGR 579

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFE 497
           +  A S+     +     + W A+++    HG+   G+ A +   E++      NE  F 
Sbjct: 580 VSIARSLFNSARDRHV--ITWNAMIHGYGSHGS---GKVAVELFEEMKSSGKVPNETTFL 634

Query: 498 LLIKIYGNAGRLDD-VERVERMLVDRGLE 525
            ++    +AG +D+  E    M  D GLE
Sbjct: 635 SVLSACSHAGLVDEGQEYFSSMKEDYGLE 663


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 265/445 (59%), Gaps = 9/445 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++G    + T  SLL     L  ++ G ++H  I  N +  +  + S L+ +Y     +
Sbjct: 335 LRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDV 394

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A  ++D  + R       +++ISGY   G  E A+ ++  + E+ ++P+  T   VL 
Sbjct: 395 RTARNLYD--AARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLP 452

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA +  + +G+++H   +R  +    +V +AL+DMYAKCG +  +  +F ++  KD ++
Sbjct: 453 ACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVT 512

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVL 319
           +NSM++ +  +G   EA D+FR M + G   + V ISS L A ASL  I  G ++HG ++
Sbjct: 513 WNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVII 572

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALI 376
           +  ++ D+   ++LI +Y+K G ++ A  +F+ MP K+ VSWNSII    AH    E++ 
Sbjct: 573 KGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVS 632

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           +  +M+ +G  PDH+TF++L+SACAH G V+ G +LF  M ++Y I+PR+EH+ACMV+LY
Sbjct: 633 FLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLY 692

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            R+G +D+A   I + M F+    +WGALL+AC +H NV + + A+Q+LF+L+P N   +
Sbjct: 693 SRSGRLDKAIQFIAD-MPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYY 751

Query: 497 ELLIKIYGNAGRLDDVERVERMLVD 521
            L+  I   AGR D V +V R++ D
Sbjct: 752 VLMSNINAVAGRWDGVSKVRRLMKD 776



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 174/343 (50%), Gaps = 14/343 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNK--GISSKLLRLYATFGLIDEAH 146
             +   +LL  C     +  G+++H R + +  L  +    + ++LL +Y       +A 
Sbjct: 31  SADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAV 90

Query: 147 QVFDQMSNRTA-FAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKA 203
            VF  +    A  + PWN LI G+   G +  A+  Y +M        PD  T P V+K+
Sbjct: 91  AVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKS 150

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA LG + +G  VH  A   G   D +V +AL+ MY+  G +  AR  FD +  +D + +
Sbjct: 151 CAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLW 210

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVL 319
           N M+ GYI  G +  A  +FR M ++G +P+   ++  L    A A LL  G Q+H   +
Sbjct: 211 NVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLS-GVQLHSLAV 269

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           + G+E ++ +AN+L+ +Y+K   LD A  LF+ +P+ D+V+WN +I    ++    EAL 
Sbjct: 270 KCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALG 329

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
            F  M R G  PD +T VSLL A   L  +K G+ +   ++  
Sbjct: 330 LFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRN 372



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 212/437 (48%), Gaps = 16/437 (3%)

Query: 40  RNRITTFSSYPKS---SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFAS 96
           R+ +  FS+ P++   S  P     + F      +L  +      +     +    T   
Sbjct: 87  RDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPY 146

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           ++++C  L AV  G  +HR      L  +  + S L+++Y+  GL+ +A   FD M  R 
Sbjct: 147 VVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRD 206

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                WN ++ GY + G+   A+ L+  M   G EP+  T    L  CA    +  G ++
Sbjct: 207 CVL--WNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQL 264

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  AV+ G   +  V N L+ MYAKC  +  A  +F+ +   DL+++N M++G + +GLL
Sbjct: 265 HSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLL 324

Query: 277 VEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
            EA  +F  M+ +G  PD V + S+   L + + L+ G +VHG+++R  V  D  + ++L
Sbjct: 325 DEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSAL 384

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDH 390
           + +Y K   +  A  L+D     DVV  +++I  +       +AL  F  +    + P+ 
Sbjct: 385 VDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNA 444

Query: 391 LTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           +T  S+L ACA + ++ +G+ +   V+   Y     VE  + ++++Y + G +D ++  I
Sbjct: 445 VTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVE--SALMDMYAKCGRLDLSH-YI 501

Query: 450 VEKMEFEASPVVWGALL 466
             KM  +   V W +++
Sbjct: 502 FSKMSLK-DEVTWNSMI 517


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 253/441 (57%), Gaps = 18/441 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S L  C  +  ++   ++H  + T  +  +  +++KLL + A    +  AH +F++M 
Sbjct: 6   FISTLFKCRNIFQIK---QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG-LGLIRV 212
            R   +  W+ +I G+ + G+YE     + ++   G +PD F+ P V+KAC   +GLI +
Sbjct: 63  ERDPVS--WSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI-M 119

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H   ++ G   D FV + LVDMYAKCG I  A+ +FDR+  KDL++   M+ GY  
Sbjct: 120 GRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAE 179

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-----VHGWVLRRGVEWDL 327
            G   E++ +F  M  +GF PD VA+ +I+   +  ++GA      VH +V  R    D+
Sbjct: 180 CGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACA--KLGAMNKARLVHDYVCARRYSLDV 237

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            +  ++I +Y+K G +D +  +FD M QK+V+SW+++I A   H +  EAL  F  M   
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNS 297

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G++P+ +TF+SLL AC+H G V  G +LFS+M   YG+ P V+HY CMV+L GRAG +D+
Sbjct: 298 GIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQ 357

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  +I E ME E    +W A L AC +H  V + E AA+ L  L+  N  ++ LL  IY 
Sbjct: 358 ALRLI-ENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYA 416

Query: 505 NAGRLDDVERVERMLVDRGLE 525
           NAGR  DV ++  ++  R L+
Sbjct: 417 NAGRWKDVAKIRNLMAKRRLK 437



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G         +++  C +L A+     +H  +       +  + + ++ +YA  G ID
Sbjct: 195 RDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSID 254

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + ++FD+M  +   +  W+++I  Y   G+  +A+ L+  M   G+ P++ TF  +L A
Sbjct: 255 SSREIFDRMEQKNVIS--WSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYA 312

Query: 204 CAGLGLIRVGEKV-HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           C+  GL+  G ++  L +V +G   D      +VD+  + G + +A
Sbjct: 313 CSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQA 358


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 251/472 (53%), Gaps = 17/472 (3%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  +P+  L    S+ Q++++       V   T  S+L  C  L  ++ G  +H      
Sbjct: 407 QTGYPEEAL----SLFQEMQNQKMKPNRV---TLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
            +  +    + L+ +YA  G    A   F++MS+R      WNSLI+GYA++G+  +AI 
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVT--WNSLINGYAQIGDPYNAID 517

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           +++++    + PD  T   V+ ACA L  +  G  +H   V+ GF  D  V NAL+DMYA
Sbjct: 518 MFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYA 577

Query: 241 KCGDIVKARTVFDRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           KCG +  A  +F++    KD +++N ++  Y+ +G   EA   F  M L  F P+ V   
Sbjct: 578 KCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFV 637

Query: 300 SILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S+L  A+ L   R G   H  +++ G   +  + NSLI +Y+K G+L  +  LF+ M  K
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHK 697

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           D VSWN+++     H     A+  F  M+   V  D ++FVS+LSAC H G V+ G ++F
Sbjct: 698 DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIF 757

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M +KY I P +EHYACMV+L GRAGL DE    I + M  E    VWGALL +C +H 
Sbjct: 758 HSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFI-KVMPVEPDAGVWGALLGSCRMHS 816

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           NV +GE A   L +LEP N  +F +L  IY  +GR  D  +    + D GL+
Sbjct: 817 NVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 222/429 (51%), Gaps = 15/429 (3%)

Query: 44  TTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
           + F S P  +P+ +L N      T+ +  +  ++     V+ G+     TF  +L+ C  
Sbjct: 84  SVFDSTP--NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
              ++ G+  H  I    L ++  I + L+ +Y+  G +  A +VFD+M  R   A  WN
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA--WN 199

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I+G ++  +  +A+  +  M+  GVEP   +   +      L  I +   +H     F
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH--GYVF 257

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
              F   V N L+D+Y+KCGD+  AR VFD++ ++D +S+ +M+ GY H+G  VE  ++F
Sbjct: 258 RRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 317

Query: 284 RGMILNGFDPDPV-AISSILANASLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M L     + V A+S+ LA A  + +  G ++HG  L++ ++ D+ +A  L+V+Y+K 
Sbjct: 318 DKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLL 397
           G+ ++A  LF  +  +D+V+W++II A  +     EAL  F++M+   + P+ +T +S+L
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            ACA L  +K+G+ +    V K  +   +     +V++Y + G    A +    +M    
Sbjct: 438 PACADLSLLKLGKSIHCFTV-KADMDSDLSTGTALVSMYAKCGFFTAALTTF-NRMS-SR 494

Query: 458 SPVVWGALL 466
             V W +L+
Sbjct: 495 DIVTWNSLI 503



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 209/375 (55%), Gaps = 19/375 (5%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           HG  L + I +++L     +++ L+ +YA  G  ++A Q+F  +  R   A  W+++I+ 
Sbjct: 352 HGCALQQRIDSDIL-----VATPLMVMYAKCGETEKAKQLFWGLQGRDLVA--WSAIIAA 404

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
             + G  E+A++L+ +M+ + ++P++ T   +L ACA L L+++G+ +H   V+     D
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
                ALV MYAKCG    A T F+R+ ++D++++NS++ GY   G    A D+F  + L
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 289 NGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +  +PD   +  ++   +LL     G  +HG +++ G E D  + N+LI +Y+K G L  
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 346 ACWLFDHMP-QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           A +LF+     KD V+WN II A+ ++    EA+  F QM  +   P+ +TFVS+L A A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           +L + + G    + +++   +S  +   + ++++Y + G +  +  +  E M+ + + V 
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNS-LIDMYAKCGQLXYSEKLFNE-MDHKDT-VS 701

Query: 462 WGALL--YACYLHGN 474
           W A+L  YA + HG+
Sbjct: 702 WNAMLSGYAVHGHGD 716



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 192/361 (53%), Gaps = 21/361 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  LL +C  L  +   +++H  I  +  + +  I+  L+ LY+ F   D A  VFD   
Sbjct: 35  YPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDLARSVFDSTP 90

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N +     WNS+I  Y    +Y +A+ +Y+ M E+G+EPD++TF  VLKAC G   ++ G
Sbjct: 91  NPSRIL--WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG 148

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
              H +  R G   D F+   LVDMY+K GD+ +AR VFD++  +D++++N+M+ G    
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 208

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSI------LANASLLRIGAQVHGWVLRRGVEWDL 327
               EA D FR M L G +P  V++ ++      L+N  L R    +HG+V RR  ++  
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR---SIHGYVFRR--DFSS 263

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERD 384
            ++N LI +YSK G +D A  +FD M  +D VSW +++  ++ +    E L  F++M+  
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 323

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V  + ++ VS   A A    ++ G+ +    +++   S  +     MV +Y + G  ++
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMV-MYAKCGETEK 382

Query: 445 A 445
           A
Sbjct: 383 A 383



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 200/392 (51%), Gaps = 15/392 (3%)

Query: 111 IKLHRLIPTNLLRKN--KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           I+L R I   + R++    +S+ L+ LY+  G +D A +VFDQM ++   +  W ++++G
Sbjct: 246 IELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS--WGTMMAG 303

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           YA  G + + + L+ +M+   V  ++ +      A A    +  G+++H  A++     D
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSD 363

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V   L+ MYAKCG+  KA+ +F  +  +DL+++++++   +  G   EA  +F+ M  
Sbjct: 364 ILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQN 423

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
               P+ V + SIL   A+ SLL++G  +H + ++  ++ DL    +L+ +Y+K G    
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A   F+ M  +D+V+WNS+I+ +++    + A+  F ++    + PD  T V ++ ACA 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
           L  +  G  +  ++V K G          ++++Y + G +  A   +  K +F    V W
Sbjct: 544 LNDLDQGTCIHGLIV-KLGFESDCHVKNALIDMYAKCGSLPSA-EFLFNKTDFTKDEVTW 601

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
             ++ A   +G+    + A     ++  +N H
Sbjct: 602 NVIIAAYMQNGH---AKEAISSFHQMRLENFH 630


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 261/482 (54%), Gaps = 24/482 (4%)

Query: 64  FPKTKLQALDSIIQDLESS--------------VQNGITVQTETFASLLETCYQLKAVEH 109
           +PK  +    SII   E S              V   ++    T  S+   C QL   + 
Sbjct: 303 YPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKL 362

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G  +H  +    L     +++ LL LY   G I  A  +F +MS++   +  W+++++ Y
Sbjct: 363 GRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIIS--WSTMVACY 420

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+ G   D + L+ +M ++ ++P+  T   VL+ACA +  +  G K+H  AV +GF  + 
Sbjct: 421 ADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMET 480

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            V  AL+DMY KC    KA  +F+R+  KD+I++  + +GY  +G++ E+  +FR M+ +
Sbjct: 481 TVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSS 540

Query: 290 GFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G  PD +A+  IL   S L I  Q   +H +V++ G E +  I  SLI VY+K   ++ A
Sbjct: 541 GTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDA 600

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAH 402
             +F  M  KDVV+W+SII A   H +  EAL  F QM       P+++TF+S+LSAC+H
Sbjct: 601 NKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSH 660

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G +K G  +F +MV KY + P  EHYA MV+L GR G +D A   ++  M  +A P +W
Sbjct: 661 SGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALD-VINNMPMQAGPDIW 719

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           GALL AC +H N+ MGE AA+ LF L+P++   + LL  IY          ++ R++ ++
Sbjct: 720 GALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEK 779

Query: 523 GL 524
            L
Sbjct: 780 RL 781



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 210/425 (49%), Gaps = 25/425 (5%)

Query: 30  QRRQKQQQISRNRITTFSSYPKSSPTPLLTN--QKAFPKTKLQALDSIIQDLESS----V 83
           +RR    ++ R  ++   S P   P PL     Q+    ++   L    + +E+S     
Sbjct: 73  RRRGLSMRVERKELSIRWSRPMERP-PLGGEGYQRDGASSRFTHLIIFTKIVENSELLKF 131

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
              +  +      LLETC    ++    +LH       L  +  I +KL  LYA +  I 
Sbjct: 132 HEWLMERRNLLVKLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYARYASIH 188

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-----EPDQFTFP 198
            AH++F +  +RT +   WN+L+  Y   GE+ + ++L+ QM           PD ++  
Sbjct: 189 HAHKLFQETPHRTVYL--WNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVS 246

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
             LK+CAGL  + +G+ +H    +     D FV +AL+D+Y KCG +  A  VF      
Sbjct: 247 IALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKP 306

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDP---VAISSILANASLLRIGAQV 314
           D++ + S+++GY   G    A   F  M+++    PDP   V+++S  A  S  ++G  V
Sbjct: 307 DVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSV 366

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KD 371
           HG+V R+G++  LC+ANSL+ +Y K G +  A  LF  M  KD++SW++++  ++    +
Sbjct: 367 HGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAE 426

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            + L  F +M    + P+ +T VS+L ACA + +++ G ++  + V  YG          
Sbjct: 427 TDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAV-NYGFEMETTVSTA 485

Query: 432 MVNLY 436
           ++++Y
Sbjct: 486 LMDMY 490


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 258/447 (57%), Gaps = 11/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+ S+L TC  + A++ G ++H  +     + N  + S L+ +YA  G +D A
Sbjct: 410 GLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA 469

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H +   ++     +  W +LISGYA+   + +A+  + +M   G++ D   F   + ACA
Sbjct: 470 HVILRTLTEDDVVS--WTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACA 527

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +  G ++H  +   G+  D  + NALV +YA+CG I +A   F++I  KD IS+N 
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNG 587

Query: 266 MLTGYIHHGLLVEAFDIF----RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           +++G+   G   +A  +F    R  +   F     A+S+  AN + ++ G Q+H  +++R
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAA-ANIANIKQGKQIHAMIIKR 646

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
           G + D+ ++N+LI  Y+K G ++ A   F  MP+K+ VSWN++I  +S+    +EA+  F
Sbjct: 647 GFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLF 706

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M++ G +P+H+TFV +LSAC+H+G V  G   F  M +++G+ P+  HYAC+V+L  R
Sbjct: 707 EKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISR 766

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG +  A   I E+M  E    +W  LL AC +H NV +GE AAQ L ELEP++   + L
Sbjct: 767 AGFLSRARKFI-EEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVL 825

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +Y  +G+ D  ++  +M+ +RG++
Sbjct: 826 LSNMYAVSGKWDCRDQTRQMMRNRGVK 852



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 199/387 (51%), Gaps = 11/387 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ASLL  C    A+  G +LH  +    +  +  +   LL LY     I  AH++F  +
Sbjct: 316 TVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF--L 373

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +T     WN ++  + +L    ++  ++ QM+ +G+ P+QFT+P +L+ C  +G + +
Sbjct: 374 TAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDL 433

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H   ++ GF F+ +V + L+DMYAK G +  A  +   +   D++S+ ++++GY  
Sbjct: 434 GEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQ 493

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           H L  EA   F+ M+  G   D +  SS +   A    L  G Q+H      G   DL I
Sbjct: 494 HNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSI 553

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+ +Y++ G++ +A   F+ +  KD +SWN +I   ++     +AL  F QM R  +
Sbjct: 554 GNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKL 613

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
                TF S +SA A++ ++K G+++ + M+ K G    +E    ++  Y + G I++A 
Sbjct: 614 EASFFTFGSAVSAAANIANIKQGKQIHA-MIIKRGFDSDIEVSNALITFYAKCGSIEDAR 672

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHG 473
               E    E + V W A++     HG
Sbjct: 673 REFCEMP--EKNDVSWNAMITGYSQHG 697



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 215/392 (54%), Gaps = 14/392 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           ++  ++    +FAS+L  C   +  + +  ++H  I  + L  +  IS+ L+ LYA  GL
Sbjct: 103 IEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGL 162

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           I  A +VFD +  + + +  W ++ISG+++ G  E+AI L+ +M   G+ P  + F  VL
Sbjct: 163 IISARKVFDNLCTKDSVS--WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVL 220

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
             C  + L  VGE++H    ++G   + +V NALV +Y++  + V A  VF ++ +KD +
Sbjct: 221 SGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV 280

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGW 317
           S+NS+++G    G    A ++F  M  +   PD V ++S+L    +N +L + G Q+H +
Sbjct: 281 SFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCK-GEQLHSY 339

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-DH--EA 374
           V++ G+  D+ +  +L+ +Y     +  A  +F     ++VV WN ++ A  K D+  E+
Sbjct: 340 VIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSES 399

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F QM+  G++P+  T+ S+L  C  +G++ +GE++ + ++ K G    V   + +++
Sbjct: 400 FRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI-KTGFQFNVYVCSVLID 458

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +Y + G +D A+  ++ +   E   V W AL+
Sbjct: 459 MYAKHGKLDTAH--VILRTLTEDDVVSWTALI 488



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 226/454 (49%), Gaps = 23/454 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI    +T+  LL+ C    ++    KLH  I          + +KL+ +Y   G +D  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+ M NR+  +  W+ +ISG+ E       + L+  M EE V P + +F  VL+AC+
Sbjct: 65  VKVFEDMPNRSVRS--WDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS 122

Query: 206 GLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           G  + IR  E++H   +  G      + N L+ +YAK G I+ AR VFD +  KD +S+ 
Sbjct: 123 GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWV 182

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRR 321
           +M++G+  +G   EA  +F  M   G  P P   SS+L+  +   L  +G Q+H  V + 
Sbjct: 183 AMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKY 242

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
           G   +  + N+L+ +YS+      A  +F  M  KD VS+NS+I   ++      AL  F
Sbjct: 243 GSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELF 302

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M+RD + PD +T  SLLSACA  G++  GE+L S ++ K GIS  +     +++LY  
Sbjct: 303 TKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVI-KAGISSDMIVEGALLDLYVN 361

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDN 492
              I  A+ M +       + V+W  +L A     N+    + + ++F       L P N
Sbjct: 362 CSDIKTAHEMFLTAQ--TENVVLWNVMLVAFGKLDNL----SESFRIFRQMQIKGLIP-N 414

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           +  +  +++   + G LD  E++   ++  G +F
Sbjct: 415 QFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF 448



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 7/297 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  +  +  GI      F+S +  C  ++A+  G ++H     +   ++  I + L+ L
Sbjct: 501 LKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSL 560

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G I EA+  F+++  + + +  WN LISG+A+ G  EDA+ ++ QM    +E   F
Sbjct: 561 YARCGRIKEAYLEFEKIDAKDSIS--WNGLISGFAQSGYCEDALKVFAQMNRAKLEASFF 618

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF   + A A +  I+ G+++H   ++ GF  D  V NAL+  YAKCG I  AR  F  +
Sbjct: 619 TFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEM 678

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVH 315
             K+ +S+N+M+TGY  HG   EA ++F  M   G  P+ V    +L+  S + +  +  
Sbjct: 679 PEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGL 738

Query: 316 GWVLRRGVEWDLCIANS----LIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           G+      E  L    +    ++ + S+ G L +A    + MP + D   W +++ A
Sbjct: 739 GYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSA 795



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 161/337 (47%), Gaps = 45/337 (13%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           ME  G+  +  T+  +L  C   G +   +K+H   ++ GFG +  + N LVD+Y   GD
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +     VF+ + N+ + S++ +++G++   +     D+F  MI     P  ++ +S+L  
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 305 ASLLRIG----AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
            S  RIG     Q+H  ++  G+     I+N LI +Y+K+G +  A  +FD++  KD VS
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 361 WNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W ++I   S+   + EA+  F +M   G+ P    F S+LS C  +    VGE+L + +V
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA-LV 239

Query: 418 EKYGISPRVEHYAC--MVNLYGR--------------------------AGLIDEAYS-- 447
            KYG S  +E Y C  +V LY R                          +GL  + +S  
Sbjct: 240 FKYGSS--LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDG 297

Query: 448 --MIVEKME---FEASPVVWGALLYACYLHGNVCMGE 479
              +  KM+    +   V   +LL AC  +G +C GE
Sbjct: 298 ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGE 334


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 170/479 (35%), Positives = 255/479 (53%), Gaps = 42/479 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  L ++C + KA   G +LH       L  N  + + ++ +YA+ G +D A
Sbjct: 126 GVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFA 185

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
             VFD+ S R A +F                              WN++ISGY + G +E
Sbjct: 186 RLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFE 245

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +AI  +++M+E  V P++ T   VL AC       +G+ +       GFG +  + NAL+
Sbjct: 246 EAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALI 305

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           DMY KCG+   AR +FD I  KD+IS+N+M+ GY +  L  EA  +F  M+ +   P+ V
Sbjct: 306 DMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDV 365

Query: 297 AISSIL-ANASL--LRIGAQVHGWV---LRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
               IL A A L  L +G  VH ++   LR      L    SLI +Y+K G ++ A  +F
Sbjct: 366 TFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASL--WTSLIDMYAKCGCIEAAERVF 423

Query: 351 DHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSV 406
             M  +++ SWN+++     H     AL  F +M   G+  PD +TFV +LSAC   G V
Sbjct: 424 RSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLV 483

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +G + F  M++ YGISP+++HY CM++L  RA   +EA  ++++ ME E    +WG+LL
Sbjct: 484 DLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEA-EILMKNMEMEPDGAIWGSLL 542

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            AC  HG V  GE  A++LF+LEP+N   F LL  IY  AGR DDV R+   L D+G++
Sbjct: 543 SACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMK 601



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 206/442 (46%), Gaps = 45/442 (10%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           SI+  L +S      ++   + +LLE C  +   +   ++H LI    L     + SKL+
Sbjct: 11  SILHFLPASDPPYKILEQHPYLNLLEKCKNINTFK---QIHSLIIKTGLNNTVFVQSKLI 67

Query: 134 RLYATF--GLIDEAHQVFDQ-MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
              A    G +  A  +F++   +     F WNSLI GY+       ++ L+ +M   GV
Sbjct: 68  HFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGV 127

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           +P+  TFP + K+C        G+++H  A++    F+  V  +++ MYA  G++  AR 
Sbjct: 128 QPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARL 187

Query: 251 VFDR-------------------------------IGNKDLISYNSMLTGYIHHGLLVEA 279
           VFD+                               I  KD++S+N+M++GY+  G   EA
Sbjct: 188 VFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEA 247

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVV 336
              F  M      P+   +  +L+     R   +G  +  WV   G   +L + N+LI +
Sbjct: 248 IVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDM 307

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTF 393
           Y K G+ D A  LFD + +KDV+SWN++I  +S      EAL  FE M R  V P+ +TF
Sbjct: 308 YCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTF 367

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           + +L ACA LG++ +G+ + + + +    S     +  ++++Y + G I EA   +   M
Sbjct: 368 LGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCI-EAAERVFRSM 426

Query: 454 EFEASPVVWGALLYACYLHGNV 475
               +   W A+L    +HG+ 
Sbjct: 427 H-SRNLASWNAMLSGFAMHGHA 447



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 4/139 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK-NKGISSKLLRLYA 137
            E  +++ +     TF  +L  C  L A++ G  +H  I  NL    N  + + L+ +YA
Sbjct: 352 FEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYA 411

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFT 196
             G I+ A +VF  M +R   +  WN+++SG+A  G  E A+AL+ +M  +G+  PD  T
Sbjct: 412 KCGCIEAAERVFRSMHSRNLAS--WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDIT 469

Query: 197 FPRVLKACAGLGLIRVGEK 215
           F  VL AC   GL+ +G +
Sbjct: 470 FVGVLSACTQAGLVDLGHQ 488


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 263/443 (59%), Gaps = 10/443 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G + +   + + +  C + +A+  G ++H  + T   R    + ++L+ +Y   G +D+A
Sbjct: 5   GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             V D+M  R+  +  W ++ISGY++   + +A+ L+ +M   G  P+++T   VL +C+
Sbjct: 65  RNVLDRMPERSVVS--WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   I  G++VH   V+  F    FV ++L+DMYAK  +I +AR VFD +  +D++S  +
Sbjct: 123 GPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTA 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRG 322
           +++GY   GL  EA D+FR +   G   + V  +++   L+  + L  G QVH  +LR+ 
Sbjct: 183 IISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 242

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           + + + + NSLI +YSK GKL  +  +FD+M ++ VVSWN+++     H   HE +  F+
Sbjct: 243 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 302

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + ++ V PD +T +++LS C+H G V  G  +F  +V++        HY C+++L GR+
Sbjct: 303 DLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRS 361

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +++A ++I E M FE++P +WG+LL AC +H NV +GE  AQKL E+EP+N  N+ +L
Sbjct: 362 GRLEKALNLI-ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVIL 420

Query: 500 IKIYGNAGRLDDVERVERMLVDR 522
             IY  AG   DV +V ++++++
Sbjct: 421 SNIYAAAGMWKDVFKVRKLMLEK 443


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 256/470 (54%), Gaps = 40/470 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C         + +H       +  +  + + +L  Y    LI  A QVFD +
Sbjct: 139 TFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDI 198

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+RT  +  WNS+I+GY+++G  ++AI L+ +M + GVE D FT   +L A +    + +
Sbjct: 199 SDRTIVS--WNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDL 256

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VHL  V  G   D  V NAL+DMYAKCG +  A+ VFD++ +KD++S+ SM+  Y +
Sbjct: 257 GRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYAN 316

Query: 273 HGLL-------------------------------VEAFDIFRGMILNGFDPDPVAISSI 301
            GL+                                EA ++F  M ++G  PD   + SI
Sbjct: 317 QGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSI 376

Query: 302 LA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L+   N   L +G Q H ++    +   + + NSLI +Y+K G L  A  +F  MP+K+V
Sbjct: 377 LSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNV 436

Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSWN II A   H    EA+  F+ M+  G+ PD +TF  LLSAC+H G V +G   F +
Sbjct: 437 VSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDI 496

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M+  + ISP VEHYACMV+L GR G + EA ++I +KM  +   VVWGALL AC ++GN+
Sbjct: 497 MISTFRISPGVEHYACMVDLLGRGGFLGEAMTLI-QKMPVKPDVVVWGALLGACRIYGNL 555

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + +   ++L EL   N   + LL  +Y  + R DD++++ +++ D G++
Sbjct: 556 EIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIK 605



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 220/461 (47%), Gaps = 54/461 (11%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +T   LL+ C  +K ++    +H  I  + L        KLL L    G +  AH +FDQ
Sbjct: 40  QTLHHLLDQCSSMKRLK---LVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQ 96

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +     F +  N LI GY+   +   ++ L+ QM   G  P+QFTFP VLKACA      
Sbjct: 97  IPQPNKFMY--NHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYW 154

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
               VH  A++ G G    V NA++  Y  C  I+ AR VFD I ++ ++S+NSM+ GY 
Sbjct: 155 EAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYS 214

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
             G   EA  +F+ M+  G + D   + S+L+ +S    L +G  VH +++  GVE D  
Sbjct: 215 KMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSI 274

Query: 329 IANSLIVVYSKDGKL-------------DQACW------------------LFDHMPQKD 357
           + N+LI +Y+K G L             D   W                  +F+HMP K+
Sbjct: 275 VTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKN 334

Query: 358 VVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           VVSWNSII    ++    EA+  F +M   GV+PD  T VS+LS C++ G + +G++   
Sbjct: 335 VVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHC 394

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + +   I+  V     ++++Y + G +  A  +       E + V W  ++ A  LHG 
Sbjct: 395 YICDNI-ITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP--EKNVVSWNVIIGALALHG- 450

Query: 475 VCMGETAAQKLFELE-----PDNEHNFELLIKIYGNAGRLD 510
              GE A +    ++     PD E  F  L+    ++G +D
Sbjct: 451 --FGEEAIEMFKSMQASGLYPD-EITFTGLLSACSHSGLVD 488



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 42/339 (12%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K+   D  I   +  +Q G+     T  SLL    +   ++ G  +H  I    +  + 
Sbjct: 214 SKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDS 273

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF-------------------------- 160
            +++ L+ +YA  G +  A  VFDQM ++   ++                          
Sbjct: 274 IVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVK 333

Query: 161 ---PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
               WNS+I    + G+Y +A+ L+ +M   GV PD  T   +L  C+  G + +G++ H
Sbjct: 334 NVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAH 393

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
                        + N+L+DMYAKCG +  A  +F  +  K+++S+N ++     HG   
Sbjct: 394 CYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGE 453

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANAS---LLRIG-----AQVHGWVLRRGVEWDLCI 329
           EA ++F+ M  +G  PD +  + +L+  S   L+ +G       +  + +  GVE   C+
Sbjct: 454 EAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACM 513

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
            + L     + G L +A  L   MP K DVV W +++ A
Sbjct: 514 VDLL----GRGGFLGEAMTLIQKMPVKPDVVVWGALLGA 548



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 38/267 (14%)

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           P    +  +L   S ++    VH  ++  G+   +     L+ +  ++G L  A  LFD 
Sbjct: 37  PTHQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQ 96

Query: 353 MPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACA-------- 401
           +PQ +   +N +I  +S  ++   +L+ F QM   G +P+  TF  +L ACA        
Sbjct: 97  IPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEA 156

Query: 402 ---HLGSVKVG---------ERLFSVMVEKYGISPR----------VEHYACMVNLYGRA 439
              H  ++K+G           L + +  +  +S R          +  +  M+  Y + 
Sbjct: 157 VIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKM 216

Query: 440 GLIDEAYSMIVEKMEF--EASPVVWGALLYACYLHGNVCMGETAAQKLF--ELEPDNEHN 495
           G  DEA  +  E ++   EA      +LL A   H N+ +G      +    +E D+   
Sbjct: 217 GFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVT 276

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDR 522
              LI +Y   G L   + V   ++D+
Sbjct: 277 -NALIDMYAKCGHLQFAKHVFDQMLDK 302


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 257/439 (58%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA +L+ C  L+A   G  +H  +       +  +   LL LY  FG  ++  +VF++M
Sbjct: 144 TFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEM 203

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                   PW+ +IS YA+  +  +A+ L+ QM    V P+QFTF  VL++CA +  +++
Sbjct: 204 PKHDVI--PWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQL 261

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   ++ G   + FV NAL+D+YAKCG +  +  +F  + N++ +++N+M+ GY+ 
Sbjct: 262 GKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQ 321

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCI 329
            G   +A  +++ M+        V  SS+L A ASL  + +G Q+H   L+   + D+ +
Sbjct: 322 SGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVV 381

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+LI +Y+K G +  A  +FD + ++D +SWN++I  +S      EAL  F+ M+    
Sbjct: 382 GNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETEC 441

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +P+ LTFVS+LSAC++ G + +G+  F  MV+ YGI P +EHY CMV L GR+G +D+A 
Sbjct: 442 VPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAV 501

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I E++  E +  VW ALL AC +H +V +G  +AQ++ +++P +E    LL  IY   
Sbjct: 502 KLI-EEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYART 560

Query: 507 GRLDDVERVERMLVDRGLE 525
            R + V  V + + ++G++
Sbjct: 561 RRWNSVASVRKFMKNKGVK 579



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/463 (28%), Positives = 236/463 (50%), Gaps = 15/463 (3%)

Query: 72  LDSIIQDLESSV-QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
           LD ++ DL S V + G  +    F ++L+    ++  E    LH  I       N  + +
Sbjct: 22  LDEVV-DLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGT 80

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            L+  YA  G ++ A Q FD ++ +   +  W  +++ YAE   ++D++ L+ +M   G 
Sbjct: 81  ALIDAYAVCGSVNSARQAFDAIACKDMVS--WTGMVACYAENDRFQDSLQLFAEMRMVGF 138

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
            P+ FTF  VLKAC GL    VG+ VH   ++  +  D +V   L+D+Y K GD      
Sbjct: 139 NPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLR 198

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
           VF+ +   D+I ++ M++ Y       EA ++F  M      P+    +S+L   A+   
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIEN 258

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-- 365
           L++G QVH  VL+ G++ ++ ++N+L+ VY+K G+LD +  LF  +P ++ V+WN++I  
Sbjct: 259 LQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318

Query: 366 HAHSKD-HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           +  S D  +AL  ++ M    V    +T+ S+L ACA L ++++G ++ S+ ++      
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
            V   A ++++Y + G I  A   +V  M  E   + W A++    +HG V     A Q 
Sbjct: 379 VVVGNA-LIDMYAKCGSIKNA--RLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQM 435

Query: 485 LFELEP-DNEHNFELLIKIYGNAGRLDDVER-VERMLVDRGLE 525
           + E E   N+  F  ++    NAG LD  +   + M+ D G+E
Sbjct: 436 MQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 158/306 (51%), Gaps = 9/306 (2%)

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M +R   +F   +LI GY +  + ++ + L+ ++  EG E + F F  +LK    +    
Sbjct: 1   MPDRNTVSFV--TLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAE 58

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +   +H    + G   + FV  AL+D YA CG +  AR  FD I  KD++S+  M+  Y 
Sbjct: 59  LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLC 328
            +    ++  +F  M + GF+P+    + +L          +G  VHG VL+   E DL 
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDG 385
           +   L+ +Y+K G  +    +F+ MP+ DV+ W+ +I  +++ +   EA+  F QM R  
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           VLP+  TF S+L +CA + ++++G+++    V K G+   V     ++++Y + G +D +
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQV-HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNS 297

Query: 446 YSMIVE 451
             + +E
Sbjct: 298 MKLFME 303


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 263/484 (54%), Gaps = 37/484 (7%)

Query: 76  IQDLESSVQNGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           ++   S +++G+  +   TF+++L        V+ G ++H  I          + S L+ 
Sbjct: 122 VKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVD 181

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAF-----------------------------PWNSL 165
           +YA  GL+  A QVFD++  R    +                              W ++
Sbjct: 182 MYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTM 241

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           I+G  + G   +A+ L+  M +EG+  DQ+TF  VL AC GL  ++ G+++H   +R G+
Sbjct: 242 ITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGY 301

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             + FV +ALVDMY KC  +  A  VF R+ NK+++S+ +ML GY  +G   EA  +F  
Sbjct: 302 NHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCD 361

Query: 286 MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           M  NG +PD   + S++   AN + L  GAQ H   L  G+   + ++N+LI +Y K G 
Sbjct: 362 MQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGS 421

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           ++ +  LFD M  +D VSW +++  ++   K +E +  FE+M   G+ PD +TF+++LSA
Sbjct: 422 IEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSA 481

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+  G V+ G++ F  M++ +GI P  +HY CM++L+GRAG ++EA + I  KM F    
Sbjct: 482 CSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFI-NKMPFSPDS 540

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           + W  LL +C L+GN  +G+ AA+ L EL+P N   + LL  IY   G+  +V ++ R +
Sbjct: 541 IGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGM 600

Query: 520 VDRG 523
            ++G
Sbjct: 601 REKG 604



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 223/497 (44%), Gaps = 80/497 (16%)

Query: 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           C + +      KLH LI  +L      + + L+  Y+  G I  A  VFD+M    +F++
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 161 -----------------------------PWNSLISGYAELGEYEDAIALYFQMEEEGV- 190
                                         WNSLISGY   G   +A+  Y  M ++GV 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
             ++ TF  +L   +  G + +G ++H   V+FGFG   FV ++LVDMYAK G +  A  
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 251 VFDRIGNKDLISYN-------------------------------SMLTGYIHHGLLVEA 279
           VFD +  ++++ YN                               +M+TG I +GL  EA
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVV 336
            D+FR M   G   D     S+L     LR    G ++H  ++R G   ++ + ++L+ +
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDM 314

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
           Y K   +  A  +F  M  K+VVSW +++  + ++    EA+  F  M+R+G+ PD  T 
Sbjct: 315 YCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTL 374

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            S++S+CA+L S++ G + F       G+   +     ++ LYG+ G I+++ + + ++M
Sbjct: 375 GSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDS-NQLFDEM 432

Query: 454 EFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            F    V W AL+  YA +   N  +       +  L+PD        I +     R   
Sbjct: 433 SFR-DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDA----VTFIAVLSACSRAGL 487

Query: 512 VER----VERMLVDRGL 524
           VER     E ML D G+
Sbjct: 488 VERGQQYFESMLKDHGI 504


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 162/511 (31%), Positives = 285/511 (55%), Gaps = 19/511 (3%)

Query: 28  RKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSI-IQDLESSVQNG 86
           R +R++     +      F +  + + T   T   A P  +   ++ I +Q  + + Q+ 
Sbjct: 22  RGRRKEATTTYTNGDALDFGASTEGTGTVKTTTSSA-PLDRNPTMNKIKLQTQQLAFQHP 80

Query: 87  ITVQTETFA------SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           +T   +T +      +LL +  +L+ ++   ++H  I  + L +++ + +KL+ L  T G
Sbjct: 81  VTRNFDTQSHSPVHEALLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAG 137

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            I  A ++F  + N  +F F  +SL+   ++ G   D +  Y +M   G     +TF  V
Sbjct: 138 SITYARRLFPTVPNPDSFLF--DSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSV 195

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           +KACA L  +R+G+++H   +  G+G D +V  AL+ +YAK  D+  A+ VFD +  + +
Sbjct: 196 IKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTI 255

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGW 317
           I++NS+++GY  +GL  E+  +F  M+ +GF PD   I S+L++ S    L  G  +H +
Sbjct: 256 IAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDY 315

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
               G + ++ +  SLI +Y++ G + +A  +FD M +++VV+W ++I     H    +A
Sbjct: 316 ADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQA 375

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  F +M   G  P+++TFV++LSACAH G +  G R+FS M E YG+ P VEH  CMV+
Sbjct: 376 MELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVD 435

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           ++GRAGL+++AY  I + +  E  P VW ++L AC +H N  +G   A+ +  +EP+N  
Sbjct: 436 MFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPG 495

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ++ +L  IY  AGR+D VE V  M+  R L+
Sbjct: 496 HYVMLSNIYALAGRMDRVEMVRNMMTRRRLK 526


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 261/470 (55%), Gaps = 41/470 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY---------------- 136
           T+++LL+ C QL+A++ G+K+H    T+       IS+++L +Y                
Sbjct: 91  TYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEM 150

Query: 137 ---------------ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
                          A  G + EA ++FDQM+ R  F+  W ++ SGY    ++E+A+ L
Sbjct: 151 AERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFS--WTAMTSGYVRHDQHEEALEL 208

Query: 182 YFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           +  M+  E  + ++FT    L A A +  + +G+++H   +R G   DG V +AL DMY 
Sbjct: 209 FRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYG 268

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG I +AR +FD+  ++D++S+ +M+  Y   G   E F +F  ++ +G  P+    S 
Sbjct: 269 KCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSG 328

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L   A+ +   +G QVHG++ R G +     A++L+ +Y+K G +  A  +F+ MP+ D
Sbjct: 329 VLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPD 388

Query: 358 VVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VSW S+I  ++++    EAL +FE + + G  PDH+TFV +LSAC H G V  G   F 
Sbjct: 389 LVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFD 448

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + EK+G++   +HYAC+++L  R+G + EA   I++KM  E    +W +LL  C +HGN
Sbjct: 449 SIKEKHGLTHTADHYACLIDLLSRSGRLQEAED-IIDKMPIEPDKFLWASLLGGCRIHGN 507

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + + + AA+ LFE+EP+N   +  L  IY  AG    V  V +++  RG+
Sbjct: 508 LKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGV 557



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 168/383 (43%), Gaps = 71/383 (18%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P   T+  +L+ C  L  +  G KVH      GF     + N ++DMY KC  +V A+ +
Sbjct: 87  PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRL 146

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF---DPDPVAI 298
           FD +  +DL S+N M++GY   G L EA  +F  M          + +G+   D    A+
Sbjct: 147 FDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEAL 206

Query: 299 SSILA----------------------NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
               A                          L +G ++HG +LR G++ D  + ++L  +
Sbjct: 207 ELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDM 266

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
           Y K G + +A  +FD    +DVVSW ++I  + K+    E    F  + + G+ P+  TF
Sbjct: 267 YGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTF 326

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
             +L+ACA   + ++G+++   M  + G  P     + +V++Y + G I  A  +     
Sbjct: 327 SGVLNACADHAAEELGKQVHGYMT-RIGFDPSSFAASTLVHMYTKCGNIKNARRV----- 380

Query: 454 EFEASP----VVWGALLYACYLHGNVCMGETAAQKLFEL------EPDNEHNFELLIKIY 503
            F   P    V W +L+     +G        A + FEL      +PD+   F  ++   
Sbjct: 381 -FNGMPRPDLVSWTSLISGYAQNGQ----PDEALQFFELLLKSGTQPDHI-TFVGVLSAC 434

Query: 504 GNAGRLDDVERVERMLVDRGLEF 526
            +AG           LVD+GLE+
Sbjct: 435 THAG-----------LVDKGLEY 446



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++GI     TF+ +L  C    A E G ++H  +       +   +S L+ +Y   G I
Sbjct: 315 LKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNI 374

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VF+ M      +  W SLISGYA+ G+ ++A+  +  + + G +PD  TF  VL 
Sbjct: 375 KNARRVFNGMPRPDLVS--WTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLS 432

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG-NKD 259
           AC   GL+  G + + D+++   G          L+D+ ++ G + +A  + D++    D
Sbjct: 433 ACTHAGLVDKGLE-YFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPD 491

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
              + S+L G   HG L  A      +     +P+  A  + LAN
Sbjct: 492 KFLWASLLGGCRIHGNLKLAKRAAEALF--EIEPENPATYTTLAN 534


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 263/443 (59%), Gaps = 10/443 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G + +   + + +  C + +A+  G ++H  + T   R    + ++L+ +Y   G +D+A
Sbjct: 37  GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDA 96

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             V D+M  R+  +  W ++ISGY++   + +A+ L+ +M   G  P+++T   VL +C+
Sbjct: 97  RNVLDRMPERSVVS--WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 154

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   I  G++VH   V+  F    FV ++L+DMYAK  +I +AR VFD +  +D++S  +
Sbjct: 155 GPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTA 214

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRG 322
           +++GY   GL  EA D+FR +   G   + V  +++   L+  + L  G QVH  +LR+ 
Sbjct: 215 IISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 274

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           + + + + NSLI +YSK GKL  +  +FD+M ++ VVSWN+++     H   HE +  F+
Sbjct: 275 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 334

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + ++ V PD +T +++LS C+H G V  G  +F  +V++        HY C+++L GR+
Sbjct: 335 DLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRS 393

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +++A ++I E M FE++P +WG+LL AC +H NV +GE  AQKL E+EP+N  N+ +L
Sbjct: 394 GRLEKALNLI-ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVIL 452

Query: 500 IKIYGNAGRLDDVERVERMLVDR 522
             IY  AG   DV +V ++++++
Sbjct: 453 SNIYAAAGMWKDVFKVRKLMLEK 475


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 263/443 (59%), Gaps = 10/443 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G + +   + + +  C + +A+  G ++H  + T   R    + ++L+ +Y   G +D+A
Sbjct: 5   GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             V D+M  R+  +  W ++ISGY++   + +A+ L+ +M   G  P+++T   VL +C+
Sbjct: 65  RNVLDRMPERSVVS--WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   I  G++VH   V+  F    FV ++L+DMYAK  +I +AR VFD +  +D++S  +
Sbjct: 123 GPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTA 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRG 322
           +++GY   GL  EA D+FR +   G   + V  +++   L+  + L  G QVH  +LR+ 
Sbjct: 183 IISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 242

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           + + + + NSLI +YSK GKL  +  +FD+M ++ VVSWN+++     H   HE +  F+
Sbjct: 243 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 302

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + ++ V PD +T +++LS C+H G V  G  +F  +V++        HY C+++L GR+
Sbjct: 303 DLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRS 361

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +++A ++I E M FE++P +WG+LL AC +H NV +GE  AQKL E+EP+N  N+ +L
Sbjct: 362 GRLEKALNLI-ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVIL 420

Query: 500 IKIYGNAGRLDDVERVERMLVDR 522
             IY  AG   DV +V ++++++
Sbjct: 421 SNIYAAAGMWKDVFKVRKLMLEK 443


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 262/448 (58%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+   + T ASLL    +L   + G ++H  I  N    +  + S L+ +Y     + 
Sbjct: 342 KSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVR 401

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  VFD  + ++      +++ISGY      E A+ ++  +   G++P+       L A
Sbjct: 402 MAQNVFD--ATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPA 459

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +R+G+++H   ++  +    +V +AL+DMY+KCG +  +  +F ++  KD +++
Sbjct: 460 CASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTW 519

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLR 320
           NSM++ +  +G   EA D+FR MI+ G   + V ISSIL A A L  I  G ++HG +++
Sbjct: 520 NSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIK 579

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
             +  DL   ++LI +Y K G L+ A  +F+HMP+K+ VSWNSII A   H    E++  
Sbjct: 580 GPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDL 639

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
              M+ +G   DH+TF++L+SACAH G V+ G RLF  M E+Y I P+VEH +CMV+LY 
Sbjct: 640 LCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYS 699

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +D+A   I + M F+    +WGALL+AC +H NV + E A+Q+LF+L+P N   + 
Sbjct: 700 RAGKLDKAMQFIAD-MPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYV 758

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L+  I   AGR D V ++ R++ D+ ++
Sbjct: 759 LMSNINAVAGRWDGVSKMRRLMKDKKVQ 786



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 140/472 (29%), Positives = 242/472 (51%), Gaps = 54/472 (11%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      T A  L  C     +  G++LH L     L     +++ L+ +YA    ++E
Sbjct: 242 SGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEE 301

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F  M         WN +ISG  + G  +DA+ L+  M++ G++PD  T   +L A 
Sbjct: 302 AWRLFGLMPRDDLVT--WNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPAL 359

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L   + G+++H   VR     D F+++ALVD+Y KC D+  A+ VFD   + D++  +
Sbjct: 360 TELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGS 419

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +M++GY+ + +   A  +FR ++  G  P+ V ++S L   A+ + +RIG ++HG+VL+ 
Sbjct: 420 TMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKN 479

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
             E    + ++L+ +YSK G+LD + ++F  M  KD V+WNS+I + +++    EAL  F
Sbjct: 480 AYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLF 539

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF---------------SVMVEKYG-- 421
            QM  +GV  +++T  S+LSACA L ++  G+ +                S +++ YG  
Sbjct: 540 RQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKC 599

Query: 422 ----ISPRV-EH--------YACMVNLYGRAGLIDEAYSMIVEKME--FEASPVVWGALL 466
               ++ RV EH        +  +++ YG  GL+ E+  ++    E  F+A  V + AL+
Sbjct: 600 GNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALI 659

Query: 467 YACYLHGNV--------CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
            AC   G V        CM E      + +EP  EH    ++ +Y  AG+LD
Sbjct: 660 SACAHAGQVQEGLRLFRCMTEE-----YHIEPQVEH-LSCMVDLYSRAGKLD 705



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 185/378 (48%), Gaps = 17/378 (4%)

Query: 57  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-R 115
           LL  +++F     + L +   +  SS  N         A LL  C     +  G+++H R
Sbjct: 3   LLRCRRSFKPPPRKWLSAAFSETASSATNASPCAYRLLA-LLRGCVAPSHLPLGLRIHAR 61

Query: 116 LIPTNLLRKN----KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYA 170
            + + LL         + ++L+ +Y       +A  VF  +    A A  PWN LI G+ 
Sbjct: 62  AVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFT 121

Query: 171 ELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
             G +  A+  Y +M        PD  T P V+K+CA LG + +G  VH      G   D
Sbjct: 122 MAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRD 181

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            +V +AL+ MYA  G +  AR VFD +  +D + +N M+ GY+  G +  A  +FR M  
Sbjct: 182 MYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRA 241

Query: 289 NGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           +G DP+   ++  L    A A LL  G Q+H   ++ G+E ++ +AN+L+ +Y+K   L+
Sbjct: 242 SGCDPNFATLACFLSVCAAEADLLS-GVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLE 300

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           +A  LF  MP+ D+V+WN +I    ++    +AL  F  M++ G+ PD +T  SLL A  
Sbjct: 301 EAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALT 360

Query: 402 HLGSVKVGERLFSVMVEK 419
            L   K G+ +   +V  
Sbjct: 361 ELNGFKQGKEIHGYIVRN 378



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 195/380 (51%), Gaps = 11/380 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   ++++C  L A+  G  +HR      L ++  + S L+++YA  GL+D A +VFD M
Sbjct: 149 TLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WN ++ GY + G+   A+ L+  M   G +P+  T    L  CA    +  
Sbjct: 209 DERDCVL--WNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLS 266

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  AV++G   +  V N LV MYAKC  + +A  +F  +   DL+++N M++G + 
Sbjct: 267 GVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQ 326

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
           +GL+ +A  +F  M  +G  PD V ++S+L   + L   + G ++HG+++R     D+ +
Sbjct: 327 NGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFL 386

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
            ++L+ +Y K   +  A  +FD     DVV  +++I  +        A+  F  +   G+
Sbjct: 387 VSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGI 446

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +   S L ACA + ++++G+ L   ++ K     R    + ++++Y + G +D ++
Sbjct: 447 KPNAVMVASTLPACASMAAMRIGQELHGYVL-KNAYEGRCYVESALMDMYSKCGRLDLSH 505

Query: 447 SMIVEKMEFEASPVVWGALL 466
            M   KM  +   V W +++
Sbjct: 506 YMF-SKMSAK-DEVTWNSMI 523



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 5/168 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     T +S+L  C  L A+ +G ++H +I    +R +    S L+ +Y   G +
Sbjct: 543 IMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNL 602

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A +VF+ M  +   +  WNS+IS Y   G  ++++ L   M+EEG + D  TF  ++ 
Sbjct: 603 ELALRVFEHMPEKNEVS--WNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALIS 660

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
           ACA  G ++ G ++    +   +  +  V  L+ +VD+Y++ G + KA
Sbjct: 661 ACAHAGQVQEGLRL-FRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKA 707


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 255/448 (56%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            +G+     T ASL+     L  + +G  +H  +       +  + + L+ +Y   G + 
Sbjct: 424 HSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQ 483

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +  +VF+  +NR   +  WN+L+SG+ +    +  + ++ QM  EG  P+ +TF  +L++
Sbjct: 484 DGCRVFEATTNRDLIS--WNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRS 541

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ L  + +G++VH   V+     + FV  ALVDMYAK   +  A T+F+R+  +DL ++
Sbjct: 542 CSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAW 601

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR 320
             ++ GY   G   +A   F  M   G  P+   ++S L+  S    L  G Q+H   ++
Sbjct: 602 TVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK 661

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIY 377
            G   D+ +A++L+ +Y+K G ++ A  +FD +  +D VSWN+II     H +  +AL  
Sbjct: 662 AGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKA 721

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE M  +G +PD +TF+ +LSAC+H+G ++ G++ F+ + + YGI+P +EHYACMV++ G
Sbjct: 722 FEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILG 781

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG   E  S I E+M+  ++ ++W  +L AC +HGN+  GE AA KLFELEP+ + N+ 
Sbjct: 782 RAGKFHEVESFI-EEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYI 840

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  ++   G  DDV  V  ++  RG++
Sbjct: 841 LLSNMFAAKGMWDDVTNVRALMSTRGVK 868



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 207/389 (53%), Gaps = 12/389 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T+A+ L+ C     +E G ++H          +  + S L+ LYA  G + 
Sbjct: 222 REGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VF  M  + A +  WN+L++G+A++G+ E  + L+ +M    +   +FT   VLK 
Sbjct: 282 LAERVFLCMPKQNAVS--WNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG 339

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA  G +R G+ VH  A+R G   D F+   LVDMY+KCG    A  VF RI + D++S+
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSW 399

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR 320
           ++++T     G   EA ++F+ M  +G  P+   ++S+++ A+    L  G  +H  V +
Sbjct: 400 SAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK 459

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIY 377
            G E+D  + N+L+ +Y K G +   C +F+    +D++SWN+++   H +      L  
Sbjct: 460 YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRI 519

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM  +G  P+  TF+S+L +C+ L  V +G+++ + +V K  +         +V++Y 
Sbjct: 520 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIV-KNSLDGNDFVGTALVDMYA 578

Query: 438 RAGLIDEA---YSMIVEKMEFEASPVVWG 463
           +   +++A   ++ ++++  F  + +V G
Sbjct: 579 KNRFLEDAETIFNRLIKRDLFAWTVIVAG 607



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 197/383 (51%), Gaps = 19/383 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           ++ +L TC     +  G  +H  +  + +  +  + + L+ +YA  G  + A +VF ++ 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R   +  W +LI+G+   G    A+ L+ +M  EGVE ++FT+   LKAC+    +  G
Sbjct: 191 ERDVVS--WTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFG 248

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           ++VH +A++ G   D FV +ALVD+YAKCG++V A  VF  +  ++ +S+N++L G+   
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   +  ++F  M  +  +     +S++L   AN+  LR G  VH   +R G E D  I+
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
             L+ +YSK G    A  +F  +   DVVSW++II       +  EA   F++M   GV+
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI 428

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+  T  SL+SA   LG +  GE + +  V KYG          +V +Y + G + +   
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHAC-VCKYGFEYDNTVCNALVTMYMKIGSVQDGCR 487

Query: 448 MIVEKMEFEASP----VVWGALL 466
           +      FEA+     + W ALL
Sbjct: 488 V------FEATTNRDLISWNALL 504



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 187/376 (49%), Gaps = 33/376 (8%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +  D+ ++     +  G      TF S+L +C  L  V+ G ++H  I  N L  N  + 
Sbjct: 511 ETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG 570

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +YA    +++A  +F+++  R  FA  W  +++GYA+ G+ E A+  + QM+ EG
Sbjct: 571 TALVDMYAKNRFLEDAETIFNRLIKRDLFA--WTVIVAGYAQDGQGEKAVKCFIQMQREG 628

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V+P++FT    L  C+ +  +  G ++H  A++ G   D FV +ALVDMYAKCG +  A 
Sbjct: 629 VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309
            VFD + ++D +S+N+++ GY  HG   +A   F  M+  G  PD V    +L+  S   
Sbjct: 689 VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS--- 745

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
                H  ++  G +      NSL  +Y     ++    + D            I+    
Sbjct: 746 -----HMGLIEEGKKH----FNSLSKIYGITPTIEHYACMVD------------ILGRAG 784

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-H 428
           K HE   + E+M+   +  + L + ++L AC   G+++ GER     ++ + + P ++ +
Sbjct: 785 KFHEVESFIEEMK---LTSNVLIWETVLGACKMHGNIEFGER---AAMKLFELEPEIDSN 838

Query: 429 YACMVNLYGRAGLIDE 444
           Y  + N++   G+ D+
Sbjct: 839 YILLSNMFAAKGMWDD 854


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 236/388 (60%), Gaps = 10/388 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKA 203
           AH+VF ++  +    F WN+LI GYAE+G    A++LY +M   G VEPD  T+P +LKA
Sbjct: 72  AHKVFSKI-EKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKA 130

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +  +R+GE +H   +R GFG   +V N+L+ +YA CGD+  A  VFD++  KDL+++
Sbjct: 131 VGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NS++ G+  +G   EA  ++  M L G  PD   I S+L   A    L +G + H ++++
Sbjct: 191 NSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK 250

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIY 377
            G+  +L  +N L+ +Y++ G++++A  LFD M  K+ VSW S+I     +    EA+  
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIEL 310

Query: 378 FEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           F+ ME ++G+LP  +TFV +L AC+H G VK G   F  M E+Y I PR+EH+ CMV+L 
Sbjct: 311 FKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLL 370

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            RAG + +AY  I+ KM  + + V+W  LL AC +HG+  + E A  K+ +LEP++  ++
Sbjct: 371 ARAGQVKKAYEYIL-KMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDY 429

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL  +Y +  R  DV+++ + ++  G+
Sbjct: 430 VLLSNMYASEQRWSDVQKIRKQMLRDGV 457



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 156/287 (54%), Gaps = 16/287 (5%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T T+  LL+   ++  V  G  +H ++  +       + + LL LYA  G +  A++VFD
Sbjct: 121 THTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD 180

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  +   A  WNS+I+G+AE G+ E+A+ALY +M+ +G++PD FT   +L ACA +G +
Sbjct: 181 KMPEKDLVA--WNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGAL 238

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G++ H+  ++ G   +    N L+D+YA+CG + +A+T+FD + +K+ +S+ S++ G 
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298

Query: 271 IHHGLLVEAFDIFRGM-ILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDL-- 327
             +GL  EA ++F+ M    G  P  +    IL   S   +  +   +  R   E+ +  
Sbjct: 299 AVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEP 358

Query: 328 ------CIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
                 C+ + L    ++ G++ +A      MP Q +VV W +++ A
Sbjct: 359 RIEHFGCMVDLL----ARAGQVKKAYEYILKMPMQPNVVIWRTLLGA 401



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 19/199 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  SLL  C ++ A+  G + H  +    L +N   S+ LL LYA  G ++EA
Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEA 276

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKAC 204
             +FD+M ++ + +  W SLI G A  G  ++AI L+  ME +EG+ P + TF  +L AC
Sbjct: 277 KTLFDEMVDKNSVS--WTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYAC 334

Query: 205 AGLGLI--------RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA-RTVFDRI 255
           +  G++        R+ E+  ++     FG        +VD+ A+ G + KA   +    
Sbjct: 335 SHCGMVKEGFEYFRRMSEEYKIEPRIEHFG-------CMVDLLARAGQVKKAYEYILKMP 387

Query: 256 GNKDLISYNSMLTGYIHHG 274
              +++ + ++L     HG
Sbjct: 388 MQPNVVIWRTLLGACTVHG 406


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 256/463 (55%), Gaps = 25/463 (5%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      T+  L + C +L  +  G ++   +       +  +S+ ++ L  + G +D 
Sbjct: 73  DGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDG 132

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++FD+   R   +  WNS+I+GY   G   +A+  Y +M+ EG++PD+ T   V+ +C
Sbjct: 133 ARKMFDKSCVRDLVS--WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSC 190

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK------ 258
           A L  + +G + H      G      + NAL+DMY KCG++  AR +FD + NK      
Sbjct: 191 AQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWT 250

Query: 259 ----------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS-- 306
                     D++ +N+M+ GY+H     EA  +F  M     +PD V + S L+  S  
Sbjct: 251 TMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQL 310

Query: 307 -LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             L +G  +H ++ +  +  ++ +  +LI +Y+K GK+ +A  +F  +P ++ ++W +II
Sbjct: 311 GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAII 370

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                H   H A+ YF +M  + V+PD +TF+ LLSAC H G V+ G + FS M  K+ +
Sbjct: 371 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 430

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           SP+++HY+CMV+L GRAGL++EA  +I + M  EA  VVWGAL +AC +HGNV MGE AA
Sbjct: 431 SPKLKHYSCMVDLLGRAGLLEEAEELI-KSMPIEADAVVWGALFFACRIHGNVLMGERAA 489

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            KL +++P +   + LL  +YG A    +  +  +++  RG+E
Sbjct: 490 SKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVE 532



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 188/345 (54%), Gaps = 26/345 (7%)

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + R    F WN  I G+ +     +A+ LY + ++ +G +PD +T+P + KACA L LIR
Sbjct: 37  NTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIR 96

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G ++    +  GF  D FV NA++ +   CGD+  AR +FD+   +DL+S+NSM+ GY+
Sbjct: 97  MGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYV 156

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLC 328
             G   EA + +R M + G  PD V +  ++++ + L    +G + H ++   G++  + 
Sbjct: 157 RRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVP 216

Query: 329 IANSLIVVYSKDGKLDQA-------------CW---LFDHMPQKDVVSWNSIIHAH---S 369
           +AN+L+ +Y K G L+ A              W   LFD MP KDVV WN++I  +   +
Sbjct: 217 LANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHAN 276

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           +  EAL  F +M+   + PD +T VS LSAC+ LG++ VG  +    +EK+ +S  V   
Sbjct: 277 RGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY-IEKHELSLNVALG 335

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             ++++Y + G I +A  +  E      + + W A++    LHGN
Sbjct: 336 TALIDMYAKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGN 378


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 246/448 (54%), Gaps = 12/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     T +S+L  C  L      + +H     + L     + + L+ +Y   G++
Sbjct: 160 VGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGML 219

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EAH VF  M+ R      WNS+IS   + G+   A+ L+  M E GV PD  T   +  
Sbjct: 220 TEAHWVFGGMALRDLVT--WNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLAS 277

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           A A  G     + VH    R G+     +  NA+VDMYAK   I  A+ VFD + ++D++
Sbjct: 278 AVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVV 337

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANASLL---RIGAQVHGW 317
           S+N+++TGY+ +GL  EA  I+  M  + G  P      S+L   S L   + G ++H  
Sbjct: 338 SWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHAL 397

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            ++ G+  D+ +   LI +Y+K GKL +A +LF+HMP++    WN+II     H    +A
Sbjct: 398 SIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKA 457

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F QM+++ + PDH+TFVSLL+AC+H G V  G   F +M   YGI P  +HY CMV+
Sbjct: 458 LSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVD 517

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           + GRAG +DEA+  I + M  +    VWGALL AC +HGNV MG+ A+Q LFEL+P+N  
Sbjct: 518 MLGRAGQLDEAFEFI-QSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVG 576

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522
            + L+  +Y   G+ D V+ V R LV R
Sbjct: 577 YYVLMSNMYAKIGKWDGVDAV-RSLVRR 603



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 218/405 (53%), Gaps = 24/405 (5%)

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
            LL  N   S  L+  Y  FG + EA++VFD+M  R   A  WN+++SG        DA+
Sbjct: 96  GLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPA--WNAMLSGLCRNTRAADAV 153

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
            L  +M  EGV  D  T   VL  C  LG   +   +H+ AV+ G   + FV NAL+D+Y
Sbjct: 154 TLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVY 213

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
            K G + +A  VF  +  +DL+++NS+++     G +  A ++F GM+ +G  PD + + 
Sbjct: 214 GKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLV 273

Query: 300 SILANASLL--RIGAQ-VHGWVLRRGVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           S+ +  +     +GA+ VH +V RRG +  D+   N+++ +Y+K  K+D A  +FD++P 
Sbjct: 274 SLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPD 333

Query: 356 KDVVSWNSIIHAHSKD---HEAL-IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +DVVSWN++I  + ++   +EA+ IY +    +G+ P   TFVS+L A ++LG ++ G R
Sbjct: 334 RDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR 393

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           + ++ + K G++  V    C+++LY + G + EA  +          P  W A++    +
Sbjct: 394 MHALSI-KTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP--WNAIIAGLGV 450

Query: 472 HGNVCMGETAAQKLF------ELEPDNEHNFELLIKIYGNAGRLD 510
           HG+       A  LF      E++PD+   F  L+    +AG +D
Sbjct: 451 HGH----GAKALSLFSQMQQEEIKPDHV-TFVSLLAACSHAGLVD 490



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 14/265 (5%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKA 248
           + PD FTFP +++A  G        ++H  A+R G      F   +LV  Y + G + +A
Sbjct: 65  LRPDSFTFPPLVRAAPGPA---SAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
             VFD +  +D+ ++N+ML+G   +    +A  +   M+  G   D V +SS+L    +L
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVL 181

Query: 309 ---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
               +   +H + ++ G+  +L + N+LI VY K G L +A W+F  M  +D+V+WNSII
Sbjct: 182 GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSII 241

Query: 366 HAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG- 421
            A+    K   A+  F  M   GV PD LT VSL SA A  G  ++G +     V + G 
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGD-ELGAKSVHCYVRRRGW 300

Query: 422 -ISPRVEHYACMVNLYGRAGLIDEA 445
            +   +   A MV++Y +   ID A
Sbjct: 301 DVGDIIAGNA-MVDMYAKMSKIDAA 324


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/482 (32%), Positives = 268/482 (55%), Gaps = 13/482 (2%)

Query: 50  PKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEH 109
           P+SS   ++    AF ++   AL    +  E SVQ+       TF+S+L+ C ++KA+  
Sbjct: 84  PESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQH----DKFTFSSVLKACSRMKALRE 139

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H LI  +  + N+ + + L+++YA  G I  A  VFD M  R+  A  WNS++SGY
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA--WNSMLSGY 197

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            + G +++ + L+ ++ E  +E D  T   VL AC  L  + +GE +    V  G   + 
Sbjct: 198 TKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNN 257

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            +  +L+DMYAKCG +  AR +FD +  +D++++++M++GY       EA ++F  M   
Sbjct: 258 TLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKG 317

Query: 290 GFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
              P+ V + S+L + ++L     G  VH ++ ++ ++  + +   LI  Y+K G +D++
Sbjct: 318 NVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRS 377

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  M  K+V +W ++I   + + E   AL +F  M  + V P+ +TF+ +LSAC+H 
Sbjct: 378 VEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHA 437

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
             V  G  LF+ M   + I PR+EHY CMV++ GRAG ++EAY  I + M F  + VVW 
Sbjct: 438 CLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFI-DNMPFPPNAVVWR 496

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            LL +C  H N+ M E + + +  LEP +  ++ LL   Y   GR++D  RV  ++ ++ 
Sbjct: 497 TLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKE 556

Query: 524 LE 525
           ++
Sbjct: 557 IK 558



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 190/331 (57%), Gaps = 11/331 (3%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           ID A  +F+ +    + A+  N +I G A     ++A+ L+ +M E+ V+ D+FTF  VL
Sbjct: 71  IDYALSIFNHIDKPESSAY--NVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVL 128

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           KAC+ +  +R GE+VH   ++ GF  + FV N L+ MYA CG I  AR VFD +  + ++
Sbjct: 129 KACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIV 188

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           ++NSML+GY  +GL  E   +FR ++    + D V + S+L      + L IG  +  ++
Sbjct: 189 AWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYI 248

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
           + +G+  +  +  SLI +Y+K G++D A  LFD M ++DVV+W+++I  +++     EAL
Sbjct: 249 VSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEAL 308

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +M++  V P+ +T VS+L +CA LG+ + G +     ++K  +   V     +++ 
Sbjct: 309 NLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDF 367

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           Y + G ID +   + ++M F+ +   W AL+
Sbjct: 368 YAKCGYIDRSVE-VFKEMSFK-NVFTWTALI 396


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/511 (32%), Positives = 262/511 (51%), Gaps = 75/511 (14%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT---- 138
           ++ GI     T  ++L +    + +E G K+H  I    LR N  +S+ LL +YA     
Sbjct: 138 MREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 139 ---------------------------FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
                                       G +D A   F+QM+ R      WNS+ISGY +
Sbjct: 198 MMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVT--WNSMISGYNQ 255

Query: 172 LGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
            G    A+ ++ +M  +  + PD+FT   VL ACA L  + +GE++H   V  GF   G 
Sbjct: 256 RGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGI 315

Query: 231 VLNALVDMYAKCG---------------------------------DIVKARTVFDRIGN 257
           VLNAL+ MY++CG                                 D+ +A+ +FD + +
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKD 375

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQV 314
           +D++++ +M+ GY  HGL  EA ++FR M+     P+   ++++L+ AS L     G Q+
Sbjct: 376 RDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQI 435

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA---HSK 370
           HG  ++ G  + + ++N+LI +Y+K G +  A   FD +  ++D VSW S+I A   H  
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EAL  FE M  +G+ PDH+T+V + SAC H G V  G + F +M +   I P + HYA
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L+GRAGL+ EA   I EKM  E   V WG+LL AC ++ N+ +G+ AA++L  LEP
Sbjct: 556 CMVDLFGRAGLLQEAQEFI-EKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEP 614

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           +N   +  L  +Y   G+ ++  ++ + + D
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKD 645



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 199/438 (45%), Gaps = 85/438 (19%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  YA  G +D + + FD++  R + +  W ++I GY  +G+Y  AI +  +M  EG+E
Sbjct: 86  VLSAYAKRGDMDSSCEFFDRLPQRDSVS--WTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P QFT   VL + A    +  G+KVH   V+ G   +  V N+L++MYAKCGD + A+ V
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 252 FDR-------------------------------IGNKDLISYNSMLTGYIHHGLLVEAF 280
           FDR                               +  +D++++NSM++GY   G  + A 
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 281 DIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
           D+F  M+ +    PD   ++S+L   AN   L IG Q+H  ++  G +    + N+LI +
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 337 YS---------------------------------KDGKLDQACWLFDHMPQKDVVSWNS 363
           YS                                 K G +++A  +FD +  +DVV+W +
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTA 383

Query: 364 II---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     H    EA+  F  M  +   P+  T  ++LS  + L S+  G+++    V K 
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAV-KS 442

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           G    V     ++ +Y +AG I  A S   + +  E   V W +++ A   HG+      
Sbjct: 443 GEIYSVSVSNALITMYAKAGSITSA-SRAFDLIRCERDTVSWTSMIIALAQHGHA----E 497

Query: 481 AAQKLFE------LEPDN 492
            A +LFE      L PD+
Sbjct: 498 EALELFETMLMEGLRPDH 515



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 133/263 (50%), Gaps = 41/263 (15%)

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            F  N ++  YAK GD+  +   FDR+  +D +S+ +M+ GY + G   +A  I   M+ 
Sbjct: 80  AFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMR 139

Query: 289 NGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G +P    ++++LA+ +  R    G +VH ++++ G+  ++ ++NSL+ +Y+K G    
Sbjct: 140 EGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSK----------------------------------D 371
           A  +FD M  KD+ SWN++I  H +                                  D
Sbjct: 200 AKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYD 259

Query: 372 HEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHY 429
             AL  F +M RD +L PD  T  S+LSACA+L  + +GE++ S ++   + IS  V + 
Sbjct: 260 LRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLN- 318

Query: 430 ACMVNLYGRAGLIDEAYSMIVEK 452
             ++++Y R G ++ A  +I ++
Sbjct: 319 -ALISMYSRCGGVETARRLIEQR 340



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 47/347 (13%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           NQ+ +    L+ALD   + L  S+   ++    T AS+L  C  L+ +  G ++H  I T
Sbjct: 254 NQRGYD---LRALDMFSKMLRDSM---LSPDRFTLASVLSACANLEKLCIGEQIHSHIVT 307

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE----- 174
                +  + + L+ +Y+  G ++ A ++ +Q   +      + +L+ GY +LG+     
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAK 367

Query: 175 --------------------------YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
                                     Y +AI L+  M  E   P+ +T   +L   + L 
Sbjct: 368 NIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLA 427

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYNSML 267
            +  G+++H  AV+ G  +   V NAL+ MYAK G I  A   FD I   +D +S+ SM+
Sbjct: 428 SLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMI 487

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVE 324
                HG   EA ++F  M++ G  PD    V + S   +A L+  G Q   + + + V+
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY--FDMMKDVD 545

Query: 325 W---DLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
                L     ++ ++ + G L +A    + MP + DVV+W S++ A
Sbjct: 546 KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 46/193 (23%)

Query: 293 PDPVAISSIL----------ANASLLRIGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           P P+++S++L           N S  R  AQ VH  V++ G+ + + + N+L+ VYSK G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKD------------------------------ 371
               A  LFD MP +   SWN+++ A++K                               
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 372 ----HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
               H+A+    +M R+G+ P   T  ++L++ A    ++ G+++ S +V K G+   V 
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIV-KLGLRGNVS 182

Query: 428 HYACMVNLYGRAG 440
               ++N+Y + G
Sbjct: 183 VSNSLLNMYAKCG 195


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 245/404 (60%), Gaps = 10/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME- 186
           I  +L+  Y   G   +A ++FD++ ++   +  WNSLISG++   +    + L F+M  
Sbjct: 75  IGDQLVSSYVELGCTKDALELFDELPDKDLVS--WNSLISGFSRRADLGICLGLLFRMRF 132

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           E G++P++ T   V+ ACAG+G + VG+ +H  AV+ G   +  V+N+L+++Y KCG + 
Sbjct: 133 EMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLE 192

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
            A  +F+ +  + L+S+NSM+  ++H GL  +    F  M   G + D   + S+L    
Sbjct: 193 AACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACE 252

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           N  + ++   VHG++L  G++ +L IA +L+ +Y+K G L  +C +F  M   D V+W +
Sbjct: 253 NLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTA 312

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           ++ +   H +  EA+ +FE M R+GV+PDH+TF  LLSAC+H G V+ G+  F +M E Y
Sbjct: 313 MLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFY 372

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           G+  RVEHY+CMV+L GR+G +++AY +I + M  E +  VWGAL+ AC + GN+ +G+ 
Sbjct: 373 GVELRVEHYSCMVDLLGRSGHLNDAYKLI-KSMPMEPNSGVWGALIGACRVRGNIELGKE 431

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A++LF L+P +  N+  L  +Y  AG+  D  +V  ++ +R L
Sbjct: 432 VAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVL 475



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD-IFRGMI 287
           GF+ + LV  Y + G    A  +FD + +KDL+S+NS+++G+     L      +FR   
Sbjct: 73  GFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRF 132

Query: 288 LNGFDPDPVA---ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
             G  P+ V    + S  A    L +G  +HG  ++ G+  ++ + NSLI +Y K G L+
Sbjct: 133 EMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLE 192

Query: 345 QACWLFDHMPQKDVVSWNSI--IHAHSKDHEALI-YFEQMERDGVLPDHLTFVSLLSACA 401
            AC LF+ M  + +VSWNS+  +H H    E  I YF  M R G+  D  T VSLL AC 
Sbjct: 193 AACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACE 252

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           +LG  K+ E +   ++   G+   +     +++LY + G + ++  +    +  +A  V 
Sbjct: 253 NLGVRKLAEAVHGYILNG-GLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDA--VA 309

Query: 462 WGALLYACYLHG 473
           W A+L +  +HG
Sbjct: 310 WTAMLSSYAMHG 321



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  SLL  C  L   +    +H  I    L  N  I++ LL LYA  G + ++
Sbjct: 236 GINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDS 295

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF  M N  A A  W +++S YA  G   +AI  +  M  EGV PD  TF  +L AC+
Sbjct: 296 CKVFGGMINPDAVA--WTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACS 353

Query: 206 GLGLIRVGEK 215
             GL+  G+ 
Sbjct: 354 HSGLVEEGKN 363


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 261/444 (58%), Gaps = 9/444 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G    + T  SLL     L  ++ G ++H  I  N +  +  + S L+ +Y     + 
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVR 395

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  ++D  + R       +++ISGY   G  E+A+ ++  + E+ ++P+  T   VL  
Sbjct: 396 MAQNLYD--AARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPG 453

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  + +G+++H   +R  +    +V +AL+DMYAKCG +  +  +F ++  KD +++
Sbjct: 454 CASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTW 513

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLR 320
           NSM++ +  +G   EA D+FR M + G   + + IS+ L A ASL  I  G ++HG  ++
Sbjct: 514 NSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIK 573

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
             ++ D+   ++LI +Y+K G L+ A  +F+ MP K+ VSWNSII A   H    E++  
Sbjct: 574 GPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSL 633

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
              M+ +G  PDH+TF++L+SACAH G V+ G +LF  M +KY I+PR+EH+ACMV+LY 
Sbjct: 634 LHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYS 693

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R+G +D+A   I + M F+    +WGALL+AC +H NV + + A+Q+LF+L+P N   + 
Sbjct: 694 RSGKLDKAIQFIAD-MPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYV 752

Query: 498 LLIKIYGNAGRLDDVERVERMLVD 521
           L+  I   AGR D V +V R++ D
Sbjct: 753 LMSNINAVAGRWDGVSKVRRLMKD 776



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 241/480 (50%), Gaps = 44/480 (9%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           +D  ++   +   +G      T A  L  C     +  G +LH L     L     +++ 
Sbjct: 223 VDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANT 282

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           LL +YA    +D+A ++F+ M         WN +ISG  + G + +A  L++ M+  G  
Sbjct: 283 LLAMYAKCQCLDDAWRLFELMPQDDLVT--WNGMISGCVQNGLFVEAFGLFYDMQRSGAR 340

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD  T   +L A   L  ++ G++VH   VR     D F+++ALVD+Y KC D+  A+ +
Sbjct: 341 PDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNL 400

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           +D     D++  ++M++GY+ +G+  EA  +FR ++     P+ V I+S+L   A+ + L
Sbjct: 401 YDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAAL 460

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +G Q+HG+VLR   E    + ++L+ +Y+K G+LD + ++F  M QKD V+WNS+I + 
Sbjct: 461 PLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSF 520

Query: 369 S---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK------ 419
           S   K  EAL  F QM  +G+  +++T  + LSACA L ++  G+ +  V ++       
Sbjct: 521 SQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADI 580

Query: 420 YGISPRVEHYACMVNL------------------------YGRAGLIDEAYSMI--VEKM 453
           +  S  ++ YA   NL                        YG  GL+ E+ S++  +++ 
Sbjct: 581 FAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEE 640

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQ---KLFELEPDNEHNFELLIKIYGNAGRLD 510
            ++   V + AL+ AC   G V  G    Q   K + + P  EH F  ++ +Y  +G+LD
Sbjct: 641 GYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEH-FACMVDLYSRSGKLD 699



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 12/336 (3%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNK--GISSKLLRLYATFGLIDEAHQVFDQM 152
           ++L  C     +  G+++H R + +  L  +    + ++LL +Y       +A  VF  +
Sbjct: 37  AVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 153 SNRTAFA-FPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGL 209
               A +  PWN LI G+   G++  A+  Y +M        PD  T P V+K+CA LG 
Sbjct: 97  PRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           + +G  VH  A   G   D +V +ALV MYA  G +  AR  FD I  +D + +N M+ G
Sbjct: 157 MSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDG 216

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWD 326
            I  G +  A  +FR M  +G +P+   ++   S+ A  + L  GAQ+H   ++ G+E +
Sbjct: 217 CIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPE 276

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMER 383
           + +AN+L+ +Y+K   LD A  LF+ MPQ D+V+WN +I    ++    EA   F  M+R
Sbjct: 277 VAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQR 336

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
            G  PD +T VSLL A   L  +K G+ +   +V  
Sbjct: 337 SGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRN 372



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 212/437 (48%), Gaps = 16/437 (3%)

Query: 40  RNRITTFSSYPKSSPTPLLTNQ---KAFPKTKLQALDSIIQDLESSVQNGITVQTETFAS 96
           R+ +  FS+ P+++    L      + F       L  +      S     +    T   
Sbjct: 87  RDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPY 146

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           ++++C  L A+  G  +HR      L  +  + S L+++YA  GL+  A   FD +  R 
Sbjct: 147 VVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERD 206

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                WN ++ G  + G+ + A+ L+  M   G EP+  T    L  CA    +  G ++
Sbjct: 207 CVL--WNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQL 264

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  AV+ G   +  V N L+ MYAKC  +  A  +F+ +   DL+++N M++G + +GL 
Sbjct: 265 HSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLF 324

Query: 277 VEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
           VEAF +F  M  +G  PD + + S+   L + + L+ G +VHG+++R  V  D+ + ++L
Sbjct: 325 VEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSAL 384

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDH 390
           + +Y K   +  A  L+D     DVV  +++I  +       EAL  F  +    + P+ 
Sbjct: 385 VDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNA 444

Query: 391 LTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           +T  S+L  CA + ++ +G+++   V+   Y     VE  + ++++Y + G +D ++ + 
Sbjct: 445 VTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIF 502

Query: 450 VEKMEFEASPVVWGALL 466
           + KM  +   V W +++
Sbjct: 503 L-KMS-QKDEVTWNSMI 517


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 167/466 (35%), Positives = 262/466 (56%), Gaps = 20/466 (4%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QALD     L+     GI + + T AS+L  C QL  +     +H  +  + L     +S
Sbjct: 256 QALDV----LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVS 311

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +YA FG + +A +VF QM  R   +  WNS+I+ Y +  +   A   +F+M+  G
Sbjct: 312 NALINMYAKFGNLGDAQKVFQQMFLRDVVS--WNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKA 248
           +EPD  T   +    A     +    VH   +R G+  +  V+ NA++DMYAK G I  A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM------ILNGFDPDPVAISSIL 302
             VF+ I  KD++S+N++++GY  +GL  EA +++R M       LN      V+I +  
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLN--QGTWVSILAAY 487

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A+   L+ G ++HG +++  +  D+ +   LI +Y K G+L  A  LF  +P++  V WN
Sbjct: 488 AHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWN 547

Query: 363 SIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +II  H       +AL  F +M+ +GV PDH+TF+SLLSAC+H G V  G+  F +M E 
Sbjct: 548 AIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE- 606

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           YGI P ++HY CMV+L GRAG ++ AY  I + M       +WGALL AC +HGN+ +G+
Sbjct: 607 YGIKPSLKHYGCMVDLLGRAGFLEMAYDFI-KDMPLHPDASIWGALLGACRIHGNIELGK 665

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            A+ +LFE++ +N   + LL  IY N G+ + V++V  +  +RGL+
Sbjct: 666 FASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 711



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 242/448 (54%), Gaps = 29/448 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C   + +  G K+H  +     + +  +++ L+ +Y+ FG +  A  +FD M
Sbjct: 177 TFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM 233

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++ISG  + G    A+ +  +M  EG+  D  T   +L  CA LG I  
Sbjct: 234 PFRDMGS--WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIST 291

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
              +HL  ++ G  F+ FV NAL++MYAK G++  A+ VF ++  +D++S+NS++  Y  
Sbjct: 292 ATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQ 351

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEW---D 326
           +   V A   F  M LNG +PD    V+++SI A +   +    VHG+++RRG  W    
Sbjct: 352 NDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRG--WLMEA 409

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
           + I N+++ +Y+K G +D A  +F+ +P KDVVSWN++I  ++++    EA+  +  ME 
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 384 -DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              +  +  T+VS+L+A AH+G+++ G R+   ++ K  +   V    C+++LYG+ G +
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLI-KTNLHLDVFVGTCLIDLYGKCGRL 528

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE-----PDNEHNFE 497
            +A  +  +      S V W A++    +HG+   GE A +   E++     PD+   F 
Sbjct: 529 VDAMCLFYQVP--RESSVPWNAIISCHGIHGH---GEKALKLFREMQDEGVKPDHV-TFI 582

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L+    ++G +D+ +    ++ + G++
Sbjct: 583 SLLSACSHSGLVDEGKWFFHLMQEYGIK 610



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 201/362 (55%), Gaps = 15/362 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F SL ++C +    +   +LH L+  +   ++  IS +L+ LYA+ G +  +   FDQ+ 
Sbjct: 79  FNSLFDSCTKTLLAK---RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQ 135

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +  +   WNS+IS Y   G + +AI  ++Q +     + D +TFP VLKAC  L     
Sbjct: 136 RKDVYT--WNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL---VD 190

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G K+H    + GF +D FV  +L+ MY++ G +  AR++FD +  +D+ S+N+M++G I 
Sbjct: 191 GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQ 250

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   +A D+   M L G + D V ++SIL   A    +     +H +V++ G+E++L +
Sbjct: 251 NGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFV 310

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERDGV 386
           +N+LI +Y+K G L  A  +F  M  +DVVSWNSII A+ ++ + +    +F +M+ +G+
Sbjct: 311 SNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGL 370

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD LT VSL S  A     K    +   ++ +  +   V     ++++Y + G+ID A+
Sbjct: 371 EPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAH 430

Query: 447 SM 448
            +
Sbjct: 431 KV 432



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 160/326 (49%), Gaps = 17/326 (5%)

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G +   I  +++   +  E D   F  +  +C    L    +++H   V  G     F+ 
Sbjct: 58  GWFNGQIPFHWRQPAKNEEID---FNSLFDSCTKTLL---AKRLHALLVVSGKIQSNFIS 111

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL-NGF 291
             LV++YA  GD+  +R  FD+I  KD+ ++NSM++ Y+ +G   EA D F  ++L   F
Sbjct: 112 IRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKF 171

Query: 292 DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
             D      +L     L  G ++H WV + G +WD+ +A SLI +YS+ G +  A  LFD
Sbjct: 172 QADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFD 231

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            MP +D+ SWN++I     +    +AL   ++M  +G+  D +T  S+L  CA LG +  
Sbjct: 232 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIST 291

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
              L  + V K+G+   +     ++N+Y + G + +A   + ++M F    V W +++ A
Sbjct: 292 AT-LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDA-QKVFQQM-FLRDVVSWNSII-A 347

Query: 469 CYLHGN---VCMGETAAQKLFELEPD 491
            Y   +      G     +L  LEPD
Sbjct: 348 AYEQNDDPVTARGFFFKMQLNGLEPD 373



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 13/239 (5%)

Query: 294 DPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
           + +  +S+  + +   +  ++H  ++  G      I+  L+ +Y+  G +  +   FD +
Sbjct: 75  EEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQI 134

Query: 354 PQKDVVSWNSIIHAHSKD---HEAL-IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
            +KDV +WNS+I A+ ++    EA+  +++ +       D  TF  +L AC  L    V 
Sbjct: 135 QRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL----VD 190

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            R     V K G    V   A ++++Y R G +  A S+  + M F      W A++   
Sbjct: 191 GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLF-DDMPFRDMG-SWNAMISGL 248

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFEL--LIKIYGNAGRLDDVERVERMLVDRGLEF 526
             +GN         ++  LE  N  +  +  ++ +    G +     +   ++  GLEF
Sbjct: 249 IQNGNAAQALDVLDEM-RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEF 306


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 256/436 (58%), Gaps = 11/436 (2%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           +LL +  +L+ ++   ++H  I  + L +++ + +KL+ L  T G I  A ++F  + N 
Sbjct: 32  ALLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNP 88

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            +F F  +SL+   ++ G   D +  Y +M   G     +TF  V+KACA L  +R+G++
Sbjct: 89  DSFLF--DSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKE 146

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   +  G+G D +V  AL+ +YAK  D+  A+ VFD +  + +I++NS+++GY  +GL
Sbjct: 147 IHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL 206

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANS 332
             E+  +F  M+ +GF PD   I S+L++ S    L  G  +H +    G + ++ +  S
Sbjct: 207 PQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS 266

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           LI +Y++ G + +A  +FD M +++VV+W ++I     H    +A+  F +M   G  P+
Sbjct: 267 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 326

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           ++TFV++LSACAH G +  G R+FS M E YG+ P VEH  CMV+++GRAGL+++AY  I
Sbjct: 327 NITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFI 386

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509
            + +  E  P VW ++L AC +H N  +G   A+ +  +EP+N  ++ +L  IY  AGR+
Sbjct: 387 KKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRM 446

Query: 510 DDVERVERMLVDRGLE 525
           D VE V  M+  R L+
Sbjct: 447 DRVEMVRNMMTRRRLK 462



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 174/373 (46%), Gaps = 56/373 (15%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      TF S+++ C  L A+  G ++H  +       +  + + L+ LYA    +  
Sbjct: 119 SGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKV 178

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD M  RT  A  WNSLISGY + G  +++I L+  M E G +PD  T   +L +C
Sbjct: 179 AKKVFDAMPQRTIIA--WNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSC 236

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +  G  +H  A   GF  +  +  +L++MY +CG++ KAR VFD +  ++++++ 
Sbjct: 237 SQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWT 296

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQV-----HG 316
           +M++GY  HG   +A ++F  M   G  P+    VA+ S  A++ L+  G +V       
Sbjct: 297 AMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEA 356

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI 376
           + L  GVE ++C+ +    ++ + G L+ A         K+                   
Sbjct: 357 YGLVPGVEHNVCMVD----MFGRAGLLNDAYQFIKKFIPKE------------------- 393

Query: 377 YFEQMERDGVLPDHLTFVSLLSACA-----HLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
                      P    + S+L AC       LG VKV E + SV  E  G      HY  
Sbjct: 394 -----------PGPAVWTSMLGACRMHRNFDLG-VKVAEHVLSVEPENPG------HYVM 435

Query: 432 MVNLYGRAGLIDE 444
           + N+Y  AG +D 
Sbjct: 436 LSNIYALAGRMDR 448



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 18/196 (9%)

Query: 63  AFPKTKLQALDSIIQDLESS-------------VQNGITVQTETFASLLETCYQLKAVEH 109
           A P+  + A +S+I   + +             +++G    + T  SLL +C QL A++ 
Sbjct: 185 AMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDF 244

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G  LH     N    N  + + L+ +Y   G + +A +VFD M  R      W ++ISGY
Sbjct: 245 GCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVT--WTAMISGY 302

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-D 228
              G    A+ L+ +M   G  P+  TF  VL ACA  GLI  G +V   +++  +G   
Sbjct: 303 GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV-FSSMKEAYGLVP 361

Query: 229 GFVLN-ALVDMYAKCG 243
           G   N  +VDM+ + G
Sbjct: 362 GVEHNVCMVDMFGRAG 377


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 254/439 (57%), Gaps = 10/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF S+L+TC     +  G  +H  +  + +  +  + + L+ +YA  G  + A +VF ++
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W +LI+G+   G Y   + ++ QM  EG  P+ +TF  +L++C+ L  + +
Sbjct: 253 PERDVVS--WTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   V+     + FV  ALVDMYAK   +  A T+F+R+  +DL ++  ++ GY  
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
            G   +A   F  M   G  P+   ++S L+  S    L  G Q+H   ++ G   D+ +
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 429

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGV 386
           A++L+ +Y+K G ++ A  +FD +  +D VSWN+II     H +  +AL  FE M  +G 
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PD +TF+ +LSAC+H+G ++ G++ F+ + + YGI+P +EHYACMV++ GRAG   E  
Sbjct: 490 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 549

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           S I E+M+  ++ ++W  +L AC +HGN+  GE AA KLFELEP+ + N+ LL  ++   
Sbjct: 550 SFI-EEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAK 608

Query: 507 GRLDDVERVERMLVDRGLE 525
           G  DDV  V  ++  RG++
Sbjct: 609 GMWDDVTNVRALMSTRGVK 627



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 225/468 (48%), Gaps = 48/468 (10%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           FASL+     L    +G  +H  +       +  IS+  + +Y     ++   Q F  M 
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                +   N+L+SG+ +    +    +  Q+  EG EP+ +TF  +LK CA  G +  G
Sbjct: 153 IENLASR--NNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEG 210

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           + +H   ++ G   D  + N+LV++YAKCG    A  VF  I  +D++S+ +++TG++  
Sbjct: 211 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 270

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIA 330
           G       IF  M+  GF+P+     SIL + S L    +G QVH  +++  ++ +  + 
Sbjct: 271 G-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG 329

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
            +L+ +Y+K+  L+ A  +F+ + ++D+ +W  I+  +++D    +A+  F QM+R+GV 
Sbjct: 330 TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVK 389

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA-- 445
           P+  T  S LS C+ + ++  G +L S+ + K G S  +   + +V++Y + G +++A  
Sbjct: 390 PNEFTLASSLSGCSRIATLDSGRQLHSMAI-KAGQSGDMFVASALVDMYAKCGCVEDAEV 448

Query: 446 -YSMIVEKMEFEASPVVWG------------------------------ALLYACYLHGN 474
            +  +V +     + ++ G                               +L AC   G 
Sbjct: 449 VFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGL 508

Query: 475 VCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
           +  G+    +  K++ + P  EH +  ++ I G AG+  +VE  +E M
Sbjct: 509 IEEGKKHFNSLSKIYGITPTIEH-YACMVDILGRAGKFHEVESFIEEM 555



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 181/360 (50%), Gaps = 33/360 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G      TF S+L +C  L  V+ G ++H  I  N L  N  + + L+ +YA    +++A
Sbjct: 286 GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDA 345

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F+++  R  FA  W  +++GYA+ G+ E A+  + QM+ EGV+P++FT    L  C+
Sbjct: 346 ETIFNRLIKRDLFA--WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 403

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +  +  G ++H  A++ G   D FV +ALVDMYAKCG +  A  VFD + ++D +S+N+
Sbjct: 404 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 463

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           ++ GY  HG   +A   F  M+  G  PD V    +L+  S        H  ++  G + 
Sbjct: 464 IICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS--------HMGLIEEGKKH 515

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG 385
                NSL  +Y     ++    + D            I+    K HE   + E+M+   
Sbjct: 516 ----FNSLSKIYGITPTIEHYACMVD------------ILGRAGKFHEVESFIEEMK--- 556

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDE 444
           +  + L + ++L AC   G+++ GER     ++ + + P ++ +Y  + N++   G+ D+
Sbjct: 557 LTSNVLIWETVLGACKMHGNIEFGER---AAMKLFELEPEIDSNYILLSNMFAAKGMWDD 613



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 170/342 (49%), Gaps = 11/342 (3%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           S L+ +Y     +  A QV ++M  +      WN  +S        ++A+ L++ M    
Sbjct: 28  SSLVNVYVKCESLQCARQVLEEMPIQDVQ--QWNQKLSSANSPYPLQEAVQLFYLMRHTR 85

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           +  +QF F  ++ A A LG    GE +H    ++GF  D  + NA V MY K   +    
Sbjct: 86  IRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGW 145

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
             F  +  ++L S N++L+G+       +   I   +++ GF+P+     SIL   A+  
Sbjct: 146 QFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKG 205

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G  +HG V++ G+  D  + NSL+ VY+K G  + AC +F  +P++DVVSW ++I 
Sbjct: 206 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALIT 265

Query: 367 AHSKD--HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
               +     L  F QM  +G  P+  TF+S+L +C+ L  V +G+++ + +V K  +  
Sbjct: 266 GFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIV-KNSLDG 324

Query: 425 RVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWG 463
                  +V++Y +   +++A   ++ ++++  F  + +V G
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 366



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EA 374
           V++ G+  D  + +SL+ VY K   L  A  + + MP +DV  WN  + + +  +   EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  F  M    +  +   F SL+SA A LG    GE + +  V KYG    +      V 
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHAC-VCKYGFESDILISNAFVT 133

Query: 435 LYGRAGLIDEAY----SMIVEKM 453
           +Y +   ++  +    +M++E +
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENL 156


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 269/478 (56%), Gaps = 15/478 (3%)

Query: 55  TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH 114
           T L+T+   F    LQAL S+   +  S   G      TF+S+L        V HG +LH
Sbjct: 214 TSLITHLSHF-NMHLQAL-SLFNQMRCS---GPYPNQFTFSSILSASAATMMVLHGQQLH 268

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
            LI  +    N  + + L+ +YA    +  A +VFDQM  R   +  WNS+I G+     
Sbjct: 269 SLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVS--WNSMIVGFFHNNL 326

Query: 175 YEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           Y+ A+ ++   + E+ V P++ +   VL ACA +G +  G +VH   V++G     +V+N
Sbjct: 327 YDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMN 386

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           +L+DMY KC    +   +F  +G++D++++N ++ G++ +    EA + F  M   G  P
Sbjct: 387 SLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILP 446

Query: 294 DPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D  + S++L ++ASL  L  G  +H  +++ G   ++CI  SLI +Y+K G L  A  +F
Sbjct: 447 DEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVF 506

Query: 351 DHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           + +   +V+SW ++I A   H   ++ +  FE M  +G+ P H+TFV +LSAC+H G V+
Sbjct: 507 EGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVE 566

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G   F+ M + + ++P  EHYACMV+L GRAG +DEA   I E M  + +P VWGALL 
Sbjct: 567 EGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFI-ESMPMKPTPSVWGALLG 625

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AC  +GN+ MG  AA++LFE+EP N  N+ LL  +   +GRL++   V R++   G+ 
Sbjct: 626 ACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVR 683



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 232/468 (49%), Gaps = 50/468 (10%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL T  Q ++++H  ++H  I  N       + + L+ LYA  G +++A  +F    +  
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                W SLI+  +    +  A++L+ QM   G  P+QFTF  +L A A   ++  G+++
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H    + GF  + FV  ALVDMYAKC D+  A  VFD++  ++L+S+NSM+ G+ H+ L 
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 277 VEAFDIFRGMIL-NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
             A  +F+ ++      P+ V++SS+L   AN   L  G QVHG V++ G+     + NS
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNS 387

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           L+ +Y K    D+   LF  +  +DVV+WN ++     + K  EA  YF  M R+G+LPD
Sbjct: 388 LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPD 447

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
             +F ++L + A L ++  G  +   ++ K G    +     ++ +Y + G + +AY  +
Sbjct: 448 EASFSTVLHSSASLAALHQGTAIHDQII-KLGYVKNMCILGSLITMYAKCGSLVDAYQ-V 505

Query: 450 VEKMEFEASPVVWGALLYACYLHGN-----------------------VCMGETAA---- 482
            E +E + + + W A++ A  LHG                        VC+    +    
Sbjct: 506 FEGIE-DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGR 564

Query: 483 -----------QKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
                      +K+ ++ P  EH +  ++ + G AG LD+ +R +E M
Sbjct: 565 VEEGLAHFNSMKKIHDMNPGPEH-YACMVDLLGRAGWLDEAKRFIESM 611


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 256/429 (59%), Gaps = 9/429 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +L+ C + K +  G   H  I    L+ +   S+ L+ +Y+  G +D A QVFD+M +R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN++I    + GE  +A+ L  QM+ EG    +FT   VL ACA    +   + +
Sbjct: 130 LVS--WNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLL 187

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  A++     + FV  AL+D+YAKCG +  A  VF+ + ++ +++++SM  GY+ + + 
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSL 333
            +A  +FR     G   D   +SS++   + L     G QV+  + + G   ++ +A+SL
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSL 307

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           I +Y+K G ++++  +F  + +++VV WN++I     H++  E +I FE+M++ G+ P+ 
Sbjct: 308 IDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPND 367

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFVS+LSAC H+G VK G++ F +M +++ ++P V HY+CMV+   RAG I EAY +I 
Sbjct: 368 VTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLI- 426

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
            K+ F AS  +WG+LL +C  HGN+ + E AA+KLF++EP N  N+ LL  +Y   G+ D
Sbjct: 427 SKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWD 486

Query: 511 DVERVERML 519
           +V ++ ++L
Sbjct: 487 EVAKMRKLL 495



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +ALD ++Q      + G      T +S+L  C    A+     LH       +  N  ++
Sbjct: 148 EALDLLLQ----MQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVA 203

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + LL +YA  GL+ +A  VF+ M +R+     W+S+ +GY +   YE A+AL+ +  E G
Sbjct: 204 TALLDVYAKCGLMKDAVCVFESMPDRSVVT--WSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           ++ DQF    V+ ACAGL  +  G++V+    + GF  + FV ++L+DMYAKCG I ++ 
Sbjct: 262 LKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESY 321

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            VF  +  ++++ +N+M++G   H   +E   +F  M   G  P+ V   S+L+
Sbjct: 322 KVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 255/481 (53%), Gaps = 79/481 (16%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T++++L  C  + A++ G +LH  +          + + LL LY+  G+++EA  VF+ +
Sbjct: 216 TYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENL 275

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDA---------------------------------- 178
             R   +  W + I+G+ + G+++ A                                  
Sbjct: 276 GQRNIIS--WTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCDLGKWM 333

Query: 179 ----------------IALYFQMEEEG-----VEPDQFTFPRVLKACAGLGLIRVGEKVH 217
                           I L  +M EEG     + P+QF  P +LKAC  L   R GE +H
Sbjct: 334 KQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRRTGENMH 393

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
              ++  F  D ++++AL+ MY+KCG + KA  VFD I N  ++S+N+++ G        
Sbjct: 394 TVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIPN--VVSWNTLIAG-------- 443

Query: 278 EAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334
                F  M+  GF P  V ISS+L    N + LR G ++HG+ +  GVE D+ + ++L+
Sbjct: 444 -----FSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALV 498

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL 391
            +Y+K G + +A  LF  MP+++ V+WNS+I     H   +EA+  F QME      DHL
Sbjct: 499 DMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHL 558

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           TF ++L+AC+H G V++GE LF  M EKY I PR+EHYACMV+L GRAG + EAY +I +
Sbjct: 559 TFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLI-K 617

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            M  E    VWGALL AC  HGN+ + E AA+ LFELEP++  +  LL  +Y +AGR  +
Sbjct: 618 AMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGN 677

Query: 512 V 512
            
Sbjct: 678 A 678



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 119/219 (54%), Gaps = 7/219 (3%)

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G    Q+ F   L  C   G + +G + H   V+ G G D FV  +L+DMYAKCG++  A
Sbjct: 109 GFPHRQYVF-SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NA 305
             V+D++ + D  + N +++ Y  +G  V+AF +F  +   G  P+    S++LA     
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           S ++ G Q+H  V++     +  + N+L+ +YSK G +++A  +F+++ Q++++SW + I
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASI 287

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           +    H    +AL  F  M   G+ P+  TF  +L++C 
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCG 326



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 47/352 (13%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S L  C +   VE G + H  +    L  ++ + + L+ +YA  G +D A +V+D+M++ 
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            A     N LIS YA  G +  A  ++ Q+   G  P+ +T+  +L  C  +  I+ G++
Sbjct: 178 DAATC--NCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQ 235

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   V+  +  +  V NAL+ +Y+KCG + +A  VF+ +G +++IS+ + + G+  HG 
Sbjct: 236 LHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGD 295

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR--GVEWDLCIANSL 333
             +A   F  M  +G +P+    S +LA+      G  +  W+ +R     W        
Sbjct: 296 FKKALKQFSMMRESGIEPNEFTFSIVLASC-----GCDLGKWMKQRTSSNRW-------- 342

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTF 393
                  G+   + +L   M +                       E  +   + P+    
Sbjct: 343 ------GGQHLMSIFLLRKMIE-----------------------EGNKPTSLRPNQFVL 373

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            S+L AC HL   + GE + +V++ K          + ++ +Y + G +++A
Sbjct: 374 PSILKACGHLSDRRTGENMHTVIL-KNSFESDAYIISALIYMYSKCGHVEKA 424



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
           + +++I      +  G    + T +SLL  C  +  + HG ++H       + K+  + S
Sbjct: 436 SWNTLIAGFSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRS 495

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            L+ +YA  G I EA  +F  M  R      WNSLI GYA  G   +AI L+ QMEE   
Sbjct: 496 ALVDMYAKCGYISEAKILFYMMPERNTVT--WNSLIFGYANHGYCNEAIELFNQMEESDT 553

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKV 216
           + D  TF  VL AC+  G++ +GE +
Sbjct: 554 KLDHLTFTAVLNACSHAGMVELGESL 579


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 166/463 (35%), Positives = 250/463 (53%), Gaps = 21/463 (4%)

Query: 77  QDLESSVQNG-----------ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
            D ESSV  G           +     T   LL  C +L  VE G +LH  I       N
Sbjct: 70  SDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVN 129

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             ++S L+ LY   GL+ EA + FD++  R      WN ++S YA     E+A   +  M
Sbjct: 130 SFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVL--WNVMLSCYAMNCLAEEASGFFKLM 187

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           +EE    D FTF  +L +C  LG   +G ++H  +++  F  D  V + LVDMYAK  +I
Sbjct: 188 QEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENI 247

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             AR  FD +  ++++S+N+M+ GY   G   EA  +  GM      PD + ++SI+ + 
Sbjct: 248 DDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSC 307

Query: 306 SLLRIGA---QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           S         QV+ +VL+ G    L IAN+LI  YSK G +  A   F+ + + D+V+W 
Sbjct: 308 SSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEPDLVTWT 367

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           S+I A   HS    ++  FE+M  DGV PD + F+ +LSAC+H G V  G   FS+M + 
Sbjct: 368 SLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYFSLM-KD 426

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           Y I P +EHY C+++L GRAGL+DEA++ I+  M    S    GA + AC +HG+V + +
Sbjct: 427 YHILPGLEHYTCLIDLLGRAGLLDEAFN-ILNSMSIGYSSDTLGAFIGACKIHGDVKLAK 485

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            AA+KLFE+EP+   N+ L+  ++ + G   DV R+ +++ DR
Sbjct: 486 WAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVARIHKLMRDR 528



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 181/358 (50%), Gaps = 19/358 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL--GEYEDAIALYF-- 183
           + +++L +Y      + AH++FD+M  R      WN++I G  +    +YE ++ + F  
Sbjct: 25  LQNQILNVYIKCKDFNYAHRLFDEMHVRNVV--TWNTVICGLVDCRGSDYESSVYMGFCY 82

Query: 184 --QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
             +M  + V  D  T   +L+AC  L  + +G ++H   V+ GF  + FV +ALVD+Y K
Sbjct: 83  FRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGK 142

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG + +AR  FD +  +DL+ +N ML+ Y  + L  EA   F+ M    F  D    SS+
Sbjct: 143 CGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSM 202

Query: 302 LANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L +   L    +G Q+HG  ++   + D+ +A+ L+ +Y+K   +D A   FD M  ++V
Sbjct: 203 LNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNV 262

Query: 359 VSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAH-LGSVKVGERLFS 414
           VSWN+++  + +     EA+     M ++ + PD +T  S++ +C+  L S ++ +   +
Sbjct: 263 VSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQ--VN 320

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
             V K G    +     ++N Y + G I  A ++       E   V W +L+ A   H
Sbjct: 321 AYVLKNGFHAFLSIANALINAYSKGGSI--AMALQCFNTVLEPDLVTWTSLIGAYAFH 376



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 136/252 (53%), Gaps = 15/252 (5%)

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           +G +R G++VH   ++ GF     + N ++++Y KC D   A  +FD +  ++++++N++
Sbjct: 1   MGFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTV 60

Query: 267 LTGYI------HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL----LRIGAQVHG 316
           + G +      +   +   F  FR M+L+    D + ++ +L  A L    + IG ++H 
Sbjct: 61  ICGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLL-RACLELNDVEIGRELHC 119

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
           ++++ G   +  + ++L+ +Y K G + +A   FD +  +D+V WN ++  ++ +    E
Sbjct: 120 FIVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEE 179

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A  +F+ M+ +  + D  TF S+L++C  LGS  +G ++  + + K      V   + +V
Sbjct: 180 ASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSI-KLSFDLDVLVASGLV 238

Query: 434 NLYGRAGLIDEA 445
           ++Y ++  ID+A
Sbjct: 239 DMYAKSENIDDA 250



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 15/195 (7%)

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII- 365
            LR G QVH  V++ G    L + N ++ VY K    + A  LFD M  ++VV+WN++I 
Sbjct: 3   FLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVIC 62

Query: 366 ---HAHSKDHEALI-----YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
                   D+E+ +     YF +M  D V  D +T   LL AC  L  V++G  L   +V
Sbjct: 63  GLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIV 122

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
            K G +      + +V+LYG+ GL+ EA     E   +    V+W  +L +CY     C+
Sbjct: 123 -KLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEV--YCRDLVLWNVML-SCYAMN--CL 176

Query: 478 GETAAQKLFELEPDN 492
            E A+     ++ +N
Sbjct: 177 AEEASGFFKLMQEEN 191


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 261/439 (59%), Gaps = 11/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SLL    +L + + G ++H       +  +  +++ L+ +YA FG +++A  +F+QM
Sbjct: 144 TLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQM 203

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R   +  WN++I+   + G   +A  L   M++ G  P+  T   VL ACA +  +++
Sbjct: 204 KDRNVVS--WNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKM 261

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  ++R G  FD F+ NAL+DMY+KCG +  AR +F+R   KD +SYN+++ GY  
Sbjct: 262 GKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQ 320

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCI 329
                E+  +F+ M   G D D V+    L+   N S+ + G ++H  ++RR +     +
Sbjct: 321 SPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFL 380

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
           +NSL+ +Y+K G L  A  +F+ + +KDV SWN++I     H +   A   FE M+ DG+
Sbjct: 381 SNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGL 440

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             DH++++++L+AC+H G V  G++ FS MV +  I P+  HYACMV+L GRAG + +  
Sbjct: 441 DYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQLSKC- 498

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           + I+  M F A+  VWGALL AC +HGN+ + + AA+ LFEL+P++   + L+I +Y   
Sbjct: 499 AEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAET 558

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++  ++ +++  R ++
Sbjct: 559 GRWNEANKIRKLMKSRKVQ 577



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 226/416 (54%), Gaps = 16/416 (3%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S +++G  +   +  S++  C   +  + G+ +H L     L     +++ L+ +Y  
Sbjct: 29  LVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGK 88

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
           FG ++ + QVFD M  +   +  WNS I  +   G Y D + ++ +M E  V P   T  
Sbjct: 89  FGDVEASMQVFDGMLEQNEVS--WNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLS 146

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +L A   LG   +G +VH  +++     D FV N+LVDMYAK G + KA T+F+++ ++
Sbjct: 147 SLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDR 206

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           +++S+N+M+   + +G   EAF +   M  +G  P+ + + ++L   A  + L++G Q+H
Sbjct: 207 NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIH 266

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
            W +RRG+ +DL I+N+LI +YSK G+L  A  +F+   +KD VS+N++I  +S+     
Sbjct: 267 AWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCF 325

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           E+L+ F+QM   G+  D ++F+  LSAC +L   K G+ +  V+V +  +S        +
Sbjct: 326 ESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL-LSGHPFLSNSL 384

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           ++LY + G++  A S I  K+  +     W  ++    +HG +      A +LFEL
Sbjct: 385 LDLYTKGGMLVTA-SKIFNKIT-KKDVASWNTMILGYGMHGQI----DIAFELFEL 434



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 160/299 (53%), Gaps = 8/299 (2%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WNSL+S +   G + DA      M   G   +  +   V+ AC      + G  +H  AV
Sbjct: 9   WNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAV 68

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G      + NALVDMY K GD+  +  VFD +  ++ +S+NS +  +++ G   +   
Sbjct: 69  KVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLR 128

Query: 282 IFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +FR M  +   P  + +SS+   L       +G +VHG+ ++R ++ D+ +ANSL+ +Y+
Sbjct: 129 MFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYA 188

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G L++A  +F+ M  ++VVSWN++I     +  + EA      M++ G  P+ +T V+
Sbjct: 189 KFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVN 248

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           +L ACA + S+K+G+++ +  + + G+   +     ++++Y + G +  A + I E+ E
Sbjct: 249 VLPACARMASLKMGKQIHAWSIRR-GLMFDLFISNALIDMYSKCGQLSLARN-IFERSE 305



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 113/215 (52%), Gaps = 9/215 (4%)

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQV 314
           +D++S+NS+++ ++ +G+  +A      M+ +GF  +  ++ S++         + G  +
Sbjct: 4   RDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI 63

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--- 371
           H   ++ G+   + +AN+L+ +Y K G ++ +  +FD M +++ VSWNS I         
Sbjct: 64  HALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFY 123

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            + L  F +M    V+P  +T  SLL A   LGS  +G  +    +++  +   +     
Sbjct: 124 GDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKR-AMDLDIFVANS 182

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +V++Y + G +++A S I E+M+ + + V W A++
Sbjct: 183 LVDMYAKFGSLEKA-STIFEQMK-DRNVVSWNAMI 215



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MP++DVVSWNS++ A   +   H+A      M R G   +  + VS++ AC      K G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
             + ++ V K G++  V     +V++YG+ G  D   SM V     E + V W + +  C
Sbjct: 61  LSIHALAV-KVGLNTMVNLANALVDMYGKFG--DVEASMQVFDGMLEQNEVSWNSAI-GC 116

Query: 470 YLHG 473
           +L+ 
Sbjct: 117 FLNA 120


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/482 (32%), Positives = 265/482 (54%), Gaps = 14/482 (2%)

Query: 44  TTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
            T  + P+ S   ++    A     L+ALD I Q L+   +N +     + +  L  C  
Sbjct: 298 NTLPNPPRQSYNAIIVGY-ARQDQGLKALD-IFQSLQ---RNNLGFDEISLSGALTACSV 352

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           +K    GI+LH L     L  N  +++ +L +Y   G + EA  +F++M  R A +  WN
Sbjct: 353 IKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVS--WN 410

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I+ + +  E    ++L+  M    +EPD FT+  V+KACAG   +  G ++H   ++ 
Sbjct: 411 AIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKS 470

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G G D FV +ALVDMY KCG +++A  +  R+  K  +S+NS+++G+        A   F
Sbjct: 471 GMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYF 530

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M+  G  PD    +++L   AN + + +G Q+H  +L+  +  D+ IA++L+ +YSK 
Sbjct: 531 SQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKC 590

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G +  +  +F+  P++D V+W+++I A   H    +A+  FE+M+   V P+H  F+S+L
Sbjct: 591 GNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVL 650

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            ACAH+G V  G   F  M+  YG+ P++EHY+CMV+L GR+G ++EA  +I E M FEA
Sbjct: 651 RACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLI-ESMPFEA 709

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
             V+W  LL  C + GNV + E A   L +L+P +   + LL  +Y   G   +V ++  
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRS 769

Query: 518 ML 519
           ++
Sbjct: 770 IM 771



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 209/380 (55%), Gaps = 11/380 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA +L+ C  ++    G+++H L        +    S L+ +Y+    +D+A +VF +M
Sbjct: 140 TFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREM 199

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      W+++I+GY +   + + + L+  M + G+   Q T+  V ++CAGL   ++
Sbjct: 200 PERNLVC--WSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKL 257

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++  F +D  +  A +DMYAKC  +  A  VF+ + N    SYN+++ GY  
Sbjct: 258 GTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYAR 317

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
               ++A DIF+ +  N    D +++S  L   S+++    G Q+HG  ++ G+ +++C+
Sbjct: 318 QDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICV 377

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
           AN+++ +Y K G L +AC +F+ M ++D VSWN+II AH ++ E    L  F  M R  +
Sbjct: 378 ANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTM 437

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  T+ S++ ACA   ++  G  +   ++ K G+       + +V++YG+ G++ EA 
Sbjct: 438 EPDDFTYGSVVKACAGQQALNYGTEIHGRII-KSGMGLDWFVGSALVDMYGKCGMLMEA- 495

Query: 447 SMIVEKMEFEASPVVWGALL 466
             I  ++E E + V W +++
Sbjct: 496 EKIHARLE-EKTTVSWNSII 514



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 234/455 (51%), Gaps = 27/455 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   T+AS+  +C  L A + G +LH     +    +  I +  L +YA    + +A
Sbjct: 234 GMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDA 293

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+ + N    ++  N++I GYA   +   A+ ++  ++   +  D+ +    L AC+
Sbjct: 294 WKVFNTLPNPPRQSY--NAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS 351

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +     G ++H  AV+ G GF+  V N ++DMY KCG +++A  +F+ +  +D +S+N+
Sbjct: 352 VIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNA 411

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++  +  +  +V+   +F  M+ +  +PD     S++   A    L  G ++HG +++ G
Sbjct: 412 IIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSG 471

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  + ++L+ +Y K G L +A  +   + +K  VSWNSII   S   +   A  YF 
Sbjct: 472 MGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFS 531

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM   G++PD+ T+ ++L  CA++ ++++G+++ + ++ K  +   V   + +V++Y + 
Sbjct: 532 QMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQIL-KLQLHSDVYIASTLVDMYSKC 590

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN-EH 494
           G + ++      ++ FE +P    V W A++ A   HG   +GE A     E++  N + 
Sbjct: 591 GNMQDS------RLMFEKAPKRDYVTWSAMICAYAYHG---LGEKAINLFEEMQLLNVKP 641

Query: 495 NFELLIKIYGNAGRLDDVER----VERMLVDRGLE 525
           N  + I +      +  V++     ++ML   GL+
Sbjct: 642 NHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLD 676



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 199/411 (48%), Gaps = 38/411 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+ +L+ C  LKA+  G ++H  +          +++ LL+ Y     ++ A +VFD+M
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
             R   ++                              WNSL+S Y   G    +I ++ 
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M    +  D  TF  +LKAC+G+    +G +VH  A++ GF  D    +ALVDMY+KC 
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            +  A  VF  +  ++L+ +++++ GY+ +   +E   +F+ M+  G        +S+  
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             A  S  ++G Q+HG  L+    +D  I  + + +Y+K  ++  A  +F+ +P     S
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQS 307

Query: 361 WNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           +N+II  +++  +   AL  F+ ++R+ +  D ++    L+AC+ +     G +L  + V
Sbjct: 308 YNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAV 367

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
            K G+   +     ++++YG+ G + EA  +I E+ME     V W A++ A
Sbjct: 368 -KCGLGFNICVANTILDMYGKCGALMEA-CLIFEEME-RRDAVSWNAIIAA 415



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 37/256 (14%)

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           + TF  +L+ C+ L  +  G++VH   +  GF    +V N L+  Y K   +  A  VFD
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 254 RIGNKDLI-------------------------------SYNSMLTGYIHHGLLVEAFDI 282
           R+  +D+I                               S+NS+L+ Y+H+G+  ++ +I
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 283 FRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M       D    + IL   S +    +G QVH   ++ G E D+   ++L+ +YSK
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSL 396
             KLD A  +F  MP++++V W+++I  + ++    E L  F+ M + G+     T+ S+
Sbjct: 186 CKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 397 LSACAHLGSVKVGERL 412
             +CA L + K+G +L
Sbjct: 246 FRSCAGLSAFKLGTQL 261


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 259/487 (53%), Gaps = 57/487 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  ++L  C  L A   G ++H     + L  +  + + ++ +YA  G ++EA++VF +M
Sbjct: 366 SLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRM 425

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--------------------- 191
             +   +  WN++++GY++ G  E A++L+ +M EE +E                     
Sbjct: 426 KFKDVVS--WNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCE 483

Query: 192 --------------PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-------- 229
                         P+  T   +L AC  +G +  G++ H  A++F    DG        
Sbjct: 484 ALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDL 543

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRGM- 286
            V+N L+DMYAKC     AR +FD +   ++D++++  M+ GY  HG    A  +F GM 
Sbjct: 544 KVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMF 603

Query: 287 -ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDG 341
            +     P+   +S  L   A  + LR G QVH +VLR       L +AN LI +YSK G
Sbjct: 604 KMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSG 663

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            +D A  +FD+MPQ++ VSW S++     H +  +AL  F++M +  ++PD +TF+ +L 
Sbjct: 664 DVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLY 723

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+H G V  G   F+ M + +G+ P  EHYACMV+L+GRAG + EA  +I E M  E +
Sbjct: 724 ACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINE-MPMEPT 782

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
           PVVW ALL AC LH NV +GE AA +L ELE  N+ ++ LL  IY NA R  DV R+   
Sbjct: 783 PVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYT 842

Query: 519 LVDRGLE 525
           +   G++
Sbjct: 843 MKRTGIK 849



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 231/503 (45%), Gaps = 71/503 (14%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G T    TF  + + C  L ++  G  LH  +  +    N  + + ++ +Y   G +  A
Sbjct: 254 GWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHA 313

Query: 146 HQVFDQMSNRTAFAF-PWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKA 203
           H +FD + +R       WNS++S Y    +   A+AL+ +M    +  PD  +   +L A
Sbjct: 314 HNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPA 373

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L     G +VH  ++R G   D FV NA+VDMYAKCG + +A  VF R+  KD++S+
Sbjct: 374 CASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSW 433

Query: 264 NSMLTGYIHHGLL-----------------------------------VEAFDIFRGMIL 288
           N+M+TGY   G L                                    EA D+FR M  
Sbjct: 434 NAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCD 493

Query: 289 NGFDPDPVAISSILANASLLRIGAQVHG---------WVLR-----RGVEWDLCIANSLI 334
            G  P+ V + S+L  ++ + +GA +HG         ++L       G + DL + N LI
Sbjct: 494 CGSRPNVVTLVSLL--SACVSVGALLHGKETHCYAIKFILNLDGPDPGAD-DLKVINGLI 550

Query: 335 VVYSKDGKLDQACWLFDHMPQK--DVVSWNSIIHA---HSKDHEALIYFEQMER--DGVL 387
            +Y+K    + A  +FD +  K  DVV+W  +I     H   + AL  F  M +    + 
Sbjct: 551 DMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIK 610

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+  T    L ACA L +++ G ++ + ++  +  S  +    C++++Y ++G +D A  
Sbjct: 611 PNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA-Q 669

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE--PDNEHNFELLIKIYG- 504
           ++ + M  + + V W +L+    +HG    GE A +   E+   P        L+ +Y  
Sbjct: 670 IVFDNMP-QRNAVSWTSLMTGYGMHGR---GEDALRVFDEMRKVPLVPDGITFLVVLYAC 725

Query: 505 -NAGRLD-DVERVERMLVDRGLE 525
            ++G +D  +    RM  D G++
Sbjct: 726 SHSGMVDHGINFFNRMSKDFGVD 748



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 159/318 (50%), Gaps = 61/318 (19%)

Query: 153 SNRTAFA--------------FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
           SN TA+A              F WN LI     LG   D   LY QM+  G  PD +TFP
Sbjct: 204 SNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFP 263

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--- 255
            V KACA L  + +G  +H    R GF  + FV NA+V MY KCG +  A  +FD +   
Sbjct: 264 FVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHR 323

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSIL-ANASL---LRI 310
           G +DL+S+NS+++ Y+       A  +F  M       PD +++ +IL A ASL   LR 
Sbjct: 324 GIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLR- 382

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G QVHG+ +R G+  D+ + N+++ +Y+K GK+++A  +F  M  KDVVSWN+++  +S+
Sbjct: 383 GRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQ 442

Query: 371 ----DH----------------------------------EALIYFEQMERDGVLPDHLT 392
               +H                                  EAL  F QM   G  P+ +T
Sbjct: 443 AGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVT 502

Query: 393 FVSLLSACAHLGSVKVGE 410
            VSLLSAC  +G++  G+
Sbjct: 503 LVSLLSACVSVGALLHGK 520



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 163/357 (45%), Gaps = 39/357 (10%)

Query: 194 QFTFPRVLKACAGLGLIRVGEK--------VHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           QFT  R+L +CA + +  + E         +H  ++  G  F   +   L+  Y      
Sbjct: 151 QFTNTRLL-SCATIPITALKECNSLAHAKLLHQQSIMQGLLFH--LATNLIGTYIASNST 207

Query: 246 VKARTVFDRI--GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
             A  + +R+      +  +N ++   +H G   + F ++R M   G+ PD      +  
Sbjct: 208 AYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFK 267

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD---HMPQKD 357
             AN S L +GA +H  V R G   ++ + N+++ +Y K G L  A  +FD   H   +D
Sbjct: 268 ACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQD 327

Query: 358 VVSWNSIIHAH---SKDHEALIYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           +VSWNS++ A+   S  + AL  F +M  R  + PD ++ V++L ACA L +   G ++ 
Sbjct: 328 LVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVH 387

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
              + + G+   V     +V++Y + G ++EA + + ++M+F+   V W A++      G
Sbjct: 388 GFSI-RSGLVDDVFVGNAVVDMYAKCGKMEEA-NKVFQRMKFK-DVVSWNAMVTGYSQAG 444

Query: 474 NVCMGETAAQKLFELEPDNEHNFEL-------LIKIYGNAGRLDDVERVERMLVDRG 523
            +      A  LFE     E N EL       +I  Y   G+  +   V R + D G
Sbjct: 445 RL----EHALSLFERM--TEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCG 495


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/448 (33%), Positives = 258/448 (57%), Gaps = 9/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++    V   T+ +L+E C +LK++    +++  I +N     K + +++L ++   G+I
Sbjct: 115 IRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMI 174

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A ++FD+M  R  F++  NS+ISG+   G YE+A  L+  M EE  + +  TF  +L+
Sbjct: 175 IDARRLFDEMPERNLFSY--NSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAVMLR 232

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A AGL  + VG+++H+ A++ G   + FV   L+DMY+KCGDI  AR  F+ +  K  ++
Sbjct: 233 ASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVA 292

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVL 319
           +N+++ GY  HG   EA  +   M  +G   D   +S    I    + L +  Q H  ++
Sbjct: 293 WNNIVAGYALHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLI 352

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R G E ++    +L+  YSK G++D A ++FD +P+K+++SWN+++     H +  +A+ 
Sbjct: 353 RSGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVR 412

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+M    V P+H+TF+++LSACA+ G  + G  +F  M E +GI PR  HYACM+ L 
Sbjct: 413 LFERMIAAKVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELL 472

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR GL+DEA + I  +   + +  +W ALL AC + GN+ +G   A+KL+ + P+   N+
Sbjct: 473 GRDGLLDEAIAFI-RRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLGNY 531

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  +Y + G+  +   V   L  +GL
Sbjct: 532 VVLYNMYNSMGKTAEAAGVLETLESKGL 559


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 257/448 (57%), Gaps = 12/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+ S+L  C  L+ +E G+++H  I  N    N  + S L+ L++  G +++A
Sbjct: 133 GVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDA 192

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F+ MS R   +  WN++I GYA     +D+  +++ M  EGV PD FT   VLKA +
Sbjct: 193 RYLFETMSERDVVS--WNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASS 250

Query: 206 -GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
               LI+V + +H   ++ GFG    +  +L+D YAK   +  A  ++  +  KD+IS+ 
Sbjct: 251 RANNLIKVCQ-IHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFT 309

Query: 265 SMLTGYIHH-GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           +++TGY        EA D+F+ M     + D V   ++L   A+ + L IG Q+H   ++
Sbjct: 310 AIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIK 369

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIY 377
               +D+   N+L+ +Y+K G+++ A   F  M +K+V+SW S+I  + K    HEA+  
Sbjct: 370 YKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIAL 429

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           +++ME +G+ P+ +TF+SLL AC+H G    G   F+ M+ KY I PR EHY+CM++L+ 
Sbjct: 430 YKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFA 489

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G ++EAY+MI  KM  + +  +WGA+L AC ++G++ +GE AA  L  ++P+N  N+ 
Sbjct: 490 RGGQLEEAYNMIC-KMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYV 548

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L  IY  +G  D   R+  ++  R L+
Sbjct: 549 VLAGIYAASGSWDKACRMRNLMEYRSLK 576



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 242/468 (51%), Gaps = 49/468 (10%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +  +  +L+ C + + ++ G  +H  I  N    N  +S+KL+  Y  FG    A +V
Sbjct: 35  LSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKV 94

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M  R   +  W + ISGYA+ G Y+DA+ ++ QM   GV  +QFT+  VL+AC GL 
Sbjct: 95  FDRMPERNVVS--WTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLR 152

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G ++H    +  F  + FV +ALVD+++KCG++  AR +F+ +  +D++S+N+++ 
Sbjct: 153 CLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIG 212

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----LLRIGAQVHGWVLRRGVE 324
           GY       ++F +F  M+  G  PD   + S+L  +S    L+++  Q+HG +++ G  
Sbjct: 213 GYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKV-CQIHGIIIQLGFG 271

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQ 380
             + +  SLI  Y+K   +  A  L+  M +KDV+S+ +I+  +++      EAL  F+ 
Sbjct: 272 SHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKD 331

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M+   +  D +TF ++L+ CA + S+ +G ++ ++ + KY  S  V     +V++Y ++G
Sbjct: 332 MQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAI-KYKPSYDVATGNALVDMYAKSG 390

Query: 441 LIDEA----YSM--------------------------IVEKMEFEA---SPVVWGALLY 467
            I++A    Y M                          + +KME+E    + + + +LL+
Sbjct: 391 EIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLF 450

Query: 468 ACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDV 512
           AC   G    G      +   + + P  EH +  +I ++   G+L++ 
Sbjct: 451 ACSHSGLTGEGWECFNNMITKYNILPRAEH-YSCMIDLFARGGQLEEA 497


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 261/439 (59%), Gaps = 11/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SLL    +L + + G ++H       +  +  +++ L+ +YA FG +++A  +F+QM
Sbjct: 323 TLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQM 382

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R   +  WN++I+   + G   +A  L   M++ G  P+  T   VL ACA +  +++
Sbjct: 383 KDRNVVS--WNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKM 440

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  ++R G  FD F+ NAL+DMY+KCG +  AR +F+R   KD +SYN+++ GY  
Sbjct: 441 GKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQ 499

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCI 329
                E+  +F+ M   G D D V+    L+   N S+ + G ++H  ++RR +     +
Sbjct: 500 SPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFL 559

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
           +NSL+ +Y+K G L  A  +F+ + +KDV SWN++I     H +   A   FE M+ DG+
Sbjct: 560 SNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGL 619

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             DH++++++L+AC+H G V  G++ FS MV +  I P+  HYACMV+L GRAG + +  
Sbjct: 620 DYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQLSKC- 677

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           + I+  M F A+  VWGALL AC +HGN+ + + AA+ LFEL+P++   + L+I +Y   
Sbjct: 678 AEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAET 737

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++  ++ +++  R ++
Sbjct: 738 GRWNEANKIRKLMKSRKVQ 756



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 226/416 (54%), Gaps = 16/416 (3%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S +++G  +   +  S++  C   +  + G+ +H L     L     +++ L+ +Y  
Sbjct: 208 LVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGK 267

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
           FG ++ + QVFD M  +   +  WNS I  +   G Y D + ++ +M E  V P   T  
Sbjct: 268 FGDVEASMQVFDGMLEQNEVS--WNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLS 325

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +L A   LG   +G +VH  +++     D FV N+LVDMYAK G + KA T+F+++ ++
Sbjct: 326 SLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDR 385

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           +++S+N+M+   + +G   EAF +   M  +G  P+ + + ++L   A  + L++G Q+H
Sbjct: 386 NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIH 445

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
            W +RRG+ +DL I+N+LI +YSK G+L  A  +F+   +KD VS+N++I  +S+     
Sbjct: 446 AWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCF 504

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           E+L+ F+QM   G+  D ++F+  LSAC +L   K G+ +  V+V +  +S        +
Sbjct: 505 ESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL-LSGHPFLSNSL 563

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           ++LY + G++  A S I  K+  +     W  ++    +HG +      A +LFEL
Sbjct: 564 LDLYTKGGMLVTA-SKIFNKIT-KKDVASWNTMILGYGMHGQI----DIAFELFEL 613



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 176/331 (53%), Gaps = 10/331 (3%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  YA  G   +A +VFD+M  R   +  WNSL+S +   G + DA      M   G
Sbjct: 158 NTLVAFYAACGKACDARRVFDEMPERDVVS--WNSLVSAFLVNGMFHDARRALVSMMRSG 215

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
              +  +   V+ AC      + G  +H  AV+ G      + NALVDMY K GD+  + 
Sbjct: 216 FPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASM 275

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANAS 306
            VFD +  ++ +S+NS +  +++ G   +   +FR M  +   P  + +SS+   L    
Sbjct: 276 QVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELG 335

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
              +G +VHG+ ++R ++ D+ +ANSL+ +Y+K G L++A  +F+ M  ++VVSWN++I 
Sbjct: 336 SFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIA 395

Query: 367 ---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               +  + EA      M++ G  P+ +T V++L ACA + S+K+G+++ +  + + G+ 
Sbjct: 396 NLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR-GLM 454

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
             +     ++++Y + G +  A + I E+ E
Sbjct: 455 FDLFISNALIDMYSKCGQLSLARN-IFERSE 484



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 168/347 (48%), Gaps = 11/347 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++  LL  YA    +  A  V      R   AF WNSL    +      +A+ +Y  M  
Sbjct: 51  LAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLR 110

Query: 188 EGVEPDQFTFPRVLKACAGLGLIR--VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
             V PD  TFP  L A A         G ++H  A+R G   D F  N LV  YA CG  
Sbjct: 111 SAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAFYAACGKA 170

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             AR VFD +  +D++S+NS+++ ++ +G+  +A      M+ +GF  +  ++ S++   
Sbjct: 171 CDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPAC 230

Query: 306 SL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
                 + G  +H   ++ G+   + +AN+L+ +Y K G ++ +  +FD M +++ VSWN
Sbjct: 231 GTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWN 290

Query: 363 SIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           S I          + L  F +M    V+P  +T  SLL A   LGS  +G  +    +++
Sbjct: 291 SAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKR 350

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             +   +     +V++Y + G +++A S I E+M+ + + V W A++
Sbjct: 351 -AMDLDIFVANSLVDMYAKFGSLEKA-STIFEQMK-DRNVVSWNAMI 394


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 258/445 (57%), Gaps = 9/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+  +L TC   + ++ G ++H L        +  +S  L+ +Y+ +G +++A
Sbjct: 340 GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +V + +  +   +  W S+I+GY +    +DA+A + +M++ G+ PD       +  CA
Sbjct: 400 RRVLEMLKEKDVVS--WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCA 457

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +R G ++H      G+  D  + NALV++YA+CG I +A + F+ +  KD I+ N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNG 517

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASLLRI--GAQVHGWVLRRG 322
           +++G+   GL  EA  +F  M  +G   +    +S++ A+A+L  I  G Q+H  V++ G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
             ++  + N+LI +Y K G  + A   F  M +++ VSWN+II +   H +  EAL  F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM+++G+ P+ +TF+ +L+AC+H+G V+ G   F  M ++YGI PR +HYAC+++++GRA
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRA 697

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D A   I E+M   A  +VW  LL AC +H N+ +GE AA+ L ELEP +  ++ LL
Sbjct: 698 GQLDRAKKFI-EEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLL 756

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
              Y    +  + ++V +M+ DRG+
Sbjct: 757 SNAYAVTEKWANRDQVRKMMRDRGV 781



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 216/399 (54%), Gaps = 19/399 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G++    T +SLL  C  L  ++ G +LH  +    +  +  +   LL LY   G ++ 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F+  S+RT     WN ++  + ++ +   +  L+ QM+  G+ P+QFT+P +L+ C
Sbjct: 298 ALVIFNS-SDRTNVVL-WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                I +GE++H  +V+ GF  D +V   L+DMY+K G + KAR V + +  KD++S+ 
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM+ GY+ H    +A   F+ M   G  PD + ++S +   A  + +R G Q+H  +   
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ I N+L+ +Y++ G++ +A   F+ M  KD ++ N ++   ++     EAL  F
Sbjct: 476 GYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVF 535

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M++ GV  +  TFVS LSA A+L  +K G+++ + ++ K G S   E    +++LYG+
Sbjct: 536 MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI-KTGHSFETEVGNALISLYGK 594

Query: 439 AGLIDEAYSMIVEKMEF----EASPVVWGALLYACYLHG 473
            G  ++A      KMEF    E + V W  ++ +C  HG
Sbjct: 595 CGSFEDA------KMEFSEMSERNEVSWNTIITSCSQHG 627



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 211/405 (52%), Gaps = 18/405 (4%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H    T  L K + + + L+ LY+  GL+  A +VF+++S R   +  W +++SGYA+
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS--WVAMLSGYAQ 120

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G  E+A+ LY QM   GV P  +    VL +C    L   G  +H    + GF  + FV
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NA++ +Y +CG    A  VF  + ++D +++N++++G+   G    A +IF  M  +G 
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 292 DPDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD V ISS+LA  ASL  L+ G Q+H ++ + G+  D  +  SL+ +Y K G ++ A  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSLLSACAHLGS 405
           +F+   + +VV WN ++ A  + ++    FE   QM+  G+ P+  T+  +L  C     
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +GE++ S+ V K G    +     ++++Y + G +++A  ++  +M  E   V W ++
Sbjct: 361 IDLGEQIHSLSV-KTGFESDMYVSGVLIDMYSKYGWLEKARRVL--EMLKEKDVVSWTSM 417

Query: 466 LYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAG 507
           + A Y+    C    AA K  +   + PD   N  L   I G AG
Sbjct: 418 I-AGYVQHECCKDALAAFKEMQKCGIWPD---NIGLASAISGCAG 458



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 152/279 (54%), Gaps = 10/279 (3%)

Query: 197 FPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           F   L+AC G G   +V  ++H  AV  G G    V N L+D+Y+K G ++ AR VF+ +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGA 312
             +D +S+ +ML+GY  +GL  EA  ++R M   G  P P  +SS+L++   A L   G 
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            +H    + G   ++ + N++I +Y + G    A  +F  MP +D V++N++I  H++  
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
               AL  FE+M+  G+ PD +T  SLL+ACA LG ++ G +L S +  K GIS      
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF-KAGISSDYIME 282

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
             +++LY + G ++ A  +++       + V+W  +L A
Sbjct: 283 GSLLDLYVKCGDVETA--LVIFNSSDRTNVVLWNLMLVA 319



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           Q+G+     TF S L     L  ++ G ++H R+I T    + + + + L+ LY   G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE-VGNALISLYGKCGSF 598

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F +MS R   +  WN++I+  ++ G   +A+ L+ QM++EG++P+  TF  VL 
Sbjct: 599 EDAKMEFSEMSERNEVS--WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLA 656

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGF----DGFVLNALVDMYAKCGDIVKARTVFDRIG-N 257
           AC+ +GL+  G   +  ++   +G     D +    ++D++ + G + +A+   + +   
Sbjct: 657 ACSHVGLVEEGLS-YFKSMSDEYGIRPRPDHYA--CVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 258 KDLISYNSMLTG-YIHHGLLVEAF 280
            D + + ++L+   +H  + V  F
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEF 737


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 166/514 (32%), Positives = 270/514 (52%), Gaps = 62/514 (12%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           PK  L+    +  +       G      T  ++L  C  +     G + H    T+ + +
Sbjct: 209 PKMALEMFSKMTNEF------GFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQ 262

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + L+ +YA FG++DEA+ VF  M  +   +  WN++++GY+++G +EDA+ L+ Q
Sbjct: 263 NMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS--WNAMVAGYSQIGRFEDAVRLFEQ 320

Query: 185 MEEE-----------------------------------GVEPDQFTFPRVLKACAGLGL 209
           M+EE                                   G++P++ T   VL  CA +G 
Sbjct: 321 MQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380

Query: 210 IRVGEKVHLDAVRF-------GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK--DL 260
           +  G+++H  A+++       G G +  V+N L+DMYAKC  +  AR +FD +  K  D+
Sbjct: 381 LMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDV 440

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASL--LRIGAQVH 315
           +++  M+ GY  HG   +A ++   M        P A +   +++A ASL  L IG Q+H
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIH 500

Query: 316 GWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
            + LR       L ++N LI +Y+K G +  A  +FD+M +K+ V+W S++     H   
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYG 560

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EAL  FE+M R G   D +T + +L AC+H G +  G   F+ M   +G+SP  EHYAC
Sbjct: 561 EEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYAC 620

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +V+L GRAG ++ A  +I E+M  E  PVVW ALL  C +HG V +GE AA+K+ EL  +
Sbjct: 621 LVDLLGRAGRLNAALRLI-EEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASN 679

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           N+ ++ LL  +Y NAGR  DV R+  ++  +G++
Sbjct: 680 NDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIK 713



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 203/454 (44%), Gaps = 57/454 (12%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T  F    +T  Q+K +       +L+   +L  N  ++S L+  Y + G +  A  +  
Sbjct: 31  TPPFIHKCKTISQVKLIHQ-----KLLSFGILTLN--LTSHLISTYISLGCLSHAVSLLR 83

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +     A  + WNSLI  Y   G     ++ +  M      PD +TFP V KAC  +  +
Sbjct: 84  RFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSV 143

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R G+  H  +   GF  + FV NALV MY++CG +  AR VFD +   D++S+NS++  Y
Sbjct: 144 RCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESY 203

Query: 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
              G    A ++F  M    GF PD + + ++L   A+     +G Q HG+ +   +  +
Sbjct: 204 AKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQN 263

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---------------- 370
           + + N L+ +Y+K G +D+A  +F +MP KDVVSWN+++  +S+                
Sbjct: 264 MFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQE 323

Query: 371 ----------------------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
                                  +EAL    QM   G+ P+ +T +S+LS CA +G++  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 409 GERLFSVMVEKYGISPRVEHYA-------CMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           G+ +    + KY +  R   +         ++++Y +   +D A +M       E   V 
Sbjct: 384 GKEIHCYAI-KYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVT 442

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           W  ++     HG+         ++FE +     N
Sbjct: 443 WTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/521 (26%), Positives = 232/521 (44%), Gaps = 93/521 (17%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
           T    TF  + + C ++ +V  G   H L        N  + + L+ +Y+  G + +A +
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARK 183

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAG 206
           VFD+M      +  WNS+I  YA+LG+ + A+ ++ +M  E G  PD  T   VL  CA 
Sbjct: 184 VFDEMPVWDVVS--WNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCAS 241

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           +G   +G++ H  AV      + FV N LVDMYAK G + +A TVF  +  KD++S+N+M
Sbjct: 242 VGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAM 301

Query: 267 -----------------------------------LTGYIHHGLLVEAFDIFRGMILNGF 291
                                              ++GY   GL  EA  + R M+ +G 
Sbjct: 302 VAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW-------DLCIANSLIVVYSKDG 341
            P+ V + S+L   A+   L  G ++H + ++  ++        +  + N LI +Y+K  
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 342 KLDQACWLFDHMP--QKDVVSWNSIIHAHSKDHEA----LIYFEQMERDG-VLPDHLTFV 394
           K+D A  +FD +   ++DVV+W  +I  +S+  +A     +  E  E D    P+  T  
Sbjct: 422 KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--------- 445
             L ACA L ++ +G+++ +  +     +  +    C++++Y + G I +A         
Sbjct: 482 CALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMME 541

Query: 446 ------------YSM---------IVEKME---FEASPVVWGALLYACYLHGNVCMGETA 481
                       Y M         I E+M    F+   V    +LYAC   G +  G   
Sbjct: 542 KNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601

Query: 482 AQKL---FELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
             ++   F + P  EH +  L+ + G AGRL+   R +E M
Sbjct: 602 FNRMKTDFGVSPGPEH-YACLVDLLGRAGRLNAALRLIEEM 641


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 253/444 (56%), Gaps = 10/444 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+ S L  C  L+ ++ GI++   I      +N  + S L+  ++  G +++A
Sbjct: 247 GVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDA 306

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F  M  R   +  WN++I GYA  G  +D+  ++  M   G+ PD +T   VL+A A
Sbjct: 307 SYLFGTMMERDVVS--WNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASA 364

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G + +  ++H    + G+G    V   L++ YAK G +  A+ +   +  KDL S  +
Sbjct: 365 EGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTA 424

Query: 266 MLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++TGY H G+  V+A D+F+ M       D V + S+L   AN +   +G Q+H + L+ 
Sbjct: 425 LITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKY 484

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
              +D+ + N+LI +Y+K G+++ A   FD M +K+V+SW S+I  ++K    H A+  +
Sbjct: 485 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLY 544

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++ME  G  P+ +TF+SLL AC+H G    G   F+ MV KY I PR EHY+CMV+L+ R
Sbjct: 545 KKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFAR 604

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            GL++EAY+++  K++ + +  +WGA+L A  ++G + +G+ AA  LF ++P+N  N+ +
Sbjct: 605 QGLLEEAYNLLC-KIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVV 663

Query: 499 LIKIYGNAGRLDDVERVERMLVDR 522
           L  IY  AG  DD  ++ +++ +R
Sbjct: 664 LASIYSAAGLWDDAWKIRKLMEER 687



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 204/404 (50%), Gaps = 24/404 (5%)

Query: 77  QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
           Q LES    GI             C   KA + G  +H  + TN    +  +++KL+  Y
Sbjct: 149 QKLESKYYEGIL------------CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFY 196

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
              G +  A  VFD M  R+  +  W +++SGY++ G +E A  L+  M   GV+ +QFT
Sbjct: 197 VKVGDVIAARNVFDGMPERSVVS--WTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFT 254

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           +   L+AC  L  + +G +V     +  F  + FV +ALVD ++KCG +  A  +F  + 
Sbjct: 255 YGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMM 314

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ 313
            +D++S+N+M+ GY   G   ++F +FR M+  G  PD   + S+L   A    L I  Q
Sbjct: 315 ERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQ 374

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH- 372
           +HG + + G      +   LI  Y+K+G L  A  L   M +KD+ S  ++I  ++ +  
Sbjct: 375 IHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGI 434

Query: 373 ---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              +AL  F++M +  +  D +   S+L+ CA+L S  +G ++ +  + KY  S  V   
Sbjct: 435 YSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFAL-KYQPSYDVAMG 493

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             ++++Y ++G I++A     ++ME E + + W +L+     HG
Sbjct: 494 NALIDMYAKSGEIEDA-KRAFDEME-EKNVISWTSLISGYAKHG 535


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 162/448 (36%), Positives = 247/448 (55%), Gaps = 12/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+   T T +S+L  C  L      + +H     + L K   + + L+ +Y   G++
Sbjct: 161 VGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGML 220

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           +EA  VF  M  R      WNS+ISG  + G+   A+ ++  M   GV PD  T   +  
Sbjct: 221 EEAQCVFHGMECRDLVT--WNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLAS 278

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           A A  G  R  + +H   +R G+  D  +  NA+VDMYAK  +I  A+ +FD +  +D +
Sbjct: 279 AIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSV 338

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMI----LNGFDPDPVAISSILANASLLRIGAQVHGW 317
           S+N+++TGY+ +GL  EA + +  M     L       V++    ++   L+ G ++H  
Sbjct: 339 SWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHAL 398

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            ++ G+  D+ +   LI +Y+K GKL +A  LF+ MP++    WN+II     H    EA
Sbjct: 399 SIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEA 458

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F +M+++G+ PDH+TFVSLL+AC+H G V  G   F VM   Y I P  +HYACM +
Sbjct: 459 LTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMAD 518

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           + GRAG +DEA++ I + M  +    VWGALL AC +HGNV MG+ A+Q LFEL+P+N  
Sbjct: 519 MLGRAGQLDEAFNFI-QNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVG 577

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522
            + L+  +Y   G+ D V+ V R LV R
Sbjct: 578 YYVLMSNMYAKVGKWDGVDEV-RSLVRR 604



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 223/400 (55%), Gaps = 16/400 (4%)

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
           L+R +   S  L+  Y  FG I EA++VFD+MS R   A  WN+++SG        +A+ 
Sbjct: 98  LVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPA--WNAMLSGLCRNARAAEAVG 155

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           L+ +M  EGV  D  T   VL  C  LG   +   +H+ AV+ G   + FV NAL+D+Y 
Sbjct: 156 LFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYG 215

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VA 297
           K G + +A+ VF  +  +DL+++NS+++G    G    A  +F+GM  +G  PD    V+
Sbjct: 216 KLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVS 275

Query: 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIA-NSLIVVYSKDGKLDQACWLFDHMPQK 356
           ++S +A     R    +H +V+RRG + D  IA N+++ +Y+K   ++ A  +FD MP +
Sbjct: 276 LASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ 335

Query: 357 DVVSWNSIIHAHSKD---HEALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           D VSWN++I  + ++   +EA+  +  M++ +G+     TFVS+L A +HLG+++ G R+
Sbjct: 336 DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM 395

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            ++ + K G++  V    C+++LY + G + EA  ++ EKM    S   W A++    +H
Sbjct: 396 HALSI-KIGLNVDVYVGTCLIDLYAKCGKLAEAM-LLFEKMP-RRSTGPWNAIISGLGVH 452

Query: 473 GNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLD 510
           G+     T   ++ +  ++PD+   F  L+    +AG +D
Sbjct: 453 GHGAEALTLFSRMQQEGIKPDHV-TFVSLLAACSHAGLVD 491



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 143/286 (50%), Gaps = 18/286 (6%)

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKAR 249
            PD FTFP +++A           ++H  A+R G      F   +LV  Y + G I +A 
Sbjct: 67  RPDGFTFPSLIRAAPSNA---SAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAY 123

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309
            VFD +  +D+ ++N+ML+G   +    EA  +F  M+  G   D V +SS+L    LL 
Sbjct: 124 KVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL- 182

Query: 310 IGAQV-----HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            G QV     H + ++ G++ +L + N+LI VY K G L++A  +F  M  +D+V+WNSI
Sbjct: 183 -GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKY 420
           I       +   AL  F+ M   GV PD LT VSL SA A  G  +  + L   VM   +
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +   +   A +V++Y +   I+ A  M  + M  + S V W  L+
Sbjct: 302 DVDDIIAGNA-IVDMYAKLSNIEAAQRMF-DSMPVQDS-VSWNTLI 344



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 13/230 (5%)

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNG--FDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           N+++  +    L   AF + R ++     F PD     S++  A      AQ+H   LR 
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQLHACALRL 96

Query: 322 G-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
           G V   +  + SL+  Y + G++ +A  +FD M ++DV +WN+++     +++  EA+  
Sbjct: 97  GLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGL 156

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M  +GV  D +T  S+L  C  LG  +V   +  V   K+G+   +     ++++YG
Sbjct: 157 FGRMVGEGVAGDTVTVSSVLPMCVLLGD-QVLALVMHVYAVKHGLDKELFVCNALIDVYG 215

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           + G+++EA   +   ME     V W +++  C   G       AA K+F+
Sbjct: 216 KLGMLEEA-QCVFHGMECR-DLVTWNSIISGCEQRGQT----AAALKMFQ 259


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 160/515 (31%), Positives = 285/515 (55%), Gaps = 12/515 (2%)

Query: 18  IHCGSKNKRSRKQRRQKQQQISRN-RITTFSSYPKSSPTPLLTN-QKAFPKTKLQALDSI 75
           I C S   +  K + +K + + RN  +   +   K+SP+ L +  +K     + +    +
Sbjct: 44  ICCSSSMDQKLKPKPKKVEYMERNVPVLEDTQIRKTSPSGLCSQIEKLVVCNRHREAMEL 103

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
            + LE    +G  V   T+ +L+  C  L+++    ++   +  +    +  + +++L +
Sbjct: 104 FEILELE-HDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFM 162

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           +   GL+ +A ++FD+M  +   +  W +++ G  + G + +A  L+  M +E  +    
Sbjct: 163 HVKCGLMLDARKLFDEMPEKDVAS--WMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSR 220

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF  +++A AGLGL++VG+++H  A++ G G D FV  AL+DMY+KCG I  A  VFD++
Sbjct: 221 TFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQM 280

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGA 312
             K  + +NS++  Y  HG   EA  ++  M  +G   D   IS    I A  + L    
Sbjct: 281 PEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAK 340

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           Q H  ++R G   D+    +L+  YSK G+++ A  +F+ M  K+V+SWN++I     H 
Sbjct: 341 QAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHG 400

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           +  EA+  FEQM ++GV P H+TF+++LSAC++ G  + G  +F  M   + + PR  HY
Sbjct: 401 QGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHY 460

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           ACM+ L GR  L+DEAY++I     F+ +  +W ALL AC +H N+ +G+ AA+KL+ +E
Sbjct: 461 ACMIELLGRESLLDEAYALI-RTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGME 519

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           P+   N+ +L+ +Y ++G+L +   + + L  +GL
Sbjct: 520 PEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGL 554


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 254/430 (59%), Gaps = 9/430 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +ET+ +L+  C  LK++    K+   +  + L  ++ + +++L ++   G++ +A ++
Sbjct: 129 MDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M  +   +  WN++I G  + G+Y +A  L+  M ++  +     F  +++A AGLG
Sbjct: 189 FDEMPEKNILS--WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLG 246

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           LI  G ++H  +++ G G D FV  AL+DMY+KCG I  A+ VFD++  K  + +NS++ 
Sbjct: 247 LIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIA 306

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           GY  HG   EA  ++  M  +G   D    S I+   A  + L    Q H  ++R G   
Sbjct: 307 GYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGL 366

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D+    +L+ +YSK G+++ A  +FD MP K+V+SWN++I     H +  EA+  FE+M 
Sbjct: 367 DIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +G++P+H+TF+++LSAC++ G    G  +F  M   + I PR  HYACM+ L GR GL+
Sbjct: 427 HEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLL 486

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           DEA+++I +   F+ +  +W ALL AC +H N  +G+ AA+KL+ + P+   N+ +L+ I
Sbjct: 487 DEAFALI-KDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 503 YGNAGRLDDV 512
           Y  +GRL++ 
Sbjct: 546 YNRSGRLEEA 555



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 186/369 (50%), Gaps = 47/369 (12%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           +  F +++     L  +  G +LH       +  +  ++  L+ +Y+  G I++A  VFD
Sbjct: 232 SRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFD 291

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           QM  +T     WNS+I+GYA  G  E+A+++Y++M + GV+ D FTF  +++ CA L  +
Sbjct: 292 QMPEKTTVG--WNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASL 349

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
              ++ H   VR GFG D     ALVD+Y+K G I  A+ VFD + +K++IS+N+++ GY
Sbjct: 350 EHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGY 409

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA 330
            +HG  VEA ++F  M+  G  P+ V   ++L+  S    G    GW +   +  D  I 
Sbjct: 410 GNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSY--SGLSDRGWEIFESMSRDHKIK 467

Query: 331 ------NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
                   +I +  ++G LD+A  L    P K  V+                        
Sbjct: 468 PRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVN------------------------ 503

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISP-RVEHYACMVNLYGRAGLI 442
                   + +LL+AC    + ++G+       EK YG+ P ++ +Y  ++N+Y R+G +
Sbjct: 504 -------MWAALLTACRVHKNFELGK----FAAEKLYGMGPEKLSNYVVLLNIYNRSGRL 552

Query: 443 DEAYSMIVE 451
           +EA ++++E
Sbjct: 553 EEAAALMLE 561



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLYATFG 140
           +G+ +   TF+ ++  C +L ++EH  + H      L+R   G+    ++ L+ LY+ +G
Sbjct: 327 SGVKIDNFTFSIIIRICARLASLEHAKQAH----AGLVRHGFGLDIVANTALVDLYSKWG 382

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            I++A  VFD M ++   +  WN+LI+GY   G   +A+ ++ +M  EG+ P+  TF  V
Sbjct: 383 RIEDAKHVFDMMPHKNVIS--WNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 201 LKACAGLGLIRVGEKV 216
           L AC+  GL   G ++
Sbjct: 441 LSACSYSGLSDRGWEI 456


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 158/439 (35%), Positives = 254/439 (57%), Gaps = 10/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+S+L        V HG +LH LI  +    N  + + L+ +YA    +  A +VFDQM
Sbjct: 12  TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 71

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIR 211
             R   +  WNS+I G+     Y+ A+ ++   + E+ V P++ +   VL ACA +G + 
Sbjct: 72  PERNLVS--WNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLN 129

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G +VH   V+FG     +V+N+L+DMY KC    +   +F  +G++D++++N ++ G++
Sbjct: 130 FGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFV 189

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLC 328
            +    EA + F  M   G  PD  + S++L ++ASL  L  G  +H  +++ G   ++C
Sbjct: 190 QNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMC 249

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           I  SLI +Y+K G L  A  +F+ +   +V+SW ++I A   H   ++ +  FE M  +G
Sbjct: 250 ILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG 309

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P H+TFV +LSAC+H G V+ G   F+ M + + ++P  EHYACMV+L GRAG +DEA
Sbjct: 310 IEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEA 369

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I E M  + +P VWGALL AC  +GN+ MG  AA++LFE+EP N  N+ LL  +   
Sbjct: 370 KRFI-ESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTR 428

Query: 506 AGRLDDVERVERMLVDRGL 524
           +GRL++   V R++   G+
Sbjct: 429 SGRLEEANEVRRLMGVNGV 447



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 190/380 (50%), Gaps = 50/380 (13%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M   G  P+QFTF  +L A A   ++  G+++H    + GF  + FV  ALVDMYAKC D
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL-NGFDPDPVAISSIL- 302
           +  A  VFD++  ++L+S+NSM+ G+ H+ L   A  +F+ ++      P+ V++SS+L 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             AN   L  G QVHG V++ G+     + NSL+ +Y K    D+   LF  +  +DVV+
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WN ++     + K  EA  YF  M R+G+LPD  +F ++L + A L ++  G  +   ++
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN--- 474
            K G    +     ++ +Y + G + +AY  + E +E + + + W A++ A  LHG    
Sbjct: 241 -KLGYVKNMCILGSLITMYAKCGSLVDAYQ-VFEGIE-DHNVISWTAMISAYQLHGCANQ 297

Query: 475 --------------------VCMGETAA---------------QKLFELEPDNEHNFELL 499
                               VC+    +               +K+ ++ P  EH +  +
Sbjct: 298 VIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEH-YACM 356

Query: 500 IKIYGNAGRLDDVER-VERM 518
           + + G AG LD+ +R +E M
Sbjct: 357 VDLLGRAGWLDEAKRFIESM 376



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI     +F+++L +   L A+  G  +H  I      KN  I   L+ +YA  G + 
Sbjct: 206 REGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLV 265

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A+QVF+ + +    +  W ++IS Y   G     I L+  M  EG+EP   TF  VL A
Sbjct: 266 DAYQVFEGIEDHNVIS--WTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSA 323

Query: 204 CAGLGLIRVG 213
           C+  G +  G
Sbjct: 324 CSHTGRVEEG 333


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 257/449 (57%), Gaps = 9/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G++  + TFAS L +  +  +++ G ++H  I  + +  +  + S L+ +Y     +
Sbjct: 166 ISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDV 225

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++F Q +N         ++ISGY   G   DA+ ++  + EE + P+  T   VL 
Sbjct: 226 GMACKIFKQSTNVDIVV--CTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLP 283

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAGL  + +G+++H + ++ G      V +A++DMYAKCG +  A  +F R+  KD + 
Sbjct: 284 ACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVC 343

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+++T    +G   EA D+FR M   G   D V+IS+ L   AN   L  G  +H +++
Sbjct: 344 WNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMI 403

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +   + ++   ++LI +Y K G L  A  +FD M +K+ VSWNSII A   H     +L 
Sbjct: 404 KGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLA 463

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M  DG+ PDH+TF+++LSAC H G V  G + F  M E+YGI  R+EHYAC+V+L+
Sbjct: 464 LFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLF 523

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++EA+  I + M F     VWG LL AC +HGNV + E A++ L +L+P+N   +
Sbjct: 524 GRAGRLNEAFETI-KNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCY 582

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  ++ +AG+   V ++  ++  RG++
Sbjct: 583 VLLSNVHADAGQWGSVRKIRSLMKKRGVQ 611



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 237/429 (55%), Gaps = 20/429 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFAS+L  C      E G +LH L+ +     +  +++ L+ +Y+ FG + +A ++F+ M
Sbjct: 75  TFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTM 134

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +       WN +I+G+ + G  ++A  L+ +M   GV PD  TF   L +      ++ 
Sbjct: 135 PDTNVVT--WNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQ 192

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   +R G   D F+ +AL+D+Y KC D+  A  +F +  N D++   ++++GY+ 
Sbjct: 193 GKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVL 252

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL  +A +IFR ++     P+ V ++S+L   A  + L +G ++H  +L+ G++    +
Sbjct: 253 NGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHV 312

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGV 386
            ++++ +Y+K G+LD A  +F  MP+KD V WN+II     + K  EA+  F QM R+G+
Sbjct: 313 GSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGL 372

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA- 445
             D ++  + LSACA+L ++  G+ + S M+ K      V   + ++++YG+ G +  A 
Sbjct: 373 SYDCVSISAALSACANLPALHHGKAIHSFMI-KGAFDSEVFAESALIDMYGKCGNLSVAR 431

Query: 446 --YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPDNEHNFELLIK 501
             + M+ EK E     V W +++ A   HG++ +      K+ E  ++PD+   F  ++ 
Sbjct: 432 CVFDMMREKNE-----VSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHV-TFLTILS 485

Query: 502 IYGNAGRLD 510
             G+AG++D
Sbjct: 486 ACGHAGQVD 494



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 195/352 (55%), Gaps = 11/352 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S L++LYA  G I++A ++FD+M N+      WN +++G+ + GE   A+ ++  M  
Sbjct: 9   VGSSLIKLYAENGCIEDARRLFDKMPNKDCVL--WNVMLNGFVKCGEPNSAVKVFEDMRN 66

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
              +P+  TF  VL  CA   L   G ++H   +  GF FD  V NALV MY+K G +  
Sbjct: 67  CQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSD 126

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN--- 304
           A  +F+ + + +++++N M+ G++ +G + EA  +F  MI  G  PD +  +S L +   
Sbjct: 127 ALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTE 186

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           ++ L+ G ++HG++LR G+  D+ + ++LI +Y K   +  AC +F      D+V   +I
Sbjct: 187 SASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAI 246

Query: 365 IHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  +     +++AL  F  +  + + P+ +T  S+L ACA L ++ +G+ L + ++ K+G
Sbjct: 247 ISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANIL-KHG 305

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +  R    + ++++Y + G +D AY  I  +M  E   V W A++  C  +G
Sbjct: 306 LDERRHVGSAIMDMYAKCGRLDLAYQ-IFRRMP-EKDAVCWNAIITNCSQNG 355



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 164/340 (48%), Gaps = 41/340 (12%)

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GF  D FV ++L+ +YA+ G I  AR +FD++ NKD + +N ML G++  G    A  +
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M      P+ +  +S+L   A+ +L   G Q+HG V+  G  +D  +AN+L+ +YSK
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSL 396
            G+L  A  LF+ MP  +VV+WN +I    ++    EA + F +M   GV PD +TF S 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA----------------- 439
           L +     S+K G+ +   ++ ++GI+  V   + ++++Y +                  
Sbjct: 181 LPSVTESASLKQGKEIHGYIL-RHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVD 239

Query: 440 --------------GLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMG-ETAA 482
                         GL ++A  +    +E + SP  V   ++L AC     + +G E  A
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHA 299

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
             L     +  H    ++ +Y   GRLD   ++ R + ++
Sbjct: 300 NILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK 339


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 250/417 (59%), Gaps = 44/417 (10%)

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           +F++  ++T   F WNS+I+  A  G+  +A+  +  M +  ++P++ TFP  +K+C+ L
Sbjct: 31  LFNKYVDKTN-VFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
             +  G + H  A+ FGF  D FV +ALVDMY+KCG++  ART+FD I +++++S+ SM+
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 268 TGYIHH-------------------------------GLLVEAFDIFRGMILNG-FDPDP 295
           TGY+ +                               G+  E+ +IF  M+ +G  + + 
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           V +S++L   A++   R+G  +H  V++ G+E ++ +  S+I +Y K GK++ A   FD 
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 353 MPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           M +K+V SW++++     H H+K  EAL  F +M   GV P+++TFVS+L+AC+H G ++
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAK--EALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLE 327

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G   F  M  ++ + P VEHY CMV+L GRAG + EA+ +I + M+     VVWGALL 
Sbjct: 328 EGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLI-KGMKLRPDFVVWGALLG 386

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           AC +H NV +GE +A+KLFEL+P N   + LL  IY +AGR +DVER+  ++ + GL
Sbjct: 387 ACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGL 443



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 196/455 (43%), Gaps = 98/455 (21%)

Query: 51  KSSPTPLLTN--QKAFPKTKLQALDSIIQDLESSVQN-------------GITVQTETFA 95
           + S  P LT    K   KT + + +S+I +L  S  +              +     TF 
Sbjct: 21  RYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFP 80

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
             +++C  L  +  G + H+         +  +SS L+ +Y+  G + +A  +FD++S+R
Sbjct: 81  CAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR 140

Query: 156 TAFAF-----------------------------PWNSLISGYAELGEYEDAIALYFQME 186
              ++                              WNS+I+ YA+ G   +++ ++ +M 
Sbjct: 141 NIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMV 200

Query: 187 EEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           ++G +  +  T   VL ACA  G  R+G+ +H   ++ G   + FV  +++DMY KCG +
Sbjct: 201 KDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKV 260

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA-- 303
             AR  FDR+  K++ S+++M+ GY  HG   EA ++F  M + G  P+ +   S+LA  
Sbjct: 261 EMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 320

Query: 304 -NASLLRIG-----AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
            +A LL  G     A  H + +  GVE   C+ + L     + G L +A           
Sbjct: 321 SHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLL----GRAGYLKEA----------- 365

Query: 358 VVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE----RLF 413
                               F+ ++   + PD + + +LL AC    +V +GE    +LF
Sbjct: 366 --------------------FDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLF 405

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
            +  +  G      +Y  + N+Y  AG  ++   M
Sbjct: 406 ELDPKNCG------YYVLLSNIYADAGRWEDVERM 434



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 125/265 (47%), Gaps = 44/265 (16%)

Query: 250 TVFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD----PVAISSILAN 304
           T+F++  +K ++ S+NS++      G  VEA   F  M      P+    P AI S  A 
Sbjct: 30  TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
             L   G Q H   L  G E DL ++++L+ +YSK G+L  A  LFD +  +++VSW S+
Sbjct: 90  LDL-HSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSM 148

Query: 365 IHAHSKD---HEAL-------------------IY------------FEQMERDGVLP-D 389
           I  + ++   H AL                   +Y            F +M +DG +  +
Sbjct: 149 ITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYN 208

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            +T  ++L ACAH GS ++G+ +   ++ K G+   V     ++++Y + G ++ A    
Sbjct: 209 AVTLSAVLLACAHSGSQRLGKCIHDQVI-KMGLESNVFVGTSIIDMYCKCGKVEMARKAF 267

Query: 450 VEKMEFEASPVVWGALLYACYLHGN 474
            ++M  E +   W A++    +HG+
Sbjct: 268 -DRMR-EKNVKSWSAMVAGYGMHGH 290


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 259/461 (56%), Gaps = 23/461 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     T+ S+L  C + + +  G  +H       +  N    + L+ +YA  G + 
Sbjct: 143 KNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLA 202

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP----------- 192
            A +VFD M  R   +  WNS+IS YA +G++ +A+ L+ +M +EG EP           
Sbjct: 203 SARKVFDGMVQRDVVS--WNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVRGG 260

Query: 193 ---DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
              D  T    L AC+ +G +R+G+++H  AVR        V NAL+ MYA+C D+  AR
Sbjct: 261 AEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECAR 320

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NAS 306
            +F  +    ++++N+ML+ +       EA  IFR MI  G  P+ V + + LA     +
Sbjct: 321 MLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVA 380

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L+ G ++HG +++ G +    + NSLI +YSK G+L  A  +FD M   D++S+ S+I 
Sbjct: 381 NLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIA 440

Query: 367 AHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            +    K   AL  FEQM   G+ PDH+  V++LSAC+H G V  GE LF+ MV  YGI 
Sbjct: 441 GYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIK 500

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P++EHY+CM++LY RAGL+++A  M+ +   F  +  +W AL+ AC+  GN+ +GE AA+
Sbjct: 501 PQMEHYSCMIDLYARAGLLEKAEEML-DHTPFPPTSTMWAALVGACHDRGNIEIGERAAR 559

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           KL E+  +N  ++ L+  +Y  AG  D++  V +++ D G+
Sbjct: 560 KLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGV 600



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 189/395 (47%), Gaps = 63/395 (15%)

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG--FVLNALVDMY 239
           Y +M + GV PD FT+P VL+ACA    + +G  VH+ A   G G DG  F  NAL+ MY
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAA--GAGMDGNLFFQNALMSMY 195

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           AKCGD+  AR VFD +  +D++S+NSM++ Y   G   EA ++FR M   G +P  +   
Sbjct: 196 AKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIRE 255

Query: 300 SILANASL-----------------LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
            +   A +                 LR+G ++HG  +R   +    ++N+LI +Y++   
Sbjct: 256 MVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKD 315

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSA 399
           ++ A  LF  +    VV+WN+++ + +      EA   F +M   GV P+++T V+ L+ 
Sbjct: 316 MECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLAL 375

Query: 400 CAHLGSVKVGER---------------LFSVMVEKYGISPRVE---------------HY 429
           CA + +++ G+                L++ +++ Y  S R+                 Y
Sbjct: 376 CARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISY 435

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKL-- 485
             M+  YG  G    A  +  + ++    P  ++   +L AC   G V  GE    K+  
Sbjct: 436 TSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVI 495

Query: 486 -FELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            + ++P  EH +  +I +Y  AG L   E+ E ML
Sbjct: 496 SYGIKPQMEH-YSCMIDLYARAGLL---EKAEEML 526



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 171/366 (46%), Gaps = 39/366 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G  V   T    L  C ++  +  G ++H L       + + +S+ L+ +YA    +
Sbjct: 257 VRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDM 316

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F  +         WN+++S +A     E+A +++ +M   GV+P+  T    L 
Sbjct: 317 ECARMLFRML--ECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLA 374

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA +  ++ G+++H   V+ GF     + N+L+DMY+K G +  A+ VFD + + D+IS
Sbjct: 375 LCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMIS 434

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQV-HGWV 318
           Y SM+ GY   G    A  +F  MI +G  PD + + ++L+  S   L+  G ++ +  V
Sbjct: 435 YTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMV 494

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378
           +  G++  +   + +I +Y++ G L++A  + DH P                        
Sbjct: 495 ISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFP---------------------- 532

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
                    P    + +L+ AC   G++++GER    ++E    +    HY  + N+Y  
Sbjct: 533 ---------PTSTMWAALVGACHDRGNIEIGERAARKLLEMR--TENAGHYVLIANMYAA 581

Query: 439 AGLIDE 444
           AG  DE
Sbjct: 582 AGCWDE 587


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 257/438 (58%), Gaps = 10/438 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + +LL+ C QL  ++ G  +H  +  +  + +  I + LL +YA  G ++ A ++FD+M 
Sbjct: 77  YNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMP 136

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +R   +  W S+I+GYA+     DA+ L+ +M  +G EP++FT   ++K C  +     G
Sbjct: 137 HRDMVS--WTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCG 194

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            ++H    ++G   + FV ++LVDMYA+CG + +A  VFD++G K+ +S+N+++ GY   
Sbjct: 195 RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARK 254

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIA 330
           G   EA  +F  M   G+ P     S++L++ S    L  G  +H  +++   +    + 
Sbjct: 255 GEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVG 314

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVL 387
           N+L+ +Y+K G +  A  +FD + + DVVS NS++     H    EA   F++M R G+ 
Sbjct: 315 NTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIE 374

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ +TF+S+L+AC+H   +  G+  F +M  KY I P+V HYA +V+L GRAGL+D+A S
Sbjct: 375 PNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLDQAKS 433

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
            I E+M  E +  +WGALL A  +H N  MG  AAQ++FEL+P       LL  IY +AG
Sbjct: 434 FI-EEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAG 492

Query: 508 RLDDVERVERMLVDRGLE 525
           R +DV +V +++ D G++
Sbjct: 493 RWEDVAKVRKIMKDSGVK 510



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 7/285 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SL++ C  + +   G ++H          N  + S L+ +YA  G + EA  VFD++
Sbjct: 177 TLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL 236

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  WN+LI+GYA  GE E+A+AL+ +M+ EG  P +FT+  +L +C+ +G +  
Sbjct: 237 GCKNEVS--WNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQ 294

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H   ++      G+V N L+ MYAK G I  A  VFD++   D++S NSML GY  
Sbjct: 295 GKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQ 354

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HGL  EA   F  MI  G +P+ +   S+L   ++A LL  G    G + +  +E  +  
Sbjct: 355 HGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSH 414

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHAHSKDHE 373
             +++ +  + G LDQA    + MP +  V+ W +++ A SK H+
Sbjct: 415 YATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGA-SKMHK 458



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 185/335 (55%), Gaps = 22/335 (6%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           +EPD+  +  +LK C  LG ++ G+ VH   +   F  D  + N+L+ MYA+CG +  AR
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL- 308
            +FD + ++D++S+ SM+TGY  +    +A  +F  M+ +G +P+   +SS++     + 
Sbjct: 130 RLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA 189

Query: 309 --RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
               G Q+H    + G   ++ + +SL+ +Y++ G L +A  +FD +  K+ VSWN++I 
Sbjct: 190 SYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIA 249

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            +++     EAL  F +M+R+G  P   T+ +LLS+C+ +G ++ G+ L + +++    S
Sbjct: 250 GYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKS---S 306

Query: 424 PRVEHYA--CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
            ++  Y    ++++Y ++G I +A  +  + ++ +   V   ++L     HG   +G+ A
Sbjct: 307 QKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDV--VSCNSMLIGYAQHG---LGKEA 361

Query: 482 AQKL-----FELEPDNEHNFELLIKIYGNAGRLDD 511
           AQ+      F +EP N+  F  ++    +A  LD+
Sbjct: 362 AQQFDEMIRFGIEP-NDITFLSVLTACSHARLLDE 395


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 276/511 (54%), Gaps = 31/511 (6%)

Query: 20  CG-SKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQD 78
           CG  K+ R       ++  +S N I T  +Y       L  NQ A    +L         
Sbjct: 157 CGYVKDSRRVFDEISERNGVSWNAIITSLAY-------LERNQDALEMFRLM-------- 201

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
               +  G+   + TF+S+L    +LK  + G ++H       L  +  +++ L+ +YA 
Sbjct: 202 ----IDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAK 257

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G   +A  VF+Q+  +   +  WN++++ +A+      A+ L  QM+ +G  P+  TF 
Sbjct: 258 SGRSLQASNVFNQIGEKNIVS--WNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFT 315

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL ACA +G +R G+++H  A+R G   D FV NAL DMYAKCG +  AR VF +I  +
Sbjct: 316 NVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLR 374

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANASLLRIGAQVH 315
           D +SYN ++ GY       E+  +F  M + G   D V+   + S  AN + L+ G +VH
Sbjct: 375 DEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVH 434

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE-- 373
           G  +R+ +   L IAN+L+  Y K G++D A  +F  +P +D  SWNS+I  +    E  
Sbjct: 435 GLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELT 494

Query: 374 -ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
            A+  FE M+ DGV  D ++++++LSAC+H G V+ G++ F  M +   I P   HYACM
Sbjct: 495 IAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM-QVQNIKPTQMHYACM 553

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L GRAGLI+EA  +I E +  E    VWGALL AC +HG + +   AA+ LF+L+P +
Sbjct: 554 VDLLGRAGLIEEAVKLI-ESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQH 612

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
              + +L  +Y  AG+ D+  +V +++  RG
Sbjct: 613 SGYYSVLSNMYAEAGKWDEANQVRKLMKSRG 643



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 200/367 (54%), Gaps = 10/367 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +   TF  +L+ C    +V+ G ++H ++       +  + + LL  Y   G + + 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKAC 204
            +VFD+M  R   +  WNS+I  ++  G Y +AI L+ +M    G  P+  +   VL  C
Sbjct: 62  KRVFDEMLERDVVS--WNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVC 119

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           AGL     G ++H   V+ G      V NALVD+Y KCG +  +R VFD I  ++ +S+N
Sbjct: 120 AGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWN 179

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHGWVLRR 321
           +++T   +     +A ++FR MI  G  P+ V  SS   +L    L   G ++HG+ LR 
Sbjct: 180 AIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRF 239

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G+E D+ +AN+LI +Y+K G+  QA  +F+ + +K++VSWN+++   +++     A+   
Sbjct: 240 GLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLV 299

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM+ DG +P+ +TF ++L ACA +G ++ G+ + +  + + G S  +     + ++Y +
Sbjct: 300 RQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAI-RTGSSVDLFVSNALTDMYAK 358

Query: 439 AGLIDEA 445
            G ++ A
Sbjct: 359 CGCLNLA 365



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 206/372 (55%), Gaps = 10/372 (2%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E ++++G      +  S+L  C  L+    G ++H  +    L     + + L+ +Y   
Sbjct: 98  EMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKC 157

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G + ++ +VFD++S R   +  WN++I+  A L   +DA+ ++  M + GV+P+  TF  
Sbjct: 158 GYVKDSRRVFDEISERNGVS--WNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSS 215

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L     L L   G+++H  ++RFG   D FV NAL+DMYAK G  ++A  VF++IG K+
Sbjct: 216 MLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKN 275

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           ++S+N+M+  +  + L + A D+ R M  +G  P+ V  +++L   A    LR G ++H 
Sbjct: 276 IVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHA 335

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
             +R G   DL ++N+L  +Y+K G L+ A  +F  +  +D VS+N +I  +S+     E
Sbjct: 336 RAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSE 394

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           +L  F +M   G+  D ++++ ++SACA+L ++K G+ +  + V K+ +   +     ++
Sbjct: 395 SLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKH-LHTHLFIANALL 453

Query: 434 NLYGRAGLIDEA 445
           + Y + G ID A
Sbjct: 454 DFYIKCGRIDLA 465



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 155/288 (53%), Gaps = 16/288 (5%)

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV  D  TFP VLKACA    ++ G ++H    + GF  D FV N L+  Y  CG +   
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL-NGFDPDPVAISSILANASL 307
           + VFD +  +D++S+NS++  +  HG   EA  +F  M L +GF P+ V+I S+L   + 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 308 LR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L     G Q+H +V++ G++  + + N+L+ VY K G +  +  +FD + +++ VSWN+I
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 365 IHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I + +   ++ +AL  F  M   GV P+ +TF S+L     L     G+ +    + ++G
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSL-RFG 240

Query: 422 ISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALL 466
           +   +     ++++Y ++G   +A   ++ I EK     + V W A++
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEK-----NIVSWNAMV 283


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 156/442 (35%), Positives = 251/442 (56%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T   +L+    ++ +  G ++H R I T ++  N  +S+ L+RLY+  G I +  +VFD+
Sbjct: 112 TIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDE 171

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
             +R   +  W +LI  + + G Y  A+  + +M +  +  D  T   VL AC+ LG + 
Sbjct: 172 CPHRDLVS--WTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLN 229

Query: 212 VGEKVHLDAVR--FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +G+KVH   +R       D FV NAL+DMY KC D+  A  VFD +  K+++++N+M++G
Sbjct: 230 LGQKVH-SYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISG 288

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
             + G   EA D FR M   G  PD V +  +L   AN  +L IG  VH ++ R  +  D
Sbjct: 289 LAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILAD 348

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
             + N+L+ +Y+K G +D+A  +F+ M ++DV S+ ++I     H + + A   F +M R
Sbjct: 349 KFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFR 408

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ P+ +TF+ LL AC+H G V  G++ F  M +KY + P+ EHY CM++L GRAGL+ 
Sbjct: 409 VGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVK 468

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA   I+ KME        GALL AC +HGNV +GE+  QKL EL+PD E  + L+  +Y
Sbjct: 469 EAEE-IIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLY 527

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
            +  R  D  ++ + + ++ + 
Sbjct: 528 SSVHRWKDALKIRKTMKNKKMR 549



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 187/372 (50%), Gaps = 48/372 (12%)

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVK 247
           G+EPD FT P VLKA A +  IR G+++H  +++ G  GF+ +V N L+ +Y+ CG I  
Sbjct: 105 GLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHD 164

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI---LNGFDPDPVAISSILAN 304
            + VFD   ++DL+S+ +++  +   GL   A + F  M    L       V + S  +N
Sbjct: 165 VQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSN 224

Query: 305 ASLLRIGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
              L +G +VH ++     ++ D+ + N+L+ +Y K   L+ A  +FD MP K+VV+WN+
Sbjct: 225 LGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNA 284

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I       +  EAL  F  M+  GV PD +T V +L++CA+LG +++G+ + + M   +
Sbjct: 285 MISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNH 344

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-------------------------- 454
            ++ +    A ++++Y + G IDEA+  + E M+                          
Sbjct: 345 ILADKFVGNA-LLDMYAKCGSIDEAFR-VFESMKRRDVYSYTAMIFGLALHGEANWAFQV 402

Query: 455 --------FEASPVVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIY 503
                    E + V +  LL AC   G V  G+    ++   ++L P  EH +  +I + 
Sbjct: 403 FSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH-YGCMIDLL 461

Query: 504 GNAGRLDDVERV 515
           G AG + + E +
Sbjct: 462 GRAGLVKEAEEI 473



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 23/254 (9%)

Query: 70  QALDS--IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           +ALD+  ++QD       G+     T   +L +C  L  +E G  +H  +  N +  +K 
Sbjct: 297 EALDTFRMMQD------KGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKF 350

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + LL +YA  G IDEA +VF+ M  R  +++   ++I G A  GE   A  ++ +M  
Sbjct: 351 VGNALLDMYAKCGSIDEAFRVFESMKRRDVYSY--TAMIFGLALHGEANWAFQVFSEMFR 408

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD-AVRFGFGFDGFVLNALVDMYAKCGDIV 246
            G+EP++ TF  +L AC+  GL+  G+K     + ++           ++D+  + G + 
Sbjct: 409 VGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVK 468

Query: 247 KARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMI--LNGFDPDPVAISSILA 303
           +A  +  ++  + D+ +  ++L     HG      DI   ++  L   DPD      ++ 
Sbjct: 469 EAEEIIHKMEIRPDVFACGALLGACRIHG----NVDIGESVMQKLTELDPDEEGTYILMT 524

Query: 304 NASLLRIGAQVHGW 317
           N     + + VH W
Sbjct: 525 N-----LYSSVHRW 533


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 249/451 (55%), Gaps = 16/451 (3%)

Query: 83  VQNGITVQTETFASLLET--CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           +Q G+     +  SLL    C  L    HG  L   +  +L      + S L  LY+  G
Sbjct: 445 LQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLT-----VGSSLFTLYSKCG 499

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            ++E++++F  +  +      W S+ISG+ E G   +AI L+ +M ++G  PD+ T   V
Sbjct: 500 SLEESYKLFQGIPFKDNAC--WASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAV 557

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L  C+    +  G+++H   +R G      + +ALV+MY+KCG +  AR V+DR+   D 
Sbjct: 558 LTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDP 617

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGW 317
           +S +S+++GY  HGL+ + F +FR M+++GF  D  AISSIL  A+L     +GAQVH +
Sbjct: 618 VSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAY 677

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           + + G+  +  + +SL+ +YSK G +D  C  F  +   D+++W ++I +   H K +EA
Sbjct: 678 ITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEA 737

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  +  M+  G  PD +TFV +LSAC+H G V+      + MV+ YGI P   HY CMV+
Sbjct: 738 LQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVD 797

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
             GR+G + EA S I   M  +   +VWG LL AC +HG V +G+ AA+K  ELEP +  
Sbjct: 798 ALGRSGRLREAESFI-NNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAG 856

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +  L  I    G  D+VE   +++   G++
Sbjct: 857 AYISLSNILAEVGEWDEVEETRKLMKGTGVQ 887



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 196/388 (50%), Gaps = 16/388 (4%)

Query: 93  TFASLLETCYQLKAVEHG-IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T++S+L  C  L+ +  G +   R+I      ++  + + ++ LYA  G + EA +VF +
Sbjct: 253 TYSSVLAACASLEKLRFGKVVQARVIKCG--AEDVFVCTAIVDLYAKCGHMAEAMEVFSR 310

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + N +  +  W  ++SGY +  +   A+ ++ +M   GVE +  T   V+ AC    ++ 
Sbjct: 311 IPNPSVVS--WTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVC 368

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF---DRIGNKDLISYNSMLT 268
              +VH    + GF  D  V  AL+ MY+K GDI  +  VF   D I  ++++  N M+T
Sbjct: 369 EASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMIT 426

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
            +       +A  +F  M+  G   D  ++ S+L+    L +G QVHG+ L+ G+  DL 
Sbjct: 427 SFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLT 486

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + +SL  +YSK G L+++  LF  +P KD   W S+I   ++     EA+  F +M  DG
Sbjct: 487 VGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDG 546

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             PD  T  ++L+ C+   S+  G+ +    + + GI   ++  + +VN+Y + G +  A
Sbjct: 547 TSPDESTLAAVLTVCSSHPSLPRGKEIHGYTL-RAGIDKGMDLGSALVNMYSKCGSLKLA 605

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHG 473
              + +++  E  PV   +L+     HG
Sbjct: 606 -RQVYDRLP-ELDPVSCSSLISGYSQHG 631



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 174/344 (50%), Gaps = 15/344 (4%)

Query: 111 IKLHRLIPTNLLRK-----NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           ++  +++  +LLR+     +  ++  LL  Y+  G + +A ++FD +      +   N +
Sbjct: 64  LRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVS--CNIM 121

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           ISGY +   +E+++  + +M   G E ++ ++  V+ AC+ L      E V    ++ G+
Sbjct: 122 ISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGY 181

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
            F   V +AL+D+++K      A  VF    + ++  +N+++ G + +      FD+F  
Sbjct: 182 FFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHE 241

Query: 286 MILNGFDPDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           M +    PD    SS+LA  ASL  LR G  V   V++ G E D+ +  +++ +Y+K G 
Sbjct: 242 MCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGH 300

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSA 399
           + +A  +F  +P   VVSW  ++  ++K ++   AL  F++M   GV  ++ T  S++SA
Sbjct: 301 MAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISA 360

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           C     V    ++ +  V K G        A ++++Y ++G ID
Sbjct: 361 CGRPSMVCEASQVHA-WVFKSGFYLDSSVAAALISMYSKSGDID 403


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 261/448 (58%), Gaps = 11/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++ +T  + T +SLL     L     G +LH       +  +  I++ L+ +YA FG  +
Sbjct: 314 EHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSE 373

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  +F+ +  R   +  WN++I+   + G   +A  L  +M++ G  P+ FT   +L A
Sbjct: 374 KASAIFENIEVRNVVS--WNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPA 431

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ +  +++G+++H  ++R     D FV NAL+D+YAKCG +  AR +FDR   KD +SY
Sbjct: 432 CSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSY 490

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
           N+++ GY       E+  +F+ M L G + D V+    L+   N S  + G ++HG +++
Sbjct: 491 NTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVK 550

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
           R ++    +ANSL+ VY+K G LD A  +F+ + QKDV SWN++I     H +   A   
Sbjct: 551 RLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFEL 610

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+ M+ DG+  DH++++++LS C+H G V  G++ FS M+ +  I P+  HYACMV+L G
Sbjct: 611 FDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLG 669

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + E+ + I+  M F A+  VWGALL +C +HG++ +   AA+ LFEL+P+N   + 
Sbjct: 670 RAGQLSES-AEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYT 728

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  +Y  +G  ++   V++++  R ++
Sbjct: 729 LLRNMYSESGMWNEANGVKKLMKSRKVQ 756



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 231/431 (53%), Gaps = 22/431 (5%)

Query: 73  DSIIQDLESSV----QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           + +++D + +V    ++G+ V   +  S+L  C   +    G+ +H L+    L     +
Sbjct: 198 NGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNL 257

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            + L+ +Y  FG ++ +  VF+ M  +   +  WNS I  +A  G +ED + ++  M E 
Sbjct: 258 GNALVDMYGKFGDLESSMHVFNGMQEKNEVS--WNSAIGCFAHAGFHEDVLEMFRLMSEH 315

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            V P   T   +L A   LG   +G+++H  ++R     D F+ N L+DMYAK G   KA
Sbjct: 316 DVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKA 375

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL- 307
             +F+ I  ++++S+N+M+     +G   EAF +   M  NG  P+   + ++L   S  
Sbjct: 376 SAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRV 435

Query: 308 --LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             +++G Q+H W +RR +  DL ++N+LI VY+K G+L+ A ++FD   +KD VS+N++I
Sbjct: 436 ASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLI 494

Query: 366 HAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
             +S+     E+L  F+QM   G+  D ++F+  LSAC++L + K G+ +  V+V++   
Sbjct: 495 VGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLD 554

Query: 423 S-PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           S P + +   ++++Y + G++D A S I  ++  +     W  ++    +HG +      
Sbjct: 555 SHPFLAN--SLLDVYTKGGMLDTA-SKIFNRIT-QKDVASWNTMILGYGMHGQI----DV 606

Query: 482 AQKLFELEPDN 492
           A +LF+L  D+
Sbjct: 607 AFELFDLMKDD 617



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 172/349 (49%), Gaps = 13/349 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++  LL  YA    I  AH +      R   AF WNSL    A      +A+ +Y +M  
Sbjct: 49  LAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRALASAALPCEALRVYNRMVR 108

Query: 188 EGVEPDQFTFPRVLKACAGLGLIR---VGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCG 243
            GV PD  TFP  L A A +        G ++H  A+R G    D F  N LV  YA CG
Sbjct: 109 SGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCG 168

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
               AR VFD +  +D++S+NS+++  + +G+L +A     GM+ +G   +  ++ SIL 
Sbjct: 169 RAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILP 228

Query: 304 NASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
                R    G  VHG VL+ G+   + + N+L+ +Y K G L+ +  +F+ M +K+ VS
Sbjct: 229 ACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVS 288

Query: 361 WNSII--HAHSKDHEALI-YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WNS I   AH+  HE ++  F  M    V P  +T  SLL A   LG   +G+ L    +
Sbjct: 289 WNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSI 348

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +  +   +     ++++Y + G  ++A S I E +E   + V W A++
Sbjct: 349 RR-AVESDIFIANTLMDMYAKFGCSEKA-SAIFENIEVR-NVVSWNAMI 394


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 256/429 (59%), Gaps = 9/429 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +L+ C + K +  G   H  I    L+ +   S+ L+ +Y+  G +D A QVFD+M +R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN++I    + GE  +A+ L  QM+ EG    +FT   VL ACA    +   + +
Sbjct: 130 LVS--WNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLL 187

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  A++     + FV  AL+D+YAKCG +  A  VF+ + ++ +++++SM  GY+ + + 
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSL 333
            +A  +FR     G   D   +SS++   + L     G Q++  + + G   ++ +A+SL
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSL 307

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           I +Y+K G ++++  +F  + +++VV WN++I     H++  E +I FE+M++ G+ P+ 
Sbjct: 308 IDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPND 367

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFVS+LSAC H+G V+ G++ F +M +++ ++P V HY+CMV+   RAG I EAY +I 
Sbjct: 368 VTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLI- 426

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
            K+ F AS  +WG+LL +C  HGN+ + E AA+KLF++EP N  N+ LL  +Y   G+ D
Sbjct: 427 SKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWD 486

Query: 511 DVERVERML 519
           +V ++ ++L
Sbjct: 487 EVAKMRKLL 495



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 179/384 (46%), Gaps = 45/384 (11%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +ALD ++Q      + G      T +S+L  C    A+     LH       +  N  ++
Sbjct: 148 EALDLLLQ----MQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVA 203

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + LL +YA  GL+ +A  VF+ M +R+     W+S+ +GY +   YE A+AL+ +  E G
Sbjct: 204 TALLDVYAKCGLMKDAVCVFESMPDRSVVT--WSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           ++ DQF    V+ ACAGL  +  G++++    + GF  + FV ++L+DMYAKCG I ++ 
Sbjct: 262 LKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESY 321

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309
            VF  +  ++++ +N+M++G   H   +E   +F  M   G  P+ V   S+L+      
Sbjct: 322 KVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS------ 375

Query: 310 IGAQVHGWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
             A  H  ++R+G ++ DL                       +H    +V  ++ ++   
Sbjct: 376 --ACGHMGLVRKGQKYFDLMTK--------------------EHHLAPNVFHYSCMVDTL 413

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE----RLFSVMVEKYGISP 424
           S+  +    ++ + +         + SLL++C   G++++ E    +LF +     G   
Sbjct: 414 SRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSG--- 470

Query: 425 RVEHYACMVNLYGRAGLIDEAYSM 448
              +Y  + N+Y   G  DE   M
Sbjct: 471 ---NYLLLSNMYAANGKWDEVAKM 491


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 251/450 (55%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           +  G+ +  E  F S+   C  L   E+G +LH +     L ++      L  +YA  GL
Sbjct: 257 LHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGL 316

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +  A  VF Q+      A  WN++I+G+A  G+ ++AIA + QM  +G+ PD+ T   +L
Sbjct: 317 LSCARVVFYQIGRPDLVA--WNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLL 374

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDL 260
            AC     +  G +VH    + G   D  V N L+ MYAKC ++  A   F+ +  N DL
Sbjct: 375 CACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADL 434

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           +S+N++LT  + H    E F + + M ++   PD + ++++L   A    + IG QVH +
Sbjct: 435 VSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCY 494

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEA 374
            L+ G+  D  + N LI +Y+K G L  A  +FD M   DVVSW+S+I  +++     EA
Sbjct: 495 ALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEA 554

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F+ M R  V P+H+TFV +L+AC+H+G V+ G +L+  M +++GI+P  EH +CMV+
Sbjct: 555 LKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVD 614

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L  RAG ++EA   I  +M F+   VVW  LL AC  HGNV +G+ AA+ + +++P N  
Sbjct: 615 LLARAGCLNEAEGFI-HQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSA 673

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
              LL  IY + G  +DV R+  ++  RG+
Sbjct: 674 AHVLLCNIYASKGNWEDVARLRSLMKQRGV 703



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 212/396 (53%), Gaps = 11/396 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G  +   T+A L+  C  L+++EHG K+H  +  +    +  + + +L +Y     + 
Sbjct: 56  KTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLK 115

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VFD M  R   +  W S+I+GY++ G+  +A+  YFQM + GV PDQFTF  ++KA
Sbjct: 116 DAQKVFDAMPERNVVS--WTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKA 173

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ LG I +G ++H   ++  FG      NAL+ MY K   I+ A  VF R+  +DLIS+
Sbjct: 174 CSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISW 233

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL-ANASLLR--IGAQVHGWVL 319
            SM+ G+   G  +EA   F+ M+  G + P+     S+  A +SLL+   G Q+HG  +
Sbjct: 234 GSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSI 293

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKD-HEALI 376
           + G+  D+    SL  +Y+K G L  A  +F  + + D+V+WN+II   A+  D  EA+ 
Sbjct: 294 KFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIA 353

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           +F QM   G++PD +T  SLL AC     +  G ++    + K G+   V     ++ +Y
Sbjct: 354 FFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHG-YINKMGLDLDVPVCNTLLTMY 412

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            +   + +A     E+M   A  V W A+L AC  H
Sbjct: 413 AKCSELRDAI-FFFEEMRCNADLVSWNAILTACMRH 447



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 221/420 (52%), Gaps = 15/420 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q+G+     TF S+++ C  L  +  G +LH  +  +    +    + L+ +Y    LI
Sbjct: 156 LQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLI 215

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVL 201
            +A  VF +M+ R   +  W S+I+G+++LG   +A+  + +M  +GV  P++F F  V 
Sbjct: 216 IDALDVFSRMATRDLIS--WGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVF 273

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC+ L     G ++H  +++FG G D F   +L DMYAKCG +  AR VF +IG  DL+
Sbjct: 274 SACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLV 333

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWV 318
           ++N+++ G+ + G   EA   F  M   G  PD + + S+L    + S L  G QVHG++
Sbjct: 334 AWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYI 393

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHA---HSKDHEA 374
            + G++ D+ + N+L+ +Y+K  +L  A + F+ M    D+VSWN+I+ A   H +  E 
Sbjct: 394 NKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEV 453

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
               + M      PD++T  ++L A A   S+++G ++    + K G++        +++
Sbjct: 454 FRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYAL-KTGLNCDTSVTNGLID 512

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPDN 492
           LY + G +  A+  I + M      V W +L+  YA + +G   +      +  +++P++
Sbjct: 513 LYAKCGSLKTAHK-IFDSM-INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 570


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 243/420 (57%), Gaps = 9/420 (2%)

Query: 112  KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
            ++H     + + +N  +++KL+  Y+ +  +D+A+ +FD M  R + +  W+ ++ G+A+
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVS--WSVMVGGFAK 813

Query: 172  LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            +G+Y +    + ++   G  PD +T P V++AC  L  +++G  +H    +FG   D FV
Sbjct: 814  VGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 873

Query: 232  LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
              ALVDMY KC +I  AR +FD++  +DL+++  M+ GY   G   E+  +F  M   G 
Sbjct: 874  CAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV 933

Query: 292  DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             PD VA+ +++   A    +     +  ++ R+  + D+ +  ++I +++K G ++ A  
Sbjct: 934  VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESARE 993

Query: 349  LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
            +FD M +K+V+SW+++I A   H +  +AL  F  M R G+LP+ +T VSLL AC+H G 
Sbjct: 994  IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGL 1053

Query: 406  VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
            V+ G R FS M E Y +   V+HY C+V+L GRAG +DEA  +I   M  E    +WGA 
Sbjct: 1054 VEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXS-MTXEKDEGLWGAF 1112

Query: 466  LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L AC  H +V + E AA  L EL+P N  ++ LL  IY NAGR +DV ++  ++  R L+
Sbjct: 1113 LGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLK 1172



 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 250/440 (56%), Gaps = 16/440 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + S L  C  L  V    ++H     + + +N  +++KL+  Y+ +  +D+A+ +FD M 
Sbjct: 65  YISALVNCRNLTQVR---QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMC 121

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R + +  W+ ++ G+A++G+Y +    + ++   G  PD +T P V++AC  L  +++G
Sbjct: 122 VRDSVS--WSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG 179

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H    +FG   D FV  ALVDMY KC +I  AR +FD++  +DL+++  M+ GY   
Sbjct: 180 RLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAEC 239

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-----VHGWVLRRGVEWDLC 328
           G   E+  +F  M   G  PD VA+ +++   +  ++GA      +  ++ R+  + D+ 
Sbjct: 240 GKANESLVLFEKMREEGVVPDKVAMVTVVFACA--KLGAMHKARIIDDYIQRKKFQLDVI 297

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +  ++I +Y+K G ++ A  +FD M +K+V+SW+++I A   H +  +AL  F  M   G
Sbjct: 298 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSG 357

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +LPD +T  SLL AC+H G V+ G R FS M E Y +   V+HY C+V+L GRAG +DEA
Sbjct: 358 MLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEA 417

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I + M  E    +WGA L AC  H +V + E AA  L EL+  N  ++ LL  IY N
Sbjct: 418 LKLI-KSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYAN 476

Query: 506 AGRLDDVERVERMLVDRGLE 525
           AGR +DV ++  ++  R L+
Sbjct: 477 AGRWEDVAKIRDLMSQRRLK 496



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 167/333 (50%), Gaps = 21/333 (6%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G      T   ++  C  LK ++ G  +H ++    L  +  + + L+ +Y     I
Sbjct: 152 IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREI 211

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  +FD+M  R      W  +I GYAE G+  +++ L+ +M EEGV PD+     V+ 
Sbjct: 212 EDARFLFDKMQERDLVT--WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 269

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +     +     R  F  D  +  A++DMYAKCG +  AR +FDR+  K++IS
Sbjct: 270 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 329

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV----- 314
           +++M+  Y +HG   +A D+F  M+ +G  PD + ++S+L   ++A L+  G +      
Sbjct: 330 WSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMW 389

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHE 373
             + +R  V+   C+ + L     + G+LD+A  L   M  +KD   W + + A  + H+
Sbjct: 390 EDYSVRTDVKHYTCVVDLL----GRAGRLDEALKLIKSMTIEKDEGLWGAFLGA-CRTHK 444

Query: 374 ALIYFEQ-----MERDGVLPDHLTFVSLLSACA 401
            ++  E+     +E     P H   +S + A A
Sbjct: 445 DVVLAEKAATSLLELQSQNPGHYVLLSNIYANA 477



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 10/178 (5%)

Query: 294 DPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
           +P    S L N   L    QVH      G+  ++ +AN LI  YS    LD A  LFD M
Sbjct: 61  NPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGM 120

Query: 354 PQKDVVSWNSIIHAHSK--DH-EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
             +D VSW+ ++   +K  D+      F ++ R G  PD+ T   ++ AC  L ++++G 
Sbjct: 121 CVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG- 179

Query: 411 RLFSVMVEKYGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           RL   +V K+G+   ++H+ C  +V++Y +   I++A   + +KM+ E   V W  ++
Sbjct: 180 RLIHHIVYKFGLD--LDHFVCAALVDMYVKCREIEDA-RFLFDKMQ-ERDLVTWTVMI 233



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            E   + G+        +++  C +L A+     +   I     + +  + + ++ +YA 
Sbjct: 249 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 308

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G ++ A ++FD+M  +   +  W+++I+ Y   G+   A+ L+  M   G+ PD+ T  
Sbjct: 309 CGCVESAREIFDRMEEKNVIS--WSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLA 366

Query: 199 RVLKACAGLGLIRVG 213
            +L AC+  GL+  G
Sbjct: 367 SLLYACSHAGLVEEG 381



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 84   QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            + G+        +++  C +L A+     +   I     + +  + + ++ ++A  G ++
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989

Query: 144  EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
             A ++FD+M  +   +  W+++I+ Y   G+   A+ L+  M   G+ P++ T   +L A
Sbjct: 990  SAREIFDRMEEKNVIS--WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 1047

Query: 204  CAGLGLIRVG 213
            C+  GL+  G
Sbjct: 1048 CSHAGLVEEG 1057


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 256/448 (57%), Gaps = 9/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI   + TFAS L    +L +++H  ++H  I  + +  +  + S L+ +Y     +
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A ++  Q S+         ++ISGY   G+ ++A+  +  + +E ++P   TF  +  
Sbjct: 312 EMAQKILCQSSSFDTVVC--TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A AGL  + +G+++H   ++        V +A++DMYAKCG +  A  VF+RI  KD I 
Sbjct: 370 AFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC 429

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NSM+T    +G   EA ++FR M + G   D V+IS  L   AN   L  G ++HG ++
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  DL   +SLI +Y+K G L+ +  +FD M +++ VSWNSII A   H    E L 
Sbjct: 490 KGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLA 549

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M R+G+ PDH+TF+ ++SAC H G V  G R + +M E+YGI  R+EHYAC+ +++
Sbjct: 550 LFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMF 609

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +DEA+  I   M F     VWG LL AC++HGNV + E A++ LF+L+P N   +
Sbjct: 610 GRAGRLDEAFETI-NSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYY 668

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL  +   AG+   V +V  ++ +RG+
Sbjct: 669 VLLANVQAGAGKWRKVLKVRSIMKERGV 696



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 210/394 (53%), Gaps = 11/394 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++    TF  +++ C  LK+V+ G  +H  +    L+++  + S L++LYA  G + +A
Sbjct: 53  GVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDA 112

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD +  + +    WN +++GY + G+  +AI ++ +M    ++P+  TF  VL  CA
Sbjct: 113 QYLFDNIPQKDSVL--WNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCA 170

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              ++ +G ++H  AV  G   D  V N L+ MY+KC  +  AR +FD     DL+S+N 
Sbjct: 171 SEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNG 230

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           +++GY+ +GL+ EA  +FRGMI  G  PD +  +S L   +    L+   ++HG+++R  
Sbjct: 231 IISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHA 290

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFE 379
           V  D+ + ++LI +Y K   ++ A  +       D V   ++I  +    K+ EAL  F 
Sbjct: 291 VVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFR 350

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + ++ + P  +TF S+  A A L ++ +G+ L   ++ K  +  +    + ++++Y + 
Sbjct: 351 WLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSII-KTKLDEKCHVGSAILDMYAKC 409

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G +D A  +     E +A  + W +++ +C  +G
Sbjct: 410 GRLDLACRVFNRITEKDA--ICWNSMITSCSQNG 441



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 175/328 (53%), Gaps = 9/328 (2%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G + +A  +F  +  +      WN +I G+  +G++  A+  Y +M   GV PD+
Sbjct: 1   MYVRTGSLKDAKNLFYTL--QLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDK 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           +TFP V+KAC GL  +++G+ VH      G   D FV ++L+ +YA+ G +  A+ +FD 
Sbjct: 59  YTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           I  KD + +N ML GY+ +G    A  IF  M  +   P+ V  + +L   A+ ++L +G
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
            Q+HG  +  G+E D  +AN+L+ +YSK   L  A  LFD  PQ D+VSWN II  + ++
Sbjct: 179 TQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               EA   F  M   G+ PD +TF S L     L S+K  + +   ++ ++ +   V  
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYII-RHAVVLDVFL 297

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFE 456
            + ++++Y +   ++ A  ++ +   F+
Sbjct: 298 KSALIDIYFKCRDVEMAQKILCQSSSFD 325


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 251/446 (56%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  SL   C +   +  G ++H LI    L+ N  + + LL +Y   G +   
Sbjct: 312 GIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTG 371

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F +  N       W+++IS  A+ G    A+ L+++ + E    D      VL+AC+
Sbjct: 372 LKIFRRSQNHNLIM--WSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACS 429

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L L   G ++H  A + GF  D FV +ALVD+YAKC D+  ++ VF R+  KDL+S+N+
Sbjct: 430 SLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNA 489

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           +++GY       EA   FR M L    P+ V I+ IL   A+ S++ +  +VHG+++R+G
Sbjct: 490 LISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQG 549

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +   + ++NSLI  Y+K G ++ + + F+ MP+++ VSWNSII     HS+  E ++ F+
Sbjct: 550 LGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFD 609

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PDH+TF ++LSAC+H G V  G + F  MVE + + P++E Y CMV+L GRA
Sbjct: 610 KMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRA 669

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +++AY +I+  M       +WG+LL +C  HG+  + E  A  +F+L P +     LL
Sbjct: 670 GHLNQAYDLIM-AMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLL 728

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y N G+  +  +V   + D GL+
Sbjct: 729 ANLYENLGKGREGSKVRSEIKDMGLK 754



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 215/437 (49%), Gaps = 15/437 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI        S + +C  L+++ HG ++H ++  + L   + + S L+ +Y   G I  A
Sbjct: 206 GIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNA 265

Query: 146 HQVFDQMSNRTAF---AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             +F+ + ++ +    A  WN +ISGY   G +  A+ L+ +M   G++PD  T   +  
Sbjct: 266 ENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFS 325

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C+    I  G+++H    +FG   +  V  AL+DMY KCGD+     +F R  N +LI 
Sbjct: 326 LCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIM 385

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVL 319
           ++++++     G   +A ++F    +     D   + ++L   S L +   G Q+HG   
Sbjct: 386 WSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLAT 445

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALI 376
           + G   D+ + ++L+ +Y+K   +  +  +F  + QKD+VSWN++I  +++D    EAL 
Sbjct: 446 KMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALK 505

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F  M+ + + P+ +T   +LS CAHL  + + + +   ++ + G+   V     ++  Y
Sbjct: 506 AFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQ-GLGSTVLVSNSLIATY 564

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPDNEH 494
            + G I+ +     EKM  E + V W +++    +H           K+    ++PD+  
Sbjct: 565 AKCGDINSSL-YTFEKMP-ERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHV- 621

Query: 495 NFELLIKIYGNAGRLDD 511
            F  ++    +AGR+D+
Sbjct: 622 TFTAILSACSHAGRVDE 638



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 178/324 (54%), Gaps = 16/324 (4%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT-FPRVLKACAGLGLIRVGEKVHLDAV 221
           N++I  Y E G ++DAI +Y +M ++GV+ ++F  FP ++KA  GL  +  G ++H   +
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G   D  V+N+L+ MY KCG +  A  +F+++   DL+S+N+M++G+        +  
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 282 IFRGMILN-GFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            FR M+   G  P+ VA +SSIL+ +SL  L  G ++HG V++ G++ +  + +SLI +Y
Sbjct: 197 FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMY 256

Query: 338 SKDGKLDQACWLFDHMPQKD-----VVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD 389
            K G +  A  +F+ +  KD      V WN +I  +  +    +AL+ F +M   G+ PD
Sbjct: 257 MKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPD 316

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           + T VSL S C+    +  G+++   ++ K+G+   +     ++++Y + G  D    + 
Sbjct: 317 YSTMVSLFSLCSESLDIAFGKQIHG-LIFKFGLKNNIRVETALLDMYLKCG--DMGTGLK 373

Query: 450 VEKMEFEASPVVWGALLYACYLHG 473
           + +     + ++W A++  C   G
Sbjct: 374 IFRRSQNHNLIMWSAVISNCAQSG 397



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/449 (23%), Positives = 214/449 (47%), Gaps = 23/449 (5%)

Query: 36  QQISRNRITTFSSYPKSSPTPLLT-----NQKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           Q+ + N I  +SS P S+           N      T+    D  I      + +G+ V+
Sbjct: 48  QKFNYNPIQKWSSKPLSTKIQTFVSVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVKVE 107

Query: 91  T-ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
               F  L++    L  V  G ++H  +    +  +  + + LL +Y   G++++A Q+F
Sbjct: 108 EFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMF 167

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLG 208
           ++M      +  WN++ISG+ +  +Y  ++  +  M  E G+ P++      + +C+ L 
Sbjct: 168 EKMPEVDLVS--WNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQ 225

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS-----Y 263
            +  G ++H   V+ G   + +++++L++MY KCG I  A  +F+ I +KD +      +
Sbjct: 226 SLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIW 285

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLR 320
           N M++GY+ +G   +A  +F  M++ G  PD    V++ S+ + +  +  G Q+HG + +
Sbjct: 286 NVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFK 345

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G++ ++ +  +L+ +Y K G +     +F      +++ W+++I   ++     +AL  
Sbjct: 346 FGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALEL 405

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F + + +  L D    V++L AC+ L     G ++   +  K G    V   + +V+LY 
Sbjct: 406 FYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHG-LATKMGFVSDVFVGSALVDLYA 464

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +    D  YS  V     +   V W AL+
Sbjct: 465 KCR--DMGYSKKVFLRLSQKDLVSWNALI 491


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 253/444 (56%), Gaps = 10/444 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+ S L  C  L+ ++ GI++   I      +N  + S L+  ++  G +++A
Sbjct: 126 GVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDA 185

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F  M  R   +  WN++I GYA  G  +D+  ++  M   G+ PD +T   VL+A A
Sbjct: 186 SYLFGTMMERDVVS--WNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASA 243

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G + +  ++H    + G+G    V   L++ YAK G +  A+ +   +  KDL S  +
Sbjct: 244 EGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTA 303

Query: 266 MLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++TGY H G+  V+A D+F+ M       D V + S+L   AN +   +G Q+H + L+ 
Sbjct: 304 LITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKY 363

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
              +D+ + N+LI +Y+K G+++ A   FD M +K+V+SW S+I  ++K    H A+  +
Sbjct: 364 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLY 423

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++ME  G  P+ +TF+SLL AC+H G    G   F+ MV KY I PR EHY+CMV+L+ R
Sbjct: 424 KKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFAR 483

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            GL++EAY+++  K++ + +  +WGA+L A  ++G + +G+ AA  LF ++P+N  N+ +
Sbjct: 484 QGLLEEAYNLLC-KIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVV 542

Query: 499 LIKIYGNAGRLDDVERVERMLVDR 522
           L  IY  AG  DD  ++ +++ +R
Sbjct: 543 LASIYSAAGLWDDAWKIRKLMEER 566



 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 229/442 (51%), Gaps = 10/442 (2%)

Query: 83   VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
            +Q G  +   TFAS L  C   + +     +H LI          + + L+ +Y   G++
Sbjct: 1141 LQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMM 1200

Query: 143  DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             EA +V   M         WN+LI G+AE  E  +A+  Y  + E+G+  +  T   VL 
Sbjct: 1201 MEAKKVLQTMPQPDRVT--WNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLG 1258

Query: 203  ACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC+    L++ G  +H   V  GF  D +V N+L+ MYAKCGD+  +  +FD +GNK  I
Sbjct: 1259 ACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPI 1318

Query: 262  SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWV 318
            ++N+M+    HHG   EA  IF  M   G + D  + S  LA   N ++L  G Q+HG V
Sbjct: 1319 TWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLV 1378

Query: 319  LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            ++ G E DL + N+ + +Y K G++     +      +  +SWN +I A   H    +A 
Sbjct: 1379 IKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKAR 1438

Query: 376  IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
              F +M + G  PDH+TFVSLLSAC H G V  G   +  M  ++G+ P +EH  C+++L
Sbjct: 1439 ETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDL 1498

Query: 436  YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             GR+G +  A   I E M    + + W +LL AC +HGN+ +    A+ L EL+P ++  
Sbjct: 1499 LGRSGRLSHAEGFIKE-MPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA 1557

Query: 496  FELLIKIYGNAGRLDDVERVER 517
            + L   +   +G+ +DVE + +
Sbjct: 1558 YVLYSNVCATSGKWEDVENLRK 1579



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 214/417 (51%), Gaps = 15/417 (3%)

Query: 67  TKLQA---LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLR 123
           +K+Q+   L  + + L+    N   +    +  +L+ C   KA + G  +H  + TN   
Sbjct: 3   SKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFG 62

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
            +  +++KL+  Y   G +  A  VFD M  R+  +  W +++SGY++ G +E A  L+ 
Sbjct: 63  SDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVS--WTAMVSGYSQNGRFEKAFVLFS 120

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M   GV+ +QFT+   L+AC  L  + +G +V     +  F  + FV +ALVD ++KCG
Sbjct: 121 DMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCG 180

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            +  A  +F  +  +D++S+N+M+ GY   G   ++F +FR M+  G  PD   + S+L 
Sbjct: 181 KMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLR 240

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             A    L I  Q+HG + + G      +   LI  Y+K+G L  A  L   M +KD+ S
Sbjct: 241 ASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFS 300

Query: 361 WNSIIHAHSKDH----EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
             ++I  ++ +     +AL  F++M +  +  D +   S+L+ CA+L S  +G ++ +  
Sbjct: 301 STALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFA 360

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           + KY  S  V     ++++Y ++G I++A     ++ME E + + W +L+     HG
Sbjct: 361 L-KYQPSYDVAMGNALIDMYAKSGEIEDA-KRAFDEME-EKNVISWTSLISGYAKHG 414



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 198/362 (54%), Gaps = 15/362 (4%)

Query: 125  NKGI--SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
            N GI  ++ L+ +Y+ FG I+ A  VFD+M +R   +  W++++SGY  +G YE+A+ L+
Sbjct: 776  NLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS--WSTMLSGYVRVGLYEEAVGLF 833

Query: 183  FQMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
             QM   GVEP+ F    ++ AC+  G +   G +VH   V+ G   D +V  ALV  Y  
Sbjct: 834  CQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGS 893

Query: 242  CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
             G +  A+ +F+ + + +++S+ S++ GY   G   E  ++++ M   G   +    +++
Sbjct: 894  IGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATV 953

Query: 302  LANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
             ++  LL    +G QV G +++ G E  + +ANSLI ++S    +++AC++FDHM + D+
Sbjct: 954  TSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDI 1013

Query: 359  VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            +SWN++I A   H    E+L  F  M       +  T  SLLS C+ + ++K G  +  +
Sbjct: 1014 ISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGL 1073

Query: 416  MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            +V K G+   V     ++ LY  AG  ++A  ++ + M  E   + W +++ ACY+    
Sbjct: 1074 VV-KLGLDSNVCICNTLLTLYSEAGRSEDA-ELVFQAMT-ERDLISWNSMM-ACYVQDGK 1129

Query: 476  CM 477
            C+
Sbjct: 1130 CL 1131



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 209/390 (53%), Gaps = 14/390 (3%)

Query: 86   GITVQTETF--ASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
            G+ V+   F  ASL+  C +     + G ++H  +    +  +  + + L+  Y + GL+
Sbjct: 838  GLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 897

Query: 143  DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
              A ++F++M +    +  W SL+ GY++ G   + + +Y +M +EGV  +Q TF  V  
Sbjct: 898  YNAQKLFEEMPDHNVVS--WTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS 955

Query: 203  ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            +C  L    +G +V    +++GF     V N+L+ M++    + +A  VFD +   D+IS
Sbjct: 956  SCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIIS 1015

Query: 263  YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVL 319
            +N+M++ Y HHGL  E+   F  M     + +   +SS+L+  S    L+ G  +HG V+
Sbjct: 1016 WNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV 1075

Query: 320  RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALI 376
            + G++ ++CI N+L+ +YS+ G+ + A  +F  M ++D++SWNS++  + +D    + L 
Sbjct: 1076 KLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLK 1135

Query: 377  YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
               ++ + G + +H+TF S L+AC++   + +  ++   ++   G    +     +V +Y
Sbjct: 1136 ILAELLQMGKVMNHVTFASALAACSNPECL-IESKIVHALIIVAGFHDFLIVGNALVTMY 1194

Query: 437  GRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G+ G++ EA   +++ M  +   V W AL+
Sbjct: 1195 GKLGMMMEA-KKVLQTMP-QPDRVTWNALI 1222



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 199/410 (48%), Gaps = 13/410 (3%)

Query: 110  GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
            G  +H L+    L  N  I + LL LY+  G  ++A  VF  M+ R   +  WNS+++ Y
Sbjct: 1067 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLIS--WNSMMACY 1124

Query: 170  AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
             + G+  D + +  ++ + G   +  TF   L AC+    +   + VH   +  GF    
Sbjct: 1125 VQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFL 1184

Query: 230  FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
             V NALV MY K G +++A+ V   +   D +++N+++ G+  +    EA   ++ +   
Sbjct: 1185 IVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREK 1244

Query: 290  GFDPDPVAISSILANAS----LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G   + + + S+L   S    LL+ G  +H  ++  G E D  + NSLI +Y+K G L+ 
Sbjct: 1245 GIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNS 1304

Query: 346  ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
            + ++FD +  K  ++WN+++ A   H    EAL  F +M   GV  D  +F   L+A A+
Sbjct: 1305 SNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATAN 1364

Query: 403  LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            L  ++ G++L  +++ K G    +      +++YG+ G + +   M+ + +    S + W
Sbjct: 1365 LAVLEEGQQLHGLVI-KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPI--NRSRLSW 1421

Query: 463  GALLYACYLHGNVCMGETAAQKLFELEPDNEH-NFELLIKIYGNAGRLDD 511
              L+ A   HG          ++ +L P  +H  F  L+    + G +D+
Sbjct: 1422 NILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDE 1471



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 149/291 (51%), Gaps = 13/291 (4%)

Query: 193  DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
            +   FP  LK  + +     G+ +H   +        F  N L++MY+K G+I  AR VF
Sbjct: 745  NAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVF 802

Query: 253  DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----LL 308
            D + +++  S+++ML+GY+  GL  EA  +F  M   G +P+   ++S++   S    + 
Sbjct: 803  DEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMA 862

Query: 309  RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
              G QVHG+V++ G+  D+ +  +L+  Y   G +  A  LF+ MP  +VVSW S++  +
Sbjct: 863  DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGY 922

Query: 369  SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            S      E L  +++M ++GV  +  TF ++ S+C  L    +G ++   +++ YG    
Sbjct: 923  SDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQ-YGFEDS 981

Query: 426  VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
            V     +++++     ++EA   + + M  E   + W A++ A Y H  +C
Sbjct: 982  VSVANSLISMFSSFSSVEEA-CYVFDHMN-ECDIISWNAMISA-YAHHGLC 1029


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 260/478 (54%), Gaps = 40/478 (8%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      T+  L + C +L  +  G ++   +       +  +S+ ++ L  + G +D 
Sbjct: 101 DGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDG 160

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++FD+   R   +  WNS+I+GY   G   +A+  Y +M+ EG++PD+ T   V+ +C
Sbjct: 161 ARKMFDKSCVRDLVS--WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSC 218

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L  + +G + H      G      + NAL+DMY KCG++  AR +FD + NK ++S+ 
Sbjct: 219 AQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWT 278

Query: 265 SMLTGYIHHGLLVEAFDIFRGM----------ILNGF---------------------DP 293
           +M+ GY   GLL  A+ +F  M          ++ G+                     +P
Sbjct: 279 TMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINP 338

Query: 294 DPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D V + S L+  S    L +G  +H ++ +  +  ++ +  +LI +Y+K GK+ +A  +F
Sbjct: 339 DEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVF 398

Query: 351 DHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
             +P ++ ++W +II     H   H A+ YF +M  + V+PD +TF+ LLSAC H G V+
Sbjct: 399 QELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVE 458

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G + FS M  K+ +SP+++HY+CMV+L GRAGL++EA  +I + M  EA  VVWGAL +
Sbjct: 459 EGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI-KSMPIEADAVVWGALFF 517

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AC +HGNV MGE AA KL +++P +   + LL  +YG A    +  +  +++  RG+E
Sbjct: 518 ACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVE 575



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 212/426 (49%), Gaps = 58/426 (13%)

Query: 94  FASLLETC---YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           F SLLE C    QLK ++  + L  LI           SS+L+   A     D  +    
Sbjct: 9   FLSLLEKCKSISQLKQIQSQMVLTGLIEDGF------ASSRLIAFCAISEWRDLDYCTNI 62

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGL 209
             + R    F WN  I G+ +     +A+ LY + ++ +G +PD +T+P + KACA L L
Sbjct: 63  LFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSL 122

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           IR+G ++    +  GF  D FV NA++ +   CGD+  AR +FD+   +DL+S+NSM+ G
Sbjct: 123 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 182

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWD 326
           Y+  G   EA + +R M + G  PD V +  ++++ + L    +G + H ++   G++  
Sbjct: 183 YVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT 242

Query: 327 LCIANSL-------------------------------IVVYSKDGKLDQACWLFDHMPQ 355
           + +AN+L                               +V Y++ G LD A  LFD MP 
Sbjct: 243 VPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPD 302

Query: 356 KDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           KDVV WN++I  +   ++  EAL  F +M+   + PD +T VS LSAC+ LG++ VG  +
Sbjct: 303 KDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWI 362

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYA 468
               +EK+ +S  V     ++++Y + G I +A  +      F+  P    + W A++  
Sbjct: 363 HHY-IEKHELSLNVALGTALIDMYAKCGKITKAIQV------FQELPGRNSLTWTAIISG 415

Query: 469 CYLHGN 474
             LHGN
Sbjct: 416 LALHGN 421


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 244/453 (53%), Gaps = 13/453 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     T  S+L  C  LK +E G  +H+L+    L     + + L+ +Y   G +
Sbjct: 210 VNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  VF +M  R      W  +I+GY E G+ E+A+ L   M+ EGV P+  T   ++ 
Sbjct: 270 DEARFVFGRMERRDVIT--WTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVS 327

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC     +  G+ +H  A+R     D  +  +L+ MYAKC  I     VF          
Sbjct: 328 ACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGP 387

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVL 319
           +++++ G + + L+ +A D+F+ M     +P+   ++S+L A A+L  LR    +H ++ 
Sbjct: 388 WSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLT 447

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK----DVVSWNSIIHA---HSKDH 372
           + G    L  A  L+ VYSK G L+ A  +F+ + +K    DVV W ++I     H   H
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGH 507

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
            AL  F +M R GV P+ +TF S L+AC+H G V+ G  LFS M+E Y    R  HY C+
Sbjct: 508 NALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCI 567

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L GRAG +DEAY++I   + FE +  +WGALL AC  H NV +GE AA KLFELEP+N
Sbjct: 568 VDLLGRAGRLDEAYNLIT-TIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPEN 626

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             N+ LL  IY   GR  D+E+V  M+ + GL 
Sbjct: 627 TGNYVLLANIYAALGRWKDMEKVRNMMENVGLR 659



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 210/406 (51%), Gaps = 18/406 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  + +   +LK++  G+ +H  I  +    +K + + LL +Y  FG ++ A  VFD M
Sbjct: 119 TYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVM 178

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            NR   +  WN++ISGY   G   DA+ ++  M  EGV+PD  T   +L  C  L  + +
Sbjct: 179 KNRDVIS--WNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEM 236

Query: 213 GEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           G  VH  ++  R G   +  V NALV+MY KCG + +AR VF R+  +D+I++  M+ GY
Sbjct: 237 GRNVHKLVEEKRLGDKIE--VKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGY 294

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDL 327
           I  G +  A ++ R M   G  P+ V I+S+++   +A  L  G  +HGW +R+ V  D+
Sbjct: 295 IEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDI 354

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            I  SLI +Y+K   +D    +F    +     W++II    ++    +AL  F++M R+
Sbjct: 355 IIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRRE 414

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V P+  T  SLL A A L  ++    +   +  K G    ++    +V++Y + G ++ 
Sbjct: 415 DVEPNIATLNSLLPAYATLADLRQTMNIHCYLT-KTGFMSSLDAATGLVHVYSKCGTLES 473

Query: 445 AYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           A+ +   +++       V+WGAL+    +HG+   G  A Q   E+
Sbjct: 474 AHKIFNGIQEKHKSKDVVLWGALISGYGMHGD---GHNALQVFMEM 516



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 203/394 (51%), Gaps = 16/394 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +N ++V+   + SLL      +++     LH  + T   R +  I S L   YA  G I 
Sbjct: 10  KNALSVKQ--YQSLLNHYAATQSISKTKALHCHVITGG-RVSGHILSTLSVTYALCGHIA 66

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVL 201
            A ++FD+M   +  ++  N +I  Y   G Y DAI ++ +M  EG++  PD +T+P V 
Sbjct: 67  YARKLFDEMPQSSLLSY--NIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVA 124

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           KA   L  I +G  +H   +R  FG D +V NAL+ MY   G +  AR VFD + N+D+I
Sbjct: 125 KAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVI 184

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWV 318
           S+N+M++GY  +G + +A  +F  M+  G DPD   I S+L     L+   +G  VH  V
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLV 244

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
             + +   + + N+L+ +Y K G++D+A ++F  M ++DV++W  +I+ + +D     AL
Sbjct: 245 EEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENAL 304

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
                M+ +GV P+ +T  SL+SAC     +  G+ L    + +   S  +   + ++++
Sbjct: 305 ELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETS-LISM 363

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           Y +   ID  + +          P  W A++  C
Sbjct: 364 YAKCKHIDLCFRVFSGASRNHTGP--WSAIIAGC 395



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 154/300 (51%), Gaps = 18/300 (6%)

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G    G +L+ L   YA CG I  AR +FD +    L+SYN ++  Y+  GL  +A ++F
Sbjct: 44  GGRVSGHILSTLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVF 103

Query: 284 RGMILNGFD--PDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
             M+  G    PD      +   A  L+   +G  +HG +LR     D  + N+L+ +Y 
Sbjct: 104 IRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYM 163

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVS 395
             G+++ A  +FD M  +DV+SWN++I  + ++   ++AL+ F+ M  +GV PDH T VS
Sbjct: 164 NFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVS 223

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L  C HL  +++G  +   +VE+  +  ++E    +VN+Y + G +DEA   +  +ME 
Sbjct: 224 MLPVCGHLKGLEMGRNVHK-LVEEKRLGDKIEVKNALVNMYLKCGRMDEA-RFVFGRME- 280

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQ--KLFELEP--DNEHNFELLIKIYGNAGRLDD 511
               + W  ++      G+V   E A +  +L + E    N      L+   G+A +L+D
Sbjct: 281 RRDVITWTCMINGYIEDGDV---ENALELCRLMQFEGVRPNAVTIASLVSACGDALKLND 337


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 247/444 (55%), Gaps = 38/444 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  LL++C + KA   G ++H  +       +  + + L+ +Y   G +++A
Sbjct: 83  GLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDA 142

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            +VFDQ S+R   ++                              WN++ISGYAE G Y+
Sbjct: 143 RKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 202

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L+  M +  V PD+ T   V+ ACA  G I +G +VHL     GFG +  ++NAL+
Sbjct: 203 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 262

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D+Y+KCG++  A  +F+ +  KD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ V
Sbjct: 263 DLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 322

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            + SIL   A+   + IG  +H ++ +R  GV     +  SLI +Y+K G ++ A  +FD
Sbjct: 323 TMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFD 382

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  + + SWN++I     H K + A   F +M ++G+ PD +TFV LLSAC+H G + +
Sbjct: 383 SMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDL 442

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M + Y I+P++EHY CM++L G  GL  EA  MI   M  E   V+W +LL A
Sbjct: 443 GRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMI-RTMPMEPDGVIWCSLLKA 501

Query: 469 CYLHGNVCMGETAAQKLFELEPDN 492
           C +H NV +GE+ AQ L ++EP+ 
Sbjct: 502 CKMHNNVELGESYAQNLIKIEPET 525



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 131/444 (29%), Positives = 220/444 (49%), Gaps = 59/444 (13%)

Query: 115 RLIPTNLLRKNKGISSKLLR---LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++I T L   N  +S KL+    L   F  +  A  VF+ +         WN++  G+A 
Sbjct: 9   QMIKTGLHNTNYALS-KLIEFCVLSPHFDGLPYAISVFETIQEPNLLI--WNTMFRGHAL 65

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             +   A+ LY  M   G+ P+ +TFP +LK+CA     R G+++H   ++ G+  D +V
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISY---------------------------- 263
             +L+ MY + G +  AR VFD+  ++D++SY                            
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 185

Query: 264 ---NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGW 317
              N+M++GY   G   EA ++F+ M+     PD    V + S  A +  + +G QVH W
Sbjct: 186 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 245

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EA 374
           +   G   +L I N+LI +YSK G+++ AC LF+ +  KDV+SWN++I  ++  +   EA
Sbjct: 246 IDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 305

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GISPRVEHYACM 432
           L+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V + K   G++        +
Sbjct: 306 LLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIG-RWIHVYINKRLKGVTNASSLLTSL 364

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE----- 487
           +++Y + G I EA   + + M    S   W A+++   +HG       AA  LF      
Sbjct: 365 IDMYAKCGDI-EAAKQVFDSM-LTRSLSSWNAMIFGFAMHGKA----NAAFDLFSKMRKN 418

Query: 488 -LEPDNEHNFELLIKIYGNAGRLD 510
            ++PD +  F  L+    ++G LD
Sbjct: 419 GIDPD-DITFVGLLSACSHSGMLD 441



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 159/330 (48%), Gaps = 31/330 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++  +     T  +++  C Q  ++E G ++H  I  +    N  I + L+ LY+  G +
Sbjct: 212 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEV 271

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F+ +S +   +  WN+LI GY  +  Y++A+ L+ +M   G  P+  T   +L 
Sbjct: 272 ETACGLFEGLSYKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 329

Query: 203 ACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           ACA LG I +G  +H  ++    G      +L +L+DMYAKCGDI  A+ VFD +  + L
Sbjct: 330 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSL 389

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+N+M+ G+  HG    AFD+F  M  NG DPD +    +L+  S        H  +L 
Sbjct: 390 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS--------HSGMLD 441

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380
            G      I  S+   Y    KL+    + D +    +           K+ + +I    
Sbjct: 442 LGRH----IFRSMSQDYKITPKLEHYGCMIDLLGHCGLF----------KEAKEMIRTMP 487

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           ME DGV+     + SLL AC    +V++GE
Sbjct: 488 MEPDGVI-----WCSLLKACKMHNNVELGE 512


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 261/454 (57%), Gaps = 24/454 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRLYATFGL 141
           G+ V   T+  +L+ C    A E G     ++   ++R   G    + + L+ +YA  G 
Sbjct: 127 GVGVNNFTYPFVLKVC----ASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGE 182

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           I +AH+VFD+M  R      W ++I+ Y +      A+ L+ +M+EEG   D+ T   V 
Sbjct: 183 IGDAHEVFDRMLIRDVVC--WTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A   LG  R+   VH  AV  GF  D  V N++V MYAKCG++ +AR VFDR+  ++ I
Sbjct: 241 SAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI 300

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWV 318
           S+NSML+GY  +G   +A  +F  M  +  DP+PV    +++  S L    +G ++H +V
Sbjct: 301 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 360

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH--MPQKDVVSWNSII-----HAHSKD 371
           +   ++ D  + N+++ +Y K G LD A  +F++  + ++DV SWN +I     H H K 
Sbjct: 361 ISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK- 419

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EAL  F +M+ +GV P+ +TF S+LSAC+H G +  G + F+ M  K  + P ++HYAC
Sbjct: 420 -EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYAC 477

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV++ GRAG ++EA+ +I +K+    S  VWGALL AC +HGN  +GE AA  LF+LEP+
Sbjct: 478 MVDMLGRAGFLNEAFRLI-KKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPE 536

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +   + L+  IY  + +  +VE V + +  RGL+
Sbjct: 537 HTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLK 570



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 225/435 (51%), Gaps = 24/435 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  LL+ C  L  ++    +H  + T   L       ++L+ LY+  G +  A  +FD  
Sbjct: 28  YDHLLQCCTSLTTLK---LIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHR 84

Query: 153 S------NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
                   +   +F  N+++  YA  G   +AI LY  M+  GV  + FT+P VLK CA 
Sbjct: 85  HHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCAS 144

Query: 207 -LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG +  GE VH   VR GFG D FV  ALVDMYAKCG+I  A  VFDR+  +D++ + +
Sbjct: 145 ELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTA 203

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
           M+T Y      ++A  +FR M   GF  D +   S+ +    L   R+   VHG+ +  G
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNG 263

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
              D+ + NS++ +Y+K G +++A  +FD M +++ +SWNS++  ++++    +AL  F 
Sbjct: 264 FIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN 323

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGR 438
           QM+     P+ +T + ++SAC++LGS  +G +L + V+  K  I   + +   ++++Y +
Sbjct: 324 QMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMK 381

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            G +D A  M       E     W  L+  Y  + HG   +   +  ++  +EP N+  F
Sbjct: 382 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP-NDITF 440

Query: 497 ELLIKIYGNAGRLDD 511
             ++    +AG +D+
Sbjct: 441 TSILSACSHAGLIDE 455


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 255/476 (53%), Gaps = 47/476 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F S L  C  L  +  GI++H LI  +    +  + S L+ +Y+  G++  A + FD M
Sbjct: 153 SFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGM 212

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + R   +  WNSLI+ Y + G    A+ ++  M + GVEPD+ T   V+ ACA    IR 
Sbjct: 213 AVRNIVS--WNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIRE 270

Query: 213 GEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIG--------------- 256
           G ++H   V+     +  VL NALVDMYAKC  + +AR VFDR+                
Sbjct: 271 GLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYA 330

Query: 257 ----------------NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
                            K+++S+N+++ GY  +G   EA  +F  +      P      +
Sbjct: 331 RAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390

Query: 301 IL---ANASLLRIGAQVHGWVLRRGV------EWDLCIANSLIVVYSKDGKLDQACWLFD 351
           +L   AN + L++G Q H  +L+ G       E D+ + NSLI +Y K G ++  C +F+
Sbjct: 391 LLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFE 450

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M ++DVVSWN++I  ++++     AL  F +M   G  PDH+T + +LSAC+H G V+ 
Sbjct: 451 RMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEE 510

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G R F  M  + G++P  +H+ CMV+L GRAG +DEA  +I + M  +   VVWG+LL A
Sbjct: 511 GRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLI-QTMPMQPDNVVWGSLLAA 569

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C +HGN+ +G+  A+KL E++P N   + LL  +Y   GR  DV RV + +  RG+
Sbjct: 570 CKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGV 625



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 230/450 (51%), Gaps = 74/450 (16%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +  FA LL++C + K+     ++H  I          I ++L+  Y   G  ++A +V
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 149 FDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYEDAI 179
           FD+M  R  F++                              WN+++SG+A+   +E+A+
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
             +  M  E    ++++F   L ACAGL  + +G ++H    +  +  D ++ +ALVDMY
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMY 196

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           +KCG +  A+  FD +  ++++S+NS++T Y  +G   +A ++F  M+ NG +PD + ++
Sbjct: 197 SKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLA 256

Query: 300 SIL---ANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP- 354
           S++   A+ S +R G Q+H  V++R     DL + N+L+ +Y+K  ++++A  +FD MP 
Sbjct: 257 SVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 355 ------------------------------QKDVVSWNSIIHAHSK---DHEALIYFEQM 381
                                         +K+VVSWN++I  +++   + EA+  F  +
Sbjct: 317 RNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-----KYGISPRVEHYACMVNLY 436
           +R+ + P H TF +LL+ACA+L  +K+G +  + +++     + G    +     ++++Y
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMY 436

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            + G++++   ++ E+M  E   V W A++
Sbjct: 437 MKCGMVEDG-CLVFERM-VERDVVSWNAMI 464



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 45/328 (13%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGL 141
           + NG+     T AS++  C    A+  G+++H R++  +  R +  + + L+ +YA    
Sbjct: 244 MDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRR 303

Query: 142 IDEAHQVFDQMSNRTAFA-----------------------------FPWNSLISGYAEL 172
           ++EA  VFD+M  R   +                               WN+LI+GY + 
Sbjct: 304 VNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQN 363

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF----- 227
           GE E+A+ L+  ++ E + P  +TF  +L ACA L  +++G + H   ++ GF F     
Sbjct: 364 GENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEE 423

Query: 228 -DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            D FV N+L+DMY KCG +     VF+R+  +D++S+N+M+ GY  +G    A +IFR M
Sbjct: 424 SDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKM 483

Query: 287 ILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA------NSLIVVYSKD 340
           +++G  PD V +  +L+  S    G    G      +  +L +A        ++ +  + 
Sbjct: 484 LVSGQKPDHVTMIGVLSACS--HAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRA 541

Query: 341 GKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           G LD+A  L   MP Q D V W S++ A
Sbjct: 542 GCLDEANDLIQTMPMQPDNVVWGSLLAA 569


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 267/480 (55%), Gaps = 41/480 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  LL++C + K  + G ++H  +       +  + + L+ +YA  G +++A
Sbjct: 84  GLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDA 143

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            +VFD  S+R   ++                              WN++ISGY E G Y+
Sbjct: 144 RKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYK 203

Query: 177 DAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
           +A+ L+ +M     V PD+ T   V+ ACA    I +G  VH      GF  +  ++NAL
Sbjct: 204 EALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNAL 263

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +D+Y+K G++  A  +FD + NKD+IS+N+++ GY H  L  EA  +F+ M+ +G  P+ 
Sbjct: 264 IDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 323

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLR--RGVEWDL-CIANSLIVVYSKDGKLDQACWL 349
           V + SIL   A+   + IG  +H ++ +  +GV  ++  +  SLI +Y+K G +D A  +
Sbjct: 324 VTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQV 383

Query: 350 FD-HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           FD  M  + + +WN++I     H + + A   F +M  +G+ PD +TFV LLSAC+H G 
Sbjct: 384 FDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGM 443

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +G  +F  M   Y I+P++EHY CM++L G +GL  EA  MI   M  E   V+W +L
Sbjct: 444 LDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMPMEPDGVIWCSL 502

Query: 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L AC +HGN+ +GE+ A+KL ++EP N  ++ LL  IY  AGR ++V ++  +L D+G++
Sbjct: 503 LKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMK 562



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 224/458 (48%), Gaps = 53/458 (11%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYAT---FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++I T L   N  +S KLL        F     A  VFD +         WN++  G+A 
Sbjct: 10  QMIKTGLHNTNYALS-KLLEFCVVSPHFDGFPYAISVFDTIQEPNLLI--WNTMFRGHAL 66

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             +   A+ LY  M   G+ PD +TFP +LK+CA   + + G+++H   ++ GF  D +V
Sbjct: 67  SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYV 126

Query: 232 LNALVDMYAKCGDIVKARTV-------------------------------FDRIGNKDL 260
             +L+ MYA+ G +  AR V                               FD I  KD+
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDV 186

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRG-MILNGFDPDP---VAISSILANASLLRIGAQVHG 316
           +S+N+M++GY+  G   EA ++F+  M++    PD    V + S  A +  + +G  VH 
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---E 373
           W+   G   +L I N+LI +YSK G+++ AC LFD +  KDV+SWN++I  ++  +   E
Sbjct: 247 WINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKE 306

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--YGISPRVEHY-A 430
           AL+ F++M R G  P+ +T +S+L ACAHLG++ +G R   V + K   G+   V     
Sbjct: 307 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYINKKLKGVVTNVSSLQT 365

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG--NVCMGETAAQKLFEL 488
            ++++Y + G ID A  +    M    S   W A++    +HG  N      +  ++  +
Sbjct: 366 SLIDMYAKCGDIDAAQQVFDSSMS-NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGI 424

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           EPD +  F  L+    ++G LD    + R +  RG E 
Sbjct: 425 EPD-DITFVGLLSACSHSGMLDLGRNIFRSMT-RGYEI 460


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 252/442 (57%), Gaps = 14/442 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SLL  C +      G+ +H     + L     +S+KL+ LYA FG + +  +VFD+M
Sbjct: 249 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308

Query: 153 SNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
             R   +  WNS+I  Y EL E    AI L+ +M    ++PD  T   +    + LG IR
Sbjct: 309 YVRDLIS--WNSIIKAY-ELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIR 365

Query: 212 VGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
               V    +R G+  +   + NA+V MYAK G +  AR VF+ + NKD+IS+N++++GY
Sbjct: 366 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGY 425

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQVHGWVLRRGVEW 325
             +G   EA +++  M   G +        V++    + A  LR G ++HG +L+ G+  
Sbjct: 426 AQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 485

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQME 382
           D+ +  SL  +Y K G+LD A  LF  +P+ + V WN++I  H       +A++ F++M 
Sbjct: 486 DVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 545

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +GV PDH+TFV+LLSAC+H G V  GE  F +M   YGI+P ++HY CMV+LYGRAG +
Sbjct: 546 DEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQL 605

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           + A + I + M  +    +WGALL AC +HGNV +G+ A++ LFE+EP++     LL  +
Sbjct: 606 EIALNFI-KSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNM 664

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y +AG+ + V+ +  +   +GL
Sbjct: 665 YASAGKWEGVDEIRSITSGKGL 686



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 241/460 (52%), Gaps = 37/460 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+     TF S+L+ C   + V  G K+H L        +  +++ L+ LY  +G +
Sbjct: 145 LSSGLQPDYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAV 201

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVL 201
             A  +FD+M  R   +  WN++ISGY + G  ++A+ L      +G+   D  T   +L
Sbjct: 202 VNARILFDEMPTRDMGS--WNAMISGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLL 254

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC   G    G  +H  +++ G   + FV N L+D+YA+ G +   + VFDR+  +DLI
Sbjct: 255 SACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLI 314

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWV 318
           S+NS++  Y  +   + A  +F+ M L+   PD    ++++SIL+    +R    V G+ 
Sbjct: 315 SWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFT 374

Query: 319 LRRGVEW---DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
           LR+G  W   D+ I N+++V+Y+K G +D A  +F+ +P KDV+SWN+II  ++++    
Sbjct: 375 LRKG--WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFAS 432

Query: 373 EALIYFEQMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
           EA+  +  ME +G  +  +  T+VS+L AC+  G+++ G +L   ++ K G+   V    
Sbjct: 433 EAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLL-KNGLYLDVFVGT 491

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-- 488
            + ++YG+ G +D+A S+  +     + P  W  L+     HG+   GE A     E+  
Sbjct: 492 SLADMYGKCGRLDDALSLFYQIPRVNSVP--WNTLIACHGFHGH---GEKAVMLFKEMLD 546

Query: 489 ---EPDNEHNFELLIKIYGNAGRLDDVERV-ERMLVDRGL 524
              +PD+   F  L+    ++G +D+ E   E M  D G+
Sbjct: 547 EGVKPDHI-TFVTLLSACSHSGLVDEGEWCFEMMQTDYGI 585



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 206/391 (52%), Gaps = 25/391 (6%)

Query: 69  LQALDSIIQDLESSV-------QNGI-TVQTETFASLLETCYQLKAVEHGIKLH-RLIPT 119
           LQ++ +++++  +S        +NG  + + +   +L   C  L++ +    LH RL+ +
Sbjct: 24  LQSVGAVVREFSASANALQDCWKNGNESKEIDDVHTLFRYCTNLQSAK---CLHARLVVS 80

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
           N + +N  IS+KL+ LY   G +  A   FD + NR  +A  WN +ISGY   G   + I
Sbjct: 81  NAI-QNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYA--WNLMISGYGRAGYSSEVI 137

Query: 180 ALY-FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
             +   M   G++PD  TFP VLKAC     +  G K+H  A++FGF +D +V  +L+ +
Sbjct: 138 RCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHL 194

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP-DPVA 297
           Y + G +V AR +FD +  +D+ S+N+M++GY   G   EA  +  G  L   D    V+
Sbjct: 195 YCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDG--LRAMDSVTVVS 252

Query: 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           + S    A     G  +H + ++ G+E +L ++N LI +Y++ G L     +FD M  +D
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRD 312

Query: 358 VVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           ++SWNSII A+  + +   A++ F++M    + PD LT +SL S  + LG ++    +  
Sbjct: 313 LISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQG 372

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             + K      +     +V +Y + GL+D A
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQ-M 381
           ++CI+  L+ +Y   G +  A + FDH+  +DV +WN +I  + +     E +  F   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM 144

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+ PD+ TF S+L AC    +V  G ++  + + K+G    V   A +++LY R G 
Sbjct: 145 LSSGLQPDYRTFPSVLKACR---NVTDGNKIHCLAL-KFGFMWDVYVAASLIHLYCRYGA 200

Query: 442 IDEAYSMIVEKMEFEASPV----VWGALLYACYLHGN 474
           +  A      ++ F+  P      W A++      GN
Sbjct: 201 VVNA------RILFDEMPTRDMGSWNAMISGYCQSGN 231


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 253/448 (56%), Gaps = 13/448 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           + + T T +S+L  C Q   V  G+ +H  +  + L  +  +S+ L+ +Y+ FG + +A 
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VFD M  R   +  WNS+I+ Y +  +   A+  + +M   G+ PD  T   +      
Sbjct: 304 RVFDGMEVRDLVS--WNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQ 361

Query: 207 LGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           L   R+G  VH   VR  +   D  + NALV+MYAK G I  AR VF+++ ++D+IS+N+
Sbjct: 362 LSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNT 421

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQVHGWVLR 320
           ++TGY  +GL  EA D +  M+  G    P     V+I    ++   L+ G ++HG +++
Sbjct: 422 LITGYAQNGLASEAIDAY-NMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK 480

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
             +  D+ +A  LI +Y K G+L+ A  LF  +PQ+  V WN+II +   H    +AL  
Sbjct: 481 NCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQL 540

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+ M  DGV  DH+TFVSLLSAC+H G V   +  F  M ++Y I P ++HY CMV+L+G
Sbjct: 541 FKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFG 600

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +++AY++ V  M  +A   +WG LL AC +HGN  +G  A+ +L E++ +N   + 
Sbjct: 601 RAGYLEKAYNL-VSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYV 659

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  IY N G+ +   +V  +  DRGL 
Sbjct: 660 LLSNIYANVGKWEGAVKVRSLARDRGLR 687



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/441 (30%), Positives = 244/441 (55%), Gaps = 23/441 (5%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF  +L+ C  L     G K+H  +       +  +++ L+ LY+ FG ++ 
Sbjct: 144 SGVRPDFYTFPPVLKACLSLA---DGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEV 200

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH+VF  M  R   +  WN++ISG+ + G   +A+ +  +M+ E V+ D  T   +L  C
Sbjct: 201 AHKVFVDMPVRDVGS--WNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPIC 258

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A    +  G  VHL  ++ G   D FV NAL++MY+K G +  A+ VFD +  +DL+S+N
Sbjct: 259 AQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWN 318

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLR- 320
           S++  Y  +   V A   F+ M+  G  PD    V+++SI    S  RIG  VHG+V+R 
Sbjct: 319 SIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRC 378

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
           R +E D+ I N+L+ +Y+K G +D A  +F+ +P +DV+SWN++I  ++++    EA+  
Sbjct: 379 RWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDA 438

Query: 378 FEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           +  ME    ++P+  T+VS+L A +H+G+++ G ++   ++ K  +   V    C++++Y
Sbjct: 439 YNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLI-KNCLFLDVFVATCLIDMY 497

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN---E 493
           G+ G +++A S+  E  +  + P  W A++ +  +HG+   GE A Q   ++  D    +
Sbjct: 498 GKCGRLEDAMSLFYEIPQETSVP--WNAIISSLGIHGH---GEKALQLFKDMRADGVKAD 552

Query: 494 H-NFELLIKIYGNAGRLDDVE 513
           H  F  L+    ++G +D+ +
Sbjct: 553 HITFVSLLSACSHSGLVDEAQ 573



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 203/384 (52%), Gaps = 25/384 (6%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F  +  +C  +   +   +LH L+      ++  + ++L+ LYAT G +  +   F  + 
Sbjct: 54  FNLVFRSCTNINVAK---QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +  F+  WNS++S Y   G Y D++    + +   GV PD +TFP VLKAC  L     
Sbjct: 111 RKNIFS--WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---D 165

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GEK+H   ++ GF  D +V  +L+ +Y++ G +  A  VF  +  +D+ S+N+M++G+  
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G + EA  +   M       D V +SS+L   A ++ +  G  VH +V++ G+E D+ +
Sbjct: 226 NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFV 285

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
           +N+LI +YSK G+L  A  +FD M  +D+VSWNSII A+ ++ +   AL +F++M   G+
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM 345

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD LT VSL S    L   ++G  +   +V    +   +     +VN+Y + G ID A 
Sbjct: 346 RPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCAR 405

Query: 447 SMIVEKMEFEASP----VVWGALL 466
           ++      FE  P    + W  L+
Sbjct: 406 AV------FEQLPSRDVISWNTLI 423



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 142/276 (51%), Gaps = 10/276 (3%)

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           F  V ++C     I V +++H   +  G   D  +L  LV +YA  GD+  + T F  I 
Sbjct: 54  FNLVFRSCTN---INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILANASLLRIGAQVH 315
            K++ S+NSM++ Y+  G   ++ D    ++ L+G  PD      +L     L  G ++H
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMH 170

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
            WVL+ G E D+ +A SLI +YS+ G ++ A  +F  MP +DV SWN++I    ++    
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL   ++M+ + V  D +T  S+L  CA    V VG  L  + V K+G+   V     +
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDV-VGGVLVHLYVIKHGLESDVFVSNAL 289

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           +N+Y + G + +A   + + ME     V W +++ A
Sbjct: 290 INMYSKFGRLQDA-QRVFDGMEVR-DLVSWNSIIAA 323



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
           +  + + + +  Q+H  +L  G   D+ +   L+ +Y+  G L  +   F H+ +K++ S
Sbjct: 57  VFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 361 WNSIIHAHS-----KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           WNS++ A+      +D    +  E +   GV PD  TF  +L AC  L     GE++   
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVT-ELLSLSGVRPDFYTFPPVLKACLSLAD---GEKM-HC 171

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            V K G    V   A +++LY R G ++ A+ + V+    +     W A++     +GNV
Sbjct: 172 WVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGS--WNAMISGFCQNGNV 229


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 236/432 (54%), Gaps = 44/432 (10%)

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
           KL R YA+ G +D +  +F +  N + F   W ++I G+A  G +E A+  Y QM  +GV
Sbjct: 14  KLQRSYASLGRLDYSVALFGRTQNPSVFF--WTAIIHGHALRGLHEQALNFYAQMLTQGV 71

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           EP+ FTF  +LK C     I  G+ +H  AV+ GF  D +V   L+D+YA+ GD+V A+ 
Sbjct: 72  EPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQ 127

Query: 251 VFDRIGNKDLISYNSMLT-------------------------------GYIHHGLLVEA 279
           +FD +  K L+S  +MLT                               GY  +G+  EA
Sbjct: 128 LFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 187

Query: 280 FDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             +FR M+     P+ V + S+L+       L  G  VH ++   G+++++ +  +L+ +
Sbjct: 188 LVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDM 247

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTF 393
           YSK G L+ A  +FD +  KDVV+WNS+I  ++      EAL  F+ M R G+ P ++TF
Sbjct: 248 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITF 307

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           + +LSAC H G V  G  +F+ M ++YGI P++EHY CMVNL GRAG +++AY + V+ M
Sbjct: 308 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYEL-VKNM 366

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
             E  PV+WG LL AC LHG + +GE   + L +    N   + LL  IY   G  D V 
Sbjct: 367 NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVA 426

Query: 514 RVERMLVDRGLE 525
           R+  M+ D G++
Sbjct: 427 RLRTMMKDSGVK 438


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 260/478 (54%), Gaps = 37/478 (7%)

Query: 77  QDLESSVQNGITVQTETF------ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
             L +   N IT+  + +       SL++ C + K ++   ++H  +    L  +   +S
Sbjct: 15  HSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLK---QIHAQMLRTGLFFDPFSAS 71

Query: 131 KLLRLYA--TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           +L+   A   F  +D A QVFDQ+ +   +   WN+LI  YA       ++ ++ +M  +
Sbjct: 72  RLITAAALSPFPSLDYAQQVFDQIPHPNLYT--WNTLIRAYASSSNPHQSLLIFLRMLHQ 129

Query: 189 GVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             + PD+FTFP ++KA + L  +  G+  H   ++   G D F+LN+L+  YAKCG++  
Sbjct: 130 SPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGL 189

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
              VF     +D++S+NSM+T ++  G   EA ++F+ M      P+ + +  +L   A 
Sbjct: 190 GYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAK 249

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S    G  VH ++ R  +   L ++N+++ +Y+K G ++ A  LFD MP+KD+VSW ++
Sbjct: 250 KSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTM 309

Query: 365 I-----------------HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           +                 H H KD  A+  F +M+ D V P+ +TF ++L AC+H+G V+
Sbjct: 310 LVGYAKIGEYDAAQGLAMHGHGKD--AIALFSKMQEDKVKPNAVTFTNILCACSHVGLVE 367

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G   F+ M   YG+ P V+HYACMV++ GRAGL++EA  +I EKM    +  VWGALL 
Sbjct: 368 EGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELI-EKMPMAPAASVWGALLG 426

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AC +H NV + E A  +L ELEP N   + LL  IY  AG+ D V  + +++ D GL+
Sbjct: 427 ACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLK 484


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/479 (33%), Positives = 265/479 (55%), Gaps = 17/479 (3%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           + P+PL+     F       L   ++ +++  ++G+     T++ L++ C    AV+ G 
Sbjct: 18  ADPSPLVNEFANF--CHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGK 75

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H  I          + + LL +Y  F L++EA  +FD+M  R   +  W ++IS Y+ 
Sbjct: 76  RVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVS--WTTMISAYSN 133

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
               + A+     M  EGV P+ FT+  VL+AC GL  +R   ++H   ++ G   D FV
Sbjct: 134 KLN-DKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLESDVFV 189

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            +AL+D+Y+K  D+  A  VFD +  +DL+ +NS++ G+  +    EA ++F+ M   GF
Sbjct: 190 RSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGF 249

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             D   ++S+L      +LL +G QVH  VL+   + DL + N+LI +Y K G L+ A  
Sbjct: 250 LADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANS 307

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
            F  M +KDV+SW++++   +++    +AL  FE M+  G  P+++T + +L AC+H G 
Sbjct: 308 AFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGL 367

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           V+ G   F  M + +G+ P  EHY C+++L GRAG +DEA  +I E ME E   V W  L
Sbjct: 368 VEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHE-MECEPDSVTWRTL 426

Query: 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           L AC +H NV +   AA+K+ ELEP++   + LL  IY N  R +DV  V + + +RG+
Sbjct: 427 LGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGI 485


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/443 (37%), Positives = 251/443 (56%), Gaps = 14/443 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            +A++L +C   +AV  G +LH  +  +    +  ++++L+ LYA+ G +  A +VFD+M
Sbjct: 70  NYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM 129

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIR 211
            N+    F WN LI  YA  G  E AI LY  M   G ++PD FT+P VLKACA L  + 
Sbjct: 130 PNQ-GNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLS 188

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G +VH   +R  +  D FV   L+DMYAKCG + +A  VF+    +D   +NSM+    
Sbjct: 189 AGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACG 248

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAI---SSILANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   EA  + R M   G  P    +    S  A AS L  G ++HG+  RRG      
Sbjct: 249 QNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDK 308

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMER 383
           +  SL+ +Y+K G +  A  LF+ +  ++++SWN++I     H H+ DH A   F +M  
Sbjct: 309 LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHA-DH-AFELFSRMRS 366

Query: 384 DG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           +  V+PDH+TFV +LSAC H G V+  + +F +MV  Y I P V+HY C+V++ G +G  
Sbjct: 367 EAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRF 426

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA S +++ M  +    +WGALL  C +H NV + E A QKL ELEP++  N+ LL  I
Sbjct: 427 KEA-SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNI 485

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
           Y  +G+ ++  RV +++ +RGL+
Sbjct: 486 YAESGKWEEAARVRKLMTNRGLK 508


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/400 (38%), Positives = 233/400 (58%), Gaps = 9/400 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +S  L+ +Y+   L+++A   F+ +  +   A  WN++ISGY++  E  +A++L+ +M +
Sbjct: 369 VSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA--WNAIISGYSQYWEDMEALSLFVEMHK 426

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG+  +Q T   +LK+ AGL ++ V  +VH  +V+ GF  D +V+N+L+D Y KC  +  
Sbjct: 427 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVED 486

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A  +F+     DL+S+ SM+T Y  +G   EA  +F  M      PD    SS+L   AN
Sbjct: 487 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 546

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S    G Q+H  +L+ G   D+   NSL+ +Y+K G +D A   F  + ++ +VSW+++
Sbjct: 547 LSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAM 606

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H    +AL  F QM ++GV P+H+T VS+L AC H G V   +  F  M E +G
Sbjct: 607 IGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFG 666

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
             P  EHYACM++L GRAG I+EA  + V KM FEA+  VWGALL A  +H +V +G  A
Sbjct: 667 FKPMQEHYACMIDLLGRAGKINEAVEL-VNKMPFEANASVWGALLGAARIHKDVELGRRA 725

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           A+ LF LEP+      LL  IY +AG+ ++V  V R++ D
Sbjct: 726 AEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRD 765



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 174/306 (56%), Gaps = 8/306 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +   T  + +++ LL  C   K++  G+++H  I  + L  +  I + L+ LY+      
Sbjct: 49  KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFG 108

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A ++ D+ S     +  W++LISGYA+ G    A+  + +M   GV+ ++FTF  VLKA
Sbjct: 109 YARKLVDESSEPDLVS--WSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKA 166

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ +  +R+G++VH   V  GF  D FV N LV MYAKC + + ++ +FD I  ++++S+
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSW 226

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N++ + Y+      EA  +F  M+L+G  P+  ++SS++   + LR    G  +HG++++
Sbjct: 227 NALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G +WD   AN+L+ +Y+K G L  A  +F+ + Q D+VSWN++I     H    +AL  
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 378 FEQMER 383
             QM+R
Sbjct: 347 LGQMKR 352



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 231/481 (48%), Gaps = 74/481 (15%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF+S+L+ C  +K +  G ++H ++  +    +  +++ L+ +YA      ++
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS 211

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD++  R   +  WN+L S Y +     +A+ L+++M   G++P++F+   ++ AC 
Sbjct: 212 KRLFDEIPERNVVS--WNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL     G+ +H   ++ G+ +D F  NALVDMYAK GD+  A +VF++I   D++S+N+
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           ++ G + H    +A ++                        L ++  Q+H  +++  +E 
Sbjct: 330 VIAGCVLHEHHEQALEL------------------------LGQMKRQLHSSLMKMDMES 365

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQME 382
           DL ++  L+ +YSK   L+ A   F+ +P+KD+++WN+II  +S+   D EAL  F +M 
Sbjct: 366 DLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMH 425

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV---------------MVEKYGISPRVE 427
           ++G+  +  T  ++L + A L  V V  ++  +               +++ YG    VE
Sbjct: 426 KEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVE 485

Query: 428 ---------------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACY 470
                           +  M+  Y + G  +EA  + +E  + E  P   V  +LL AC 
Sbjct: 486 DAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC- 544

Query: 471 LHGNVCMGETAAQKLFELEPDNEHNFEL-------LIKIYGNAGRLDDVERVERMLVDRG 523
              N+   E   Q    +    ++ F L       L+ +Y   G +DD  R    L +RG
Sbjct: 545 --ANLSAFEQGKQLHVHIL---KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG 599

Query: 524 L 524
           +
Sbjct: 600 I 600



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 161/318 (50%), Gaps = 9/318 (2%)

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
           P   LI    +  E     A+   +++    P   ++ ++L  C     +R G ++H   
Sbjct: 23  PAPKLIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHI 82

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
            + G   D  + N L+++Y+KC     AR + D     DL+S++++++GY  +GL   A 
Sbjct: 83  TKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGAL 142

Query: 281 DIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
             F  M L G   +    SS+L   S+   LRIG QVHG V+  G E D+ +AN+L+V+Y
Sbjct: 143 MAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMY 202

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFV 394
           +K  +   +  LFD +P+++VVSWN++   + +     EA+  F +M   G+ P+  +  
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           S+++AC  L     G+ +   ++ K G          +V++Y + G + +A S + EK++
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLI-KLGYDWDPFSANALVDMYAKVGDLADAIS-VFEKIK 320

Query: 455 FEASPVVWGALLYACYLH 472
            +   V W A++  C LH
Sbjct: 321 -QPDIVSWNAVIAGCVLH 337



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 152/289 (52%), Gaps = 7/289 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI     T +++L++   L+ V    ++H L   +    +  + + L+  Y     ++
Sbjct: 426 KEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVE 485

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A ++F++ +     +F   S+I+ YA+ G+ E+A+ L+ +M++  ++PD+F    +L A
Sbjct: 486 DAERIFEECTIGDLVSF--TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 543

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L     G+++H+  +++GF  D F  N+LV+MYAKCG I  A   F  +  + ++S+
Sbjct: 544 CANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSW 603

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA--NASLLRIGAQVHGWVLRR 321
           ++M+ G   HG   +A  +F  M+  G  P+ + + S+L   N + L   A+++   +  
Sbjct: 604 SAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEE 663

Query: 322 --GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             G +        +I +  + GK+++A  L + MP + +   W +++ A
Sbjct: 664 LFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGA 712


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 245/449 (54%), Gaps = 7/449 (1%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++G +    TF   +++C  L     G +LH  +          + + L+ +Y    LI
Sbjct: 2   LRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLI 61

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A ++FD+          +NSL+SGYA     +D + L+ +M E GVE +  T   +++
Sbjct: 62  DNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQ 121

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C   G + +G  VH   V+FG   D  V N L+ MY K G+I   R +FD +  K LI+
Sbjct: 122 PCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLIT 181

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           +N+M+ GY  +GL     ++++ M   GF PDP+ +  +L++ +    L +G +V   + 
Sbjct: 182 WNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKME 241

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
             G   +  + N+L+ +Y++ G L +A  +FD MP K VVSW +II     H +   A+ 
Sbjct: 242 GFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVG 301

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M R G+ PD   FVS+LSAC+H G    G   F VM  KYG+ P  EHY+CMV+L 
Sbjct: 302 LFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLL 361

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++EA  +I E M+  A   +WGALL AC +H NV + E A +++ ELEP N   +
Sbjct: 362 GRAGRLNEARELI-ESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYY 420

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  +Y  AG L+ + RV  ++  R L+
Sbjct: 421 VLLSNVYTEAGNLEGILRVRMLMRKRKLK 449



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 188/386 (48%), Gaps = 57/386 (14%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M   G  P+ FTFP  +K+CA L L   G+++H    + G   + FV  +L+ MY KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 245 IVKARTVFDR--IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           I  AR +FD      K  + YNS+L+GY  +  + +   +F  M   G + + V +  ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 303 ANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
               +   L +G  VHG+ ++ G++ D  + N L+ +Y K G++D    LFD MP+K ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WN++I+ ++++   +  L  +++ME  G  PD LT V +LS+CAHLG++ VG+ +   M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
            E +G S        +VN+Y R G + +A   I + M  + S V W A++    +HG   
Sbjct: 241 -EGFGFSSNPFLNNALVNMYARCGNLKKARD-IFDGMPVK-SVVSWTAIIGGYGMHGQ-- 295

Query: 477 MGETAA-----------------------------------------QKLFELEPDNEHN 495
            GE A                                          ++ + L P  EH 
Sbjct: 296 -GEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEH- 353

Query: 496 FELLIKIYGNAGRLDDV-ERVERMLV 520
           +  ++ + G AGRL++  E +E M V
Sbjct: 354 YSCMVDLLGRAGRLNEARELIESMQV 379



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           + +++ES    G      T   +L +C  L A+  G ++ R +       N  +++ L+ 
Sbjct: 201 LYKEMESK---GFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVN 257

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA  G + +A  +FD M  ++  +  W ++I GY   G+ E A+ L+ +M   G++PD 
Sbjct: 258 MYARCGNLKKARDIFDGMPVKSVVS--WTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDG 315

Query: 195 FTFPRVLKACAGLGLIRVG-EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             F  VL AC+  GL   G +   +   ++G        + +VD+  + G + +AR + +
Sbjct: 316 TAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIE 375

Query: 254 RI 255
            +
Sbjct: 376 SM 377


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 248/439 (56%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SL+ T   +  + +G  +H  I       +  +S+ L+ +Y     +++ ++VF+ M
Sbjct: 154 TLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAM 213

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +N    +  WN+L+SG+ +         +++QM  EG +P+ FTF  VL++C+ L     
Sbjct: 214 TNPDLVS--WNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEF 271

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   ++     D FV  ALVDMYAK   +  A   FDR+ N+D+ S+  +++GY  
Sbjct: 272 GKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQ 331

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
                +A   FR M   G  P+   ++S L+  S    L  G Q+H   ++ G   D+ +
Sbjct: 332 TDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFV 391

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            ++L+ +Y K G ++ A  +F  +  +D+VSWN+II     H +  +AL  F  M  +G+
Sbjct: 392 GSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGI 451

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PD  TF+ +LSAC+ +G V+ G++ F  M + YGI+P +EHYACMV++ GRAG  +E  
Sbjct: 452 MPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEV- 510

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            + +E+M      ++W  +L AC LHGNV  GE AA+KLFE+EP  + ++ LL  I+ + 
Sbjct: 511 KIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASK 570

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR DDV  +  ++  RG++
Sbjct: 571 GRWDDVRNIRALMTSRGIK 589



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 228/466 (48%), Gaps = 52/466 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +++L+ C    ++  G  LH L   +    ++ +   L+ +Y+  G + +A +VF ++
Sbjct: 53  TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N    A  W+++I+G  + G  ++A  L+  M  +G  P+QFT   ++     +G +R 
Sbjct: 113 RNPDVVA--WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRY 170

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H    ++GF  D  V N L+ MY K   +     VF+ + N DL+S+N++L+G+  
Sbjct: 171 GQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYD 230

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
                    IF  M+L GF P+     S+L + S L     G QVH  +++   + D  +
Sbjct: 231 SQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFV 290

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
             +L+ +Y+K   L+ A   FD +  +D+ SW  II  +++  +   A+ YF QM+R+G+
Sbjct: 291 GTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGI 350

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID--- 443
            P+  T  S LS C+H+ +++ G +L +V V K G    +   + +V+LYG+ G ++   
Sbjct: 351 KPNEYTLASCLSGCSHMATLENGRQLHAVAV-KAGHFGDIFVGSALVDLYGKCGCMEHAE 409

Query: 444 -------------------------------EAYSMIVEK--MEFEASPVVWGALLYACY 470
                                          EA+ M++ +  M  EA+ +    +L AC 
Sbjct: 410 AIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFI---GVLSACS 466

Query: 471 LHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
             G V  G+    +  K++ + P  EH +  ++ I G AG+ ++V+
Sbjct: 467 FMGLVEEGKKRFDSMSKIYGINPSIEH-YACMVDILGRAGKFNEVK 511



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 169/307 (55%), Gaps = 13/307 (4%)

Query: 151 QMSNRTAFAFP------WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           +++ R  F  P      WN+L++GYA+LG+ +  + L+ +M+E   +  +FT   VLK C
Sbjct: 2   ELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGC 61

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A  G +R G+ +H  A+R G   D F+  +LVDMY+KCG +  A  VF +I N D+++++
Sbjct: 62  ANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           +M+TG    G   EA ++F  M   G  P+   +SS+++ A+    LR G  +HG + + 
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKY 181

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G E D  ++N LI++Y K   ++    +F+ M   D+VSWN+++               F
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIF 241

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM  +G  P+  TF+S+L +C+ L   + G+++ + +++           A +V++Y +
Sbjct: 242 YQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA-LVDMYAK 300

Query: 439 AGLIDEA 445
           A  +++A
Sbjct: 301 ARCLEDA 307



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI     T AS L  C  +  +E+G +LH +        +  + S L+ LY   G ++
Sbjct: 347 REGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCME 406

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  +F  + +R   +  WN++ISGY++ G+ E A+  +  M  EG+ PD+ TF  VL A
Sbjct: 407 HAEAIFKGLISRDIVS--WNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSA 464

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           C+ +GL+  G+K   D++   +G     +N  ++ YA   DI+     F+ +
Sbjct: 465 CSFMGLVEEGKK-RFDSMSKIYG-----INPSIEHYACMVDILGRAGKFNEV 510


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 251/448 (56%), Gaps = 13/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDE 144
           G+ +   T  ++   C  +  +  G  LH   I    L +    ++ LL +Y+  G ++ 
Sbjct: 347 GVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNS 406

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VF++M  +T  +  W S+I+GY   G  + AI L+ +M+  GV PD +    +L AC
Sbjct: 407 AIRVFERMDEKTVVS--WTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNAC 464

Query: 205 AGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           A  G ++ G+ VH D +R      + FV NAL DMYAKCG +  A  VF  +  KD+IS+
Sbjct: 465 AINGNLKSGKIVH-DYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISW 523

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLR 320
           N+M+ GY  + L  EA  +F  M      PD   ++ IL A ASL  L  G ++HG+ LR
Sbjct: 524 NTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALR 582

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D  + N+++ +Y K G L  A  LFD +P KD+VSW  +I     H    EA+  
Sbjct: 583 NGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINT 642

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM   G+ PD ++F+S+L AC+H G +  G ++F++M ++  I P +EHYACMV+L  
Sbjct: 643 FNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLA 702

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G + +A+  I + M  +    +WGALL  C +H +V + E  A+++FELEP+N   + 
Sbjct: 703 RTGNLVKAHKFI-KAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYV 761

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  IY  A + ++V+++ + +  RGL+
Sbjct: 762 LLANIYAEAEKWEEVQKLRKKIGQRGLK 789



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 231/447 (51%), Gaps = 40/447 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI   + TF+S+L+    +  VE G ++H LI          + + L+  Y     +  A
Sbjct: 246 GIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCA 305

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD++++R   +  WNS+ISGY + G  +  I ++ +M   GV+ D  T   V  ACA
Sbjct: 306 QKLFDELTDRDVIS--WNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363

Query: 206 GLGLIRVGEKVH--------LD-AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
            +G + +G+ +H        LD  VRF         N L+DMY+KCGD+  A  VF+R+ 
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFN--------NTLLDMYSKCGDLNSAIRVFERMD 415

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQ 313
            K ++S+ SM+TGY+  GL   A  +F  M   G  PD  A++SIL   ++   L+ G  
Sbjct: 416 EKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKI 475

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           VH ++    +E +  ++N+L  +Y+K G +  A  +F HM +KDV+SWN++I  ++K+  
Sbjct: 476 VHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSL 535

Query: 372 -HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
            +EAL  F +M+R+   PD  T   +L ACA L ++  G  +    + + G S       
Sbjct: 536 PNEALTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHGYAL-RNGYSEDKYVTN 593

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL--YACYLHGNVCMGETAAQK 484
            +V++Y + GL+  A S+      F+  P    V W  ++  Y  + +G+  +      +
Sbjct: 594 AVVDMYVKCGLLVLARSL------FDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMR 647

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDD 511
           +  +EPD E +F  ++    ++G LD+
Sbjct: 648 MTGIEPD-EVSFISILYACSHSGLLDE 673



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 194/347 (55%), Gaps = 14/347 (4%)

Query: 76  IQDLESSVQNGITVQTETF-----ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
           + DL+++++   + Q   F      S+L+ C + K++  G ++  +I ++ +  +  +  
Sbjct: 130 VGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGV 189

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
           KL+ +Y   G + E   VFD++S    F   WN +IS Y+  G Y ++I L+ QM E G+
Sbjct: 190 KLVFMYVKCGDLKEGRMVFDKLSESKIFL--WNLMISEYSGSGNYGESINLFKQMLELGI 247

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           +P+ +TF  +LK  A +  +  G +VH    + GF     V+N+L+  Y     +  A+ 
Sbjct: 248 KPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQK 307

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
           +FD + ++D+IS+NSM++GY+ +GL     +IF  M++ G D D   + ++    AN   
Sbjct: 308 LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGT 367

Query: 308 LRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
           L +G  +H + ++   ++ ++   N+L+ +YSK G L+ A  +F+ M +K VVSW S+I 
Sbjct: 368 LLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            + ++     A+  F++M+  GV+PD     S+L+ACA  G++K G+
Sbjct: 428 GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGK 474



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 168/332 (50%), Gaps = 9/332 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I+  +     G+        S+L  C     ++ G  +H  I  N L  N  +S+ L
Sbjct: 436 DGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNAL 495

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
             +YA  G + +AH VF  M  +   +  WN++I GY +     +A+ L+ +M+ E  +P
Sbjct: 496 TDMYAKCGSMKDAHDVFSHMKKKDVIS--WNTMIGGYTKNSLPNEALTLFAEMQRES-KP 552

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   +L ACA L  +  G ++H  A+R G+  D +V NA+VDMY KCG +V AR++F
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
           D I NKDL+S+  M+ GY  HG   EA + F  M + G +PD V+  SIL   +++ LL 
Sbjct: 613 DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLD 672

Query: 310 IGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
            G ++   + +   +E +L     ++ + ++ G L +A      MP K D   W +++  
Sbjct: 673 EGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCG 732

Query: 368 HSKDHEALIYFEQMERDGVL-PDHLTFVSLLS 398
               H+  +  +  ER   L P++  +  LL+
Sbjct: 733 CRIHHDVKLAEKVAERIFELEPENTGYYVLLA 764


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 254/442 (57%), Gaps = 10/442 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G   +   + + +  C + +A+  G ++H  +     R    ++++L+ LY   G +D+A
Sbjct: 36  GADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDA 95

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             V D M  R   +  W ++ISGY++ G + +A+ L+ +M   G + ++FT   VL +C 
Sbjct: 96  RNVLDGMPERNVVS--WTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCP 153

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               I+  E+VH   V+  F    FV ++L+DMY K G+I +AR VFD +  +D +S  +
Sbjct: 154 VHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTA 213

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           +++GY   GL  EA D+FR +  +G   + V  +++L + S    L  G QVHG +LR+ 
Sbjct: 214 IISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKE 273

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           + + + + NSLI +YSK GKL  +  +FD+MPQ+  +SWN+++     H    E +  F 
Sbjct: 274 LPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFR 333

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M  + V PD +T +++LS C+H G V  G  +F ++V++      + HY C+++L GR+
Sbjct: 334 TMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRS 392

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +A  +I E M FE +P +WG+LL AC +H NV +GE  AQKL ++EP N  N+ +L
Sbjct: 393 GQLQKALDLI-EHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVIL 451

Query: 500 IKIYGNAGRLDDVERVERMLVD 521
             IY  AG   DV RV +++++
Sbjct: 452 SNIYAAAGMWKDVFRVRKLMLE 473


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 244/421 (57%), Gaps = 9/421 (2%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H  I  +   +++ + +KLL L    G I    Q+F  + N  +F F   SLI   ++
Sbjct: 30  QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLF--TSLIKSTSK 87

Query: 172 LGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
              +   ++  Y +M    V P  +TF  V+K+CA L  ++ G  VH   +  GFG D +
Sbjct: 88  SHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVY 147

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V  ALV +Y KCGD++ AR VFD+I  + ++++NSM++GY  +G   EA  +F  M   G
Sbjct: 148 VQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG 207

Query: 291 FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            +PD     S+L+  + L    +G  VH +++  G++ ++ +  SLI +Y + G + +A 
Sbjct: 208 VEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAR 267

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +FD M +++VV+W ++I  +  +    +A+  F +M R+G+ P+ +TFV++LSACAH G
Sbjct: 268 EVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAG 327

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            V  G RLF+ + E+Y + P VEH  C+V++ GRAGL+DEAY+ I E++    +P +  A
Sbjct: 328 LVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTA 387

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +L AC +H N  +G   A+ L   EP+N  ++ +L  IY  AGR+D VE V   ++ + L
Sbjct: 388 MLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCL 447

Query: 525 E 525
           +
Sbjct: 448 K 448



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 186/371 (50%), Gaps = 48/371 (12%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V + ++    TF S++++C  L A++HG  +H  +  +    +  + + L+ LY   G +
Sbjct: 103 VLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDL 162

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD++  R+  A  WNS+ISGY + G  ++AI L+ +M+E GVEPD  TF  VL 
Sbjct: 163 INARKVFDKIRERSIVA--WNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLS 220

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG   +G  VH   V  G   +  +  +L++MY +CG++ KAR VFD +  +++++
Sbjct: 221 ACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVA 280

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWV- 318
           + +M++GY  +G   +A ++F  M  NG  P+    VA+ S  A+A L+  G ++   + 
Sbjct: 281 WTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIR 340

Query: 319 ----LRRGVEWDLCIANSLIVVYSKDGKLDQAC-WLFDHMPQKDVVSWNSIIHAHSKDHE 373
               L  GVE ++C+ + L     + G LD+A  ++ + +P+                  
Sbjct: 341 EEYHLVPGVEHNVCLVDML----GRAGLLDEAYNFIKEEIPEN----------------- 379

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
                         P      ++L AC    +  +G ++   ++     +P   HY  + 
Sbjct: 380 --------------PAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENP--AHYVILS 423

Query: 434 NLYGRAGLIDE 444
           N+Y  AG +D+
Sbjct: 424 NIYALAGRMDQ 434


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 237/404 (58%), Gaps = 9/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +S+  +  YA  G ++ A +VF  + ++T  +  WN+LI G+A+ G+   A+ L FQM  
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSS--WNALIGGHAQNGDPRKALHLLFQMTY 444

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G +PD FT   +L ACA L  ++ G+++H   +R G   D FV  +L+  Y  CG    
Sbjct: 445 SGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASS 504

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR +FDR+ +K+L+S+N+M++GY  +GL  E+  +FR  +  G     +AI S+    + 
Sbjct: 505 ARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQ 564

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S LR+G + HG+VL+     D  +  S+I +Y+K G + ++  +FD +  K+V SWN+I
Sbjct: 565 LSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAI 624

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I A   H    EA+  +E+M++ G +PD  T++ +L AC H G V+ G + F  M     
Sbjct: 625 IVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNL 684

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P++EHYAC++++  RAG +D+A  ++ E M  EA   +W +LL +C   G + +GE  
Sbjct: 685 IEPKLEHYACLIDMLARAGRLDDALRLVNE-MPEEADNRIWSSLLRSCRTFGALEIGEKV 743

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A+KL ELEPD   N+ LL  +Y   G+ D V RV +M+ + GL+
Sbjct: 744 AKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQ 787



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 189/336 (56%), Gaps = 16/336 (4%)

Query: 79  LESSVQNG--ITVQT-ETFASLLETCYQLKAVEHGIKLHRLIPTNL-LRKNKGISSKLLR 134
           ++S  QN   I++Q  E    LL+ C   K +E G +LH+ +  +   R +  ++++L++
Sbjct: 28  IQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIK 87

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPD 193
           +YA  G   ++  VFD M  +      WN+L+SGY   G Y D + ++  +  +   +PD
Sbjct: 88  MYAMCGSPLDSRLVFDNMETKNLI--QWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPD 145

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
            FTFP V+KAC G+  +R+GE +H   ++ G   D FV NALV MY KCG + +A  VFD
Sbjct: 146 NFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFD 205

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLR 309
            +   +L+S+NSM+  +  +G   ++FD+   M+   G  PD V + +IL   A    + 
Sbjct: 206 FMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVD 265

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
           IG  +HG  ++ G+  ++ + N+++ +YSK G L++A   F     K+VVSWN++I A S
Sbjct: 266 IGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFS 325

Query: 370 KD---HEALIYFEQMERDG--VLPDHLTFVSLLSAC 400
            +   +EA    ++M+  G  +  + +T +++L AC
Sbjct: 326 LEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 156/285 (54%), Gaps = 12/285 (4%)

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA-LVDMYAKCGDIVKARTVFDRIGNK 258
           +L+AC     I  G ++H          + +VLN  L+ MYA CG  + +R VFD +  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL-ANASLL--RIGAQV 314
           +LI +N++++GY  +GL  +   +F  ++ +  F PD     S++ A   +L  R+G  +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           HG V++ G+  D+ + N+L+ +Y K G +D+A  +FD MP+ ++VSWNS+I A S++  +
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFS 228

Query: 375 LIYF----EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
              F    E +  +G+LPD +T V++L  CA  G V +G  +  + V K G+S  V    
Sbjct: 229 RDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV-KLGLSEEVMVNN 287

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            MV +Y + G ++EA    V+      + V W  ++ A  L G+V
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKNN--NKNVVSWNTMISAFSLEGDV 330



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 176/359 (49%), Gaps = 47/359 (13%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SLL  C  LK++++G ++H  +  N L  +  + + LL  Y   G    A  +FD+M
Sbjct: 453 TISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM 512

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++   +  WN++ISGY++ G   +++AL+ +   EG++  +     V  AC+ L  +R+
Sbjct: 513 KDKNLVS--WNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRL 570

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++ H   ++     D FV  +++DMYAK G I ++R VFD + +K++ S+N+++  +  
Sbjct: 571 GKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGI 630

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG----AQVHGWVLRRGVEW 325
           HG   EA +++  M   G  PD      IL    +A L+  G     ++  + L   +E 
Sbjct: 631 HGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNL---IEP 687

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG 385
            L     LI + ++ G+LD A  L + MP++                             
Sbjct: 688 KLEHYACLIDMLARAGRLDDALRLVNEMPEE----------------------------- 718

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLID 443
              D+  + SLL +C   G++++GE++   ++E   + P + E+Y  + NLY   G  D
Sbjct: 719 --ADNRIWSSLLRSCRTFGALEIGEKVAKKLLE---LEPDKAENYVLLSNLYAGLGKWD 772



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)

Query: 18  IHCG-SKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSII 76
           IHCG + + R    R + +  +S N +   S Y          +Q   P   L       
Sbjct: 497 IHCGKASSARVLFDRMKDKNLVSWNAM--ISGY----------SQNGLPYESLALF---- 540

Query: 77  QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
                S+  GI        S+   C QL A+  G + H  +   L  ++  +   ++ +Y
Sbjct: 541 ---RKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMY 597

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G I E+ +VFD + ++   +  WN++I  +   G  ++AI LY +M++ G  PD+FT
Sbjct: 598 AKSGCIKESRKVFDGLKDKNVAS--WNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFT 655

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGF---GFDGFVLNALVDMYAKCGDIVKA 248
           +  +L AC   GL+  G K   +   F       + +    L+DM A+ G +  A
Sbjct: 656 YIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYA--CLIDMLARAGRLDDA 708


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 255/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T++S+L  C +L  +  G +LH  +    L  +  +   L+ +YA     G +D++ +VF
Sbjct: 53  TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 112

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           +QM      +  W ++I+ YA+ GE + +AI L+ +M    + P+ F+F  VLKAC  L 
Sbjct: 113 EQMPEHNVMS--WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 170

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               GE+V+  AV+ G      V N+L+ MYA+ G +  AR  FD +  K+L+SYN+++ 
Sbjct: 171 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 230

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEW 325
           GY  +    EAF +F  +   G        +S+L+ A+    +  G Q+HG +L+ G + 
Sbjct: 231 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 290

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           + CI N+LI +YS+ G ++ A  +F+ M  ++V+SW S+I   +K      AL  F +M 
Sbjct: 291 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 350

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G  P+ +T+V++LSAC+H+G +  G++ F+ M +++GI PR+EHYACMV+L GR+GL+
Sbjct: 351 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 410

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I   M   A  +VW  LL AC +HGN  +G  AA+ + E EPD+   + LL  +
Sbjct: 411 VEAMEFI-NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 469

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           + +AG+  DV ++ + + +R L
Sbjct: 470 HASAGQWKDVVKIRKSMKERNL 491



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 189/339 (55%), Gaps = 15/339 (4%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A++VFD+M  R      W  +I+ +A+LG   DAI L+  ME  G  PD+FT+  VL AC
Sbjct: 4   AYKVFDKMPERNLVT--WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGNKDLI 261
             LGL+ +G+++H   +R G   D  V  +LVDMYAKC   G +  +R VF+++   +++
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 262 SYNSMLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           S+ +++T Y   G    EA ++F  MI     P+  + SS+L    N S    G QV+ +
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
            ++ G+    C+ NSLI +Y++ G+++ A   FD + +K++VS+N+I+  ++K+    EA
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            + F ++   G+     TF SLLS  A +G++  GE++   ++ K G          +++
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL-KGGYKSNQCICNALIS 300

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +Y R G I+ A+ +  E ME + + + W +++     HG
Sbjct: 301 MYSRCGNIEAAFQVFNE-ME-DRNVISWTSMITGFAKHG 337



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI +   TFASLL     + A+  G ++H  +     + N+ I + L+ +Y+  G I+ 
Sbjct: 251 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 310

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A QVF++M +R   +  W S+I+G+A+ G    A+ ++ +M E G +P++ T+  VL AC
Sbjct: 311 AFQVFNEMEDRNVIS--WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 368

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFV-----LNALVDMYAKCGDIVKA 248
           + +G+I  G+K H +++   +   G V        +VD+  + G +V+A
Sbjct: 369 SHVGMISEGQK-HFNSM---YKEHGIVPRMEHYACMVDLLGRSGLLVEA 413


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 158/430 (36%), Positives = 249/430 (57%), Gaps = 10/430 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ++ L++C  L+A + G  +H         ++  +   LL LY   G I EA Q F++M
Sbjct: 207 TISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEM 266

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIR 211
                   PW+ +IS YA+  + ++A+ L+ +M +  V  P+ FTF  VL+ACA L L+ 
Sbjct: 267 PKDDLI--PWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLN 324

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G ++H   ++ G   + FV NAL+D+YAKCG+I  +  +F     K+ +++N+++ GY+
Sbjct: 325 LGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYV 384

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLRRGVEWDLC 328
             G   +A ++F  M+     P  V  SS+L A+ASL+ +  G Q+H   ++     D  
Sbjct: 385 QLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV 444

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +ANSLI +Y+K G++D A   FD M ++D VSWN++I     H    EAL  F+ M++  
Sbjct: 445 VANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSN 504

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             P+ LTFV +LSAC++ G +  G   F  M++ YGI P +EHY CMV L GR+G  DEA
Sbjct: 505 SKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEA 564

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I E + F+ S +VW ALL AC +H N+ +G+  AQ++ E+EP ++    LL  +Y  
Sbjct: 565 VKLIGE-IPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYAT 623

Query: 506 AGRLDDVERV 515
           A R D+V  V
Sbjct: 624 AKRWDNVAYV 633



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 247/494 (50%), Gaps = 26/494 (5%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           F   P ++    +T  + F ++         + L    + G  V    F +LL+    + 
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRS--HQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMD 118

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
             +  + +H  +     + +  + + L+  Y+  G +D A QVFD +  +   +  W  +
Sbjct: 119 LADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVS--WTGM 176

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           ++ YAE   +ED++ L+ QM   G  P+ FT    LK+C GL   +VG+ VH  A++  +
Sbjct: 177 VACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCY 236

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             D +V  AL+++Y K G+I +A+  F+ +   DLI ++ M++ Y       EA ++F  
Sbjct: 237 DRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCR 296

Query: 286 MILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           M  +    P+    +S+L   A+  LL +G Q+H  VL+ G++ ++ ++N+L+ VY+K G
Sbjct: 297 MRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCG 356

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLS 398
           +++ +  LF    +K+ V+WN+II  + +     +AL  F  M    + P  +T+ S+L 
Sbjct: 357 EIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR 416

Query: 399 ACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           A A L +++ G ++ S+ ++  Y     V +   ++++Y + G ID+A  +  +KM+ + 
Sbjct: 417 ASASLVALEPGRQIHSLTIKTMYNKDSVVAN--SLIDMYAKCGRIDDA-RLTFDKMD-KQ 472

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIKIYGNAGRLDDV 512
             V W AL+    +HG   +G   A  LF++        N+  F  ++    NAG LD  
Sbjct: 473 DEVSWNALICGYSIHG---LG-MEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKG 528

Query: 513 E-RVERMLVDRGLE 525
               + ML D G+E
Sbjct: 529 RAHFKSMLQDYGIE 542



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 198/385 (51%), Gaps = 12/385 (3%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + + ++A++L+   + +    G  LH  I  +    +    + LL  Y  FG +++A ++
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M      +F   +L  G++   +++ A  L  ++  EG E +QF F  +LK    + 
Sbjct: 61  FDEMPLTNTVSFV--TLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMD 118

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           L      VH    + G   D FV  AL+D Y+ CG++  AR VFD I  KD++S+  M+ 
Sbjct: 119 LADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVA 178

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEW 325
            Y  +    ++  +F  M + G+ P+   IS+ L + + L   ++G  VHG  L+   + 
Sbjct: 179 CYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR 238

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQME 382
           DL +  +L+ +Y+K G++ +A   F+ MP+ D++ W+ +I  ++   K  EAL  F +M 
Sbjct: 239 DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR 298

Query: 383 RDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
           +   V+P++ TF S+L ACA L  + +G ++ S ++ K G+   V     ++++Y + G 
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL-KVGLDSNVFVSNALMDVYAKCGE 357

Query: 442 IDEAYSMIVEKMEFEASPVVWGALL 466
           I+ +  +       E + V W  ++
Sbjct: 358 IENSVKLFTGST--EKNEVAWNTII 380



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 172/331 (51%), Gaps = 16/331 (4%)

Query: 46  FSSYPKSS--PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
           F   PK    P  L+ ++ A      +AL+   +  +SSV   +     TFAS+L+ C  
Sbjct: 263 FEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV---VVPNNFTFASVLQACAS 319

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           L  +  G ++H  +    L  N  +S+ L+ +YA  G I+ + ++F   + +   A  WN
Sbjct: 320 LVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA--WN 377

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I GY +LG+ E A+ L+  M    ++P + T+  VL+A A L  +  G ++H   ++ 
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
            +  D  V N+L+DMYAKCG I  AR  FD++  +D +S+N+++ GY  HGL +EA ++F
Sbjct: 438 MYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLF 497

Query: 284 RGMILNGFDPDP---VAISSILANASLLRIG-AQVHGWVLRRGVEWDLCIANSLIVVY-- 337
             M  +   P+    V + S  +NA LL  G A     +   G+E   CI +   +V+  
Sbjct: 498 DMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIE--PCIEHYTCMVWLL 555

Query: 338 SKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
            + G+ D+A  L   +P Q  V+ W +++ A
Sbjct: 556 GRSGQFDEAVKLIGEIPFQPSVMVWRALLGA 586


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 249/453 (54%), Gaps = 9/453 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            E   + G+        +++  C +L A+     +   I     + +  + + ++ +YA 
Sbjct: 119 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 178

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G ++ A ++FD+M  +   +  W+++I+ Y   G+   A+ L+  M   G+ PD+ T  
Sbjct: 179 CGCVESAREIFDRMEEKNVIS--WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLA 236

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +L AC+ L  +++G  +H    +FG   D FV  ALVDMY KC +I  AR +FD++  +
Sbjct: 237 SLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER 296

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           DL+++  M+ GY   G   E+  +F  M   G  PD VA+ +++   A    +     + 
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 356

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
            ++ R+  + D+ +  ++I +++K G ++ A  +FD M +K+V+SW+++I A   H +  
Sbjct: 357 DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR 416

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +AL  F  M R G+LP+ +T VSLL AC+H G V+ G R FS+M E Y +   V+HY C+
Sbjct: 417 KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCV 476

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L GRAG +DEA  +I E M  E    +WGA L AC  H +V + E AA  L EL+P N
Sbjct: 477 VDLLGRAGRLDEALKLI-ESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQN 535

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             ++ LL  IY NAGR +DV +   ++  R L+
Sbjct: 536 PGHYILLSNIYANAGRWEDVAKTRDLMSQRRLK 568



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 219/398 (55%), Gaps = 11/398 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G      T   ++  C  LK ++ G  +H ++    L  +  + + L+ +Y     I
Sbjct: 22  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREI 81

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  +FD+M  R      W  +I GYAE G+  +++ L+ +M EEGV PD+     V+ 
Sbjct: 82  EDARFLFDKMQERDLVT--WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 139

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +     +     R  F  D  +  A++DMYAKCG +  AR +FDR+  K++IS
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVL 319
           +++M+  Y +HG   +A D+FR M+ +G  PD + ++S+L   S L+   +G  +H  V 
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVY 259

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           + G++ D  +  +L+ +Y K  +++ A +LFD MP++D+V+W  +I  +++    +E+L+
Sbjct: 260 KFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLV 319

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M  +GV+PD +  V+++ ACA LG++    R     +++      V     M++++
Sbjct: 320 LFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMH 378

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + G ++ A   I ++ME E + + W A++ A   HG 
Sbjct: 379 AKCGCVESARE-IFDRME-EKNVISWSAMIAAYGYHGQ 414



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 180/312 (57%), Gaps = 17/312 (5%)

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           ++ G+A++G+Y +    + ++   G  PD +T P V++AC  L  +++G  +H    +FG
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
              D FV  ALVDMY KC +I  AR +FD++  +DL+++  M+ GY   G   E+  +F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 285 GMILNGFDPDPVAISSILANASLLRIGAQ-----VHGWVLRRGVEWDLCIANSLIVVYSK 339
            M   G  PD VA+ +++   +  ++GA      +  ++ R+  + D+ +  ++I +Y+K
Sbjct: 121 KMREEGVVPDKVAMVTVVFACA--KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 178

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G ++ A  +FD M +K+V+SW+++I A   H +  +AL  F  M   G+LPD +T  SL
Sbjct: 179 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASL 238

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKME 454
           L AC+ L ++++G RL   +V K+G+   ++H+ C  +V++YG+   I++A   + +KM 
Sbjct: 239 LYACSDLKNLQMG-RLIHHIVYKFGLD--LDHFVCAALVDMYGKCREIEDA-RFLFDKMP 294

Query: 455 FEASPVVWGALL 466
            E   V W  ++
Sbjct: 295 -ERDLVTWTVMI 305


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 255/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T++S+L  C +L  +  G +LH  +    L  +  +   L+ +YA     G +D++ +VF
Sbjct: 58  TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 117

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           +QM      +  W ++I+ YA+ GE + +AI L+ +M    + P+ F+F  VLKAC  L 
Sbjct: 118 EQMPEHNVMS--WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 175

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               GE+V+  AV+ G      V N+L+ MYA+ G +  AR  FD +  K+L+SYN+++ 
Sbjct: 176 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 235

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEW 325
           GY  +    EAF +F  +   G        +S+L+ A+    +  G Q+HG +L+ G + 
Sbjct: 236 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 295

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           + CI N+LI +YS+ G ++ A  +F+ M  ++V+SW S+I   +K      AL  F +M 
Sbjct: 296 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 355

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G  P+ +T+V++LSAC+H+G +  G++ F+ M +++GI PR+EHYACMV+L GR+GL+
Sbjct: 356 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 415

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I   M   A  +VW  LL AC +HGN  +G  AA+ + E EPD+   + LL  +
Sbjct: 416 VEAMEFI-NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 474

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           + +AG+  DV ++ + + +R L
Sbjct: 475 HASAGQWKDVVKIRKSMKERNL 496



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 189/339 (55%), Gaps = 15/339 (4%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A++VFD+M  R      W  +I+ +A+LG   DAI L+  ME  G  PD+FT+  VL AC
Sbjct: 9   AYKVFDKMPERNLVT--WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGNKDLI 261
             LGL+ +G+++H   +R G   D  V  +LVDMYAKC   G +  +R VF+++   +++
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 262 SYNSMLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           S+ +++T Y   G    EA ++F  MI     P+  + SS+L    N S    G QV+ +
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
            ++ G+    C+ NSLI +Y++ G+++ A   FD + +K++VS+N+I+  ++K+    EA
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            + F ++   G+     TF SLLS  A +G++  GE++   ++ K G          +++
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL-KGGYKSNQCICNALIS 305

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +Y R G I+ A+ +  E ME + + + W +++     HG
Sbjct: 306 MYSRCGNIEAAFQVFNE-ME-DRNVISWTSMITGFAKHG 342



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI +   TFASLL     + A+  G ++H  +     + N+ I + L+ +Y+  G I+ 
Sbjct: 256 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 315

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A QVF++M +R   +  W S+I+G+A+ G    A+ ++ +M E G +P++ T+  VL AC
Sbjct: 316 AFQVFNEMEDRNVIS--WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 373

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFV-----LNALVDMYAKCGDIVKA 248
           + +G+I  G+K H +++   +   G V        +VD+  + G +V+A
Sbjct: 374 SHVGMISEGQK-HFNSM---YKEHGIVPRMEHYACMVDLLGRSGLLVEA 418


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 148/408 (36%), Positives = 236/408 (57%), Gaps = 8/408 (1%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           +++ + +KLL L    G I    ++F  +S+  +F F  NSLI   +  G   DA+  Y 
Sbjct: 40  RSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLF--NSLIKASSNFGFSLDAVFFYR 97

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M    + P  +TF  V+KACA L L+R+G  VH      G+  + FV  ALV  YAK  
Sbjct: 98  RMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSC 157

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
               AR VFD +  + +I++NSM++GY  +GL  EA ++F  M  +G +PD     S+L+
Sbjct: 158 TPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLS 217

Query: 304 NASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             S L    +G  +H  ++  G+  ++ +A SL+ ++S+ G + +A  +FD M + +VVS
Sbjct: 218 ACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVS 277

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W ++I     H    EA+  F +M+  GV+P+ +T+V++LSACAH G +  G  +F+ M 
Sbjct: 278 WTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMK 337

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           ++YG+ P VEH+ CMV+++GR GL++EAY  +      E  P VW A+L AC +H N  +
Sbjct: 338 QEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDL 397

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           G   A+ L   EP+N  ++ LL  +Y  AGR+D VE V  +++ RGL+
Sbjct: 398 GVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLK 445



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 177/372 (47%), Gaps = 50/372 (13%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I   T TF S+++ C  L  +  G  +H  +  +    N  + + L+  YA       A 
Sbjct: 104 IVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVAR 163

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VFD+M  R+  A  WNS+ISGY + G   +A+ ++ +M E G EPD  TF  VL AC+ 
Sbjct: 164 KVFDEMPQRSIIA--WNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQ 221

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           LG + +G  +H   V  G   +  +  +LV+M+++CGD+ +AR VFD +   +++S+ +M
Sbjct: 222 LGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAM 281

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRR-- 321
           ++GY  HG  VEA ++F  M   G  P+    VA+ S  A+A L+  G  V   + +   
Sbjct: 282 ISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYG 341

Query: 322 ---GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS--WNSIIHAHSKDHEALI 376
              GVE  +C+ +    ++ + G L++A      +  +++V   W +++           
Sbjct: 342 VVPGVEHHVCMVD----MFGRGGLLNEAYQFVRGLSSEELVPAVWTAML----------- 386

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
                   G    H  F         LG V+V E L S   E  G      HY  + N+Y
Sbjct: 387 --------GACKMHKNF--------DLG-VEVAENLISAEPENPG------HYVLLSNMY 423

Query: 437 GRAGLIDEAYSM 448
             AG +D   S+
Sbjct: 424 ALAGRMDRVESV 435



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 41/310 (13%)

Query: 43  ITTFSSYPKSSPTPLLTNQ--KAFPKTKLQALDSIIQDLESSVQNGITVQ---------- 90
           + TF  Y KS  TP +  +     P+  + A +S+I   E   QNG+  +          
Sbjct: 149 LVTF--YAKSC-TPRVARKVFDEMPQRSIIAWNSMISGYE---QNGLASEAVEVFNKMRE 202

Query: 91  ------TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
                 + TF S+L  C QL +++ G  LH  I    +R N  +++ L+ +++  G +  
Sbjct: 203 SGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGR 262

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VFD M+     +  W ++ISGY   G   +A+ ++ +M+  GV P++ T+  VL AC
Sbjct: 263 ARAVFDSMNEGNVVS--WTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSAC 320

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A  GLI  G  V   +++  +G    V +   +VDM+ + G + +A      + +++L+ 
Sbjct: 321 AHAGLINEGRLV-FASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVP 379

Query: 263 --YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP------VAISSILANASLLRIGAQV 314
             + +ML     H    + FD+   +  N    +P      V +S++ A A  +     V
Sbjct: 380 AVWTAMLGACKMH----KNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESV 435

Query: 315 HGWVLRRGVE 324
              +++RG++
Sbjct: 436 RNVMIQRGLK 445


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 165/514 (32%), Positives = 270/514 (52%), Gaps = 62/514 (12%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           PK  L+    +  +       G      T  ++L  C  L     G +LH    T+ + +
Sbjct: 209 PKVALEMFSRMTNEF------GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ 262

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + L+ +YA  G++DEA+ VF  MS +   +  WN++++GY+++G +EDA+ L+ +
Sbjct: 263 NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS--WNAMVAGYSQIGRFEDAVRLFEK 320

Query: 185 MEEE-----------------------------------GVEPDQFTFPRVLKACAGLGL 209
           M+EE                                   G++P++ T   VL  CA +G 
Sbjct: 321 MQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380

Query: 210 IRVGEKVHLDAVRF-------GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK--DL 260
           +  G+++H  A+++       G G +  V+N L+DMYAKC  +  AR +FD +  K  D+
Sbjct: 381 LMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDV 440

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASL--LRIGAQVH 315
           +++  M+ GY  HG   +A ++   M        P A +   +++A ASL  LRIG Q+H
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500

Query: 316 GWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
            + LR       L ++N LI +Y+K G +  A  +FD+M  K+ V+W S++     H   
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EAL  F++M R G   D +T + +L AC+H G +  G   F+ M   +G+SP  EHYAC
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +V+L GRAG ++ A  +I E+M  E  PVVW A L  C +HG V +GE AA+K+ EL  +
Sbjct: 621 LVDLLGRAGRLNAALRLI-EEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASN 679

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ++ ++ LL  +Y NAGR  DV R+  ++  +G++
Sbjct: 680 HDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVK 713



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 235/521 (45%), Gaps = 93/521 (17%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
           T    TF  + + C ++ +V  G   H L        N  + + L+ +Y+    + +A +
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAG 206
           VFD+MS     +  WNS+I  YA+LG+ + A+ ++ +M  E G  PD  T   VL  CA 
Sbjct: 184 VFDEMSVWDVVS--WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           LG   +G+++H  AV      + FV N LVDMYAKCG + +A TVF  +  KD++S+N+M
Sbjct: 242 LGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAM 301

Query: 267 -----------------------------------LTGYIHHGLLVEAFDIFRGMILNGF 291
                                              ++GY   GL  EA  + R M+ +G 
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW-------DLCIANSLIVVYSKDG 341
            P+ V + S+L   A+   L  G ++H + ++  ++        +  + N LI +Y+K  
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 342 KLDQACWLFDHMP--QKDVVSWNSIIHAHSKDHEA----LIYFEQMERDG-VLPDHLTFV 394
           K+D A  +FD +   ++DVV+W  +I  +S+  +A     +  E  E D    P+  T  
Sbjct: 422 KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--------- 445
             L ACA L ++++G+++ +  +     +  +    C++++Y + G I +A         
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMA 541

Query: 446 ------------YSM---------IVEKME---FEASPVVWGALLYACYLHGNVCMGE-- 479
                       Y M         I ++M    F+   V    +LYAC   G +  G   
Sbjct: 542 KNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601

Query: 480 -TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
               + +F + P  EH +  L+ + G AGRL+   R +E M
Sbjct: 602 FNRMKTVFGVSPGPEH-YACLVDLLGRAGRLNAALRLIEEM 641



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 202/454 (44%), Gaps = 57/454 (12%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T  F    +T  Q+K +       +L+   +L  N  ++S L+  Y + G +  A  +  
Sbjct: 31  TPPFIHKCKTISQVKLIHQ-----KLLSFGILTLN--LTSHLISTYISVGCLSHAVSLLR 83

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +     A  + WNSLI  Y + G     + L+  M      PD +TFP V KAC  +  +
Sbjct: 84  RFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSV 143

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R GE  H  ++  GF  + FV NALV MY++C  +  AR VFD +   D++S+NS++  Y
Sbjct: 144 RCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESY 203

Query: 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWD 326
              G    A ++F  M    G  PD + + ++L   + L    +G Q+H + +   +  +
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQN 263

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---------------- 370
           + + N L+ +Y+K G +D+A  +F +M  KDVVSWN+++  +S+                
Sbjct: 264 MFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQE 323

Query: 371 ----------------------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
                                  +EAL    QM   G+ P+ +T +S+LS CA +G++  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 409 GERLFSVMVEKYGISPRVEHYA-------CMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           G+ +    + KY I  R   +         ++++Y +   +D A +M       E   V 
Sbjct: 384 GKEIHCYAI-KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVT 442

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           W  ++     HG+         ++FE +     N
Sbjct: 443 WTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 247/458 (53%), Gaps = 28/458 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL----------- 141
           +  + L++C  L     G  LH L   +    ++  ++ LL LY                
Sbjct: 53  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSV 112

Query: 142 --------IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
                   ++   +VFD+M  R   +  WN+L+ G AE G + +A+ L  +M  EG  PD
Sbjct: 113 GGTGSSTALESVRKVFDEMIERDVVS--WNTLVLGCAEEGRHHEALVLVRKMWREGFRPD 170

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
            FT   VL   A    ++ G +VH  AVR GF  D FV ++L+DMYA C     +  VFD
Sbjct: 171 SFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFD 230

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
            +  +D I +NS+L G   +G + EA  IFR M+  G  P PV  SS++    N + LR 
Sbjct: 231 NLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRF 290

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G Q+H +V+R G E ++ I++SLI +Y K G++  A  +FD M   DVVSW ++I     
Sbjct: 291 GKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYAL 350

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H    EAL+ FE+ME     P+H+TF+++L+AC+H G V  G + F  M + YGI P +E
Sbjct: 351 HGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLE 410

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           H A + ++ GRAG +DEAY+ I  KM+ + +  VW  LL AC +H N  + E  A+K+ E
Sbjct: 411 HCAALADILGRAGELDEAYNFI-SKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME 469

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LEP +  +  +L  +Y  +GR ++   + + +  +G++
Sbjct: 470 LEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMK 507



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 176/341 (51%), Gaps = 34/341 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--TFPRVLKACAGLGLIRVGEKVHLD 219
           W   I   A  G + DAI+L+ +M            + P  LK+CA LGL  +G  +H  
Sbjct: 17  WAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHAL 76

Query: 220 AVRFGFGFDGFVLNALVDMYAK--CG-----------------DIVKARTVFDRIGNKDL 260
           A+R G   D F  NAL+++Y K  C                   +   R VFD +  +D+
Sbjct: 77  AIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDV 136

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           +S+N+++ G    G   EA  + R M   GF PD   +SS+L   A  + ++ G++VHG+
Sbjct: 137 VSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGF 196

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
            +R G + D+ + +SLI +Y+   + D +  +FD++P +D + WNS++   +++    EA
Sbjct: 197 AVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEA 256

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F +M + GV P  +TF SL+  C +L S++ G++L + ++ + G    V   + +++
Sbjct: 257 LGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI-RGGFEDNVFISSSLID 315

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHG 473
           +Y + G I  A+  I ++M    SP  V W A++    LHG
Sbjct: 316 MYCKCGEISIAHH-IFDRM---CSPDVVSWTAMIMGYALHG 352



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 152/307 (49%), Gaps = 12/307 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G    + T +S+L    +   V+ G ++H     N    +  + S L+ +YA     D
Sbjct: 164 REGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTD 223

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + +VFD +  R      WNS+++G A+ G  E+A+ ++ +M + GV P   TF  ++  
Sbjct: 224 YSVKVFDNLPVRDPIL--WNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPV 281

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L  +R G+++H   +R GF  + F+ ++L+DMY KCG+I  A  +FDR+ + D++S+
Sbjct: 282 CGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSW 341

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR-- 321
            +M+ GY  HG   EA  +F  M L    P+ +   ++L   S    G    GW   +  
Sbjct: 342 TAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS--HAGLVDKGWKYFKSM 399

Query: 322 ----GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHAHSKDHEALI 376
               G+   L    +L  +  + G+LD+A      M  K   S W++++ A  + H+  +
Sbjct: 400 SDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRA-CRVHKNTM 458

Query: 377 YFEQMER 383
             E++ +
Sbjct: 459 LAEEVAK 465



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           P+L N       +  +++  +      +Q G+     TF+SL+  C  L ++  G +LH 
Sbjct: 237 PILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHA 296

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            +       N  ISS L+ +Y   G I  AH +FD+M +    +  W ++I GYA  G  
Sbjct: 297 YVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVS--WTAMIMGYALHGPA 354

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LN 233
            +A+ L+ +ME    +P+  TF  VL AC+  GL+  G K +  ++   +G    +    
Sbjct: 355 REALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWK-YFKSMSDHYGIVPTLEHCA 413

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           AL D+  + G++ +A     ++  K   S  S L
Sbjct: 414 ALADILGRAGELDEAYNFISKMQIKPTASVWSTL 447


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 280/501 (55%), Gaps = 28/501 (5%)

Query: 37  QISRNRITTFSSYPKSSPTPLLTN------QKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           ++ R  +T   SY  +  T LL+       Q+  P+  ++A+DS+         +G+   
Sbjct: 9   KLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRA-MKAMDSL-------QSHGLWAD 60

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + T++ L++ C   +AV  G  + R +  N  R    + + L+ +Y  F L+++AHQ+FD
Sbjct: 61  SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           QM  R   +  W ++IS Y++   ++ A+ L   M  + V P+ +T+  VL++C G+  +
Sbjct: 121 QMPQRNVIS--WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R+   +H   ++ G   D FV +AL+D++AK G+   A +VFD +   D I +NS++ G+
Sbjct: 179 RM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +     A ++F+ M   GF  +   ++S+L      +LL +G Q H  +++   + DL
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 293

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            + N+L+ +Y K G L+ A  +F+ M ++DV++W+++I   +++    EAL  FE+M+  
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  P+++T V +L AC+H G ++ G   F  M + YGI P  EHY CM++L G+AG +D+
Sbjct: 354 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 413

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  ++ E ME E   V W  LL AC +  N+ + E AA+K+  L+P++   + LL  IY 
Sbjct: 414 AVKLLNE-MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472

Query: 505 NAGRLDDVERVERMLVDRGLE 525
           N+ + D VE +   + DRG++
Sbjct: 473 NSQKWDSVEEIRTRMRDRGIK 493


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 280/501 (55%), Gaps = 28/501 (5%)

Query: 37  QISRNRITTFSSYPKSSPTPLLTN------QKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           ++ R  +T   SY  +  T LL+       Q+  P+  ++A+DS+         +G+   
Sbjct: 9   KLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRA-MKAMDSL-------QSHGLWAD 60

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + T++ L++ C   +AV  G  + R +  N  R    + + L+ +Y  F L+++AHQ+FD
Sbjct: 61  SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           QM  R   +  W ++IS Y++   ++ A+ L   M  + V P+ +T+  VL++C G+  +
Sbjct: 121 QMPQRNVIS--WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R+   +H   ++ G   D FV +AL+D++AK G+   A +VFD +   D I +NS++ G+
Sbjct: 179 RM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +     A ++F+ M   GF  +   ++S+L      +LL +G Q H  +++   + DL
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 293

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            + N+L+ +Y K G L+ A  +F+ M ++DV++W+++I   +++    EAL  FE+M+  
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  P+++T V +L AC+H G ++ G   F  M + YGI P  EHY CM++L G+AG +D+
Sbjct: 354 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 413

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  ++ E ME E   V W  LL AC +  N+ + E AA+K+  L+P++   + LL  IY 
Sbjct: 414 AVKLLNE-MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472

Query: 505 NAGRLDDVERVERMLVDRGLE 525
           N+ + D VE +   + DRG++
Sbjct: 473 NSQKWDSVEEIRTRMRDRGIK 493


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 269/487 (55%), Gaps = 31/487 (6%)

Query: 66  KTKLQALDSIIQDLESSVQNGITVQT-------------ETFASLLETCYQLKAVEHGIK 112
           KT + + +S+I DL  S  +   ++               +F   ++ C  L  +  G +
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQ 97

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
            H+       + +  +SS L+ +Y+T G +++A +VFD++  R   +  W S+I GY   
Sbjct: 98  THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS--WTSMIRGYDLN 155

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTF------PRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
           G   DA++L+  +  E  + D   F        V+ AC+ +    + E +H   ++ GF 
Sbjct: 156 GNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFD 215

Query: 227 FDGFVLNALVDMYAKCGD--IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
               V N L+D YAK G+  +  AR +FD+I +KD +SYNS+++ Y   G+  EAFD+FR
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFR 275

Query: 285 GMILNGFDP-DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
            +I       + + +S++L   +++  LRIG  +H  V+R G+E D+ +  S+I +Y K 
Sbjct: 276 RLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G+++ A   FD M  K+V SW ++I     H    +AL  F  M   GV P+++TFVS+L
Sbjct: 336 GRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           +AC+H G   VG   F+ M  ++G+ P +EHY CMV+L GRAG + +AY +I +KM+ E 
Sbjct: 396 AACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI-QKMKMEP 454

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
             ++W +LL AC +H NV + E +  +LFEL+P N   + LL  IY ++GR  DVERV  
Sbjct: 455 DSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRM 514

Query: 518 MLVDRGL 524
            + +RGL
Sbjct: 515 TMKNRGL 521


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 245/434 (56%), Gaps = 12/434 (2%)

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           +C  L  +      H L+    L  +   +  L+ +Y+  G +  A +VFD++  R   +
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184

Query: 160 FPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
             WNS+I+GYA+ G   +A+ ++ +M   +G EPD+ +   VL AC  LG + +G  V  
Sbjct: 185 --WNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEG 242

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             V  G   + ++ +AL+ MYAKCGD+  AR +FD +  +D+I++N++++GY  +G+  E
Sbjct: 243 FVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADE 302

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A  +F  M  +    + + ++++L   A    L +G Q+  +  +RG + D+ +A +LI 
Sbjct: 303 AISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALID 362

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM--ERDGVLPDH 390
           +Y+K G L  A  +F  MPQK+  SWN++I A   H K  EAL  F+ M  E  G  P+ 
Sbjct: 363 MYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPND 422

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFV LLSAC H G V  G RLF +M   +G+ P++EHY+CMV+L  RAG + EA+ +I 
Sbjct: 423 ITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLI- 481

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           EKM  +   V  GALL AC    NV +GE   + + E++P N  N+ +  KIY N    +
Sbjct: 482 EKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWE 541

Query: 511 DVERVERMLVDRGL 524
           D  R+  ++  +G+
Sbjct: 542 DSARMRLLMRQKGI 555



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 187/364 (51%), Gaps = 31/364 (8%)

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
           Y  A+ L+ +M    + P+ FTFP    +CA L ++      H    +     D    ++
Sbjct: 97  YPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHS 156

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM-ILNGFDP 293
           L+ MY++CG +  AR VFD I  +DL+S+NSM+ GY   G   EA ++F  M   +GF+P
Sbjct: 157 LITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEP 216

Query: 294 DPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D +++ S+L        L +G  V G+V+ RG+  +  I ++LI +Y+K G L  A  +F
Sbjct: 217 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIF 276

Query: 351 DHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           D M  +DV++WN++I  ++++    EA+  F  M+ D V  + +T  ++LSACA +G++ 
Sbjct: 277 DGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALD 336

Query: 408 VGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLIDEAYSMIVE-KMEFEASPVVW 462
           +G++     +++Y      +H       ++++Y + G +  A  +  E   + EAS   W
Sbjct: 337 LGKQ-----IDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEAS---W 388

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPD-------NEHNFELLIKIYGNAGRLDDVERV 515
            A++ A   HG        A  LF+   D       N+  F  L+    +AG +++  R+
Sbjct: 389 NAMISALASHGKA----KEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRL 444

Query: 516 ERML 519
             M+
Sbjct: 445 FDMM 448



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 166/349 (47%), Gaps = 47/349 (13%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E   ++G      +  S+L  C +L  +E G  +   +    +  N  I S L+ +YA  
Sbjct: 207 EMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKC 266

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A ++FD M+ R      WN++ISGYA+ G  ++AI+L+  M+E+ V  ++ T   
Sbjct: 267 GDLGSARRIFDGMAARDVIT--WNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTA 324

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL ACA +G + +G+++   A + GF  D FV  AL+DMYAKCG +  A+ VF  +  K+
Sbjct: 325 VLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKN 384

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQV 314
             S+N+M++    HG   EA  +F+ M   G    P     V + S   +A L+  G ++
Sbjct: 385 EASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRL 444

Query: 315 HGWV-----LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
              +     L   +E   C+ + L    ++ G L +A  L + MP+K             
Sbjct: 445 FDMMSTLFGLVPKIEHYSCMVDLL----ARAGHLYEAWDLIEKMPEK------------- 487

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
                             PD +T  +LL AC    +V +GER+  +++E
Sbjct: 488 ------------------PDKVTLGALLGACRSKKNVDIGERVIRMILE 518



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 100/200 (50%), Gaps = 8/200 (4%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I    +  ++ +T    T  ++L  C  + A++ G ++         + +  +++ L
Sbjct: 301 DEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATAL 360

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE--GV 190
           + +YA  G +  A +VF +M  +   +  WN++IS  A  G+ ++A++L+  M +E  G 
Sbjct: 361 IDMYAKCGSLASAQRVFKEMPQKNEAS--WNAMISALASHGKAKEALSLFQCMSDEGGGA 418

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
            P+  TF  +L AC   GL+  G ++  D +   FG    +   + +VD+ A+ G + +A
Sbjct: 419 RPNDITFVGLLSACVHAGLVNEGYRL-FDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEA 477

Query: 249 RTVFDRIGNK-DLISYNSML 267
             + +++  K D ++  ++L
Sbjct: 478 WDLIEKMPEKPDKVTLGALL 497


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 245/460 (53%), Gaps = 10/460 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  +Q +    + GI   + T   +L T  + KA+ HG  LH             + + L
Sbjct: 192 DDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVE 191
           L +YA    +  A ++FD M  R   +  W+++I GY      ++A+ L+ QM  ++ ++
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVS--WSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P   T   VL+ACA L  +  G K+H   ++ G   D  + N L+ MYAKCG I  A   
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRF 369

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LL 308
           FD +  KD +S++++++G + +G    A  IFR M L+G DPD   +  +L   S    L
Sbjct: 370 FDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAAL 429

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           + G   HG+++ RG   D  I N+LI +YSK GK+  A  +F+ M + D+VSWN++I   
Sbjct: 430 QHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGY 489

Query: 368 --HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
             H    EAL  F  +   G+ PD +TF+ LLS+C+H G V  G   F  M   + I PR
Sbjct: 490 GIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPR 549

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +EH  CMV++ GRAGLIDEA+  I   M FE    +W ALL AC +H N+ +GE  ++K+
Sbjct: 550 MEHCICMVDILGRAGLIDEAHHFI-RNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 608

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L P++  NF LL  IY  AGR DD   +     D GL+
Sbjct: 609 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 648



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 241/507 (47%), Gaps = 45/507 (8%)

Query: 53  SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIK 112
           +P+ +L NQ           D  I    S +  G+     T+  +L+ C  L A+E G++
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           +H       L  +  + + L+  YA  G++ EA ++F  MS+R   A  WN++I+G +  
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA--WNAMIAGCSLY 188

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G  +DA+ L  QM+EEG+ P+  T   VL        +  G+ +H   VR  F     V 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL-NGF 291
             L+DMYAKC  ++ AR +FD +G ++ +S+++M+ GY+    + EA ++F  MIL +  
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAM 308

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           DP PV + S+L   A  + L  G ++H ++++ G   D+ + N+L+ +Y+K G +D A  
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
            FD M  KD VS+++I+    ++     AL  F  M+  G+ PD  T + +L AC+HL +
Sbjct: 369 FFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 406 VKVG---------------ERLFSVMVEKYGISPRVE---------------HYACMVNL 435
           ++ G                 + + +++ Y    ++                 +  M+  
Sbjct: 429 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 488

Query: 436 YGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGE---TAAQKLFELEP 490
           YG  GL  EA  +  + +     P  + +  LL +C   G V  G     A  + F + P
Sbjct: 489 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVP 548

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVER 517
             EH    ++ I G AG +D+     R
Sbjct: 549 RMEHCI-CMVDILGRAGLIDEAHHFIR 574



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 212/409 (51%), Gaps = 14/409 (3%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
             +  LLE C Q K++    K+H+    N    +  +  KL RLY +   +  A ++FD+
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + N +     WN +I  YA  G ++ AI LY  M   GV P+++T+P VLKAC+GL  I 
Sbjct: 69  IPNPSVIL--WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G ++H  A  FG   D FV  ALVD YAKCG +V+A+ +F  + ++D++++N+M+ G  
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +GL  +A  +   M   G  P+   I  +L     A  L  G  +HG+ +RR  +  + 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERD 384
           +   L+ +Y+K   L  A  +FD M  ++ VSW+++I  +       EAL  F+QM  +D
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKD 306

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + P  +T  S+L ACA L  +  G +L   ++ K G    +     ++++Y + G+ID+
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII-KLGSVLDILLGNTLLSMYAKCGVIDD 365

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGN--VCMGETAAQKLFELEPD 491
           A     E    ++  V + A++  C  +GN  V +      +L  ++PD
Sbjct: 366 AIRFFDEMNPKDS--VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 255/444 (57%), Gaps = 11/444 (2%)

Query: 89   VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
            V + T +SLL  C  + + + G  +H  +    ++ N  I S LL +Y   G  ++A  V
Sbjct: 748  VDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSV 807

Query: 149  FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
            F  M  R   A  W S+I+G+ +   ++DA+ L+  ME+EGV+ D      V+ A  GL 
Sbjct: 808  FYTMKERDVVA--WGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLE 865

Query: 209  LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
             + +G  +H  A++ G   D FV  +LVDMY+K G    A  VF  + NK+L+++NSM++
Sbjct: 866  NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMIS 925

Query: 269  GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVE 324
             Y  +GL   + ++   ++ +GF  D V+I+++L      A+LL+ G  +H + +R  + 
Sbjct: 926  CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLK-GKTLHAYQIRLQIP 984

Query: 325  WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQM 381
             DL + N+LI +Y K G L  A  +F++MP++++V+WNS+I    +H    EA+  F++M
Sbjct: 985  SDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEM 1044

Query: 382  ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            +R    PD +TF++L+++C+H G V+ G  LF +M  +YG+ PR+EHYA +V+L GRAG 
Sbjct: 1045 KRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGR 1104

Query: 442  IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
            +D+AYS I   M  +A   VW  LL+AC  H N+ +GE  A  L ++EP    N+  L+ 
Sbjct: 1105 LDDAYSFI-RGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLN 1163

Query: 502  IYGNAGRLDDVERVERMLVDRGLE 525
            +YG     D    +   +  RGL+
Sbjct: 1164 LYGEVEMWDRAANLRASMKGRGLK 1187



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 203/397 (51%), Gaps = 21/397 (5%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            + +T    TF SLL+TC  L  + HG  +H  I T  L+ +  I++ L+ +Y   GL+ 
Sbjct: 434 HSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLG 493

Query: 144 EAHQVFDQMSNRTAFA---FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            A QVFD+MS     A     WN +I GY + G +E+ +A + +M+E G+ PD ++   V
Sbjct: 494 SALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIV 553

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-D 259
           L  C  L     G ++H   +R  F  D ++  AL+ MY+ C   ++A ++F ++ N+ +
Sbjct: 554 LGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSN 613

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFR-------GMILNGFDPDPVAISSILANASLLRIGA 312
           ++++N M+ G++ +G+  ++ +++         ++   F     A S    +  +L  G 
Sbjct: 614 IVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS----HGEVLDFGR 669

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           QVH  V++   + D  +  SL+ +Y+K G ++ A  +FD +  K+V   N++I A   + 
Sbjct: 670 QVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNG 729

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           + ++AL  + +M+      D  T  SLLS C+ +GS   G R     V K  +   V   
Sbjct: 730 RAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG-RTVHAEVIKRSMQSNVAIQ 788

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           + ++ +Y + G  ++A S+     E +   V WG+++
Sbjct: 789 SALLTMYYKCGSTEDADSVFYTMKERDV--VAWGSMI 823



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 200/395 (50%), Gaps = 19/395 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     + + +L  C +L     G ++H  I  N+   +  + + L+ +Y++     EA
Sbjct: 542 GIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEA 601

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F ++ NR+     WN +I G+ E G +E ++ LY   + E  +    +F     AC+
Sbjct: 602 WSLFGKLENRSNIV-AWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 660

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              ++  G +VH D ++  F  D +V  +L+ MYAK G +  A+ VFD++ +K++   N+
Sbjct: 661 HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNA 720

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
           M++ +I +G   +A  ++  M       D   ISS+L+  S++     G  VH  V++R 
Sbjct: 721 MISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRS 780

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFE 379
           ++ ++ I ++L+ +Y K G  + A  +F  M ++DVV+W S+I    ++    +AL  F 
Sbjct: 781 MQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFR 840

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            ME++GV  D     S++SA   L +V++G  +    + K G+   V     +V++Y + 
Sbjct: 841 AMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAI-KRGLESDVFVACSLVDMYSKF 899

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACY 470
           G  + A      +M F + P    V W +++ +CY
Sbjct: 900 GFAESA------EMVFSSMPNKNLVAWNSMI-SCY 927



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 142/294 (48%), Gaps = 17/294 (5%)

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           I    + G+Y  A+ L+ +     +   +FTFP +LK CA L  +  G  +H   V  G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-----DLISYNSMLTGYIHHGLLVEAF 280
             D ++  +L++MY KCG +  A  VFD++        D+  +N ++ GY  +G   E  
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 281 DIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVY 337
             F  M   G  PD  ++S +L   + L     G Q+HG+++R   E D  +  +LI +Y
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 592

Query: 338 SKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
           S   +  +A  LF  +  + ++V+WN +I    ++    ++L  +   + +       +F
Sbjct: 593 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 652

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC--MVNLYGRAGLIDEA 445
               +AC+H   +  G ++   +++   ++ + + Y C  ++ +Y ++G +++A
Sbjct: 653 TGAFTACSHGEVLDFGRQVHCDVIK---MNFQDDPYVCTSLLTMYAKSGSVEDA 703


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 246/463 (53%), Gaps = 11/463 (2%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           LQAL    Q L    ++G      TF   L++C  L     G + H  I          +
Sbjct: 22  LQALSLYPQML----RHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFV 77

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            + L+ +Y    L+D A +VF++  +       +N+L+SGY    +  DA+ L+ QM EE
Sbjct: 78  QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEE 137

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV  +  T   ++ AC     + +G  +H   +++GF  D  V+N  + MY KCG +  A
Sbjct: 138 GVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYA 197

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANA 305
           + +FD +  K LIS+N+M++GY  +GL     +++R M +NG  PDPV +  +L   AN 
Sbjct: 198 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 257

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
               +G +V   +   G   +  + N+LI +Y++ G L +A  +FD MP++ +VSW +II
Sbjct: 258 GAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAII 317

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                H     A+  F++M R G+ PD   FV +LSAC+H G    G   F +M   Y +
Sbjct: 318 GGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQL 377

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
            P  EHY+CMV+L GRAG + EA ++I E M  +    VWGALL AC +H NV + E A 
Sbjct: 378 EPGPEHYSCMVDLLGRAGRLKEAQTLI-ESMPIKPDGAVWGALLGACKIHKNVELAELAF 436

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +++ ELEP+N   + LL  IY NA     V R+  M+ ++ L+
Sbjct: 437 ERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 479



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 198/385 (51%), Gaps = 33/385 (8%)

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            A + PWN+ +   A+  ++  A++LY QM   G  P+ FTFP  LK+CA L L  +G +
Sbjct: 2   NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQ 61

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHH 273
            H    + G  F+ FV   L+ MY K   +  AR VF+      K  + YN++++GY+ +
Sbjct: 62  FHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSN 121

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
               +A  +FR M   G   + V +  ++    +   L +G+ +H   L+ G + D+ + 
Sbjct: 122 SKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVV 181

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIYFEQMERDGVL 387
           N  I +Y K G ++ A  LFD MP K ++SWN+++  ++++  A   L  +  M+ +GV 
Sbjct: 182 NCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVH 241

Query: 388 PDHLTFVSLLSACAHLGSVKVGERL-FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           PD +T V +LS+CA+LG+  VG  + F +    +  +P + +   ++N+Y R G + +A 
Sbjct: 242 PDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQ 299

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIK 501
           + + + M  E + V W A++    +HG+   GE A Q   E+     EPD    F  ++ 
Sbjct: 300 A-VFDGMP-ERTLVSWTAIIGGYGMHGH---GEIAVQLFKEMIRSGIEPDGTA-FVCVLS 353

Query: 502 IYGNAGRLDDVERVERMLVDRGLEF 526
              +AG           L D+GLE+
Sbjct: 354 ACSHAG-----------LTDQGLEY 367


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 163/525 (31%), Positives = 280/525 (53%), Gaps = 51/525 (9%)

Query: 44  TTFSSYPKSSP-TPLLTNQKAFPKT-----KLQALDSIIQDLESSVQNGITVQTETFASL 97
           T F S  K +   P L N K F +      +   L   +Q L    +   +V    +++L
Sbjct: 21  TFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASV----YSTL 76

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           +++C + + ++ G K+H+ I  +       I ++LL +YA    + ++ ++FD+M  R  
Sbjct: 77  IQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDL 136

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEE------------------------------ 187
            +  WN LISGYA++G  ++A +L+ +M E                              
Sbjct: 137 CS--WNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMK 194

Query: 188 --EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
             +  + ++FT    L A A +  +R+G+++H   +R G   D  V +AL DMY KCG I
Sbjct: 195 RSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSI 254

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
            +AR +FD++ ++D++++ +M+  Y   G   E FD+F  ++ +G  P+    S +L   
Sbjct: 255 EEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNAC 314

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           AN +   +G +VHG++ R G +     A++L+ +YSK G +  A  +F   PQ D+ SW 
Sbjct: 315 ANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWT 374

Query: 363 SIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           S+I  ++++    EA+ YFE + + G  PDH+TFV +LSACAH G V  G   F  + E+
Sbjct: 375 SLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQ 434

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           YG++   +HYAC+++L  R+G  DEA + I+ KM  +    +W +LL  C +HGN+ + +
Sbjct: 435 YGLTHTADHYACIIDLLARSGQFDEAEN-IISKMSMKPDKFLWASLLGGCRIHGNLKLAQ 493

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            AA+ LFE+EP+N   +  L  IY  AG   +V ++ + + DRG+
Sbjct: 494 RAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGV 538



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 182/384 (47%), Gaps = 71/384 (18%)

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           +P    +  ++++C    L++ G+KVH      GF    F+LN L++MYAKC  ++ ++ 
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 251 VFDRIGNKDLISYN-------------------------------SMLTGYIHHGLLVEA 279
           +FD +  +DL S+N                               +M++GY+ H    EA
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 280 FDIFRGMIL-NGFDPDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
            ++FR M   +    +   +SS     A    LRIG ++HG+++R G++ D  + ++L  
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLT 392
           +Y K G +++A  +FD M  +D+V+W ++I  + +D    E    F  + R G+ P+  T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           F  +L+ACA+  S ++G+++   M  + G  P     + +V++Y + G      +M+  +
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMT-RVGFDPFSFAASALVHMYSKCG------NMVSAE 359

Query: 453 MEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFEL------EPDNEHNFELLIKI 502
             F+ +P      W +L+     +G        A + FEL      +PD+   F  ++  
Sbjct: 360 RVFKETPQPDLFSWTSLIAGYAQNGQ----PDEAIRYFELLVKSGTQPDHI-TFVGVLSA 414

Query: 503 YGNAGRLDDVERVERMLVDRGLEF 526
             +AG           LVD+GL++
Sbjct: 415 CAHAG-----------LVDKGLDY 427


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 245/460 (53%), Gaps = 10/460 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  +Q +    + GI   + T   +L T  + KA+ HG  LH             + + L
Sbjct: 192 DDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVE 191
           L +YA    +  A ++FD M  R   +  W+++I GY      ++A+ L+ QM  ++ ++
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVS--WSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P   T   VL+ACA L  +  G K+H   ++ G   D  + N L+ MYAKCG I  A   
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRF 369

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LL 308
           FD +  KD +S++++++G + +G    A  IFR M L+G DPD   +  +L   S    L
Sbjct: 370 FDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAAL 429

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           + G   HG+++ RG   D  I N+LI +YSK GK+  A  +F+ M + D+VSWN++I   
Sbjct: 430 QHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGY 489

Query: 368 --HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
             H    EAL  F  +   G+ PD +TF+ LLS+C+H G V  G   F  M   + I PR
Sbjct: 490 GIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPR 549

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +EH  CMV++ GRAGLIDEA+  I   M FE    +W ALL AC +H N+ +GE  ++K+
Sbjct: 550 MEHCICMVDILGRAGLIDEAHHFI-RNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 608

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L P++  NF LL  IY  AGR DD   +     D GL+
Sbjct: 609 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 648



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/514 (27%), Positives = 243/514 (47%), Gaps = 47/514 (9%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           F   P  +P+ +L NQ           D  I    S +  G+     T+  +L+ C  L 
Sbjct: 66  FDEIP--NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLL 123

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           A+E G+++H       L  +  + + L+  YA  G++ EA ++F  MS+R   A  WN++
Sbjct: 124 AIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA--WNAM 181

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           I+G +  G  +DA+ L  QM+EEG+ P+  T   VL        +  G+ +H   VR  F
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
                V   L+DMYAKC  ++ AR +FD +G ++ +S+++M+ GY+    + EA ++F  
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 286 MIL-NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           MIL +  DP PV + S+L   A  + L  G ++H ++++ G   D+ + N+L+ +Y+K G
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCG 361

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLS 398
            +D A   FD M  KD VS+++I+    ++     AL  F  M+  G+ PD  T + +L 
Sbjct: 362 VIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 399 ACAHLGSVKVG---------------ERLFSVMVEKYGISPRVE---------------H 428
           AC+HL +++ G                 + + +++ Y    ++                 
Sbjct: 422 ACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVS 481

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGE---TAAQ 483
           +  M+  YG  GL  EA  +  + +     P  + +  LL +C   G V  G     A  
Sbjct: 482 WNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMS 541

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           + F + P  EH    ++ I G AG +D+     R
Sbjct: 542 RDFSIVPRMEHCI-CMVDILGRAGLIDEAHHFIR 574



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 213/409 (52%), Gaps = 14/409 (3%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
             +  LLE C Q K++    K+H+    N    +  +  KL RLY +   +  A ++FD+
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + N +     WN +I  YA  G ++ AI LY  M   GV P+++T+P VLKAC+GL  I 
Sbjct: 69  IPNPSVIL--WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G ++H  A  FG   D FV  ALVD YAKCG +V+A+ +F  + ++D++++N+M+ G  
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +GL  +A  +   M   G  P+   I  +L     A  L  G  +HG+ +RR  +  + 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERD 384
           +   L+ +Y+K   L  A  +FD M  ++ VSW+++I  +       EAL  F+QM  +D
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + P  +T  S+L ACA L  +  G +L   ++ K G    +     ++++Y + G+ID+
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII-KLGXVLDILLGNTLLSMYAKCGVIDD 365

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGN--VCMGETAAQKLFELEPD 491
           A     + M  + S V + A++  C  +GN  V +      +L  ++PD
Sbjct: 366 AIRFF-DXMNPKDS-VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 256/446 (57%), Gaps = 14/446 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T +++++ C +L  ++ G   H ++       N  I+S L+ ++     +D+A
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 274

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKAC 204
            Q+FD++    A    W S+IS       +++A+  ++ M+ + G+ PD FTF  VL AC
Sbjct: 275 RQLFDELLEPDAIC--WTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 332

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG ++ G++VH   +  GF  +  V ++LVDMY KCG + +++ +FDR+  K+ +S++
Sbjct: 333 GNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWS 392

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++L GY  +G       IFR M       D     +IL   A  + +R G +VH   +R+
Sbjct: 393 ALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK 448

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ + ++L+ +Y+K G ++ A  +FD MP +++++WNS+I   +++    EAL  F
Sbjct: 449 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 508

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM ++G+ PD+++F+ +L AC+H G V  G   F  M + YGI   +EHY+CMV+L GR
Sbjct: 509 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 568

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL++EA  +++E  +F     +W ALL AC    N  + E  A+++ ELEPD   ++ L
Sbjct: 569 AGLLEEA-EILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVL 627

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  +Y   GR +D  R+ R++ DRG+
Sbjct: 628 LANVYKAVGRWNDALRIRRLMKDRGV 653



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 217/425 (51%), Gaps = 33/425 (7%)

Query: 60  NQKAFPK----TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           N   F K     K   L   +Q L+S     I+ +   +ASLL+TC ++ A  HG+++H 
Sbjct: 83  NTNPFSKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHA 142

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
            +  + L  ++ + + LL LY   G    E  +VFD +  +   +  W S+ISGY  +G+
Sbjct: 143 HVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVIS--WTSMISGYVRVGK 200

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG--FVL 232
             +++ L+++M   GVEP+ FT   V+KAC+ LG +++G   H   V  G GFD    + 
Sbjct: 201 PMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFH--GVVLGRGFDSNYVIA 258

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GF 291
           +AL+DM+ +   +  AR +FD +   D I + S+++    +    EA   F  M  + G 
Sbjct: 259 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 318

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD     ++L    N   L+ G +VH  V+  G   ++ + +SL+ +Y K G + ++  
Sbjct: 319 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 378

Query: 349 LFDHMPQKDVVSWNSII--HAHSKDHEALI-YFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +FD MP K+ VSW++++  +  + D +++I  F +ME+     D   F ++L  CA L +
Sbjct: 379 IFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAA 434

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----V 461
           V+ G+ +    + K G    +   A +V+LY + G I+ A ++      F+  PV     
Sbjct: 435 VRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTI------FDQMPVRNLIT 487

Query: 462 WGALL 466
           W +++
Sbjct: 488 WNSMI 492


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  271 bits (692), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 255/447 (57%), Gaps = 11/447 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+   + T +S+L    +L   + G+++H       +  +  IS+ L+ +YA  G  
Sbjct: 334 IDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSS 393

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A  +F++M  R   +  WN++I+ +A      +A+ L  QM+ +G  P+  TF  VL 
Sbjct: 394 RIASTIFNKMGVRNIVS--WNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLP 451

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG + VG+++H   +R G   D FV NAL DMY+KCG +  A+ VF+ I  +D +S
Sbjct: 452 ACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVS 510

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANASLLRIGAQVHGWVL 319
           YN ++ GY      +E+  +F  M L G  PD V+   + S  AN + +R G ++HG ++
Sbjct: 511 YNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLV 570

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALI 376
           R+     L +ANSL+ +Y++ G++D A  +F  +  KDV SWN++I  +    E   A+ 
Sbjct: 571 RKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAIN 630

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M+ DGV  D ++FV++LSAC+H G ++ G + F +M +   I P   HYACMV+L 
Sbjct: 631 LFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCD-LNIEPTHTHYACMVDLL 689

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAGL++EA  +I   +       +WGALL AC +HGN+ +G  AA+ LFEL+P +   +
Sbjct: 690 GRAGLMEEAADLI-RGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYY 748

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523
            LL  +Y  A R D+  +V  ++  RG
Sbjct: 749 ILLSNMYAEAERWDEANKVRELMKSRG 775



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 240/479 (50%), Gaps = 45/479 (9%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFG 140
           + + GI     T  S+L  C + +       +H   +   LL  +  + + L+ +Y   G
Sbjct: 231 AAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCG 290

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
               + +VFD++  R   +  WN++I+ ++  G+Y DA+ ++  M +EG+ P+  T   +
Sbjct: 291 SEKASKKVFDEIDERNVIS--WNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSM 348

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L     LGL ++G +VH  +++     D F+ N+L+DMYAK G    A T+F+++G +++
Sbjct: 349 LPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNI 408

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           +S+N+M+  +  + L  EA ++ R M   G  P+ V  +++L   A    L +G ++H  
Sbjct: 409 VSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHAR 468

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EA 374
           ++R G   DL ++N+L  +YSK G L+ A  +F+ +  +D VS+N +I  +S+ +   E+
Sbjct: 469 IIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLES 527

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--------------- 419
           L  F +M   G+ PD ++F+ ++SACA+L  ++ G+ +  ++V K               
Sbjct: 528 LRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDL 587

Query: 420 --------------YGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKME--FEASPVVW 462
                         Y I  + V  +  M+  YG  G +D A ++     E   E   V +
Sbjct: 588 YTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSF 647

Query: 463 GALLYACYLHGNVCMGETAAQKLFEL--EPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            A+L AC   G +  G    + + +L  EP + H +  ++ + G AG +++   + R L
Sbjct: 648 VAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTH-YACMVDLLGRAGLMEEAADLIRGL 705



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 193/413 (46%), Gaps = 25/413 (6%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           P TK     S      +S+Q           +L +T  Q K V     LH  +P     +
Sbjct: 17  PLTKNTHFSSF---FSTSLQTSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLP-----R 68

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           +  + + L+  YA+FG    +  +F      +  AF WN+LI   +  G + D    Y  
Sbjct: 69  SVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVF-DGFGTYNT 127

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M   GV+PD+ T+P VLK C+    +R G +VH  A + GF  D FV N L+  Y  CG 
Sbjct: 128 MVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGL 187

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN--GFDPDPVAISSIL 302
              A  VFD +  +D +S+N+++     HG   EA   FR M+    G  PD V + S+L
Sbjct: 188 FGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVL 247

Query: 303 ---ANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
              A      +   VH + L+ G +   + + N+L+ VY K G    +  +FD + +++V
Sbjct: 248 PVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNV 307

Query: 359 VSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL--F 413
           +SWN+II + S   K  +AL  F  M  +G+ P+ +T  S+L     LG  K+G  +  F
Sbjct: 308 ISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGF 367

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           S+   K  I   V     ++++Y ++G      S I  KM    + V W A++
Sbjct: 368 SL---KMAIESDVFISNSLIDMYAKSG-SSRIASTIFNKMGVR-NIVSWNAMI 415


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  271 bits (692), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 246/463 (53%), Gaps = 11/463 (2%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           LQAL    Q L    ++G      TF   L++C  L     G + H  I          +
Sbjct: 31  LQALSLYPQML----RHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFV 86

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            + L+ +Y    L+D A +VF++  +       +N+L+SGY    +  +A+ L+ QM EE
Sbjct: 87  QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEE 146

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV  +  T   ++ AC     + +G  +H   +++GF  D  V+N  + MY KCG +  A
Sbjct: 147 GVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYA 206

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANA 305
           + +FD +  K LIS+N+M++GY  +GL     +++R M +NG  PDPV +  +L   AN 
Sbjct: 207 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 266

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
               +G +V   +   G   +  + N+LI +Y++ G L +A  +FD MP++ +VSW +II
Sbjct: 267 GAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAII 326

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                H     A+  F++M R G+ PD   FV +LSAC+H G    G   F +M   Y +
Sbjct: 327 GGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQL 386

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
            P  EHY+CMV+L GRAG + EA ++I E M  +    VWGALL AC +H NV + E A 
Sbjct: 387 EPGPEHYSCMVDLLGRAGRLKEAQTLI-ESMPIKPDGAVWGALLGACKIHKNVELAELAF 445

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +++ ELEP+N   + LL  IY NA     V R+  M+ ++ L+
Sbjct: 446 ERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 488



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 198/385 (51%), Gaps = 33/385 (8%)

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            A + PWN+ +   A+  ++  A++LY QM   G  P+ FTFP  LK+CA L L  +G +
Sbjct: 11  NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQ 70

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHH 273
            H    + G  F+ FV   L+ MY K   +  AR VF+      K  + YN++++GY+ +
Sbjct: 71  FHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSN 130

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
               EA  +FR M   G   + V +  ++    +   L +G+ +H   L+ G + D+ + 
Sbjct: 131 SKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVV 190

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIYFEQMERDGVL 387
           N  I +Y K G ++ A  LFD MP K ++SWN+++  ++++  A   L  +  M+ +GV 
Sbjct: 191 NCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVH 250

Query: 388 PDHLTFVSLLSACAHLGSVKVGERL-FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           PD +T V +LS+CA+LG+  VG  + F +    +  +P + +   ++N+Y R G + +A 
Sbjct: 251 PDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQ 308

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIK 501
           + + + M  E + V W A++    +HG+   GE A Q   E+     EPD    F  ++ 
Sbjct: 309 A-VFDGMP-ERTLVSWTAIIGGYGMHGH---GEIAVQLFKEMIRSGIEPDGTA-FVCVLS 362

Query: 502 IYGNAGRLDDVERVERMLVDRGLEF 526
              +AG           L D+GLE+
Sbjct: 363 ACSHAG-----------LTDQGLEY 376


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 260/462 (56%), Gaps = 16/462 (3%)

Query: 76  IQDLESSVQ-------NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           I DL  S +        GI     T+  +L TC     +E G ++H L   N    +  +
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           S  L+ +Y+ +G +D+A ++ + +  R   +  W S+I+GY +    E+A+A + +M++ 
Sbjct: 384 SGVLIDMYSKYGCLDKARKILEMLEKRDVVS--WTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV PD         ACAG+  +R G ++H      G+  D  + N LV++YA+CG   +A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANA 305
            ++F  I +KD I++N +++G+    L  +A  +F  M   G   +    ++  S LAN 
Sbjct: 502 FSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           + ++ G QVHG  ++ G   +  +AN+LI +Y K G ++ A  +F  M  ++ VSWN+II
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTII 621

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
            +   H +  EAL  F+QM+++G+ P+ +TF+ +L+AC+H+G V+ G   F  M   YG+
Sbjct: 622 TSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGL 681

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +P  +HYAC+V++ GRAG +D A    V++M   A+ ++W  LL AC +H N+ +GE AA
Sbjct: 682 NPIPDHYACVVDILGRAGQLDRA-RRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA 740

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + L ELEP +  ++ LL   Y   G+  + ++V +M+ DRG+
Sbjct: 741 KHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGI 782



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 211/395 (53%), Gaps = 11/395 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T ASLL  C  +  ++ G +LH  +    +  +      LL LY   G I+ 
Sbjct: 239 SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIET 298

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH +F+ + +RT     WN ++  Y ++ +   +  ++ QM+  G+ P+QFT+P +L+ C
Sbjct: 299 AHDIFN-LGDRTNVVL-WNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
              G I +GE++H  +++ GF  D +V   L+DMY+K G + KAR + + +  +D++S+ 
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT 416

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI---SSILANASLLRIGAQVHGWVLRR 321
           SM+ GY+ H    EA   F+ M   G  PD + +   +S  A    +R G Q+H  V   
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS 476

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G   D+ I N+L+ +Y++ G+ ++A  LF  +  KD ++WN +I    +     +AL+ F
Sbjct: 477 GYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVF 536

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M + G   +  TF+S +SA A+L  +K G+++    V K G +   E    +++LYG+
Sbjct: 537 MKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV-KTGHTSETEVANALISLYGK 595

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            G I++A  MI  +M    + V W  ++ +C  HG
Sbjct: 596 CGSIEDA-KMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 198/381 (51%), Gaps = 15/381 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM- 152
            +S+L  C + K    G  +H  +          + + L+ LY  FG    A +VF  M 
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML 206

Query: 153 -SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
             +R  F    N+LISG+A+ G  E A+ ++ +M+  G+ PD  T   +L ACA +G ++
Sbjct: 207 FCDRVTF----NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H   ++ G  FD     +L+D+Y KCGDI  A  +F+     +++ +N ML  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
               L ++F+IF  M   G  P+      IL   +    + +G Q+H   ++ G E D+ 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           ++  LI +YSK G LD+A  + + + ++DVVSW S+I     H    EAL  F++M+  G
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD++   S  SACA + +++ G ++ +  V   G +  +  +  +VNLY R G  +EA
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHA-RVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 446 YSMIVEKMEFEASPVVWGALL 466
           +S+  E +E +   + W  L+
Sbjct: 502 FSLFRE-IEHK-DEITWNGLI 520



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 203/393 (51%), Gaps = 19/393 (4%)

Query: 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
           +++H       L  ++ I + L+ LYA  GL+ +A QVF ++S+R   +  W +++SGYA
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVS--WVAMLSGYA 120

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           + G  ++A  LY QM    V P  +    VL AC    L   G  +H    +  F  + F
Sbjct: 121 QSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V NAL+ +Y   G    A  VF  +   D +++N++++G+   G    A  IF  M L+G
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 291 FDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
             PD V ++S+LA  +    L+ G Q+H ++L+ G+ +D     SL+ +Y K G ++ A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSLLSACAHLG 404
            +F+   + +VV WN ++ A+ +  +    FE   QM+  G+ P+  T+  +L  C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            +++GE++ S+ + K G    +     ++++Y + G +D+A   I+E +E +   V W +
Sbjct: 361 QIELGEQIHSLSI-KNGFESDMYVSGVLIDMYSKYGCLDKARK-ILEMLE-KRDVVSWTS 417

Query: 465 LLYACYLHGNVCMGETAAQKLFELE-----PDN 492
           ++ A Y+  + C  E A     E++     PDN
Sbjct: 418 MI-AGYVQHDFC--EEALATFKEMQDCGVWPDN 447


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 256/446 (57%), Gaps = 14/446 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T +++++ C +L  ++ G   H ++       N  I+S L+ ++     +D+A
Sbjct: 156 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 215

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKAC 204
            Q+FD++    A    W S+IS       +++A+  ++ M+ + G+ PD FTF  VL AC
Sbjct: 216 RQLFDELLEPDAIC--WTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 273

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG ++ G++VH   +  GF  +  V ++LVDMY KCG + +++ +FDR+  K+ +S++
Sbjct: 274 GNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWS 333

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++L GY  +G       IFR M       D     +IL   A  + +R G +VH   +R+
Sbjct: 334 ALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK 389

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ + ++L+ +Y+K G ++ A  +FD MP +++++WNS+I   +++    EAL  F
Sbjct: 390 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 449

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM ++G+ PD+++F+ +L AC+H G V  G   F  M + YGI   +EHY+CMV+L GR
Sbjct: 450 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 509

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL++EA  +++E  +F     +W ALL AC    N  + E  A+++ ELEPD   ++ L
Sbjct: 510 AGLLEEA-EILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVL 568

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  +Y   GR +D  R+ R++ DRG+
Sbjct: 569 LANVYKAVGRWNDALRIRRLMKDRGV 594



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 221/436 (50%), Gaps = 33/436 (7%)

Query: 49  YPKSSPTPLLTNQKAFPK----TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           Y   +P  L  N   F K     K   L   +Q L+S     I+ +   +ASLL+TC ++
Sbjct: 13  YSLLTPLNLSDNTNPFSKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKV 72

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWN 163
            A  HG+++H  +  + L  ++ + + LL LY   G    E  +VFD +  +   +  W 
Sbjct: 73  LAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVIS--WT 130

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           S+ISGY  +G+  +++ L+++M   GVEP+ FT   V+KAC+ LG +++G   H   V  
Sbjct: 131 SMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFH--GVVL 188

Query: 224 GFGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           G GFD    + +AL+DM+ +   +  AR +FD +   D I + S+++    +    EA  
Sbjct: 189 GRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALR 248

Query: 282 IFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            F  M  + G  PD     ++L    N   L+ G +VH  V+  G   ++ + +SL+ +Y
Sbjct: 249 FFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMY 308

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHEALI-YFEQMERDGVLPDHLTFV 394
            K G + ++  +FD MP K+ VSW++++  +  + D +++I  F +ME+     D   F 
Sbjct: 309 GKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFG 364

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           ++L  CA L +V+ G+ +    + K G    +   A +V+LY + G I+ A ++      
Sbjct: 365 TILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTI------ 417

Query: 455 FEASPV----VWGALL 466
           F+  PV     W +++
Sbjct: 418 FDQMPVRNLITWNSMI 433


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 275/508 (54%), Gaps = 22/508 (4%)

Query: 37  QISRNRITTFSSYPKSSPTPL----LTNQKAFPKTKLQALDSIIQDLES--SVQNGITVQ 90
            +S N   + +    S+PT L    L N      +K   LD  ++ +ES  S        
Sbjct: 7   SLSTNLTVSTNITATSAPTTLHKHRLHNSTLKSLSKSGKLDEALRLIESWPSKSPATAPD 66

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPT-------NLLRKNKGISSKLLRLYATFGLID 143
            E  A  L +C   KA+EHG +L+  +         NLL  N  +  KL+ L++  G +D
Sbjct: 67  VEACALFLHSCISRKALEHGQRLYLQLLLYRDRCNHNLL-NNPTLKGKLITLFSVCGRVD 125

Query: 144 EAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           EA +VF+            W ++  GY+  G  ++A+ LY++M  +  +   F F   LK
Sbjct: 126 EARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALK 185

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC+ LG +R G  VH   ++     D  V NAL+ +Y++ G   +A  +FD + +++L+S
Sbjct: 186 ACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVS 245

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NS++ G +    + EA + FR M   G     V +++IL   A  + L  G ++H  ++
Sbjct: 246 WNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIV 305

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALI 376
           +   + D  + NSL+ +Y+K G +D    +F+ M  KD+ SWN++I  ++   +  EA+ 
Sbjct: 306 KSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAME 365

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M   G  PD +TF++LLS C+H G    G RLF +M   +GISP VEHYAC+V++ 
Sbjct: 366 SFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVL 425

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG I EA   IV+ M F+ +  +WG+LL +C LHGNV + E  A++LFELEP+N  N+
Sbjct: 426 GRAGRIKEALE-IVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNY 484

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  IY NAG  + V+ V   +  RG+
Sbjct: 485 VMLSNIYANAGMWESVKVVREFMEKRGM 512


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 256/460 (55%), Gaps = 17/460 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
            AL+ ++Q ++SS   G+     T +S+L+ C    A   G ++H  +       +  I+
Sbjct: 286 HALELLLQ-MKSS---GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIA 341

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
             L+ +YA  GL+D+A +VFD +  R      WN+LISG +   ++ +A++L+ +M +EG
Sbjct: 342 FGLVDMYAKHGLLDDAKKVFDWIPQRDLVL--WNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
            + ++ T   VLK+ A L  I    +VH  A + GF  D  V+N L+D Y KC  +  A 
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            VF++ G+ D+I++ SM+T         +A  +F  M+  G DPDP  +SS+L   A+ S
Sbjct: 460 RVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLS 519

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII- 365
               G QVH  +++R    D+   N+L+  Y+K G ++ A   F  +P+K VVSW+++I 
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIG 579

Query: 366 ----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
               H H K   AL  F +M  + + P+H+T  S+L AC H G V   +R F+ M E +G
Sbjct: 580 GLAQHGHGK--RALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I    EHYACM++L GRAG +D+A  + V  M F+ +  VWGALL A  +H +  +G  A
Sbjct: 638 IERTEEHYACMIDLLGRAGKLDDAMEL-VNSMPFQTNAAVWGALLAASRVHRDPELGRLA 696

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           A+KLF LEP+      LL   Y +AG  DDV +V +++ D
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKD 736



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 181/343 (52%), Gaps = 8/343 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G +LH L     L  +  +++ L+ +Y  FG +DEA  VFD+          WN L+S Y
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERN-TVSWNGLMSAY 177

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            +      A+ ++ +M   GV+P++F F  V+ AC G   +  G KVH   +R G+  D 
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F  NALVDMY+K GDI  A  VF ++   D++S+N+ ++G + HG    A ++   M  +
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G  P+   +SSIL   A +    +G Q+HG++++   + D  IA  L+ +Y+K G LD A
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDA 357

Query: 347 CWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +FD +PQ+D+V WN++I   +H   H EAL  F +M ++G   +  T  ++L + A L
Sbjct: 358 KKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASL 417

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            ++    R    + EK G          +++ Y +   ++ AY
Sbjct: 418 EAIS-DTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 192/390 (49%), Gaps = 27/390 (6%)

Query: 92  ETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           ET   LL      +++  G  +H  L+ + L    +   + LL  Y+   L   A +VFD
Sbjct: 5   ETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFAVFR---NHLLSFYSKCRLPGSARRVFD 61

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           ++ +    +  W+SL++ Y+      DA+  +  M    V  ++F  P VLK     G  
Sbjct: 62  EIPDPCHVS--WSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF- 118

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTG 269
             G ++H  A+  G G D FV NALV MY   G + +AR VFD  G  ++ +S+N +++ 
Sbjct: 119 --GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           Y+ +     A  +F  M+  G  P+    S ++     +  L  G +VH  V+R G + D
Sbjct: 177 YVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKD 236

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           +  AN+L+ +YSK G +  A  +F  +P+ DVVSWN+ I     H  D  AL    QM+ 
Sbjct: 237 VFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G++P+  T  S+L ACA  G+  +G ++   MV+    S     +  +V++Y + GL+D
Sbjct: 297 SGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLD 355

Query: 444 EAYSMIVEKMEFEASP----VVWGALLYAC 469
           +A      K  F+  P    V+W AL+  C
Sbjct: 356 DA------KKVFDWIPQRDLVLWNALISGC 379



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 7/265 (2%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +  H+ A     G      N L+  Y+KC     AR VFD I +   +S++S++T Y ++
Sbjct: 22  QGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
            +  +A   FR M       +   +  +L  A     G Q+H   +  G+  D+ +AN+L
Sbjct: 82  AMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANAL 141

Query: 334 IVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD 389
           + +Y   G +D+A  +FD    +++ VSWN ++ A+ K+     A+  F +M   GV P+
Sbjct: 142 VAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPN 201

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
              F  +++AC     ++ G ++ + MV + G    V     +V++Y + G I  A +++
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRKVHA-MVIRTGYDKDVFTANALVDMYSKLGDIRMA-AVV 259

Query: 450 VEKMEFEASPVVWGALLYACYLHGN 474
             K+  E   V W A +  C LHG+
Sbjct: 260 FGKVP-ETDVVSWNAFISGCVLHGH 283


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 256/476 (53%), Gaps = 48/476 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F S L  C  L  +  G ++H L+  +    +  + S L+ +Y+  G +  A +VF  M
Sbjct: 149 SFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WNSLI+ Y + G   +A+ ++ +M + G+EPD+ T   V+ ACA L  ++ 
Sbjct: 209 IERNLVT--WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKE 266

Query: 213 GEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIG--------------- 256
           G ++H   V+     D  VL NALVDMYAKC  + +AR VFDR+                
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYA 326

Query: 257 ----------------NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
                            ++++S+N+++ GY  +G   EA  +FR +      P      +
Sbjct: 327 RAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGN 386

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEW------DLCIANSLIVVYSKDGKLDQACWLFD 351
           +L   AN + L +G Q H  VL++G E+      D+ + NSLI +Y K G ++    +F+
Sbjct: 387 LLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFE 446

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M ++D VSWN+II  ++++    EAL  F +M   G  PDH+T + +L AC+H G V+ 
Sbjct: 447 KMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEE 506

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G   F  M E++G+ P  +HY CMV+L GRAG ++EA ++I E M      VVWG+LL A
Sbjct: 507 GRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLI-EAMPVNPDAVVWGSLLAA 564

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C +HGN+ MG+ AA+KL E++P N   + LL  +Y   GR  DV RV +++  +G+
Sbjct: 565 CKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGV 620



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 226/449 (50%), Gaps = 74/449 (16%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            +  FA LL++C + ++      +H  I          I ++L+ +Y     +D+A ++F
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 150 DQMSNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIA 180
           D+M  R  F +                              WNS++SG+A+   +E+++ 
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
            + +M  E    ++++F   L ACAGL  + +G +VH    +  +  D ++ +AL+DMY+
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG +  A  VF  +  ++L+++NS++T Y  +G   EA ++F  M+ +G +PD V ++S
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLAS 253

Query: 301 IL-ANASL--LRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-- 354
           ++ A ASL  L+ G Q+H  V++      DL + N+L+ +Y+K  K+++A  +FD M   
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313

Query: 355 -----------------------------QKDVVSWNSIIHAHSK---DHEALIYFEQME 382
                                        Q++VVSWN++I  +++   + EAL  F  ++
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-----KYGISPRVEHYACMVNLYG 437
           R+ + P H TF +LLSACA+L  + +G +  + +++     + G    +     ++++Y 
Sbjct: 374 RESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYM 433

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           + G I++  S + EKM+ E   V W A++
Sbjct: 434 KCGSIEDG-SRVFEKMK-ERDCVSWNAII 460



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 37/291 (12%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+   F ++L +C      R    VH   +   F  + F+ N L+D+Y KC  +  AR +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 252 FDRIGNK-------------------------------DLISYNSMLTGYIHHGLLVEAF 280
           FDR+  +                               D  S+NSM++G+  H    E+ 
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 281 DIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           + F  M    F  +  +  S L A A L  L +G QVH  V +     D+ + ++LI +Y
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
           SK G +  A  +F  M ++++V+WNS+I  + ++    EAL  F +M   G+ PD +T  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           S++SACA L ++K G ++ + +V+       +     +V++Y +   ++EA
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 44/194 (22%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA------ 367
           VH  +L      ++ I N LI VY K   LD A  LFD MPQ++  +WNS+I        
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 368 ----------------------------HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
                                       H +  E+L YF +M R+  L +  +F S LSA
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFE 456
           CA L  + +G ++ + +V K   S  V   + ++++Y + G +   +E +S ++E+    
Sbjct: 157 CAGLMDLNMGTQVHA-LVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER---- 211

Query: 457 ASPVVWGALLYACY 470
            + V W +L+  CY
Sbjct: 212 -NLVTWNSLI-TCY 223


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 248/455 (54%), Gaps = 10/455 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I  +    Q G+T  + T  S+L T  Q  A+  G  +H     N    N  + + LL +
Sbjct: 195 IHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDM 254

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQ 194
           YA   L+  A ++F+ ++ +      W+++I GY       DA+ALY  M    G+ P  
Sbjct: 255 YAKCHLLFYARKIFNTVNKKNDVC--WSAMIGGYVLHDSISDALALYDDMLCIYGLNPTP 312

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   +L+ACA L  ++ G+K+H   ++ G   D  V N+L+ MYAKCG +  A    D 
Sbjct: 313 ATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDE 372

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP---DPVAISSILANASLLRIG 311
           +  KD +SY+++++G + +G   +A  IFR M  +G  P     +A+    ++ + L+ G
Sbjct: 373 MIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG 432

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H 368
              HG+ + RG   D  I N++I +YSK GK+  +  +FD M  +D++SWN++I     H
Sbjct: 433 TCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIH 492

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               EAL  F++++  G+ PD +T +++LSAC+H G V  G+  FS M + + I PR+ H
Sbjct: 493 GLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAH 552

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y CMV+L  RAG +DEAY+ I ++M F  +  +WGALL AC  H N+ MGE  ++K+  L
Sbjct: 553 YICMVDLLARAGNLDEAYTFI-QRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLL 611

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            P+   NF L+  IY + GR DD   +  +    G
Sbjct: 612 GPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHG 646



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/530 (26%), Positives = 253/530 (47%), Gaps = 52/530 (9%)

Query: 37  QISRNRIT----TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTE 92
            ISRN I      F   PK  P+ +L N               I      +Q G+T    
Sbjct: 51  HISRNEIQLARHVFDQIPK--PSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNF 108

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  LL+ C  L+A++ G  +H       L  +  +S+ LL +YA  G + +A  +F+ +
Sbjct: 109 TFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI 168

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S++      WN++I+ ++    +   I    QM++ GV P+  T   +L        +  
Sbjct: 169 SHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQ 228

Query: 213 GEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           G+ +H   +R  F FD  VL  AL+DMYAKC  +  AR +F+ +  K+ + +++M+ GY+
Sbjct: 229 GKAIHAYYIR-NFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYV 287

Query: 272 HHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
            H  + +A  ++  M+ + G +P P  ++++L   A  + L+ G ++H  +++ G++ D 
Sbjct: 288 LHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDT 347

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            + NSLI +Y+K G +D A    D M  KD VS+++II    ++    +AL+ F QM+  
Sbjct: 348 TVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSS 407

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVG---------------ERLFSVMVEKYG-------- 421
           G+ P   T ++LL AC+HL +++ G                 + + +++ Y         
Sbjct: 408 GIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITIS 467

Query: 422 --ISPRVEH-----YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLH 472
             I  R+++     +  M+  YG  GL  EA S+  E       P  V   A+L AC   
Sbjct: 468 REIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHS 527

Query: 473 GNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
           G V  G+   ++  + F ++P   H +  ++ +   AG LD+    ++RM
Sbjct: 528 GLVTEGKYWFSSMSQNFNIKPRMAH-YICMVDLLARAGNLDEAYTFIQRM 576



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 183/354 (51%), Gaps = 14/354 (3%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           +++L R + +   I  A  VFDQ+   +     WN +I  YA  G ++ +I LY  M + 
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVL--WNMMIRTYAWSGPFQQSIYLYLHMLQL 101

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV P  FTFP +LKAC+ L  +++G  +H  A   G   D +V  AL+ MYAKCG + +A
Sbjct: 102 GVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQA 161

Query: 249 RTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
           +T+F+ I   ++D++++N+M+  +  H L  +       M   G  P+   + SIL    
Sbjct: 162 QTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIG 221

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            A+ L  G  +H + +R     ++ +  +L+ +Y+K   L  A  +F+ + +K+ V W++
Sbjct: 222 QANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSA 281

Query: 364 IIHA---HSKDHEAL-IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +I     H    +AL +Y + +   G+ P   T  ++L ACA L  +K G++L   M+ K
Sbjct: 282 MIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMI-K 340

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            G+         ++++Y + G++D A   + E +  +   V + A++  C  +G
Sbjct: 341 SGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT--VSYSAIISGCVQNG 392


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 231/389 (59%), Gaps = 9/389 (2%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +  A  +FD++S  +     WN+L+SGY +  +++D I L+ +M+ + V+PD+ T   +L
Sbjct: 90  VHSARAMFDKISRPSVTT--WNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVIL 147

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            +C+ LG++  G +VH  +VRF    D FV + LVDMY+KCG I  AR++F+++  +D++
Sbjct: 148 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV 207

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
            +NS+++G   H L  EAFD F+ M  NG  P   + +S++ + S L     G Q+H  V
Sbjct: 208 CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQV 267

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
           ++ G + ++ + ++LI +Y+K G +D A   FD M  K++V+WN +IH ++++    +A+
Sbjct: 268 MKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAV 327

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE M      PD +TF+++L+ C+H G V      F+ M   YGI P  EHY C+++ 
Sbjct: 328 ELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDA 387

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG   E  ++I  KM  +  P++W  LL AC +H N  +G+ AA+ LF ++P N   
Sbjct: 388 LGRAGRFVEVEALI-HKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSP 446

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + LL  IY + GR  D   V  ++ +RG+
Sbjct: 447 YVLLSNIYASLGRHGDASAVRALMSNRGV 475



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 186/369 (50%), Gaps = 50/369 (13%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           ++ + + L+ +Y     +DEA +VF+ + + T  +  WN LI+G+ + G    A+ +   
Sbjct: 7   DQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVS--WNILITGFGQEGSCAKAVEVLSL 64

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+E G EP++ T+  +L +C                                    K  D
Sbjct: 65  MQEAGFEPNEVTYSNLLASC-----------------------------------IKARD 89

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  AR +FD+I    + ++N++L+GY       +  ++FR M      PD   ++ IL++
Sbjct: 90  VHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSS 149

Query: 305 AS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            S   +L  G QVH   +R  +  D+ +A+ L+ +YSK G++  A  +F+ M ++DVV W
Sbjct: 150 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCW 209

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           NSII     HS + EA  +F+QM  +G++P   ++ S++++C+ L S+  G ++ +  V 
Sbjct: 210 NSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHA-QVM 268

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           K G    V   + ++++Y + G +D+A  +  + M  + + V W  +++    +G   +G
Sbjct: 269 KDGYDQNVYVGSALIDMYAKCGNMDDA-RLFFDTMMMK-NIVAWNEMIHGYAQNG---LG 323

Query: 479 ETAAQKLFE 487
           + A + LFE
Sbjct: 324 DKAVE-LFE 331



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 38/254 (14%)

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           R GFG D  V N+L+DMY KC ++ +A  VF+ + +  ++S+N ++TG+   G   +A +
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 282 IFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           +   M   GF+P+ V  S++LA+                       CI         K  
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLAS-----------------------CI---------KAR 88

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLS 398
            +  A  +FD + +  V +WN+++  + ++    + +  F +M+   V PD  T   +LS
Sbjct: 89  DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 148

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           +C+ LG +  G ++ S  V ++ +   +   + +V++Y + G I  A S I  KM  E  
Sbjct: 149 SCSKLGILDFGRQVHSASV-RFLLHNDMFVASGLVDMYSKCGQIGIARS-IFNKMT-ERD 205

Query: 459 PVVWGALLYACYLH 472
            V W +++    +H
Sbjct: 206 VVCWNSIISGLTIH 219



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 20/256 (7%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NGI     ++AS++ +C +L ++ HG ++H  +  +   +N  + S L+ +YA  G +D
Sbjct: 234 ENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMD 293

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   FD M  +   A  WN +I GYA+ G  + A+ L+  M     +PD  TF  VL  
Sbjct: 294 DARLFFDTMMMKNIVA--WNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTG 351

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           C+  GL+        +++   +G          L+D   + G  V+   +  ++  K D 
Sbjct: 352 CSHSGLVDKA-MAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDP 410

Query: 261 ISYNSMLTG-YIHHGLLV---EAFDIFRGMILNGFDPDP-VAISSILA------NASLLR 309
           I +  +L    +HH   +    A  +FR   ++  +P P V +S+I A      +AS +R
Sbjct: 411 IIWEVLLAACVVHHNAELGKCAAEHLFR---IDPKNPSPYVLLSNIYASLGRHGDASAVR 467

Query: 310 IGAQVHGWVLRRGVEW 325
                 G V  RG  W
Sbjct: 468 ALMSNRGVVKGRGYSW 483


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 245/444 (55%), Gaps = 9/444 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+     T +S L+ C  +   E G +LH  +    +  +  +   L+ +Y+    +D
Sbjct: 205 KSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMD 264

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF  M  R   A  WN++ISG+++  E E+A +L+  M  EG+  +Q T   VLK+
Sbjct: 265 DARLVFKLMPERDMIA--WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS 322

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A L    +  ++H  +++ GF FD +V+N+L+D Y KCG +  A  VF+     DL+ +
Sbjct: 323 IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
            S++T Y   G   EA  ++  M   G  PD    SS+L   A+ S    G QVH  +L+
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G   D+   NSL+ +Y+K G ++ A   F  +P + +VSW+++I     H    EAL  
Sbjct: 443 FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQL 502

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+QM + GV P+H+T VS+L AC H G V   +  F+ M   +GI P  EHYACM++L G
Sbjct: 503 FKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLG 562

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG ++ A  + V KM F+A+ +VWGALL A  +H N+ +GE AA+ L  LEP+      
Sbjct: 563 RAGKLEAAMEL-VNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHV 621

Query: 498 LLIKIYGNAGRLDDVERVERMLVD 521
           LL  IY + G  D V RV R++ D
Sbjct: 622 LLANIYASVGMWDKVARVRRLMKD 645



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 199/382 (52%), Gaps = 15/382 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI      F S+L+ C   K +  G ++H ++       ++ +++ L+ LYA  G   +A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD + +R+  +  WN+L S Y     + +A++L+  M   G+ P++F+   ++  C 
Sbjct: 65  RSLFDAIPDRSVVS--WNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL     G K+H   ++ G+  D F  NALVDMYAK G +  A +VFD I   D++S+N+
Sbjct: 123 GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNA 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ G + H     A ++ R M  +G  P+   +SS L   A  +L  +G Q+H  +++  
Sbjct: 183 IIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMD 242

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFE 379
           +  D  +   LI +YSK   +D A  +F  MP++D+++WN++I  HS+   D EA   F 
Sbjct: 243 MGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFP 302

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M  +G+  +  T  ++L + A L +  +  ++ ++ + K G          +++ YG+ 
Sbjct: 303 LMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL-KSGFEFDNYVVNSLIDTYGKC 361

Query: 440 GLIDEAYSMIVEKMEFEASPVV 461
           G +++A  +      FE SP+V
Sbjct: 362 GHVEDATRV------FEESPIV 377


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 255/444 (57%), Gaps = 11/444 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           V + T +SLL  C  + + + G  +H  +    ++ N  I S LL +Y   G  ++A  V
Sbjct: 343 VDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSV 402

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F  M  R   A  W S+I+G+ +   ++DA+ L+  ME+EGV+ D      V+ A  GL 
Sbjct: 403 FYTMKERDVVA--WGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLE 460

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            + +G  +H  A++ G   D FV  +LVDMY+K G    A  VF  + NK+L+++NSM++
Sbjct: 461 NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMIS 520

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVE 324
            Y  +GL   + ++   ++ +GF  D V+I+++L      A+LL+ G  +H + +R  + 
Sbjct: 521 CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLK-GKTLHAYQIRLQIP 579

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQM 381
            DL + N+LI +Y K G L  A  +F++MP++++V+WNS+I    +H    EA+  F++M
Sbjct: 580 SDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEM 639

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
           +R    PD +TF++L+++C+H G V+ G  LF +M  +YG+ PR+EHYA +V+L GRAG 
Sbjct: 640 KRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGR 699

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
           +D+AYS I   M  +A   VW  LL+AC  H N+ +GE  A  L ++EP    N+  L+ 
Sbjct: 700 LDDAYSFI-RGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLN 758

Query: 502 IYGNAGRLDDVERVERMLVDRGLE 525
           +YG     D    +   +  RGL+
Sbjct: 759 LYGEVEMWDRAANLRASMKGRGLK 782



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 192/371 (51%), Gaps = 19/371 (5%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H  I  N+   +  + + L+ +Y++     EA  +F ++ NR+     WN +I G+
Sbjct: 161 GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIV-AWNVMIGGF 219

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            E G +E ++ LY   + E  +    +F     AC+   ++  G +VH D ++  F  D 
Sbjct: 220 VENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP 279

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           +V  +L+ MYAK G +  A+ VFD++ +K++   N+M++ +I +G   +A  ++  M   
Sbjct: 280 YVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAG 339

Query: 290 GFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
               D   ISS+L+  S++     G  VH  V++R ++ ++ I ++L+ +Y K G  + A
Sbjct: 340 ETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDA 399

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  M ++DVV+W S+I    ++    +AL  F  ME++GV  D     S++SA   L
Sbjct: 400 DSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGL 459

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---- 459
            +V++G  +    +++ G+   V     +V++Y + G  + A      +M F + P    
Sbjct: 460 ENVELGHLIHGFAIKR-GLESDVFVACSLVDMYSKFGFAESA------EMVFSSMPNKNL 512

Query: 460 VVWGALLYACY 470
           V W +++ +CY
Sbjct: 513 VAWNSMI-SCY 522



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 196/395 (49%), Gaps = 36/395 (9%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            + +T    TF SLL+TC  L  + HG  +H  I T  L+ +  I++ L+ +Y   GL+ 
Sbjct: 48  HSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLG 107

Query: 144 EAHQVFDQMSNRTAFA---FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            A QVFD+MS     A     WN +I GY + G +E+ +A + +M+E             
Sbjct: 108 SALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE------------- 154

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-D 259
                 L     G ++H   +R  F  D ++  AL+ MY+ C   ++A ++F ++ N+ +
Sbjct: 155 ------LSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSN 208

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS-----SILANASLLRIGAQV 314
           ++++N M+ G++ +G+  ++ +++   +    +   V+ S     +  ++  +L  G QV
Sbjct: 209 IVAWNVMIGGFVENGMWEKSLELYS--LAKNENCKLVSASFTGAFTACSHGEVLDFGRQV 266

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           H  V++   + D  +  SL+ +Y+K G ++ A  +FD +  K+V   N++I A   + + 
Sbjct: 267 HCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRA 326

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
           ++AL  + +M+      D  T  SLLS C+ +GS   G R     V K  +   V   + 
Sbjct: 327 YDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG-RTVHAEVIKRSMQSNVAIQSA 385

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           ++ +Y + G  ++A S+     E +   V WG+++
Sbjct: 386 LLTMYYKCGSTEDADSVFYTMKERDV--VAWGSMI 418



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 135/294 (45%), Gaps = 30/294 (10%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           NS I    + G+Y  A+ L+ +     +   +FTFP +LK CA L  +  G  +H   V 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-----DLISYNSMLTGYIHHGLLV 277
            G   D ++  +L++MY KCG +  A  VFD++        D+  +N ++ GY  +G   
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           E    F  M                   S    G Q+HG+++R   E D  +  +LI +Y
Sbjct: 144 EGLAQFCRM----------------QELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 187

Query: 338 SKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
           S   +  +A  LF  +  + ++V+WN +I    ++    ++L  +   + +       +F
Sbjct: 188 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 247

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC--MVNLYGRAGLIDEA 445
               +AC+H   +  G ++   +++   ++ + + Y C  ++ +Y ++G +++A
Sbjct: 248 TGAFTACSHGEVLDFGRQVHCDVIK---MNFQDDPYVCTSLLTMYAKSGSVEDA 298


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 254/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T++S+L  C +L  +  G +LH  +    L  +  +   L+ +YA     G +D++ +VF
Sbjct: 233 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 292

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           +QM      +  W ++I+ Y + GE + +AI L+ +M    + P+ F+F  VLKAC  L 
Sbjct: 293 EQMPEHNVMS--WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 350

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               GE+V+  AV+ G      V N+L+ MYA+ G +  AR  FD +  K+L+SYN+++ 
Sbjct: 351 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 410

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEW 325
           GY  +    EAF +F  +   G        +S+L+ A+    +  G Q+HG +L+ G + 
Sbjct: 411 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 470

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           + CI N+LI +YS+ G ++ A  +F+ M  ++V+SW S+I   +K      AL  F +M 
Sbjct: 471 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 530

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G  P+ +T+V++LSAC+H+G +  G++ F+ M +++GI PR+EHYACMV+L GR+GL+
Sbjct: 531 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 590

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I   M   A  +VW  LL AC +HGN  +G  AA+ + E EPD+   + LL  +
Sbjct: 591 VEAMEFI-NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 649

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           + +AG+  DV ++ + + +R L
Sbjct: 650 HASAGQWKDVVKIRKSMKERNL 671



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 211/392 (53%), Gaps = 17/392 (4%)

Query: 94  FASLLETCYQLKAVEHG-IKLHRLIPTNLLRKNKGISSKLLRLYAT-FGLIDEAHQVFDQ 151
           FA+++  C        G I    ++ T  L  +  +  +L+ ++    G +  A++VFD+
Sbjct: 131 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 190

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M  R      W  +I+ +A+LG   DAI L+  ME  G  PD+FT+  VL AC  LGL+ 
Sbjct: 191 MPERNLVT--WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA 248

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGNKDLISYNSMLT 268
           +G+++H   +R G   D  V  +LVDMYAKC   G +  +R VF+++   +++S+ +++T
Sbjct: 249 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 308

Query: 269 GYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
            Y+  G    EA ++F  MI     P+  + SS+L    N S    G QV+ + ++ G+ 
Sbjct: 309 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 368

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
              C+ NSLI +Y++ G+++ A   FD + +K++VS+N+I+  ++K+    EA + F ++
Sbjct: 369 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 428

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+     TF SLLS  A +G++  GE++   ++ K G          ++++Y R G 
Sbjct: 429 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL-KGGYKSNQCICNALISMYSRCGN 487

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           I+ A+ +  E ME + + + W +++     HG
Sbjct: 488 IEAAFQVFNE-ME-DRNVISWTSMITGFAKHG 517



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 212/386 (54%), Gaps = 17/386 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T++ LL++C + +  + G  +HR +  + L  +  + + L+ LY+  G  + A  +F+ M
Sbjct: 28  TYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGM 87

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N+      W++++S +A       AI  +  M E G  P+++ F  V++AC+      V
Sbjct: 88  GNKRDLV-SWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV 146

Query: 213 GEKVHLDAVRFGF-GFDGFVLNALVDMYAK-CGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           GE ++   V+ G+   D  V   L+DM+ K  GD+  A  VFD++  ++L+++  M+T +
Sbjct: 147 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 206

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDL 327
              G   +A D+F  M L+G+ PD    SS+L+  +   LL +G Q+H  V+R G+  D+
Sbjct: 207 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 266

Query: 328 CIANSLIVVYSK---DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQ 380
           C+  SL+ +Y+K   DG +D +  +F+ MP+ +V+SW +II A+ +    D EA+  F +
Sbjct: 267 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 326

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M    + P+H +F S+L AC +L     GE+++S  V K GI+        ++++Y R+G
Sbjct: 327 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV-KLGIASVNCVGNSLISMYARSG 385

Query: 441 LIDE---AYSMIVEKMEFEASPVVWG 463
            +++   A+ ++ EK     + +V G
Sbjct: 386 RMEDARKAFDILFEKNLVSYNAIVDG 411



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 25/353 (7%)

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           ++G    A +    M ++   PD  T+  +LK+C      ++G+ VH   ++ G   D  
Sbjct: 3   DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 62

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           VLN L+ +Y+KCGD   AR +F+ +GNK DL+S+++M++ + ++ +  +A   F  M+  
Sbjct: 63  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSK-DGKLD 344
           GF P+    ++++   +NA+   +G  ++G+V++ G +E D+C+   LI ++ K  G L 
Sbjct: 123 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 182

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +FD MP++++V+W  +I   ++     +A+  F  ME  G +PD  T+ S+LSAC 
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 242

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA---GLIDEAYSMIVEKMEFEAS 458
            LG + +G++L S ++ + G++  V     +V++Y +    G +D++   + E+M  E +
Sbjct: 243 ELGLLALGKQLHSRVI-RLGLALDVCVGCSLVDMYAKCAADGSVDDSRK-VFEQMP-EHN 299

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNFELLIKIYGN 505
            + W A++ A Y+    C  E  A +LF       + P N  +F  ++K  GN
Sbjct: 300 VMSWTAIITA-YVQSGECDKE--AIELFCKMISGHIRP-NHFSFSSVLKACGN 348



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI +   TFASLL     + A+  G ++H  +     + N+ I + L+ +Y+  G I+ 
Sbjct: 431 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 490

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A QVF++M +R   +  W S+I+G+A+ G    A+ ++ +M E G +P++ T+  VL AC
Sbjct: 491 AFQVFNEMEDRNVIS--WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 548

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFV-----LNALVDMYAKCGDIVKA 248
           + +G+I  G+K H +++   +   G V        +VD+  + G +V+A
Sbjct: 549 SHVGMISEGQK-HFNSM---YKEHGIVPRMEHYACMVDLLGRSGLLVEA 593


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 254/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T++S+L  C +L  +  G +LH  +    L  +  +   L+ +YA     G +D++ +VF
Sbjct: 251 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 310

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           +QM      +  W ++I+ Y + GE + +AI L+ +M    + P+ F+F  VLKAC  L 
Sbjct: 311 EQMPEHNVMS--WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 368

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               GE+V+  AV+ G      V N+L+ MYA+ G +  AR  FD +  K+L+SYN+++ 
Sbjct: 369 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 428

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEW 325
           GY  +    EAF +F  +   G        +S+L+ A+    +  G Q+HG +L+ G + 
Sbjct: 429 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 488

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           + CI N+LI +YS+ G ++ A  +F+ M  ++V+SW S+I   +K      AL  F +M 
Sbjct: 489 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 548

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G  P+ +T+V++LSAC+H+G +  G++ F+ M +++GI PR+EHYACMV+L GR+GL+
Sbjct: 549 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 608

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I   M   A  +VW  LL AC +HGN  +G  AA+ + E EPD+   + LL  +
Sbjct: 609 VEAMEFI-NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 667

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           + +AG+  DV ++ + + +R L
Sbjct: 668 HASAGQWKDVVKIRKSMKERNL 689



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 211/392 (53%), Gaps = 17/392 (4%)

Query: 94  FASLLETCYQLKAVEHG-IKLHRLIPTNLLRKNKGISSKLLRLYAT-FGLIDEAHQVFDQ 151
           FA+++  C        G I    ++ T  L  +  +  +L+ ++    G +  A++VFD+
Sbjct: 149 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 208

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M  R      W  +I+ +A+LG   DAI L+  ME  G  PD+FT+  VL AC  LGL+ 
Sbjct: 209 MPERNLVT--WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA 266

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGNKDLISYNSMLT 268
           +G+++H   +R G   D  V  +LVDMYAKC   G +  +R VF+++   +++S+ +++T
Sbjct: 267 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 326

Query: 269 GYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
            Y+  G    EA ++F  MI     P+  + SS+L    N S    G QV+ + ++ G+ 
Sbjct: 327 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 386

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
              C+ NSLI +Y++ G+++ A   FD + +K++VS+N+I+  ++K+    EA + F ++
Sbjct: 387 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 446

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+     TF SLLS  A +G++  GE++   ++ K G          ++++Y R G 
Sbjct: 447 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL-KGGYKSNQCICNALISMYSRCGN 505

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           I+ A+ +  E ME + + + W +++     HG
Sbjct: 506 IEAAFQVFNE-ME-DRNVISWTSMITGFAKHG 535



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 212/386 (54%), Gaps = 17/386 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T++ LL++C + +  + G  +HR +  + L  +  + + L+ LY+  G  + A  +F+ M
Sbjct: 46  TYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGM 105

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N+      W++++S +A       AI  +  M E G  P+++ F  V++AC+      V
Sbjct: 106 GNKRDLV-SWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV 164

Query: 213 GEKVHLDAVRFGF-GFDGFVLNALVDMYAK-CGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           GE ++   V+ G+   D  V   L+DM+ K  GD+  A  VFD++  ++L+++  M+T +
Sbjct: 165 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 224

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDL 327
              G   +A D+F  M L+G+ PD    SS+L+  +   LL +G Q+H  V+R G+  D+
Sbjct: 225 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 284

Query: 328 CIANSLIVVYSK---DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQ 380
           C+  SL+ +Y+K   DG +D +  +F+ MP+ +V+SW +II A+ +    D EA+  F +
Sbjct: 285 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 344

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M    + P+H +F S+L AC +L     GE+++S  V K GI+        ++++Y R+G
Sbjct: 345 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV-KLGIASVNCVGNSLISMYARSG 403

Query: 441 LIDE---AYSMIVEKMEFEASPVVWG 463
            +++   A+ ++ EK     + +V G
Sbjct: 404 RMEDARKAFDILFEKNLVSYNAIVDG 429



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 25/353 (7%)

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           ++G    A +    M ++   PD  T+  +LK+C      ++G+ VH   ++ G   D  
Sbjct: 21  DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 80

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           VLN L+ +Y+KCGD   AR +F+ +GNK DL+S+++M++ + ++ +  +A   F  M+  
Sbjct: 81  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 140

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSK-DGKLD 344
           GF P+    ++++   +NA+   +G  ++G+V++ G +E D+C+   LI ++ K  G L 
Sbjct: 141 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 200

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +FD MP++++V+W  +I   ++     +A+  F  ME  G +PD  T+ S+LSAC 
Sbjct: 201 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 260

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA---GLIDEAYSMIVEKMEFEAS 458
            LG + +G++L S ++ + G++  V     +V++Y +    G +D++   + E+M  E +
Sbjct: 261 ELGLLALGKQLHSRVI-RLGLALDVCVGCSLVDMYAKCAADGSVDDSRK-VFEQMP-EHN 317

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNFELLIKIYGN 505
            + W A++ A Y+    C  E  A +LF       + P N  +F  ++K  GN
Sbjct: 318 VMSWTAIITA-YVQSGECDKE--AIELFCKMISGHIRP-NHFSFSSVLKACGN 366



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI +   TFASLL     + A+  G ++H  +     + N+ I + L+ +Y+  G I+ 
Sbjct: 449 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 508

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A QVF++M +R   +  W S+I+G+A+ G    A+ ++ +M E G +P++ T+  VL AC
Sbjct: 509 AFQVFNEMEDRNVIS--WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 566

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFV-----LNALVDMYAKCGDIVKA 248
           + +G+I  G+K H +++   +   G V        +VD+  + G +V+A
Sbjct: 567 SHVGMISEGQK-HFNSM---YKEHGIVPRMEHYACMVDLLGRSGLLVEA 611


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 231/389 (59%), Gaps = 9/389 (2%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +  A  +FD++S  +     WN+L+SGY +  +++D I L+ +M+ + V+PD+ T   +L
Sbjct: 74  VHSARAMFDKISRPSVTT--WNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVIL 131

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            +C+ LG++  G +VH  +VRF    D FV + LVDMY+KCG I  AR++F+++  +D++
Sbjct: 132 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV 191

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
            +NS+++G   H L  EAFD F+ M  NG  P   + +S++ + S L     G Q+H  V
Sbjct: 192 CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQV 251

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
           ++ G + ++ + ++LI +Y+K G +D A   FD M  K++V+WN +IH ++++    +A+
Sbjct: 252 MKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAV 311

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE M      PD +TF+++L+ C+H G V      F+ M   YGI P  EHY C+++ 
Sbjct: 312 ELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDA 371

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG   E  ++I  KM  +  P++W  LL AC +H N  +G+ AA+ LF ++P N   
Sbjct: 372 LGRAGRFVEVEALI-HKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSP 430

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + LL  IY + GR  D   V  ++ +RG+
Sbjct: 431 YVLLSNIYASLGRHGDASAVRALMSNRGV 459



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 180/359 (50%), Gaps = 50/359 (13%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y     +DEA +VF+ + + T  +  WN LI+G+ + G    A+ +   M+E G EP++
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVS--WNILITGFGQEGSCAKAVEVLSLMQEAGFEPNE 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T+  +L +C                                    K  D+  AR +FD+
Sbjct: 59  VTYSNLLASCI-----------------------------------KARDVHSARAMFDK 83

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIG 311
           I    + ++N++L+GY       +  ++FR M      PD   ++ IL++ S   +L  G
Sbjct: 84  ISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFG 143

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H 368
            QVH   +R  +  D+ +A+ L+ +YSK G++  A  +F+ M ++DVV WNSII     H
Sbjct: 144 RQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIH 203

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
           S + EA  +F+QM  +G++P   ++ S++++C+ L S+  G ++ +  V K G    V  
Sbjct: 204 SLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHA-QVMKDGYDQNVYV 262

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
            + ++++Y + G +D+A  +  + M  + + V W  +++    +G   +G+ A + LFE
Sbjct: 263 GSALIDMYAKCGNMDDA-RLFFDTMMMK-NIVAWNEMIHGYAQNG---LGDKAVE-LFE 315



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 20/256 (7%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NGI     ++AS++ +C +L ++ HG ++H  +  +   +N  + S L+ +YA  G +D
Sbjct: 218 ENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMD 277

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   FD M  +   A  WN +I GYA+ G  + A+ L+  M     +PD  TF  VL  
Sbjct: 278 DARLFFDTMMMKNIVA--WNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTG 335

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           C+  GL+        +++   +G          L+D   + G  V+   +  ++  K D 
Sbjct: 336 CSHSGLVDKA-MAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDP 394

Query: 261 ISYNSMLTG-YIHHGLLV---EAFDIFRGMILNGFDPDP-VAISSILA------NASLLR 309
           I +  +L    +HH   +    A  +FR   ++  +P P V +S+I A      +AS +R
Sbjct: 395 IIWEVLLAACVVHHNAELGKCAAEHLFR---IDPKNPSPYVLLSNIYASLGRHGDASAVR 451

Query: 310 IGAQVHGWVLRRGVEW 325
                 G V  RG  W
Sbjct: 452 ALMSNRGVVKGRGYSW 467


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 255/447 (57%), Gaps = 8/447 (1%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G    + T  +++ +C +L  +E G ++H  +  +    +  +SS L+ +Y   G ++ 
Sbjct: 201 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 260

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VF+Q+  +   +  WNS+I+GY+  G+ +  I L+ +M+EEG+ P   T   +L AC
Sbjct: 261 AKEVFEQIQRKNVVS--WNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 318

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +    +++G+ +H   +R     D FV ++L+D+Y KCG+I  A  VF  +   +++S+N
Sbjct: 319 SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWN 378

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRR 321
            M++GY+  G  +EA  IF  M   G  PD +  +S+L   S L +   G ++H +++  
Sbjct: 379 VMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 438

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
            +E +  +  +L+ +Y+K G +D+A  +F+ +P++D VSW S+I A   H +  EAL  F
Sbjct: 439 KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLF 498

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M++    PD +TF+++LSAC+H G V  G   F+ M+ +YG  P VEHY+C+++L GR
Sbjct: 499 EKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGR 558

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            G + EAY ++    +      +   L  AC+LH  + +GE   + L E +PD+   + +
Sbjct: 559 VGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYII 618

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +Y +  + D+V +V   + + GL+
Sbjct: 619 LSNMYASVKKWDEVRKVRLKIKELGLK 645



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 240/432 (55%), Gaps = 24/432 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+ C  L  V +G  +H  +  +    +  + S  + +YA   + ++A ++FD+M
Sbjct: 108 TYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++IS Y + G+ E A+ L+ +M+  G +PD  T   V+ +CA L  +  
Sbjct: 168 PERDVAS--WNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLER 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H++ VR GF  DGFV +ALVDMY KCG +  A+ VF++I  K+++S+NSM+ GY  
Sbjct: 226 GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSL 285

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G      ++FR M   G  P    +SSIL   S    L++G  +HG+++R  VE D+ +
Sbjct: 286 KGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFV 345

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV 386
            +SLI +Y K G +  A  +F +MP+ +VVSWN +I  + K     EAL+ F  M + GV
Sbjct: 346 NSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGV 405

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEA 445
            PD +TF S+L AC+ L  ++ G+ + + ++E K  I+  V     ++++Y + G +DEA
Sbjct: 406 KPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEA 463

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELL 499
             +  +  E +   V W +++ A   HG        A KLFE       +PD +  F  +
Sbjct: 464 LHIFNQLPERDF--VSWTSMIAAYGSHGQA----FEALKLFEKMQQSDAKPD-KVTFLAI 516

Query: 500 IKIYGNAGRLDD 511
           +    +AG +D+
Sbjct: 517 LSACSHAGLVDE 528



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 203/368 (55%), Gaps = 17/368 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + T    SLL+TC   K ++ G  +H+ I +  L+ N  +   L+ LY +  L   A  V
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGL 207
           F  + N       WN L++   +   + + + ++ ++     ++PD FT+P VLKAC+GL
Sbjct: 61  FQTIENPLDITL-WNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G +  G+ VH   ++ GF  D  V+++ V MYAKC     A  +FD +  +D+ S+N+++
Sbjct: 120 GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVI 179

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVLRRGVE 324
           + Y   G   +A ++F  M ++GF PD V +++++++ A LL +  G ++H  ++R G  
Sbjct: 180 SCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 239

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS--KDHEALI-YFEQM 381
            D  ++++L+ +Y K G L+ A  +F+ + +K+VVSWNS+I  +S   D ++ I  F +M
Sbjct: 240 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 299

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYG 437
           + +G+ P   T  S+L AC+   ++++G+      +  Y I  RVE      + +++LY 
Sbjct: 300 DEEGIRPTLTTLSSILMACSRSVNLQLGK-----FIHGYIIRNRVEADIFVNSSLIDLYF 354

Query: 438 RAGLIDEA 445
           + G I  A
Sbjct: 355 KCGNIGSA 362


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 255/447 (57%), Gaps = 8/447 (1%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G    + T  +++ +C +L  +E G ++H  +  +    +  +SS L+ +Y   G ++ 
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VF+Q+  +   +  WNS+I+GY+  G+ +  I L+ +M+EEG+ P   T   +L AC
Sbjct: 453 AKEVFEQIQRKNVVS--WNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 510

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +    +++G+ +H   +R     D FV ++L+D+Y KCG+I  A  VF  +   +++S+N
Sbjct: 511 SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWN 570

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRR 321
            M++GY+  G  +EA  IF  M   G  PD +  +S+L   S L +   G ++H +++  
Sbjct: 571 VMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 630

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
            +E +  +  +L+ +Y+K G +D+A  +F+ +P++D VSW S+I A   H +  EAL  F
Sbjct: 631 KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLF 690

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M++    PD +TF+++LSAC+H G V  G   F+ M+ +YG  P VEHY+C+++L GR
Sbjct: 691 EKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGR 750

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            G + EAY ++    +      +   L  AC+LH  + +GE   + L E +PD+   + +
Sbjct: 751 VGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYII 810

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +Y +  + D+V +V   + + GL+
Sbjct: 811 LSNMYASVKKWDEVRKVRLKIKELGLK 837



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 240/432 (55%), Gaps = 24/432 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+ C  L  V +G  +H  +  +    +  + S  + +YA   + ++A ++FD+M
Sbjct: 300 TYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEM 359

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++IS Y + G+ E A+ L+ +M+  G +PD  T   V+ +CA L  +  
Sbjct: 360 PERDVAS--WNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLER 417

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H++ VR GF  DGFV +ALVDMY KCG +  A+ VF++I  K+++S+NSM+ GY  
Sbjct: 418 GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSL 477

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G      ++FR M   G  P    +SSIL   S    L++G  +HG+++R  VE D+ +
Sbjct: 478 KGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFV 537

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV 386
            +SLI +Y K G +  A  +F +MP+ +VVSWN +I  + K     EAL+ F  M + GV
Sbjct: 538 NSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGV 597

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEA 445
            PD +TF S+L AC+ L  ++ G+ + + ++E K  I+  V     ++++Y + G +DEA
Sbjct: 598 KPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEA 655

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELL 499
             +  +  E +   V W +++ A   HG        A KLFE       +PD +  F  +
Sbjct: 656 LHIFNQLPERDF--VSWTSMIAAYGSHGQA----FEALKLFEKMQQSDAKPD-KVTFLAI 708

Query: 500 IKIYGNAGRLDD 511
           +    +AG +D+
Sbjct: 709 LSACSHAGLVDE 720



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 192/347 (55%), Gaps = 17/347 (4%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G  +H+ I +  L+ N  +   L+ LY +  L   A  VF  + N       WN L++  
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITL-WNGLMAAC 272

Query: 170 AELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
            +   + + + ++ ++     ++PD FT+P VLKAC+GLG +  G+ VH   ++ GF  D
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V+++ V MYAKC     A  +FD +  +D+ S+N++++ Y   G   +A ++F  M +
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 289 NGFDPDPVAISSILAN-ASLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +GF PD V +++++++ A LL +  G ++H  ++R G   D  ++++L+ +Y K G L+ 
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHS--KDHEALI-YFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F+ + +K+VVSWNS+I  +S   D ++ I  F +M+ +G+ P   T  S+L AC+ 
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLIDEA 445
             ++++G+      +  Y I  RVE      + +++LY + G I  A
Sbjct: 513 SVNLQLGK-----FIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 554


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 254/448 (56%), Gaps = 9/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI   + TFAS L    +L +++H  ++H  I  + +  +  + S L+ +Y     +
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A +   Q S+         ++ISGY   G+ ++A+  +  + +E ++P   TF  +  
Sbjct: 312 EMAQKNLCQSSSFDTVVC--TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A AGL  + +G+++H   ++        V +A++DMYAKCG +  A  VF+RI  KD I 
Sbjct: 370 AFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC 429

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NSM+T    +G   EA ++FR M + G   D V+IS  L   AN   L  G ++HG ++
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  DL   +SLI +Y+K G L+ +  +FD M +K+ VSWNSII A   H    E L 
Sbjct: 490 KGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLA 549

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M R+G+ PDH+TF+ ++SAC H G V  G R + +M E+YGI  R+EHYAC+ +++
Sbjct: 550 LFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMF 609

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA+  I   M F     VWG LL AC++HGNV + E A++ LF+L+P N   +
Sbjct: 610 GRAGRLHEAFETI-NSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYY 668

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL  +   AG+   V +V  ++ +RG+
Sbjct: 669 VLLANVQAGAGKWRKVLKVRSIMKERGV 696



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 210/394 (53%), Gaps = 11/394 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++    TF  +++ C  LK+V+ G  +H  +    L+++  + S L++LYA  G + +A
Sbjct: 53  GVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDA 112

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD +  + +    WN +++GY + G+  +AI ++ +M    ++P+  TF  VL  CA
Sbjct: 113 QYLFDNIPQKDSVL--WNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCA 170

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              ++ +G ++H  AV  G   D  V N L+ MY+KC  +  AR +FD +   DL+S+N 
Sbjct: 171 SEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNG 230

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           +++GY+ +GL+ EA  +FRGMI  G  PD +  +S L   +    L+   ++HG+++R  
Sbjct: 231 IISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHA 290

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFE 379
           V  D+ + ++LI +Y K   ++ A          D V   ++I  +    K+ EAL  F 
Sbjct: 291 VVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFR 350

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + ++ + P  +TF S+  A A L ++ +G+ L   ++ K  +  +    + ++++Y + 
Sbjct: 351 WLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSII-KTKLDEKCHVGSAILDMYAKC 409

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G +D A  +     E +A  + W +++ +C  +G
Sbjct: 410 GRLDLACRVFNRITEKDA--ICWNSMITSCSQNG 441



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 169/315 (53%), Gaps = 18/315 (5%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G + +A  +F  +  +      WN +I G+  +G++  A+  Y +M   GV PD+
Sbjct: 1   MYVRTGSLKDAKNLFYTL--QLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDK 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           +TFP V+KAC GL  +++G+ VH      G   D FV ++L+ +YA+ G +  A+ +FD 
Sbjct: 59  YTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           I  KD + +N ML GY+ +G    A  IF  M  +   P+ V  + +L   A+ ++L +G
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
            Q+HG  +  G+E D  +AN+L+ +YSK   L  A  LFD +PQ D+VSWN II  + ++
Sbjct: 179 TQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               EA   F  M   G+ PD +TF S L     L S+K  + +   ++           
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIR---------- 288

Query: 429 YACMVNLYGRAGLID 443
           +A +++++ ++ LID
Sbjct: 289 HAVVLDVFLKSALID 303


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 244/438 (55%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA  L+ C    A+ +G ++H          +  +++ L  +Y   G ++    +F++M
Sbjct: 219 TFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM 278

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R   +  W ++I+   ++G+ E A+  + +M E  V P+++TF  V+  CA L  I  
Sbjct: 279 SMRDVVS--WTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEW 336

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H   +  G      V N+++ MYAKCG +  +  +F  +  +D++S+++++ GY  
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQ 396

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCI 329
            G + EAF++   M + G  P   A++S+L+   N ++L  G Q+H +VL  G+E    +
Sbjct: 397 GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMV 456

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            ++LI +Y K G +++A  +FD     D+VSW ++I+    H    E +  FE++ R G+
Sbjct: 457 LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGL 516

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF+ +LSAC+H G V +G R F+ M +KY ISP  EHY CM++L  RAG + +A 
Sbjct: 517 RPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAE 576

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            MI E M F    VVW  LL AC +HG+V  G   A+++ +LEP+       L  IY + 
Sbjct: 577 HMI-EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASK 635

Query: 507 GRLDDVERVERMLVDRGL 524
           G+  +   + +++  +G+
Sbjct: 636 GKWREAADIRKLMKSKGV 653



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 226/480 (47%), Gaps = 56/480 (11%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+ +     +   + C     V +G  LH       L  +  + S LL +Y   G I
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKI 167

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            E  +VF +M  R   +  W ++I+G    G  ++A+  + +M    VE D +TF   LK
Sbjct: 168 FEGRRVFHEMPMRNVVS--WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALK 225

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA  G +  G ++H  A++ GF    FV N L  MY KCG +    T+F+++  +D++S
Sbjct: 226 ACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVS 285

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVL 319
           + +++T  +  G    A   F  M  +   P+    +++++  A+L RI  G Q+H  +L
Sbjct: 286 WTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL 345

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
             G+   L + NS++ +Y+K G+L  +  +F  M ++D+VSW++II  +S+     EA  
Sbjct: 346 HLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFE 405

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA----CM 432
               M  +G  P      S+LSAC ++  ++ G++L +     Y +S  +EH A     +
Sbjct: 406 LLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHA-----YVLSIGLEHTAMVLSAL 460

Query: 433 VNLYGRAGLIDEAYSMIVEKME--------------------------FEASP------- 459
           +N+Y + G I+EA S I +  E                          FE  P       
Sbjct: 461 INMYCKCGSIEEA-SRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 460 -VVWGALLYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            V +  +L AC   G V +G     A  K +++ P  EH +  +I +   AGRL D E +
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEH-YGCMIDLLCRAGRLSDAEHM 578



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 198/405 (48%), Gaps = 13/405 (3%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-E 187
           S+K L+     G +  A ++FD+MS +   +  W +LISGY    +  +A+ L+  M  E
Sbjct: 52  SNKQLKELVKTGHLGNARRMFDKMSQKDEIS--WTTLISGYVNANDSSEALLLFKNMRVE 109

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+  D F      KAC     +  GE +H  AV+ G     FV +AL+DMY K G I +
Sbjct: 110 SGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFE 169

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
            R VF  +  ++++S+ +++TG +  G   EA   F  M  +  + D    +  L   A+
Sbjct: 170 GRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACAD 229

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           +  L  G ++H   +++G +    +AN+L  +Y+K GKL+    LF+ M  +DVVSW +I
Sbjct: 230 SGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTI 289

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I       ++  A+  F +M    V P+  TF +++S CA+L  ++ GE+L ++++   G
Sbjct: 290 ITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILH-LG 348

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG-ET 480
           ++  +     ++ +Y + G +  + S+I  +M      V W  ++      G+V    E 
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSS-SVIFHEMT-RRDIVSWSTIIAGYSQGGHVSEAFEL 406

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +    E     E     ++   GN   L+  +++   ++  GLE
Sbjct: 407 LSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLE 451



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQME 382
           DL  +N  +    K G L  A  +FD M QKD +SW ++I  +   +   EAL+ F+ M 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 383 -RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+  D         AC     V  GE L    V K G+   V   + ++++Y + G 
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAV-KTGLVNSVFVGSALLDMYTKNGK 166

Query: 442 IDEA 445
           I E 
Sbjct: 167 IFEG 170


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 256/448 (57%), Gaps = 9/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     T+  LL TC     +  G ++H L        +  +S  L+ +Y+ +G +
Sbjct: 337 VAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWL 396

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D+A ++ + +  +   +  W S+I+GY +    ++A+  +  M+  G+ PD       + 
Sbjct: 397 DKARRILEVLEAKDVVS--WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAIS 454

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAG+  +R G+++H      G+  D  + NALV++YA+CG   +A ++F+ I +KD I+
Sbjct: 455 ACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKIT 514

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASLLRI--GAQVHGWVL 319
           +N M++G+   GL  EA ++F  M   G   +    +SSI A+A+L  I  G Q+H  V+
Sbjct: 515 WNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI 574

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + G   +  +AN+LI +Y K G ++ A   F  M +++ VSWN+II +   H    EAL 
Sbjct: 575 KTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALD 634

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F+QM+++G+ P+ +TF+ +L+AC+H+G V+ G   F  M  ++GI PR +HYAC+V++ 
Sbjct: 635 LFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDIL 694

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +D A    VE+M   A+ +VW  LL AC +H N+ +GE AA+ L ELEP +  ++
Sbjct: 695 GRAGQLDRARK-FVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASY 753

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL   Y   G+    + V +M+ DRG+
Sbjct: 754 VLLSNAYAVTGKWACRDHVRKMMKDRGV 781



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 223/411 (54%), Gaps = 19/411 (4%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           +S ++  E    +G T    T ASLL  C  +  +  G +LH  +    +  +  I   L
Sbjct: 226 ESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSL 285

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           L LY   G+I EA ++F +  +RT     WN ++  Y ++ +   +  L+ QM   GV P
Sbjct: 286 LDLYVKCGVIVEALEIF-KSGDRTNVVL-WNLMLVAYGQISDLAKSFDLFCQMVAAGVRP 343

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           ++FT+P +L+ C   G I +GE++HL +++ GF  D +V   L+DMY+K G + KAR + 
Sbjct: 344 NEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
           + +  KD++S+ SM+ GY+ H    EA + F+ M L G  PD + ++S +   A    +R
Sbjct: 404 EVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMR 463

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G Q+H  V   G   D+ I N+L+ +Y++ G+  +A  LF+ +  KD ++WN ++   +
Sbjct: 464 QGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFA 523

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           +     EAL  F +M + GV  +  TFVS +SA A+L  +K G+++ + ++ K G +   
Sbjct: 524 QSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI-KTGCTSET 582

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEF----EASPVVWGALLYACYLHG 473
           E    +++LYG+ G I++A      KM+F    E + V W  ++ +C  HG
Sbjct: 583 EVANALISLYGKCGSIEDA------KMQFFEMSERNHVSWNTIITSCSQHG 627



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 210/424 (49%), Gaps = 31/424 (7%)

Query: 94  FASLLETCYQLKAVEHGIKLHR---------LIP-------TNLLRKNKGISSKLLRLYA 137
           FA+ +  C  L +V+    L           L+P       T  L +++   + L+ LYA
Sbjct: 29  FAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYA 88

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
             GL+  A +VF+Q+S R   +  W +++SGYA  G  E+A+ LY QM   GV P  +  
Sbjct: 89  KKGLVQRARRVFEQLSARDNVS--WVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVL 146

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             VL AC    L   G  VH    + G   +  V NAL+ +Y + G +  A  VF  +  
Sbjct: 147 SSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY 206

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASL--LRIGAQV 314
            D +++N++++ +   G    A +IF  M L+G+ PD V I+S+LA  AS+  L  G Q+
Sbjct: 207 CDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQL 266

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           H ++L+ G+  D  I  SL+ +Y K G + +A  +F    + +VV WN ++ A+ +  + 
Sbjct: 267 HSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL 326

Query: 375 LIYFE---QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
              F+   QM   GV P+  T+  LL  C + G + +GE++  + + K G    +     
Sbjct: 327 AKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSI-KTGFESDMYVSGV 385

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC---MGETAAQKLFEL 488
           ++++Y + G +D+A   I+E +  EA  VV    + A Y+    C   +      +LF +
Sbjct: 386 LIDMYSKYGWLDKA-RRILEVL--EAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGI 442

Query: 489 EPDN 492
            PDN
Sbjct: 443 WPDN 446


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/389 (37%), Positives = 235/389 (60%), Gaps = 10/389 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKA 203
           AH+VF ++  +    F WN+LI GYAE+G    A +LY +M   G VEPD  T+P ++KA
Sbjct: 72  AHKVFSKI-EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +  +R+GE +H   +R GFG   +V N+L+ +YA CGD+  A  VFD++  KDL+++
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NS++ G+  +G   EA  ++  M   G  PD   I S+L   A    L +G +VH ++++
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G+  +L  +N L+ +Y++ G++++A  LFD M  K+ VSW S+I   + +    EA+  
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

Query: 378 FEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           F+ ME  +G+LP  +TFV +L AC+H G VK G   F  M E+Y I PR+EH+ CMV+L 
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            RAG + +AY  I + M  + + V+W  LL AC +HG+  + E A  ++ +LEP++  ++
Sbjct: 371 ARAGQVKKAYEYI-KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDY 429

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  +Y +  R  DV+++ + ++  G++
Sbjct: 430 VLLSNMYASEQRWSDVQKIRKQMLRDGVK 458



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 174/334 (52%), Gaps = 25/334 (7%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRL 135
           E  V   +   T T+  L++    +  V  G  +H ++    +R   G    + + LL L
Sbjct: 110 EMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV----IRSGFGSLIYVQNSLLHL 165

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G +  A++VFD+M  +   A  WNS+I+G+AE G+ E+A+ALY +M  +G++PD F
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVA--WNSVINGFAENGKPEEALALYTEMNSKGIKPDGF 223

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   +L ACA +G + +G++VH+  ++ G   +    N L+D+YA+CG + +A+T+FD +
Sbjct: 224 TIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSILANASLLRIGAQV 314
            +K+ +S+ S++ G   +G   EA ++F+ M    G  P  +    IL   S   +  + 
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343

Query: 315 HGWVLRRGVEWDL--------CIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
             +  R   E+ +        C+ + L    ++ G++ +A      MP Q +VV W +++
Sbjct: 344 FEYFRRMREEYKIEPRIEHFGCMVDLL----ARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399

Query: 366 HAHSKDHEA-LIYFEQMERDGVLPDHLTFVSLLS 398
            A +   ++ L  F +++   + P+H     LLS
Sbjct: 400 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 433


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 256/438 (58%), Gaps = 15/438 (3%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR---LYATFGLIDEAHQVFDQM 152
           SLL  C  L  ++  I+ +  I TNL + +  + +KL+    L  T   +D AH +FDQ+
Sbjct: 34  SLLSKCTSLNELKQ-IQAYT-IKTNL-QSDISVLTKLINFCTLNPTTSYMDHAHHLFDQI 90

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++    F  N +  GYA       A +L+ ++   G+ PD +TF  +LKACA    +R 
Sbjct: 91  LDKDIILF--NIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALRE 148

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H  AV+ G   + ++   L++MYA+C D+  AR VFD +    ++SYN+++TGY  
Sbjct: 149 GMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYAR 208

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
                EA  +FR +  +  +P  V + S++ + +L   L +G  +H +V ++G +  + +
Sbjct: 209 SSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKV 268

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +LI +++K G L  A  +F+ M  +D  +W+++I A   H    +A+  FE+M+R+GV
Sbjct: 269 NTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGV 328

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF+ LL AC+H G V+ G   F  M + YGI+P ++HY CMV+L GRAG +DEAY
Sbjct: 329 RPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAY 388

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           +  V+K+E +A+P++W  LL AC  HGNV M +   +++FEL+  +  ++ +L  +Y   
Sbjct: 389 NF-VDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARV 447

Query: 507 GRLDDVERVERMLVDRGL 524
           GR +DV  + +++ DRG+
Sbjct: 448 GRWEDVNHLRKLMKDRGV 465



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 47/364 (12%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF+SLL+ C   KA+  G+ LH       L  N  I   L+ +YA    ++ 
Sbjct: 124 SGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNA 183

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VFD+M      ++  N++I+GYA   +  +A++L+ +++   +EP   T   V+ +C
Sbjct: 184 ARGVFDEMEQPCIVSY--NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSC 241

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A LG + +G+ +H    + GF     V  AL+DM+AKCG +  A ++F+ +  +D  +++
Sbjct: 242 ALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWS 301

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           +M+  +  HG  ++A  +F  M   G  PD +    +L   S   +  Q  G+       
Sbjct: 302 AMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKT 361

Query: 325 WDLCIA----NSLIVVYSKDGKLDQACWLFDHMPQKDV-VSWNSIIHAHSKDHEALIYFE 379
           + +         ++ +  + G LD+A    D +  K   + W                  
Sbjct: 362 YGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWR----------------- 404

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE---KYGISPRVEHYACMVNLY 436
                          +LLSAC+  G+V++ +R+   + E    +G       Y  + NLY
Sbjct: 405 ---------------TLLSACSTHGNVEMAKRVIERIFELDDAHG-----GDYVILSNLY 444

Query: 437 GRAG 440
            R G
Sbjct: 445 ARVG 448


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 231/389 (59%), Gaps = 9/389 (2%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +  A  +FD++S  +     WN+L+SGY +  +++D I L+ +M+ + V+PD+ T   +L
Sbjct: 367 VHSARAMFDKISRPSVTT--WNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVIL 424

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            +C+ LG++  G +VH  +VRF    D FV + LVDMY+KCG I  AR++F+++  +D++
Sbjct: 425 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV 484

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
            +NS+++G   H L  EAFD F+ M  NG  P   + +S++ + S L     G Q+H  V
Sbjct: 485 CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQV 544

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
           ++ G + ++ + ++LI +Y+K G +D A   FD M  K++V+WN +IH ++++    +A+
Sbjct: 545 MKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAV 604

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE M      PD +TF+++L+ C+H G V      F+ M   YGI P  EHY C+++ 
Sbjct: 605 ELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDA 664

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG   E  ++I  KM  +  P++W  LL AC +H N  +G+ AA+ LF ++P N   
Sbjct: 665 LGRAGRFVEVEALI-HKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSP 723

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + LL  IY + GR  D   V  ++ +RG+
Sbjct: 724 YVLLSNIYASLGRHGDASAVRALMSNRGV 752



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 214/431 (49%), Gaps = 58/431 (13%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI----KLHRLIPTNLLRKNK 126
           ++D  ++      ++G+ V   + +S+L  C Q  A ++ +    +L + I   ++RK  
Sbjct: 222 SIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGF 281

Query: 127 G----ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           G    + + L+ +Y     +DEA +VF+ + + T  +  WN LI+G+ + G    A+ + 
Sbjct: 282 GSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVS--WNILITGFGQEGSCAKAVEVL 339

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
             M+E G EP++ T+  +L +C                                    K 
Sbjct: 340 SLMQEAGFEPNEVTYSNLLASCI-----------------------------------KA 364

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
            D+  AR +FD+I    + ++N++L+GY       +  ++FR M      PD   ++ IL
Sbjct: 365 RDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVIL 424

Query: 303 ANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           ++ S L I   G QVH   +R  +  D+ +A+ L+ +YSK G++  A  +F+ M ++DVV
Sbjct: 425 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV 484

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            WNSII     HS + EA  +F+QM  +G++P   ++ S++++C+ L S+  G ++ +  
Sbjct: 485 CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHA-Q 543

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V K G    V   + ++++Y + G +D+A  +  + M  + + V W  +++    +G   
Sbjct: 544 VMKDGYDQNVYVGSALIDMYAKCGNMDDA-RLFFDTMMMK-NIVAWNEMIHGYAQNG--- 598

Query: 477 MGETAAQKLFE 487
           +G+ A + LFE
Sbjct: 599 LGDKAVE-LFE 608



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 148/289 (51%), Gaps = 17/289 (5%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFP 198
           G +D A  +   M  R A +  WN++IS  A   G+  +A+ +Y +M  EG+ P  FT  
Sbjct: 88  GDLDAARDLLGGMPRRNAVS--WNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLA 145

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL AC GL  +  G + H  AV+ G   + FV NAL+ MY KCG +  A  +F  +   
Sbjct: 146 SVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARP 205

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-----------ASL 307
           + +S+ +M+ G    G + +A  +F  M  +G   DPV++SS+L             A  
Sbjct: 206 NEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARA 265

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
            R+G  +H  V+R+G   D  + NSLI +Y+K  ++D+A  +F+ +P   +VSWN +I  
Sbjct: 266 FRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITG 325

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
             ++    +A+     M+  G  P+ +T+ +LL++C     V     +F
Sbjct: 326 FGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMF 374



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 20/256 (7%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NGI     ++AS++ +C +L ++ HG ++H  +  +   +N  + S L+ +YA  G +D
Sbjct: 511 ENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMD 570

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   FD M  +   A  WN +I GYA+ G  + A+ L+  M     +PD  TF  VL  
Sbjct: 571 DARLFFDTMMMKNIVA--WNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTG 628

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           C+  GL+        +++   +G          L+D   + G  V+   +  ++  K D 
Sbjct: 629 CSHSGLVDKA-MAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDP 687

Query: 261 ISYNSMLTG-YIHHGLLV---EAFDIFRGMILNGFDPDP-VAISSILA------NASLLR 309
           I +  +L    +HH   +    A  +FR   ++  +P P V +S+I A      +AS +R
Sbjct: 688 IIWEVLLAACVVHHNAELGKCAAEHLFR---IDPKNPSPYVLLSNIYASLGRHGDASAVR 744

Query: 310 IGAQVHGWVLRRGVEW 325
                 G V  RG  W
Sbjct: 745 ALMSNRGVVKGRGYSW 760



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD----HEALIYFEQMERDGV 386
           N+ +    + G LD A  L   MP+++ VSWN++I A ++      EA+  + +M  +G+
Sbjct: 78  NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           LP H T  S+LSAC  L ++  G R   V V K G+         ++ +Y + G + +A
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAV-KVGLDANQFVENALLGMYTKCGSVGDA 195


>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 234/418 (55%), Gaps = 12/418 (2%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFG-LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           RL+ T+L   N  +SSKLL +Y+  G L   +  VF  M +R  ++  WN +I  ++   
Sbjct: 33  RLLRTSLY-DNVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYS--WNIIIGEFSRSH 89

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
               +I L+ QM      PD FT P VL+ACA  G +++G  VH   V  G     FV +
Sbjct: 90  LPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVAS 149

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           ALV MY   G ++ AR +FD +  +D + + +ML GY  H   + A  +FR M+  G   
Sbjct: 150 ALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVAL 209

Query: 294 DPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D V  IS +LA   L  L+ G  VHGW+ RR +   L + N+L+  Y K   L  +  LF
Sbjct: 210 DGVVMISLLLACGQLGWLKHGKSVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLF 269

Query: 351 DHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           D MP++DV+SW+SII  +        AL  F++M   GV P+ +TF+  LSAC H G V+
Sbjct: 270 DKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVE 329

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
                F +M E YG++P ++HYACMV+  GRAG++++A   I E+M  EA   V GALL 
Sbjct: 330 RAHTYFEMMKE-YGVAPELKHYACMVDCLGRAGMLEDAERFI-EEMPVEADGAVLGALLG 387

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            C +HGN  +GE  A+KL  LEP+   N+ +L  IY  AGR +D E+V +++  R L 
Sbjct: 388 GCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLS 445



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 163/357 (45%), Gaps = 40/357 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   +L  C    +V+ G+ +H L     + K+  ++S L+ +Y TFG + +A  +FD+M
Sbjct: 112 TLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEM 171

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R A    W ++++GYA+  E   A++++ QM   GV  D      +L AC  LG ++ 
Sbjct: 172 PERDAVL--WTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKH 229

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH    R        + NALV  Y KC  +  +  +FD++  +D+IS++S++ GY  
Sbjct: 230 GKSVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGL 289

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGW---VLRRGVEWDLCI 329
            G +  A D+F  M + G  P+ V     L+  +   +  + H +   +   GV  +L  
Sbjct: 290 SGNVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYFEMMKEYGVAPELKH 349

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389
              ++    + G L+ A    + MP                          +E DG +  
Sbjct: 350 YACMVDCLGRAGMLEDAERFIEEMP--------------------------VEADGAV-- 381

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEA 445
                +LL  C   G+ +VGER+   ++   G+ P +  +Y  + N+Y  AG  ++A
Sbjct: 382 ---LGALLGGCRVHGNAEVGERVAKKLM---GLEPEKASNYVMLANIYAGAGRFEDA 432



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+ +      SLL  C QL  ++HG  +H  I    L     + + L+  Y     +
Sbjct: 203 VSAGVALDGVVMISLLLACGQLGWLKHGKSVHGWITRRCLALGLNLGNALVYFYVKCAAL 262

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             ++ +FD+M  R   +  W+S+I GY   G  + A+ L+ +M   GV+P+  TF   L 
Sbjct: 263 GYSYNLFDKMPERDVIS--WSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLGALS 320

Query: 203 ACAGLGLIRVGEKVH 217
           AC   G++   E+ H
Sbjct: 321 ACTHTGMV---ERAH 332


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/478 (34%), Positives = 266/478 (55%), Gaps = 25/478 (5%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTET-----------FASLLETCYQLKAVEHGIKLHR 115
           TK Q  + II+    S +  IT Q                 LL +  + +++  G ++H 
Sbjct: 19  TKSQHQNPIIKTQSLSQEGTITPQNSPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHA 78

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            I  + L+    +   L+  Y+   L   + QVF++   +++    W+S+IS +A+  E 
Sbjct: 79  HIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTT--WSSVISSFAQNEEP 136

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
             AI  + +M  E + PD   FP   KACA LG   VG+ VH   ++ G+  D FV ++L
Sbjct: 137 VLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSL 196

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           VDMYAKCGDI +AR VFD + +++++S++ M+ GY   G   EA  +F+  +L G D + 
Sbjct: 197 VDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVND 256

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
             +SS++    +A+LL +G Q+HG   +   +    + +SLI +YSK G ++ A  +FD 
Sbjct: 257 FTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDE 316

Query: 353 MPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           +P K++  WN+++     HAH+K  EA   F +ME  G+ P+ +TF+ +L AC+H G V+
Sbjct: 317 VPIKNLGMWNAMLIACAQHAHTK--EAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVE 374

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G++ F++M +KY I P  +HYA MV+L GRAG + EA S +++ M  E +  VWGA + 
Sbjct: 375 EGKKYFALM-KKYEIEPGTQHYASMVDLLGRAGKLQEALS-VIKGMPTEPTESVWGAFIT 432

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            C +HGN  +   AA K+FEL   +     +L   Y  AGR +D  +  +ML DRG++
Sbjct: 433 GCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVK 490


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 262/492 (53%), Gaps = 30/492 (6%)

Query: 40  RNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLE 99
           R  +   SS P S P  L    K+     L  L + +  L  ++++G      T  +LL 
Sbjct: 356 RASVAPRSSVPASLPAAL----KSCAGLGLCTLAASLHAL--AIRSGSFADRFTANALLN 409

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
            C +L    H         TN      G+ S            +   +VFD+M  R A +
Sbjct: 410 LCIKLPGFHHPFG------TNGPSGEGGLES---------AAYESMRKVFDEMLERDAVS 454

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WN+LI G AE   +++A+++  +M  +G  PD FT   VL   A    I+ G  VH  
Sbjct: 455 --WNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGY 512

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++ GF  D FV ++L+DMYA C  +  +  VFD   + D + +NSML GY  +G + EA
Sbjct: 513 AIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEA 572

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             IFR M+  G  P PV  SS++    N SLLR+G Q+H +++R     ++ I++SLI +
Sbjct: 573 LGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDM 632

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y K G +D A  +F+ +   D+VSW ++I     H    EA + FE+ME   V P+H+TF
Sbjct: 633 YCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITF 692

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +++L+AC+H G V  G + F+ M  +YG  P +EH A + +  GRAG +DEAY+ I E M
Sbjct: 693 LAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISE-M 751

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
           + + +  VW  LL AC +H N  + E  A+K+FELEP +  +  +L  +Y  +GR ++  
Sbjct: 752 KIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAA 811

Query: 514 RVERMLVDRGLE 525
           ++ + +  +G++
Sbjct: 812 QLRKSMRIKGMK 823


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 239/436 (54%), Gaps = 9/436 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   LL    +L  V    +LH  I  +    N  + S L+  YA FGL+DEA   FD++
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+R      WN ++S YA  G    A  ++  M  EGV+ D FTF  ++ +C  LG   +
Sbjct: 240 SSRDLVL--WNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGL 297

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   +R  F  D  V +ALVDMY+K  +I  AR  FD +  K+++S+ +M+ GY  
Sbjct: 298 GKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQ 357

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA---QVHGWVLRRGVEWDLCI 329
           HG   EA  + + MI     PD +A++SIL++   L   +   QVH +V+  G E  L I
Sbjct: 358 HGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSI 417

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
           AN+L+  YSK G +  A   F  + + D++SW S++ A   H    E +  FE+M    V
Sbjct: 418 ANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNV 477

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD + F+ +LSACAH G V  G   F++M+  Y I P  EHY C+++L GRAG +DEA 
Sbjct: 478 RPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAI 537

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           +++   M  E      GA L AC +H NV +   A++KLF +EP+   N+ L+  +Y + 
Sbjct: 538 NLLT-SMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASV 596

Query: 507 GRLDDVERVERMLVDR 522
           G   DV RV +++ +R
Sbjct: 597 GHWFDVARVRKLMRER 612



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 248/533 (46%), Gaps = 73/533 (13%)

Query: 43  ITTFSSYPKSSPTPLLTNQKAF-------PKTKLQALDSIIQDLESSVQNGIT-----VQ 90
           I  F S+  +SPTP  T   A        P  +  +   +     S  + G T       
Sbjct: 12  IANFKSHSSASPTPSPTLTGATKNAPSHDPHRQSHSFPYLGGLRASLPETGFTNLVDSCS 71

Query: 91  TETFAS-LLETCYQLKAVEHGIKLH----RLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           T +F+S  L+   +L  +  G +LH    +L   NLL     + +++L +Y      ++ 
Sbjct: 72  THSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLS----LQNQVLHVYVKCKEFNDV 127

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL----YF-QMEEEGVEPDQFTFPRV 200
            ++FD+M  +   +  WN+LI G  E G  + A+      YF QM  E + P+  T   +
Sbjct: 128 CKMFDEMPLKNVVS--WNTLICGVVE-GNCKFALVRLGFHYFRQMVLEMMAPNCITLNGL 184

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L+A   L  + +  ++H   ++ GF  + FV +ALVD YAK G + +A++ FD + ++DL
Sbjct: 185 LRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDL 244

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGW 317
           + +N M++ Y  +G+  +AF +F+ M L G   D    +S++ +  +L    +G QVHG 
Sbjct: 245 VLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGL 304

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           ++R   + D+ +A++L+ +YSK+  ++ A   FD M  K++VSW ++I     H    EA
Sbjct: 305 IIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEA 364

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +   ++M R    PD L   S+LS+C +L +     ++ + +VE  G    +     +V+
Sbjct: 365 MRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVEN-GFEAFLSIANALVS 423

Query: 435 LYGRAGLIDEAYSM------------------------------IVEKMEFE---ASPVV 461
            Y + G I  A+                                + EKM F       V 
Sbjct: 424 AYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVA 483

Query: 462 WGALLYACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           +  +L AC   G V  G         ++++ PD+EH +  +I + G AG LD+
Sbjct: 484 FLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEH-YTCIIDLLGRAGFLDE 535


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 252/448 (56%), Gaps = 13/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ + T T AS+L  C Q   V +G+ +H  +  + L  +  +S+ L+ +Y+ FG + +A
Sbjct: 217 GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFDQM  R   +  WNS+I+ Y +  +   A+  +  M+  G+ PD  T   +    +
Sbjct: 277 QMVFDQMEVRDLVS--WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 206 GLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            L   R+   +    +R  +   D  + NALV+MYAK G +  A TVFD++  KD IS+N
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWN 394

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQVHGWVL 319
           +++TGY  +GL  EA D +  M+    D  P     V+I    ++   L+ G ++H  ++
Sbjct: 395 TLVTGYTQNGLASEAIDAY-NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  D+ +A  LI +Y K G+L+ A  LF  +P+   V WN+II +   H +  EAL 
Sbjct: 454 KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQ 513

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F+ M  + V  DH+TFVSLLSAC+H G V  G++ F +M ++YGI P ++HY CMV+L 
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLL 573

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +++AY + V  M  +    +WGALL AC ++GN  +G  A+ +L E++ +N   +
Sbjct: 574 GRAGYLEKAYEL-VRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYY 632

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL  IY N  + + V +V  +  DRGL
Sbjct: 633 VLLSNIYANTEKWEGVIKVRSLARDRGL 660



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 227/402 (56%), Gaps = 25/402 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  L     G K+H  +       +  +++ L+ LY+ +G++D AH+VF  M
Sbjct: 126 TFPPILKACVSLV---DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM 182

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  WN++ISG+ + G    A+ +  +M+ EGV+ D  T   +L  CA    +  
Sbjct: 183 PVKDVGS--WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVIN 240

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +HL  ++ G   D FV NAL++MY+K G +  A+ VFD++  +DL+S+NS++  Y  
Sbjct: 241 GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQ 300

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEW---D 326
           +     A   F+GM L G  PD    V+++SI +  S  RI   + G+V+RR  EW   D
Sbjct: 301 NNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR--EWLDKD 358

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME- 382
           + I N+L+ +Y+K G ++ A  +FD +P+KD +SWN+++  ++++    EA+  +  ME 
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418

Query: 383 -RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            RD  +P+  T+VS++ A +H+G+++ G ++ + ++ K  +   V    C+++LYG+ G 
Sbjct: 419 CRD-TIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI-KNSLYLDVFVATCLIDLYGKCGR 476

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           +++A S+  E     + P  W A++ +  +HG    GE A Q
Sbjct: 477 LEDAMSLFYEIPRDTSVP--WNAIIASLGIHGR---GEEALQ 513



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 226/448 (50%), Gaps = 32/448 (7%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F +L  +C  + A +   KLH L+      +N  +S+KL+ LY T G I  +   FD + 
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 154 NRTAFAFPWNSLISGYAELGEYEDA---IALYFQMEEEG-VEPDQFTFPRVLKACAGLGL 209
            +  F+  WNS+IS Y   G+Y +A   +   F M   G + PD +TFP +LKAC  L  
Sbjct: 82  KKNIFS--WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL-- 137

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
              G+KVH    + GF  D FV  +LV +Y++ G +  A  VF  +  KD+ S+N+M++G
Sbjct: 138 -VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           +  +G    A  +   M   G   D + ++SIL   A +  +  G  +H  VL+ G++ D
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMER 383
           + ++N+LI +YSK G+L  A  +FD M  +D+VSWNSII A+ ++++   AL +F+ M+ 
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD LT VSL S  + L   ++   +   ++ +  +   V     +VN+Y + G ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 444 EAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPD---NEHNF 496
            A+++      F+  P    + W  L+   Y    +      A  + E   D   N+  +
Sbjct: 377 CAHTV------FDQLPRKDTISWNTLVTG-YTQNGLASEAIDAYNMMEECRDTIPNQGTW 429

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
             +I  Y + G L    ++   L+   L
Sbjct: 430 VSIIPAYSHVGALQQGMKIHAKLIKNSL 457


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 253/439 (57%), Gaps = 13/439 (2%)

Query: 94  FASLLE--TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           F S+L   TCY L  V  G ++H L   N L     +++ L+ +Y   G +++A + F+ 
Sbjct: 222 FTSVLSALTCYML--VNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFEL 279

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
             N+ +    W+++++G+A+ G+ + A+ L++ M + G  P +FT   V+ AC+    I 
Sbjct: 280 SGNKNSIT--WSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIV 337

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G ++H  +++ G+    +VL+ALVDMYAKCG IV AR  F+ I   D++ + S++TGY+
Sbjct: 338 EGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYV 397

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G    A +++  M L G  P+ + ++S+L   +N + L  G Q+H  +++     ++ 
Sbjct: 398 QNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIP 457

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           I ++L  +Y+K G LD    +F  MP +DV+SWN++I   S++   +E L  FE+M  +G
Sbjct: 458 IGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEG 517

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             PD++TFV+LLSAC+H+G V  G   F +M +++ I+P VEHYACMV++  RAG + EA
Sbjct: 518 TKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEA 577

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I E    +    +W  LL A   H +  +G  A +KL EL       + LL  IY  
Sbjct: 578 KEFI-ESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTA 636

Query: 506 AGRLDDVERVERMLVDRGL 524
            G+ +DVERV  M+  RG+
Sbjct: 637 LGKWEDVERVRGMMKARGV 655



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/483 (28%), Positives = 230/483 (47%), Gaps = 49/483 (10%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I     T   +      L     G + H L        +   +S LL +Y   GL+ EA 
Sbjct: 112 IVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEAR 171

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKAC 204
            +FD+M  R A +  W ++ISGYA     ++A  L+  M  EE+G   ++F F  VL A 
Sbjct: 172 DLFDEMPERNAVS--WATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSAL 229

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
               L+  G +VH  A++ G      V NALV MY KCG +  A   F+  GNK+ I+++
Sbjct: 230 TCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWS 289

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRR 321
           +M+TG+   G   +A  +F  M  +G  P     V + +  ++A  +  G Q+HG+ L+ 
Sbjct: 290 AMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKL 349

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYF 378
           G E  L + ++L+ +Y+K G +  A   F+ + Q DVV W SII  +  + D+E AL  +
Sbjct: 350 GYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLY 409

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M+  GV+P+ LT  S+L AC++L ++  G+++ + ++ KY  S  +   + +  +Y +
Sbjct: 410 GKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGII-KYNFSLEIPIGSALSAMYAK 468

Query: 439 AGLIDEAYSM------------------------------IVEKMEFEASP---VVWGAL 465
            G +D+ Y +                              + EKM  E +    V +  L
Sbjct: 469 CGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNL 528

Query: 466 LYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVD 521
           L AC   G V  G    + +F+   + P  EH +  ++ I   AG+L +  E +E   VD
Sbjct: 529 LSACSHMGLVDRGWVYFKMMFDEFNIAPTVEH-YACMVDILSRAGKLHEAKEFIESATVD 587

Query: 522 RGL 524
            GL
Sbjct: 588 HGL 590



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 217/462 (46%), Gaps = 50/462 (10%)

Query: 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           C + K +  G  LH  I       +  I++ L+ LYA      +A+ VFD ++N+   + 
Sbjct: 20  CTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVS- 78

Query: 161 PWNSLISGYAELGEYEDAIA---LYFQ--MEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            WN LI+ +++   +  ++    L+ Q  M  + + P+  T   V  A + L   R G +
Sbjct: 79  -WNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQ 137

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            H  AV+     D F  ++L++MY K G + +AR +FD +  ++ +S+ +M++GY    L
Sbjct: 138 AHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQEL 197

Query: 276 LVEAFDIFRGMI--LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIA 330
             EAF++F+ M     G + +    +S+L+  +   L+  G QVH   ++ G+   + +A
Sbjct: 198 ADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVA 257

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVL 387
           N+L+ +Y K G L+ A   F+    K+ ++W++++   ++     +AL  F  M + G L
Sbjct: 258 NALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGEL 317

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA-- 445
           P   T V +++AC+   ++  G ++    + K G   ++   + +V++Y + G I +A  
Sbjct: 318 PSEFTLVGVINACSDACAIVEGRQMHGYSL-KLGYELQLYVLSALVDMYAKCGSIVDARK 376

Query: 446 -------------YSMI---VEKMEFEASPVVWGALLYACYLHGNVCMGET--AAQKLFE 487
                         S+I   V+  ++E +  ++G +     +  ++ M     A   L  
Sbjct: 377 GFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAA 436

Query: 488 LEPDNE-------HNFELLIKI-------YGNAGRLDDVERV 515
           L+   +       +NF L I I       Y   G LDD  R+
Sbjct: 437 LDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRI 478



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 16/281 (5%)

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           R L  C     +R G  +H   +  G      + N+L+++YAKC    KA  VFD I NK
Sbjct: 15  RALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNK 74

Query: 259 DLISYNSMLTGYIH---HGLLVEAFDIFRGMIL--NGFDPDPVAISSILANASLL---RI 310
           D++S+N ++  +     H   +    +FR +++      P+   ++ +   AS L   R 
Sbjct: 75  DVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRA 134

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q H   ++     D+  A+SL+ +Y K G + +A  LFD MP+++ VSW ++I  ++ 
Sbjct: 135 GRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYAS 194

Query: 371 DH---EALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
                EA   F+ M  E  G   +   F S+LSA      V  G ++ S+ + K G+   
Sbjct: 195 QELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAM-KNGLVCI 253

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           V     +V +Y + G +++A      ++    + + W A++
Sbjct: 254 VSVANALVTMYVKCGSLEDALKTF--ELSGNKNSITWSAMV 292


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 253/439 (57%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T  + +  C++   + +  +LH   +    +  N+ +++  +  YA  G +  AH+VF  
Sbjct: 394 TILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCS 453

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + ++T  +  WN+LI GY++  +   ++  YFQM+  G+ PD FT   +L AC+ +  ++
Sbjct: 454 IRSKTVNS--WNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLK 511

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G++VH   +R     D FV  +L+ +Y  CG++  A  +FD + +K L+S+N+M+ GY+
Sbjct: 512 LGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLC 328
            +G    A  +FR M+L G  P  +++ S+    SLL   R+G + HG+ L+  +E +  
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           IA S+I +Y+K+G + ++  +F+ + ++ V SWN+++     H +  EA+  FE+M+R G
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTG 691

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             PD LTF+ +L+AC H G V  G      M   +G++P ++HYAC++++  RAG +DEA
Sbjct: 692 HCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEA 751

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +  E+M  E    +W  LL +C +H N+ MGE  A KLF  EP+   N+ LL  +Y  
Sbjct: 752 LKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAG 811

Query: 506 AGRLDDVERVERMLVDRGL 524
           +G+ D+V +V + + +  L
Sbjct: 812 SGKWDEVRKVRQRMKEMSL 830



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 180/350 (51%), Gaps = 17/350 (4%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           P+  LQ ++   ++ E S  +   +  E    LL+   + K ++ G K+H+L+  +    
Sbjct: 56  PQGVLQVIEEFDRE-EKSSSDAFLLLREALGLLLQASGRRKDIQLGRKIHQLVSESARLS 114

Query: 125 NKGI-SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           N  +  ++++ +Y+  G  D++  VFD +  R    F WN++IS Y+    Y + + ++ 
Sbjct: 115 NDDVLCTRVITMYSMCGSPDDSRSVFDAL--RKKNLFQWNAVISSYSRNELYHNVLEMFV 172

Query: 184 QM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           +M  E G+ PD FTFP V+KACAG+  ++VG  VH   V+     D FV NALV  Y   
Sbjct: 173 KMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTN 232

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN----GFDPDPVAI 298
           G +  A  VF  +  ++L+S+NSM+  +  +GL  E F +   M+       F PD   +
Sbjct: 233 GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATL 292

Query: 299 SSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +++L   A    + +G  VHG  ++  ++ ++ + N+L+ +YSK G ++ A  +F     
Sbjct: 293 ATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNN 352

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDG--VLPDHLTFVSLLSAC 400
           K+VVSWN+++   S     H+      QM   G  +  D +T ++ +  C
Sbjct: 353 KNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 308 LRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
           +++G ++H  V     +  D  +   +I +YS  G  D +  +FD + +K++  WN++I 
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 367 AHSKD---HEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
           ++S++   H  L  F +M    G+LPD+ TF  ++ ACA +  V+VG  +  ++V K  +
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVV-KTRL 215

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              V     +V+ YG  G + +A  + V K+  E + V W +++
Sbjct: 216 VEDVFVSNALVSFYGTNGSVSDA--LRVFKIMPERNLVSWNSMI 257


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 266/483 (55%), Gaps = 45/483 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     T+ S+L+ C +L   + G+ +H+ I  + ++ +  + + L+ +Y  FG +
Sbjct: 185 LSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGRFGKL 244

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV-- 200
           + A ++FD M  R   +  WN++IS YA  G +++A  L+  M E G+E +   +  +  
Sbjct: 245 EVARELFDIMPARDDVS--WNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAG 302

Query: 201 --------------------------------LKACAGLGLIRVGEKVHLDAVRFGFGFD 228
                                           L AC+ +G +++G+++H  AVR  F   
Sbjct: 303 GCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVF 362

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V N L+ MY++C D+  A  +F +I  K LI++N+ML+G+ H     E   + R M+ 
Sbjct: 363 DNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLR 422

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD--LCIANSLIVVYSKDGKL 343
            G +P+ V I+SIL   A  + L+ G + H ++++R  ++   L + NSL+ +YS+ GK+
Sbjct: 423 EGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKV 482

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAH--SKDHE-ALIYFEQMERDGVLPDHLTFVSLLSAC 400
            +A  +FD + +KD V++ S+I  +  S D E AL  F +M R  + PDH+T V++L AC
Sbjct: 483 LEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIAC 542

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G V  G+ LF  M+E YGI PRVEHY+CMV+L+GRAGL+D+A  +I   M  + +  
Sbjct: 543 SHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVIT-GMSCKPTSA 601

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           +W  L+ AC +HGN  +GE AA KL E++PD+   + L+  +Y  A RLD        + 
Sbjct: 602 IWATLIGACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAANRLDKEAEARTYMR 661

Query: 521 DRG 523
           D G
Sbjct: 662 DSG 664



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 230/496 (46%), Gaps = 80/496 (16%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL  C  LK++  G ++H  I +  + +N  + SKL+  YA+  L+ +A Q+  + SN +
Sbjct: 98  LLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADA-QIVAECSN-S 155

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                WN +IS Y +   +EDAI++Y +M  +GV PD +T+P VLKAC  L     G  V
Sbjct: 156 FDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAV 215

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H         +  FV NALV MY + G +  AR +FD +  +D +S+N+M++ Y   GL 
Sbjct: 216 HKAIQESSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLW 275

Query: 277 VEAFDIFRGMILNGFDPDPVAISSI----------------------------------- 301
            EAF +F  M   G + + +  ++I                                   
Sbjct: 276 DEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGL 335

Query: 302 --LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              ++   +++G ++HG  +R   +    + N+LI +YS+   L+ A  LF  + +K ++
Sbjct: 336 NACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLI 395

Query: 360 SWNSIIH--AH-SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER----- 411
           +WN+++   AH  +  E      +M R+GV P+++T  S+L  CA + +++ G+      
Sbjct: 396 TWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYM 455

Query: 412 ------------LFSVMVEKYGISPRVEH---------------YACMVNLYGRAGLIDE 444
                       L++ +VE Y  S +V                 Y  M+  YG +G  + 
Sbjct: 456 VKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGET 515

Query: 445 AYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELL 499
           A  +  E       P  V   A+L AC   G V  G+   +K+ E   ++P  EH +  +
Sbjct: 516 ALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEH-YSCM 574

Query: 500 IKIYGNAGRLDDVERV 515
           + ++G AG LD  + V
Sbjct: 575 VDLFGRAGLLDKAKEV 590


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 253/473 (53%), Gaps = 47/473 (9%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           + E FASL++   + K+V H +++H  +    L  N  ++ KL R YA  G +D +  VF
Sbjct: 46  EVERFASLID---KSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVF 102

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           +       F+F  +++I  + +   ++ A   Y QM   GVEP+ FTF  VLK+C+    
Sbjct: 103 NTFDEPNVFSF--SAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS---- 156

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT- 268
           +  G+ +H  A++ G G D +V   LVD+YA+ GD+V AR +FD++  + L+S  +MLT 
Sbjct: 157 LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 269 ------------------------------GYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
                                         GY   G+  E+  +FR M++    P+ V +
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 299 SSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
            ++L+       L  G  +H ++  +G++ ++ +  +LI +YSK G L+ A  +FD +  
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336

Query: 356 KDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           KDVV+WNS+I     H     AL  FE+M   G  P  +TF+ +LSAC H G V+ G   
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           F +M +KYGI P++EHY CMVNL GRAG ++EAY + V+ M   A PV+WG LL  C LH
Sbjct: 397 FRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGL-VKNMTIAADPVLWGTLLGCCRLH 455

Query: 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            N+ +GE  A+ L + +  N   + LL  +Y   G  + V ++  ++ + G+E
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIE 508


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 252/449 (56%), Gaps = 13/449 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ + T T AS+L  C Q   V +G+ +H  +  + L  +  +S+ L+ +Y+ FG + +A
Sbjct: 217 GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFDQM  R   +  WNS+I+ Y +  +   A+  +  M+  G+ PD  T   +    +
Sbjct: 277 QMVFDQMEVRDLVS--WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 206 GLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            L   R+   +    +R  +   D  + NALV+MYAK G +  A TVFD++  KD IS+N
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWN 394

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQVHGWVL 319
           +++TGY  +GL  EA D +  M+    D  P     V+I    ++   L+ G ++H  ++
Sbjct: 395 TLVTGYTQNGLASEAIDAY-NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  D+ +A  LI +Y K G+L+ A  LF  +P+   V WN+II +   H +  EAL 
Sbjct: 454 KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQ 513

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F+ M  + V  DH+TFVSLLSAC+H G V  G++ F +M ++YGI P ++HY CMV+L 
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLL 573

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +++AY + V  M  +    +WGALL AC ++GN  +G  A+ +L E++ +N   +
Sbjct: 574 GRAGYLEKAYEL-VRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYY 632

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  IY N  + + V +V  +  DRGL 
Sbjct: 633 VLLSNIYANTEKWEGVIKVRSLARDRGLR 661



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 227/402 (56%), Gaps = 25/402 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  L     G K+H  +       +  +++ L+ LY+ +G++D AH+VF  M
Sbjct: 126 TFPPILKACVSLV---DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM 182

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  WN++ISG+ + G    A+ +  +M+ EGV+ D  T   +L  CA    +  
Sbjct: 183 PVKDVGS--WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVIN 240

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +HL  ++ G   D FV NAL++MY+K G +  A+ VFD++  +DL+S+NS++  Y  
Sbjct: 241 GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQ 300

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEW---D 326
           +     A   F+GM L G  PD    V+++SI +  S  RI   + G+V+RR  EW   D
Sbjct: 301 NNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR--EWLDKD 358

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME- 382
           + I N+L+ +Y+K G ++ A  +FD +P+KD +SWN+++  ++++    EA+  +  ME 
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418

Query: 383 -RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            RD  +P+  T+VS++ A +H+G+++ G ++ + ++ K  +   V    C+++LYG+ G 
Sbjct: 419 CRD-TIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI-KNSLYLDVFVATCLIDLYGKCGR 476

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           +++A S+  E     + P  W A++ +  +HG    GE A Q
Sbjct: 477 LEDAMSLFYEIPRDTSVP--WNAIIASLGIHGR---GEEALQ 513



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 226/448 (50%), Gaps = 32/448 (7%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F +L  +C  + A +   KLH L+      +N  +S+KL+ LY T G I  +   FD + 
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 154 NRTAFAFPWNSLISGYAELGEYEDA---IALYFQMEEEG-VEPDQFTFPRVLKACAGLGL 209
            +  F+  WNS+IS Y   G+Y +A   +   F M   G + PD +TFP +LKAC  L  
Sbjct: 82  KKNIFS--WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL-- 137

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
              G+KVH    + GF  D FV  +LV +Y++ G +  A  VF  +  KD+ S+N+M++G
Sbjct: 138 -VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           +  +G    A  +   M   G   D + ++SIL   A +  +  G  +H  VL+ G++ D
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMER 383
           + ++N+LI +YSK G+L  A  +FD M  +D+VSWNSII A+ ++++   AL +F+ M+ 
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD LT VSL S  + L   ++   +   ++ +  +   V     +VN+Y + G ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 444 EAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPD---NEHNF 496
            A+++      F+  P    + W  L+   Y    +      A  + E   D   N+  +
Sbjct: 377 CAHTV------FDQLPRKDTISWNTLVTG-YTQNGLASEAIDAYNMMEECRDTIPNQGTW 429

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
             +I  Y + G L    ++   L+   L
Sbjct: 430 VSIIPAYSHVGALQQGMKIHAKLIKNSL 457


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 262/492 (53%), Gaps = 30/492 (6%)

Query: 40  RNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLE 99
           R  +   SS P S P  L    K+     L  L + +  L  ++++G      T  +LL 
Sbjct: 39  RASVAPRSSVPASLPAAL----KSCAGLGLCTLAASLHAL--AIRSGSFADRFTANALLN 92

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
            C +L    H         TN      G+ S            +   +VFD+M  R A +
Sbjct: 93  LCIKLPGFHHPFG------TNGPSGEGGLES---------AAYESMRKVFDEMLERDAVS 137

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WN+LI G AE   +++A+++  +M  +G  PD FT   VL   A    I+ G  VH  
Sbjct: 138 --WNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGY 195

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++ GF  D FV ++L+DMYA C  +  +  VFD   + D + +NSML GY  +G + EA
Sbjct: 196 AIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEA 255

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             IFR M+  G  P PV  SS++    N SLLR+G Q+H +++R     ++ I++SLI +
Sbjct: 256 LGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDM 315

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y K G +D A  +F+ +   D+VSW ++I     H    EA + FE+ME   V P+H+TF
Sbjct: 316 YCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITF 375

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +++L+AC+H G V  G + F+ M  +YG  P +EH A + +  GRAG +DEAY+ I E M
Sbjct: 376 LAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISE-M 434

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
           + + +  VW  LL AC +H N  + E  A+K+FELEP +  +  +L  +Y  +GR ++  
Sbjct: 435 KIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAA 494

Query: 514 RVERMLVDRGLE 525
           ++ + +  +G++
Sbjct: 495 QLRKSMRIKGMK 506


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 251/452 (55%), Gaps = 11/452 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +QN ++  + T   +L    Q+ ++ HG ++H          +  + + +L +Y     I
Sbjct: 212 MQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCI 271

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---EEEGVEPDQFTFPR 199
           D A ++FD M         W++++  Y       +A+ L+ Q+   +++ +     T   
Sbjct: 272 DYARRIFDMM-GIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLAT 330

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           V++ CA L  +  G  +H  A++ GF  D  V N L+ MYAKCG I  A   F+ +  +D
Sbjct: 331 VIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRD 390

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
            +S+ ++++GY+ +G   E   +F  M L+G +P+   ++S+L   A+ + L  G+  H 
Sbjct: 391 AVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHC 450

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           + +  G   D  I N+LI +Y+K GK+D A  +FD M ++ +VSWN++I A   H    E
Sbjct: 451 YAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLE 510

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL+ F+ M+ +G+ PD +TF+ L+SAC+H G V  G+  F+ M + +GI PR+EHYACMV
Sbjct: 511 ALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMV 570

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L  RAGL  E +S I EKM  E    VWGALL AC ++ NV +GE  ++K+ +L P++ 
Sbjct: 571 DLLSRAGLFKEVHSFI-EKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPEST 629

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            NF LL  +Y   GR DD  +V     ++G E
Sbjct: 630 GNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFE 661



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 209/403 (51%), Gaps = 25/403 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GIT    TF  +L+ C  LK    G ++H  I    L  N  +S+ L+  YA  G +D+A
Sbjct: 114 GITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDA 173

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
            +VFD+M  R   A  WNS+ISG++   G Y++   L  QM+ + V P+  T   VL A 
Sbjct: 174 KEVFDKMHKRDVVA--WNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAV 230

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISY 263
           A +  +R G+++H   VR GF  D  V   ++D+Y KC  I  AR +FD +G  K+ +++
Sbjct: 231 AQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTW 290

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS--------ILANASLLRIGAQVH 315
           ++M+  Y+    + EA ++F  +++     D + +S+        + AN + L  G  +H
Sbjct: 291 SAMVGAYVVCDFMREALELFCQLLM--LKDDVIVLSAVTLATVIRVCANLTDLSTGTCLH 348

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
            + ++ G   DL + N+L+ +Y+K G ++ A   F+ M  +D VS+ +II  + ++    
Sbjct: 349 CYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSE 408

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG--ERLFSVMVEKYGISPRVEHYA 430
           E L  F +M+  G+ P+  T  S+L ACAHL  +  G     ++++    G +       
Sbjct: 409 EGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIIC---GFTADTMICN 465

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++++Y + G ID A   + ++M  +   V W  ++ A  +HG
Sbjct: 466 ALIDMYAKCGKIDTARK-VFDRMH-KRGIVSWNTMIIAYGIHG 506



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 196/373 (52%), Gaps = 22/373 (5%)

Query: 92  ETFASLLETCYQLKAV-------EHGIK-LHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           E    LLE+C Q K++       +H +K LHR   TNL   +     KL+ LY     + 
Sbjct: 10  EYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFE-KLVDLYIACSELK 68

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  VFD+M +R      WN LI  YA  G YE+AI LY++M   G+ P++FTFP VLKA
Sbjct: 69  IARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKA 128

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ L     G ++H D  R     + +V  ALVD YAKCG +  A+ VFD++  +D++++
Sbjct: 129 CSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAW 188

Query: 264 NSMLTGY-IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           NSM++G+ +H G   E   +   M  N   P+   I  +L   A  + LR G ++HG+ +
Sbjct: 189 NSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCV 247

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKD---HEAL 375
           RRG   D+ +   ++ VY K   +D A  +FD M   K+ V+W++++ A+       EAL
Sbjct: 248 RRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREAL 307

Query: 376 IYFEQ---MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
             F Q   ++ D ++   +T  +++  CA+L  +  G  L    + K G    +     +
Sbjct: 308 ELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAI-KSGFVLDLMVGNTL 366

Query: 433 VNLYGRAGLIDEA 445
           +++Y + G+I+ A
Sbjct: 367 LSMYAKCGIINGA 379


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 258/469 (55%), Gaps = 40/469 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F  +L+   ++ A+  G++LH +        +  + +  + +YA+ G I+ A  VFD+M
Sbjct: 113 SFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEM 172

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+R      WN++I  Y   G  ++A  L+ +M++  V PD+     ++ AC   G +R 
Sbjct: 173 SHRDVVT--WNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 230

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYA-------------------------------K 241
              ++   +      D  +L ALV MYA                               K
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG +  A+ +FD+   KDL+ + +M++ Y+      EA  +F  M  +G  PD V++ S+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           +   AN  +L     VH  +   G+E +L I N+LI +Y+K G LD    +F+ MP+++V
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410

Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSW+S+I+A   H +  +AL  F +M+++ V P+ +TFV +L  C+H G V+ G+++F+ 
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 470

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M ++Y I+P++EHY CMV+L+GRA L+ EA   ++E M   ++ V+WG+L+ AC +HG +
Sbjct: 471 MTDEYNITPKLEHYGCMVDLFGRANLLREALE-VIESMPVASNVVIWGSLMSACRIHGEL 529

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +G+ AA+++ ELEPD++    L+  IY    R +DV  + R++ ++ +
Sbjct: 530 ELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 168/349 (48%), Gaps = 40/349 (11%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           +N  +   +   E    I  Y ++   G   DQF+F  +LKA + +  +  G ++H  A 
Sbjct: 79  FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAF 138

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +     D FV    +DMYA CG I  AR VFD + ++D++++N+M+  Y   GL+ EAF 
Sbjct: 139 KIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFK 198

Query: 282 IFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWD------------ 326
           +F  M  +   PD + + +I++       +R    ++ +++   V  D            
Sbjct: 199 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYA 258

Query: 327 -------------------LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
                              L ++ +++  YSK G+LD A  +FD   +KD+V W ++I A
Sbjct: 259 GAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISA 318

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           + +     EAL  FE+M   G+ PD ++  S++SACA+LG +   + + S  +   G+  
Sbjct: 319 YVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSC-IHVNGLES 377

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            +     ++N+Y + G +D A   + EKM    + V W +++ A  +HG
Sbjct: 378 ELSINNALINMYAKCGGLD-ATRDVFEKMP-RRNVVSWSSMINALSMHG 424



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            E    +GI     +  S++  C  L  ++    +H  I  N L     I++ L+ +YA 
Sbjct: 332 FEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAK 391

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D    VF++M  R   +  W+S+I+  +  GE  DA++L+ +M++E VEP++ TF 
Sbjct: 392 CGGLDATRDVFEKMPRRNVVS--WSSMINALSMHGEASDALSLFARMKQENVEPNEVTFV 449

Query: 199 RVLKACAGLGLIRVGEKV 216
            VL  C+  GL+  G+K+
Sbjct: 450 GVLYGCSHSGLVEEGKKI 467


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 250/437 (57%), Gaps = 9/437 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + S+L        V +G ++H L   N L     + + L+ +Y   G +D+A + F+   
Sbjct: 217 YTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSG 276

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           ++      W+++I+GYA+ G+  +A+ L++ M   G +P +FTF  V+ AC+ +G +  G
Sbjct: 277 DKDDIT--WSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEG 334

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H  +++ G+    + + ALVDMYAKCG +V AR  FD +   D++ + SM++GY  +
Sbjct: 335 KQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQN 394

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIA 330
           G    A  ++  M +    P  + ++S+L A +SL  L  G Q+H   ++ G   ++ I 
Sbjct: 395 GENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIG 454

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVL 387
           ++L  +Y+K G L+    +F  MP +D+++WN++I   S++ E   AL  FE++      
Sbjct: 455 SALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTK 514

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PD++TFV++LSAC+H+G V+ G+  F +M++++GI PRVEHYACMV++  RAG + E   
Sbjct: 515 PDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKE 574

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
            I E    +    +W  LL AC  + N  +G  A +KL EL       + LL  IY   G
Sbjct: 575 FI-ESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALG 633

Query: 508 RLDDVERVERMLVDRGL 524
           R DDVERV R++  RG+
Sbjct: 634 RSDDVERVRRLMKLRGV 650



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 200/393 (50%), Gaps = 16/393 (4%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E+++ NG      TF+ +            G++ H L        +  + S L+ +Y   
Sbjct: 107 ENTLPNG-----HTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKI 161

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G + +A +VFD +  R   +  W ++ISGYA      +A  L+  M  E    D+F +  
Sbjct: 162 GCMLDARKVFDTIPERNTVS--WATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTS 219

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL A     L+  G+++H  A++ G      V NALV MY KCG +  A   F+  G+KD
Sbjct: 220 VLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKD 279

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHG 316
            I++++M+TGY   G   EA ++F  M LNG  P     V + +  ++   L  G Q+HG
Sbjct: 280 DITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHG 339

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE--- 373
           + L+ G E  +    +L+ +Y+K G L  A   FD++ + D+V W S+I  ++++ E   
Sbjct: 340 YSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENET 399

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  + +M+ + ++P  LT  S+L AC+ L +++ G+++ +  + KYG S  V   + + 
Sbjct: 400 ALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTI-KYGFSLEVPIGSALS 458

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +Y + G +++  +++  +M      + W A++
Sbjct: 459 TMYAKCGSLEDG-NLVFRRMP-SRDIMTWNAMI 489



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 190/364 (52%), Gaps = 11/364 (3%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           Q  +F  LL  C + K ++ G  +H  +       +  +++ L+ LYA  G I +A  VF
Sbjct: 9   QHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVF 68

Query: 150 DQMSNRTAFAFPWNSLISGYAELGE--YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           + ++N+   +  WN LI+GY++ G   Y   + L+ +M  E   P+  TF  V  A +  
Sbjct: 69  ESITNKDVVS--WNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSS 126

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
                G + H  A++    +D FV ++L++MY K G ++ AR VFD I  ++ +S+ +++
Sbjct: 127 PETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATII 186

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           +GY    +  EA+++F  M       D    +S+L+  +   L+  G Q+H   L+ G+ 
Sbjct: 187 SGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLL 246

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQM 381
               + N+L+ +Y K G LD A   F+    KD ++W+++I  +++    HEAL  F  M
Sbjct: 247 SIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNM 306

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
             +G  P   TFV +++AC+ +G+++ G+++    + K G   ++     +V++Y + G 
Sbjct: 307 HLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSL-KAGYECQIYFMTALVDMYAKCGS 365

Query: 442 IDEA 445
           + +A
Sbjct: 366 LVDA 369



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P   +F  +L  C     ++ G+ +H   +R G     ++ N+LV++YAKCG IVKA+ V
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAF--DIFRGMILNGFDPDPVAISSILANASL-- 307
           F+ I NKD++S+N ++ GY   G +  +F  ++F+ M      P+    S +   AS   
Sbjct: 68  FESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSP 127

Query: 308 -LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
               G Q H   ++    +D+ + +SLI +Y K G +  A  +FD +P+++ VSW +II 
Sbjct: 128 ETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIIS 187

Query: 367 AHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            ++ +    EA   F  M R+    D   + S+LSA      V  G+++  + + K G+ 
Sbjct: 188 GYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLAL-KNGLL 246

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
                   +V +YG+ G +D+A      ++  +   + W A++
Sbjct: 247 SIASVGNALVTMYGKCGCLDDALKTF--ELSGDKDDITWSAMI 287


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 261/468 (55%), Gaps = 10/468 (2%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQT-ETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRK 124
           +K   LD  +  +E+S  +   + T E +  LL  C   K++ HGIK+  LI  N  LR 
Sbjct: 113 SKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRH 172

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYF 183
           N  + SKL+ L++    +D A ++FD +++ +      W ++  GY+  G   DA+ +Y 
Sbjct: 173 NPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYV 232

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M    +EP  F+    LKAC  L  +RVG  +H   V+     D  V N L+ +Y + G
Sbjct: 233 DMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESG 292

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
               AR VFD +  ++++++NS+++       + E F++FR M           +++IL 
Sbjct: 293 LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 352

Query: 304 NAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             S    L  G ++H  +L+   + D+ + NSL+ +Y K G+++ +  +FD M  KD+ S
Sbjct: 353 ACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS 412

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WN +++ ++ +    E +  FE M   GV PD +TFV+LLS C+  G  + G  LF  M 
Sbjct: 413 WNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMK 472

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
            ++ +SP +EHYAC+V++ GRAG I EA   ++E M F+ S  +WG+LL +C LHGNV +
Sbjct: 473 TEFRVSPALEHYACLVDILGRAGKIKEAVK-VIETMPFKPSASIWGSLLNSCRLHGNVSV 531

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           GE AA++LF LEP N  N+ ++  IY +A   D+V+++  M+  RG++
Sbjct: 532 GEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVK 579


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 257/453 (56%), Gaps = 14/453 (3%)

Query: 82  SVQNGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           ++ NG+  + + T  SLL  C +      G+ +H     + L     +S+KL+ LYA FG
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPR 199
            + +  +VFD+M  R   +  WNS+I  Y EL E    AI+L+ +M    ++PD  T   
Sbjct: 297 RLRDCQKVFDRMYVRDLIS--WNSIIKAY-ELNEQPLRAISLFQEMRLSRIQPDCLTLIS 353

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNK 258
           +    + LG IR    V    +R G+  +   + NA+V MYAK G +  AR VF+ + N 
Sbjct: 354 LASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNT 413

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNG----FDPDPVAISSILANASLLRIGAQV 314
           D+IS+N++++GY  +G   EA +++  M   G         V++    + A  LR G ++
Sbjct: 414 DVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKL 473

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KD 371
           HG +L+ G+  D+ +  SL  +Y K G+L+ A  LF  +P+ + V WN++I  H      
Sbjct: 474 HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHG 533

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            +A++ F++M  +GV PDH+TFV+LLSAC+H G V  G+  F +M   YGI+P ++HY C
Sbjct: 534 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC 593

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV++YGRAG ++ A   I + M  +    +WGALL AC +HGNV +G+ A++ LFE+EP+
Sbjct: 594 MVDMYGRAGQLETALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPE 652

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +     LL  +Y +AG+ + V+ +  +   +GL
Sbjct: 653 HVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 243/522 (46%), Gaps = 71/522 (13%)

Query: 42  RITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSV-------QNGI-TVQTET 93
           +  TFS  P+  PT        F +  LQ++ S+I++  +S        +NG  + + + 
Sbjct: 2   KFGTFS-LPRQIPT---CKGGRFTRV-LQSIGSVIREFSASANALQDCWKNGNESKEIDD 56

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
             +L   C  L++ +    LH  +  +   +N  IS+KL+ LY   G +  A   FD + 
Sbjct: 57  VHTLFRYCTNLQSAK---CLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQ 113

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           NR  +A  WN +ISGY   G   + I  +   M   G+ PD  TFP VLKAC     +  
Sbjct: 114 NRDVYA--WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVID 168

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G K+H  A++FGF +D +V  +L+ +Y++   +  AR +FD +  +D+ S+N+M++GY  
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228

Query: 273 HGLLVEAFDIFRGMILNGFDP-DPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
            G   EA  +  G  L   D    V++ S    A     G  +H + ++ G+E +L ++N
Sbjct: 229 SGNAKEALTLSNG--LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLP 388
            LI +Y++ G+L     +FD M  +D++SWNSII A+  + +   A+  F++M    + P
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--- 445
           D LT +SL S  + LG ++    +    + K      +     +V +Y + GL+D A   
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 406

Query: 446 -------------------------------YSMIVEKMEFEASPVVWGALLYACYLHGN 474
                                          Y+++ E+ E  A+   W ++L AC   G 
Sbjct: 407 FNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466

Query: 475 VCMGETAAQKLFELEPDNEHNFELLI-----KIYGNAGRLDD 511
           +  G     +L +    N    ++ +      +YG  GRL+D
Sbjct: 467 LRQGMKLHGRLLK----NGLYLDVFVVTSLADMYGKCGRLED 504


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 255/476 (53%), Gaps = 47/476 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F S L  C +LK ++ G ++H LI  +    +  + S L+  Y+  GL+  A +VFD M
Sbjct: 158 SFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGM 217

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  WN LI+ Y + G   +A+  + +M E G +PD+ T   V+ ACA L   + 
Sbjct: 218 EEKNVVS--WNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKE 275

Query: 213 GEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDR----------------- 254
           G ++H   V+   F  D  + NALVDMYAKCG + +AR VFDR                 
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYA 335

Query: 255 --------------IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
                         I  KD++S+N+++ GY  +G   EA  +FR +      P      +
Sbjct: 336 KSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGN 395

Query: 301 IL---ANASLLRIGAQVHGWVLRRGV------EWDLCIANSLIVVYSKDGKLDQACWLFD 351
           +L   AN + L +G Q H  V++ G       E D+ + NSLI +Y K G +++   +F+
Sbjct: 396 LLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFE 455

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
           +M +KD VSWN++I  ++++    EAL  F++M   G  PDH+T +  L AC+H G V+ 
Sbjct: 456 NMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEE 515

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G R F  M +++G+ P  +HY CMV+L GRAG ++EA  +I E M  +   VVW +LL A
Sbjct: 516 GRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLI-ESMPKQPDAVVWSSLLSA 574

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C +H N+ +G+  A+K+FE++P +   + LL  +Y   GR  D   V +++  RG+
Sbjct: 575 CKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGV 630



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 225/449 (50%), Gaps = 76/449 (16%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           +  FA LL+ C +L++      +H RLI T    +   I ++L+ +Y   G +D A +VF
Sbjct: 24  SSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFC-EEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 150 DQMSNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIA 180
           D+MS R  F+F                              WNS+I+G+A+   +E+A+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
            + +M  +    + ++F   L AC+ L  +++G ++H    +  +  D F+ + L+D Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG +  AR VFD +  K+++S+N ++T Y  +G  +EA + F  M   GF PD V ++S
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 301 ILANASLL---RIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-- 354
           +++  + L   + G Q+H  V++      DL + N+L+ +Y+K G++++A  +FD MP  
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 355 -----------------------------QKDVVSWNSIIHAHSK---DHEALIYFEQME 382
                                        QKD+VSWN++I  +++   + EAL  F  ++
Sbjct: 323 NAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLK 382

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-----KYGISPRVEHYACMVNLYG 437
           R+ V P H TF +LL+A A+L  +++G +  S +V+     + G  P +     ++++Y 
Sbjct: 383 RESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYM 442

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           + G ++E    + E M  E   V W  ++
Sbjct: 443 KCGSVEEGLR-VFENM-VEKDHVSWNTMI 469



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 37/290 (12%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D   F ++L  C  L   R    VH   ++  F  + F+ N L+D+Y KCG +  AR VF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 253 DRIG-------------------------------NKDLISYNSMLTGYIHHGLLVEAFD 281
           DR+                                 KD  S+NSM+ G+  H    EA D
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 282 IFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
            F  M  + F  +  +  S L+  S    L++GAQ+HG + +     D+ + + LI  YS
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVS 395
           K G +  A  +FD M +K+VVSWN +I  + ++    EAL  F +M   G  PD +T  S
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           ++SACA L + K G ++ + +V+       +     +V++Y + G ++EA
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEA 312



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 38/196 (19%)

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           R    VHG +++     ++ I N LI VY K G LD A  +FD M +++V S+NSII   
Sbjct: 41  RDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTL 100

Query: 368 ---------------------------------HSKDHEALIYFEQMERDGVLPDHLTFV 394
                                            H +  EAL +F +M RD  + +  +F 
Sbjct: 101 MRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFG 160

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           S LSAC+ L  +K+G ++   ++ K   S  V   + +++ Y + GL+  A   + + ME
Sbjct: 161 SGLSACSRLKDLKLGAQIHG-LISKSKYSLDVFMGSGLIDFYSKCGLVGCA-RRVFDGME 218

Query: 455 FEASPVVWGALLYACY 470
            E + V W  L+  CY
Sbjct: 219 -EKNVVSWNCLI-TCY 232


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 261/468 (55%), Gaps = 10/468 (2%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQT-ETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRK 124
           +K   LD  +  +E+S  +   + T E +  LL  C   K++ HGIK+  LI  N  LR 
Sbjct: 106 SKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRH 165

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYF 183
           N  + SKL+ L++    +D A ++FD +++ +      W ++  GY+  G   DA+ +Y 
Sbjct: 166 NPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYV 225

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M    +EP  F+    LKAC  L  +RVG  +H   V+     D  V N L+ +Y + G
Sbjct: 226 DMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESG 285

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
               AR VFD +  ++++++NS+++       + E F++FR M           +++IL 
Sbjct: 286 LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 345

Query: 304 NAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             S    L  G ++H  +L+   + D+ + NSL+ +Y K G+++ +  +FD M  KD+ S
Sbjct: 346 ACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS 405

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WN +++ ++ +    E +  FE M   GV PD +TFV+LLS C+  G  + G  LF  M 
Sbjct: 406 WNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMK 465

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
            ++ +SP +EHYAC+V++ GRAG I EA   ++E M F+ S  +WG+LL +C LHGNV +
Sbjct: 466 TEFRVSPALEHYACLVDILGRAGKIKEAVK-VIETMPFKPSASIWGSLLNSCRLHGNVSV 524

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           GE AA++LF LEP N  N+ ++  IY +A   D+V+++  M+  RG++
Sbjct: 525 GEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVK 572


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 169/480 (35%), Positives = 260/480 (54%), Gaps = 40/480 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G++    T   +L+ C    A    + +H L     +     + + L+ +Y   GLI
Sbjct: 80  ICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLI 139

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++FD ++++T  +  WNS+I GYA +G +++A  L+ +M E G+EPD FTF  +L 
Sbjct: 140 HCARKLFDDITDKTLVS--WNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLS 197

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C+    + +G  VH      G   D  V NALVDMYAKCG++  A+ +FDR   K+++S
Sbjct: 198 VCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVS 257

Query: 263 YNSMLTGYIHHGLL-------------------------------VEAFDIFRGMILNGF 291
           + SM++ Y  HG +                                EA D+F  M  +  
Sbjct: 258 WTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRV 317

Query: 292 DPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   + SILA  S L    +G ++H ++L     + + + NSLI +Y+K G +  A  
Sbjct: 318 VPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALD 377

Query: 349 LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F  MP K++VSWN II A   H    EA+  FE+M+ DG LPD +T   LLSAC+H G 
Sbjct: 378 IFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGL 437

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           V +G   F  M   Y +   +EHYACMV+L GR GL+ EA  +I  +M  +   VVWGAL
Sbjct: 438 VDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELI-GRMPMKPDVVVWGAL 496

Query: 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L AC +HGNV +G+   ++L ELEP +   + L+  IY  A R +DV+++ ++++DRG++
Sbjct: 497 LGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIK 556



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 198/385 (51%), Gaps = 46/385 (11%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A ++FDQ+     F +  NSLI GY+   +  DA+ L+ +M   G+ P++FT P 
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMY--NSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VLKAC           VH  A++ G G   FV NAL+ +Y  CG I  AR +FD I +K 
Sbjct: 94  VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 153

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHG 316
           L+S+NSM+ GY H G   EAF +FR M   G +PD    V + S+ + +  L +G  VH 
Sbjct: 154 LVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHF 213

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQA-------------CW--------------- 348
            +   GV+ D+ + N+L+ +Y+K G L  A              W               
Sbjct: 214 CIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEV 273

Query: 349 ---LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
              +FD MP K+VVSWNS+I  + ++    EAL  F +M    V+PD  T VS+L+AC+ 
Sbjct: 274 ARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQ 333

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
           LG + +G+++ + ++   G +  V  Y  ++++Y + G +  A  + +E      + V W
Sbjct: 334 LGDLVMGKKIHNYILSNKG-AYGVTLYNSLIDMYAKCGPVVTALDIFLEMP--GKNLVSW 390

Query: 463 GALLYACYLHGNVCMGETAAQKLFE 487
             ++ A  LHG  C  E  A KLFE
Sbjct: 391 NVIIGALALHG--CGLE--AIKLFE 411



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 78  DLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
           DL + ++N   V  E T  S+L  C QL  +  G K+H  I +N       + + L+ +Y
Sbjct: 307 DLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMY 366

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G +  A  +F +M  +   +  WN +I   A  G   +AI L+ +M+ +G  PD+ T
Sbjct: 367 AKCGPVVTALDIFLEMPGKNLVS--WNVIIGALALHGCGLEAIKLFEEMQADGTLPDEIT 424

Query: 197 FPRVLKACAGLGLIRVG 213
              +L AC+  GL+ +G
Sbjct: 425 LTGLLSACSHSGLVDMG 441


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 251/446 (56%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  ++ +C  L A+  G ++H  I  +    +  + S L+ +Y+  G     
Sbjct: 123 GLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGM 182

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF +M  R   +  W ++I+GY +   +++ + ++ +M   G +P+  T   VL ACA
Sbjct: 183 ELVFGEMVVRNIVS--WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACA 240

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL  + +G+ +H   ++ G   D  + NAL+ +Y KCG++  AR++FD +  ++L+S+N+
Sbjct: 241 GLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNA 300

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
           M+  Y  +     A  +FR M     D D + + S++ A ASL  L  G  +H  V R+G
Sbjct: 301 MIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKG 360

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +E ++ I N+LI +Y+K G +D A  +F+ +P + VVSW S+I A   H    +AL  F 
Sbjct: 361 LEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFS 420

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+ +GV P+  TF ++ +AC H G V+ G + F  M+  Y I P VEH ACMV+L GRA
Sbjct: 421 RMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRA 480

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EAY  I +KM  E    VWGALL +C +H N+ + E  A+KLF L+P     + L+
Sbjct: 481 GSLMEAYEFI-DKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLM 539

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY  AGR +D  R+ +++ +R L+
Sbjct: 540 SNIYAEAGRWEDAARLRKLMEERELK 565



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 235/409 (57%), Gaps = 19/409 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG-LIDEAHQV 148
            + +F  LL  C  L  +    ++H L+ TN   +N  +S+KL+         +D A ++
Sbjct: 28  HSRSFNYLLNCCSSLPDLS---RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKM 84

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FDQM  R  F   WN+LI GYA+ G  E+A+ALY  M   G+ PD +TFP V+++CA L 
Sbjct: 85  FDQMPKRDVFL--WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLS 142

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R G++VH + V+ GF  D FV ++LV MY++ G+ +    VF  +  ++++S+ +++ 
Sbjct: 143 ALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIA 202

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           GY+ +    E   +FR M+ +G  P+ V + S+L   A    L +G  +HG+ ++ GV+ 
Sbjct: 203 GYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP 262

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQME 382
           D+ + N+LI +Y K G ++ A  LFD M  +++VSWN++I A+ +++    A+  F +M+
Sbjct: 263 DVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQ 322

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            + V  D++T VS++SACA LG++  G R    +V++ G+   V     ++++Y + G I
Sbjct: 323 AEKVDFDYITMVSVISACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYAKCGNI 381

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           D A   + E++    S V W +++ AC  HG+   GE A  KLF    D
Sbjct: 382 DLARE-VFERLPCR-SVVSWTSMIGACASHGH---GEDAL-KLFSRMKD 424



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 163/349 (46%), Gaps = 19/349 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V +G      T  S+L  C  L+ +  G  +H       +  +  +++ L+ LY   G +
Sbjct: 221 VGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNV 280

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +FD M  +   +  WN++I+ Y +     +A+ L+ +M+ E V+ D  T   V+ 
Sbjct: 281 ETARSLFDGMVVQNLVS--WNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVIS 338

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +  G  +H    R G   +  + NAL+DMYAKCG+I  AR VF+R+  + ++S
Sbjct: 339 ACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS 398

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIG-----AQV 314
           + SM+     HG   +A  +F  M   G  P+    +++     ++ L+  G     + +
Sbjct: 399 WTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMM 458

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHE 373
             + +  GVE   C+ + L     + G L +A    D MP + DV  W +++    + H 
Sbjct: 459 RDYSIMPGVEHCACMVDLL----GRAGSLMEAYEFIDKMPVEPDVSVWGALL-GSCRIHS 513

Query: 374 ALIYFEQMERDGVL--PDHLTFVSLLSAC-AHLGSVKVGERLFSVMVEK 419
            L   E +     L  P  +TF  L+S   A  G  +   RL  +M E+
Sbjct: 514 NLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEER 562


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 263/484 (54%), Gaps = 47/484 (9%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G  V   +F S L  C  L+ ++ G ++H L+  +    +  + S L+ +Y+  G ++ 
Sbjct: 145 HGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEY 204

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VFD+M+ R+  +  WNSLI+ Y + G  ++A+ ++ +M + GVEPD+ T   V+ AC
Sbjct: 205 AQSVFDEMTVRSRVS--WNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSAC 262

Query: 205 AGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFD---------- 253
           A +  I+ G+++H   V+   F  D  + NAL+DMYAKC  I +AR +FD          
Sbjct: 263 ATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSE 322

Query: 254 ---------------------RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
                                 +  KD+I++N+++ G   +G   EA  +FR +      
Sbjct: 323 TSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVW 382

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW------DLCIANSLIVVYSKDGKL 343
           P      ++L   AN + L++G Q H  VL+ G  +      D+ + NSLI +Y K G +
Sbjct: 383 PTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSV 442

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSAC 400
           +  C +F HM +KD VSWN++I  ++++   ++AL  F +M   G  PDH+T + +L AC
Sbjct: 443 ENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCAC 502

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G +  G   F  M  ++G+ P  +HY CMV+L GRAG ++EA ++I E+M  +   +
Sbjct: 503 SHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLI-EEMSMQPDAI 561

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           VWG+LL AC +H N+ +GE   +KL E++P+N   + LL  +Y       +V RV +++ 
Sbjct: 562 VWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMR 621

Query: 521 DRGL 524
            RG+
Sbjct: 622 QRGV 625



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 225/450 (50%), Gaps = 74/450 (16%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +  F+ LL  C + ++     ++H  I  +       I ++L+ +Y   G +D A ++
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 149 FDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYEDAI 179
           FD+M  R  F++                              WNS+ISG+ + G +++A+
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
             + QM   G   ++++F   L ACAGL  +++G ++H    R  +  D ++ +ALVDMY
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMY 196

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           +KCG +  A++VFD +  +  +S+NS++T Y  +G + EA  IF  MI  G +PD V ++
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256

Query: 300 SIL---ANASLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP- 354
           S++   A  S ++ G Q+H  V++      DL + N+L+ +Y+K  ++++A  +FD MP 
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316

Query: 355 ------------------------------QKDVVSWNSIIHA---HSKDHEALIYFEQM 381
                                          KDV++WN++I     + ++ EALI F  +
Sbjct: 317 RSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLL 376

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-----KYGISPRVEHYACMVNLY 436
           +R+ V P H TF +LL+ACA+L  +++G +  S +++     +YG    V     ++++Y
Sbjct: 377 KRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMY 436

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            + G ++    +    +E +   V W A++
Sbjct: 437 MKCGSVENGCRVFQHMLEKDC--VSWNAMI 464



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 38/196 (19%)

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           R  ++VH  +++     +  I N LI VY K G +D A  LFD M ++++ SWNSII A 
Sbjct: 36  RDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAF 95

Query: 368 ---------------------------------HSKDHEALIYFEQMERDGVLPDHLTFV 394
                                            H +  EAL+YF QM   G L +  +F 
Sbjct: 96  TKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFG 155

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           S LSACA L  +K+G ++ S++     +S  V   + +V++Y + G ++ A S + ++M 
Sbjct: 156 SALSACAGLQDLKLGSQIHSLVYRSNYLSD-VYMGSALVDMYSKCGRVEYAQS-VFDEMT 213

Query: 455 FEASPVVWGALLYACY 470
              S V W +L+  CY
Sbjct: 214 VR-SRVSWNSLI-TCY 227


>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 502

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 249/442 (56%), Gaps = 10/442 (2%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            T  F+ +L +C Q  A+    + H  I  +    +  + + LL +Y   G + +A  VF
Sbjct: 6   STSRFSFVLRSCAQSYAIAQAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVF 65

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+M++R   +  WN LI+ Y     Y DA+ ++ +    G  PD +T P++ KA  G+G 
Sbjct: 66  DKMAHRNMHS--WNILIASYVHNSFYFDALNVFNEFRHLGFLPDHYTLPQMFKASVGIGD 123

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
             +G+++H   ++ GF     V + ++D YAKCG +  AR VFD +  KD +S+NSM++G
Sbjct: 124 AYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISG 183

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV-EW 325
           Y   G+ ++A D F+ M+L G + D + I S+L        LR G ++H  VL+  V   
Sbjct: 184 YGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAA 243

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQME 382
           D+ + NSLI +YSK G L  +  +F +M + ++V+W ++I    AH K  ++L+ F +M+
Sbjct: 244 DVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMK 303

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ P+ +T  ++L++C+H G +  G R+F  ++    + P VEHYAC V+L  R G +
Sbjct: 304 DCGIQPNSVTLTAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHYACAVDLLSRFGFL 363

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA+ +++  M+ +A+  +WGALL  C +H N+  GE AA +LF+LEP N  NF  LI I
Sbjct: 364 KEAF-LLIRNMKVKAAASIWGALLSGCMIHRNLEFGEIAANQLFKLEPTNPSNFIALISI 422

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y + G    V      + D GL
Sbjct: 423 YESLGMTHGVSLTREKMRDLGL 444


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 255/439 (58%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L TC  L A+  G ++H  +     + N  + S L+ +YA +G +  A ++  ++
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 +  W ++I+GY +   + +A+ L+ +ME  G++ D   F   + ACAG+  +R 
Sbjct: 525 PEDDVVS--WTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  +   GFG D  + NAL+ +YA+CG I +A   F++IG+K+ IS+NS+++G   
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQ 642

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G   EA  +F  M+    + +     S ++ A+    ++ G Q+H  VL+ G + +  +
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV 702

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
           +NSLI +Y+K G +  A   F+ M +++V+SWN++I  +S+     EAL  FE+M+  G+
Sbjct: 703 SNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI 762

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +P+H+TFV +LSAC+H+G VK G   F  M + + + P+ EHY C+V+L GRAG +D A 
Sbjct: 763 MPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAM 822

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E M   A  ++W  LL AC +H N+ +GE AA  L ELEP++   + L+  IY  +
Sbjct: 823 EYIKE-MPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVS 881

Query: 507 GRLDDVERVERMLVDRGLE 525
            +    +   +++ DRG++
Sbjct: 882 RQWIHRDWSRKLMKDRGVK 900



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 233/464 (50%), Gaps = 25/464 (5%)

Query: 33  QKQQQISRNRI-TTFSSYPKSSPTPLLTN--QKAFPKTKLQALDSIIQDLESSVQNGITV 89
           + ++ IS  RI +T +S    S   L++   Q+ F    L+    + +D        +  
Sbjct: 308 RSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC-------LKP 360

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
              T ASLL  C  + A+  G++LH       +  +  +   LL LY+    ++ AH+ F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
             ++  T     WN ++  Y +L    D+  ++ QM+ EG+ P+QFT+P +L+ C  LG 
Sbjct: 421 --LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           + +GE++H   ++ GF  + +V + L+DMYAK G +  A  +  R+   D++S+ +M+ G
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           Y+ H +  EA  +F  M   G   D +  +S +   A    LR G Q+H      G   D
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
           L I N+LI +Y++ G++ +A   F+ +  K+ +SWNS++   ++     EAL  F +M R
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
                +  T+ S +SA A L ++K G+++ S MV K G     E    +++LY ++G I 
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQIHS-MVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           +A+    +    E + + W A++     HG  C  E  A +LFE
Sbjct: 718 DAWREFNDMS--ERNVISWNAMITGYSQHG--CGME--ALRLFE 755



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 204/382 (53%), Gaps = 15/382 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
             +S+L    +++  E G +LH L+          + + L+ LY+    +  A ++F  M
Sbjct: 263 VLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           ++R   ++  NSLISG  + G  + A+ L+ +M+ + ++PD  T   +L ACA +G +  
Sbjct: 323 NSRDGVSY--NSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++ G   D  +  +L+D+Y+KC D+  A   F     ++++ +N ML  Y  
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQ 440

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
              L ++F+IFR M + G  P+     SIL   +    L +G Q+H  V++ G + ++ +
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            + LI +Y+K G+L  A  +   +P+ DVVSW ++I     H    EAL  FE+ME  G+
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGI 560

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GISPRVEHYACMVNLYGRAGLIDE 444
             D++ F S +SACA + +++ G+++ +   + Y  G    +     +++LY R G I E
Sbjct: 561 QFDNIGFASAISACAGIRALRQGQQIHA---QSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 445 AYSMIVEKMEFEASPVVWGALL 466
           AY +  EK+  + + + W +L+
Sbjct: 618 AY-LAFEKIG-DKNNISWNSLV 637



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 211/420 (50%), Gaps = 15/420 (3%)

Query: 59  TNQKAFPKTKL---QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           TN  +F +T L   Q     IQ +    + G+    + +  LLE C    ++   ++LH 
Sbjct: 23  TNSHSFDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHC 82

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            I  +       +   L+  Y   G    A +VFD+ SNR+ F+  WN +I  +      
Sbjct: 83  RISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFS--WNKMIHVFVAQKSN 140

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNA 234
                L+ +M  EG+ P+ +TF  VLKAC G  +     ++VH     +GF     V N 
Sbjct: 141 FQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANL 200

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+D+Y+K G I  A+ VF+ I  KD++++ +M++G   +GL  EA  +F  M  +   P 
Sbjct: 201 LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPT 260

Query: 295 PVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
           P  +SS+L+ ++   L  +G Q+H  V++ G   +  + N L+ +YS+  KL  A  +F 
Sbjct: 261 PYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS 320

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  +D VS+NS+I           AL  F +M+RD + PD +T  SLLSACA +G++  
Sbjct: 321 TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G +L S  + K G+S  +     +++LY +   ++ A+   +   E E + V+W  +L A
Sbjct: 381 GMQLHSHAI-KAGMSADIILEGSLLDLYSKCADVETAHKFFL-TTETE-NIVLWNVMLVA 437



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 204/388 (52%), Gaps = 12/388 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIK-LHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           GIT    TFA +L+ C       + +K +H          +  +++ L+ LY+  G I+ 
Sbjct: 154 GITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIES 213

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VF+ +  +      W ++ISG ++ G  E+AI L+  M    + P  +    VL A 
Sbjct: 214 AKKVFNCICMKDIVT--WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAS 271

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             + L  +GE++H   +++GF  + +V N LV +Y++   ++ A  +F  + ++D +SYN
Sbjct: 272 TKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYN 331

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           S+++G +  G    A ++F  M  +   PD + ++S+L   A+   L  G Q+H   ++ 
Sbjct: 332 SLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA 391

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-DH--EALIYF 378
           G+  D+ +  SL+ +YSK   ++ A   F     +++V WN ++ A+ + D+  ++   F
Sbjct: 392 GMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM+ +G++P+  T+ S+L  C  LG++ +GE++ + ++ K G    V   + ++++Y +
Sbjct: 452 RQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI-KTGFQLNVYVCSVLIDMYAK 510

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G +  A ++ + +   E   V W A++
Sbjct: 511 YGQL--ALALRILRRLPEDDVVSWTAMI 536



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 19/303 (6%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +Q  E     GI      FAS +  C  ++A+  G ++H          +  I++ L+ L
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G I EA+  F+++ ++   +  WNSL+SG A+ G +E+A+ ++ +M     E + F
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNIS--WNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMF 666

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T+   + A A L  I+ G+++H   ++ G+  +  V N+L+ +YAK G I  A   F+ +
Sbjct: 667 TYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDM 726

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGA 312
             +++IS+N+M+TGY  HG  +EA  +F  M + G  P+ V    +L+  S   L++ G 
Sbjct: 727 SERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGL 786

Query: 313 -------QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSI 364
                  ++H  V +   E  +C+ + L     + G+LD+A      MP   D + W ++
Sbjct: 787 DYFESMFKIHDLVPKS--EHYVCVVDLL----GRAGQLDRAMEYIKEMPIPADAMIWRTL 840

Query: 365 IHA 367
           + A
Sbjct: 841 LSA 843


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 258/451 (57%), Gaps = 14/451 (3%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E  +QN   + T   ++L    +    V  G ++H L   N L     +++ L+ +YA  
Sbjct: 213 EEEIQNEFAL-TSVLSALTSDVF----VYTGRQVHSLAIKNGLLAIVSVANALVTMYAKC 267

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +D+A + F+   ++ +    W+++++GYA+ G+ + A+ L+ +M   GV P +FT   
Sbjct: 268 GSLDDAVRTFEFSGDKNSIT--WSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVG 325

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           V+ AC+ L  +  G+++H  A + GFG   +VL+A+VDMYAKCG +  AR  F+ +   D
Sbjct: 326 VINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPD 385

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHG 316
           ++ + S++TGY+ +G      +++  M +    P+ + ++S+L   S L     G Q+H 
Sbjct: 386 VVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHA 445

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
            +++ G + ++ I ++L  +Y+K G LD    +F  MP +DV+SWN++I   S++   ++
Sbjct: 446 RIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNK 505

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  FE+M  +G+ PD +TFV+LLSAC+H+G V  G   F +M +++ I+P VEHYACMV
Sbjct: 506 ALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMV 565

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++  RAG ++EA   I E    +    +W  LL AC  H N  +G  A +KL EL     
Sbjct: 566 DILSRAGKLNEAKEFI-ESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPES 624

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             + LL  IY   G  ++VERV R++  RG+
Sbjct: 625 SAYVLLSSIYTALGDRENVERVRRIMKARGV 655



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 223/483 (46%), Gaps = 47/483 (9%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           N +     T A +      L  V  G + H +        +  + S LL +Y   G + +
Sbjct: 112 NNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFD 171

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++FD+M  R   +  W ++ISGYA     + A+ ++  M  E    ++F    VL A 
Sbjct: 172 ARKLFDRMPERNTVS--WATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSAL 229

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                +  G +VH  A++ G      V NALV MYAKCG +  A   F+  G+K+ I+++
Sbjct: 230 TSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWS 289

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRR 321
           +M+TGY   G   +A  +F  M  +G  P    +  ++   S L     G Q+H +  + 
Sbjct: 290 AMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKL 349

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYF 378
           G    L + ++++ +Y+K G L  A   F+ + Q DVV W SII  +  + D+E  L  +
Sbjct: 350 GFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLY 409

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M+ + V+P+ LT  S+L AC+ L ++  G+++ + ++ KYG    V   + +  +Y +
Sbjct: 410 GKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARII-KYGFKLEVPIGSALSAMYTK 468

Query: 439 AGLIDEAY---------------SMI---------------VEKMEFEA---SPVVWGAL 465
            G +D+ Y               +MI                EKM  E     PV +  L
Sbjct: 469 CGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNL 528

Query: 466 LYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVD 521
           L AC   G V  G    + +F+   + P  EH +  ++ I   AG+L++  E +E   VD
Sbjct: 529 LSACSHMGLVDRGWEYFKMMFDEFNIAPMVEH-YACMVDILSRAGKLNEAKEFIESATVD 587

Query: 522 RGL 524
            GL
Sbjct: 588 HGL 590



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 186/356 (52%), Gaps = 13/356 (3%)

Query: 101 CYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           C   K +  G  LH R++ T  +  +  +++  L LYA    +  A  +FD +++     
Sbjct: 21  CTHNKNILKGRTLHARILKTGSI-SSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDD 79

Query: 160 FPWNSLISGYAE---LGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
             WNSLI+ +++         AI+L+ +M     V P+  T   V  A + L  +  G++
Sbjct: 80  VSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQ 139

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            H  AV+ G   D +V ++L++MY K G +  AR +FDR+  ++ +S+ +M++GY    +
Sbjct: 140 AHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDI 199

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANS 332
             +A ++F  M       +  A++S+L+  +    +  G QVH   ++ G+   + +AN+
Sbjct: 200 ADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANA 259

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPD 389
           L+ +Y+K G LD A   F+    K+ ++W++++  +++     +AL  F +M   GVLP 
Sbjct: 260 LVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPS 319

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             T V +++AC+ L +V  G+++ S    K G   ++   + +V++Y + G + +A
Sbjct: 320 EFTLVGVINACSDLCAVVEGKQMHSFAF-KLGFGLQLYVLSAVVDMYAKCGSLADA 374


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 242/452 (53%), Gaps = 13/452 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V   + +   T  S+L  C  LK +E G  +H+L+    L     + + L+ +Y   G +
Sbjct: 210 VNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  VFD+M  R      W  +I+GY E G+ E+A+ L   M+ EGV P+  T   ++ 
Sbjct: 270 DEARFVFDRMERRDVIT--WTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVS 327

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C     +  G+ +H  AVR     D  +  +L+ MYAKC  +     VF          
Sbjct: 328 VCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP 387

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVL 319
           +++++ G + + L+ +A  +F+ M     +P+   ++S+L A A+L  LR    +H ++ 
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK----DVVSWNSIIHA---HSKDH 372
           + G    L  A  L+ VYSK G L+ A  +F+ + +K    DVV W ++I     H   H
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGH 507

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
            AL  F +M R GV P+ +TF S L+AC+H G V+ G  LF  M+E Y    R  HY C+
Sbjct: 508 NALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCI 567

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L GRAG +DEAY++I   + FE +  VWGALL AC  H NV +GE AA KLFELEP+N
Sbjct: 568 VDLLGRAGRLDEAYNLIT-TIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPEN 626

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             N+ LL  IY   GR  D+E+V  M+ + GL
Sbjct: 627 TGNYVLLANIYAALGRWKDMEKVRSMMENVGL 658



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 202/393 (51%), Gaps = 14/393 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           N      + + SLL      +++     LH  + T   R +  I S L   YA  G I  
Sbjct: 9   NNALSSVKQYQSLLNHFAATQSISKTKALHCHVITGG-RVSGHILSTLSVTYALCGHITY 67

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVLK 202
           A ++F++M   +  ++  N +I  Y   G Y DAI+++ +M  EGV+  PD +T+P V K
Sbjct: 68  ARKLFEEMPQSSLLSY--NIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAK 125

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A   L  +++G  VH   +R  FG D +V NAL+ MY   G +  AR VFD + N+D+IS
Sbjct: 126 AAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVIS 185

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVL 319
           +N+M++GY  +G + +A  +F  M+    D D   I S+L     L+   +G  VH  V 
Sbjct: 186 WNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVE 245

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
            + +   + + N+L+ +Y K G++D+A ++FD M ++DV++W  +I+ +++D     AL 
Sbjct: 246 EKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALE 305

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
               M+ +GV P+ +T  SL+S C     V  G+ L    V +   S  +   + ++++Y
Sbjct: 306 LCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETS-LISMY 364

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            +   +D  + +     ++   P  W A++  C
Sbjct: 365 AKCKRVDLCFRVFSGASKYHTGP--WSAIIAGC 395


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 251/443 (56%), Gaps = 46/443 (10%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           KN    + L+ LY   G  + A   F++M +R   +  WNS+ISGY++ G   +A+A++ 
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVS--WNSMISGYSQQGYNLEALAIFS 263

Query: 184 QM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           +M  E  ++PD FT   +L ACA L  + +G+++H   +R      G V NAL+ MYAK 
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 243 G---------------------------------DIVKARTVFDRIGNKDLISYNSMLTG 269
           G                                 ++  AR +F+++ ++D++++ +M+ G
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWD 326
           Y+ +GL  +A ++FR M+  G +P+   ++++L+ +S L I   G Q+H   ++ G    
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHA---HSKDHEALIYFEQM 381
             + N+LI +Y+K G ++ A  +FD +P  +K++VSW S+I A   H    EA+  FE+M
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM 502

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+ PDH+T+V +LSAC H+G V+ G + +++M E + I P + HYACM++LYGRAGL
Sbjct: 503 LSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGL 562

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
           + EAY + +E M  E   + WG+LL +C +H N  + + AA++L  ++P N   +  L  
Sbjct: 563 LQEAY-LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALAN 621

Query: 502 IYGNAGRLDDVERVERMLVDRGL 524
           +Y   G+ ++  +  +++ DRG+
Sbjct: 622 VYSACGKWENAAQTRKLMKDRGV 644



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 227/512 (44%), Gaps = 116/512 (22%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
             +E FA +L+T  ++K    G  +H  I    L     + + L+  YA  G +  AH V
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHV 67

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYE-------------------------------D 177
           FD+M  ++ F+  WN+LISGYA+ G +E                               +
Sbjct: 68  FDEMPLKSTFS--WNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDN 125

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           AI ++ +M  E V P QFT   VL +CA    + +G K+H   V+ G G    V  +L++
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 238 MYAKCGDIVKARTVFDRIG-------------------------------NKDLISYNSM 266
           MYAKCGD V A+ VFDR+                                ++D++S+NSM
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

Query: 267 LTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++GY   G  +EA  IF  M+      PD   ++SIL   AN   L IG Q+H ++LR  
Sbjct: 246 ISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDH------------------------------ 352
            E    + N+LI +Y+K G ++ A  + +H                              
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 353 ---MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
              +  +DVV+W ++I  + ++   ++AL  F  M  +G  P+  T  ++LS  + L  +
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           + G+++ +  + K G S        ++ +Y + G I+ A   + +    +   V W +++
Sbjct: 426 EHGKQIHASAI-KAGESSTPSVTNALIAMYAKTGNINVA-KRVFDLPNGKKEIVSWTSMI 483

Query: 467 YACYLHGNVCMGETAAQKLFE------LEPDN 492
            A   HG   +G+ A   LFE      ++PD+
Sbjct: 484 MALAQHG---LGKEAIN-LFERMLSVGMKPDH 511



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 135/332 (40%), Gaps = 63/332 (18%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G    + T A++L     L  +EHG ++H             +++ L+ +YA  G I
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI 460

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A +VFD + N       W S+I   A+ G  ++AI L+ +M   G++PD  T+  VL 
Sbjct: 461 NVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  +GL+  G K +                   +M  +  +I              L  
Sbjct: 520 ACTHVGLVEQGRKYY-------------------NMMTEVHEI-----------EPTLSH 549

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA------NASLLRIGAQVHG 316
           Y  M+  Y   GLL EA+     M +   +PD +A  S+LA      NA L ++ A+   
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPI---EPDNIAWGSLLASCKIHKNADLAKVAAERLL 606

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV-----VSW---------- 361
            +        L +AN    VYS  GK + A      M  + V     +SW          
Sbjct: 607 LIDPGNSGAYLALAN----VYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAF 662

Query: 362 --NSIIHAHSKDHEALI--YFEQMERDGVLPD 389
               +IH    +   L+   +E++++ G +PD
Sbjct: 663 GVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPD 694


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 171/499 (34%), Positives = 279/499 (55%), Gaps = 44/499 (8%)

Query: 62  KAFPKTKLQALDSIIQDLESSVQNGITVQT----------------ETFASLLETCYQLK 105
           K   KT + + +SII D   S   G ++Q                  TF   +++C  L 
Sbjct: 44  KYVDKTSVYSWNSIIADFARS---GDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLY 100

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
            +  G ++H+         +  ++S L+ +Y+  G +++A ++FD++  R   +  W S+
Sbjct: 101 DLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVS--WTSM 158

Query: 166 ISGYAELGEYEDAIAL-----------YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           ISGY +     +A+ L           Y ++   GV  D      V+ ACA + +  V E
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            VH  AV+ GF     V N L+D YAKCG+I  +R VFD +   D+ S+NS++  Y  +G
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 275 LLVEAFDIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           L VEAF +F  M+  G    + V +S++L   A++  L+IG  +H  V++  +E +L + 
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDG 385
            S++ +Y K G+++ A   FD + +K+V SW  ++     H H K  EA+  F +M R G
Sbjct: 339 TSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGK--EAMKVFYEMIRCG 396

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+++TFVS+L+AC+H G +K G   F+ M  ++ + P +EHY+CMV+L GRAG + EA
Sbjct: 397 IKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEA 456

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y +I ++M+ +   +VWG+LL AC +H NV +GE +A+KLF+L+P N   + LL  IY +
Sbjct: 457 YGLI-QEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYAD 515

Query: 506 AGRLDDVERVERMLVDRGL 524
           AGR DDVER+  ++ + GL
Sbjct: 516 AGRWDDVERMRILMKNHGL 534



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 209/418 (50%), Gaps = 55/418 (13%)

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            +F +  ++T+  + WNS+I+ +A  G+   A+  +  M +  + P++ TFP  +K+C+ 
Sbjct: 40  SMFGKYVDKTS-VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L  +  G+++H  A  FG+G D FV +AL+DMY+KCG +  AR +FD I  ++++S+ SM
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 267 LTGYIHHGLLVEAFDIFRGMIL-NGFDPDPV-------------AISSILANASLLRIGA 312
           ++GY+ +    EA  +F+  +L +  D D +              + S  A   +  +  
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
            VHG  +++G E  L + N+L+  Y+K G++  +  +FD M + DV SWNS+I  ++++ 
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 373 ---EALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLF--------------- 413
              EA   F  M + G V  + +T  ++L ACAH G++++G+ +                
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 414 SVMVEKYGISPRVE---------------HYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           + +V+ Y    RVE                +  MV  YG  G   EA  +  E +     
Sbjct: 339 TSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK 398

Query: 459 P--VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
           P  + + ++L AC   G +  G     K+   F++EP  EH +  ++ + G AG L +
Sbjct: 399 PNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEH-YSCMVDLLGRAGYLKE 455


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 260/511 (50%), Gaps = 75/511 (14%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ GI     T  ++L +    + +E G K+H  I    LR N  +S+ LL +YA  G  
Sbjct: 138 VKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV------------ 190
             A  VFD+M  R   +  WN++I+ + ++G+ + A+A + QM E  +            
Sbjct: 198 MMAKFVFDRMVVRDISS--WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQ 255

Query: 191 --------------------EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
                                PD+FT   VL ACA L  + +G+++H   V  GF   G 
Sbjct: 256 RGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGI 315

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDL------------------------------ 260
           VLNAL+ MY++CG +  AR + ++ G KDL                              
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKD 375

Query: 261 ---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQV 314
              +++ +M+ GY  HG   EA ++FR M+  G  P+   ++++L+ AS L     G Q+
Sbjct: 376 RDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQI 435

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA---HSK 370
           HG  ++ G  + + ++N+LI +Y+K G +  A   FD +  ++D VSW S+I A   H  
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EAL  FE M  +G+ PDH+T+V + SAC H G V  G + F +M +   I P + HYA
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L+GRAGL+ EA   I EKM  E   V WG+LL AC +H N+ +G+ AA++L  LEP
Sbjct: 556 CMVDLFGRAGLLQEAQEFI-EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEP 614

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           +N   +  L  +Y   G+ ++  ++ + + D
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKD 645



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 197/438 (44%), Gaps = 85/438 (19%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  Y+  G +D   + FDQ+  R + +  W ++I GY  +G+Y  AI +   M +EG+E
Sbjct: 86  VLSAYSKRGDMDSTCEFFDQLPQRDSVS--WTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P QFT   VL + A    +  G+KVH   V+ G   +  V N+L++MYAKCGD + A+ V
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203

Query: 252 FDR-------------------------------IGNKDLISYNSMLTGYIHHGLLVEAF 280
           FDR                               +  +D++++NSM++G+   G  + A 
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL 263

Query: 281 DIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
           DIF  M+ +    PD   ++S+L   AN   L IG Q+H  ++  G +    + N+LI +
Sbjct: 264 DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323

Query: 337 YS---------------------------------KDGKLDQACWLFDHMPQKDVVSWNS 363
           YS                                 K G ++QA  +F  +  +DVV+W +
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383

Query: 364 II---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     H    EA+  F  M   G  P+  T  ++LS  + L S+  G+++    V K 
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV-KS 442

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           G    V     ++ +Y +AG I  A S   + +  E   V W +++ A   HG+      
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSA-SRAFDLIRCERDTVSWTSMIIALAQHGHA----E 497

Query: 481 AAQKLFE------LEPDN 492
            A +LFE      L PD+
Sbjct: 498 EALELFETMLMEGLRPDH 515



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 133/263 (50%), Gaps = 41/263 (15%)

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            F  N ++  Y+K GD+      FD++  +D +S+ +M+ GY + G   +A  +   M+ 
Sbjct: 80  AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139

Query: 289 NGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G +P    ++++LA+ +  R    G +VH ++++ G+  ++ ++NSL+ +Y+K G    
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSK----------------------------------D 371
           A ++FD M  +D+ SWN++I  H +                                  D
Sbjct: 200 AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYD 259

Query: 372 HEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHY 429
             AL  F +M RD +L PD  T  S+LSACA+L  + +G+++ S ++   + IS  V + 
Sbjct: 260 LRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN- 318

Query: 430 ACMVNLYGRAGLIDEAYSMIVEK 452
             ++++Y R G ++ A  +I ++
Sbjct: 319 -ALISMYSRCGGVETARRLIEQR 340



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 158/347 (45%), Gaps = 47/347 (13%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           NQ+ +    L+ALD   + L  S+   ++    T AS+L  C  L+ +  G ++H  I T
Sbjct: 254 NQRGYD---LRALDIFSKMLRDSL---LSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE----- 174
                +  + + L+ +Y+  G ++ A ++ +Q   +      + +L+ GY +LG+     
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367

Query: 175 --------------------------YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
                                     Y +AI L+  M   G  P+ +T   +L   + L 
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYNSML 267
            +  G+++H  AV+ G  +   V NAL+ MYAK G+I  A   FD I   +D +S+ SM+
Sbjct: 428 SLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMI 487

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVE 324
                HG   EA ++F  M++ G  PD    V + S   +A L+  G Q   + + + V+
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY--FDMMKDVD 545

Query: 325 W---DLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
                L     ++ ++ + G L +A    + MP + DVV+W S++ A
Sbjct: 546 KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 46/193 (23%)

Query: 293 PDPVAISSIL----------ANASLLRIGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           P P+++S++L           N S  R  AQ VH  V++ G+ + + + N+L+ VYSK G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKD------------------------------ 371
               A  LFD MP +   SWN+++ A+SK                               
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 372 ----HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
               H+A+     M ++G+ P   T  ++L++ A    ++ G+++ S +V K G+   V 
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIV-KLGLRGNVS 182

Query: 428 HYACMVNLYGRAG 440
               ++N+Y + G
Sbjct: 183 VSNSLLNMYAKCG 195


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 259/462 (56%), Gaps = 16/462 (3%)

Query: 76  IQDLESSVQ-------NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           I DL  S +        GI     T+  +L TC     +E G ++H L   N    +  +
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           S  L+ +Y+ +  +D+A ++ + +  R   +  W S+I+GY +    E+A+A + +M++ 
Sbjct: 384 SGVLIDMYSKYRCLDKARKILEMLEKRDVVS--WTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV PD         ACAG+  +R G ++H      G+  D  + N LV++YA+CG   +A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANA 305
            ++F  I +KD I++N +++G+    L  +A  +F  M   G   +    ++  S LAN 
Sbjct: 502 FSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANL 561

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           + ++ G QVHG  ++ G   +  +AN+LI +Y K G ++ A  +F  M  ++ VSWN+II
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTII 621

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
            +   H +  EAL  F+QM+++G+ P+ +TF+ +L+AC+H+G V+ G   F  M   YG+
Sbjct: 622 TSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGL 681

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +P  +HYAC+V++ GRAG +D A    V++M   A+ ++W  LL AC +H N+ +GE AA
Sbjct: 682 NPIPDHYACVVDILGRAGQLDRA-RRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA 740

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + L ELEP +  ++ LL   Y   G+  + ++V +M+ DRG+
Sbjct: 741 KHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGI 782



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 210/395 (53%), Gaps = 11/395 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T ASLL  C  +  ++ G +LH  +    +  +      LL LY   G I+ 
Sbjct: 239 SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIET 298

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH +F+ + +RT     WN ++  Y ++ +   +  ++ QM+  G+ P++FT+P +L+ C
Sbjct: 299 AHDIFN-LGDRTNVVL-WNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
              G I +GE++H  +++ GF  D +V   L+DMY+K   + KAR + + +  +D++S+ 
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWT 416

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI---SSILANASLLRIGAQVHGWVLRR 321
           SM+ GY+ H    EA   F+ M   G  PD + +   +S  A    +R G Q+H  V   
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS 476

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ I N+L+ +Y++ G+ ++A  LF  +  KD ++WN +I    +     +AL+ F
Sbjct: 477 GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVF 536

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M + G   +  TF+S +SA A+L  +K G+++    V K G +   E    +++LYG+
Sbjct: 537 MKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV-KTGHTSETEVANALISLYGK 595

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            G I++A  MI  +M    + V W  ++ +C  HG
Sbjct: 596 CGSIEDA-KMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 190/366 (51%), Gaps = 13/366 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM- 152
            +S+L  C + K    G  +H  +          + + L+ LY  FG    A +VF  M 
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML 206

Query: 153 -SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
             +R  F    N+LISG+A+ G  E A+ ++ +M+  G+ PD  T   +L ACA +G ++
Sbjct: 207 FCDRVTF----NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H   ++ G  FD     +L+D+Y KCGDI  A  +F+     +++ +N ML  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
               L ++F+IF  M   G  P+      IL   +    + +G Q+H   ++ G E D+ 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           ++  LI +YSK   LD+A  + + + ++DVVSW S+I     H    EAL  F++M+  G
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD++   S  SACA + +++ G ++ +  V   G +  +  +  +VNLY R G  +EA
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHA-RVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 446 YSMIVE 451
           +S+  E
Sbjct: 502 FSLFRE 507



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 202/393 (51%), Gaps = 19/393 (4%)

Query: 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
           +++H       L  ++ I + L+ LYA  GL+ +A QVF ++S+R   +  W +++SGYA
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVS--WVAMLSGYA 120

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           + G  ++A  LY QM    V P  +    VL AC    L   G  +H    +  F  + F
Sbjct: 121 QRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V NAL+ +Y   G    A  VF  +   D +++N++++G+   G    A  IF  M L+G
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 291 FDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
             PD V ++S+LA  +    L+ G Q+H ++L+ G+ +D     SL+ +Y K G ++ A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSLLSACAHLG 404
            +F+   + +VV WN ++ A+ +  +    FE   QM+  G+ P+  T+  +L  C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            +++GE++ S+ + K G    +     ++++Y +   +D+A   I+E +E +   V W +
Sbjct: 361 QIELGEQIHSLSI-KNGFESDMYVSGVLIDMYSKYRCLDKARK-ILEMLE-KRDVVSWTS 417

Query: 465 LLYACYLHGNVCMGETAAQKLFELE-----PDN 492
           ++ A Y+  + C  E A     E++     PDN
Sbjct: 418 MI-AGYVQHDFC--EEALATFKEMQDCGVWPDN 447


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 146/403 (36%), Positives = 238/403 (59%), Gaps = 9/403 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + +++L ++   G++ +A ++FD+M  R   +  WN++ISG  ++G++ +A  L+  M E
Sbjct: 12  MRNRVLLMHVKCGMMIDARRLFDEMPERNLVS--WNTIISGLVDVGDFMEAFRLFLNMWE 69

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           E  +   FTF  +++A AGL LI +G ++H   ++ G G D FV  AL+DMY+KCG I  
Sbjct: 70  EFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIED 129

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR VF+ +  K  + +N+++ GY  HG   EA D++  M  +G   D    S I+   A 
Sbjct: 130 ARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICAR 189

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            + +    Q H  ++R G   D+    +L+  YSK G+++ A  +FD M  K+V+SWN++
Sbjct: 190 LASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNAL 249

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H +  EA+  FEQM ++ + P+H+TF+++LSAC+H G  + G  +F  M     
Sbjct: 250 IGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNR 309

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I PR  HYACM+ L GR GL+DEA ++I     F+ +  +W ALL AC ++ N  +G+ A
Sbjct: 310 IKPRAMHYACMIELMGREGLLDEALALI-RGAPFKPTANMWAALLTACRVNENFELGKFA 368

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           A+KL+ +EPD  +N+ +L+ IY +AG L +   V   L  +GL
Sbjct: 369 AEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGL 411



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 180/365 (49%), Gaps = 47/365 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA ++     L+ +  G +LH       +  +  +S  L+ +Y+  G I++A  VF++M
Sbjct: 78  TFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEM 137

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +T     WN++I+GYA  G  E+A+ +Y++M + GV+ D FTF  +++ CA L  +  
Sbjct: 138 PEKTTVG--WNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEH 195

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++ H   +R GFG D     ALVD Y+K G I  AR VFD++ +K++IS+N+++ GY +
Sbjct: 196 AKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGN 255

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA-- 330
           HG   EA ++F  MI    +P+ +   ++L+  S    G    GW + + +  D  I   
Sbjct: 256 HGRGSEAVELFEQMIQERMNPNHITFLAVLSACS--HSGLSERGWEIFQSMGRDNRIKPR 313

Query: 331 ----NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386
                 +I +  ++G LD+A  L    P K                              
Sbjct: 314 AMHYACMIELMGREGLLDEALALIRGAPFK------------------------------ 343

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISP-RVEHYACMVNLYGRAGLIDE 444
            P    + +LL+AC    + ++G+       EK YG+ P ++ +Y  ++N+Y  AG + E
Sbjct: 344 -PTANMWAALLTACRVNENFELGK----FAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKE 398

Query: 445 AYSMI 449
           A  ++
Sbjct: 399 AADVV 403



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 147/270 (54%), Gaps = 13/270 (4%)

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           GF FD ++ N ++ M+ KCG ++ AR +FD +  ++L+S+N++++G +  G  +EAF +F
Sbjct: 5   GFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLF 64

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M     D      + ++   A   L+ IG Q+H   L+ G+  D+ ++ +LI +YSK 
Sbjct: 65  LNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKC 124

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G ++ A ++F+ MP+K  V WN+II     H    EAL  + +M   GV  DH TF  ++
Sbjct: 125 GSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIV 184

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
             CA L SV+  ++  + ++ ++G    +     +V+ Y + G I++A   + +KM    
Sbjct: 185 RICARLASVEHAKQAHAALI-RHGFGSDIVANTALVDFYSKWGRIEDA-RHVFDKMA-SK 241

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           + + W AL+     +GN   G  A + LFE
Sbjct: 242 NVISWNALIGG---YGNHGRGSEAVE-LFE 267



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+ +   TF+ ++  C +L +VEH  + H  +  +    +   ++ L+  Y+ +G I++
Sbjct: 171 SGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIED 230

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VFD+M+++   +  WN+LI GY   G   +A+ L+ QM +E + P+  TF  VL AC
Sbjct: 231 ARHVFDKMASKNVIS--WNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSAC 288

Query: 205 AGLGLIRVGEKV 216
           +  GL   G ++
Sbjct: 289 SHSGLSERGWEI 300



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 13/214 (6%)

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEA 374
           ++  G E+D  + N +++++ K G +  A  LFD MP++++VSWN+II          EA
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F  M  +       TF  ++ A A L  + +G +L +  + K GI   +     +++
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTL-KMGIGDDIFVSCALID 119

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD--- 491
           +Y + G I++A   + E+M  E + V W  ++    LHG     E A    +E+      
Sbjct: 120 MYSKCGSIEDA-RFVFEEMP-EKTTVGWNTIIAGYALHG---YSEEALDMYYEMRDSGVK 174

Query: 492 -NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +   F ++++I      ++  ++    L+  G 
Sbjct: 175 MDHFTFSMIVRICARLASVEHAKQAHAALIRHGF 208


>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 564

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 245/440 (55%), Gaps = 11/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L++C  L  ++ G+++   +       N  + S LL LYA  G +++A   FD M
Sbjct: 115 TYGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSM 174

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WNS+I GY      + + +L+  M  EG +PD FTF  +L+A   +  +  
Sbjct: 175 KERDLVS--WNSMIDGYTTNACVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEP 232

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
             ++H  A++ GFG    ++ +LVD Y KCG I  A  + +    +DLIS  +++TG+  
Sbjct: 233 VGQLHGLAIKLGFGRSSALIRSLVDAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQ 292

Query: 273 HGLLV-EAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDL 327
             +   +AFDIF  MIL     D V +SS+L      + + +G Q+HG+ L+   + +D+
Sbjct: 293 QNICTSDAFDIFNEMILMKTKMDEVVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDI 352

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + NSLI +Y+K G ++ A   F+ M +KDV SW S+I     H    +A+  + +ME +
Sbjct: 353 ALGNSLIDMYAKSGDIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHE 412

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ P+ +TF+SLLSAC+H G  ++G ++F+ M+ K+GI  R EH++C++++  R+G ++E
Sbjct: 413 GIKPNDVTFLSLLSACSHTGQTELGWKIFNKMINKHGIKAREEHFSCIIDMLARSGYLEE 472

Query: 445 AYSMIVEKME-FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           AY +I  K      S   WGA L AC  HGNV + + AA +L  +EP    N+  L  ++
Sbjct: 473 AYELIRSKDGIISLSSSTWGAFLDACRRHGNVQLSKVAASQLLSVEPKKPVNYINLASVH 532

Query: 504 GNAGRLDDVERVERMLVDRG 523
              G  D   +  +++ + G
Sbjct: 533 AANGAWDSALKTRQLMKESG 552



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 188/384 (48%), Gaps = 11/384 (2%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           L+ C      +  + +H    TN    N  ++  L+ LY   G +  A ++FD++  R  
Sbjct: 19  LKLCSYQNVKKQLLLIHGNSVTNGFGSNLQLNDMLIDLYLKQGDVKHARKLFDRIPKRDV 78

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            +  W ++IS ++  G + DA+ L+ QM  + V  +QFT+  VLK+C  LG ++ G ++ 
Sbjct: 79  VS--WTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQ 136

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
               +     +  V +AL+ +YA+CG +  AR  FD +  +DL+S+NSM+ GY  +  + 
Sbjct: 137 GCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDGYTTNACVD 196

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLI 334
            +F +F+ M   G  PD     S+L  + +++      Q+HG  ++ G      +  SL+
Sbjct: 197 TSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAIKLGFGRSSALIRSLV 256

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH----EALIYFEQMERDGVLPDH 390
             Y K G +  A  L +   ++D++S  ++I   ++ +    +A   F +M       D 
Sbjct: 257 DAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSDAFDIFNEMILMKTKMDE 316

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +   S+L  C  + SV VG ++    ++   I   +     ++++Y ++G I++A  +  
Sbjct: 317 VVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYAKSGDIEDAV-LAF 375

Query: 451 EKMEFEASPVVWGALLYACYLHGN 474
           E+M+ E     W +L+     HGN
Sbjct: 376 EEMK-EKDVRSWTSLIAGYGRHGN 398



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 132/258 (51%), Gaps = 7/258 (2%)

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           + + LK C+   + +    +H ++V  GFG +  + + L+D+Y K GD+  AR +FDRI 
Sbjct: 15  YLKALKLCSYQNVKKQLLLIHGNSVTNGFGSNLQLNDMLIDLYLKQGDVKHARKLFDRIP 74

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
            +D++S+ +M++ +   G   +A  +F+ M       +     S+L +      L+ G Q
Sbjct: 75  KRDVVSWTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQ 134

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           + G + +     +L + ++L+ +Y++ GK++ A   FD M ++D+VSWNS+I  ++ +  
Sbjct: 135 IQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDGYTTNAC 194

Query: 372 -HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
              +   F+ M  +G  PD  TF SLL A   +  ++   +L  + + K G         
Sbjct: 195 VDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAI-KLGFGRSSALIR 253

Query: 431 CMVNLYGRAGLIDEAYSM 448
            +V+ Y + G I  A+ +
Sbjct: 254 SLVDAYVKCGSIANAWKL 271


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 166/464 (35%), Positives = 260/464 (56%), Gaps = 16/464 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QALD     L+     GI +   T  S+L  C QL  +   + +H  +  + L  +  +S
Sbjct: 299 QALDV----LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVS 354

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +YA FG +++A + F QM      +  WNS+I+ Y +  +   A   + +M+  G
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVS--WNSIIAAYEQNDDPVTAHGFFVKMQLNG 412

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKA 248
            +PD  T   +    A     +    VH   +R G+  +  V+ NA+VDMYAK G +  A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---AN 304
             VF+ I  KD+IS+N+++TGY  +GL  EA ++++ M       P+     SIL   A+
Sbjct: 473 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L+ G ++HG V++  +  D+ +A  LI VY K G+L  A  LF  +PQ+  V+WN+I
Sbjct: 533 VGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAI 592

Query: 365 IHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  H       + L  F +M  +GV PDH+TFVSLLSAC+H G V+ G+  F +M ++YG
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYG 651

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P ++HY CMV+L GRAG ++ AY  I + M  +    +WGALL AC +HGN+ +G+ A
Sbjct: 652 IKPSLKHYGCMVDLLGRAGYLEMAYDFI-KDMPLQPDASIWGALLGACRIHGNIELGKFA 710

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + +LFE++  N   + LL  IY N G+ + V++V  +  +RGL+
Sbjct: 711 SDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 242/449 (53%), Gaps = 31/449 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  L     G K+H        + N  +++ L+ +Y+ FG    A  +FD M
Sbjct: 220 TFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 276

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++ISG  + G    A+ +  +M  EG++ +  T   +L  C  LG I  
Sbjct: 277 PFRDMGS--WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
              +HL  ++ G  FD FV NAL++MYAK G++  AR  F ++   D++S+NS++  Y  
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEW---D 326
           +   V A   F  M LNGF PD    V+++SI+A +   +    VHG+++RRG  W   D
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG--WLMED 452

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
           + I N+++ +Y+K G LD A  +F+ +P KDV+SWN++I  ++++    EA+  ++ ME 
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 384 -DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              ++P+  T+VS+L A AH+G+++ G ++   ++ K  +   V    C++++YG+ G +
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI-KTNLHLDVFVATCLIDVYGKCGRL 571

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNF 496
            +A S+  +    + S V W A++    +HG+         KLF       ++PD+   F
Sbjct: 572 VDAMSLFYQVP--QESSVTWNAIISCHGIHGHA----EKTLKLFGEMLDEGVKPDHV-TF 624

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L+    ++G +++ +   R++ + G++
Sbjct: 625 VSLLSACSHSGFVEEGKWCFRLMQEYGIK 653



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 187/340 (55%), Gaps = 18/340 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-ME 186
           IS++L+ LYA  G +  +   FDQ+  +  +A  WNS+IS Y   G + +AI  ++Q + 
Sbjct: 153 ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYA--WNSMISAYVHNGHFHEAIGCFYQLLL 210

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              + PD +TFP VLKAC   G +  G K+H  A + GF ++ FV  +L+ MY++ G   
Sbjct: 211 VSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR++FD +  +D+ S+N+M++G I +G   +A D+   M L G   + V + SIL    
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327

Query: 307 LL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            L        +H +V++ G+E+DL ++N+LI +Y+K G L+ A   F  M   DVVSWNS
Sbjct: 328 QLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNS 387

Query: 364 IIHAHSKDHEALI---YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           II A+ ++ + +    +F +M+ +G  PD LT VSL S  A     K    +   ++ + 
Sbjct: 388 IIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG 447

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
            +   V     +V++Y + GL+D A+ +      FE  PV
Sbjct: 448 WLMEDVVIGNAVVDMYAKLGLLDSAHKV------FEIIPV 481



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 7/243 (2%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL- 288
           F+   LV++YA  GD+  +R  FD+I  KD+ ++NSM++ Y+H+G   EA   F  ++L 
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           +   PD      +L     L  G ++H W  + G +W++ +A SLI +YS+ G    A  
Sbjct: 212 SEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 349 LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           LFD MP +D+ SWN++I     +    +AL   ++M  +G+  + +T VS+L  C  LG 
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           +     L  + V K+G+   +     ++N+Y + G +++A      +  F    V W ++
Sbjct: 332 ISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF--QQMFITDVVSWNSI 388

Query: 466 LYA 468
           + A
Sbjct: 389 IAA 391



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 23/224 (10%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           +H  ++  G    + I+  L+ +Y+  G +  +   FD +PQKDV +WNS+I A+  +  
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 372 -HEAL-IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
            HEA+  +++ +    + PD  TF  +L AC  L    V  R       K G    V   
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL----VDGRKIHCWAFKLGFQWNVFVA 253

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           A ++++Y R G    A S+  + M F      W A++     +GN      AAQ L  L+
Sbjct: 254 ASLIHMYSRFGFTGIARSLF-DDMPFRDMG-SWNAMISGLIQNGN------AAQALDVLD 305

Query: 490 PDN----EHNFELLIKIYGNAGRLDDVER---VERMLVDRGLEF 526
                  + NF  ++ I     +L D+     +   ++  GLEF
Sbjct: 306 EMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF 349


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/423 (34%), Positives = 254/423 (60%), Gaps = 10/423 (2%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           HG+++H     N L  +  + + L+ +YA F  +     +FD+M ++   +  W ++I+G
Sbjct: 401 HGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS--WTTIIAG 458

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           +A+ G +  A+ L+ +++ EG++ D      +L AC+GL LI   +++H   +R G   D
Sbjct: 459 HAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-D 517

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             + N +VD+Y +CG++  A  +F+ I  KD++S+ SM++ Y+H+GL  EA ++F  M  
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 577

Query: 289 NGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G +PD +++ SIL+ A+ L   + G ++HG+++R+G   +  +A++L+ +Y++ G L++
Sbjct: 578 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 637

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +  +F+ +  KD+V W S+I+A   H     A+  F +ME + + PDH+ FV++L AC+H
Sbjct: 638 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 697

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G +  G R    M  +Y + P  EHYAC+V+L GRA  ++EAY   V+ ME E +  VW
Sbjct: 698 SGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQ-FVKGMEVEPTAEVW 756

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            ALL AC +H N  +GE AAQKL E++P+N  N+ L+  +Y    R  DVE V   +   
Sbjct: 757 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKAS 816

Query: 523 GLE 525
           GL+
Sbjct: 817 GLK 819



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 227/420 (54%), Gaps = 21/420 (5%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI +   TF  +L+ C  LK   +G ++H L           +++ ++ +Y     ++ 
Sbjct: 174 SGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNG 233

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A Q+FD+M  +      WNS+IS Y+  G+  +A+ L+ +M++  + P+ +TF   L+AC
Sbjct: 234 ARQLFDRMPEKEDVV-SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 292

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                I+ G  +H   ++  +  + FV NAL+ MYA+ G + +A  +F  + + D IS+N
Sbjct: 293 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 352

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           SML+G++ +GL  EA   +  M   G  PD VA+ SI+A ++       G Q+H + ++ 
Sbjct: 353 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN 412

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ DL + NSL+ +Y+K   +     +FD MP KDVVSW +II  H+++     AL  F
Sbjct: 413 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 472

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +++ +G+  D +   S+L AC+ L  +   + + S ++ K G+S  V     +V++YG 
Sbjct: 473 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGE 530

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL------EPDN 492
            G +D A  M  E +EF+   V W +++ +CY+H  +      A +LF L      EPD+
Sbjct: 531 CGNVDYAARMF-ELIEFK-DVVSWTSMI-SCYVHNGLA---NEALELFHLMKETGVEPDS 584



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 219/405 (54%), Gaps = 15/405 (3%)

Query: 42  RITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETC 101
           +I+ F   P  +P+     ++       Q+L  +  + +S  Q  +    E ++S+LE C
Sbjct: 33  KISKFPLKPVETPSLREICKRGSVNEAFQSLTDLFAN-QSPSQFSLD---EAYSSVLELC 88

Query: 102 YQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
              KA+  G ++H  +I +N L  +  +S++L+ +Y   G + +A ++FD M ++T F  
Sbjct: 89  GSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT- 147

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            WN++I  Y   GE   ++ LY +M   G+  D  TFP +LKAC  L   R G +VH  A
Sbjct: 148 -WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLA 206

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEA 279
           ++ G+    FV N++V MY KC D+  AR +FDR+  K D++S+NSM++ Y  +G  +EA
Sbjct: 207 IKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEA 266

Query: 280 FDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             +F  M      P+    VA      ++S ++ G  +H  VL+     ++ +AN+LI +
Sbjct: 267 LRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAM 326

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
           Y++ GK+ +A  +F +M   D +SWNS++    ++   HEAL ++ +M   G  PD +  
Sbjct: 327 YARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAV 386

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           +S+++A A  G+   G ++ +  + K G+   ++    +V++Y +
Sbjct: 387 ISIIAASARSGNTLHGMQIHAYAM-KNGLDSDLQVGNSLVDMYAK 430



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR-----LYATFG 140
           GI +     +S+L  C  LK +    ++H  I        KG+S  +L+     +Y   G
Sbjct: 479 GIDLDVMMISSILLACSGLKLISSVKEIHSYII------RKGLSDLVLQNGIVDVYGECG 532

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +D A ++F+ +  +   +  W S+IS Y   G   +A+ L+  M+E GVEPD  +   +
Sbjct: 533 NVDYAARMFELIEFKDVVS--WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 590

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L A A L  ++ G+++H   +R GF  +G + + LVDMYA+CG + K+R VF+ I NKDL
Sbjct: 591 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 650

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           + + SM+  Y  HG    A D+FR M      PD +A  ++L   S
Sbjct: 651 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+   + +  S+L     L A++ G ++H  +          ++S L+ +YA  G ++
Sbjct: 577 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLE 636

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           ++  VF+ + N+      W S+I+ Y   G    AI L+ +ME+E + PD   F  VL A
Sbjct: 637 KSRNVFNFIRNKDLVL--WTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 694

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKA 248
           C+  GL+  G +  L+++++ +  + +  +   LVD+  +   + +A
Sbjct: 695 CSHSGLMNEGRRF-LESMKYEYQLEPWPEHYACLVDLLGRANHLEEA 740


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 258/447 (57%), Gaps = 11/447 (2%)

Query: 81  SSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           S V+N + + +      LL+ C + ++   G   H  I    L  +   S+ L+ +Y+  
Sbjct: 32  SKVENVVHIDRVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKC 91

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
            L+D A + F++M  ++  +  WN++I    +  E  +A+ L  QM+ EG   ++FT   
Sbjct: 92  SLVDSARKKFNEMPVKSLVS--WNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISS 149

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL  CA    I    ++H  +++     + FV  AL+ +YAKC  I  A  +F+ +  K+
Sbjct: 150 VLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKN 209

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
            ++++SM+ GY+ +G   EA  IFR   L GFD DP  ISS +   A  + L  G QVH 
Sbjct: 210 AVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHA 269

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHA---HSKDH 372
              + G   ++ +++SLI +Y+K G + +A  +F  + + + +V WN++I     H++  
Sbjct: 270 ISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAP 329

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA+I FE+M++ G  PD +T+V +L+AC+H+G  + G++ F +MV ++ +SP V HY+CM
Sbjct: 330 EAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCM 389

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           +++ GRAGL+ +AY +I E+M F A+  +WG+LL +C ++GN+   E AA+ LFE+EP+N
Sbjct: 390 IDILGRAGLVHKAYDLI-ERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNN 448

Query: 493 EHNFELLIKIYGNAGRLDDVERVERML 519
             N  LL  IY    + D+V R  ++L
Sbjct: 449 AGNHILLANIYAANKKWDEVARARKLL 475


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 247/446 (55%), Gaps = 10/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + T+  +L+ C +   +  G +  R         +  + + +L LYA  G +DEA
Sbjct: 100 GVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEA 159

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD+M  R      W ++I+G A+ G+  +A+ +Y QM ++ VE D      +++AC 
Sbjct: 160 MRVFDKMGRRDLVC--WTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACT 217

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG  ++G  +H   +R     D  V  +LVDMYAK G +  A  VF R+  K++IS+++
Sbjct: 218 TLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSA 277

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           +++G+  +G    A  +   M   G+ PD V++ S+L   S    L++G  VHG+++RR 
Sbjct: 278 LISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR- 336

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           + +D   + ++I +YSK G L  A  +FD +  +D +SWN+II +   H    EAL  F 
Sbjct: 337 LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFL 396

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM    V PDH TF SLLSA +H G V+ G   FS+MV +Y I P  +HYACMV+L  RA
Sbjct: 397 QMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRA 456

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G ++EA  +I E M  E    +W ALL  C  HG   +GE AA+K+ EL PD+   + L+
Sbjct: 457 GRVEEAQELI-ESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLV 515

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
              +  A R D+V  V +++   G++
Sbjct: 516 SNFFATARRWDEVAEVRKIMKKTGMK 541



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 228/414 (55%), Gaps = 29/414 (7%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           K+H L+    +  +   ++KL++ YA  G I+ A QVFD+       A  WN++I  Y+ 
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDA--WNAMIIAYSR 82

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G   +A++LY +M  EGV PD  T+  VLKAC     +R GE+    AV  G+G D FV
Sbjct: 83  RGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFV 142

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
             A++++YAKCG + +A  VFD++G +DL+ + +M+TG   +G   EA DI+R M     
Sbjct: 143 GAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRV 202

Query: 292 DPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           + D V +  ++   + L   ++G  +HG+++R+ +  D+ +  SL+ +Y+K+G L+ A  
Sbjct: 203 EGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASC 262

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F  M  K+V+SW+++I   +++     AL     M+  G  PD ++ VS+L AC+ +G 
Sbjct: 263 VFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGF 322

Query: 406 VKVGERLFSVMVEKYGISPRVEHYAC-----MVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +K+G+ +   +V +        H+ C     ++++Y + G +  A + + +++ F  S +
Sbjct: 323 LKLGKSVHGYIVRRL-------HFDCVSSTAVIDMYSKCGSLSFART-VFDQISFRDS-I 373

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDN---EH-NFELLIKIYGNAGRLD 510
            W A++ +  +HG+   GE A     ++   N   +H  F  L+  + ++G ++
Sbjct: 374 SWNAIIASYGIHGS---GEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVE 424


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 248/441 (56%), Gaps = 12/441 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+ C  L   + G  LH  +   +L  +  I + LL +YA  G +  A  +F++M
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R      W S+ISGY +     +A+ LY +MEE+G  PD+ T   ++ ACA L  + V
Sbjct: 141 GHRNKVV--WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGV 198

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G K+H             + +ALV+MYAKCGD+  AR VFD++ +KD+ ++++++ GY+ 
Sbjct: 199 GMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVK 258

Query: 273 HGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQVHGWVLRRGVEWDL 327
           +    EA  +FR  +  G +  P     +A+ S  A    L  G  VH ++ R      +
Sbjct: 259 NNRSTEALQLFRE-VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + NSLI ++SK G +D A  +FD M  KD++SWNS+++    H    EAL  F  M+  
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTT 377

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + PD +TF+ +L+AC+H G V+ G++LF  +   YG+  + EHY CMV+L  RAGL+ E
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A   I   M  +    +WG++L AC ++ N+ +GE AA+ L ELEP N+  + LL  IY 
Sbjct: 438 AREFI-RVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYA 496

Query: 505 NAGRLDDVERVERMLVDRGLE 525
                ++V++V  ++ ++G++
Sbjct: 497 RRKMWNEVKKVRELMNEKGIQ 517



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 194/362 (53%), Gaps = 25/362 (6%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKA 203
           A+ VF     R      WNS++  +        A+  Y +M E     PD+FTFP +LK 
Sbjct: 31  AYSVFAH--TRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKG 88

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L   +VG+ +H   V++    D ++   L++MYA CGD+  AR +F+R+G+++ + +
Sbjct: 89  CALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
            SM++GY+ +    EA  +++ M  +GF PD V ++++++  + L+   +G ++H  +  
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-- 206

Query: 321 RGVEWDLC--IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
           R ++  +C  + ++L+ +Y+K G L  A  +FD +  KDV +W+++I  + K++   EAL
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEAL 266

Query: 376 IYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
             F ++     + P+ +T ++++SACA LG ++ G R     + +      V     +++
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITRTQKGHSVSLNNSLID 325

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF-----ELE 489
           ++ + G ID A   I + M ++   + W +++    LHG   +G  A  +       +L+
Sbjct: 326 MFSKCGDIDAA-KRIFDSMSYK-DLISWNSMVNGLALHG---LGREALAQFHLMQTTDLQ 380

Query: 490 PD 491
           PD
Sbjct: 381 PD 382



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G +    T A+L+  C +LK +  G+KLH  I    ++    + S L+ +YA  G + 
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLK 202
            A QVFDQ+S++  +A  W++LI GY +     +A+ L+ ++     + P++ T   V+ 
Sbjct: 233 TARQVFDQLSDKDVYA--WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +  G  VH    R   G    + N+L+DM++KCGDI  A+ +FD +  KDLIS
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS 350

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +NSM+ G   HGL  EA   F  M      PD +    +L   S
Sbjct: 351 WNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACS 394


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 140/386 (36%), Positives = 230/386 (59%), Gaps = 9/386 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +FD++S  +     WN+L+SGY +   ++D + L+ +M+ + V+PD+ T   +L +C
Sbjct: 369 ARAMFDKISRPSVTT--WNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSC 426

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG++ +G +VH  +VRF    D FV + LVDMY+KCG I  AR +F+R+  +D++ +N
Sbjct: 427 SRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWN 486

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM++G   H L  EAFD F+ M  NG  P   + +S++   A  S +  G Q+H  +++ 
Sbjct: 487 SMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKD 546

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G + ++ + ++LI +Y+K G +D A   FD M  K++V+WN +IH ++++    +A+  F
Sbjct: 547 GYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLF 606

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E M      PD +TF+++L+ C+H G V      F+ M   YGI+P  EHY C+++  GR
Sbjct: 607 EYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGR 666

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + E  ++I + M  +  P+VW  LL AC +H N  +GE AA+ LF L+P N   + L
Sbjct: 667 AGRLVEVEALI-DNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVL 725

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  IY + GR  D   V  ++  RG+
Sbjct: 726 LSNIYASLGRHGDASGVRALMSSRGV 751



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 216/434 (49%), Gaps = 64/434 (14%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI----KLHRLIPTNLLRKNK 126
           ++D  ++      ++G+ V     +S+L +C Q  A E  +    +L + I   ++RK  
Sbjct: 221 SVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGF 280

Query: 127 G----ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           G    + + L+ +Y     +DEA +VFD + N +  +  WN LI+G+ + G Y  A+ + 
Sbjct: 281 GSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVS--WNILITGFGQAGSYAKALEVL 338

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
             MEE G EP++ T+  +L +C                                    K 
Sbjct: 339 NLMEESGSEPNEVTYSNMLASCI-----------------------------------KA 363

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
            D++ AR +FD+I    + ++N++L+GY    L  +  ++FR M      PD   ++ IL
Sbjct: 364 RDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVIL 423

Query: 303 ANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           ++ S   +L +G QVH   +R  +  D+ +A+ L+ +YSK G++  A  +F+ M ++DVV
Sbjct: 424 SSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVV 483

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            WNS+I     HS + EA  +F+QM  +G++P   ++ S++++CA L SV  G ++ + +
Sbjct: 484 CWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQI 543

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHG 473
           V K G    V   + ++++Y + G +D+A   +  +V K     + V W  +++    +G
Sbjct: 544 V-KDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTK-----NIVAWNEMIHGYAQNG 597

Query: 474 NVCMGETAAQKLFE 487
               GE A   LFE
Sbjct: 598 ---FGEKAVD-LFE 607



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 148/288 (51%), Gaps = 16/288 (5%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +D A  + D+M +R   +  WN++I+  A      +A+ LY  M  EG+ P  FT   
Sbjct: 88  GDLDAARALLDEMPDRNVVS--WNTVIAALARSERAGEALELYEGMLREGLVPTHFTLAS 145

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL AC  +  +  G + H  AV+ G   + FV NAL+ MY KCG +  A  +FD + + +
Sbjct: 146 VLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPN 205

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS-----------LL 308
            +S+ +M+ G +  G + +A  +F  M  +G   DPVA+SS+L + +             
Sbjct: 206 EVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAF 265

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
           R+G  +H  ++R+G   D  + NSLI +Y+K  ++D+A  +FD +P    VSWN +I   
Sbjct: 266 RLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGF 325

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
            +     +AL     ME  G  P+ +T+ ++L++C     V     +F
Sbjct: 326 GQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMF 373



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 124/234 (52%), Gaps = 19/234 (8%)

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           + +  NA +    + GD+  AR + D + +++++S+N+++          EA +++ GM+
Sbjct: 73  NAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGML 132

Query: 288 LNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
             G  P    ++S+L+     + L  G + HG  ++ G++ +L + N+L+ +Y+K G ++
Sbjct: 133 REGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVE 192

Query: 345 QACWLFDHMPQKDVVSWNS----IIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
            A  LFD M   + VS+ +    ++ A S D +AL  F +M R GV  D +   S+L +C
Sbjct: 193 DAVRLFDGMASPNEVSFTAMMGGLVQAGSVD-DALRLFARMCRSGVRVDPVAVSSVLGSC 251

Query: 401 AH--------LGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEA 445
           A         + + ++G+ + +++V K +G    V +   ++++Y +   +DEA
Sbjct: 252 AQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNS--LIDMYTKCMQMDEA 303



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 119/256 (46%), Gaps = 22/256 (8%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NG+     ++AS++ +C +L +V  G ++H  I  +   +N  + S L+ +YA  G +D+
Sbjct: 511 NGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDD 570

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A   FD M  +   A  WN +I GYA+ G  E A+ L+  M      PD  TF  VL  C
Sbjct: 571 ARVFFDCMVTKNIVA--WNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGC 628

Query: 205 AGLGLIRVGEKVH-LDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           +  GL  V E +   +++   +G          L+D   + G +V+   + D +  K D 
Sbjct: 629 SHSGL--VDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDP 686

Query: 261 ISYNSMLTG-YIHHGLLV---EAFDIFRGMILNGFDPDP-VAISSILA------NASLLR 309
           I +  +L    +HH   +    A  +FR   L+  +P P V +S+I A      +AS +R
Sbjct: 687 IVWEVLLAACAVHHNAELGECAAKHLFR---LDPKNPSPYVLLSNIYASLGRHGDASGVR 743

Query: 310 IGAQVHGWVLRRGVEW 325
                 G V  RG  W
Sbjct: 744 ALMSSRGVVKGRGYSW 759


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 246/433 (56%), Gaps = 9/433 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +  L++C  L+A   G  +H          +  +   LL LYA  G I +A ++F++M
Sbjct: 239 TISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEM 298

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                   PW+ +I+ YA+    ++A+ L+ +M +  V P+ FTF  VL+ACA    + +
Sbjct: 299 PKTDLI--PWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDL 356

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++FG   + FV NA++D+YAKCG+I  +  +F+ + +++ +++N+++ GY+ 
Sbjct: 357 GKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQ 416

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCI 329
            G    A ++F  M+ +   P  V  SS+L A+ASL  L  G Q+H   ++     D  +
Sbjct: 417 LGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVV 476

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGV 386
           ANSLI +Y+K G+++ A   FD M ++D VSWN++I     H    EAL  F+ M+    
Sbjct: 477 ANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDC 536

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ LTFV +LSAC++ G +  G+  F  M + Y I P +EHY CMV L GR G  DEA 
Sbjct: 537 KPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAM 596

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I E + ++ S +VW ALL AC +H  V +G   AQ + E+EP ++    LL  +Y  A
Sbjct: 597 KLIGE-IAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATA 655

Query: 507 GRLDDVERVERML 519
           GR D+V  V + +
Sbjct: 656 GRWDNVAFVRKYM 668



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 222/437 (50%), Gaps = 19/437 (4%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKL--QALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
           F   P+++    +T  + + +     QAL  I++      + G  V    F +LL+    
Sbjct: 93  FDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF----KEGHEVNPFVFTTLLKLLVS 148

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           +        LH  +       +  + + L+  Y+  G +D A  VFD +  +   +  W 
Sbjct: 149 MDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVS--WT 206

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
            +++ YAE   YE+++ L+ QM   G +P+ FT    LK+C GL    VG+ VH  A++ 
Sbjct: 207 GMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKG 266

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
            +  D FV  AL+++YAK G+I+ A+ +F+ +   DLI ++ M+  Y       EA D+F
Sbjct: 267 CYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLF 326

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M      P+    +S+L   A++  L +G Q+H  VL+ G+  ++ ++N+++ VY+K 
Sbjct: 327 LRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKC 386

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLL 397
           G+++ +  LF+ +P ++ V+WN+II  + +      A+  F  M    + P  +T+ S+L
Sbjct: 387 GEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVL 446

Query: 398 SACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
            A A L +++ G ++ S+ ++  Y     V +   ++++Y + G I++A  +  +KM  +
Sbjct: 447 RASASLAALEPGLQIHSLTIKTMYNKDTVVANS--LIDMYAKCGRINDA-RLTFDKMN-K 502

Query: 457 ASPVVWGALLYACYLHG 473
              V W A++    +HG
Sbjct: 503 RDEVSWNAMICGYSMHG 519



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 174/330 (52%), Gaps = 15/330 (4%)

Query: 46  FSSYPKSS--PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
           F   PK+   P  L+  + A      +ALD  ++  ++SV         TFAS+L+ C  
Sbjct: 295 FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSV----VPNNFTFASVLQACAS 350

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
             +++ G ++H  +    L  N  +S+ ++ +YA  G I+ + ++F+++ +R      WN
Sbjct: 351 SVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVT--WN 408

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I GY +LG+ E A+ L+  M E  ++P + T+  VL+A A L  +  G ++H   ++ 
Sbjct: 409 TIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKT 468

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
            +  D  V N+L+DMYAKCG I  AR  FD++  +D +S+N+M+ GY  HG+ +EA ++F
Sbjct: 469 MYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLF 528

Query: 284 RGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY--S 338
             M      P+    V + S  +NA LL  G Q H   + +  +   CI +   +V+   
Sbjct: 529 DMMQHTDCKPNKLTFVGVLSACSNAGLLYKG-QAHFESMSKDYDIKPCIEHYTCMVWLLG 587

Query: 339 KDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           + G+ D+A  L   +  Q  V+ W +++ A
Sbjct: 588 RLGRFDEAMKLIGEIAYQPSVMVWRALLGA 617



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 23/267 (8%)

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H   ++ G   D F  N L++ Y +   +  A  +FD +   + IS+ ++  GY  
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDLCI 329
                +A      +   G + +P   ++   +L +  L  +   +H  V + G   D  +
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
             +LI  YS  G +D A  +FD +  KD+VSW  ++  ++++    E+L  F QM   G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-------YGISPRVEHYACMVNLYGRA 439
            P++ T    L +C  L +  VG+ +    ++         GI+        ++ LY ++
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA--------LLELYAKS 285

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALL 466
           G I +A  +  E  + +  P  W  ++
Sbjct: 286 GEIIDAQRLFEEMPKTDLIP--WSLMI 310



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 24/136 (17%)

Query: 271 IHHGLLVEAFD------IFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           IHH   + A D      + + +I NG   DP+A             G  +H  +L+RG  
Sbjct: 23  IHHQQCLSALDSHSYAHMLQQIIRNG--ADPIA-------------GKHLHCHILKRGTS 67

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
            DL   N L+  Y +   L  A  LFD MPQ + +S+ ++   +S+D   H+AL +  ++
Sbjct: 68  LDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRI 127

Query: 382 ERDGVLPDHLTFVSLL 397
            ++G   +   F +LL
Sbjct: 128 FKEGHEVNPFVFTTLL 143


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 166/494 (33%), Positives = 259/494 (52%), Gaps = 79/494 (15%)

Query: 91   TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
            ++T+A  ++   + +A+  G  LH  +    L +    ++KL+  Y   G +  A ++FD
Sbjct: 803  SDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFD 862

Query: 151  QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            ++ N       W  L    A  G YE+A++ + +M++EG+ P+QF  P +LKAC  L   
Sbjct: 863  KIPNTNIRR--WIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDR 920

Query: 211  RVGEKVHLDAVRFGFGFDGF-------------------------------VLNALVDMY 239
            R GE +H   ++  F  D +                               V+NA+V  Y
Sbjct: 921  RTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGY 980

Query: 240  AKCG-------------------DIVKARTV---FDRIGNK-----------------DL 260
            A+ G                   ++V   T+   F ++G+K                 D+
Sbjct: 981  AQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDV 1040

Query: 261  ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
            +S+ S+++G++ +    E FD F+ M+  GF P  V ISS+L    N + LR G ++HG+
Sbjct: 1041 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 1100

Query: 318  VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
             +  GVE D+ + ++L+ +Y+K G + +A  LF  MP+++ V+WNS+I     H   +EA
Sbjct: 1101 AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEA 1160

Query: 375  LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            +  F QME      DHLTF ++L+AC+H G V++GE LF  M EKY I PR+EHYACMV+
Sbjct: 1161 IELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVD 1220

Query: 435  LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
            L GRAG + EAY +I + M  E    VWGALL AC  HGN+ + E AA+ LFELEP++  
Sbjct: 1221 LLGRAGKLSEAYDLI-KAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPG 1279

Query: 495  NFELLIKIYGNAGR 508
            +  LL  +Y +AGR
Sbjct: 1280 SSLLLSNLYADAGR 1293



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 235/434 (54%), Gaps = 10/434 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T++++L  C  + A++ G +LH  +          + + LL LY+  G+++EA  VF+ +
Sbjct: 216 TYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESL 275

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W + I+G+ + G+++ A+  +  M E G+EP++FTF  VL +C  +     
Sbjct: 276 RQRNIIS--WTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFID 333

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYI 271
           G   H   ++ G     FV  A++DMY+  G++ +A   F ++G     +S+N+++ GY+
Sbjct: 334 GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYV 393

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
            +  + +A + F  M+      +    S+I    S    L    Q+H  +++  VE +L 
Sbjct: 394 LNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLH 453

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           +A+SLI  Y++ G L+ A  +F  +   DVVSWNSII A+S++ +   A+    +M  +G
Sbjct: 454 VASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEG 513

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             P   TF+++LSAC+H G V+ G+  F  MV+ Y I P   H +CMV++ GRAG ++ A
Sbjct: 514 NKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENA 573

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I +K+  + +  +W  LL AC  + N+ M E  A+K+ +LEP++   +  L  +Y  
Sbjct: 574 LDFI-KKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAE 632

Query: 506 AGRLDDVERVERML 519
            GR  D E   R++
Sbjct: 633 VGRWADAENQRRLM 646



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 196/386 (50%), Gaps = 12/386 (3%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S L  C +   VE G + H  +    L  ++ + + L+ +YA  G +D A +V+D+M++ 
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            A     N LIS YA  G +  A  ++ Q+   G  P+ +T+  +L  C  +  I+ G++
Sbjct: 178 DAATC--NCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQ 235

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   V+  +  +  V NAL+ +Y+KCG + +A  VF+ +  +++IS+ + + G+  HG 
Sbjct: 236 LHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGD 295

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANS 332
             +A   F  M  +G +P+    S +LA+   ++    G   H  V+++G+   + +  +
Sbjct: 296 FKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTA 355

Query: 333 LIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLP 388
           +I +YS  G++D+A   F  M +    VSWN++I  +    K  +A+  F +M ++ V  
Sbjct: 356 IIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVAC 415

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +  T+ ++  AC+   S+    ++ S ++ K  +   +   + ++  Y + G ++ A  +
Sbjct: 416 NEFTYSNIFKACSSFPSLATTVQIHSRLI-KSNVESNLHVASSLIEAYTQCGSLENAVQV 474

Query: 449 IVEKMEFEASPVVWGALLYACYLHGN 474
             +    +A  V W +++ A   +G+
Sbjct: 475 FTQIS--DADVVSWNSIIKAYSQNGD 498



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 159/343 (46%), Gaps = 8/343 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     TF+ +L +C  +K    G   H  +    +     + + ++ +Y+  G +D
Sbjct: 308 ESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMD 367

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA + F QM  R A    WN+LI+GY    + E A+  + +M +E V  ++FT+  + KA
Sbjct: 368 EAEKQFKQM-GRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKA 426

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+    +    ++H   ++     +  V ++L++ Y +CG +  A  VF +I + D++S+
Sbjct: 427 CSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSW 486

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ-VHGWVL 319
           NS++  Y  +G   +A  + R MI  G  P      ++L+  S   L++ G +     V 
Sbjct: 487 NSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQ 546

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA--HSKDHEALI 376
              ++ +    + ++ +  + G+L+ A      +  K   S W  ++ A  ++ + +   
Sbjct: 547 DYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAE 606

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           Y  +   D    D   +V+L +  A +G     E    +M +K
Sbjct: 607 YVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQK 649



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 83   VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
            +  G    + T +SLL  C  +  + HG ++H       + K+  + S L+ +YA  G I
Sbjct: 1067 LDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYI 1126

Query: 143  DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             EA  +F  M  R      WNSLI GYA  G   +AI L+ QMEE   + D  TF  VL 
Sbjct: 1127 SEAKILFYMMPERNTVT--WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLN 1184

Query: 203  ACAGLGLIRVGEKV 216
            AC+  G++ +GE +
Sbjct: 1185 ACSHAGMVELGESL 1198



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGL 141
           V+  +     T++++ + C    ++   +++H RLI +N+   N  ++S L+  Y   G 
Sbjct: 409 VKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNV-ESNLHVASSLIEAYTQCGS 467

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           ++ A QVF Q+S+  A    WNS+I  Y++ G+   AI L  +M EEG +P   TF  VL
Sbjct: 468 LENAVQVFTQISD--ADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVL 525

Query: 202 KACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
            AC+  GL++ G++     V+ +    +    + +VD+  + G +  A     ++  K  
Sbjct: 526 SACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPT 585

Query: 261 IS 262
            S
Sbjct: 586 AS 587


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 250/447 (55%), Gaps = 11/447 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G    + T +S+L    +L+  + G ++H          +  I++ L+ +YA  G  
Sbjct: 354 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHS 413

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA  +F  +  R   +  WN++I+ YA      +AI    QM+E G  P+  TF  VL 
Sbjct: 414 TEASTIFHNLDRRNIVS--WNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLP 471

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +  G+++H   VR G   D FV N+L+DMYAKCG +  AR VF+    KD +S
Sbjct: 472 ACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVS 530

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANASLLRIGAQVHGWVL 319
           YN ++ GY      +++ ++F  M L G  PD V+   + S  AN + L+ G +VHG  L
Sbjct: 531 YNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVAL 590

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALI 376
           R  +   L ++NSL+  Y+K G++D AC LF+ +  KDV SWN++I  +    E   A+ 
Sbjct: 591 RNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 650

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M  D V  D ++++++LSAC+H G V+ G + FS M+ +  + P   HY CMV+L 
Sbjct: 651 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR-LEPTEMHYTCMVDLL 709

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++EA  +I +++       +WGALL AC ++GNV +G  AA+ LFEL+P +   +
Sbjct: 710 GRAGFVEEAAKLI-QQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYY 768

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523
            LL  IY   GR D+  ++  ++  RG
Sbjct: 769 ILLSNIYAETGRWDEANKIRELMKSRG 795



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 210/434 (48%), Gaps = 52/434 (11%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y   G +    QVF++   +   +  WNS+I+G A  G   DA+  +  M + G
Sbjct: 300 NALVDAYGKCGSVKALWQVFNETVEKNEVS--WNSIINGLACKGRCWDALNAFRMMIDAG 357

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
            +P+  T   +L     L   + G+++H  ++R G   D F+ N+L+DMYAK G   +A 
Sbjct: 358 AQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAS 417

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
           T+F  +  ++++S+N+M+  Y  + L +EA      M   G  P+ V  +++L   A   
Sbjct: 418 TIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLG 477

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G ++H   +R G+  DL ++NSLI +Y+K G L  A  +F+   +KD VS+N +I 
Sbjct: 478 FLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILII 536

Query: 367 AHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--- 420
            +S+     ++L  F +M   G  PD ++FV ++SACA+L ++K G+ +  V +  +   
Sbjct: 537 GYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYS 596

Query: 421 ------------------GISPR---------VEHYACMVNLYGRAGLIDEAYSMIVEKM 453
                              I+ R         V  +  M+  YG  G ++ A SM  E M
Sbjct: 597 HLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMF-EAM 655

Query: 454 E---FEASPVVWGALLYACYLHGNVCMG-----ETAAQKLFELEPDNEHNFELLIKIYGN 505
                +   V + A+L AC   G V  G     E  AQ+   LEP   H +  ++ + G 
Sbjct: 656 RDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR---LEPTEMH-YTCMVDLLGR 711

Query: 506 AGRLDDVERVERML 519
           AG +++  ++ + L
Sbjct: 712 AGFVEEAAKLIQQL 725



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 188/383 (49%), Gaps = 18/383 (4%)

Query: 96  SLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +LL  C +++++    ++H L I    L ++  + + L+  YA F        +F+Q   
Sbjct: 59  NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQ 118

Query: 155 RTAFAFPWNSLISGY--AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
               AF WN+LI  +  A  G + D    Y +M   GV+ D  TFP VLK C+    I  
Sbjct: 119 NCRTAFLWNTLIRAHSIAWNGTF-DGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICK 177

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH    + GF  D +V N L+ +Y  CG +  AR +FD +  +D++S+N+++     
Sbjct: 178 GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSV 237

Query: 273 HGLLVEAFDIFRGMILNG-FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLC 328
           +G   EA + +  MIL     P+ V++ S+L  ++ L    +  ++H + ++ G++  + 
Sbjct: 238 NGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVT 297

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
             N+L+  Y K G +     +F+   +K+ VSWNSII+      +  +AL  F  M   G
Sbjct: 298 TCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAG 357

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERL--FSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
             P+ +T  S+L     L   K G+ +  FS+   + G    +     ++++Y ++G   
Sbjct: 358 AQPNSVTISSILPVLVELECFKAGKEIHGFSM---RMGTETDIFIANSLIDMYAKSGHST 414

Query: 444 EAYSMIVEKMEFEASPVVWGALL 466
           EA S I   ++   + V W A++
Sbjct: 415 EA-STIFHNLD-RRNIVSWNAMI 435



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 182/384 (47%), Gaps = 39/384 (10%)

Query: 63  AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL 122
           A  +  L+A+  +IQ  E+    G      TF ++L  C +L  +  G ++H +     L
Sbjct: 439 ALNRLPLEAIRFVIQMQET----GECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGL 494

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
             +  +S+ L+ +YA  G +  A  VF+  S +   ++  N LI GY+E  +   ++ L+
Sbjct: 495 TSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSY--NILIIGYSETDDCLQSLNLF 551

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M   G +PD  +F  V+ ACA L  ++ G++VH  A+R       FV N+L+D Y KC
Sbjct: 552 SEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKC 611

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G I  A  +F++I  KD+ S+N+M+ GY   G L  A  +F  M  +    D V+  ++L
Sbjct: 612 GRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVL 671

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +  S        HG ++ RG ++     + ++    +  ++   C + D + +   V   
Sbjct: 672 SACS--------HGGLVERGWQY----FSEMLAQRLEPTEMHYTC-MVDLLGRAGFV--- 715

Query: 363 SIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                     EA    +Q+    + PD   + +LL AC   G+V++G R    + E   +
Sbjct: 716 ---------EEAAKLIQQLP---IAPDANIWGALLGACRIYGNVELGRRAAEHLFE---L 760

Query: 423 SPR-VEHYACMVNLYGRAGLIDEA 445
            P+   +Y  + N+Y   G  DEA
Sbjct: 761 KPQHCGYYILLSNIYAETGRWDEA 784


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 243/438 (55%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA  L+ C    A+ +G ++H          +  +++ L  +Y   G ++    +F++M
Sbjct: 219 TFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKM 278

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R   +  W ++I+   ++G+ E A+  + +M E  V P+++TF  V+  CA L  I  
Sbjct: 279 SMRDVVS--WTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEW 336

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H   +  G      V N+++ MYAKCG +  +  +F  +  +D++S+++++ GY  
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQ 396

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCI 329
            G + EAF++   M + G  P   A++S+L+   N ++L  G Q+H +VL  G+E    +
Sbjct: 397 GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMV 456

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            ++LI +Y K G +++A  +FD     D+VSW ++I+    H    E +  FE++ R G+
Sbjct: 457 LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGL 516

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF+ +LSAC+H G V +G   F+ M +KY ISP  EHY CM++L  RAG + +A 
Sbjct: 517 RPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAE 576

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            MI E M F    VVW  LL AC +HG+V  G   A+++ +LEP+       L  IY + 
Sbjct: 577 HMI-EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASK 635

Query: 507 GRLDDVERVERMLVDRGL 524
           G+  +   + +++  +G+
Sbjct: 636 GKWREAADIRKLMKSKGV 653



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 225/480 (46%), Gaps = 56/480 (11%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+ +     +   + C     V +G  LH       L  +  + S LL +Y   G I
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKI 167

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            E  +VF +M  R   +  W ++I+G    G  ++A+  + +M    VE D +TF   LK
Sbjct: 168 FEGRRVFHEMPMRNVVS--WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALK 225

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA  G +  G ++H  A++ GF    FV N L  MY KCG +    T+F+++  +D++S
Sbjct: 226 ACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVS 285

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVL 319
           + +++T  +  G    A   F  M  +   P+    +++++  A+L RI  G Q+H  +L
Sbjct: 286 WTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL 345

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
             G+   L + NS++ +Y+K G+L  +  +F  M ++D+VSW++II  + +     EA  
Sbjct: 346 HLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFE 405

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA----CM 432
               M  +G  P      S+LSAC ++  ++ G++L +     Y +S  +EH A     +
Sbjct: 406 LLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHA-----YVLSIGLEHTAMVLSAL 460

Query: 433 VNLYGRAGLIDEAYSMIVEKME--------------------------FEASP------- 459
           +N+Y + G I+EA S I +  E                          FE  P       
Sbjct: 461 INMYCKCGSIEEA-SRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 460 -VVWGALLYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            V +  +L AC   G V +G     A  K +++ P  EH +  +I +   AGRL D E +
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEH-YGCMIDLLCRAGRLSDAEHM 578



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 198/405 (48%), Gaps = 13/405 (3%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-E 187
           S+K L+     G +  A ++FD+MS +   +  W +LISGY    +  +A+ L+  M  E
Sbjct: 52  SNKQLKELVKTGHLGNARRMFDKMSQKDEIS--WTTLISGYVNANDSSEALLLFKNMRVE 109

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+  D F      KAC     +  GE +H  AV+ G     FV +AL+DMY K G I +
Sbjct: 110 SGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFE 169

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
            R VF  +  ++++S+ +++TG +  G   EA   F  M  +  + D    +  L   A+
Sbjct: 170 GRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACAD 229

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           +  L  G ++H   +++G +    +AN+L  +Y+K GKL+    LF+ M  +DVVSW +I
Sbjct: 230 SGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTI 289

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I       ++  A+  F +M    V P+  TF +++S CA+L  ++ GE+L ++++   G
Sbjct: 290 ITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILH-LG 348

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG-ET 480
           ++  +     ++ +Y + G +  + S+I  +M      V W  ++      G+V    E 
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSS-SVIFHEMT-RRDIVSWSTIIAGYXQGGHVSEAFEL 406

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +    E     E     ++   GN   L+  +++   ++  GLE
Sbjct: 407 LSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLE 451



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQME 382
           DL  +N  +    K G L  A  +FD M QKD +SW ++I  +   +   EAL+ F+ M 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 383 -RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+  D         AC     V  GE L    V K G+   V   + ++++Y + G 
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAV-KTGLVNSVFVGSALLDMYTKNGK 166

Query: 442 IDEA 445
           I E 
Sbjct: 167 IFEG 170


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 161/486 (33%), Positives = 263/486 (54%), Gaps = 57/486 (11%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPT------NLLRKNKGISSKLLRLYATF-------G 140
           F  +L+ C  L+ +E G +LH ++        + L+   G S K +  Y T        G
Sbjct: 163 FPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENG 222

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPR 199
            +++A ++FDQM         WNS+ISGYA+   +++A++++  +  EEG+E D FT   
Sbjct: 223 NVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGS 282

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL ACA +  +R G++VH  AV  G  ++ FV  ALV+MY+KC D+  A+  FD +  +D
Sbjct: 283 VLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERD 342

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA-------NASLLRI-- 310
             ++N +++GY     L    ++ + M  +GF+P+    + I++       N   LR+  
Sbjct: 343 TATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFT 402

Query: 311 -----------------------------GAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
                                        G QVH   +R+G E D+ I  +L+ +Y+K G
Sbjct: 403 EMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCG 462

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            +  A  +++ +   ++VS N+++ A   H    E +  F  M  +G  PDH+TF+S+LS
Sbjct: 463 SIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLS 522

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           +C H G+V+ G   F +M   Y ++P ++HY C+V+L  RAG +DEAY + V+K+  +  
Sbjct: 523 SCVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYEL-VKKIPRKPD 580

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
            V+WGALL  C + GNV +GE AA+ L ELEP+N  N+ LL  +Y  AGR  D++R  +M
Sbjct: 581 SVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQM 640

Query: 519 LVDRGL 524
           + DRG+
Sbjct: 641 IKDRGM 646



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 230/482 (47%), Gaps = 79/482 (16%)

Query: 50  PKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEH 109
           P S+P  +  +  A   T L  LD               + + T+ASLLE+C  L     
Sbjct: 35  PNSTPQSMHLSTAAH-HTHLSLLDK-------------QIDSSTYASLLESCRTLNL--- 77

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H          ++ + +KLL++Y  FG +D+A+ VF +M  R  ++  W +++S +
Sbjct: 78  GKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYS--WTAILSVH 135

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR----FGF 225
            + G +E+A++L+ +++ + +  + F FP VLK C GL ++ +G ++H   ++     G 
Sbjct: 136 VDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGS 195

Query: 226 G---FDGFVL------NALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHG 274
               F GF +      N ++  Y + G++ KA+ +FD++    KD IS+NSM++GY  + 
Sbjct: 196 ALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNL 255

Query: 275 LLVEAFDIFRGMIL-NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           L  EA  +FR +++  G + D   + S+L   A+ + LR G +VH   + RG+ W+  + 
Sbjct: 256 LFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVG 315

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKD--------------------------------- 357
            +L+ +YSK   L  A   FD + ++D                                 
Sbjct: 316 GALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFE 375

Query: 358 --VVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
             V +WN II  H ++     AL  F +M+   + PD  T   +L ACA L ++  G+++
Sbjct: 376 PNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQV 435

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            +  + + G    V   A +V++Y + G I  A  M V       + V   A+L A  +H
Sbjct: 436 HAHSIRQ-GYELDVHIGAALVDMYAKCGSIKHA--MQVYNRISNPNLVSQNAMLTAYAMH 492

Query: 473 GN 474
           G+
Sbjct: 493 GH 494


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 144/389 (37%), Positives = 235/389 (60%), Gaps = 10/389 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKA 203
           AH+VF ++  +    F WN+LI GYAE+G    A +LY +M   G VEPD  T+P ++KA
Sbjct: 72  AHKVFSKI-EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +  +R+GE +H   +R GFG   +V N+L+ +YA CGD+  A  VFD++  KDL+++
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NS++ G+  +G   EA  ++  M   G  PD   I S+L   A    L +G +VH ++++
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G+  +L  +N L+ +Y++ G++++A  LFD M  K+ VSW S+I   + +    EA+  
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

Query: 378 FEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           F+ ME  +G+LP  +TFV +L AC+H G VK G   F  M E+Y I PR+EH+ CMV+L 
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            RAG + +AY  I + M  + + V+W  LL AC +HG+  + E A  ++ +LEP++  ++
Sbjct: 371 ARAGQVKKAYEYI-KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDY 429

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  +Y +  R  DV+++ + ++  G++
Sbjct: 430 VLLSNMYASEQRWSDVQKIRKQMLRDGVK 458



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 172/330 (52%), Gaps = 17/330 (5%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E  V   +   T T+  L++    +  V  G  +H ++  +       + + LL LYA  
Sbjct: 110 EMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC 169

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A++VFD+M  +   A  WNS+I+G+AE G+ E+A+ALY +M  +G++PD FT   
Sbjct: 170 GDVASAYKVFDKMPEKDLVA--WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L ACA +G + +G++VH+  ++ G   +    N L+D+YA+CG + +A+T+FD + +K+
Sbjct: 228 LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 287

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSILANASLLRIGAQVHGWV 318
            +S+ S++ G   +G   EA ++F+ M    G  P  +    IL   S   +  +   + 
Sbjct: 288 SVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYF 347

Query: 319 LRRGVEWDL--------CIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHS 369
            R   E+ +        C+ + L    ++ G++ +A      MP Q +VV W +++ A +
Sbjct: 348 RRMREEYKIEPRIEHFGCMVDLL----ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACT 403

Query: 370 KDHEA-LIYFEQMERDGVLPDHLTFVSLLS 398
              ++ L  F +++   + P+H     LLS
Sbjct: 404 VHGDSDLAEFARIQILQLEPNHSGDYVLLS 433


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 251/437 (57%), Gaps = 9/437 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S+L++C  +  +  G  +H  I    +  +    + L+ +Y+    ID   +VF+ M 
Sbjct: 108 FPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMP 167

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +   ++  N++I+GYA+ G YEDA+ +  +M    ++PD FT   VL   +    +  G
Sbjct: 168 RKDVVSY--NTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKG 225

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H   +R G   D ++ ++LVDMYAK   I  +  VF  +  +D IS+NS++ GY+ +
Sbjct: 226 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQN 285

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   EA  +FR M+     P  VA SS++   A+ + L +G Q+HG+VLR G   ++ IA
Sbjct: 286 GRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIA 345

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HA-HSKDHEALIYFEQMERDGVL 387
           ++L+ +YSK G +  A  +FD M   D VSW +II  HA H   HEA+  FE+M+R GV 
Sbjct: 346 SALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 405

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ + FV++L+AC+H+G V      F+ M + YG++  +EHYA + +L GRAG ++EAY 
Sbjct: 406 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYD 465

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
            I  KM  E +  VW  LL +C +H N+ + E  A+K+F ++ +N   + L+  +Y + G
Sbjct: 466 FI-SKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNG 524

Query: 508 RLDDVERVERMLVDRGL 524
           R  ++ ++   +  +GL
Sbjct: 525 RWKEMAKLRLRVRKKGL 541



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 211/387 (54%), Gaps = 16/387 (4%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +L++   ++K+     +LH + I T  L      +S ++ +Y    L+ EA  VF  + +
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTS--ASIVISIYTNLKLLHEALLVFKTLES 67

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
               A  W S+I  + +   +  A+A + +M   G  PD   FP VLK+C  +  +R GE
Sbjct: 68  PPVLA--WKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE 125

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            VH   VR G   D +  NAL++MY+K   I   R VF+ +  KD++SYN+++ GY   G
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSG 185

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANAS----LLRIGAQVHGWVLRRGVEWDLCIA 330
           +  +A  + R M  +   PD   +SS+L   S    +L+ G ++HG+V+R+G++ D+ I 
Sbjct: 186 MYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLK-GKEIHGYVIRKGIDSDVYIG 244

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           +SL+ +Y+K  +++ +  +F H+ ++D +SWNS++  + ++   +EAL  F QM    V 
Sbjct: 245 SSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVR 304

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P  + F S++ ACAHL ++ +G++L   ++ + G    +   + +V++Y + G I +A  
Sbjct: 305 PGAVAFSSVIPACAHLATLHLGKQLHGYVL-RGGFGRNIFIASALVDMYSKCGNI-QAAR 362

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGN 474
            I ++M      V W A++    LHG+
Sbjct: 363 KIFDRMNLH-DEVSWTAIIMGHALHGH 388



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 172/356 (48%), Gaps = 39/356 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S+L    +   V  G ++H  +    +  +  I S L+ +YA    I+++ +VF  +
Sbjct: 208 TLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHL 267

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R + +  WNSL++GY + G Y +A+ L+ QM    V P    F  V+ ACA L  + +
Sbjct: 268 YRRDSIS--WNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHL 325

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   +R GFG + F+ +ALVDMY+KCG+I  AR +FDR+   D +S+ +++ G+  
Sbjct: 326 GKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHAL 385

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           HG   EA  +F  M   G  P+ VA  ++L   S + +  +  G+             NS
Sbjct: 386 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF------------NS 433

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392
           +  VY  + +L+    + D            ++    K  EA  +  +M    V P    
Sbjct: 434 MTKVYGLNQELEHYAAVAD------------LLGRAGKLEEAYDFISKMR---VEPTGSV 478

Query: 393 FVSLLSACAHLGSV----KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           + +LLS+C+   ++    KV E++F++  E  G       Y  M N+Y   G   E
Sbjct: 479 WSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGA------YVLMCNMYASNGRWKE 528


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 251/443 (56%), Gaps = 9/443 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ I     + + +   C + K    G ++H L   +    +  +++ +L LY     +
Sbjct: 343 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL 402

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA+ +F  M  + + +  WN++I+   + G Y+D I  + +M   G++PD FT+  VLK
Sbjct: 403 MEAYLIFQGMKQKDSVS--WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLK 460

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  +  G  VH   ++ G G D FV + +VDMY KCG I +A+ + DRIG + ++S
Sbjct: 461 ACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS 520

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N++L+G+  +    EA   F  M+  G  PD    +++L   AN + + +G Q+HG ++
Sbjct: 521 WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQII 580

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           ++ +  D  I+++L+ +Y+K G +  +  +F+ + ++D VSWN++I     H    EAL 
Sbjct: 581 KQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALR 640

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+M+++ V+P+H TFV++L AC+H+G    G R F +M   Y + P++EH+ACMV++ 
Sbjct: 641 MFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDIL 700

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+    EA   I   M F+A  V+W  LL  C +  +V + E AA  +  L+PD+   +
Sbjct: 701 GRSKGPQEAVKFI-NSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVY 759

Query: 497 ELLIKIYGNAGRLDDVERVERML 519
            LL  +Y  +G+  DV R  R+L
Sbjct: 760 ILLSNVYAESGKWADVSRTRRLL 782



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 196/371 (52%), Gaps = 9/371 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G++    TFA LL++C  L+ +  G+++H L     L  +    S L+ +Y     +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F  M  R   +  W + I+G  +  +Y   + L+ +M+  G+   Q ++    ++
Sbjct: 202 DALCFFYGMPERNWVS--WGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +  G ++H  A++  F  D  V  A+VD+YAK   +  AR  F  + N  + + 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N+M+ G +  GL +EA  +F+ MI +    D V++S + +  +  +    G QVH   ++
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G + D+C+ N+++ +Y K   L +A  +F  M QKD VSWN+II A  ++    + +++
Sbjct: 380 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 439

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M R G+ PD  T+ S+L ACA L S++ G  +   ++ K G+       + +V++Y 
Sbjct: 440 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI-KSGLGSDAFVASTVVDMYC 498

Query: 438 RAGLIDEAYSM 448
           + G+IDEA  +
Sbjct: 499 KCGIIDEAQKL 509



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 218/438 (49%), Gaps = 22/438 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   ++AS   +C  +  +  G +LH     N    ++ + + ++ +YA    + +A
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDA 304

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F  + N T      N+++ G    G   +A+ L+  M    +  D  +   V  ACA
Sbjct: 305 RRAFFGLPNHTVETS--NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                  G++VH  A++ GF  D  V NA++D+Y KC  +++A  +F  +  KD +S+N+
Sbjct: 363 ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 422

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRG 322
           ++     +G   +    F  M+  G  PD     S+L   + LR    G  VH  V++ G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  +A++++ +Y K G +D+A  L D +  + VVSWN+I+   S   +  EA  +F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYG 437
           +M   G+ PDH TF ++L  CA+L ++++G+++   ++++  +    + Y  + +V++Y 
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYA 599

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NE 493
           + G + ++  ++ EK+E +   V W A++    LHG   +G  A +    ++ +    N 
Sbjct: 600 KCGDMPDSL-LVFEKVE-KRDFVSWNAMICGYALHG---LGVEALRMFERMQKENVVPNH 654

Query: 494 HNFELLIKIYGNAGRLDD 511
             F  +++   + G  DD
Sbjct: 655 ATFVAVLRACSHVGLFDD 672



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I      ++ G+     T+ S+L+ C  L+++E+G+ +H  +  + L  +  ++S +
Sbjct: 434 DDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTV 493

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G+IDEA ++ D++  +   +  WN+++SG++   E E+A   + +M + G++P
Sbjct: 494 VDMYCKCGIIDEAQKLHDRIGGQQVVS--WNAILSGFSLNKESEEAQKFFSEMLDMGLKP 551

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D FTF  VL  CA L  I +G+++H   ++     D ++ + LVDMYAKCGD+  +  VF
Sbjct: 552 DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVF 611

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLR 309
           +++  +D +S+N+M+ GY  HGL VEA  +F  M      P+     ++L   S   L  
Sbjct: 612 EKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFD 671

Query: 310 IGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
            G +  H       +E  L     ++ +  +     +A    + MP Q D V W +++
Sbjct: 672 DGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLL 729



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 11/358 (3%)

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           R++    + +L  Y+  G I  A  +FD M +    +  WN+L+SGY + G +++++ L+
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVS--WNALVSGYCQRGMFQESVDLF 137

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M   GV PD+ TF  +LK+C+ L  + +G +VH  AV+ G   D    +ALVDMY KC
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF---DPDPVAIS 299
             +  A   F  +  ++ +S+ + + G + +   V   ++F  M   G     P   +  
Sbjct: 198 RSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 257

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  S L  G Q+H   ++     D  +  +++ VY+K   L  A   F  +P   V 
Sbjct: 258 RSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVE 317

Query: 360 SWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           + N+++    +     EA+  F+ M R  +  D ++   + SACA       G+++  + 
Sbjct: 318 TSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLA 377

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           + K G    +     +++LYG+   + EAY +I + M+ +   V W A++ A   +G+
Sbjct: 378 I-KSGFDVDICVNNAVLDLYGKCKALMEAY-LIFQGMK-QKDSVSWNAIIAALEQNGH 432



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 40/301 (13%)

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLG--LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           Q +   V P + TF RV ++CA  G   +  G   H   V  GF  + FV N L+ MYA+
Sbjct: 5   QQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYAR 64

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLT-------------------------------GY 270
           C     AR VFD +  +D +S+N+MLT                               GY
Sbjct: 65  CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGY 124

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDL 327
              G+  E+ D+F  M   G  PD    + +L + S L    +G QVH   ++ G+E D+
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDV 184

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERD 384
              ++L+ +Y K   LD A   F  MP+++ VSW + I    ++ +    L  F +M+R 
Sbjct: 185 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 244

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+     ++ S   +CA +  +  G +L +  ++    S RV   A +V++Y +A  + +
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTD 303

Query: 445 A 445
           A
Sbjct: 304 A 304


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 246/449 (54%), Gaps = 14/449 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+ +   T  S+L  C Q K +  G  +HRL+    L     + + L+ +Y     +++
Sbjct: 203 DGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLED 262

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKA 203
           A +VFD   +       W ++I  Y       +AI+L  QM   G   P+  T   +L A
Sbjct: 263 ARRVFDHCKHDKDV-VSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +   +  +  H   +R G   D  V  AL+D YA+CG +   R   +R G+    ++
Sbjct: 322 CASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLER-GSWRAETW 380

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+ L+GY   G   +A ++F+ MI     PD   ++SIL   A ++ L+ G  +H ++L 
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEAL 375
            G      IA  LI VYSK G LD A  LF  +P+KDVV+W +II     H H++   A+
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHAR--TAI 498

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
           + +++M   G  P+ +T  +LL AC+H G +  G ++F  M   +G+ P  EHY+C+V++
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDM 558

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG I+EA+ +I + M FE S  VWGALL AC LH NV  GE AA++LF+L+P+N  +
Sbjct: 559 LGRAGRIEEAHRLI-QDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGS 617

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + LL  IY  A R  DV+ V RM+V+RGL
Sbjct: 618 YVLLGNIYAAADRWRDVQDVRRMMVERGL 646



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 195/407 (47%), Gaps = 28/407 (6%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L  +Y   G    AH +  QM      +F  NSL+  Y  LG + +A+A+Y  M      
Sbjct: 51  LFMVYCACGRPSSAHNLLAQMPQPPPVSFS-NSLLRSYTGLGCHREALAVYSAMRAF--- 106

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D  TFP   KACAGL L R G  VH  A+  GFG D +V NAL+ MY  CGD+  A  V
Sbjct: 107 -DHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAV 165

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           F  + N+ ++S+N+++ G + +G    A ++F  M  +G   D   + S+L   A A  L
Sbjct: 166 FGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDL 225

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHA 367
             G  VH  V  +G+   + + N+LI +Y K   L+ A  +FDH    KDVVSW ++I A
Sbjct: 226 NTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGA 285

Query: 368 H---SKDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           +    +  EA+    QM   G   P+ +T V LLSACA + S K  +   ++ + + G+ 
Sbjct: 286 YVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCI-RLGLK 344

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
             +     +++ Y R G + +   + +E+  + A    W A L    + G     E  A 
Sbjct: 345 SDIAVETALIDAYARCGKM-KLMRLTLERGSWRAE--TWNAALSGYTVSGR----EKKAI 397

Query: 484 KLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +LF+      + PD+      ++  Y  +  L + + +   L+  G 
Sbjct: 398 ELFKRMIAESVRPDSA-TMASILPAYAESADLKEGKNIHCFLLTLGF 443


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 251/443 (56%), Gaps = 9/443 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ I     + + +   C + K    G ++H L   +    +  +++ +L LY     +
Sbjct: 343 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL 402

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA+ +F  M  + + +  WN++I+   + G Y+D I  + +M   G++PD FT+  VLK
Sbjct: 403 MEAYLIFQGMKQKDSVS--WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLK 460

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  +  G  VH   ++ G G D FV + +VDMY KCG I +A+ + DRIG + ++S
Sbjct: 461 ACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS 520

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N++L+G+  +    EA   F  M+  G  PD    +++L   AN + + +G Q+HG ++
Sbjct: 521 WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQII 580

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           ++ +  D  I+++L+ +Y+K G +  +  +F+ + ++D VSWN++I     H    EAL 
Sbjct: 581 KQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALR 640

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+M+++ V+P+H TFV++L AC+H+G    G R F +M   Y + P++EH+ACMV++ 
Sbjct: 641 MFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDIL 700

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+    EA   I   M F+A  V+W  LL  C +  +V + E AA  +  L+PD+   +
Sbjct: 701 GRSKGPQEAVKFI-NSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVY 759

Query: 497 ELLIKIYGNAGRLDDVERVERML 519
            LL  +Y  +G+  DV R  R+L
Sbjct: 760 ILLSNVYAESGKWADVSRTRRLL 782



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 196/371 (52%), Gaps = 9/371 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G++    TFA LL++C  L+ +  G+++H L     L  +    S L+ +Y     +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F  M  R   +  W + I+G  +  +Y   + L+ +M+  G+   Q ++    ++
Sbjct: 202 DALCFFYGMPERNWVS--WGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +  G ++H  A++  F  D  V  A+VD+YAK   +  AR  F  + N  + + 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N+M+ G +  GL +EA  +F+ MI +    D V++S + +  +  +    G QVH   ++
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G + D+C+ N+++ +Y K   L +A  +F  M QKD VSWN+II A  ++    + +++
Sbjct: 380 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 439

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M R G+ PD  T+ S+L ACA L S++ G  +   ++ K G+       + +V++Y 
Sbjct: 440 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI-KSGLGSDAFVASTVVDMYC 498

Query: 438 RAGLIDEAYSM 448
           + G+IDEA  +
Sbjct: 499 KCGIIDEAQKL 509



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 218/438 (49%), Gaps = 22/438 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   ++AS   +C  +  +  G +LH     N    ++ + + ++ +YA    + +A
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDA 304

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F  + N T      N+++ G    G   +A+ L+  M    +  D  +   V  ACA
Sbjct: 305 RRAFFGLPNHTVETS--NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                  G++VH  A++ GF  D  V NA++D+Y KC  +++A  +F  +  KD +S+N+
Sbjct: 363 ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 422

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRG 322
           ++     +G   +    F  M+  G  PD     S+L   + LR    G  VH  V++ G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  +A++++ +Y K G +D+A  L D +  + VVSWN+I+   S   +  EA  +F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYG 437
           +M   G+ PDH TF ++L  CA+L ++++G+++   ++++  +    + Y  + +V++Y 
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYA 599

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NE 493
           + G + ++  ++ EK+E +   V W A++    LHG   +G  A +    ++ +    N 
Sbjct: 600 KCGDMPDSL-LVFEKVE-KRDFVSWNAMICGYALHG---LGVEALRMFERMQKENVVPNH 654

Query: 494 HNFELLIKIYGNAGRLDD 511
             F  +++   + G  DD
Sbjct: 655 ATFVAVLRACSHVGLFDD 672



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I      ++ G+     T+ S+L+ C  L+++E+G+ +H  +  + L  +  ++S +
Sbjct: 434 DDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTV 493

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G+IDEA ++ D++  +   +  WN+++SG++   E E+A   + +M + G++P
Sbjct: 494 VDMYCKCGIIDEAQKLHDRIGGQQVVS--WNAILSGFSLNKESEEAQKFFSEMLDMGLKP 551

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D FTF  VL  CA L  I +G+++H   ++     D ++ + LVDMYAKCGD+  +  VF
Sbjct: 552 DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVF 611

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLR 309
           +++  +D +S+N+M+ GY  HGL VEA  +F  M      P+     ++L   S   L  
Sbjct: 612 EKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFD 671

Query: 310 IGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
            G +  H       +E  L     ++ +  +     +A    + MP Q D V W +++
Sbjct: 672 DGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLL 729



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 11/358 (3%)

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           R++    + +L  Y+  G I  A  +FD M +    +  WN+L+SGY + G +++++ L+
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVS--WNALVSGYCQRGMFQESVDLF 137

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M   GV PD+ TF  +LK+C+ L  + +G +VH  AV+ G   D    +ALVDMY KC
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF---DPDPVAIS 299
             +  A   F  +  ++ +S+ + + G + +   V   ++F  M   G     P   +  
Sbjct: 198 RSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 257

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  S L  G Q+H   ++     D  +  +++ VY+K   L  A   F  +P   V 
Sbjct: 258 RSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVE 317

Query: 360 SWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           + N+++    +     EA+  F+ M R  +  D ++   + SACA       G+++  + 
Sbjct: 318 TSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLA 377

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           + K G    +     +++LYG+   + EAY +I + M+ +   V W A++ A   +G+
Sbjct: 378 I-KSGFDVDICVNNAVLDLYGKCKALMEAY-LIFQGMK-QKDSVSWNAIIAALEQNGH 432



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 40/301 (13%)

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLG--LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           Q +   V P + TF RV ++CA  G   +  G   H   V  GF    FV N L+ MYA+
Sbjct: 5   QQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYAR 64

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLT-------------------------------GY 270
           C     AR VFD +  +D +S+N+MLT                               GY
Sbjct: 65  CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGY 124

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDL 327
              G+  E+ D+F  M   G  PD    + +L + S L    +G QVH   ++ G+E D+
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDV 184

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERD 384
              ++L+ +Y K   LD A   F  MP+++ VSW + I    ++ +    L  F +M+R 
Sbjct: 185 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 244

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+     ++ S   +CA +  +  G +L +  ++    S RV   A +V++Y +A  + +
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTD 303

Query: 445 A 445
           A
Sbjct: 304 A 304


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 264/448 (58%), Gaps = 11/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G    + T +SLL    +L   + G ++H       +  +  +++ L+ +YA FG ++
Sbjct: 271 ERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLE 330

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF+++  R   +  WN++I+   + G   +A  L  +M+++G  P+  T   +L A
Sbjct: 331 KACAVFEKIEVRNVVS--WNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPA 388

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ +  ++ G+++H  ++R G  FD F+ NAL+DMYAKCG +  A+++FD +  KD +SY
Sbjct: 389 CSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSY 447

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
           N+++ GY       E+ ++F+ +   G + D ++    L    N S  + G ++HG ++R
Sbjct: 448 NTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVR 507

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
           R +     +AN+L+ +Y+K G LD A  +F+ + +KDV SWN++I     H +   A   
Sbjct: 508 RLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHL 567

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+ M+  GV  DH++++++LS C+H G V+ G++ FS M+ +  + P+  HYACMV+L G
Sbjct: 568 FDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ-NLEPQQMHYACMVDLLG 626

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R+G + E+  +I++ M F A+  VWGALL AC +HGN+ + + AA  LFEL+P++   + 
Sbjct: 627 RSGQLTESVEIILD-MPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYS 685

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L  +Y  AGR ++  ++  ++  R ++
Sbjct: 686 VLRNMYAEAGRWNEAHKIRTLMKSRKVQ 713



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 228/429 (53%), Gaps = 16/429 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +  D   Q L S +++G+ V   +  S++  C   +    G+ +H L+    L     + 
Sbjct: 156 KMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLG 215

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +Y  FG ++ + +VF+ M  R   +  WNS I  +   G Y D +AL+  M E G
Sbjct: 216 NALVDMYGKFGHVEASMKVFEGMPERNEVS--WNSAIGCFLNAGLYGDVLALFRGMSERG 273

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P   T   +L A   LG   +G +VH  +++     D FV N+LVDMYAK G + KA 
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKAC 333

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL-- 307
            VF++I  ++++S+N+M+   + +G   EAF +   M  +G  P+ + + ++L   S   
Sbjct: 334 AVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMA 393

Query: 308 -LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L+ G Q+H W +R G+ +DL I+N+LI +Y+K G+L  A  +FD + +KD VS+N++I 
Sbjct: 394 SLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLIL 452

Query: 367 AHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            +S+     E+L  F+Q+   G+  D ++F+  L+AC +L S K G+ +  V+V +  +S
Sbjct: 453 GYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRL-LS 511

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
                   ++ LY + G++D A S I  +++ E     W  ++    +HG +     AA 
Sbjct: 512 NHPFLANTLLGLYTKGGMLDTA-SKIFNRIK-EKDVASWNNMIMGYGMHGQI----DAAF 565

Query: 484 KLFELEPDN 492
            LF+L  D+
Sbjct: 566 HLFDLMKDH 574



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 11/320 (3%)

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV-- 212
           R   AF WNSL    +      +A+ +Y  M   GV PD  TFP  L A A         
Sbjct: 35  RLRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAK 94

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A+R G   D F  N LV  YA CG    AR VFD +  +D++S+NS+++ ++ 
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCI 329
           + +  +A      M+ +G   +  ++ S++    + +    G  VHG VL+ G++  + +
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+ +Y K G ++ +  +F+ MP+++ VSWNS I          + L  F  M   G 
Sbjct: 215 GNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGF 274

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +P  +T  SLL A   LG   +G  +    +++  +   +     +V++Y + G +++A 
Sbjct: 275 MPGSITLSSLLPALVELGYFDLGREVHGYSIKR-AMELDIFVANSLVDMYAKFGSLEKAC 333

Query: 447 SMIVEKMEFEASPVVWGALL 466
           + + EK+E   + V W A++
Sbjct: 334 A-VFEKIEVR-NVVSWNAMI 351


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 224/369 (60%), Gaps = 7/369 (1%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WNSLI G    G  EDA++ + +M    ++ D++T P VL + A + +++    VH   +
Sbjct: 9   WNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLII 68

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + GF     V NAL+DMYAK G +  A  VF ++ +KD++S+ S++TGY H+G   EA  
Sbjct: 69  KTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIK 128

Query: 282 IFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +F  M ++G  PD +A++S+L   A  +++  G Q+H  +++ G+E  L + NSL+ +Y+
Sbjct: 129 LFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYA 188

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVS 395
           K G +  A   FD+MP +DV+SW ++I  ++++     +L +++QM   G  PD++TF+ 
Sbjct: 189 KCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIG 248

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           LL AC+H G +  G   F  M + YGI P  EHYACM++L GR+G + EA  ++  +M  
Sbjct: 249 LLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLL-NQMVV 307

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
               VVW ALL AC +H  + +GE AA+ LFELEP N   + +L  +Y  AG+ +D  R+
Sbjct: 308 APDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARI 367

Query: 516 ERMLVDRGL 524
            R++  RG+
Sbjct: 368 RRLMRSRGI 376



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 19/292 (6%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           + +   T  S+L +   +K +++ I +H LI        K +++ L+ +YA  G +D A 
Sbjct: 37  MKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAI 96

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            VF +M ++   +  W SL++GY+  G YE+AI L+ +M   GV PDQ     VL ACA 
Sbjct: 97  MVFSKMVDKDVVS--WTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAE 154

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L ++  G+++H   V+ G      V N+LV MYAKCG IV A   FD +  +D+IS+ ++
Sbjct: 155 LTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTAL 214

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGA-------QVHG 316
           + GY  +G    +   +  MI  G  PD +    +L   S   LL  G        +V+G
Sbjct: 215 IVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYG 274

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHA 367
             ++ G E   C    +I +  + GKL +A  L + M    D V W +++ A
Sbjct: 275 --IKPGPEHYAC----MIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA 320



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 44/304 (14%)

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           D +S+NS++ G +  G   +A   F+ M       D   + S+L   A+  +++    VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
             +++ G E    + N+LI +Y+K GKLD A  +F  M  KDVVSW S++  +S +    
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA+  F +M   GV PD +   S+LSACA L  +  G+++ + +V K G+   +     +
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLV-KSGLESSLSVDNSL 183

Query: 433 VNLYGRAGLIDEA---------------YSMIV---------EKMEFEASPVVWG----- 463
           V +Y + G I +A                ++IV           ++F    +  G     
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDY 243

Query: 464 ----ALLYACYLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
                LL+AC  +G +  G     A  K++ ++P  EH +  +I + G +G+L + + + 
Sbjct: 244 ITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH-YACMIDLLGRSGKLAEAKGLL 302

Query: 517 RMLV 520
             +V
Sbjct: 303 NQMV 306



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 5/173 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+       AS+L  C +L  ++ G ++H  +  + L  +  + + L+ +YA  G I +
Sbjct: 136 SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVD 195

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A++ FD M  R   +  W +LI GYA+ G  + ++  Y QM   G +PD  TF  +L AC
Sbjct: 196 ANRAFDNMPTRDVIS--WTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFAC 253

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRI 255
           +  GL+  G + + +A+   +G          ++D+  + G + +A+ + +++
Sbjct: 254 SHNGLLGSG-RAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQM 305


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 251/443 (56%), Gaps = 9/443 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ I     + + +   C + K    G ++H L   +    +  +++ +L LY     +
Sbjct: 385 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL 444

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA+ +F  M  + + +  WN++I+   + G Y+D I  + +M   G++PD FT+  VLK
Sbjct: 445 MEAYLIFQGMKQKDSVS--WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLK 502

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA L  +  G  VH   ++ G G D FV + +VDMY KCG I +A+ + DRIG + ++S
Sbjct: 503 ACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS 562

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N++L+G+  +    EA   F  M+  G  PD    +++L   AN + + +G Q+HG ++
Sbjct: 563 WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQII 622

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           ++ +  D  I+++L+ +Y+K G +  +  +F+ + ++D VSWN++I     H    EAL 
Sbjct: 623 KQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALR 682

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+M+++ V+P+H TFV++L AC+H+G    G R F +M   Y + P++EH+ACMV++ 
Sbjct: 683 MFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDIL 742

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+    EA   I   M F+A  V+W  LL  C +  +V + E AA  +  L+PD+   +
Sbjct: 743 GRSKGPQEAVKFI-NSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVY 801

Query: 497 ELLIKIYGNAGRLDDVERVERML 519
            LL  +Y  +G+  DV R  R+L
Sbjct: 802 ILLSNVYAESGKWADVSRTRRLL 824



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 196/371 (52%), Gaps = 9/371 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G++    TFA LL++C  L+ +  G+++H L     L  +    S L+ +Y     +D
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F  M  R   +  W + I+G  +  +Y   + L+ +M+  G+   Q ++    ++
Sbjct: 244 DALCFFYGMPERNWVS--WGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 301

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +  G ++H  A++  F  D  V  A+VD+YAK   +  AR  F  + N  + + 
Sbjct: 302 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 361

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N+M+ G +  GL +EA  +F+ MI +    D V++S + +  +  +    G QVH   ++
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 421

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G + D+C+ N+++ +Y K   L +A  +F  M QKD VSWN+II A  ++    + +++
Sbjct: 422 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 481

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M R G+ PD  T+ S+L ACA L S++ G  +   ++ K G+       + +V++Y 
Sbjct: 482 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI-KSGLGSDAFVASTVVDMYC 540

Query: 438 RAGLIDEAYSM 448
           + G+IDEA  +
Sbjct: 541 KCGIIDEAQKL 551



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 218/438 (49%), Gaps = 22/438 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V   ++AS   +C  +  +  G +LH     N    ++ + + ++ +YA    + +A
Sbjct: 287 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDA 346

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F  + N T      N+++ G    G   +A+ L+  M    +  D  +   V  ACA
Sbjct: 347 RRAFFGLPNHTVETS--NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 404

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                  G++VH  A++ GF  D  V NA++D+Y KC  +++A  +F  +  KD +S+N+
Sbjct: 405 ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 464

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRG 322
           ++     +G   +    F  M+  G  PD     S+L   + LR    G  VH  V++ G
Sbjct: 465 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 524

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  +A++++ +Y K G +D+A  L D +  + VVSWN+I+   S   +  EA  +F 
Sbjct: 525 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 584

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYG 437
           +M   G+ PDH TF ++L  CA+L ++++G+++   ++++  +    + Y  + +V++Y 
Sbjct: 585 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYA 641

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NE 493
           + G + ++  ++ EK+E +   V W A++    LHG   +G  A +    ++ +    N 
Sbjct: 642 KCGDMPDSL-LVFEKVE-KRDFVSWNAMICGYALHG---LGVEALRMFERMQKENVVPNH 696

Query: 494 HNFELLIKIYGNAGRLDD 511
             F  +++   + G  DD
Sbjct: 697 ATFVAVLRACSHVGLFDD 714



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I      ++ G+     T+ S+L+ C  L+++E+G+ +H  +  + L  +  ++S +
Sbjct: 476 DDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTV 535

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G+IDEA ++ D++  +   +  WN+++SG++   E E+A   + +M + G++P
Sbjct: 536 VDMYCKCGIIDEAQKLHDRIGGQQVVS--WNAILSGFSLNKESEEAQKFFSEMLDMGLKP 593

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D FTF  VL  CA L  I +G+++H   ++     D ++ + LVDMYAKCGD+  +  VF
Sbjct: 594 DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVF 653

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLR 309
           +++  +D +S+N+M+ GY  HGL VEA  +F  M      P+     ++L   S   L  
Sbjct: 654 EKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFD 713

Query: 310 IGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
            G +  H       +E  L     ++ +  +     +A    + MP Q D V W +++
Sbjct: 714 DGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLL 771



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 11/358 (3%)

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           R++    + +L  Y+  G I  A  +FD M +    +  WN+L+SGY + G +++++ L+
Sbjct: 122 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVS--WNALVSGYCQRGMFQESVDLF 179

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M   GV PD+ TF  +LK+C+ L  + +G +VH  AV+ G   D    +ALVDMY KC
Sbjct: 180 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 239

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF---DPDPVAIS 299
             +  A   F  +  ++ +S+ + + G + +   V   ++F  M   G     P   +  
Sbjct: 240 RSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 299

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  S L  G Q+H   ++     D  +  +++ VY+K   L  A   F  +P   V 
Sbjct: 300 RSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVE 359

Query: 360 SWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           + N+++    +     EA+  F+ M R  +  D ++   + SACA       G+++  + 
Sbjct: 360 TSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLA 419

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           + K G    +     +++LYG+   + EAY +I + M+ +   V W A++ A   +G+
Sbjct: 420 I-KSGFDVDICVNNAVLDLYGKCKALMEAY-LIFQGMK-QKDSVSWNAIIAALEQNGH 474



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 40/301 (13%)

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLG--LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           Q +   V P + TF RV ++CA  G   +  G   H   V  GF    FV N L+ MYA+
Sbjct: 47  QQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYAR 106

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLT-------------------------------GY 270
           C     AR VFD +  +D +S+N+MLT                               GY
Sbjct: 107 CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGY 166

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDL 327
              G+  E+ D+F  M   G  PD    + +L + S L    +G QVH   ++ G+E D+
Sbjct: 167 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDV 226

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERD 384
              ++L+ +Y K   LD A   F  MP+++ VSW + I    ++ +    L  F +M+R 
Sbjct: 227 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 286

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+     ++ S   +CA +  +  G +L +  ++    S RV   A +V++Y +A  + +
Sbjct: 287 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTD 345

Query: 445 A 445
           A
Sbjct: 346 A 346


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 246/449 (54%), Gaps = 14/449 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+ +   T  S+L  C Q K +  G  +HRL+    L     + + L+ +Y     +++
Sbjct: 203 DGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLED 262

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKA 203
           A +VFD   +       W ++I  Y       +AI+L  QM   G   P+  T   +L A
Sbjct: 263 ARRVFDHCKHDKDV-VSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +   +  +  H   +R G   D  V  AL+D YA+CG +   R   +R G+    ++
Sbjct: 322 CASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLER-GSWRAETW 380

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+ L+GY   G   +A ++F+ MI     PD   ++SIL   A ++ L+ G  +H ++L 
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEAL 375
            G      IA  LI VYSK G LD A  LF  +P+KDVV+W +II     H H++   A+
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHAR--TAI 498

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
           + +++M   G  P+ +T  +LL AC+H G +  G ++F  M   +G+ P  EHY+C+V++
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDM 558

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG I+EA+ +I + M FE S  VWGALL AC LH NV  GE AA++LF+L+P+N  +
Sbjct: 559 LGRAGRIEEAHRLI-QDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGS 617

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + LL  IY  A R  DV+ V RM+V+RGL
Sbjct: 618 YVLLGNIYAAADRWRDVQDVRRMMVERGL 646



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 195/407 (47%), Gaps = 28/407 (6%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L  +Y   G    AH +  QM      +F  NSL+  Y  LG + +A+A+Y  M      
Sbjct: 51  LFMVYCACGRPSSAHNLLAQMPQPPPVSFS-NSLLRSYTGLGCHREALAVYSAMRAF--- 106

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D  TFP   KACAGL L R G  VH  A+  GFG D +V NAL+ MY  CGD+  A  V
Sbjct: 107 -DHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAV 165

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           F  + N+ ++S+N+++ G + +G    A ++F  M  +G   D   + S+L   A A  L
Sbjct: 166 FGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDL 225

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHA 367
             G  VH  V  +G+   + + N+LI +Y K   L+ A  +FDH    KDVVSW ++I A
Sbjct: 226 NTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGA 285

Query: 368 H---SKDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           +    +  EA+    QM   G   P+ +T V LLSACA + S K  +   ++ + + G+ 
Sbjct: 286 YVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCI-RLGLK 344

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
             +     +++ Y R G + +   + +E+  + A    W A L    + G     E  A 
Sbjct: 345 SDIAVETALIDAYARCGKM-KLMRLTLERGSWRAE--TWNAALSGYTVSGR----EKKAI 397

Query: 484 KLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +LF+      + PD+      ++  Y  +  L + + +   L+  G 
Sbjct: 398 ELFKRMIAESVRPDSA-TMASILPAYAESADLKEGKNIHCFLLTLGF 443


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 230/404 (56%), Gaps = 9/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           IS+ L  +Y+  G ++ A  +FD M  +T  +  WNS++ GY + GE E AIA++ +M E
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVS--WNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG++P   T    L ACA LG +  G+ VH    +   G D  V+N+L+ MY+KC  +  
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LAN 304
           A  +F+ +  +  +S+N+M+ GY  +G + EA + F  M   G  PD   + S+   LA 
Sbjct: 403 ASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAE 462

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S+ R    +HG ++R  ++ ++ +  +L+ +YSK G +  A  LFD +  + V++WN++
Sbjct: 463 LSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAM 522

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H     AL  F++M++  V P+ +T++S++SAC+H G V  G R F  M + YG
Sbjct: 523 IDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYG 582

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P ++HY  MV+L GRAG I EA+  I E M       V+GA+L AC +H N+ +GE A
Sbjct: 583 LEPSMDHYGAMVDLLGRAGRIKEAWDFI-ENMPISPGITVYGAMLGACKIHKNIEVGEKA 641

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A+KLFEL PD      LL  IY +  +   V  V + +  +GL+
Sbjct: 642 AKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 245/479 (51%), Gaps = 55/479 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F  LL+ C     ++ G ++H  + TN    N    + ++ +YA    ID+A+++FD+M
Sbjct: 149 NFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++I+G+++ G  + A+ L  +M++EG  PD  T   VL A A +GL+ V
Sbjct: 209 PERDLVS--WNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMV 266

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H  A+R GF     +  AL DMY+KCG +  AR +FD +  K ++S+NSM+ GY+ 
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   +A  +F  M+  G DP  V I   L   A+   L  G  VH +V +  +  D+ +
Sbjct: 327 NGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISV 386

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            NSLI +YSK  ++D A  +F+++  +  VSWN++I  ++++    EAL  F +M+  G+
Sbjct: 387 MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM 446

Query: 387 LPDHLTFVSLLSACAHL-----------------------------------GSVKVGER 411
            PD  T VS++ A A L                                   G++ +  +
Sbjct: 447 KPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARK 506

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYAC 469
           LF ++ +++ I+     +  M++ YG  GL   A  +   ++K   E + + + +++ AC
Sbjct: 507 LFDMISDRHVIT-----WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561

Query: 470 YLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
              G V  G     + ++ + LEP  +H +  ++ + G AGR+ +  + +E M +  G+
Sbjct: 562 SHSGLVDEGLRHFKSMKQDYGLEPSMDH-YGAMVDLLGRAGRIKEAWDFIENMPISPGI 619



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 216/412 (52%), Gaps = 28/412 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIP---TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           A LLE C  +K      +LH++IP    N L       +KL+ L++ +G I+EA +VF+ 
Sbjct: 53  AVLLELCTSMK------ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEP 106

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + ++      +++++ GYA+    E A+A   +M  + V+P  + F  +LK C     ++
Sbjct: 107 IDDK--LDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLK 164

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H   +   F  + F +  +V+MYAKC  I  A  +FDR+  +DL+S+N+++ G+ 
Sbjct: 165 RGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   +A ++   M   G  PD + + ++L   A+  LL +G  +HG+ +R G    + 
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           I+ +L  +YSK G ++ A  +FD M QK VVSWNS++  + ++ E   A+  FE+M  +G
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P  +T +  L ACA LG ++ G +     V++  +   +     ++++Y +   +D A
Sbjct: 345 IDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNV-----CMGETAAQKLFELEPDN 492
            S I   +    + V W A++     +G V     C  E    K   ++PD+
Sbjct: 404 -SDIFNNLNGR-THVSWNAMILGYAQNGRVSEALNCFSE---MKSLGMKPDS 450



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I   E  ++ GI     T    L  C  L  +E G  +H+ +    L  +  + + L+ +
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y+    +D A  +F+ ++ RT  +  WN++I GYA+ G   +A+  + +M+  G++PD F
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVS--WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   V+ A A L + R  + +H   +R     + FV  ALVDMY+KCG I  AR +FD I
Sbjct: 452 TMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMI 511

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGA 312
            ++ +I++N+M+ GY  HGL   A D+F  M     +P+ +   S+++  S   L+  G 
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 313 QVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           + H   +++  G+E  +    +++ +  + G++ +A    ++MP
Sbjct: 572 R-HFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMP 614


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 247/439 (56%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SLL        +++G  +H  +       +  +S+ L+ +Y   G + +  ++++ M
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R   +  WN+ +SG  + G Y+  + +++ M EEG  P+ +TF  +L +C+ L  +  
Sbjct: 477 VDRDLIS--WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHY 534

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH   ++     + FV  AL+DMYAKC  +  A   F+R+  +DL ++  ++T Y  
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
                +A + FR M   G  P+   ++  L+  S L     G Q+H  V + G   D+ +
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            ++L+ +Y+K G +++A  LF+ + ++D ++WN+II  ++++   ++AL  F  M  +G+
Sbjct: 655 GSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGI 714

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF  +LSAC+H G V+ G+  F+ M   +GISP V+H ACMV++ GR G  DE  
Sbjct: 715 SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELE 774

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I +KM+   + ++W  +L A  +H N+ +GE AA KLFEL+P+ E ++ LL  I+   
Sbjct: 775 DFI-QKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATE 833

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR DDV+RV  ++  +G++
Sbjct: 834 GRWDDVKRVRSLMSSKGVK 852



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 200/394 (50%), Gaps = 21/394 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L+ C   K ++ G  +H LI       N+ I   L+ +Y+  GL  +A  VF  +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    W++LI+   + G+ E++I L+  M      P+Q+T   +L A    G ++ 
Sbjct: 376 KKPDIVV--WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQY 433

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H    ++GF  D  V NALV MY K G +     +++ + ++DLIS+N+ L+G   
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
            G+      IF  M+  GF P+     SIL + S L     G QVH  +++  ++ +  +
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
             +LI +Y+K   L+ A   F+ +  +D+ +W  II  +++ ++   AL YF QM+++GV
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+  T    LS C+ L S++ G++L S MV K G    +   + +V++Y + G ++EA 
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHS-MVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 447 SMIVEKMEFEA----SPVVWGALL--YACYLHGN 474
           ++      FEA      + W  ++  YA    GN
Sbjct: 673 AL------FEALIRRDTIAWNTIICGYAQNGQGN 700



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 190/379 (50%), Gaps = 11/379 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           ++S+L  C   +++     +H LI  +++  +  +   L+ +YA       A  V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +R   +  W +LI G    G   D+I L+ +M+ EG+ P++FT    LKAC+    + +G
Sbjct: 175 DRDVVS--WTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H  A + G   D FV +ALVD+YAKCG+I  A  +F  +  ++ +++N +L GY   
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G +     +F  M+      +   ++++L   AN+  L+ G  +H  +++ G E +  I 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
             L+ +YSK G    A  +F  + + D+V W+++I       +  E++  F  M     L
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+  T  SLLSA  + G+++ G+ + +  V KYG    V     +V +Y + G + +  +
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHAC-VWKYGFETDVAVSNALVTMYMKNGCVHDG-T 470

Query: 448 MIVEKMEFEASPVVWGALL 466
            + E M  +   + W A L
Sbjct: 471 KLYESM-VDRDLISWNAYL 488



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 8/303 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G      TF S+L +C  L  V +G ++H  I  N L  N  + + L+ +YA    +
Sbjct: 508 LEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYL 567

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F+++S R  F   W  +I+ YA+  + E A+  + QM++EGV+P++FT    L 
Sbjct: 568 EDADVAFNRLSVRDLFT--WTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLS 625

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C+ L  +  G+++H    + G   D FV +ALVDMYAKCG + +A  +F+ +  +D I+
Sbjct: 626 GCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA 685

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           +N+++ GY  +G   +A   FR M+  G  PD V  + IL+  S   L+  G +    + 
Sbjct: 686 WNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMY 745

Query: 320 RR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEALIY 377
           R  G+   +     ++ +  + GK D+       M   ++ + W +++ A SK H  L+ 
Sbjct: 746 RDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA-SKMHNNLVL 804

Query: 378 FEQ 380
            E+
Sbjct: 805 GEK 807


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 240/437 (54%), Gaps = 11/437 (2%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI--SSKLLRLYATFGLIDEAHQVFDQMS 153
           S+     +L  ++ G  +H  +  N      G+   + L+ +Y     +  A +VFD +S
Sbjct: 230 SITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLS 289

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
             +  +  W ++I+ Y       + + L+ +M  EG+ P++ T   ++K C   G + +G
Sbjct: 290 KASIIS--WTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG 347

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           + +H   +R GF     +  A +DMY KCGD+  AR+VFD   +KDL+ +++M++ Y  +
Sbjct: 348 KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN 407

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
             + EAFDIF  M   G  P+   + S+L   A A  L +G  +H ++ ++G++ D+ + 
Sbjct: 408 NCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILK 467

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
            S + +Y+  G +D A  LF     +D+  WN++I     H     AL  FE+ME  GV 
Sbjct: 468 TSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVT 527

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ +TF+  L AC+H G ++ G+RLF  MV ++G +P+VEHY CMV+L GRAGL+DEA+ 
Sbjct: 528 PNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHE 587

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
           +I + M    +  V+G+ L AC LH N+ +GE AA++   LEP       L+  IY +A 
Sbjct: 588 LI-KSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASAN 646

Query: 508 RLDDVERVERMLVDRGL 524
           R  DV  + R + D G+
Sbjct: 647 RWGDVAYIRRAMKDEGI 663



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 208/414 (50%), Gaps = 18/414 (4%)

Query: 86  GITVQTETFA--SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           G   + + F   S+L+ C  + +   G ++H  +  N    +  + + L+ +Y+  G + 
Sbjct: 117 GTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLA 176

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  +FD++ N+   +  W+++I  Y   G  ++A+ L   M    V+P +     +   
Sbjct: 177 LARLLFDKIENKDVVS--WSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHV 234

Query: 204 CAGLGLIRVGEKVHLDAVRFG-FGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A L  +++G+ +H   +R G  G  G  L  AL+DMY KC ++  AR VFD +    +I
Sbjct: 235 LAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASII 294

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+ +M+  YIH   L E   +F  M+  G  P+ + + S++     A  L +G  +H + 
Sbjct: 295 SWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFT 354

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
           LR G    L +A + I +Y K G +  A  +FD    KD++ W+++I ++++++   EA 
Sbjct: 355 LRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAF 414

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F  M   G+ P+  T VSLL  CA  GS+++G+ + S  ++K GI   +      V++
Sbjct: 415 DIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSY-IDKQGIKGDMILKTSFVDM 473

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           Y   G ID A+ +  E  + + S  +W A++    +HG+   GE A +   E+E
Sbjct: 474 YANCGDIDTAHRLFAEATDRDIS--MWNAMISGFAMHGH---GEAALELFEEME 522



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 193/375 (51%), Gaps = 22/375 (5%)

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           LI+ Y +     DA  +Y  M     E D F  P VLKAC  +    +G++VH   V+ G
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F  D FV NAL+ MY++ G +  AR +FD+I NKD++S+++M+  Y   GLL EA D+ R
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 285 GMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGV--EWDLCIANSLIVVYSK 339
            M +    P     ++I+ +LA  + L++G  +H +V+R G   +  + +  +LI +Y K
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSL 396
              L  A  +FD + +  ++SW ++I A+   +  +E +  F +M  +G+ P+ +T +SL
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSL 334

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           +  C   G++++G +L      + G +  +      +++YG+ G +  A S+      F+
Sbjct: 335 VKECGTAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFD---SFK 390

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNFELLIKIYGNAGRLD 510
           +  ++  + + + Y   N C+ E  A  +F       + P NE     L+ I   AG L+
Sbjct: 391 SKDLMMWSAMISSYAQNN-CIDE--AFDIFVHMTGCGIRP-NERTMVSLLMICAKAGSLE 446

Query: 511 DVERVERMLVDRGLE 525
             + +   +  +G++
Sbjct: 447 MGKWIHSYIDKQGIK 461



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  SLL  C +  ++E G  +H  I    ++ +  + +  + +YA  G ID A
Sbjct: 424 GIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTA 483

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H++F + ++R      WN++ISG+A  G  E A+ L+ +ME  GV P+  TF   L AC+
Sbjct: 484 HRLFAEATDRDISM--WNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACS 541

Query: 206 GLGLIRVGEKV-HLDAVRFGFGFDGFVLNALVDMYAKCG 243
             GL++ G+++ H     FGF         +VD+  + G
Sbjct: 542 HSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAG 580


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/464 (35%), Positives = 260/464 (56%), Gaps = 16/464 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QALD     L+     GI +   T  S+L  C QL  +   + +H  +  + L  +  +S
Sbjct: 299 QALDV----LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVS 354

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +YA FG +++A + F QM      +  WNS+I+ Y +  +   A   + +M+  G
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVS--WNSIIAAYEQNDDPVTAHGFFVKMQLNG 412

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKA 248
            +PD  T   +    A     +    VH   +R G+  +  V+ NA+VDMYAK G +  A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---AN 304
             VF+ I  KD+IS+N+++TGY  +GL  EA ++++ M       P+     SIL   A+
Sbjct: 473 HKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L+ G ++HG V++  +  D+ +A  LI VY K G+L  A  LF  +PQ+  V+WN+I
Sbjct: 533 VGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAI 592

Query: 365 IHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  H       + L  F +M  +GV PDH+TFVSLLSAC+H G V+ G+  F +M ++YG
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYG 651

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P ++HY CMV+L GRAG ++ AY  I + M  +    +WGALL AC +HGN+ +G+ A
Sbjct: 652 IKPSLKHYGCMVDLLGRAGYLEMAYGFI-KDMPLQPDASIWGALLGACRIHGNIELGKFA 710

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + +LFE++  N   + LL  IY N G+ + V++V  +  +RGL+
Sbjct: 711 SDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 241/449 (53%), Gaps = 31/449 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  L     G ++H        + N  +++ L+ +Y+ FG    A  +FD M
Sbjct: 220 TFPPVLKACGTLV---DGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 276

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++ISG  + G    A+ +  +M  EG++ +  T   +L  C  LG I  
Sbjct: 277 PFRDMGS--WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
              +HL  ++ G  FD FV NAL++MYAK G++  AR  F ++   D++S+NS++  Y  
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEW---D 326
           +   V A   F  M LNGF PD    V+++SI+A +   +    VHG+++RRG  W   D
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG--WLMED 452

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
           + I N+++ +Y+K G LD A  +F+ +  KDV+SWN++I  ++++    EA+  ++ ME 
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 384 -DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              ++P+  T+VS+L A AH+G+++ G R+   ++ K  +   V    C++++YG+ G +
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI-KTNLHLDVFVATCLIDVYGKCGRL 571

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNF 496
            +A S+  +    + S V W A++    +HG+         KLF       ++PD+   F
Sbjct: 572 VDAMSLFYQVP--QESSVTWNAIISCHGIHGHA----EKTLKLFGEMLDEGVKPDHV-TF 624

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L+    ++G +++ +   R++ + G++
Sbjct: 625 VSLLSACSHSGFVEEGKWCFRLMQEYGIK 653



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 182/328 (55%), Gaps = 12/328 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-ME 186
           IS++L+ LYA  G +  +   FDQ+  +  +   WNS+IS Y   G + +AI  ++Q + 
Sbjct: 153 ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYT--WNSMISAYVHNGHFHEAIGCFYQLLL 210

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              + PD +TFP VLKAC   G +  G ++H  A + GF ++ FV  +L+ MY++ G   
Sbjct: 211 VSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR++FD +  +D+ S+N+M++G I +G   +A D+   M L G   + V + SIL    
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327

Query: 307 LL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            L        +H +V++ G+E+DL ++N+LI +Y+K G L+ A   F  M   DVVSWNS
Sbjct: 328 QLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNS 387

Query: 364 IIHAHSKDHEALI---YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           II A+ ++ + +    +F +M+ +G  PD LT VSL S  A     K    +   ++ + 
Sbjct: 388 IIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG 447

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSM 448
            +   V     +V++Y + GL+D A+ +
Sbjct: 448 WLMEDVVIGNAVVDMYAKLGLLDSAHKV 475



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 7/243 (2%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL- 288
           F+   LV++YA  GD+  +R  FD+I  KD+ ++NSM++ Y+H+G   EA   F  ++L 
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           +   PD      +L     L  G ++H W  + G +W++ +A SLI +YS+ G    A  
Sbjct: 212 SEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 349 LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           LFD MP +D+ SWN++I     +    +AL   ++M  +G+  + +T VS+L  C  LG 
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           +     L  + V K+G+   +     ++N+Y + G +++A      +  F    V W ++
Sbjct: 332 ISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF--QQMFITDVVSWNSI 388

Query: 466 LYA 468
           + A
Sbjct: 389 IAA 391



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 23/224 (10%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           +H  ++  G    + I+  L+ +Y+  G +  +   FD +PQKDV +WNS+I A+  +  
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 372 -HEAL-IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
            HEA+  +++ +    + PD  TF  +L AC  L    V  R       K G    V   
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL----VDGRRIHCWAFKLGFQWNVFVA 253

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           A ++++Y R G    A S+  + M F      W A++     +GN      AAQ L  L+
Sbjct: 254 ASLIHMYSRFGFTGIARSLF-DDMPFRDMG-SWNAMISGLIQNGN------AAQALDVLD 305

Query: 490 PDN----EHNFELLIKIYGNAGRLDDVER---VERMLVDRGLEF 526
                  + NF  ++ I     +L D+     +   ++  GLEF
Sbjct: 306 EMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF 349


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 261/482 (54%), Gaps = 30/482 (6%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLI-PTNLLRKNKGISSK 131
           +  +Q L   V  G+     TFAS L  C +L+ +  G ++H  +   + L  N  ++S 
Sbjct: 242 EEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASA 301

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY-EDAIALYFQMEEE-G 189
           L+ +YA+   +  A +VFD +         WN++I GYA+ G   E+AI L+ +ME E G
Sbjct: 302 LVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAG 361

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P + T   VL ACA   +    E VH   V+     + FV NAL+DMYA+ G + +A 
Sbjct: 362 CAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAH 421

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM-----------ILNGFD------ 292
           T+F  I  +D++S+N+++TG I  GL+ EAF + R M           +L G D      
Sbjct: 422 TIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQ 481

Query: 293 ---PDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
              P+ + + ++L   ++L     G ++HG+ +R  +E DL + ++L+ +Y+K G L  A
Sbjct: 482 RCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALA 541

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAH 402
             +FD +P+++V++WN +I A   H    EAL  F++M  +G   P+ +TF++ L+AC+H
Sbjct: 542 RAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSH 601

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V  G  LF  M   YG  P    +AC+V++ GRAG +DEAY +I      E     W
Sbjct: 602 SGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAW 661

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
             +L AC LH NV +G  AA++LFELEPD   ++ LL  IY  AG  ++   V  M+  R
Sbjct: 662 STMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQR 721

Query: 523 GL 524
           G+
Sbjct: 722 GV 723



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 139/518 (26%), Positives = 232/518 (44%), Gaps = 85/518 (16%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK---N 125
           L AL  ++ D E        V + T  S+L  C  L   + G +L R      L+    +
Sbjct: 138 LDALRDMLADHE--------VSSFTLVSVLLACSHL--ADQGHRLGREAHAFALKHGFLD 187

Query: 126 KGIS----SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
           KG      + LL +YA  GL+D+A ++F            WN++IS   + G  E+A+ +
Sbjct: 188 KGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQV 247

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYA 240
            + M   GV PD  TF   L AC+ L L+ VG +VH   ++      + FV +ALVDMYA
Sbjct: 248 LYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYA 307

Query: 241 KCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLL-VEAFDIFRGMILN-GFDPDPV 296
               +  AR VFD +    + L  +N+M+ GY  HG +  EA ++F  M    G  P   
Sbjct: 308 SNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSET 367

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            ++ +L   A + +      VHG+V++R +  +  + N+L+ +Y++ G++D+A  +F  +
Sbjct: 368 TMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMI 427

Query: 354 PQKDVVSWNSIIH---------------------AHSKDHEALIYFEQMERDG--VLPDH 390
             +D+VSWN++I                      + +   E ++  +    DG   +P++
Sbjct: 428 DLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNN 487

Query: 391 LTFVSLLSACAHLGSVKVGERLF---------------SVMVEKYGIS------------ 423
           +T ++LL  CA L +   G+ +                S +V+ Y               
Sbjct: 488 ITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDR 547

Query: 424 -PR--VEHYACMVNLYGRAGLIDEAYSM---IVEKMEFEASPVVWGALLYACYLHGNVCM 477
            PR  V  +  ++  YG  GL DEA ++   +V   E   + V + A L AC   G V  
Sbjct: 548 LPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDR 607

Query: 478 GETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDV 512
           G    Q +   +  EP   +    ++ + G AGRLD+ 
Sbjct: 608 GLELFQGMKRDYGFEP-TPYLHACVVDVLGRAGRLDEA 644



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 190/400 (47%), Gaps = 32/400 (8%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           A+ L      +A+ HG  L R +   L R    +S+ LL  YA  G +D A  +F     
Sbjct: 58  AAALRDSRSTRAI-HGASLRRAL---LHRPTPAVSNALLTAYARCGDLDAALALFAATPP 113

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI--RV 212
               A  +NSLIS       +  A+     M  +  E   FT   VL AC+ L     R+
Sbjct: 114 DLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLADQGHRL 172

Query: 213 GEKVHLDAVRFGF---GFDGFVLNALVDMYAKCGDIVKARTVF--DRIGNKDLISYNSML 267
           G + H  A++ GF   G + F  NAL+ MYA+ G +  A+ +F     G  DL+++N+M+
Sbjct: 173 GREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           +  +  G   EA  +   M+  G  PD V  +S L   S   LL +G +VH +VL+   +
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLK---D 289

Query: 325 WDLC----IANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSK----DHEA 374
            DL     +A++L+ +Y+ + ++  A  +FD +P+  + +  WN++I  +++    D EA
Sbjct: 290 DDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEA 349

Query: 375 LIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           +  F +ME + G  P   T   +L ACA        E +   +V++   S R    A M 
Sbjct: 350 IELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALM- 408

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++Y R G +DEA+++    M      V W  L+  C + G
Sbjct: 409 DMYARLGRMDEAHTIFA--MIDLRDIVSWNTLITGCIVQG 446



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 157/390 (40%), Gaps = 72/390 (18%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF--DGFVLNALVDMYAKCGDIVKART 250
           D F  P  +K+ A L   R    +H  ++R          V NAL+  YA+CGD+  A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 251 VFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
           +F       +D +SYNS+++          A D  R M+ +        +S +LA + L 
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVSSFTLVSVLLACSHLA 166

Query: 309 ----RIGAQVHGWVLRRGV---EWDLCIANSLIVVYSKDGKLDQACWLF--DHMPQKDVV 359
               R+G + H + L+ G      +    N+L+ +Y++ G +D A  LF        D+V
Sbjct: 167 DQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLV 226

Query: 360 SWNSIIH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF--- 413
           +WN++I       +  EA+     M   GV PD +TF S L AC+ L  + VG  +    
Sbjct: 227 TWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFV 286

Query: 414 -------------SVMVEKYGISPRVEH-----------------YACMVNLYGRAGLID 443
                        S +V+ Y  + +V H                 +  M+  Y + G +D
Sbjct: 287 LKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD 346

Query: 444 EAYSMIVEKMEFEA----SPVVWGALLYAC----------YLHGNVCMGETAAQKLFELE 489
           E    +  +ME EA    S      +L AC           +HG V   + A+ +  +  
Sbjct: 347 EEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQ-- 404

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERML 519
                    L+ +Y   GR+D+   +  M+
Sbjct: 405 -------NALMDMYARLGRMDEAHTIFAMI 427


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 264/486 (54%), Gaps = 48/486 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL-LRKNKGISSKLLRLYATFGL 141
           V  G+     T+ S+L+ C +   ++ G ++H  I      R N  + + L+ +Y  FG 
Sbjct: 134 VHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGE 193

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV- 200
           +D A ++F+QM  R A +  WN +IS YA  G +++A  L+ +M   G E +  T+  + 
Sbjct: 194 LDAARRLFNQMPERDAVS--WNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIA 251

Query: 201 ----------------------------------LKACAGLGLIRVGEKVHLDAVRFGF- 225
                                             L AC+ +G I++G  +H  A+R  F 
Sbjct: 252 GGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFD 311

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
           GFD  V NAL+ MY++C D+  A  +F  I  K L ++NSML+GY H     EA  +FR 
Sbjct: 312 GFDN-VRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFRE 370

Query: 286 MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDG 341
           M+ +G +P+ V I+SIL   A  + L+ G + H +++RR G E  L + NSL+ +Y++ G
Sbjct: 371 MLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSG 430

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLS 398
           K+  A  +FD + ++D V++ S+I  +    E   AL  F++M +  + PD +T V++LS
Sbjct: 431 KVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLS 490

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+H G V  G  LF  M   YGI P VEH++CMV+L+GRAGL+++A   ++  M +  +
Sbjct: 491 ACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKA-KKVITSMPYRPT 549

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
             +W  L+ AC +HGN  +GE AA+KL E++P+N   + L+  ++  AGR   +  V   
Sbjct: 550 TAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTY 609

Query: 519 LVDRGL 524
           + D G+
Sbjct: 610 MRDLGV 615



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 232/502 (46%), Gaps = 83/502 (16%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           + +SLL +C  LK++  G +LH    +     +  +  KL+  Y++F L+ +AH +   +
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTI--TV 100

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           ++      PWN LIS Y   G + +A++ Y +M  +GV PD FT+P VLKAC     +  
Sbjct: 101 NSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDF 160

Query: 213 GEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           G +VH  ++A  +G  ++ +V N+LV MY K G++  AR +F+++  +D +S+N +++ Y
Sbjct: 161 GREVHESINAA-YGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNY 219

Query: 271 IHHGLLVEAFDIFRGMILNG-----------------------------------FDPDP 295
              GL  EAF++F  M L G                                    D DP
Sbjct: 220 ASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDP 279

Query: 296 VAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           VA+   L   S    +++G  +H   +R   +    + N+LI +YS+   L  A  LF  
Sbjct: 280 VAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKS 339

Query: 353 MPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           +  K + +WNS++  ++   +  EA   F +M   G+ P+++T  S+L  CA + +++ G
Sbjct: 340 IKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQG 399

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--------------YSMIVE---- 451
           +     ++ + G    +  +  +V +Y R+G +  A              Y+ ++     
Sbjct: 400 KEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGI 459

Query: 452 ---------------KMEFEASPVVWGALLYACYLHGNVCMGETAAQK---LFELEPDNE 493
                          K   +   V   A+L AC   G V  G    +K   L+ + P  E
Sbjct: 460 QGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVE 519

Query: 494 HNFELLIKIYGNAGRLDDVERV 515
           H F  ++ ++G AG L+  ++V
Sbjct: 520 H-FSCMVDLFGRAGLLNKAKKV 540



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 12/203 (5%)

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAI----SSILANASLLRI---GAQVHGWVLRRGVEWD 326
           G L++AF+ F  + L+    +  AI    SS+L + + L+    G Q+H   +  G E  
Sbjct: 16  GHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENH 75

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMER 383
           L +   L+  YS    L  A  +  +    + + WN +I ++  +    EAL  + +M  
Sbjct: 76  LVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVH 135

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            GV PD+ T+ S+L AC     +  G  +   +   YG    +  +  +V++YG+ G +D
Sbjct: 136 KGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELD 195

Query: 444 EAYSMIVEKMEFEASPVVWGALL 466
            A  +  +  E +A  V W  ++
Sbjct: 196 AARRLFNQMPERDA--VSWNGII 216


>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 252/443 (56%), Gaps = 19/443 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF--GLIDEAHQVFDQ 151
           +  LL+ C   K ++    +H  I      +N  + +KL+  YA      I++A +VFD 
Sbjct: 10  YTYLLQRCKGTKTIK---SIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDC 66

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + +R  F   WN++I GYA LG + +A+ +Y  M   GV  +++TFP VLKAC  +   +
Sbjct: 67  LPDRDVFV--WNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGK 124

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+ +H   V+ G   D FV NALV  YAKC +I  +R VFD I  KD++++NSM++GY 
Sbjct: 125 KGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYA 184

Query: 272 HHGLLVEAFDIFRGMI-LNG---FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
            +G   +A  +F  M+ + G   + PD   + +IL   A A+ ++ G  +H +V++ G+E
Sbjct: 185 INGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIE 244

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM 381
            D  + + LI +Y+  G L+ A  +FD +  K++V WN+II     H    EAL  F  +
Sbjct: 245 LDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGL 304

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+ PD + F+ LLSA +H G V  G  LF  M + YG+    EHYA +V++ GRAG 
Sbjct: 305 IDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGD-YGVEKSSEHYASVVDILGRAGF 363

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
           + EA    V+ M  +    V+GALL AC +H N+ + E  A+KLF L+PDN   + +L+K
Sbjct: 364 LHEAVEF-VKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYIILVK 422

Query: 502 IYGNAGRLDDVERVERMLVDRGL 524
           +Y +AG+ ++  R+ + L ++ +
Sbjct: 423 MYEDAGKWENAARLRKALKEKNI 445



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 200/450 (44%), Gaps = 66/450 (14%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF  +L+ C  +K  + G  +H  +  + L  +  + + L+  YA    I  
Sbjct: 101 SGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGA 160

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY---FQMEEEGV-EPDQFTFPRV 200
           + +VFD +S +      WNS+ISGYA  G  +DA+ L+    Q++ + V  PD  T   +
Sbjct: 161 SRRVFDMISEKDIVT--WNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAI 218

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L ACA    I+ G  +H   ++ G   D  + + L+ MYA CG +  AR VFDRI +K++
Sbjct: 219 LPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNI 278

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           + +N+++  Y  HG   EA  +F G+I +G  PD V    +L+  S        H  ++ 
Sbjct: 279 VVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLSAFS--------HAGMVA 330

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G+E           ++ K G         D+  +K    + S++    +    HEA+ +
Sbjct: 331 EGME-----------LFEKMG---------DYGVEKSSEHYASVVDILGRAGFLHEAVEF 370

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSV----KVGERLFSVMVEKYGISPRVEHYACMV 433
            + M    V P    + +LL AC    ++    ++ E+LF +  +  G       Y  +V
Sbjct: 371 VKNMP---VQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAG------RYIILV 421

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
            +Y  AG  + A  +     E     P+   A+   C LH             F +E D 
Sbjct: 422 KMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGCVLH------------TFGVE-DK 468

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            H F+   +I+    RLD++   E  L DR
Sbjct: 469 SHPFK--DQIFDTLERLDNIMEEEAGLFDR 496


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/494 (31%), Positives = 275/494 (55%), Gaps = 45/494 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +ALD ++ D++S    G+ + + T+ S L  C +L ++  G +LH  +  NL   +  ++
Sbjct: 253 EALDMVV-DMQS---KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA 308

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           S L+ LYA  G   EA  VF+ + +R   A  W  LISG+ + G + +++ L+ QM  E 
Sbjct: 309 SALVELYAKSGCFKEAKGVFNSLHDRNNVA--WTVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------- 242
           +  DQF    ++  C     + +G ++H   ++ G      V N+L+ MYAKC       
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 243 ------------------------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
                                   G++ KAR  FD +  K++I++N+ML  YI HG   +
Sbjct: 427 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEED 486

Query: 279 AFDIFRGMILNGF-DPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLI 334
              +++ M+   +  PD V   ++    + L   ++G Q+ G  ++ G+  D  +AN++I
Sbjct: 487 GLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVI 546

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHL 391
            +YSK G++ +A  +FD +  KD+VSWN++I  +S+     +A+  F+ + + G  PD++
Sbjct: 547 TMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYI 606

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           ++V++LS C+H G V+ G+  F +M   + ISP +EH++CMV+L GRAG + EA  +I +
Sbjct: 607 SYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLI-D 665

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            M  + +  VWGALL AC +HGN  + E AA+ +FEL+  +  ++ L+ KIY +AG+ DD
Sbjct: 666 DMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDD 725

Query: 512 VERVERMLVDRGLE 525
             ++ +++ D+G++
Sbjct: 726 SAQIRKLMRDKGIK 739



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 212/433 (48%), Gaps = 54/433 (12%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLI--PTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +E  A+L++   +  AV+   +L   I  PT   R     +S L     T+G +D A ++
Sbjct: 173 SEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCR-----NSMLAGYVKTYG-VDHALEL 226

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD M  R   +  WN ++S  ++ G   +A+ +   M+ +GV  D  T+   L ACA L 
Sbjct: 227 FDSMPERDVVS--WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 284

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R G+++H   +R     D +V +ALV++YAK G   +A+ VF+ + +++ +++  +++
Sbjct: 285 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 344

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEW 325
           G++ +G   E+ ++F  M       D  A++++++       L +G Q+H   L+ G   
Sbjct: 345 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 404

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQM- 381
            + ++NSLI +Y+K   L  A  +F  M +KD+VSW S+I A+S+     +A  +F+ M 
Sbjct: 405 AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS 464

Query: 382 -------------------ERDG------------VLPDHLTFVSLLSACAHLGSVKVGE 410
                              E DG            V PD +T+V+L   CA LG+ K+G+
Sbjct: 465 EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGD 524

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           ++    V K G+         ++ +Y + G I EA   + + +  +   V W A++    
Sbjct: 525 QIIGRTV-KVGLIIDTSVANAVITMYSKCGRILEARK-VFDFLNVK-DIVSWNAMITGYS 581

Query: 471 LHGNVCMGETAAQ 483
            HG   MG+ A +
Sbjct: 582 QHG---MGKQAIE 591



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 194/445 (43%), Gaps = 48/445 (10%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           RL+  ++   N    + +L  YA  G + +A ++F +M  R   +  WN+L+SGY +  +
Sbjct: 60  RLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVAS--WNTLMSGYFQSRQ 117

Query: 175 YEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           Y  ++  +  M   G   P+ FT    +K+C  LG   +  ++     +F    D  V  
Sbjct: 118 YLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAA 177

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI---------------------- 271
           ALVDM+ +CG +  A  +F RI    +   NSML GY+                      
Sbjct: 178 ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVS 237

Query: 272 ---------HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
                      G + EA D+   M   G   D    +S L   A  S LR G Q+H  V+
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 297

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R     D  +A++L+ +Y+K G   +A  +F+ +  ++ V+W  +I     +    E++ 
Sbjct: 298 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 357

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM  + +  D     +L+S C     + +G +L S+ ++   I   V   + ++++Y
Sbjct: 358 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS-LISMY 416

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHN 495
            +   +  A ++   +   E   V W +++ A    GNV      A++ F+ +   N   
Sbjct: 417 AKCDNLQSAEAIF--RFMNEKDIVSWTSMITAYSQVGNV----AKAREFFDGMSEKNVIT 470

Query: 496 FELLIKIYGNAGRLDDVERVERMLV 520
           +  ++  Y   G  +D  R+ ++++
Sbjct: 471 WNAMLGAYIQHGAEEDGLRMYKVML 495



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 159/390 (40%), Gaps = 84/390 (21%)

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART-VFDR 254
            F   L++C   G +     +H   V  G     F+ N L+  Y  CG +  AR  +   
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF------------- 291
           I + ++I++N ML GY   G L +A ++F  M          +++G+             
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 292 -------DPDPVAISSILANASLLRIG-----AQVHGWVLRRGVEWDLCIANSLIVVYSK 339
                  D  P A +   A  S   +G      Q+   V +   + D  +A +L+ ++ +
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 340 DGKLDQACWL-------------------------------FDHMPQKDVVSWNSIIHAH 368
            G +D A  L                               FD MP++DVVSWN ++ A 
Sbjct: 186 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           S+     EAL     M+  GV  D  T+ S L+ACA L S++ G++L + ++      P 
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PH 302

Query: 426 VEHY--ACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           ++ Y  + +V LY ++G   EA   ++ + ++     + ++ G L Y C+        + 
Sbjct: 303 IDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQM 362

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
            A+ L  L+      F L   I G   R+D
Sbjct: 363 RAE-LMTLD-----QFALATLISGCCSRMD 386


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/406 (34%), Positives = 239/406 (58%), Gaps = 8/406 (1%)

Query: 125  NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
            N+ +++  +  YA  G +  A +VF  + ++T  +  WN+LI G+A+  +   ++  + Q
Sbjct: 784  NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQ 841

Query: 185  MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
            M+  G+ PD FT   +L AC+ L  +R+G++VH   +R     D FV  +++ +Y  CG+
Sbjct: 842  MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE 901

Query: 245  IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
            +   + +FD + +K L+S+N+++TGY+ +G    A  +FR M+L G     +++  +   
Sbjct: 902  LCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 961

Query: 305  ASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
             SLL   R+G + H + L+  +E D  IA SLI +Y+K+G + Q+  +F+ + +K   SW
Sbjct: 962  CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 1021

Query: 362  NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
            N++I     H    EA+  FE+M+R G  PD LTF+ +L+AC H G +  G R    M  
Sbjct: 1022 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 1081

Query: 419  KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
             +G+ P ++HYAC++++ GRAG +D+A  ++ E+M  EA   +W +LL +C +H N+ MG
Sbjct: 1082 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 1141

Query: 479  ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            E  A KLFELEP+   N+ LL  +Y   G+ +DV +V + + +  L
Sbjct: 1142 EKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSL 1187



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 17/348 (4%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP-TNLLRKNKG 127
            + +   + D ESS    + V+ E    LL+   + K +E G K+H+L+  +  LR +  
Sbjct: 418 FRTVQEFVGDDESSSDAFLLVR-EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDV 476

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-E 186
           + ++++ +YA  G  D++  VFD +  R+   F WN++IS Y+    Y++ +  + +M  
Sbjct: 477 LCTRIITMYAMCGSPDDSRFVFDAL--RSKNLFQWNAVISSYSRNELYDEVLETFIEMIS 534

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              + PD FT+P V+KACAG+  + +G  VH   V+ G   D FV NALV  Y   G + 
Sbjct: 535 TTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 594

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNG---FDPDPVAISSIL 302
            A  +FD +  ++L+S+NSM+  +  +G   E+F +   M+  NG   F PD   + ++L
Sbjct: 595 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 654

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A    + +G  VHGW ++  ++ +L + N+L+ +YSK G +  A  +F     K+VV
Sbjct: 655 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 714

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDG--VLPDHLTFVSLLSACAH 402
           SWN+++   S +   H       QM   G  V  D +T ++ +  C H
Sbjct: 715 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 762



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 202/429 (47%), Gaps = 25/429 (5%)

Query: 79   LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            +E +          T  ++L  C + + +  G  +H       L K   +++ L+ +Y+ 
Sbjct: 635  MEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK 694

Query: 139  FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFT 196
             G I  A  +F   +N+   +  WN+++ G++  G+      +  QM   G  V+ D+ T
Sbjct: 695  CGCITNAQMIFKMNNNKNVVS--WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVT 752

Query: 197  FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
                +  C     +   +++H  +++  F ++  V NA V  YAKCG +  A+ VF  I 
Sbjct: 753  ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR 812

Query: 257  NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQ 313
            +K + S+N+++ G+        + D    M ++G  PD   + S+L+  S    LR+G +
Sbjct: 813  SKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 872

Query: 314  VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
            VHG+++R  +E DL +  S++ +Y   G+L     LFD M  K +VSWN++I  + ++  
Sbjct: 873  VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 932

Query: 372  -HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH-- 428
               AL  F QM   G+    ++ + +  AC+ L S+++G          Y +   +E   
Sbjct: 933  PDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDA 987

Query: 429  -YAC-MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
              AC ++++Y + G I ++ S +   ++ E S   W A++    +HG        A KLF
Sbjct: 988  FIACSLIDMYAKNGSITQS-SKVFNGLK-EKSTASWNAMIMGYGIHGLA----KEAIKLF 1041

Query: 487  ELEPDNEHN 495
            E      HN
Sbjct: 1042 EEMQRTGHN 1050



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 7/145 (4%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL-IYFEQM 381
           D  +   +I +Y+  G  D + ++FD +  K++  WN++I ++S++    E L  + E +
Sbjct: 474 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 533

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
               +LPDH T+  ++ ACA +  V +G  +  ++V K G+   V     +V+ YG  G 
Sbjct: 534 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVV-KTGLVEDVFVGNALVSFYGTHGF 592

Query: 442 IDEAYSMIVEKMEFEASPVVWGALL 466
           + +A  +    +  E + V W +++
Sbjct: 593 VTDALQLF--DIMPERNLVSWNSMI 615


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 247/439 (56%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SLL        +++G  +H  +       +  +S+ L+ +Y   G + +  ++++ M
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R   +  WN+ +SG  + G Y+  + +++ M EEG  P+ +TF  +L +C+ L  +  
Sbjct: 477 VDRDLIS--WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHY 534

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH   ++     + FV  AL+DMYAKC  +  A   F+R+  +DL ++  ++T Y  
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
                +A + FR M   G  P+   ++  L+  S L     G Q+H  V + G   D+ +
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            ++L+ +Y+K G +++A  LF+ + ++D ++WN+II  ++++   ++AL  F  M  +G+
Sbjct: 655 GSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGI 714

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF  +LSAC+H G V+ G+  F+ M   +GISP V+H ACMV++ GR G  DE  
Sbjct: 715 SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELE 774

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I +KM+   + ++W  +L A  +H N+ +GE AA KLFEL+P+ E ++ LL  I+   
Sbjct: 775 DFI-QKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATE 833

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR DDV+RV  ++  +G++
Sbjct: 834 GRWDDVKRVRSLMSSKGVK 852



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 200/394 (50%), Gaps = 21/394 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L+ C   K ++ G  +H LI       N+ I   L+ +Y+  GL  +A  VF  +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    W++LI+   + G+ E++I L+  M      P+Q+T   +L A    G ++ 
Sbjct: 376 KKPDIVV--WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQY 433

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H    ++GF  D  V NALV MY K G +     +++ + ++DLIS+N+ L+G   
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
            G+      IF  M+  GF P+     SIL + S L     G QVH  +++  ++ +  +
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
             +LI +Y+K   L+ A   F+ +  +D+ +W  II  +++ ++   AL YF QM+++GV
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+  T    LS C+ L S++ G++L S MV K G    +   + +V++Y + G ++EA 
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHS-MVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 447 SMIVEKMEFEA----SPVVWGALL--YACYLHGN 474
           ++      FEA      + W  ++  YA    GN
Sbjct: 673 AL------FEALIRRDTIAWNTIICGYAQNGQGN 700



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 190/379 (50%), Gaps = 11/379 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           ++S+L  C   +++     +H LI  +++  +  +   L+ +YA       A  V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +R   +  W +LI G    G   D+I L+ +M+ EG+ P++FT    LKAC+    + +G
Sbjct: 175 DRDVVS--WTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H  A + G   D FV +ALVD+YAKCG+I  A  +F  +  ++ +++N +L GY   
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G +     +F  M+      +   ++++L   AN+  L+ G  +H  +++ G E +  I 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
             L+ +YSK G    A  +F  + + D+V W+++I       +  E++  F  M     L
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+  T  SLLSA  + G+++ G+ + +  V KYG    V     +V +Y + G + +  +
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHAC-VWKYGFETDVAVSNALVTMYMKNGCVHDG-T 470

Query: 448 MIVEKMEFEASPVVWGALL 466
            + E M  +   + W A L
Sbjct: 471 KLYESM-VDRDLISWNAYL 488



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 8/303 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G      TF S+L +C  L  V +G ++H  I  N L  N  + + L+ +YA    +
Sbjct: 508 LEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYL 567

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F+++S R  F   W  +I+ YA+  + E A+  + QM++EGV+P++FT    L 
Sbjct: 568 EDADVAFNRLSVRDLFT--WTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLS 625

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C+ L  +  G+++H    + G   D FV +ALVDMYAKCG + +A  +F+ +  +D I+
Sbjct: 626 GCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA 685

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           +N+++ GY  +G   +A   FR M+  G  PD V  + IL+  S   L+  G +    + 
Sbjct: 686 WNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMY 745

Query: 320 RR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEALIY 377
           R  G+   +     ++ +  + GK D+       M   ++ + W +++ A SK H  L+ 
Sbjct: 746 RDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA-SKMHNNLVL 804

Query: 378 FEQ 380
            E+
Sbjct: 805 GEK 807


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/406 (34%), Positives = 239/406 (58%), Gaps = 8/406 (1%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N+ +++  +  YA  G +  A +VF  + ++T  +  WN+LI G+A+  +   ++  + Q
Sbjct: 179 NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQ 236

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+  G+ PD FT   +L AC+ L  +R+G++VH   +R     D FV  +++ +Y  CG+
Sbjct: 237 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE 296

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +   + +FD + +K L+S+N+++TGY+ +G    A  +FR M+L G     +++  +   
Sbjct: 297 LCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 356

Query: 305 ASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            SLL   R+G + H + L+  +E D  IA SLI +Y+K+G + Q+  +F+ + +K   SW
Sbjct: 357 CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 416

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N++I     H    EA+  FE+M+R G  PD LTF+ +L+AC H G +  G R    M  
Sbjct: 417 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 476

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
            +G+ P ++HYAC++++ GRAG +D+A  ++ E+M  EA   +W +LL +C +H N+ MG
Sbjct: 477 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 536

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           E  A KLFELEP+   N+ LL  +Y   G+ +DV +V + + +  L
Sbjct: 537 EKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSL 582



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 147/271 (54%), Gaps = 12/271 (4%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVE----PDQFTFPRVLKACAGLGLIRVGEKVH 217
           WNS+I  +++ G  E++  L  +M EE  +    PD  T   VL  CA    I +G+ VH
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 65

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
             AV+     +  + NAL+DMY+KCG I  A+ +F    NK+++S+N+M+ G+   G   
Sbjct: 66  GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 125

Query: 278 EAFDIFRGMILNGFD--PDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
             FD+ R M+  G D   D V I +   +  + S L    ++H + L++   ++  +AN+
Sbjct: 126 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANA 185

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPD 389
            +  Y+K G L  A  +F  +  K V SWN++I  H++ ++  +  +   QM+  G+LPD
Sbjct: 186 FVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPD 245

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
             T  SLLSAC+ L S+++G+ +   ++  +
Sbjct: 246 SFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 276



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 15/220 (6%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  FP   L     +       V  GI +   +   +   C  L ++  G + H     +
Sbjct: 324 QNGFPDRALGVFRQM-------VLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH 376

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
           LL  +  I+  L+ +YA  G I ++ +VF+ +  ++  +  WN++I GY   G  ++AI 
Sbjct: 377 LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS--WNAMIMGYGIHGLAKEAIK 434

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDM 238
           L+ +M+  G  PD  TF  VL AC   GLI  G + +LD ++  FG    + +   ++DM
Sbjct: 435 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLR-YLDQMKSSFGLKPNLKHYACVIDM 493

Query: 239 YAKCGDIVKA-RTVFDRIGNK-DLISYNSMLTG-YIHHGL 275
             + G + KA R V + +  + D+  + S+L+   IH  L
Sbjct: 494 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNL 533


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/406 (34%), Positives = 239/406 (58%), Gaps = 8/406 (1%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N+ +++  +  YA  G +  A +VF  + ++T  +  WN+LI G+A+  +   ++  + Q
Sbjct: 429 NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQ 486

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+  G+ PD FT   +L AC+ L  +R+G++VH   +R     D FV  +++ +Y  CG+
Sbjct: 487 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE 546

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +   + +FD + +K L+S+N+++TGY+ +G    A  +FR M+L G     +++  +   
Sbjct: 547 LCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 606

Query: 305 ASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            SLL   R+G + H + L+  +E D  IA SLI +Y+K+G + Q+  +F+ + +K   SW
Sbjct: 607 CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 666

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N++I     H    EA+  FE+M+R G  PD LTF+ +L+AC H G +  G R    M  
Sbjct: 667 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 726

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
            +G+ P ++HYAC++++ GRAG +D+A  ++ E+M  EA   +W +LL +C +H N+ MG
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 786

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           E  A KLFELEP+   N+ LL  +Y   G+ +DV +V + + +  L
Sbjct: 787 EKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSL 832



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 17/348 (4%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP-TNLLRKNKG 127
            + +   + D ESS    + V+ E    LL+   + K +E G K+H+L+  +  LR +  
Sbjct: 63  FRTVQEFVGDDESSSDAFLLVR-EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDV 121

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-E 186
           + ++++ +YA  G  D++  VFD +  R+   F WN++IS Y+    Y++ +  + +M  
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDAL--RSKNLFQWNAVISSYSRNELYDEVLETFIEMIS 179

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              + PD FT+P V+KACAG+  + +G  VH   V+ G   D FV NALV  Y   G + 
Sbjct: 180 TTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 239

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNG---FDPDPVAISSIL 302
            A  +FD +  ++L+S+NSM+  +  +G   E+F +   M+  NG   F PD   + ++L
Sbjct: 240 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A    + +G  VHGW ++  ++ +L + N+L+ +YSK G +  A  +F     K+VV
Sbjct: 300 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 359

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDG--VLPDHLTFVSLLSACAH 402
           SWN+++   S +   H       QM   G  V  D +T ++ +  C H
Sbjct: 360 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 199/415 (47%), Gaps = 25/415 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C + + +  G  +H       L K   +++ L+ +Y+  G I  A  +F   
Sbjct: 294 TLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN 353

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFTFPRVLKACAGLGLI 210
           +N+   +  WN+++ G++  G+      +  QM   G  V+ D+ T    +  C     +
Sbjct: 354 NNKNVVS--WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
              +++H  +++  F ++  V NA V  YAKCG +  A+ VF  I +K + S+N+++ G+
Sbjct: 412 PSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 471

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDL 327
                   + D    M ++G  PD   + S+L+  S    LR+G +VHG+++R  +E DL
Sbjct: 472 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 531

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            +  S++ +Y   G+L     LFD M  K +VSWN++I  + ++     AL  F QM   
Sbjct: 532 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 591

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH---YAC-MVNLYGRAG 440
           G+    ++ + +  AC+ L S+++G          Y +   +E     AC ++++Y + G
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAFIACSLIDMYAKNG 646

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            I ++ S +   ++ E S   W A++    +HG        A KLFE      HN
Sbjct: 647 SITQS-SKVFNGLK-EKSTASWNAMIMGYGIHGLA----KEAIKLFEEMQRTGHN 695



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 7/145 (4%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL-IYFEQM 381
           D  +   +I +Y+  G  D + ++FD +  K++  WN++I ++S++    E L  + E +
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
               +LPDH T+  ++ ACA +  V +G  +  ++V K G+   V     +V+ YG  G 
Sbjct: 179 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVV-KTGLVEDVFVGNALVSFYGTHGF 237

Query: 442 IDEAYSMIVEKMEFEASPVVWGALL 466
           + +A  +    +  E + V W +++
Sbjct: 238 VTDALQLF--DIMPERNLVSWNSMI 260


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 257/445 (57%), Gaps = 11/445 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +T  + T +SLL     L     G ++H       +  +  I++ L+ +YA FG +++A 
Sbjct: 310 VTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKAS 369

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            +F+ +  R   +  WN++I+  A+ G   +A +L  +M++ G  P+ FT   +L AC+ 
Sbjct: 370 AIFENIEGRNVVS--WNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSR 427

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           +  +++G+++H  ++      D FV NAL+D+YAKCG +  A+ +FDR   KD +SYN++
Sbjct: 428 VASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTL 486

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           + GY       E+  +F+ M   G + D V+    L   AN S  + G ++HG ++RR +
Sbjct: 487 IVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLL 546

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
                +ANSL+ +Y+K G L  A  +F+ + +KDV SWN++I     H +   A   F+ 
Sbjct: 547 NTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDL 606

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M+ DGV  DH++++++LSAC+H G V  G++ FS M+ +  I P+  HYACMV+L GRAG
Sbjct: 607 MKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAG 665

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            + E+   I+  M F A+  VWGALL +C +HG++ +   AA+ LFEL+P++   + LL 
Sbjct: 666 QLSESVE-IITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTLLR 724

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            +Y  +G  ++   ++ ++  R ++
Sbjct: 725 NMYSESGMWNEANEIKTLMKSRKVQ 749



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 231/436 (52%), Gaps = 22/436 (5%)

Query: 73  DSIIQDLESSV----QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           + +++D + +V    ++GI V   +  S++  C   +    G+ +H L+  + L     +
Sbjct: 191 NGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNL 250

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            + L+ +Y  FG ++ + +VF+ M  +   +  WNS +  +A  G +ED + ++  M E 
Sbjct: 251 GNALVDMYGKFGDLESSMRVFNGMQEKNEVS--WNSALGCFAHAGFHEDVLEMFRVMSEH 308

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            V P   T   +L A   LG   +G++VH  ++R     D F+ N+L+DMYAK G + KA
Sbjct: 309 EVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKA 368

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL- 307
             +F+ I  ++++S+N+M+     +G   EAF +   M  NG  P+   + ++L   S  
Sbjct: 369 SAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRV 428

Query: 308 --LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             +++G Q+H W + R +  DL ++N+LI VY+K G+L  A  +FD   +KD VS+N++I
Sbjct: 429 ASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLI 487

Query: 366 HAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YG 421
             +S+     E+L  F+QM   G+  D ++F+  LSACA+L + K G+ +  V+V +   
Sbjct: 488 VGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLN 547

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
             P + +   +++LY + G++  A S I  ++        W  ++    +HG +      
Sbjct: 548 THPFLAN--SLLDLYTKGGMLATA-SKIFNRIT-RKDVASWNTMILGYGMHGQI----DV 599

Query: 482 AQKLFELEPDNEHNFE 497
           A +LF+L  D+  +++
Sbjct: 600 AFELFDLMKDDGVDYD 615



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 183/385 (47%), Gaps = 29/385 (7%)

Query: 108 EHGIKLHRLIPTNLLRKNKGISS--------------KLLRLYATFGLIDEAHQVFDQMS 153
           EH ++LH+    +LL +    +S               LL  YA    I  A  +     
Sbjct: 6   EHVLRLHQCGGNSLLLRRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHP 65

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV- 212
            R   AF WNSL    A  G   +A+ +Y  M   GV PD  TFP  L A A   +    
Sbjct: 66  LRLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAE 125

Query: 213 ----GEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
               G ++H  A+R G    D F  N LV  YA  G    AR VFD +  +D++S+NS++
Sbjct: 126 HPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLV 185

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVE 324
           +  + +G+L +A     GM+ +G   +  ++ S++      R    G  VHG VL+ G++
Sbjct: 186 SALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLD 245

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHEALI-YFEQM 381
             + + N+L+ +Y K G L+ +  +F+ M +K+ VSWNS +   AH+  HE ++  F  M
Sbjct: 246 SVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVM 305

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
               V P  +T  SLL A   LG   +G+ +    + +  +   +     ++++Y + G 
Sbjct: 306 SEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRR-AMESDIFIANSLMDMYAKFGC 364

Query: 442 IDEAYSMIVEKMEFEASPVVWGALL 466
           +++A S I E +E   + V W A++
Sbjct: 365 LEKA-SAIFENIEGR-NVVSWNAMI 387



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 175/369 (47%), Gaps = 47/369 (12%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG    + T  +LL  C ++ +V+ G ++H       L  +  +S+ L+ +YA  G + 
Sbjct: 408 KNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLS 467

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  +FD+          +N+LI GY++     +++ L+ QM   G+E D  +F   L A
Sbjct: 468 VAQDIFDRSEKDDV---SYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSA 524

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L   + G+++H   VR       F+ N+L+D+Y K G +  A  +F+RI  KD+ S+
Sbjct: 525 CANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASW 584

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N+M+ GY  HG +  AF++F  M  +G D D V+  ++L+  S        HG ++ RG 
Sbjct: 585 NTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACS--------HGGLVDRGK 636

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
           ++     + +I    K  ++  AC + D + +   +S                  E +E 
Sbjct: 637 KY----FSQMIAQNIKPQQMHYAC-MVDLLGRAGQLS------------------ESVEI 673

Query: 384 DGVLP---DHLTFVSLLSACAHLGSVKV----GERLFSVMVEKYGISPRVEHYACMVNLY 436
              +P   +   + +LL +C   G +++     E LF +  E  G      +Y  + N+Y
Sbjct: 674 ITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSG------YYTLLRNMY 727

Query: 437 GRAGLIDEA 445
             +G+ +EA
Sbjct: 728 SESGMWNEA 736


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 248/423 (58%), Gaps = 18/423 (4%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           HG+ +H  + T+ L  N      L+ LY   G  D A  VFD M  R+  +  WN++I+G
Sbjct: 80  HGLAIHFGLVTDTLTCNI-----LINLYTKCGRNDCARLVFDIMHVRSIVS--WNTMIAG 132

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y   GE   A+ L+ +M  EG    +FT    + ACA    I   +++H  A++     +
Sbjct: 133 YTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSN 192

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            FV  A++D+YAKC  I  A  VF+++  + L++++S+  GY+ +GL  EA  +FR    
Sbjct: 193 SFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQR 252

Query: 289 NGFDPDPVAISSIL-ANASL-LRI-GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G +     +S+IL A ASL L+I G Q+H  +L+ G   +  +A SL+ VY++ G++++
Sbjct: 253 EGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEK 312

Query: 346 ACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
           A  LF +M  K+VV WN++I     HAHS   EA+I FE+M++ G+ P+ +T++S+LS C
Sbjct: 313 AYALFAYMEHKNVVIWNAMIASFSRHAHSW--EAMILFEKMQQLGIFPNEVTYLSVLSVC 370

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G V+ G   FS+++    + P V HY+CMV++ GR+G  DEA+ ++  KM FE +  
Sbjct: 371 SHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELL-NKMPFEPTAS 429

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           +WG+LL +C  + N+ +   AA++LF+LEPDN  N  LL  +Y  +G  ++V    + L 
Sbjct: 430 MWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLK 489

Query: 521 DRG 523
           D G
Sbjct: 490 DSG 492



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 150/287 (52%), Gaps = 7/287 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G  +   T +S +  C    A+    +LH +     L  N  + + +L +YA   +I 
Sbjct: 151 REGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIK 210

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF++M  RT     W+SL +GY + G +E+A+ L+   + EGVE  +FT   +L A
Sbjct: 211 DACWVFEKMPERTLV--TWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSA 268

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L L   G ++H   ++ GF  + FV  +LVD+YA+CG I KA  +F  + +K+++ +
Sbjct: 269 CASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIW 328

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV---AISSILANASLLRIGAQVHGWVLR 320
           N+M+  +  H    EA  +F  M   G  P+ V   ++ S+ ++A L+  G      ++ 
Sbjct: 329 NAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMS 388

Query: 321 -RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
            R VE ++   + ++ V  + GK D+A  L + MP +   S W S++
Sbjct: 389 DRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLL 435


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 250/447 (55%), Gaps = 11/447 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G    + T +S+L    +L+  + G ++H          +  I++ L+ +YA  G  
Sbjct: 205 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHS 264

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA  +F  +  R   +  WN++I+ YA      +AI    QM+E G  P+  TF  VL 
Sbjct: 265 TEASTIFHNLDRRNIVS--WNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLP 322

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +  G+++H   VR G   D FV N+L+DMYAKCG +  AR VF+    KD +S
Sbjct: 323 ACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVS 381

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANASLLRIGAQVHGWVL 319
           YN ++ GY      +++ ++F  M L G  PD V+   + S  AN + L+ G +VHG  L
Sbjct: 382 YNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVAL 441

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALI 376
           R  +   L ++NSL+  Y+K G++D AC LF+ +  KDV SWN++I  +    E   A+ 
Sbjct: 442 RNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 501

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M  D V  D ++++++LSAC+H G V+ G + FS M+ +  + P   HY CMV+L 
Sbjct: 502 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR-LEPTEMHYTCMVDLL 560

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++EA  +I +++       +WGALL AC ++GNV +G  AA+ LFEL+P +   +
Sbjct: 561 GRAGFVEEAAKLI-QQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYY 619

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523
            LL  IY   GR D+  ++  ++  RG
Sbjct: 620 ILLSNIYAETGRWDEANKIRELMKSRG 646



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 196/370 (52%), Gaps = 10/370 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+ +   TF  +L+ C     +  G+++H ++       +  + + LL LY   G +
Sbjct: 2   VRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFL 61

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVL 201
           ++A ++FD+M  R   +  WN++I   +  G+Y +A   YF M    V +P+  +   +L
Sbjct: 62  NDARRLFDEMPERDVVS--WNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
              A L    +  ++H  +V+ G        NALVD Y KCG +     VF+    K+ +
Sbjct: 120 PISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV 179

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWV 318
           S+NS++ G    G   +A + FR MI  G  P+ V ISSI   L      + G ++HG+ 
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
           +R G E D+ IANSLI +Y+K G   +A  +F ++ ++++VSWN++I  ++ +    EA+
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 299

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
            +  QM+  G  P+ +TF ++L ACA LG +  G+ + ++ V + G++  +     ++++
Sbjct: 300 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGV-RIGLTSDLFVSNSLIDM 358

Query: 436 YGRAGLIDEA 445
           Y + G +  A
Sbjct: 359 YAKCGCLHSA 368



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 210/434 (48%), Gaps = 52/434 (11%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y   G +    QVF++   +   +  WNS+I+G A  G   DA+  +  M + G
Sbjct: 151 NALVDAYGKCGSVKALWQVFNETVEKNEVS--WNSIINGLACKGRCWDALNAFRMMIDAG 208

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
            +P+  T   +L     L   + G+++H  ++R G   D F+ N+L+DMYAK G   +A 
Sbjct: 209 AQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAS 268

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
           T+F  +  ++++S+N+M+  Y  + L +EA      M   G  P+ V  +++L   A   
Sbjct: 269 TIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLG 328

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G ++H   +R G+  DL ++NSLI +Y+K G L  A  +F+   +KD VS+N +I 
Sbjct: 329 FLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILII 387

Query: 367 AHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--- 420
            +S+     ++L  F +M   G  PD ++FV ++SACA+L ++K G+ +  V +  +   
Sbjct: 388 GYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYS 447

Query: 421 ------------------GISPR---------VEHYACMVNLYGRAGLIDEAYSMIVEKM 453
                              I+ R         V  +  M+  YG  G ++ A SM  E M
Sbjct: 448 HLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMF-EAM 506

Query: 454 E---FEASPVVWGALLYACYLHGNVCMG-----ETAAQKLFELEPDNEHNFELLIKIYGN 505
                +   V + A+L AC   G V  G     E  AQ+   LEP   H +  ++ + G 
Sbjct: 507 RDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR---LEPTEMH-YTCMVDLLGR 562

Query: 506 AGRLDDVERVERML 519
           AG +++  ++ + L
Sbjct: 563 AGFVEEAAKLIQQL 576



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 182/384 (47%), Gaps = 39/384 (10%)

Query: 63  AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL 122
           A  +  L+A+  +IQ  E+    G      TF ++L  C +L  +  G ++H +     L
Sbjct: 290 ALNRLPLEAIRFVIQMQET----GECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGL 345

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
             +  +S+ L+ +YA  G +  A  VF+  S +   ++  N LI GY+E  +   ++ L+
Sbjct: 346 TSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSY--NILIIGYSETDDCLQSLNLF 402

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M   G +PD  +F  V+ ACA L  ++ G++VH  A+R       FV N+L+D Y KC
Sbjct: 403 SEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKC 462

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G I  A  +F++I  KD+ S+N+M+ GY   G L  A  +F  M  +    D V+  ++L
Sbjct: 463 GRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVL 522

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +  S        HG ++ RG ++     + ++    +  ++   C + D + +   V   
Sbjct: 523 SACS--------HGGLVERGWQY----FSEMLAQRLEPTEMHYTC-MVDLLGRAGFV--- 566

Query: 363 SIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                     EA    +Q+    + PD   + +LL AC   G+V++G R    + E   +
Sbjct: 567 ---------EEAAKLIQQLP---IAPDANIWGALLGACRIYGNVELGRRAAEHLFE---L 611

Query: 423 SPR-VEHYACMVNLYGRAGLIDEA 445
            P+   +Y  + N+Y   G  DEA
Sbjct: 612 KPQHCGYYILLSNIYAETGRWDEA 635



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 146/291 (50%), Gaps = 14/291 (4%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M   GV+ D  TFP VLK C+    I  G +VH    + GF  D +V N L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILA 303
           +  AR +FD +  +D++S+N+++     +G   EA + +  MIL     P+ V++ S+L 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 304 NASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
            ++ L    +  ++H + ++ G++  +   N+L+  Y K G +     +F+   +K+ VS
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVS 180

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL--FSV 415
           WNSII+      +  +AL  F  M   G  P+ +T  S+L     L   K G+ +  FS+
Sbjct: 181 WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSM 240

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              + G    +     ++++Y ++G   EA S I   ++   + V W A++
Sbjct: 241 ---RMGTETDIFIANSLIDMYAKSGHSTEA-STIFHNLD-RRNIVSWNAMI 286


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/496 (30%), Positives = 271/496 (54%), Gaps = 40/496 (8%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH------------ 114
           ++L   +  ++   S  QN + +   T   + ++C  L A++ G ++H            
Sbjct: 72  SRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSV 131

Query: 115 -------------------RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
                               LI   +L K+    + L+  Y+  G +  A ++FD+M +R
Sbjct: 132 FCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDR 191

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           +  +  WN++IS YA+ G+Y     ++ +M++E  EP++ T   VL  CA LG + +G +
Sbjct: 192 SIVS--WNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLR 249

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +         G +  V  A+++MY KCG +   R VFD +  +D++++++M+ GY  +G 
Sbjct: 250 IKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGR 309

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANS 332
             EA ++F  M      P+ V + S+L+  + L     G ++  +V  RG+  ++ +A++
Sbjct: 310 SNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASA 369

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD 389
           L+ +YSK G + +A  +FD +PQ+D V+WNS+I   + +    +A+  + +M+   V P+
Sbjct: 370 LLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPN 429

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           ++TFV L++AC H G V++G   F  M   + ISP +EH+AC+V+L+ R+G + +AY  I
Sbjct: 430 NITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFI 489

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509
             +ME E + V+WG LL A  +H NV + E A +KL ELEPDN  N+ +L  IY +AGR 
Sbjct: 490 C-RMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRW 548

Query: 510 DDVERVERMLVDRGLE 525
            +  +V +++ D+ ++
Sbjct: 549 QEALKVRKLMKDKRVQ 564



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 237/491 (48%), Gaps = 86/491 (17%)

Query: 113 LHRLIPTNLLRKNKG-ISSKLLRLYATF-------GLIDEAHQVFDQMSNRTAFAFPWNS 164
           LH  +P N L++ +  I  K L L   F         I  A QVFDQ+ +         S
Sbjct: 9   LHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVHC--S 66

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
            I+ Y+ L    +A+  +  M +  V    FT P + K+CA L  I VG++VH   +R+G
Sbjct: 67  FITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYG 126

Query: 225 FGFDGFVLNALVDMYAK-------------------------------CGDIVKARTVFD 253
           F    F  NAL++ YAK                                G+++ AR +FD
Sbjct: 127 FHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFD 186

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
           ++ ++ ++S+N+M++ Y  +G   + + IF+ M     +P+ + ++++L   A    L +
Sbjct: 187 KMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEM 246

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G ++      + +  ++ ++ +++ +Y K G +D    +FDHM ++DVV+W+++I  +++
Sbjct: 247 GLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQ 306

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           +   +EAL  FE M+   + P+ +T VS+LSACA LGSV+ GER+ S  VE  G+   V 
Sbjct: 307 NGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGS-YVESRGLISNVY 365

Query: 428 HYACMVNLYGRAGLIDEAY---------------SMI------------------VEKME 454
             + ++ +Y + G I +A                SMI                  ++++E
Sbjct: 366 VASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 425

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRL-D 510
            + + + +  L+ AC   G+V +G    + +     + P+ EH F  ++ ++  +GRL D
Sbjct: 426 VKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEH-FACIVDLFCRSGRLID 484

Query: 511 DVERVERMLVD 521
             E + RM V+
Sbjct: 485 AYEFICRMEVE 495


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 244/443 (55%), Gaps = 9/443 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++NG      +F  +L+ C +L  +  G ++H       +  +  + + L+  +++ G +
Sbjct: 119 LRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAV 178

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVL 201
           + A  VFD +         WNS+ISGY +   YE A+ +++++  +G + PD+ T    L
Sbjct: 179 EAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSAL 238

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
             C  LGL+ +G+K+H      GF  D FV ++L+DMY+KCG I  AR VFDRI +++ +
Sbjct: 239 SVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTV 298

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWV 318
            + SM+ GY    L  EA ++FR M + GF  D   I+ +L+       L  G  +H + 
Sbjct: 299 CWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYC 358

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---AL 375
            R  +E DL   N+LI +YSK G + +A  +F  + Q D+ SW+++I   + + E   AL
Sbjct: 359 ERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKAL 418

Query: 376 IYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
             F QME    + P+ +TF+ +L AC H G V  G   F+ M + Y ++P +EHY CMV+
Sbjct: 419 HLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVD 478

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRA L+ EA   I   +  +   V+W +LL+AC  HGN+ + E AA+++ ELEP    
Sbjct: 479 LLGRANLLVEAEKFI-RTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCG 537

Query: 495 NFELLIKIYGNAGRLDDVERVER 517
              LL  +Y +A R  DV+RV +
Sbjct: 538 ARVLLSNVYASASRWGDVKRVRK 560



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 191/406 (47%), Gaps = 48/406 (11%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F WN +   Y+      + IALY  M   G  PD ++FP VLKACA L L+  G ++H  
Sbjct: 93  FSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSS 152

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLV 277
            ++ G   D FV NAL+  ++ CG +  AR VFD +    +D++S+NSM++GY+      
Sbjct: 153 TLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYE 212

Query: 278 EAFDIFRGMILNG-FDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
            A  +F  ++ +G   PD V + S L+      LL +G ++HG     G   D+ + +SL
Sbjct: 213 LALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSL 272

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
           I +YSK G+++ A  +FD +P ++ V W S+I  +++     EA+  F +M+  G   D 
Sbjct: 273 IDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADA 332

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM-- 448
            T   +LSAC H G++  G R   +  E+  I   +     ++ +Y + G I +A  +  
Sbjct: 333 ATIACVLSACGHWGALAQG-RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFH 391

Query: 449 -IVEKMEFEASPVVWG-------------------------------ALLYACYLHGNVC 476
            + +   F  S V+ G                                +L AC   G V 
Sbjct: 392 GLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVD 451

Query: 477 MGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            G     A  +++ L P  EH +  ++ + G A  L + E+  R L
Sbjct: 452 KGLYYFNAMTQIYNLTPGIEH-YGCMVDLLGRANLLVEAEKFIRTL 496



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
           D   +RT+F +I   ++ S+N M   Y       E   ++  M+ NG  PD  +   +L 
Sbjct: 76  DFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLK 135

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDV 358
             A  SLL  G ++H   L+ GV  D+ + N+LI  +S  G ++ A  +FD +P   +DV
Sbjct: 136 ACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDV 195

Query: 359 VSWNSIIHAHSKDHE---ALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFS 414
           VSWNS+I  + + H    AL  F ++  DG L PD +T VS LS C  LG + +G+++  
Sbjct: 196 VSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHG 255

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +     G    V   + ++++Y + G I++A
Sbjct: 256 LFTGS-GFVLDVFVGSSLIDMYSKCGQIEDA 285


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 243/439 (55%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A  L++C ++ A++ G  +        L  ++ + S L+ +YA+ G +  A  VFD  
Sbjct: 122 TAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAA 181

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++++ Y + G++ + + ++  M E GV  D+ T   V+ AC  +G  ++
Sbjct: 182 EESGVVM--WNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKL 239

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ V       G   +  ++ AL+DMYAKCG+I KAR +FD + ++D++++++M++GY  
Sbjct: 240 GKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQ 299

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
                EA  +F  M L   +P+ V + S+L+  ++   L  G  VH +V R+ +     +
Sbjct: 300 ADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTIL 359

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +L+  Y+K G +D A   F+ MP K+  +W ++I     + +  EAL  F  M   G+
Sbjct: 360 GTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGI 419

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P  +TF+ +L AC+H   V+ G R F  M   YGI PRVEHY CMV+L GRAGL+DEAY
Sbjct: 420 EPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAY 479

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I   M  E + V+W ALL +C +H NV +GE A +++  L P +  ++ LL  IY +A
Sbjct: 480 QFI-RTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASA 538

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+  D   V + + DRG+E
Sbjct: 539 GQWKDAAMVRKEMKDRGIE 557



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 187/362 (51%), Gaps = 21/362 (5%)

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQ 184
           K   S L    A+  L+  A  +F ++  R   + P +N L+  +   G  EDA+ L+ +
Sbjct: 50  KSFHSLLEAAAASPTLLPYAVSLF-RLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIE 108

Query: 185 M--EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           M         DQ T    LK+C+ +  + VG  V   AV+ G   D FVL++L+ MYA C
Sbjct: 109 MLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASC 168

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           GD+  AR VFD      ++ +N+++  Y+ +G  +E  ++F+GM+  G   D V + S++
Sbjct: 169 GDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVV 228

Query: 303 ANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
                +   ++G  V G V   G+  +  +  +L+ +Y+K G++ +A  LFD M  +DVV
Sbjct: 229 TACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVV 288

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +W+++I  +++     EAL  F +M+   V P+ +T VS+LSACA LG+++ G+ + S  
Sbjct: 289 AWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHS-Y 347

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWGALLYACYLH 472
           V +  +S        +V+ Y + G ID+A         FE+ PV     W AL+     +
Sbjct: 348 VRRKRLSLTTILGTALVDFYAKCGCIDDAVE------AFESMPVKNSWTWTALIKGMATN 401

Query: 473 GN 474
           G 
Sbjct: 402 GR 403



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 173/383 (45%), Gaps = 38/383 (9%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +++  +  ++ G+     T  S++  C ++   + G  +   +    L +N  + + L+ 
Sbjct: 205 VVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMD 264

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA  G I +A ++FD M +R   A  W+++ISGY +  +  +A+ L+ +M+   VEP+ 
Sbjct: 265 MYAKCGEIGKARRLFDGMQSRDVVA--WSAMISGYTQADQCREALGLFSEMQLARVEPND 322

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL ACA LG +  G+ VH    R        +  ALVD YAKCG I  A   F+ 
Sbjct: 323 VTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFES 382

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           +  K+  ++ +++ G   +G   EA ++F  M   G +P  V    +L   S        
Sbjct: 383 MPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACS-------- 434

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           H  ++  G        +S+   Y    +++    + D + +  +V             EA
Sbjct: 435 HSCLVEEGRRH----FDSMARDYGIKPRVEHYGCMVDLLGRAGLVD------------EA 478

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH---YAC 431
             +   M    + P+ + + +LLS+CA   +V +GE        K  IS    H   Y  
Sbjct: 479 YQFIRTMP---IEPNAVIWRALLSSCAVHRNVGIGEEAL-----KQIISLNPSHSGDYVL 530

Query: 432 MVNLYGRAGLIDEAYSMIVEKME 454
           + N+Y  AG   +A +M+ ++M+
Sbjct: 531 LSNIYASAGQWKDA-AMVRKEMK 552


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/494 (31%), Positives = 275/494 (55%), Gaps = 45/494 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +ALD ++ D++S    G+ + + T+ S L  C +L ++  G +LH  +  NL   +  ++
Sbjct: 273 EALDMVV-DMQS---KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA 328

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           S L+ LYA  G   EA  VF+ + +R   A  W  LISG+ + G + +++ L+ QM  E 
Sbjct: 329 SALVELYAKSGCFKEAKGVFNSLHDRNNVA--WTVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------- 242
           +  DQF    ++  C     + +G ++H   ++ G      V N+L+ MYAKC       
Sbjct: 387 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446

Query: 243 ------------------------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
                                   G++ KAR  FD +  K++I++N+ML  YI HG   +
Sbjct: 447 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEED 506

Query: 279 AFDIFRGMILNGF-DPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLI 334
              +++ M+   +  PD V   ++    + L   ++G Q+ G  ++ G+  D  +AN++I
Sbjct: 507 GLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVI 566

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHL 391
            +YSK G++ +A  +FD +  KD+VSWN++I  +S+     +A+  F+ + + G  PD++
Sbjct: 567 TMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYI 626

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           ++V++LS C+H G V+ G+  F +M   + ISP +EH++CMV+L GRAG + EA  +I +
Sbjct: 627 SYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLI-D 685

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            M  + +  VWGALL AC +HGN  + E AA+ +FEL+  +  ++ L+ KIY +AG+ DD
Sbjct: 686 DMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDD 745

Query: 512 VERVERMLVDRGLE 525
             ++ +++ D+G++
Sbjct: 746 SAQIRKLMRDKGIK 759



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 212/433 (48%), Gaps = 54/433 (12%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLI--PTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +E  A+L++   +  AV+   +L   I  PT   R     +S L     T+G +D A ++
Sbjct: 193 SEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCR-----NSMLAGYVKTYG-VDHALEL 246

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD M  R   +  WN ++S  ++ G   +A+ +   M+ +GV  D  T+   L ACA L 
Sbjct: 247 FDSMPERDVVS--WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 304

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R G+++H   +R     D +V +ALV++YAK G   +A+ VF+ + +++ +++  +++
Sbjct: 305 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 364

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEW 325
           G++ +G   E+ ++F  M       D  A++++++       L +G Q+H   L+ G   
Sbjct: 365 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 424

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQM- 381
            + ++NSLI +Y+K   L  A  +F  M +KD+VSW S+I A+S+     +A  +F+ M 
Sbjct: 425 AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS 484

Query: 382 -------------------ERDG------------VLPDHLTFVSLLSACAHLGSVKVGE 410
                              E DG            V PD +T+V+L   CA LG+ K+G+
Sbjct: 485 EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGD 544

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           ++    V K G+         ++ +Y + G I EA   + + +  +   V W A++    
Sbjct: 545 QIIGRTV-KVGLIIDTSVANAVITMYSKCGRILEARK-VFDFLNVK-DIVSWNAMITGYS 601

Query: 471 LHGNVCMGETAAQ 483
            HG   MG+ A +
Sbjct: 602 QHG---MGKQAIE 611



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 194/445 (43%), Gaps = 48/445 (10%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           RL+  ++   N    + +L  YA  G + +A ++F +M  R   +  WN+L+SGY +  +
Sbjct: 80  RLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVAS--WNTLMSGYFQSRQ 137

Query: 175 YEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           Y  ++  +  M   G   P+ FT    +K+C  LG   +  ++     +F    D  V  
Sbjct: 138 YLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAA 197

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI---------------------- 271
           ALVDM+ +CG +  A  +F RI    +   NSML GY+                      
Sbjct: 198 ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVS 257

Query: 272 ---------HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
                      G + EA D+   M   G   D    +S L   A  S LR G Q+H  V+
Sbjct: 258 WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 317

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R     D  +A++L+ +Y+K G   +A  +F+ +  ++ V+W  +I     +    E++ 
Sbjct: 318 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 377

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM  + +  D     +L+S C     + +G +L S+ ++   I   V   + ++++Y
Sbjct: 378 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS-LISMY 436

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHN 495
            +   +  A ++   +   E   V W +++ A    GNV      A++ F+ +   N   
Sbjct: 437 AKCDNLQSAEAIF--RFMNEKDIVSWTSMITAYSQVGNV----AKAREFFDGMSEKNVIT 490

Query: 496 FELLIKIYGNAGRLDDVERVERMLV 520
           +  ++  Y   G  +D  R+ ++++
Sbjct: 491 WNAMLGAYIQHGAEEDGLRMYKVML 515



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 159/390 (40%), Gaps = 84/390 (21%)

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART-VFDR 254
            F   L++C   G +     +H   V  G     F+ N L+  Y  CG +  AR  +   
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF------------- 291
           I + ++I++N ML GY   G L +A ++F  M          +++G+             
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 292 -------DPDPVAISSILANASLLRIG-----AQVHGWVLRRGVEWDLCIANSLIVVYSK 339
                  D  P A +   A  S   +G      Q+   V +   + D  +A +L+ ++ +
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 340 DGKLDQACWL-------------------------------FDHMPQKDVVSWNSIIHAH 368
            G +D A  L                               FD MP++DVVSWN ++ A 
Sbjct: 206 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 265

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           S+     EAL     M+  GV  D  T+ S L+ACA L S++ G++L + ++      P 
Sbjct: 266 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PH 322

Query: 426 VEHY--ACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           ++ Y  + +V LY ++G   EA   ++ + ++     + ++ G L Y C+        + 
Sbjct: 323 IDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQM 382

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
            A+ L  L+      F L   I G   R+D
Sbjct: 383 RAE-LMTLD-----QFALATLISGCCSRMD 406


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 246/421 (58%), Gaps = 9/421 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H LI  + L     + + L+ +YA  G +  A  VF+  S+R   +  W+++I+GY
Sbjct: 239 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFE--SSRERNSITWSAMITGY 296

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+ GE + A++++ QM   G  P +FTF  VL A + LG + VG++ H   V+ GF    
Sbjct: 297 AQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQI 356

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           +V +ALVDMYAKCG I  A+  FD++   D++ + +M++G++ +G   EA  ++  M   
Sbjct: 357 YVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKE 416

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G  P    I+S L   A  + L  G Q+H  +++ G+     + ++L  +YSK G L+  
Sbjct: 417 GIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDG 476

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  +P +DV++WNSII   S++   + AL  FE+M+ +G +PD++TF+++L AC+H+
Sbjct: 477 MSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHM 536

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G   FS+M + YG++PR++HYACMV++  RAG++ EA   I E +  +    +W 
Sbjct: 537 GLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFI-ESITIDHGTCLWR 595

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            +L AC    +  +G  A ++L EL   +   + LL  IY +  + +DVERV  ++  RG
Sbjct: 596 IVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRG 655

Query: 524 L 524
           +
Sbjct: 656 V 656



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 185/340 (54%), Gaps = 14/340 (4%)

Query: 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176
           IP+ +   N  + + LL +Y   G++ +A ++FD M  R +F+  W+++++GYA     E
Sbjct: 146 IPSAV--SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFS--WSTMVAGYAAEKCSE 201

Query: 177 DAIALY-FQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
           +A  L+   +EE   E  +F    VL A +  LGL+ +GE++H   V+ G      V N+
Sbjct: 202 EAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLL-MGEQMHGLIVKDGLLDFVSVENS 260

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           LV MYAK G +  A  VF+    ++ I++++M+TGY  +G    A  +F  M   GF P 
Sbjct: 261 LVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPT 320

Query: 295 PVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                 +L  +S    L +G Q HG +++ G E  + + ++L+ +Y+K G +  A   FD
Sbjct: 321 EFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFD 380

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            + + D+V W +++  H ++    EAL  + +M+++G++P   T  S L ACA + +++ 
Sbjct: 381 QLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEP 440

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           G++L + +V KYG+       + +  +Y + G +++  S+
Sbjct: 441 GKQLHTQIV-KYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 4/245 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DS +         G T    TF  +L     L A+  G + H L+          + S L
Sbjct: 303 DSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSAL 362

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G I +A + FDQ+         W +++SG+ + GE+E+A+ LY +M++EG+ P
Sbjct: 363 VDMYAKCGCIADAKEGFDQLYEVDIVL--WTAMVSGHVQNGEHEEALTLYARMDKEGIIP 420

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
            + T    L+ACAG+  +  G+++H   V++G G    V +AL  MY+KCG++    +VF
Sbjct: 421 SKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVF 480

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
            RI ++D+I++NS+++G+  +G    A D+F  M + G  PD +   +IL   S   +G 
Sbjct: 481 RRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACS--HMGL 538

Query: 313 QVHGW 317
              GW
Sbjct: 539 VDRGW 543



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 51/221 (23%)

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--LDQACWLFDHMP--QKDVVS 360
           AS  R G  +H W L+ G      +ANSLI  YS   +  L  A  +FD +P   +DV S
Sbjct: 25  ASCPRHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVAS 84

Query: 361 WNSIIHAHSKDH--EALIYFEQM-ERDGVLPDHLTF------------------------ 393
           WNS+++  S+    +AL  F  M     VLP   +F                        
Sbjct: 85  WNSLLNPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALAC 144

Query: 394 ------------VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
                        SLL+    LG V    R+F  M ++   S     ++ MV  Y     
Sbjct: 145 KIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFS-----WSTMVAGYAAEKC 199

Query: 442 IDEAYS---MIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
            +EA+    +++E+   E S  V  A+L A  +   + MGE
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGE 240


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 245/433 (56%), Gaps = 10/433 (2%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           ++ C  L  +E+GI +H L   N L K+  ++  L+ +YA  G ++ A +VFD++  R +
Sbjct: 116 IKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS 175

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
               W  L+ GY +  +  +   L+  M + G+  D  T   ++KAC  +   +VG+ VH
Sbjct: 176 VL--WGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVH 233

Query: 218 LDAVRFGFGFDGFVLNA-LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
             ++R  F      L A ++DMY KC  +  AR +F+   +++++ + ++++G+      
Sbjct: 234 GVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERA 293

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSL 333
           VEAFD+FR M+     P+   +++IL + S L   R G  VHG+++R G+E D     S 
Sbjct: 294 VEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSF 353

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
           I +Y++ G +  A  +FD MP+++V+SW+S+I+A   +    EAL  F +M+   V+P+ 
Sbjct: 354 IDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNS 413

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFVSLLSAC+H G+VK G + F  M   YG+ P  EHYACMV+L GRAG I EA S I 
Sbjct: 414 VTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFI- 472

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + M  +     WGALL AC +H  V +    A+KL  +EP+    + LL  IY +AG  +
Sbjct: 473 DNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWE 532

Query: 511 DVERVERMLVDRG 523
            V  V R +  +G
Sbjct: 533 MVNCVRRKMGIKG 545



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 188/387 (48%), Gaps = 12/387 (3%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           +LL    Q K + H  ++H  +  +       + S L   Y     +D A   F+++   
Sbjct: 9   ALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCW 68

Query: 156 TAFAFPWNSLISGYAELGE--YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                 WN+++SGY++     Y D + LY +M       D F     +KAC GLGL+  G
Sbjct: 69  KRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  A++ G   D +V  +LV+MYA+ G +  A+ VFD I  ++ + +  ++ GY+ +
Sbjct: 129 ILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKY 188

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDLCI 329
               E F +F  M   G   D + +  ++    N    ++G  VHG  +RR  ++    +
Sbjct: 189 SKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV 386
             S+I +Y K   LD A  LF+    ++VV W ++I   +K     EA   F QM R+ +
Sbjct: 249 QASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI 308

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           LP+  T  ++L +C+ LGS++ G+ +   M+ + GI     ++   +++Y R G I  A 
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMI-RNGIEMDAVNFTSFIDMYARCGNIQMAR 367

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHG 473
           +  V  M  E + + W +++ A  ++G
Sbjct: 368 T--VFDMMPERNVISWSSMINAFGING 392



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDE 144
           G+ +   T   L++ C  + A + G  +H + I  + + ++  + + ++ +Y    L+D 
Sbjct: 205 GLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDN 264

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F+   +R      W +LISG+A+     +A  L+ QM  E + P+Q T   +L +C
Sbjct: 265 ARKLFETSVDRNVVM--WTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSC 322

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +R G+ VH   +R G   D     + +DMYA+CG+I  ARTVFD +  +++IS++
Sbjct: 323 SSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWS 382

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           SM+  +  +GL  EA D F  M      P+ V   S+L+  S    G    GW     + 
Sbjct: 383 SMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACS--HSGNVKEGWKQFESMT 440

Query: 325 WDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA 367
            D  +         ++ +  + G++ +A    D+MP K + S W +++ A
Sbjct: 441 RDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSA 490


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 248/441 (56%), Gaps = 12/441 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+ C  L   + G  LH  +   +L  +  I + LL +YA  G +  A  +F++M
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R      W S+ISGY +     +A+ LY +MEE+G  PD+ T   ++ ACA L  + V
Sbjct: 141 GHRNKVV--WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGV 198

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G K+H             + +ALV+MYAKCGD+  AR VFD++ +KD+ ++++++ GY+ 
Sbjct: 199 GMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVK 258

Query: 273 HGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQVHGWVLRRGVEWDL 327
           +    EA  +FR  +  G +  P     +A+ S  A    L  G  VH ++ R      +
Sbjct: 259 NNRSTEALQLFRE-VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + NSLI ++SK G +D A  +FD M  KD++SWNS+++    H    EAL  F  M+  
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTT 377

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + PD +TF+ +L+AC+H G V+ G++LF  +   YG+  + EHY CMV+L  RAGL+ E
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A   I   M  +    +WG++L AC ++ N+ +GE AA+ L +LEP N+  + LL  IY 
Sbjct: 438 AREFI-RVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYA 496

Query: 505 NAGRLDDVERVERMLVDRGLE 525
                ++V++V  ++ ++G++
Sbjct: 497 KRKMWNEVKKVRELMNEKGIQ 517



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 193/359 (53%), Gaps = 19/359 (5%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKA 203
           A+ VF     R      WNS++  +        A+  Y +M E     PD+FTFP +LK 
Sbjct: 31  AYSVFAH--TRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKG 88

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L   +VG+ +H   V++    D ++   L++MYA CGD+  AR +F+R+G+++ + +
Sbjct: 89  CALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
            SM++GY+ +    EA  +++ M  +GF PD V ++++++  + L+   +G ++H  +  
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-- 206

Query: 321 RGVEWDLC--IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
           R ++  +C  + ++L+ +Y+K G L  A  +FD +  KDV +W+++I  + K++   EAL
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEAL 266

Query: 376 IYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
             F ++     + P+ +T ++++SACA LG ++ G R     + +      V     +++
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITRTQKGHSVSLNNSLID 325

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH--GNVCMGETAAQKLFELEPD 491
           ++ + G ID A   I + M ++   + W +++    LH  G   + +    +  +L+PD
Sbjct: 326 MFSKCGDIDAA-KRIFDSMSYK-DLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPD 382



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G +    T A+L+  C +LK +  G+KLH  I    ++    + S L+ +YA  G + 
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLK 202
            A QVFD++S++  +A  W++LI GY +     +A+ L+ ++     + P++ T   V+ 
Sbjct: 233 TARQVFDKLSDKDVYA--WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +  G  VH    R   G    + N+L+DM++KCGDI  A+ +FD +  KDLIS
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS 350

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +NSM+ G+  HGL  EA   FR M      PD +    +L   S
Sbjct: 351 WNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACS 394


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 246/421 (58%), Gaps = 9/421 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H LI  + L     + + L+ +YA  G +  A  VF+  S+R   +  W+++I+GY
Sbjct: 239 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFE--SSRERNSITWSAMITGY 296

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+ GE + A++++ QM   G  P +FTF  VL A + LG + VG++ H   V+ GF    
Sbjct: 297 AQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQI 356

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           +V +ALVDMYAKCG I  A+  FD++   D++ + +M++G++ +G   EA  ++  M   
Sbjct: 357 YVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKE 416

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G  P    I+S L   A  + L  G Q+H  +++ G+     + ++L  +YSK G L+  
Sbjct: 417 GIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDG 476

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  +P +DV++WNSII   S++   + AL  FE+M+ +G +PD++TF+++L AC+H+
Sbjct: 477 MSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHM 536

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G   FS+M + YG++PR++HYACMV++  RAG++ EA   I E +  +    +W 
Sbjct: 537 GLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFI-ESITIDHGTCLWR 595

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            +L AC    +  +G  A ++L EL   +   + LL  IY +  + +DVERV  ++  RG
Sbjct: 596 IVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRG 655

Query: 524 L 524
           +
Sbjct: 656 V 656



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 185/340 (54%), Gaps = 14/340 (4%)

Query: 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176
           IP+ +   N  + + LL +Y   G++ +A +VFD M  R +F+  W+++++GYA     E
Sbjct: 146 IPSAV--SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFS--WSTMVAGYAAEKCSE 201

Query: 177 DAIALY-FQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
           +A  L+   +EE   E  +F    VL A +  LGL+ +GE++H   V+ G      V N+
Sbjct: 202 EAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLL-MGEQMHGLIVKDGLLDFVSVENS 260

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           LV MYAK G +  A  VF+    ++ I++++M+TGY  +G    A  +F  M   GF P 
Sbjct: 261 LVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPT 320

Query: 295 PVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                 +L  +S    L +G Q HG +++ G E  + + ++L+ +Y+K G +  A   FD
Sbjct: 321 EFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFD 380

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            + + D+V W +++  H ++    EAL  + +M+++G++P   T  S L ACA + +++ 
Sbjct: 381 QLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEP 440

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           G++L + +V KYG+       + +  +Y + G +++  S+
Sbjct: 441 GKQLHTQIV-KYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 4/245 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DS +         G T    TF  +L     L A+  G + H L+          + S L
Sbjct: 303 DSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSAL 362

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G I +A + FDQ+         W +++SG+ + GE+E+A+ LY +M++EG+ P
Sbjct: 363 VDMYAKCGCIADAKEGFDQLYEVDIVL--WTAMVSGHVQNGEHEEALTLYARMDKEGIIP 420

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
            + T    L+ACAG+  +  G+++H   V++G G    V +AL  MY+KCG++    +VF
Sbjct: 421 SKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVF 480

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
            RI ++D+I++NS+++G+  +G    A D+F  M + G  PD +   +IL   S   +G 
Sbjct: 481 RRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACS--HMGL 538

Query: 313 QVHGW 317
              GW
Sbjct: 539 VDRGW 543



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 51/221 (23%)

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--LDQACWLFDHMP--QKDVVS 360
           AS  R G  +H W L+ G      +ANSLI  YS   +  L  A  +FD +P   +DV S
Sbjct: 25  ASCPRHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTS 84

Query: 361 WNSIIHAHS--KDHEALIYFEQM-ERDGVLPDHLTF------------------------ 393
           WNS+++  S  +  +AL  F  M     VLP   +F                        
Sbjct: 85  WNSLLNPLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALAC 144

Query: 394 ------------VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
                        SLL+    LG V    R+F  M ++   S     ++ MV  Y     
Sbjct: 145 KIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFS-----WSTMVAGYAAEKC 199

Query: 442 IDEAYS---MIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
            +EA+    +++E+   E S  V  A+L A  +   + MGE
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGE 240


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 246/421 (58%), Gaps = 9/421 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H LI  + L     + + L+ +YA  G +  A  VF+  S+R   +  W+++I+GY
Sbjct: 133 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFE--SSRERNSITWSAMITGY 190

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+ GE + A++++ QM   G  P +FTF  VL A + LG + VG++ H   V+ GF    
Sbjct: 191 AQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQI 250

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           +V +ALVDMYAKCG I  A+  FD++   D++ + +M++G++ +G   EA  ++  M   
Sbjct: 251 YVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKE 310

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G  P    I+S L   A  + L  G Q+H  +++ G+     + ++L  +YSK G L+  
Sbjct: 311 GIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDG 370

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  +P +DV++WNSII   S++   + AL  FE+M+ +G +PD++TF+++L AC+H+
Sbjct: 371 MSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHM 430

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G   FS+M + YG++PR++HYACMV++  RAG++ EA   I E +  +    +W 
Sbjct: 431 GLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFI-ESITIDHGTCLWR 489

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            +L AC    +  +G  A ++L EL   +   + LL  IY +  + +DVERV  ++  RG
Sbjct: 490 IVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRG 549

Query: 524 L 524
           +
Sbjct: 550 V 550



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 185/340 (54%), Gaps = 14/340 (4%)

Query: 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176
           IP+ +   N  + + LL +Y   G++ +A +VFD M  R +F+  W+++++GYA     E
Sbjct: 40  IPSAV--SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFS--WSTMVAGYAAEKCSE 95

Query: 177 DAIALY-FQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
           +A  L+   +EE   E  +F    VL A +  LGL+ +GE++H   V+ G      V N+
Sbjct: 96  EAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLL-MGEQMHGLIVKDGLLDFVSVENS 154

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           LV MYAK G +  A  VF+    ++ I++++M+TGY  +G    A  +F  M   GF P 
Sbjct: 155 LVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPT 214

Query: 295 PVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                 +L  +S    L +G Q HG +++ G E  + + ++L+ +Y+K G +  A   FD
Sbjct: 215 EFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFD 274

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            + + D+V W +++  H ++    EAL  + +M+++G++P   T  S L ACA + +++ 
Sbjct: 275 QLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEP 334

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           G++L + +V KYG+       + +  +Y + G +++  S+
Sbjct: 335 GKQLHTQIV-KYGLGLGAPVGSALSTMYSKCGNLEDGMSV 373



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 4/245 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DS +         G T    TF  +L     L A+  G + H L+          + S L
Sbjct: 197 DSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSAL 256

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G I +A + FDQ+         W +++SG+ + GE+E+A+ LY +M++EG+ P
Sbjct: 257 VDMYAKCGCIADAKEGFDQLYEVDIVL--WTAMVSGHVQNGEHEEALTLYARMDKEGIIP 314

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
            + T    L+ACAG+  +  G+++H   V++G G    V +AL  MY+KCG++    +VF
Sbjct: 315 SKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVF 374

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
            RI ++D+I++NS+++G+  +G    A D+F  M + G  PD +   +IL   S   +G 
Sbjct: 375 RRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACS--HMGL 432

Query: 313 QVHGW 317
              GW
Sbjct: 433 VDRGW 437


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 250/443 (56%), Gaps = 46/443 (10%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           KN    + L+ LY   G  + A   F++M +R   +  WNS+ISGY++ G   +A+ ++ 
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVS--WNSMISGYSQQGYNLEALVIFS 263

Query: 184 QM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           +M  E  ++PD FT   +L ACA L  + +G+++H   +R      G V NAL+ MYAK 
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 243 G---------------------------------DIVKARTVFDRIGNKDLISYNSMLTG 269
           G                                 ++  AR +F+++ ++D++++ +M+ G
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWD 326
           Y+ +GL  +A ++FR M+  G +P+   ++++L+ +S L I   G Q+H   ++ G    
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHA---HSKDHEALIYFEQM 381
             + N+LI +Y+K G ++ A  +FD +P  +K++VSW S+I A   H    EA+  FE+M
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM 502

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              G+ PDH+T+V +LSAC H+G V+ G + +++M E + I P + HYACM++LYGRAGL
Sbjct: 503 LSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGL 562

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
           + EAY + +E M  E   + WG+LL +C +H N  + + AA++L  ++P N   +  L  
Sbjct: 563 LQEAY-LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALAN 621

Query: 502 IYGNAGRLDDVERVERMLVDRGL 524
           +Y   G+ ++  +  +++ DRG+
Sbjct: 622 VYSACGKWENAAQTRKLMKDRGV 644



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 227/512 (44%), Gaps = 116/512 (22%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
             +E FA +L+T  ++K    G  +H  I    L     + + L+  YA  G +  AH V
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHV 67

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYE-------------------------------D 177
           FD+M  ++ F+  WN+LISGYA+ G +E                               +
Sbjct: 68  FDEMPLKSTFS--WNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDN 125

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           AI ++ +M  E V P QFT   VL +CA    + +G K+H   V+ G G    V  +L++
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 238 MYAKCGDIVKARTVFDRIG-------------------------------NKDLISYNSM 266
           MYAKCGD V A+ VFDR+                                ++D++S+NSM
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

Query: 267 LTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++GY   G  +EA  IF  M+      PD   ++SIL   AN   L IG Q+H ++LR  
Sbjct: 246 ISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDH------------------------------ 352
            E    + N+LI +Y+K G ++ A  + +H                              
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 353 ---MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
              +  +DVV+W ++I  + ++   ++AL  F  M  +G  P+  T  ++LS  + L  +
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           + G+++ +  + K G S        ++ +Y + G I+ A   + +    +   V W +++
Sbjct: 426 EHGKQIHASAI-KAGESSTPSVTNALIAMYAKTGNINVA-KRVFDLPNGKKEIVSWTSMI 483

Query: 467 YACYLHGNVCMGETAAQKLFE------LEPDN 492
            A   HG   +G+ A   LFE      ++PD+
Sbjct: 484 MALAQHG---LGKEAIN-LFERMLSVGMKPDH 511



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 135/332 (40%), Gaps = 63/332 (18%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G    + T A++L     L  +EHG ++H             +++ L+ +YA  G I
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI 460

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A +VFD + N       W S+I   A+ G  ++AI L+ +M   G++PD  T+  VL 
Sbjct: 461 NVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  +GL+  G K +                   +M  +  +I              L  
Sbjct: 520 ACTHVGLVEQGRKYY-------------------NMMTEVHEI-----------EPTLSH 549

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA------NASLLRIGAQVHG 316
           Y  M+  Y   GLL EA+     M +   +PD +A  S+LA      NA L ++ A+   
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPI---EPDNIAWGSLLASCKIHKNADLAKVAAERLL 606

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV-----VSW---------- 361
            +        L +AN    VYS  GK + A      M  + V     +SW          
Sbjct: 607 LIDPGNSGAYLALAN----VYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAF 662

Query: 362 --NSIIHAHSKDHEALI--YFEQMERDGVLPD 389
               +IH    +   L+   +E++++ G +PD
Sbjct: 663 GVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPD 694


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/524 (31%), Positives = 283/524 (54%), Gaps = 32/524 (6%)

Query: 29  KQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT 88
           K R +K    S +R+     + +      L N +   KT + + +S+I DL  S  +   
Sbjct: 2   KVRSKKALFCSVSRLLHTERHTERQNLTTLFN-RYVDKTDVFSWNSVIADLARSGDSAEA 60

Query: 89  V-------------QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +                +F   ++ C  L  +  G + H+       + +  +SS L+ +
Sbjct: 61  LLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVM 120

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM------EEEG 189
           Y+T G +++A +VFD++  R   +  W S+I GY   G   DA++L+  +      +++ 
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVS--WTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD--IVK 247
           +  D      V+ AC+ +    + E +H   ++ GF     V N L+D YAK G+  +  
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP-DPVAISSIL---A 303
           AR +FD+I +KD +SYNS+++ Y   G+  EAF++FR ++ N     + + +S++L   +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           ++  LRIG  +H  V+R G+E D+ +  S+I +Y K G+++ A   FD M  K+V SW +
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     H    +AL  F  M   GV P+++TFVS+L+AC+H G    G R F+ M  ++
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           G+ P +EHY CMV+L GRAG + +AY +I ++M+ +   ++W +LL AC +H NV + E 
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLI-QRMKMKPDSIIWSSLLAACRIHKNVELAEI 477

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  +LFEL+  N   + LL  IY +AGR  DVERV  ++ +RGL
Sbjct: 478 SVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 258/437 (59%), Gaps = 9/437 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           ++ +L  C  L+ ++ G  +H  I ++    +  + + +L +YA  G ++EA  +FD+M 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +   +  W  LISGY++ G+  +A+AL+ +M   G +P++FT   +LKA         G
Sbjct: 168 TKDMVS--WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHG 225

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            ++H  ++++G+  +  V ++L+DMYA+   + +A+ +F+ +  K+++S+N+++ G+   
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASL--LRIGAQVHGWVLRRGVEWDLCIAN 331
           G       +F  M+  GF+P     SS+LA AS   L  G  VH  V++ G +    I N
Sbjct: 286 GEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGN 345

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLP 388
           +LI +Y+K G +  A  +F  + ++D+VSWNSII     H    EAL  FEQM +  V P
Sbjct: 346 TLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQP 405

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           + +TF+S+L+AC+H G +  G+  F +M +K+ I  +V H+  +V+L GRAG ++EA + 
Sbjct: 406 NEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEA-NK 463

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
            +E+M  + +  VWGALL AC +H N+ +G  AA+++FEL+P +     LL  IY +AGR
Sbjct: 464 FIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 523

Query: 509 LDDVERVERMLVDRGLE 525
           L D  +V +M+ + G++
Sbjct: 524 LSDAAKVRKMMKESGVK 540



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 179/334 (53%), Gaps = 21/334 (6%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           +EP++  + ++L  C  L  ++ G  +H       F  D  +LN +++MYAKCG + +A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL- 308
            +FD++  KD++S+  +++GY   G   EA  +F  M+  GF P+   +SS+L  +    
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGP 220

Query: 309 --RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
               G Q+H + L+ G + ++ + +SL+ +Y++   + +A  +F+ +  K+VVSWN++I 
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 367 AHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            H++  E    +  F QM R G  P H T+ S+L ACA  GS++ G+ + + ++ K G  
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVI-KSGGQ 338

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P       ++++Y ++G I +A    V +   +   V W +++     HG   +G  A Q
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKK--VFRRLVKQDIVSWNSIISGYAQHG---LGAEALQ 393

Query: 484 KLFE------LEPDNEHNFELLIKIYGNAGRLDD 511
            LFE      ++P NE  F  ++    ++G LD+
Sbjct: 394 -LFEQMLKAKVQP-NEITFLSVLTACSHSGLLDE 425



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 147/279 (52%), Gaps = 7/279 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SLL+      +  HG +LH          N  + S LL +YA +  + EA  +F+ +
Sbjct: 208 TLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +   +  WN+LI+G+A  GE E  + L+ QM  +G EP  FT+  VL ACA  G +  
Sbjct: 268 AAKNVVS--WNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQ 324

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH   ++ G     ++ N L+DMYAK G I  A+ VF R+  +D++S+NS+++GY  
Sbjct: 325 GKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQ 384

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HGL  EA  +F  M+     P+ +   S+L   +++ LL  G      + +  +E  +  
Sbjct: 385 HGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAH 444

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA 367
             +++ +  + G+L++A    + MP K   + W +++ A
Sbjct: 445 HVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGA 483


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 237/423 (56%), Gaps = 40/423 (9%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G ++ A +VFD++ +  A+ +  N++  GY       + I +Y +M  + V P++FT+P 
Sbjct: 68  GDLNYALEVFDKIPHPDAYIY--NTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +++AC     I  G+++H   ++FGFG DGF LN L+ MY     + +AR VFD +  +D
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD 185

Query: 260 LISYNSMLTGYIHHGL-------------------------------LVEAFDIFRGMIL 288
           ++S+ S++TGY   G                                L EAF +F  M L
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
                D    +S+L+  +    L  G  +HG++ + G+E D  +A ++I +Y K G L++
Sbjct: 246 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F+ +PQK + SWN +I     H K   A+  F++MER+ V PD +TFV++LSACAH
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 365

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V+ G+  F  M E  G+ P +EH+ CMV+L GRAGL++EA  +I E M       V 
Sbjct: 366 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE-MPVNPDAGVL 424

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           GAL+ AC +HGN  +GE   +K+ ELEP N   + LL  +Y +AGR +DV +V +++ DR
Sbjct: 425 GALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDR 484

Query: 523 GLE 525
           G++
Sbjct: 485 GVK 487



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 160/386 (41%), Gaps = 76/386 (19%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  L+  C    A+E G ++H  +       +    + L+ +Y  F  +++A +VFD M
Sbjct: 122 TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 181

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
             R   ++                              WN++I+ Y +     +A AL+ 
Sbjct: 182 PQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M  E V  D+F    +L AC GLG +  G+ +H    + G   D  +   ++DMY KCG
Sbjct: 242 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 301

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            + KA  VF+ +  K + S+N M+ G   HG    A ++F+ M      PD +   ++L 
Sbjct: 302 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 361

Query: 303 --ANASLLRIGAQVHGWV-----LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
             A++ L+  G     ++     L+ G+E   C+ + L     + G L++A  L + MP 
Sbjct: 362 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLL----GRAGLLEEARKLINEMP- 416

Query: 356 KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
                                         V PD     +L+ AC   G+ ++GE++   
Sbjct: 417 ------------------------------VNPDAGVLGALVGACRIHGNTELGEQIGKK 446

Query: 416 MVEKYGISPRVE-HYACMVNLYGRAG 440
           ++E   + P     Y  + NLY  AG
Sbjct: 447 VIE---LEPHNSGRYVLLANLYASAG 469



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 48/328 (14%)

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA--KCGDIVKARTVFDRIGNK 258
           L +C+ +  ++   + H   +R G   D   +  ++   A  K GD+  A  VFD+I + 
Sbjct: 27  LDSCSTMAELK---QYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHP 83

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           D   YN++  GY+   L      ++  M+     P+      ++    +   +  G Q+H
Sbjct: 84  DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIH 143

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS------ 369
             VL+ G   D    N+LI +Y     L+QA  +FD+MPQ+DVVSW S+I  +S      
Sbjct: 144 AHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVD 203

Query: 370 ----------------------------KDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
                                       + HEA   F++M  + V+ D     S+LSAC 
Sbjct: 204 KAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACT 263

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
            LG+++ G+ +    +EK GI    +    ++++Y + G +++A  +  E  +   S   
Sbjct: 264 GLGALEQGKWIHGY-IEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISS-- 320

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELE 489
           W  ++    +HG    GE A +   E+E
Sbjct: 321 WNCMIGGLAMHGK---GEAAIELFKEME 345


>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
          Length = 562

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 248/446 (55%), Gaps = 10/446 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++G      TF S +  C   +    G ++H          +  + S L+ ++   G +
Sbjct: 106 LRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQSALMDMHLRCGSV 165

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A ++F +M  +   +  WNSL+ G+ E     DA+ L+  M  +G+ PD FTF   LK
Sbjct: 166 GDARRLFAEMERKDLVS--WNSLMRGFVEREHCNDALGLFDSMLRDGMLPDHFTFGSALK 223

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  + ++   E +H   ++ G+  +   + +L+D YAKC  +  AR ++D +   DL+S
Sbjct: 224 ACGAISVLFNVELIHACIIKLGYWDENVAIASLIDSYAKCRSLSSARVIYDSMCEPDLVS 283

Query: 263 YNSMLTGY-IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
             ++++GY +      +A  +F  +   G   D + +SS+L   AN + ++ G Q+H ++
Sbjct: 284 STALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLLGVCANVASIKFGTQIHAYM 343

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            ++    DL + N+L+ +Y+K G+   +   FD MP ++V+SW S+I +   H    +A+
Sbjct: 344 HKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAV 403

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +ME DGV P+ +TF+SLLSAC+H G +  G   F+ M+ KYGI PR +HY+  V+L
Sbjct: 404 TLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMSKYGIDPRFKHYSSAVDL 463

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             R G +++A+ M+V+    E    ++G +L AC +HGN+ +GETAA+ L  ++P++  N
Sbjct: 464 LARGGQLEDAW-MLVQNTNTECKSSMYGTMLGACKVHGNMPLGETAAKNLLSIDPESSVN 522

Query: 496 FELLIKIYGNAGRLDDVERVERMLVD 521
           + +L  +Y  +   +D +R  ++LV+
Sbjct: 523 YAVLANMYAESHLWEDAQRTRKLLVE 548



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 231/463 (49%), Gaps = 32/463 (6%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHR--LIPTNLLRKNKGISSKLLRLYATF 139
           S+ N        ++SLL++     A   G  +H   +I ++    +  +++KL+  Y+ F
Sbjct: 2   SLANAPKSAAALYSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHF 61

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A +VFD M +R+  +  W +++SGYA+    ++A+ L+  M   G  P+QFTF  
Sbjct: 62  GDVAAARRVFDGMPHRSVVS--WTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGS 119

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
            ++AC G    R GE++H  A +  F  D FV +AL+DM+ +CG +  AR +F  +  KD
Sbjct: 120 AVRACTGARCARSGEQIHACAAKGRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKD 179

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV---HG 316
           L+S+NS++ G++      +A  +F  M+ +G  PD     S L     + +   V   H 
Sbjct: 180 LVSWNSLMRGFVEREHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHA 239

Query: 317 WVLRRGVEWDLCIA-NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH--- 372
            +++ G  WD  +A  SLI  Y+K   L  A  ++D M + D+VS  ++I  +S D    
Sbjct: 240 CIIKLGY-WDENVAIASLIDSYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYS 298

Query: 373 -EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            +A+  F ++ R G+  D +   SLL  CA++ S+K G ++ + M +K  +       A 
Sbjct: 299 DDAMKLFCKIHRKGLRIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNA- 357

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFE 487
           +V++Y ++G        +  +  F+  P    + W +L+ +C  HG    GE A      
Sbjct: 358 LVDMYAKSG------EFLDSRRAFDEMPNRNVISWTSLITSCAQHG---FGEDAVTLFAR 408

Query: 488 LEPD----NEHNFELLIKIYGNAGRLDD-VERVERMLVDRGLE 525
           +E D    N+  F  L+    ++G ++  +E    M+   G++
Sbjct: 409 MEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMSKYGID 451


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 273/492 (55%), Gaps = 11/492 (2%)

Query: 39  SRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLL 98
           S+++I   +   KS  T     +K     + +    + + LE  ++    V   T+ +L+
Sbjct: 73  SKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFELFEILE--IRCSFKVGVSTYDALV 130

Query: 99  ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158
           E C +LK++    +++  + +N     + + +++L ++   G+I +A ++FD++  R  +
Sbjct: 131 EACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLY 190

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           ++   S+ISG+   G Y +A  L+  M EE  + +  TF  +L+A AGLG I VG+++H+
Sbjct: 191 SY--YSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHV 248

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
            A++ G   + FV   L+DMY+KCGDI  AR  F+ +  K  +++N+++ GY  HG   E
Sbjct: 249 CALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEE 308

Query: 279 AFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A  +   M  +G   D   +S    I    + L +  Q H  ++R G E ++    +L+ 
Sbjct: 309 ALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVD 368

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLT 392
            YSK G++D A ++FD +P+K+++SWN+++     H +  +A+  FE+M    V P+H+T
Sbjct: 369 FYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVT 428

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           F+++LSACA+ G  + G  +F  M E +GI PR  HYACM+ L GR GL+DEA + I  +
Sbjct: 429 FLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFI-RR 487

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
              + +  +W ALL AC +  N+ +G   A+KL+ + P+   N+ ++  +Y + G+  + 
Sbjct: 488 APLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEA 547

Query: 513 ERVERMLVDRGL 524
             V   L  +GL
Sbjct: 548 AGVLETLESKGL 559


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 247/438 (56%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFAS+L+ C  L+    G  +H         +   +  +L+ LY   G +D+A QVF++M
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                   PW+ +I+ YA+  + E+AI ++ +M    V P+QFT   +L+ACA L  +++
Sbjct: 308 PKDDVI--PWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQL 365

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   V+ G   + FV NAL+DMYAKCG +  +  +F    N   +S+N+++ GY+ 
Sbjct: 366 GNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQ 425

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G   +A  +F+ M+        V  SS+L   A  + L  G+Q+H   ++   + +  +
Sbjct: 426 AGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVV 485

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+LI +Y+K G +  A  +FD + + D VSWN++I  +S      EAL  FE M     
Sbjct: 486 GNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETEC 545

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TFV +LSAC++ G +  G+  F  MVE+Y I P  EHY CMV L GR+G +D+A 
Sbjct: 546 KPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKA- 604

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           + +V ++ FE S +VW ALL AC +H +V +G  +AQ++ E+EP++E    LL  IY NA
Sbjct: 605 AKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANA 664

Query: 507 GRLDDVERVERMLVDRGL 524
            R  +V  +   +  +G+
Sbjct: 665 RRWGNVASIRTSMKRKGI 682



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 199/402 (49%), Gaps = 22/402 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLYATFGLIDEA 145
            T  + SLL++C +      G  LH      +++K   +    ++ LL  Y  +  + +A
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLH----CEIIKKGNCLDLFANNILLNFYVKYDSLPDA 98

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M +R   +F   +LI GY++   + +AI L+ +++ EG E + F F  VLK   
Sbjct: 99  AKLFDEMPDRNTVSFV--TLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLV 156

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                ++G  VH    + GF  D FV  AL+D Y+ CG    AR VFD I  KD++S+  
Sbjct: 157 SAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTG 216

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRG 322
           M+  Y+ +    E+  +F  M + GF P+    +S+L       +  +G  VHG   +  
Sbjct: 217 MVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTS 276

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
              +L +   LI +Y K G +D A  +F+ MP+ DV+ W+ +I  ++   +  EA+  F 
Sbjct: 277 YLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFC 336

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M R  VLP+  T  SLL ACA L  +++G ++   +V K G+   V     ++++Y + 
Sbjct: 337 RMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVV-KVGLDMNVFVSNALMDMYAKC 395

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           G ++ +  +  E      + V W  ++      GN   GE A
Sbjct: 396 GRMENSLQLFSESP--NCTDVSWNTVIVGYVQAGN---GEKA 432



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 137/281 (48%), Gaps = 19/281 (6%)

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           E + + +  +L++C   G    G+ +H + ++ G   D F  N L++ Y K   +  A  
Sbjct: 41  EFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK 100

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASL 307
           +FD + +++ +S+ +++ GY       EA  +F  +   G + +P   S++   L +A  
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW 160

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
            ++G  VH  V + G + D  +  +LI  YS  G  + A  +FD +  KD+VSW  ++  
Sbjct: 161 AKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           + ++    E+L  F +M   G  P++ TF S+L AC       VG  +F+V    +G + 
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC-------VGLEVFNVGKAVHGCAF 273

Query: 425 RVEHY------ACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           +  +         +++LY ++G +D+A  +  E  + +  P
Sbjct: 274 KTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIP 314


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 161/486 (33%), Positives = 260/486 (53%), Gaps = 56/486 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C  + A++HG ++H     N L  +  + + L+ +YA    ++EA++VF+ +
Sbjct: 236 TLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGI 295

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE------------------------ 188
             +   +  WN++++GY+++G ++ A++L+  M+EE                        
Sbjct: 296 KKKDVVS--WNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFE 353

Query: 189 -----------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-------DGF 230
                      G+EP+  T   +L  CA +G +  G++ H   ++            D  
Sbjct: 354 ALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLL 413

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKD--LISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
           VLN L+DMYAKC     AR++FD I  KD  ++++  M+ GY  HG   +A  +F  +  
Sbjct: 414 VLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFK 473

Query: 289 NGFDPDPVAIS---SILANASL--LRIGAQVHGWVLRRGVEWD-LCIANSLIVVYSKDGK 342
                 P A +   +++A A L  LR+G Q+H + LR   E + L + N LI +YSK G 
Sbjct: 474 QKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGD 533

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           +D A  +FD+M  ++VVSW S++     H +  EAL  F+QM++ G   D +TF+ +L A
Sbjct: 534 IDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYA 593

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+H G V  G   F  MV+ +GI+P  EHYACMV+L GRAG ++EA  +I + M  E + 
Sbjct: 594 CSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELI-KNMSMEPTA 652

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           VVW ALL A  +H N+ +GE AA KL EL  +N+ ++ LL  +Y NA R  DV R+  ++
Sbjct: 653 VVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLM 712

Query: 520 VDRGLE 525
              G+ 
Sbjct: 713 KHTGIR 718



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 243/519 (46%), Gaps = 94/519 (18%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C ++ ++ HG  +H ++  N L  N  I + ++ +Y   G +D+AHQ+FD++
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 153 SNRTAFAF-PWNSLISGYAELGEYEDAIALYFQMEEE---GVEPDQFTFPRVLKACAGLG 208
             R       WNS+++ Y + G+   A+ + F+M       + PD  T   +L ACA + 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            ++ G++VH  +VR G   D FV NALV MYAKC  + +A  VF+ I  KD++S+N+M+T
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 269 GYIHHGLL-----------------------------------VEAFDIFRGMILNGFDP 293
           GY   G                                      EA D+FR M L G +P
Sbjct: 309 GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP 368

Query: 294 DPVAISSIL---ANASLLRIGAQVHGWVLRR--GVEW-----DLCIANSLIVVYSKDGKL 343
           + V ++S+L   A+   L  G Q H +V++    + W     DL + N LI +Y+K    
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSY 428

Query: 344 DQACWLFDHMPQKD--VVSWNSIIHA---HSKDHEALIYFEQM--ERDGVLPDHLTFVSL 396
             A  +FD +  KD  VV+W  +I     H + ++AL  F Q+  ++  + P+  T    
Sbjct: 429 RVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCA 488

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI------- 449
           L ACA LG +++G +L +  +     S  +    C++++Y ++G ID A ++        
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 450 --------------------------VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
                                     ++K+ F    + +  +LYAC   G V  G     
Sbjct: 549 VVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFH 608

Query: 484 KL---FELEPDNEHNFELLIKIYGNAGRLDD-VERVERM 518
            +   F + P  EH +  ++ + G AGRL++ +E ++ M
Sbjct: 609 DMVKGFGITPGAEH-YACMVDLLGRAGRLNEAMELIKNM 646



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 51/333 (15%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G   EA  +  ++    +  F WN+LI    +LG  +D +  Y QM+  G  PD +
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TFP VLKAC  +  +R G  VH      G G + F+ N++V MY +CG +  A  +FD +
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 256 GNK---DLISYNSMLTGYIHHGLLVEAFDI-FRGMILNGFD----PDPVAISSIL---AN 304
             +   D++S+NS+L  Y+  G    A  I FR  + N +     PD + + +IL   A+
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFR--MGNHYSLKLRPDAITLVNILPACAS 246

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L+ G QVHG+ +R G+  D+ + N+L+ +Y+K  K+++A  +F+ + +KDVVSWN++
Sbjct: 247 VFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAM 306

Query: 365 IHAHS------------------------------------KDH--EALIYFEQMERDGV 386
           +  +S                                    K H  EAL  F QM+  G+
Sbjct: 307 VTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGL 366

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
            P+ +T  SLLS CA +G++  G++  + +++ 
Sbjct: 367 EPNVVTLASLLSGCASVGALLYGKQTHAYVIKN 399



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 23/301 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG-------ISSKLLRLYAT 138
           G+     T ASLL  C  + A+ +G + H  +  N+L  N         + + L+ +YA 
Sbjct: 365 GLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFT 196
                 A  +FD +  +      W  +I GYA+ GE  DA+ L+ Q+  ++  ++P+ FT
Sbjct: 425 CKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFT 484

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRI 255
               L ACA LG +R+G ++H  A+R     +  +V N L+DMY+K GDI  AR VFD +
Sbjct: 485 LSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNM 544

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--------L 307
             ++++S+ S++TGY  HG   EA  +F  M   GF  D +    +L   S        +
Sbjct: 545 KLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGM 604

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIH 366
           +     V G+ +  G E   C+ + L     + G+L++A  L  +M  +   V W +++ 
Sbjct: 605 IYFHDMVKGFGITPGAEHYACMVDLL----GRAGRLNEAMELIKNMSMEPTAVVWVALLS 660

Query: 367 A 367
           A
Sbjct: 661 A 661



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 358 VVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           V  WN++I    K     + L ++ QM+R G LPDH TF  +L AC  + S++ G  + +
Sbjct: 92  VFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHA 151

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHG 473
           ++    G+   V     +V +YGR G +D+A+ M  E +E +   +V W ++L A Y+ G
Sbjct: 152 IVCAN-GLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSIL-AAYVQG 209


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 276/536 (51%), Gaps = 88/536 (16%)

Query: 69  LQALDSIIQDLESSVQNGI------TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL 122
           + A     Q L+   +N I        + E++A L+ET    ++++ G KLH L+ TN  
Sbjct: 1   MHAFVRTTQSLKIPTKNAIFNHHFLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGY 60

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
            +   I+S L+ LY T G +  A ++FD++         W +LI+  A  G ++ A+ ++
Sbjct: 61  VRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHR--WIALIATCARCGFHDHALEVF 118

Query: 183 FQMEEEGVEPDQ--FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG-------------- 226
            +M+    +     F  P VLKAC  +G    GE+VH   ++  F               
Sbjct: 119 SEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYS 178

Query: 227 -----------FDGFV------LNALVDMYAKCG-------------------DIVKART 250
                      FDG V      +NA+V  YA+ G                   ++V    
Sbjct: 179 KCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNA 238

Query: 251 VFDRIGNK--------------------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           +      K                    D++S+ S+L+G++ +    EAFD F+ M+L G
Sbjct: 239 LISGFAQKCDREMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLG 298

Query: 291 FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
           F P    IS++L   A  + +R G ++HG+ L  GVE DL + ++L+ +Y+K G + +A 
Sbjct: 299 FCPTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEAR 358

Query: 348 WLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHL 403
            LF  MP+K+ V+ NS+I     H    EA+  F QME +GV   DHLTF + L+AC+H+
Sbjct: 359 TLFYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHV 418

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G +++G+RLF +M EKY I PR+EHYACMV+L+GRAG ++EAY  I++ M  +    VWG
Sbjct: 419 GDIELGQRLFKIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYG-IIKSMPVKPDLFVWG 477

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           ALL AC  HG+V + E AA+ L ELEP++  N  LL  +Y +AG    VER++R +
Sbjct: 478 ALLAACRNHGHVELAEVAAKHLSELEPESAGNRLLLSSLYADAGTWGKVERIKRRI 533


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 254/439 (57%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L TC  L A+  G ++H  +     + N  + S L+ +YA +G +  A ++  ++
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 +  W ++I+GY +   + +A+ L+ +ME  G++ D   F   + ACAG+  +R 
Sbjct: 525 PEDDVVS--WTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  +   GFG D  + NAL+ +YA+CG I +A   F++IG+K+ IS+NS+++G   
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQ 642

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G   EA  +F  M+    + +     S ++ A+    ++ G Q+H  VL+ G + +  +
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV 702

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
           +NSLI +Y+K G +  A   F+ M +++V+SWN++I  +S+     EAL  FE+M+  G+
Sbjct: 703 SNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI 762

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +P+H+TFV +LSAC+H+G VK G   F  M + + + P+ EHY C+V+L GRAG +D A 
Sbjct: 763 MPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAM 822

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E M   A  ++W  LL AC +H N+ +GE AA  L ELEP++   + L+  IY  +
Sbjct: 823 EYIKE-MPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVS 881

Query: 507 GRLDDVERVERMLVDRGLE 525
            +    +   +++ D G++
Sbjct: 882 RQWIHRDWSRKLMKDXGVK 900



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 232/464 (50%), Gaps = 25/464 (5%)

Query: 33  QKQQQISRNRI-TTFSSYPKSSPTPLLTN--QKAFPKTKLQALDSIIQDLESSVQNGITV 89
           + ++ IS  RI +T +S    S   L++   Q+ F    L+    + +D        +  
Sbjct: 308 RSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC-------LKP 360

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
              T ASLL  C  + A+  G++LH       +  +  +   LL LY+    ++ AH+ F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
             +   T     WN ++  Y +L    D+  ++ QM+ EG+ P+QFT+P +L+ C  LG 
Sbjct: 421 --LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           + +GE++H   ++ GF  + +V + L+DMYAK G +  A  +  R+   D++S+ +M+ G
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           Y+ H +  EA  +F  M   G   D +  +S +   A    LR G Q+H      G   D
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
           L I N+LI +Y++ G++ +A   F+ +  K+ +SWNS++   ++     EAL  F +M R
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
                +  T+ S +SA A L ++K G+++ S MV K G     E    +++LY ++G I 
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQIHS-MVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           +A+    +    E + + W A++     HG  C  E  A +LFE
Sbjct: 718 DAWREFNDMS--ERNVISWNAMITGYSQHG--CGME--ALRLFE 755



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 204/382 (53%), Gaps = 15/382 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
             +S+L    +++  E G +LH L+          + + L+ LY+    +  A ++F  M
Sbjct: 263 VLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           ++R   ++  NSLISG  + G  + A+ L+ +M+ + ++PD  T   +L ACA +G +  
Sbjct: 323 NSRDGVSY--NSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++ G   D  +  +L+D+Y+KC D+  A   F     ++++ +N ML  Y  
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQ 440

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
              L ++F+IFR M + G  P+     SIL   +    L +G Q+H  V++ G + ++ +
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            + LI +Y+K G+L  A  +   +P+ DVVSW ++I     H    EAL  FE+ME  G+
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGI 560

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY--GISPRVEHYACMVNLYGRAGLIDE 444
             D++ F S +SACA + +++ G+++ +   + Y  G    +     +++LY R G I E
Sbjct: 561 QFDNIGFASAISACAGIRALRQGQQIHA---QSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 445 AYSMIVEKMEFEASPVVWGALL 466
           AY +  EK+  + + + W +L+
Sbjct: 618 AY-LAFEKIG-DKNNISWNSLV 637



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 211/420 (50%), Gaps = 15/420 (3%)

Query: 59  TNQKAFPKTKL---QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           TN  +F +T L   Q     IQ +    + G+    + +  LLE C    ++   ++LH 
Sbjct: 23  TNSHSFDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHC 82

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            I  +       +   L+  Y   G    A +VFD+ SNR+ F+  WN +I  +      
Sbjct: 83  RISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFS--WNKMIHVFVAQKSN 140

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNA 234
                L+ +M  EG+ P+ +TF  VLKAC G  +     ++VH     +GF     V N 
Sbjct: 141 FQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANL 200

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+D+Y+K G I  A+ VF+ I  KD++++ +M++G   +GL  EA  +F  M  +   P 
Sbjct: 201 LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPT 260

Query: 295 PVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
           P  +SS+L+ ++   L  +G Q+H  V++ G   +  + N L+ +YS+  KL  A  +F 
Sbjct: 261 PYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS 320

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  +D VS+NS+I           AL  F +M+RD + PD +T  SLLSACA +G++  
Sbjct: 321 TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G +L S  + K G+S  +     +++LY +   ++ A+   +   E E + V+W  +L A
Sbjct: 381 GMQLHSHAI-KAGMSADIILEGSLLDLYSKCADVETAHKFFLXT-ETE-NIVLWNVMLVA 437



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 204/388 (52%), Gaps = 12/388 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIK-LHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           GIT    TFA +L+ C       + +K +H          +  +++ L+ LY+  G I+ 
Sbjct: 154 GITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIES 213

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VF+ +  +      W ++ISG ++ G  E+AI L+  M    + P  +    VL A 
Sbjct: 214 AKKVFNCICMKDIVT--WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAS 271

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             + L  +GE++H   +++GF  + +V N LV +Y++   ++ A  +F  + ++D +SYN
Sbjct: 272 TKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYN 331

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           S+++G +  G    A ++F  M  +   PD + ++S+L   A+   L  G Q+H   ++ 
Sbjct: 332 SLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA 391

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-DH--EALIYF 378
           G+  D+ +  SL+ +YSK   ++ A   F     +++V WN ++ A+ + D+  ++   F
Sbjct: 392 GMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM+ +G++P+  T+ S+L  C  LG++ +GE++ + ++ K G    V   + ++++Y +
Sbjct: 452 RQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI-KTGFQLNVYVCSVLIDMYAK 510

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G +  A ++ + +   E   V W A++
Sbjct: 511 YGQL--ALALRILRRLPEDDVVSWTAMI 536



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 19/303 (6%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +Q  E     GI      FAS +  C  ++A+  G ++H          +  I++ L+ L
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G I EA+  F+++ ++   +  WNSL+SG A+ G +E+A+ ++ +M     E + F
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNIS--WNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMF 666

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T+   + A A L  I+ G+++H   ++ G+  +  V N+L+ +YAK G I  A   F+ +
Sbjct: 667 TYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDM 726

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGA 312
             +++IS+N+M+TGY  HG  +EA  +F  M + G  P+ V    +L+  S   L++ G 
Sbjct: 727 SERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGL 786

Query: 313 -------QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSI 364
                  ++H  V +   E  +C+ + L     + G+LD+A      MP   D + W ++
Sbjct: 787 DYFESMFKIHDLVPKS--EHYVCVVDLL----GRAGQLDRAMEYIKEMPIPADAMIWRTL 840

Query: 365 IHA 367
           + A
Sbjct: 841 LSA 843


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 171/508 (33%), Positives = 273/508 (53%), Gaps = 22/508 (4%)

Query: 37  QISRNRITTFSSYPKSSPTPL----LTNQKAFPKTKLQALDSIIQDLE--SSVQNGITVQ 90
            +S N   + +    S+PT L    L N      +K   LD  ++ +E   S        
Sbjct: 8   SLSTNITVSTNITATSAPTTLHKHRLHNSTLKSLSKSGKLDEALRLIEYWPSKSPATAPD 67

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPT-------NLLRKNKGISSKLLRLYATFGLID 143
            E  A  L +C   KA+EHG +L+  +         NLL  N  +  KL+ L++    +D
Sbjct: 68  VEACALFLHSCISRKALEHGQRLYLQLLLYRDRCNHNLL-NNPTLKGKLITLFSVCRRVD 126

Query: 144 EAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           EA +VF+            W ++  GY+  G  ++A+ LY++M  +  +   F F   LK
Sbjct: 127 EARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALK 186

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC+ LG ++ G  VH   ++     D  V NAL+ +Y++ G   +A  VFD + +++++S
Sbjct: 187 ACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVS 246

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NS++ G +    + EA + FR M   G     V +++IL   A  + L  G ++H  ++
Sbjct: 247 WNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIV 306

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALI 376
           +   + D  + NSL+ +Y+K G +D    +F+ M  KD+ SWN++I  ++   +  EA+ 
Sbjct: 307 KSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAME 366

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M   G  PD +TF++LLS C+H G    G RLF +M   YGISP VEHYAC+V++ 
Sbjct: 367 SFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVL 426

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG I EA   IV+ M F+ +  +WG+LL +C LHGNV + E  A++LFELEP+N  N+
Sbjct: 427 GRAGRIKEALE-IVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNY 485

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  IY NAG  + V+ V   +  RG+
Sbjct: 486 VMLSNIYANAGMWESVKVVREFMEKRGM 513


>gi|242095158|ref|XP_002438069.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
 gi|241916292|gb|EER89436.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
          Length = 563

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 247/446 (55%), Gaps = 10/446 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++G      TF S    C   +    G ++H          +  + S L+ ++   G +
Sbjct: 109 LRSGARPNQFTFGSAARACAGGRCARSGEQVHACAAKGRHAGDMFVQSALMDMHLRCGSV 168

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A ++F +M  +   +  WN+L+ G+ E G Y DA+ L+  M  +G+ PD FTF   LK
Sbjct: 169 GDARRLFAEMERKDLVS--WNALMRGFVERGHYSDALGLFASMLRDGMLPDHFTFGSALK 226

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  + +I   E +H   ++ G+  +     +L+D YAKC  +  AR ++D I   DL+S
Sbjct: 227 ACGAISVIFNVELIHTCIIKLGYWDEKVATASLIDSYAKCRSLSSARVIYDSICEPDLVS 286

Query: 263 YNSMLTGY-IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
             ++++ + +      +A  +F  +   G   D + +S++L   AN + ++ G Q+H ++
Sbjct: 287 STALISDHSMDRNYSEDAMKLFCKIHREGLRIDGILLSALLGVCANVASIKFGTQIHAYM 346

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            ++    DL + N+L+ +Y+K G+   +   FD MP ++V+SW S+I A   H    +A+
Sbjct: 347 HKKQPMGDLALDNALVDMYAKSGEYLDSRRAFDEMPSRNVISWTSLITACAQHGFGEDAV 406

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +ME DGV P+ +TF+SLLSAC+H G +  G   F+ M+ KYGI PR +HY+  ++L
Sbjct: 407 TLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMNKYGIDPRAKHYSSAIDL 466

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             R G +++A+ M+++K   E    ++GA+L AC +HGN+ +GETAA  LF ++P +  N
Sbjct: 467 LARGGQLEDAW-MLLQKTNTECKSSMYGAMLGACKVHGNIPLGETAANNLFSIDPKSSVN 525

Query: 496 FELLIKIYGNAGRLDDVERVERMLVD 521
           + +L  +Y  +   +D +R  ++L +
Sbjct: 526 YAVLANMYAESCLWEDAQRTRKLLAE 551



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 233/470 (49%), Gaps = 43/470 (9%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLI--------PTNLLRKNKGISSKL 132
           S+ N        ++SLL++C    A   G  +H R I        P +LL     +S+KL
Sbjct: 2   SLVNAPKSAAALYSSLLQSCIGANAFRQGKSVHHRAIITASSDPSPPDLLH----LSTKL 57

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           +  Y+ FG +  A  VFD M +R+  +  W +++SGYA+ G   +A+ L+  M   G  P
Sbjct: 58  VMFYSHFGDVAAARAVFDGMPHRSVVS--WTAMVSGYAKNGRAPEALELFALMLRSGARP 115

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           +QFTF    +ACAG    R GE+VH  A +     D FV +AL+DM+ +CG +  AR +F
Sbjct: 116 NQFTFGSAARACAGGRCARSGEQVHACAAKGRHAGDMFVQSALMDMHLRCGSVGDARRLF 175

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
             +  KDL+S+N+++ G++  G   +A  +F  M+ +G  PD     S L     + +  
Sbjct: 176 AEMERKDLVSWNALMRGFVERGHYSDALGLFASMLRDGMLPDHFTFGSALKACGAISVIF 235

Query: 313 QV---HGWVLRRGVEWDLCIAN-SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            V   H  +++ G  WD  +A  SLI  Y+K   L  A  ++D + + D+VS  ++I  H
Sbjct: 236 NVELIHTCIIKLGY-WDEKVATASLIDSYAKCRSLSSARVIYDSICEPDLVSSTALISDH 294

Query: 369 SKDH----EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           S D     +A+  F ++ R+G+  D +   +LL  CA++ S+K G ++ + M +K  +  
Sbjct: 295 SMDRNYSEDAMKLFCKIHREGLRIDGILLSALLGVCANVASIKFGTQIHAYMHKKQPMGD 354

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGET 480
                A +V++Y ++G        +  +  F+  P    + W +L+ AC  HG    GE 
Sbjct: 355 LALDNA-LVDMYAKSG------EYLDSRRAFDEMPSRNVISWTSLITACAQHG---FGED 404

Query: 481 AAQKLFELEPD----NEHNFELLIKIYGNAGRLDD-VERVERMLVDRGLE 525
           A      +E D    N+  F  L+    ++G ++  +E    M+   G++
Sbjct: 405 AVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMNKYGID 454


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 261/449 (58%), Gaps = 9/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI   + TF S L +  +  +++   ++H  I  + +  +  ++S L+ LY      
Sbjct: 204 ISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDA 263

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++F+ +S +      + ++ISGY   G  +DA+ ++  + ++ + P+  TF  +L 
Sbjct: 264 VMACKMFN-LSTKFDIVI-YTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILP 321

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAGL  I++G ++H   ++        V +A+++MYAKCG +  A  +F RI  KD I 
Sbjct: 322 ACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAIC 381

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NS++T +   G   EA  +FR M + G   D V +S+ L   AN   L  G ++HG+++
Sbjct: 382 WNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMI 441

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +   E DL   ++LI +Y+K GKL+ A  +F+ M +K+ V+WNSII A   H    ++L 
Sbjct: 442 KGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLA 501

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F  M  +G+ PDH+TF+++LS+C H G V+ G R F  M E+YGI  ++EHYACM +L+
Sbjct: 502 LFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLF 561

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +DEA+  ++  M F  +  VWG LL AC +HGNV + E A++ L +LEP N   +
Sbjct: 562 GRAGHLDEAFE-VITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYY 620

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  +  +AG+   V +++ ++ +RG++
Sbjct: 621 LLLTHVLADAGKWRSVHKIQHLMKERGVQ 649



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 241/458 (52%), Gaps = 14/458 (3%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DS I+  +  + +     + TFA +L        VE+G +LH L+  + L     + + L
Sbjct: 93  DSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTL 152

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y+    + +A ++FD M         WN +I GY + G  +DA  L+ +M   G++P
Sbjct: 153 VTVYSKGRQLGDARKLFDMMPQIDLVV--WNRMIGGYVQNGFMDDASMLFNEMISAGIKP 210

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  TF   L + A    ++  +++H   VR G   D ++ +AL+D+Y KC D V A  +F
Sbjct: 211 DSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMF 270

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
           +     D++ Y +M++GY+ +G+  +A +IFR ++     P+ +  SSIL   A  + ++
Sbjct: 271 NLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIK 330

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
           +G ++HG++++  +E    + ++++ +Y+K G+LD A  +F  +  KD + WNSII + S
Sbjct: 331 LGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFS 390

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           +D    EA+  F QM  +GV  D +T  + LSACA++ ++  G+ +   M+ K      +
Sbjct: 391 QDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMI-KGAFESDL 449

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
              + ++N+Y + G ++ A   +V  +  E + V W +++ A   HG +         + 
Sbjct: 450 FDMSALINMYAKCGKLNIA--RLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNML 507

Query: 487 E--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           E  ++PD+   F  ++   G+AG+++D  R  R + + 
Sbjct: 508 EEGIQPDHI-TFLTILSSCGHAGQVEDGVRYFRCMTEE 544



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 204/387 (52%), Gaps = 11/387 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  +++ C  L  V  G  +  +I       +  ++S L++LYA  G I++A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + FD+M ++      WN +I+GY + GE + AI L+  M     +PD  TF  VL    
Sbjct: 65  RRFFDKMIDKDCVL--WNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISC 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              ++  G ++H   VR G  F   V N LV +Y+K   +  AR +FD +   DL+ +N 
Sbjct: 123 SEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNR 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRG 322
           M+ GY+ +G + +A  +F  MI  G  PD +  +S    LA +S L+   ++HG+++R G
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHG 242

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFE 379
           V  D+ + ++LI +Y K      AC +F+   + D+V + ++I  +     + +AL  F 
Sbjct: 243 VILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFR 302

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + +  ++P+ LTF S+L ACA L ++K+G  L   ++ K  +  +    + ++N+Y + 
Sbjct: 303 WLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYII-KNELEEKCPVGSAIMNMYAKC 361

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALL 466
           G +D A+ +I  ++  + + + W +++
Sbjct: 362 GRLDLAH-LIFGRISIKDA-ICWNSII 386


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 167/524 (31%), Positives = 283/524 (54%), Gaps = 32/524 (6%)

Query: 29  KQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT 88
           K R +K    S +R+     + +      L N +   KT + + +S+I DL  S  +   
Sbjct: 2   KVRSKKALFCSVSRLLHTERHTERQNLTTLFN-RYVDKTDVFSWNSVIADLARSGDSAEA 60

Query: 89  V-------------QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +                +F   ++ C  L  +  G + H+       + +  +SS L+ +
Sbjct: 61  LLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVM 120

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM------EEEG 189
           Y+T G +++A +VFD++  R   +  W S+I GY   G   DA++L+  +      +++ 
Sbjct: 121 YSTCGKLEDARKVFDEIPKRDIVS--WTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD--IVK 247
           +  D      V+ AC+ +    + E +H   ++ GF     V N L+D YAK G+  +  
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP-DPVAISSIL---A 303
           AR +FD+I +KD +SYNS+++ Y   G+  EAF++FR ++ N     + + +S++L   +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           ++  LRIG  +H  V+R G+E D+ +  S+I +Y K G+++ A   FD M  K+V SW +
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     H    +AL  F  M   GV P+++TFVS+L+AC+H G    G R F+ M  ++
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           G+ P +EHY CMV+L GRAG + +AY +I ++M+ +   ++W +LL AC +H NV + E 
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLI-QRMKMKPDSIIWSSLLAACRIHKNVELAEI 477

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  +LFEL+  N   + LL  IY +AGR  DVERV  ++ +RGL
Sbjct: 478 SVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 249/447 (55%), Gaps = 11/447 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +++ + T +SLL  C QL  +  G+ +H       L  +  + + L+ +YA FG +  A 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            +F+QM  R   +  WNSL++ + +  +   A+ +Y +M   GV PD  T   +    A 
Sbjct: 296 TIFNQMKVRDIVS--WNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAE 353

Query: 207 LGLIRVGEKVH-LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           LG       +H     R  F  D  + NA++DMYAK G I  AR VF+ +  KD+IS+NS
Sbjct: 354 LGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNS 413

Query: 266 MLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRR 321
           ++TGY  +GL  EA D++  M   +G  P+     SIL   S    L+ G + HG +++ 
Sbjct: 414 LITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKN 473

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
            + +D+ ++  L+ +Y K GKL  A  LF  +P +  VSWN+II  H       +A+  F
Sbjct: 474 FLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLF 533

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M+ +GV PDH+TFVSLLSAC+H G V  G+  F +M E YGI P ++HY CMV+L+GR
Sbjct: 534 KEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGR 593

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG +++A++  V+ M       VWGALL AC +H NV +  T +  L ++E +N   + L
Sbjct: 594 AGHLEKAFNF-VKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVL 652

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  IY   G  + V+ V  +  DRGL+
Sbjct: 653 LSNIYAKLGHWEGVDEVRSLARDRGLK 679



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 211/391 (53%), Gaps = 20/391 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  ++  C  L   + G K+H L+       +  I++  +  Y+ FG +  A  +FD M
Sbjct: 144 TFPPVIRACGNL---DDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNM 200

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WN++ISG+   G+  +A+ ++ +M  + V  D  T   +L  C  L  I  
Sbjct: 201 MIRDIGT--WNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIIS 258

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H+ A++ G  FD FV NAL++MYAK G++  A T+F+++  +D++S+NS+L  +  
Sbjct: 259 GVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQ 318

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEW---D 326
           +   V A  ++  M   G  PD    V+++S+ A          +HG+V RR   W   D
Sbjct: 319 NKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRC--WFLHD 376

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME- 382
           + + N++I +Y+K G +D A  +F+ +P KDV+SWNS+I  +S++   +EA+  +  M  
Sbjct: 377 IALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRY 436

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G +P+  T+VS+L+A + LG++K G +    +++ + +   +    C+V++YG+ G +
Sbjct: 437 YSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKL 495

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            +A S+  E      S V W A++    LHG
Sbjct: 496 ADALSLFYEVP--HQSSVSWNAIISCHGLHG 524



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 192/366 (52%), Gaps = 22/366 (6%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH L+  +   ++  +S+KL+  YA  G I  A   FDQ+  +  +   WNS+IS YA 
Sbjct: 61  QLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYT--WNSMISAYAR 118

Query: 172 LGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           +G +  A+  + + +    ++ D +TFP V++AC  L     G KVH   ++ GF  D +
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLD---DGRKVHCLVLKLGFECDVY 175

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           +  + +  Y++ G +  A  +FD +  +D+ ++N+M++G+  +G + EA ++F  M    
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 291 FDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
              D V ISS+L     L     G  +H + ++ G+E+DL + N+LI +Y+K G+L  A 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +F+ M  +D+VSWNS++ A  ++ +   AL  + +M   GV+PD LT VSL S  A LG
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV---- 460
           +      +   +  +      +     ++++Y + G ID A      +  FE  PV    
Sbjct: 356 NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSA------RKVFEGLPVKDVI 409

Query: 461 VWGALL 466
            W +L+
Sbjct: 410 SWNSLI 415



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 140/291 (48%), Gaps = 20/291 (6%)

Query: 188 EGVEPD--QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           +GVE +  +  F R+   C     + + +++H   V  G     F+   L++ YA  GDI
Sbjct: 35  DGVENEKREIDFNRIFLYCTK---VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDI 91

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILAN 304
             AR  FD+I  KD+ ++NSM++ Y   G    A D F   +   F   D      ++  
Sbjct: 92  PHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRA 151

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L  G +VH  VL+ G E D+ IA S I  YS+ G +  AC LFD+M  +D+ +WN++
Sbjct: 152 CGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAM 211

Query: 365 I---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I   + + K  EAL  F++M    V  D +T  SLL  C  L  +  G     V++  Y 
Sbjct: 212 ISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG-----VLIHVYA 266

Query: 422 ISPRVEH--YAC--MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           I   +E   + C  ++N+Y + G +  A   I  +M+     V W +LL A
Sbjct: 267 IKLGLEFDLFVCNALINMYAKFGELRSA-ETIFNQMKVR-DIVSWNSLLAA 315


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 248/439 (56%), Gaps = 10/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L+ C  L  +E G  +H  + T+    +   S+ L+ +YA  G +  + +VF  M
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             + + +  WNS+I+ Y + G +++A+ L F+M +  V+PD  T+  +L     LG + +
Sbjct: 378 KCKDSVS--WNSMINVYIQNGSFDEAMKL-FKMMKTDVKPDSVTYVMLLSMSTQLGDLHL 434

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H D  + GF  +  V N LVDMYAKCG++  +  VF+ +  +D+I++N+++   +H
Sbjct: 435 GKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVH 494

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
                    +   M   G  PD   + SIL   SLL   R G ++HG + + G+E D+ +
Sbjct: 495 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 554

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N LI +YSK G L  +  +F  M  KDVV+W ++I A   + +  +A+  F +ME  G+
Sbjct: 555 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 614

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PDH+ FV+++ AC+H G V+ G   F  M + Y I PR+EHYAC+V+L  R+ L+D+A 
Sbjct: 615 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 674

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I+  M  +    +WGALL AC + G+  + E  ++++ EL PD+   + L+  IY   
Sbjct: 675 DFILS-MPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAAL 733

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+ D V  + + +  RGL+
Sbjct: 734 GKWDQVRSIRKSIKARGLK 752



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 231/411 (56%), Gaps = 18/411 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-GLIDE 144
           G+   + T +S+L  C  L +VE G  +H LI    ++K+  +++ LL +Y  F GLID 
Sbjct: 211 GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID- 269

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
             ++FD+M  R A +  WN++I GY+++G YE++I L+ +M  +  +PD  T   +L+AC
Sbjct: 270 GRRIFDKMVLRDAVS--WNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQAC 326

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG +  G+ VH   +  G+  D    N L++MYAKCG+++ ++ VF  +  KD +S+N
Sbjct: 327 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 386

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           SM+  YI +G   EA  +F+ M+     PD V    +L+ ++    L +G ++H  + + 
Sbjct: 387 SMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM 445

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--HSKD-HEALIYF 378
           G   ++ ++N+L+ +Y+K G++  +  +F++M  +D+++WN+II +  HS+D +  L   
Sbjct: 446 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 505

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M  +GV PD  T +S+L  C+ L + + G+ +   +  K G+   V     ++ +Y +
Sbjct: 506 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF-KLGLESDVPVGNVLIEMYSK 564

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            G +  ++   V K+      V W AL+ AC ++G    G+ A +   E+E
Sbjct: 565 CGSLRNSFQ--VFKLMKTKDVVTWTALISACGMYGE---GKKAVRAFGEME 610



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 181/335 (54%), Gaps = 9/335 (2%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           KLH LI T  L  +   S+KL+  YA F     +  VF ++++ +   + WNS+I     
Sbjct: 34  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYLWNSIIRALTH 92

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G + +A++LY + +   ++PD +TFP V+ ACAGL    + + +H   +  GFG D ++
Sbjct: 93  NGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYI 152

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NAL+DMY +  D+ KAR VF+ +  +D++S+NS+++GY  +G   EA +I+      G 
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 212

Query: 292 DPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   +SS+L     L     G  +HG + + G++ D+ + N L+ +Y K   L     
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +FD M  +D VSWN++I  +S+     E++  F +M  +   PD LT  S+L AC HLG 
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGD 331

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ++ G+ +   M+   G          ++N+Y + G
Sbjct: 332 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCG 365


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 241/438 (55%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C + +       +H L+      +   + + L+  Y   G      +VFD+M
Sbjct: 158 TLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEM 217

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S +      W ++ISG ++   YE+++ L+ +M +  V+P+  T+   L AC+GL  IR 
Sbjct: 218 SEKNVVT--WTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIRE 275

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H    + G  FD  + +AL+DMY+KCG +  A  +F+     D +S   +L G   
Sbjct: 276 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 335

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
           +G   E+  +F  M+ NG   DP  IS+IL    +   L +G Q+H  ++++    +  +
Sbjct: 336 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFV 395

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N LI +YSK G LD +  +F  MPQ++ VSWNS+I A   H     AL  +E+M  +GV
Sbjct: 396 NNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGV 455

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P  +TF+SLL ACAH+G V+ G      M + YGI PR+EHYAC+V++ GRAGL++EA 
Sbjct: 456 WPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAK 515

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E++  +   +VW ALL AC +HGN  MG+ AA +LF   P++   + LL  IY + 
Sbjct: 516 KFI-ERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSE 574

Query: 507 GRLDDVERVERMLVDRGL 524
           G+  +  R  + + D G+
Sbjct: 575 GKWKERARTIKKMKDMGV 592



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 217/452 (48%), Gaps = 41/452 (9%)

Query: 41  NRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLET 100
           N    + + P SSP   L  Q  + +T   A++ +                   + LL  
Sbjct: 11  NSFLPYCTSPVSSPLKTLILQNPYSETSKFAINQV-----------------DISFLLSL 53

Query: 101 CYQLKAVEHGIKLHRLIPTNL----------LRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           C +   +  G  LH  I  N           LR    + + LL +Y+  G + +A +VFD
Sbjct: 54  CGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFD 113

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACAGLGL 209
            M  +   +  WNS ISG    G+ E    ++ Q+ E G+ + DQ T   VL AC     
Sbjct: 114 HMPMKDTIS--WNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEF 171

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
             V + +H     +G+  +  V NAL+  Y +CG     R VFD +  K+++++ ++++G
Sbjct: 172 CYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISG 231

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWD 326
                   E+  +F  M     DP+ +  +SS++A + L  +R G Q+HG V + GV +D
Sbjct: 232 LSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFD 291

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMER 383
           LCI ++L+ +YSK G L+ A  +F+   + D VS   I+   ++   + E++  F +M +
Sbjct: 292 LCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVK 351

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLI 442
           +GV+ D     ++L       S+ +G+++ S++++K +G +  V +   ++N+Y + G +
Sbjct: 352 NGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNN--GLINMYSKCGDL 409

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           D++  +       + + V W +++ A   HGN
Sbjct: 410 DDSIKIFCWMP--QRNSVSWNSMIAAFARHGN 439


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/401 (36%), Positives = 229/401 (57%), Gaps = 38/401 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN+ +  +AE     DAI+L++++ E  + PD +T   VLKAC+ L  +R G+ VH    
Sbjct: 81  WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVE 140

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN----------------- 264
           + G   + F+ N +V +YA CG+I  AR VFD++  +D+I++N                 
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYK 200

Query: 265 --------------SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
                         SM+ GY   G   EA D+F  M   G  P+ V + ++L   A+   
Sbjct: 201 LFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGN 260

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH- 366
           L +G ++H +  R G E ++ + N+LI +Y K G L+ AC +FD+M ++ VVSW+++I  
Sbjct: 261 LVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAG 320

Query: 367 --AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
             AH +  +AL  F +M   GV P+ +TF+ +L AC+H+G V+ G + F+ M   YGI P
Sbjct: 321 LAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
           R+EHY CMV+L+ RAGL+ EA+  I+  M    + VVWGALL  C +H N+ + E A + 
Sbjct: 381 RIEHYGCMVDLFSRAGLLQEAHEFIM-NMPIAPNGVVWGALLGGCKVHKNIKLAEEATRH 439

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L +L+P N+  + +L  IY  AGR +DV RV +++ DRG++
Sbjct: 440 LSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVK 480



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 155/325 (47%), Gaps = 35/325 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T + +L+ C +L  V +G  +H  +    L+ N  + + ++ LYA  G I  A +VFD+M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
             R    +                              W S+I GYA+ G+ ++AI L+ 
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +ME+ G+ P++ T   VL ACA +G + +G ++H  + R G+  +  V N L+DMY KCG
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            +  A  +FD +  + ++S+++M+ G   HG   +A  +F  MI  G  P+ V    IL 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 304 NAS---LLRIGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDV 358
             S   ++  G +    + R  G+   +     ++ ++S+ G L +A     +MP   + 
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414

Query: 359 VSWNSIIHAHSKDHEALIYFEQMER 383
           V W +++    K H+ +   E+  R
Sbjct: 415 VVWGALL-GGCKVHKNIKLAEEATR 438



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 40/263 (15%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A+ +F  +   ++  +N+ L  +       +A  +F  +      PD    S +L   S 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 308 L---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN-- 362
           L   R G  VHG+V + G++ ++ + N ++ +Y+  G++  A  +FD MPQ+DV++WN  
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 363 -----------------------------SIIHAHS---KDHEALIYFEQMERDGVLPDH 390
                                        S+I  ++   K  EA+  F +ME  G+LP+ 
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T V++L ACA +G++ +G R+      + G    +     ++++Y + G +++A   I 
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDA-CRIF 303

Query: 451 EKMEFEASPVVWGALLYACYLHG 473
           + ME E + V W A++     HG
Sbjct: 304 DNME-ERTVVSWSAMIAGLAAHG 325



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 10/245 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  ++L  C  +  +  G ++H     +   KN  + + L+ +Y   G +++A
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD M  RT  +  W+++I+G A  G  EDA+AL+ +M   GV+P+  TF  +L AC+
Sbjct: 300 CRIFDNMEERTVVS--WSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACS 357

Query: 206 GLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKART-VFDRIGNKDLISY 263
            +G++  G K      R +G          +VD++++ G + +A   + +     + + +
Sbjct: 358 HMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVW 417

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP----VAISSILANASLLRIGAQVHGWVL 319
            ++L G   H  +  A +  R   L+  DP      V +S+I A A      A+V   + 
Sbjct: 418 GALLGGCKVHKNIKLAEEATRH--LSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMR 475

Query: 320 RRGVE 324
            RGV+
Sbjct: 476 DRGVK 480


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 247/462 (53%), Gaps = 11/462 (2%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +AL+   Q L S    G +    TF    ++C  L     G +LH  +          + 
Sbjct: 39  EALNLYCQMLAS----GDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQ 94

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +Y     I  A +VFD+  +    A  +N+LI+GY+    + DA+ L+ QM +EG
Sbjct: 95  TSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEG 154

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V  +  T   ++  CAG   +  G  +H  +VRFG   D  V N L+ MY +CG +  AR
Sbjct: 155 VSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFAR 214

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL- 308
            +FD +  K LI++N+M++GY  +GL     D++R M   G  PDPV +  +L++ + L 
Sbjct: 215 KLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLG 274

Query: 309 --RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
               G +V   +   G  ++  + N+LI +Y++ G L +A  +FD M +K+V+SW +II 
Sbjct: 275 AHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIA 334

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               H +   A+  F++M     LPD   FVS+LSAC+H G  + G   F+ M   YG+ 
Sbjct: 335 GYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQ 394

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P  EHY+C+V+L GRAG ++EA  +I   M  E    VWGALL AC +H NV + E A +
Sbjct: 395 PGPEHYSCVVDLLGRAGRLEEARKLI-GSMSVEPDGAVWGALLGACKIHRNVELAELAFE 453

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           K+ E EP N   + LL  I+  AG ++ + RV  M+ +R L+
Sbjct: 454 KVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLK 495



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 188/351 (53%), Gaps = 19/351 (5%)

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + N TA    WN+ +   A    +++A+ LY QM   G  P+ FTFP   K+CA L L  
Sbjct: 17  LQNTTA---SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPL 73

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDL-ISYNSMLTG 269
            G ++H   ++ G   + FV  +L+ MY KC  I  AR VFD    +++L + YN+++ G
Sbjct: 74  AGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAG 133

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           Y  +    +A  +FR M   G   + V +  ++   A    L  G  +H   +R G++ D
Sbjct: 134 YSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGD 193

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIYFEQMER 383
           L + N L+ +Y + G +D A  LFD MP+K +++WN++I  ++++  A   L  + +ME 
Sbjct: 194 LSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEF 253

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGRAGLI 442
            G++PD +T V +LS+CAHLG+   G  +   + +  +G +P +++   ++N+Y R G +
Sbjct: 254 TGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNL 311

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
            +A + I + M  E + + W A++    +HG    GE A Q   E+   +E
Sbjct: 312 VKARA-IFDGMT-EKNVISWTAIIAGYGMHGQ---GELAVQLFDEMISSDE 357


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 244/433 (56%), Gaps = 10/433 (2%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           ++ C  L  +E+G+ +H L   N L K+  ++  L+ +YA FG ++ A +VFD+M  R +
Sbjct: 116 IKACVGLGLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNS 175

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
               W  L+ GY +  +  +   L++ M + G+  D  T   ++KAC  +   + G+ VH
Sbjct: 176 VL--WGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVH 233

Query: 218 LDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
             ++R  F    G++  +++DMY KC  +  AR +F+    ++++ + ++++G+      
Sbjct: 234 GLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERA 293

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSL 333
           VEA D+FR M+     P+   +++IL + S L   R G  VHG+++R G+E D     S 
Sbjct: 294 VEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSF 353

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
           I  Y++ G +  A  +FD MP+++V+SW+S+I+A   +    EAL  F+ M+   ++P+ 
Sbjct: 354 IDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNS 413

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFVSLLSAC+H G+VK G + F  M   YG+ P  EHYACMV+L GRAG I EA S I 
Sbjct: 414 VTFVSLLSACSHSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFI- 472

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + M  +     WGALL AC +H  V +    A+KL  +EPD    + LL  IY +AG  +
Sbjct: 473 DNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLLSNIYADAGMWE 532

Query: 511 DVERVERMLVDRG 523
            V  V   +  +G
Sbjct: 533 MVNCVRHKMGIKG 545



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 213/462 (46%), Gaps = 45/462 (9%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           +LL    Q K + H  ++H  +  +  +    + S L   Y     +D A   FD++   
Sbjct: 9   ALLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCW 68

Query: 156 TAFAFPWNSLISGYAELGE--YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                 WN+++SGY++     Y D + LY +M       D F     +KAC GLGL+  G
Sbjct: 69  KRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  A++ G   D +V  +LV+MYA+ G +  A+ VFD +  ++ + +  ++ GY+ +
Sbjct: 129 MLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKY 188

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDLCI 329
               E F +F  M   G   D + +  ++    N S  + G  VHG  +RR  ++    +
Sbjct: 189 SKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYL 248

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV 386
             S+I +Y K   LD A  LF+   +++VV W ++I   +K     EA+  F QM  + +
Sbjct: 249 EASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESI 308

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--------------------------- 419
           LP+H T  ++L +C+ LGS++ G+ +   M+                             
Sbjct: 309 LPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARK 368

Query: 420 -YGISPR--VEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGN 474
            + + P+  V  ++ M+N +G  GL +EA      ++      + V + +LL AC   GN
Sbjct: 369 VFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGN 428

Query: 475 VCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDVE 513
           V  G    + +   + L P+ EH +  ++ + G AG + + +
Sbjct: 429 VKEGWKQFESMTRDYGLVPEEEH-YACMVDLLGRAGEIGEAK 469



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 13/322 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDE 144
           G+ +   T   L++ C  + A + G  +H L I  + + ++  + + ++ +Y    L+D 
Sbjct: 205 GLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDN 264

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++F+    R      W +LISG+A+     +AI L+ QM  E + P+  T   +L +C
Sbjct: 265 ARKLFETSVERNVVM--WTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSC 322

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +R G+ VH   +R G   D     + +D YA+CG+I  AR VFD +  +++IS++
Sbjct: 323 SSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWS 382

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           SM+  +  +GL  EA D F  M      P+ V   S+L+  S    G    GW     + 
Sbjct: 383 SMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACS--HSGNVKEGWKQFESMT 440

Query: 325 WDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHAHSKDHEALIY 377
            D  +         ++ +  + G++ +A    D+MP K + S W +++ A     E  + 
Sbjct: 441 RDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLA 500

Query: 378 FEQMER-DGVLPDHLTFVSLLS 398
            E  E+   + PD  +   LLS
Sbjct: 501 GEIAEKLLSMEPDESSVYVLLS 522


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 253/438 (57%), Gaps = 10/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F  +L+ C  L A+E G ++H  I  +    +  + + L+ LYA  G I  A+ VF ++
Sbjct: 175 SFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL 234

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +RT  +  W S+ISGYA+ G+  +A+ ++ +M +  V PD      VL+A   +  +  
Sbjct: 235 VDRTIVS--WTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H   ++ G   +  +L +L  +YAKCG ++ AR  F+++ N  LI +N+M++GY+ 
Sbjct: 293 GKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVK 352

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAI-SSILANASL--LRIGAQVHGWVLRRGVEWDLCI 329
           +G   EA ++FR M      PD + + SSI A A +  L +   +  ++       D+ +
Sbjct: 353 NGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIV 412

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             SLI  Y+K G +D A ++FD +P KDVV W++++     H +  E++I F  M + GV
Sbjct: 413 NTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGV 472

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV LL+AC + G V+ G  LF  M   YGI PR +HYAC+V+L GRAG +D AY
Sbjct: 473 SPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAY 531

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           + ++  M  E    VWGALL AC +H +V +GE AA++LF L+P N  ++  L  +Y ++
Sbjct: 532 NFVM-NMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASS 590

Query: 507 GRLDDVERVERMLVDRGL 524
              D V +V  ++ ++GL
Sbjct: 591 CLWDCVAKVRVLMREKGL 608



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 187/354 (52%), Gaps = 19/354 (5%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           +KL+   +  G +  A ++FD+  +   F   WN+++  Y+  G +  AI +Y +M+   
Sbjct: 111 AKLVNKASNIGEVSCARKLFDKFPDPDVFL--WNAIVRCYSRHGFFGHAIEMYARMQVAC 168

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD F+FP VLKAC+ L  + +G +VH    R GF  D FV N LV +YAKCG+IV+A 
Sbjct: 169 VSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRAN 228

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            VF R+ ++ ++S+ S+++GY  +G  +EA  IF  M      PD +A+ S+L    +  
Sbjct: 229 AVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVE 288

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G  +HG V++ G+E +  +  SL  +Y+K G +  A   F+ +    ++ WN++I 
Sbjct: 289 DLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMIS 348

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            + K+    EA+  F  M+   + PD +T  S ++ACA +GS+++  R     +      
Sbjct: 349 GYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELA-RWMDEYISMSEFR 407

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHG 473
             V     +++ Y + G +D A      +  F+  P    VVW A++    LHG
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMA------RFVFDRIPDKDVVVWSAMMVGYGLHG 455



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 145/286 (50%), Gaps = 13/286 (4%)

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           E   +PD+F    +  +     L ++  K+ +  +++G    GF++  LV+  +  G++ 
Sbjct: 69  ESTFKPDKFYASLIDDSIHKTHLNQIYAKLLVTGLQYG----GFLIAKLVNKASNIGEVS 124

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR +FD+  + D+  +N+++  Y  HG    A +++  M +    PD  +   +L   S
Sbjct: 125 CARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACS 184

Query: 307 ---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
               L +G +VHG + R G E D+ + N L+ +Y+K G++ +A  +F  +  + +VSW S
Sbjct: 185 ALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTS 244

Query: 364 IIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           II  ++++    EAL  F +M +  V PD +  VS+L A   +  ++ G+ +   ++ K 
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVI-KM 303

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           G+    +    + +LY + G +  A  +   ++E   S + W A++
Sbjct: 304 GLECEFDLLISLTSLYAKCGHVMVA-RLFFNQVE-NPSLIFWNAMI 347


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 257/429 (59%), Gaps = 9/429 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL++  + +A   G+  H  I    LR +   S+ L+ +Y+  GL++ A ++FD+M  R+
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN+++  + + G+ E A+ L+ QM++EG+   +FT   V+ ACA    +   +++
Sbjct: 113 LVS--WNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQL 170

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  A++     + FV  AL+D+YAKCG +  A  VF+ +  +  ++++SM+ GY+ + L 
Sbjct: 171 HGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELY 230

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSL 333
            EA  +F      G + +   ISS L+  +       G QV   + + G+  ++ + +SL
Sbjct: 231 EEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSL 290

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           I +Y+K G +++A  +F  + +K+VV WN+++     H +  EA+IYFE+M++ G+ P+ 
Sbjct: 291 IDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNE 350

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T++S+L+AC+HLG V+ G + F +M+  + +SP V HY+CMV++ GRAGL+ EA  +I 
Sbjct: 351 ITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLI- 409

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           ++M F+A+  +WG+LL +C ++ N+   E AA+ LFE+EP N  N  LL  IY    R +
Sbjct: 410 DRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWE 469

Query: 511 DVERVERML 519
           +V R   +L
Sbjct: 470 EVARARNLL 478



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 146/287 (50%), Gaps = 7/287 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI+    T +S++  C     V    +LH       L  N  + + LL +YA  GL+ 
Sbjct: 141 KEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 200

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF+ M  R+     W+S+++GY +   YE+A+ L+ + +  G+E +QFT    L A
Sbjct: 201 DASLVFECMPERSDVT--WSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSA 258

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    +  G++V     + G G + FV+++L+DMYAKCG I +A  VF  +  K+++ +
Sbjct: 259 CAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLW 318

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR 320
           N+ML+G+  H   +EA   F  M   G  P+ +   S+L   S   L+  G +    ++R
Sbjct: 319 NAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIR 378

Query: 321 -RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
              V  ++   + ++ +  + G L +A  L D MP     S W S++
Sbjct: 379 VHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLL 425


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 219/367 (59%), Gaps = 9/367 (2%)

Query: 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
           SGY       + I +Y +M  + V P++FT+P +++AC     I  G+++H   ++FGFG
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL--ISYNSMLTGYIHHGLLVEAFDIFR 284
            DGF LN L+ MY     + +AR VFD +  +D   +S+N+M+  Y+    L EAF +F 
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 285 GMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M L     D    +S+L+  +    L  G  +HG++ + G+E D  +A ++I +Y K G
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 246

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            L++A  +F+ +PQK + SWN +I     H K   A+  F++MER+ V PD +TFV++LS
Sbjct: 247 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 306

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           ACAH G V+ G+  F  M E  G+ P +EH+ CMV+L GRAGL++EA  +I E M     
Sbjct: 307 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE-MPVNPD 365

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
             V GAL+ AC +HGN  +GE   +K+ ELEP N   + LL  +Y +AGR +DV +V ++
Sbjct: 366 AGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKL 425

Query: 519 LVDRGLE 525
           + DRG++
Sbjct: 426 MNDRGVK 432



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 159/357 (44%), Gaps = 47/357 (13%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  L+  C    A+E G ++H  +       +    + L+ +Y  F  +++A +VFD M
Sbjct: 96  TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 155

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++I+ Y +     +A AL+ +M  E V  D+F    +L AC GLG +  
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H    + G   D  +   ++DMY KCG + KA  VF+ +  K + S+N M+ G   
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV-----LRRGVE 324
           HG    A ++F+ M      PD +   ++L   A++ L+  G     ++     L+ G+E
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
              C+ + L     + G L++A  L + MP                              
Sbjct: 336 HFGCMVDLL----GRAGLLEEARKLINEMP------------------------------ 361

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAG 440
            V PD     +L+ AC   G+ ++GE++   ++E   + P     Y  + NLY  AG
Sbjct: 362 -VNPDAGVLGALVGACRIHGNTELGEQIGKKVIE---LEPHNSGRYVLLANLYASAG 414


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 258/442 (58%), Gaps = 12/442 (2%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           E   +LL+ C  L  +  G  +H L+  +  R +  + + LL LYA  G +  A ++FD+
Sbjct: 16  EICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDE 75

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           MS+R      W +LI+GY++    +DA+ L  +M   G++P+QFT   +LKA +G+G   
Sbjct: 76  MSSRDVVT--WTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTD 133

Query: 212 V--GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           V  G ++H   +R+G+  + +V  A++DMYA+C  + +A+ +FD + +K+ +S+N+++ G
Sbjct: 134 VLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAG 193

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWD 326
           Y   G   +AF +F  M+     P     SS+L A AS+  L  G  VH  +++ G +  
Sbjct: 194 YARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV 253

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
             + N+L+ +Y+K G ++ A  +FD + ++DVVSWNS++  +S+      AL  FE+M R
Sbjct: 254 AFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR 313

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
             + P+ +TF+ +L+AC+H G +  G   F +M +KY + P++ HY  MV+L GRAG +D
Sbjct: 314 TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMM-KKYNVEPQISHYVTMVDLLGRAGHLD 372

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
            A   I E M  + +  VWGALL AC +H N+ +G  AA+ +FEL+        LL  IY
Sbjct: 373 RAIQFISE-MPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIY 431

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
             AGR +D  +V +M+ + G++
Sbjct: 432 ALAGRWNDAAKVRKMMKESGVK 453



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           G+     T ASLL+    + + +   G +LH L        N  +S  +L +YA    ++
Sbjct: 111 GLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLE 170

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA  +FD M ++   +  WN+LI+GYA  G+ + A  L+  M  E V+P  FT+  VL A
Sbjct: 171 EAQLIFDVMVSKNEVS--WNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G +  G+ VH   +++G     FV N L+DMYAK G I  A+ VFDR+  +D++S+
Sbjct: 229 CASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSW 288

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NSMLTGY  HGL   A   F  M+     P+ +    +L   ++A LL  G      + +
Sbjct: 289 NSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK 348

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA 367
             VE  +    +++ +  + G LD+A      MP K   + W +++ A
Sbjct: 349 YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGA 396


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 227/399 (56%), Gaps = 38/399 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN+ +  +AE     DAI+L++++ E  + PD +T   VLKAC+ L  +R G+ VH    
Sbjct: 81  WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVE 140

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN----------------- 264
           + G   + F+ N +V +YA CG+I  AR VFD++  +D+I++N                 
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYK 200

Query: 265 --------------SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
                         SM+ GY   G   EA D+F  M   G  P+ V + ++L   A+   
Sbjct: 201 LFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGN 260

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH- 366
           L +G ++H +  R G E ++ + N+LI +Y K G L+ AC +FD+M ++ VVSW+++I  
Sbjct: 261 LVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAG 320

Query: 367 --AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
             AH +  +AL  F +M   GV P+ +TF+ +L AC+H+G V+ G + F+ M   YGI P
Sbjct: 321 LAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
           R+EHY CMV+L+ RAGL+ EA+  I+  M    + VVWGALL  C +H NV + E A + 
Sbjct: 381 RIEHYGCMVDLFSRAGLLQEAHEFIM-NMPIAPNGVVWGALLGGCKVHKNVKLAEEATRH 439

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           L +L+P N+  + +L  IY  AGR +DV RV +++ DRG
Sbjct: 440 LSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 29/243 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T + +L+ C +L  V +G  +H  +    L+ N  + + ++ LYA  G I  A +VFD+M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
             R    +                              W S+I GYA+ G+ ++AI L+ 
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +ME+ G+ P++ T   VL ACA +G + +G ++H  + R G+  +  V N L+DMY KCG
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            +  A  +FD +  + ++S+++M+ G   HG   +A  +F  MI  G  P+ V    IL 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 304 NAS 306
             S
Sbjct: 355 ACS 357



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 40/263 (15%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A+ +F  +   ++  +N+ L  +       +A  +F  +      PD    S +L   S 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 308 L---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN-- 362
           L   R G  VHG+V + G++ ++ + N ++ +Y+  G++  A  +FD MPQ+DV++WN  
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 363 -----------------------------SIIHAHS---KDHEALIYFEQMERDGVLPDH 390
                                        S+I  ++   K  EA+  F +ME  G+LP+ 
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T V++L ACA +G++ +G R+      + G    +     ++++Y + G +++A   I 
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDA-CRIF 303

Query: 451 EKMEFEASPVVWGALLYACYLHG 473
           + ME E + V W A++     HG
Sbjct: 304 DNME-ERTVVSWSAMIAGLAAHG 325



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  ++L  C  +  +  G ++H     +   KN  + + L+ +Y   G +++A
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD M  RT  +  W+++I+G A  G  EDA+AL+ +M   GV+P+  TF  +L AC+
Sbjct: 300 CRIFDNMEERTVVS--WSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACS 357

Query: 206 GLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKA 248
            +G++  G K      R +G          +VD++++ G + +A
Sbjct: 358 HMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEA 401


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 262/521 (50%), Gaps = 87/521 (16%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G      T  ++L +C  ++A   G K+H  +    L     +++ +L +Y   G  
Sbjct: 339 VSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV------------ 190
           + A  VF++M  R+  +  WN ++S Y   G  E A++++  M E  +            
Sbjct: 399 ETARAVFERMQVRSVSS--WNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQ 456

Query: 191 --------------------EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
                               EPD FT   VL ACA L ++++G+++H   +R G      
Sbjct: 457 NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQ 516

Query: 231 VLNALVDMYAKCG---------------------------------DIVKARTVFDRIGN 257
           ++NAL+  YAK G                                 D  +AR +FD + N
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNN 576

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQV 314
           +D+I++ +M+ GY  +G   EA ++FR MIL G +P+   ++++L A ASL  L  G Q+
Sbjct: 577 RDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQI 636

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKL-------DQACWLFDHMPQKDVVSWNSIIHA 367
           H   +R   E  + ++N++I VY++ G +       DQ CW      +K+ ++W S+I A
Sbjct: 637 HCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICW------RKETITWTSMIVA 690

Query: 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
              H    +A++ FE+M R GV PDH+T+V +LSACAH G V  G+R +  M  ++GI P
Sbjct: 691 MAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVP 750

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
           ++ HYACMV+L+ RAGL+ EA+  I ++M      VVWG+LL AC +  N  + E AA K
Sbjct: 751 QMSHYACMVDLHARAGLLTEAHEFI-QRMPVAPDTVVWGSLLAACRVRKNADLAELAAGK 809

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  ++P N   +  L  +Y   GR +D  R+ ++  D+G++
Sbjct: 810 LLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVK 850



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 218/480 (45%), Gaps = 87/480 (18%)

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           R+N    + LL LYA  G + +AH VF +M +R A +  W  +I G    G + DA+  +
Sbjct: 278 RRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVS--WTIMIVGLNRSGRFWDAVKTF 335

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
             M  EG  P QFT   VL +CA +    VG KVH   V+ G      V N+++ MY KC
Sbjct: 336 LDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKC 395

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI--------------- 287
           GD   AR VF+R+  + + S+N M++ Y H G +  A  +F  M+               
Sbjct: 396 GDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYN 455

Query: 288 LNGFD-----------------PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
            NG D                 PD   ++S+L   AN  +L++G Q+H ++LR G+    
Sbjct: 456 QNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSS 515

Query: 328 CIANSLIVVYSKDGKLD---------------------------------QACWLFDHMP 354
            I N+LI  Y+K G ++                                 QA  +FD M 
Sbjct: 516 QIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMN 575

Query: 355 QKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            +DV++W ++I   H + ++ EA+  F  M   G  P+  T  ++LSACA L  +  G++
Sbjct: 576 NRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQ 635

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +    +        V     ++ +Y R+G +  A   + +++ +    + W +++ A   
Sbjct: 636 IHCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLA-RRVFDQICWRKETITWTSMIVAMAQ 693

Query: 472 HGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDRGL 524
           HG   +GE A   LFE      ++PD+   +  ++    +AG +D  +R  E+M  + G+
Sbjct: 694 HG---LGEQAVV-LFEEMVRVGVKPDHI-TYVGVLSACAHAGFVDKGKRYYEQMQNEHGI 748



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 3/199 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  ++   S +  G    + T A++L  C  L  +++G ++H     +L  ++  +S+ +
Sbjct: 596 DEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAI 655

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G +  A +VFDQ+  R      W S+I   A+ G  E A+ L+ +M   GV+P
Sbjct: 656 ITVYARSGSVPLARRVFDQICWRKE-TITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKP 714

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAV-RFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           D  T+  VL ACA  G +  G++ +       G          +VD++A+ G + +A   
Sbjct: 715 DHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEF 774

Query: 252 FDRIG-NKDLISYNSMLTG 269
             R+    D + + S+L  
Sbjct: 775 IQRMPVAPDTVVWGSLLAA 793


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 254/452 (56%), Gaps = 13/452 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI     TF++ L+ C  L A+E G+++H             + + L+ +Y+  G I+
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVL 201
           EA +VF  M  R+  +  WN++I+GY   G    A+A +  M+E  ++  PD+FT   +L
Sbjct: 523 EAEKVFRWMVGRSLIS--WNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLL 580

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGF--DGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           KAC+  G+I  G+++H   VR GF       +  +LVD+Y KCG++  AR  FD+I  K 
Sbjct: 581 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKT 640

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           +IS++S++ GY   G  VEA  +F+ +       D   +SSI+   A+ +LL+ G Q+  
Sbjct: 641 MISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQA 700

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHE 373
            V++     +  ++NSL+ +Y K G +D+A   F  M  KDV+SW  +I  + K     +
Sbjct: 701 LVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKK 760

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  F +M R  + PD + ++++LSAC+H G +K GE LFS ++E  GI PRVEHYAC+V
Sbjct: 761 AVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVV 820

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GRAG + EA   +V+ M  + +  +W  LL  C +HG++ +G+   + L  ++  N 
Sbjct: 821 DLLGRAGRLKEA-KHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNP 879

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            N+ ++  +YG AG  ++      +   +GL+
Sbjct: 880 ANYVMMSNLYGQAGYWNEQGNARELGSIKGLQ 911



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 233/485 (48%), Gaps = 57/485 (11%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S  Q+ +   TE  + +LE CY L+ +       RL  + L   N   S+ L+ +Y  
Sbjct: 360 LCSFCQHLLHSPTEEDSHVLENCYVLEFIIFTNSNFRLSGSGL---NLITSNYLIDMYCK 416

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
                 A++VFD M  R   +  W +L+SG+   G+   +++L+ +M  +G+ P++FTF 
Sbjct: 417 CREQLIAYKVFDSMPERNVVS--WTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFS 474

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
             LKAC  L  +  G ++H   ++ GF     V N+LVDMY+KCG I +A  VF  +  +
Sbjct: 475 TNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGR 534

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF---DPDPVAISSILANAS---LLRIGA 312
            LIS+N+M+ GY+H G    A   F GM+        PD   ++S+L   S   ++  G 
Sbjct: 535 SLISWNAMIAGYVHAGYGSRALATF-GMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGK 593

Query: 313 QVHGWVLRRGVEW--DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           Q+HG+++R G        I  SL+ +Y K G L  A   FD + +K ++SW+S+I  +++
Sbjct: 594 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQ 653

Query: 371 DH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRV 426
           +    EA+  F++++      D     S++   A    ++ G+++ +++V+   G+   V
Sbjct: 654 EGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSV 713

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVE---------------------------------KM 453
            +   +V++Y + GL+DEA     E                                 + 
Sbjct: 714 SN--SLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRH 771

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLD 510
             E   V + A+L AC   G +  GE    KL E   ++P  EH +  ++ + G AGRL 
Sbjct: 772 NIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEH-YACVVDLLGRAGRLK 830

Query: 511 DVERV 515
           + + +
Sbjct: 831 EAKHL 835


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 250/438 (57%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F S+L      + V+ G ++H ++  N + +   + + L+ +YA  G ++ +  +F+  
Sbjct: 215 VFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMC 274

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S++ A    W++LI+GY++ G+   A+ L+ +M   G  P +FT   VLKAC+ +  I  
Sbjct: 275 SDKNAIT--WSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEE 332

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++ H   ++ G+    +   ALVDMYAK G    AR  FD +   DL+ + S++ GY+ 
Sbjct: 333 GKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQ 392

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   EA  ++  M +    P+ + ++S+L   +N + L  G Q+H   ++ G+  +L I
Sbjct: 393 NGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSI 452

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            ++L  +Y+K G L++   +F  M Q+D+VSWN++I   S++    EAL  FE+M  +G 
Sbjct: 453 RSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGT 512

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PDH+TFV++LSAC+H+G VK G   F++M +++ + PRVEHYACMV++  RAG ++EA 
Sbjct: 513 KPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAK 572

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E    +    +W  LL AC  H N  +G  A +KL EL       + LL  IY   
Sbjct: 573 EFI-ESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAM 631

Query: 507 GRLDDVERVERMLVDRGL 524
           GRL DV RV RM+  RG+
Sbjct: 632 GRLADVVRVRRMMKVRGV 649



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 187/366 (51%), Gaps = 13/366 (3%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           Q  +F +LL      K+++ G  LH  +I    L     +++ L++ YA  G +  A  V
Sbjct: 6   QNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLV 65

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYED--AIALYFQMEEEGVEPDQFTFPRVLKACA- 205
           F+ + ++   ++  N LI G +  G       + L+ +M    + PD  TFP V  A A 
Sbjct: 66  FENLKHKNVVSY--NCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAAL 123

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG      +VH+  ++     D FV ++LV+ Y K G + +AR +FDR+  ++L+S+ +
Sbjct: 124 NLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTT 183

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRG 322
           M++GY    +  EA  +F  M L   + +    +S+L+       +  G QVH  V++ G
Sbjct: 184 MISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNG 243

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFE 379
           V   + + N+L+ +Y+K G L+ +  LF+    K+ ++W+++I  +S+    H+AL  F 
Sbjct: 244 VLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFS 303

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G +P   T V +L AC+ + +++ G++    ++ K G   ++     +V++Y + 
Sbjct: 304 KMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLL-KSGYETQIYTATALVDMYAKF 362

Query: 440 GLIDEA 445
           G   +A
Sbjct: 363 GFTGDA 368


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 160/476 (33%), Positives = 257/476 (53%), Gaps = 27/476 (5%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL-LRKNKGISSKLLR 134
           I+ L   V  G+     TFAS L  C QL+ +  G ++H  +  +  L  N  ++S L+ 
Sbjct: 254 IEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVD 313

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPD 193
           +YA+   +  A  VFD +         WN++I GYA+ G  EDA+ L+ +ME E GV P 
Sbjct: 314 MYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPS 373

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           + T   VL +CA        E VH   V+ G   + FV NAL+D+YA+ GD+  AR +F 
Sbjct: 374 ETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFA 433

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-------------LNGFDPDPV---- 296
            I  +D++S+N+++TG +  G + +AF + R M              + G D +PV    
Sbjct: 434 TIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNN 493

Query: 297 -AISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
             + ++L   ++L     G ++HG+ +R  ++ D+ + ++L+ +Y+K G L  +  +FD 
Sbjct: 494 ITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDR 553

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKV 408
           +P+++V++WN +I A   H    EA+  F++M   D   P+ +TF++ L+AC+H G V  
Sbjct: 554 LPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDR 613

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G  +F  M   +G+ P  + +AC V++ GRAG +DEAY +I      E     W + L A
Sbjct: 614 GLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGA 673

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C LH NV +GE AA++LFELEPD   ++ LL  IY  AG  +    V   +  RG+
Sbjct: 674 CRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGV 729



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 232/499 (46%), Gaps = 64/499 (12%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQL-KAVEHGIKLHRLIPTN--LLRKN 125
           L ALD+    L   +  G  + + T  S+L  C  L + +  G + H     N  L    
Sbjct: 142 LPALDA----LRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDE 197

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRT---AFAFPWNSLISGYAELGEYEDAIALY 182
           +   + LL +YA  GL+D+A  +F  +            WN+++S   + G   +AI + 
Sbjct: 198 RFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVL 257

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAK 241
           + M   GV PD  TF   L AC+ L ++ +G ++H   ++      + FV +ALVDMYA 
Sbjct: 258 YDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYAS 317

Query: 242 CGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAI 298
              +  AR VFD +  G + L  +N+M+ GY   GL  +A ++F  M    G  P    I
Sbjct: 318 HERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTI 377

Query: 299 SSILANASLLRIGA---QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           + +L + +     A    VHG+V++RG+  +  + N+L+ +Y++ G +D A W+F  +  
Sbjct: 378 AGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEP 437

Query: 356 KDVVSWNSII-----HAHSKDHEALI--------YFEQMERDG--------VLPDHLTFV 394
           +DVVSWN++I       H +D   L+        + +    DG        V+P+++T +
Sbjct: 438 RDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLM 497

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           +LL  CA L +   G+ +    V ++ +   V   + +V++Y + G +  A S  V    
Sbjct: 498 TLLPGCAMLAAPARGKEIHGYAV-RHALDSDVAVGSALVDMYAKCGCL--ALSRAVFDRL 554

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLF-------ELEPDNEHNFELLIKIYGNAG 507
              + + W  L+ A  +HG   +G+ A   LF       E +P NE  F   +    ++G
Sbjct: 555 PRRNVITWNVLIMAYGMHG---LGDEAI-ALFDRMVASDEAKP-NEVTFIAALAACSHSG 609

Query: 508 RLDDVERVERMLVDRGLEF 526
                      +VDRGLE 
Sbjct: 610 -----------MVDRGLEM 617



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 189/374 (50%), Gaps = 33/374 (8%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
              +S+ LL  YA  G +  A  +FD M +R A  F  NSLI+       +  A+     
Sbjct: 93  TPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTF--NSLIAALCLFRRWLPALDALRD 150

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAK 241
           M  EG     FT   VL AC+ L   +R+G + H  A++ GF  G + F  NAL+ MYA+
Sbjct: 151 MLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYAR 210

Query: 242 CGDIVKARTVFDRIGNKD-----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
            G +  A+T+F  +G  D     ++++N+M++  +  G   EA ++   M+  G  PD V
Sbjct: 211 LGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGV 270

Query: 297 AISSILANAS---LLRIGAQVHGWVLRRGVEWDLC----IANSLIVVYSKDGKLDQACWL 349
             +S L   S   +L +G ++H +VL+   + DL     +A++L+ +Y+   ++  A  +
Sbjct: 271 TFASALPACSQLEMLSLGREMHAYVLK---DADLAANSFVASALVDMYASHERVGAARLV 327

Query: 350 FDHMP--QKDVVSWNSIIHAHSK---DHEALIYFEQMERD-GVLPDHLTFVSLLSACAHL 403
           FD +P  ++ +  WN++I  +++   D +AL  F +ME + GV+P   T   +L +CA  
Sbjct: 328 FDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARS 387

Query: 404 GSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV- 461
            +    E +   +V++    +P V++   +++LY R G +D A  +       E   VV 
Sbjct: 388 ETFAGKEAVHGYVVKRGMADNPFVQN--ALMDLYARLGDMDAARWIFA---TIEPRDVVS 442

Query: 462 WGALLYACYLHGNV 475
           W  L+  C + G++
Sbjct: 443 WNTLITGCVVQGHI 456



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 128/262 (48%), Gaps = 18/262 (6%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG---FVLNALVDMYAKCGDIVKAR 249
           D+F  P   K+ A L  +     +H  A+R     DG    V NAL+  YA+CGD+  A 
Sbjct: 56  DRFALPPAAKSAAALRSLTAVRSIHGAALRHDL-LDGPTPAVSNALLTAYARCGDLTAAL 114

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL-- 307
            +FD + ++D +++NS++         + A D  R M+L G       + S+L   S   
Sbjct: 115 ALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLA 174

Query: 308 --LRIGAQVHGWVLRRG-VEWDLCIA-NSLIVVYSKDGKLDQACWLFDH-----MPQKDV 358
             LR+G + H + L+ G ++ D   A N+L+ +Y++ G +D A  LF       +P   V
Sbjct: 175 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGV 234

Query: 359 VSWNSIIH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           V+WN+++       +  EA+     M   GV PD +TF S L AC+ L  + +G  + + 
Sbjct: 235 VTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAY 294

Query: 416 MVEKYGISPRVEHYACMVNLYG 437
           +++   ++      + +V++Y 
Sbjct: 295 VLKDADLAANSFVASALVDMYA 316


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 250/449 (55%), Gaps = 12/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q G+     +  SLL     L  +  G ++H     + L  +  + S L  +Y+  G +
Sbjct: 267 LQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSL 323

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           +E++ +F ++  +      W S+ISG+ E G   +AI L+ +M +EG  PD+ T   VL 
Sbjct: 324 EESYSLFQEIPFKDNAC--WASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLT 381

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C+ L  +   +++H   +R G      + +ALV+ Y+KCG +  AR V+DR+   D +S
Sbjct: 382 VCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVS 441

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVL 319
            +S+++GY  HGL+ + F +FR M+++GF  D  AISSIL  A L     +GAQVH ++ 
Sbjct: 442 CSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYIT 501

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + G+  +  + +SL+ +YSK G ++  C  F  +   D+++W ++I +   H K +EAL 
Sbjct: 502 KIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQ 561

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            +  M+  G  PD +TFV +LSAC+H G V+ G    + MV+ YGI P   HY CMV+  
Sbjct: 562 VYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDAL 621

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+G + EA + I  +   +   +VWG LL AC ++G+V +G+ AA+K  ELEP +   +
Sbjct: 622 GRSGRLREAENFINTR-PIKPDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAY 680

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L  I    G  D+VE   +++   G++
Sbjct: 681 VSLSNILAEVGEWDEVEETRKLMKGTGVQ 709



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 197/390 (50%), Gaps = 16/390 (4%)

Query: 93  TFASLLETCYQLKAVEHG-IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T++S+L  C  L+ +  G +   R+I      ++  + + ++ LYA  G + EA +VF +
Sbjct: 75  TYSSVLAACASLEELRFGKVVQARVIKCG--AEDVFVCTSIVDLYAKCGHMAEAREVFSR 132

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +SN +  +  W  ++SGY +  +   A+ ++ +M   GVE +  T   V+ AC    ++ 
Sbjct: 133 ISNPSVVS--WTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVC 190

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF---DRIGNKDLISYNSMLT 268
              +VH    + GF  D  V  AL+ M +K GDI  +  VF   D I  ++++  N M+T
Sbjct: 191 EASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVT 248

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
            +  +    +A  +F  M+  G +PD  ++ S+L+    L +G QVH + L+ G+  DL 
Sbjct: 249 SFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNLGKQVHSYTLKSGLILDLT 308

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + +SL  +YSK G L+++  LF  +P KD   W S+I   ++     EA+  F +M  +G
Sbjct: 309 VGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEG 368

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             PD  T  ++L+ C+ L S+   + +    + + GI   +   + +VN Y + G +  A
Sbjct: 369 TSPDESTLAAVLTVCSSLPSLPRSKEIHGYTL-RAGIDRGMPLGSALVNTYSKCGSLKLA 427

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNV 475
              + +++  E  PV   +L+     HG V
Sbjct: 428 RK-VYDRLP-EMDPVSCSSLISGYSQHGLV 455



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 181/334 (54%), Gaps = 20/334 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVF-DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
           + S L+  ++     ++A++VF D +S   A  + WN++I+G      Y     L+ +M 
Sbjct: 9   VQSSLIDAFSKNLRFEDAYKVFRDTLS---ANVYCWNTIIAGALRNQNYGAVFDLFHEMC 65

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
               +PD +T+  VL ACA L  +R G+ V    ++ G   D FV  ++VD+YAKCG + 
Sbjct: 66  NGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCG-AEDVFVCTSIVDLYAKCGHMA 124

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA--- 303
           +AR VF RI N  ++S+  ML+GY        A +IFR M  +G + +   ++S+++   
Sbjct: 125 EAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACG 184

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF---DHMPQKDVVS 360
             S++   +QVH WV + G   D  +A +LI + SK G ++ +  +F   D + ++++V 
Sbjct: 185 RPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV- 243

Query: 361 WNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
            N ++ + S++    +A+  F +M ++G+ PD  +  SLLS    L  + +G+++ S  +
Sbjct: 244 -NVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTL 299

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            K G+   +   + +  +Y + G ++E+YS+  E
Sbjct: 300 -KSGLILDLTVGSSLFTMYSKCGSLEESYSLFQE 332



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 9/186 (4%)

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G+ F   V ++L+D ++K      A  VF    + ++  +N+++ G + +      FD+F
Sbjct: 2   GYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLF 61

Query: 284 RGMILNGFD-PDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
             M  NGF  PD    SS+LA  ASL  LR G  V   V++ G E D+ +  S++ +Y+K
Sbjct: 62  HEMC-NGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAK 119

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSL 396
            G + +A  +F  +    VVSW  ++  ++K ++   AL  F +M   GV  +  T  S+
Sbjct: 120 CGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSV 179

Query: 397 LSACAH 402
           +SAC  
Sbjct: 180 ISACGR 185


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 253/447 (56%), Gaps = 11/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  ++ + +  LL  C   +AV  G ++H  +          +S++L+ LY     +  A
Sbjct: 5   GPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD+M  R   +  W ++ISGY++ G   +A+ L+ QM     EP++FTF  VL +C 
Sbjct: 65  RHVFDEMRERNVVS--WTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCT 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G     +G ++H    +  +    FV ++L+DMYAK G I +AR VF+ +  +D++S  +
Sbjct: 123 GFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           +++GY   GL  EA ++F  +   G   + V  +S+L   S L     G QVH  VLR  
Sbjct: 183 IISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCE 242

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFE 379
           + + + + NSLI +YSK G L+ A  +F++MP + V+SWN+++     H K  E +  F+
Sbjct: 243 LPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFK 302

Query: 380 QM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG-ISPRVEHYACMVNLYG 437
            M E + V PD +TF+++LS C+H G    G  +F  M+     I   +EHY C+++L G
Sbjct: 303 LMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLG 362

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG ++EA+ +I +KM FE +  +WG+LL AC +H N  +GE    +L E+EP+N  N+ 
Sbjct: 363 RAGRVEEAFELI-KKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYV 421

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +L  +Y +AGR +DV  V  +++++ +
Sbjct: 422 ILSNLYASAGRWEDVRNVRELMMEKAV 448



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G++    T+ASLL     L A++HG ++H  +    L     + + L+ +Y+  G ++
Sbjct: 205 REGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLN 264

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLK 202
            A ++F+ M  RT  +  WN+++ GY++ G+  + + L+  M EE  V+PD  TF  VL 
Sbjct: 265 YARKIFNNMPVRTVIS--WNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLS 322

Query: 203 ACAGLGL 209
            C+  GL
Sbjct: 323 GCSHGGL 329


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 249/444 (56%), Gaps = 9/444 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +   T TF+S L+ C    A+ +G ++H             +++ L  +Y   G +D   
Sbjct: 165 VGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGL 224

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           ++F+ M+ R   +  W ++I    ++G+ E+A+  + +M E  V P++FTF  V+  CA 
Sbjct: 225 RLFESMTQRDVVS--WTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCAT 282

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           LG I  GE++H   +R G      V N+++ MY+KC  +  A TVF  +  +D+IS+++M
Sbjct: 283 LGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTM 342

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGV 323
           ++GY   G   EAFD    M   G  P+  A +S+L+   N ++L  G Q+H  VL  G+
Sbjct: 343 ISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGL 402

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           E +  + ++LI +YSK G + +A  +FD     ++VSW ++I+    H    EA+  F++
Sbjct: 403 EQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKK 462

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           + + G+ PD +TF+++L+AC+H G V +G   F+ + + + I P  +HY CM++L  RAG
Sbjct: 463 LPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAG 522

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            +++A SMI + M F+   VVW  LL AC +HG+V  G+ AA+K+ +L+P+       L 
Sbjct: 523 RLNDAESMI-QSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLA 581

Query: 501 KIYGNAGRLDDVERVERMLVDRGL 524
            +Y   G+  +   V +M+  +G+
Sbjct: 582 NMYAAKGKWKEAAEVRKMMKSKGV 605



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 224/475 (47%), Gaps = 46/475 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+ +     +  L+ C    +V  G  LH          +  + S L+ +Y   G +
Sbjct: 60  VEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKV 119

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DE   VF +M  R   +  W ++I+G    G  ++A+A +  M  + V  D +TF   LK
Sbjct: 120 DEGCIVFKEMPLRNVVS--WTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALK 177

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA  G +  G ++H   ++ GF    FV N L  MY KCG +     +F+ +  +D++S
Sbjct: 178 ACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVS 237

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVL 319
           + +++   +  G    A   FR M      P+    +++++  A+L RI  G Q+H  V+
Sbjct: 238 WTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVI 297

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           RRG+   L +ANS++ +YSK  +LD A  +F  + ++D++SW+++I  +++     EA  
Sbjct: 298 RRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFD 357

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           Y   M R+G  P+   F S+LS C ++  ++ G++L +  V   G+       + ++N+Y
Sbjct: 358 YLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHA-HVLCVGLEQNTMVQSALINMY 416

Query: 437 GRAGLIDEA--------YSMIVE-------------------------KMEFEASPVVWG 463
            + G I EA        Y+ IV                          K+      V + 
Sbjct: 417 SKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFI 476

Query: 464 ALLYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           A+L AC   G V +G     +  K+ ++ P  +H +  +I +   AGRL+D E +
Sbjct: 477 AVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDH-YGCMIDLLCRAGRLNDAESM 530



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 201/398 (50%), Gaps = 21/398 (5%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFP 198
           G ++ A Q+FD+M  R   +  W ++ISGY       +A++L+ +M  E G+  D F   
Sbjct: 15  GHLNNARQLFDKMLQRDEIS--WTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 199 RVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             LKAC GL + +  GE +H  +V+  F    FV +ALVDMY K G + +   VF  +  
Sbjct: 73  LALKAC-GLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPL 131

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV 314
           ++++S+ +++ G +  G   EA   F  M +     D    SS L   A++  L  G ++
Sbjct: 132 RNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI 191

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKD 371
           H   L++G      +AN+L  +Y+K GKLD    LF+ M Q+DVVSW +II ++    ++
Sbjct: 192 HCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQE 251

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
             A+  F +M    V P+  TF +++S CA LG ++ GE+L + ++ + G+   +     
Sbjct: 252 ENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR-GLVDSLSVANS 310

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           ++ +Y +   +D A S + + +      + W  ++   Y  G    GE A   L  +  +
Sbjct: 311 IMAMYSKCWQLDLA-STVFQGLS-RRDIISWSTMISG-YAQGGC--GEEAFDYLSWMRRE 365

Query: 492 ----NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
               NE  F  ++ + GN   L+  +++   ++  GLE
Sbjct: 366 GPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLE 403



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 23/307 (7%)

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-G 290
           +N ++    K G +  AR +FD++  +D IS+ ++++GY++     EA  +F  M +  G
Sbjct: 4   INLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPG 63

Query: 291 FDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
              DP  +S  L    L   +  G  +HG+ ++      + + ++L+ +Y K GK+D+ C
Sbjct: 64  LHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 348 WLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +F  MP ++VVSW +II    +   + EAL YF  M    V  D  TF S L ACA  G
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
           ++  G  +    ++K G +        +  +Y + G +D  Y + + +   +   V W  
Sbjct: 184 ALNYGREIHCQTLKK-GFTAVSFVANTLATMYNKCGKLD--YGLRLFESMTQRDVVSWTT 240

Query: 465 LLYACYLHGNVCMG-ETAAQKLF------ELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           ++ +     NV +G E  A K F      ++ P NE  F  +I      GR++  E++  
Sbjct: 241 IIMS-----NVQIGQEENAVKAFRRMRETDVSP-NEFTFAAVISGCATLGRIEWGEQLHA 294

Query: 518 MLVDRGL 524
            ++ RGL
Sbjct: 295 HVIRRGL 301


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 255/429 (59%), Gaps = 9/429 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL++  + +A   G+  H  I    LR +   S+ L+ +Y+  GL++ A ++FD+M  R+
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN+++  + + G+ E A+ L+ QM++EG    +FT   V+ ACA    +   +++
Sbjct: 113 LVS--WNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQL 170

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  A++     + FV  AL+D+YAKCG +  A  VF+ +  +  ++++SM+ GY+ + L 
Sbjct: 171 HGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELY 230

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSL 333
            EA  +F      G + +   ISS L+  +       G QV     + G+  ++ + +SL
Sbjct: 231 EEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSL 290

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           I +Y+K G +++A  +F  + +K+VV WN+I+     H +  EA+IYFE+M++ G+ P+ 
Sbjct: 291 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPND 350

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T++S+LSAC+HLG V+ G + F +M+  + +SP V HY+CMV++ GRAGL+ EA   I 
Sbjct: 351 ITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFI- 409

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           ++M F+A+  +WG+LL +C ++ N+ + E AA+ LFE+EP N  N  LL  IY    R +
Sbjct: 410 DRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWE 469

Query: 511 DVERVERML 519
           +V R   +L
Sbjct: 470 EVARARNLL 478



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 7/287 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G +    T +S++  C     V    +LH       L  N  + + LL +YA  GL+ 
Sbjct: 141 KEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 200

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A+ VF+ M  R+     W+S+++GY +   YE+A+ L+ + +  G+E +QFT    L A
Sbjct: 201 DANLVFECMPERSDVT--WSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSA 258

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    +  G++V   + + G G + FV+++L+DMYAKCG I +A TVF  +  K+++ +
Sbjct: 259 CAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLW 318

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR 320
           N++L+G+  H   +EA   F  M   G  P+ +   S+L+  S   L+  G +    ++R
Sbjct: 319 NAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIR 378

Query: 321 -RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
              V  ++   + ++ +  + G L +A    D MP     S W S++
Sbjct: 379 VHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 256/450 (56%), Gaps = 13/450 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q  +   + T ++++  C  L    +G  +H  +    ++    I S LL LY+  G   
Sbjct: 366 QKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVL 201
           +A+ VF  M  +   A  W SLISG  + G++++A+ ++  M  +++ ++PD      V 
Sbjct: 426 DAYLVFKSMEEKDMVA--WGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVT 483

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            ACAGL  +R G +VH   ++ G   + FV ++L+D+Y+KCG    A  VF  +  ++++
Sbjct: 484 NACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMV 543

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGW 317
           ++NSM++ Y  + L   + D+F  M+  G  PD V+I+S+L    + ASLL+ G  +HG+
Sbjct: 544 AWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLK-GKSLHGY 602

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEA 374
            LR G+  D  + N+LI +Y K G    A  +F  M  K +++WN +I+   +H     A
Sbjct: 603 TLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITA 662

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F++M++ G  PD +TF+SL+SAC H G V+ G+ +F  M + YGI P +EHYA MV+
Sbjct: 663 LSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVD 722

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAGL++EAYS I + M  EA   +W  LL A   H NV +G  +A+KL  +EP+   
Sbjct: 723 LLGRAGLLEEAYSFI-KAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGS 781

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +  LI +Y  AG  ++  ++  ++ ++GL
Sbjct: 782 TYVQLINLYMEAGLKNEAAKLLGLMKEKGL 811



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 227/455 (49%), Gaps = 21/455 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            N + + + +F   L  C Q +    G ++H  +    L  +  + + LL +Y+  G++ 
Sbjct: 265 NNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVG 324

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA  VF  + ++      WN++++ YAE      A+ L+  M ++ V PD FT   V+  
Sbjct: 325 EAETVFSCVVDKRLEI--WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISC 382

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ LGL   G+ VH +  +        + +AL+ +Y+KCG    A  VF  +  KD++++
Sbjct: 383 CSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAW 442

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMI--LNGFDPDP---VAISSILANASLLRIGAQVHGWV 318
            S+++G   +G   EA  +F  M    +   PD     ++++  A    LR G QVHG +
Sbjct: 443 GSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSM 502

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
           ++ G+  ++ + +SLI +YSK G  + A  +F  M  +++V+WNS+I  +S+++    ++
Sbjct: 503 IKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSI 562

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F  M   G+ PD ++  S+L A +   S+  G+ L    + + GI         ++++
Sbjct: 563 DLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTL-RLGIPSDTHLKNALIDM 621

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL----EPD 491
           Y + G    A + I +KM+ + S + W  ++Y    HG+ C+  TA     E+    E  
Sbjct: 622 YVKCGFSKYAEN-IFKKMQHK-SLITWNLMIYGYGSHGD-CI--TALSLFDEMKKAGESP 676

Query: 492 NEHNFELLIKIYGNAGRLDDVERV-ERMLVDRGLE 525
           ++  F  LI    ++G +++ + + E M  D G+E
Sbjct: 677 DDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIE 711



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 191/380 (50%), Gaps = 21/380 (5%)

Query: 108 EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
           E G ++H  +  N L  +  + + L+ +Y  FGL  +A +VF ++ +++     WN +I 
Sbjct: 187 EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVL-WNVMIV 245

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
           G+   G  E ++ LY   +   V+    +F   L AC+       G ++H D V+ G   
Sbjct: 246 GFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHN 305

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D +V  +L+ MY+KCG + +A TVF  + +K L  +N+M+  Y  +     A D+F  M 
Sbjct: 306 DPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMR 365

Query: 288 LNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
                PD   +S++++  S+L +   G  VH  + +R ++    I ++L+ +YSK G   
Sbjct: 366 QKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM--ERDGVLPDHLTFVSLLSA 399
            A  +F  M +KD+V+W S+I    K+    EAL  F  M  + D + PD     S+ +A
Sbjct: 426 DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY----SMIVEKMEF 455
           CA L +++ G ++   M+ K G+   V   + +++LY + GL + A     SM  E M  
Sbjct: 486 CAGLEALRFGLQVHGSMI-KTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENM-- 542

Query: 456 EASPVVWGALLYACYLHGNV 475
               V W +++ +CY   N+
Sbjct: 543 ----VAWNSMI-SCYSRNNL 557



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 189/388 (48%), Gaps = 17/388 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+ C  L  + +G  +H  +     R +  I++ L+ +Y   G +D A QVFD  
Sbjct: 62  TFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGW 121

Query: 153 SNRTAFAFP-----WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           S   +         WNS+I GY +   +++ +  + +M   GV PD F+   V+      
Sbjct: 122 SQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKE 181

Query: 208 GLIR--VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYN 264
           G  R   G+++H   +R     D F+  AL+DMY K G  + A  VF  I +K +++ +N
Sbjct: 182 GNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWN 241

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRR 321
            M+ G+   G+   + D++     N       + +  L   S       G Q+H  V++ 
Sbjct: 242 VMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKM 301

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G+  D  +  SL+ +YSK G + +A  +F  +  K +  WN+++ A++++   + AL  F
Sbjct: 302 GLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLF 361

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M +  VLPD  T  +++S C+ LG    G+ + + + ++  I       + ++ LY +
Sbjct: 362 GFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKR-PIQSTSTIESALLTLYSK 420

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G   +AY ++ + ME E   V WG+L+
Sbjct: 421 CGCDPDAY-LVFKSME-EKDMVAWGSLI 446



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 159/330 (48%), Gaps = 34/330 (10%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEP---DQFTFPRVLKACAGLGLIRVGEKVHLD 219
           NS I    + GEY  A+ LY   + +G  P     FTFP +LKAC+ L  +  G+ +H  
Sbjct: 28  NSGIRALIQKGEYLQALHLY--SKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD-------RIGNKDLISYNSMLTGYIH 272
            V  G+ +D F+  +LV+MY KCG +  A  VFD        +  +D+  +NSM+ GY  
Sbjct: 86  VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFK 145

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRI--GAQVHGWVLRRGVEWDL 327
                E    FR M++ G  PD  ++S   S++      R   G Q+HG++LR  ++ D 
Sbjct: 146 FRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDS 205

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMER 383
            +  +LI +Y K G    A  +F  +  K +VV WN +I           +L  +   + 
Sbjct: 206 FLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKN 265

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC--MVNLYGRAGL 441
           + V     +F   L AC+   +   G ++   +V K G+    + Y C  ++++Y + G+
Sbjct: 266 NSVKLVSTSFTGALGACSQSENSGFGRQIHCDVV-KMGLHN--DPYVCTSLLSMYSKCGM 322

Query: 442 IDEA---YSMIVEKMEFEASPVVWGALLYA 468
           + EA   +S +V+K   E    +W A++ A
Sbjct: 323 VGEAETVFSCVVDK-RLE----IWNAMVAA 347


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 241/438 (55%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C + +       +H L+      +   + + L+  Y   G      +VFD+M
Sbjct: 44  TLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEM 103

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S +      W ++ISG ++   YE+++ L+ +M +  V+P+  T+   L AC+GL  IR 
Sbjct: 104 SEKNVVT--WTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIRE 161

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H    + G  FD  + +AL+DMY+KCG +  A  +F+     D +S   +L G   
Sbjct: 162 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 221

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
           +G   E+  +F  M+ NG   DP  IS+IL    +   L +G Q+H  ++++    +  +
Sbjct: 222 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFV 281

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N LI +YSK G LD +  +F  MPQ++ VSWNS+I A   H     AL  +E+M  +GV
Sbjct: 282 NNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGV 341

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P  +TF+SLL ACAH+G V+ G      M + YGI PR+EHYAC+V++ GRAGL++EA 
Sbjct: 342 WPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAK 401

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E++  +   +VW ALL AC +HGN  MG+ AA +LF   P++   + LL  IY + 
Sbjct: 402 KFI-ERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSE 460

Query: 507 GRLDDVERVERMLVDRGL 524
           G+  +  R  + + D G+
Sbjct: 461 GKWKERARTIKKMKDMGV 478



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 170/321 (52%), Gaps = 12/321 (3%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
           WNS ISG    G+ E    ++ Q+ E G+ + DQ T   VL AC       V + +H   
Sbjct: 9   WNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLV 68

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
             +G+  +  V NAL+  Y +CG     R VFD +  K+++++ ++++G        E+ 
Sbjct: 69  FLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESL 128

Query: 281 DIFRGMILNGFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            +F  M     DP+ +  +SS++A + L  +R G Q+HG V + GV +DLCI ++L+ +Y
Sbjct: 129 KLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMY 188

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFV 394
           SK G L+ A  +F+   + D VS   I+   ++   + E++  F +M ++GV+ D     
Sbjct: 189 SKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMIS 248

Query: 395 SLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           ++L       S+ +G+++ S++++K +G +  V +   ++N+Y + G +D++  +     
Sbjct: 249 AILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNN--GLINMYSKCGDLDDSIKIFCWMP 306

Query: 454 EFEASPVVWGALLYACYLHGN 474
             + + V W +++ A   HGN
Sbjct: 307 --QRNSVSWNSMIAAFARHGN 325



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 105/198 (53%), Gaps = 8/198 (4%)

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILA---NASLLRIGAQ 313
           KD IS+NS ++G + +G +   F +F+ +  +G +  D   ++++L          +   
Sbjct: 4   KDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKM 63

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH- 372
           +H  V   G E ++ + N+LI  Y + G       +FD M +K+VV+W ++I   S+   
Sbjct: 64  IHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQF 123

Query: 373 --EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             E+L  F +M    V P+ LT++S L AC+ L +++ G ++   +V K G+   +   +
Sbjct: 124 YEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHG-LVWKLGVHFDLCIES 182

Query: 431 CMVNLYGRAGLIDEAYSM 448
            ++++Y + G +++A+ +
Sbjct: 183 ALMDMYSKCGSLEDAWKI 200


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 242/450 (53%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQL---KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           +  GI    +T+AS++     L     ++ G K+H  I  + +  +  + + L+ +YA  
Sbjct: 342 IAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARS 401

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           GL+ EA +VFD +   +     + ++IS YA  G    A+ ++ +M   GV P++ TF  
Sbjct: 402 GLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFAT 461

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           VL AC  +G +  G  +H   +  G    D F  N+LVDMYAKCGD+  A  VF+ +  K
Sbjct: 462 VLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTK 521

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           DL+++ +++   +  G    A D++  M+ +G  PD   +S++L   AN   L +G ++H
Sbjct: 522 DLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIH 581

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEAL 375
              LR  +E D    N+L  +Y+K G L++A  L+      DV +W S++ AHS+   A 
Sbjct: 582 RQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLAS 641

Query: 376 IYFE---QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +  E   +ME +GV P+ +TF+ +L +C+  G V  G   F  +   YG  P  EH+ CM
Sbjct: 642 VALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCM 701

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V++ GRAG + +A  ++ + M F    + W +LL +C LH +  +G  AA+ L EL+P++
Sbjct: 702 VDVLGRAGKLRDAEELL-DSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPES 760

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDR 522
              F  L +IY  AGR  D++ ++R L  R
Sbjct: 761 TSQFVALSQIYAAAGRNSDIDEIKRELALR 790



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 215/443 (48%), Gaps = 29/443 (6%)

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
            C ++K +  G  +H  + T     N  I S L+ +YA  G ID A   FD   NR    
Sbjct: 160 ACGRIKDLAQGRSIHYRVATGR-GINSSIQSALVTMYAQCGRIDLAMAAFDD--NRELGT 216

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
            PWN+++S  A  G +  AI L+FQME+   +    +    L ACA  G +R G ++H  
Sbjct: 217 APWNAIMSALAGAGHHRRAIELFFQMEQH--QCSDRSCAIALGACAAAGHLRGGIQIHDK 274

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
                 G    VLNAL+ MY +CG + +A  VF  + +++++S+ SM+      G    +
Sbjct: 275 IQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFS 334

Query: 280 FDIFRGMILNGFDPDPVAISSI------LANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
             +F GMI  G +P+    +S+      L   ++L  G ++H  +   G++ D  + NSL
Sbjct: 335 VKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSL 394

Query: 334 IVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           I +Y++ G L +A  +FD + +  K VVS+ ++I A++ +    +AL  F +M   GV P
Sbjct: 395 INMYARSGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAP 454

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           + +TF ++L+AC  +G +  G  +   M+E    S     Y  +V++Y + G +  A + 
Sbjct: 455 NEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFA-AR 513

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKI 502
           + E M+ +   V W  ++ A    GN      AA  L++      + PD      LL+  
Sbjct: 514 VFETMKTK-DLVAWTTIIAANVQSGN----NRAALDLYDRMLQSGIHPDIATLSTLLVAC 568

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
             N G L   E++ R  +   LE
Sbjct: 569 -ANLGDLAMGEKIHRQALRSKLE 590



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 187/395 (47%), Gaps = 18/395 (4%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
           T Q   +A+LL  C   +A++HG ++H  I +  L +N  +   + ++YA     D A  
Sbjct: 47  TSQLLLYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIA 106

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           +FD M +R  F   WN L+  +       D + LY +M  E  +P    F   + AC  +
Sbjct: 107 LFDAMPDRRPFC--WNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRI 164

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD---RIGNKDLISYN 264
             +  G  +H   V  G G +  + +ALV MYA+CG I  A   FD    +G     +  
Sbjct: 165 KDLAQGRSIHYR-VATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIM 223

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           S L G  HH   +E F  F+       D          A A  LR G Q+H  +      
Sbjct: 224 SALAGAGHHRRAIELF--FQMEQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHG 281

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM 381
             + + N+LI +Y + GKLD+A  +F  MP ++VVSW S+I A ++      ++  F+ M
Sbjct: 282 TRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGM 341

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKV---GERLFS-VMVEKYGISPRVEHYACMVNLYG 437
             +G+ P+  T+ S++SA AHLG   +   G ++ S +        P V++   ++N+Y 
Sbjct: 342 IAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQN--SLINMYA 399

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           R+GL+ EA  +    +E   + V +  ++ A Y H
Sbjct: 400 RSGLLAEAREVFDSILENSKTVVSFTTMISA-YAH 433


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 145/423 (34%), Positives = 253/423 (59%), Gaps = 10/423 (2%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           +G+++H     N L  +  + + L+ +YA F  +     +FD+M ++   +  W ++I+G
Sbjct: 437 NGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS--WTTIIAG 494

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           +A+ G +  A+ L+ +++ EG++ D      +L AC+GL LI   +++H   +R G   D
Sbjct: 495 HAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-D 553

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             + N +VD+Y +CG++  A  +F+ I  KD++S+ SM++ Y+H+GL  EA ++F  M  
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 613

Query: 289 NGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G +PD +++ SIL+ A+ L   + G ++HG+++R+G   +  +A++L+ +Y++ G L++
Sbjct: 614 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 673

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +  +F+ +  KD+V W S+I+A   H     A+  F +ME + + PDH+ FV++L AC+H
Sbjct: 674 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 733

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G +  G R    M  +Y + P  EHY C+V+L GRA  ++EAY   V+ ME E +  VW
Sbjct: 734 SGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQ-FVKGMEVEPTAEVW 792

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            ALL AC +H N  +GE AAQKL E++P+N  N+ L+  +Y    R  DVE V   +   
Sbjct: 793 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKAS 852

Query: 523 GLE 525
           GL+
Sbjct: 853 GLK 855



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 226/420 (53%), Gaps = 21/420 (5%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI +   TF  +L+ C  LK    G ++H L           +++ ++ +Y     ++ 
Sbjct: 210 SGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNG 269

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A Q+FD+M  +      WNS+IS Y+  G+  +A+ L+ +M++  + P+ +TF   L+AC
Sbjct: 270 ARQLFDRMPEKEDVV-SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                I+ G  +H   ++  +  + FV NAL+ MYA+ G + +A  +F  + + D IS+N
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 388

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           SML+G++ +GL  EA   +  M   G  PD VA+ SI+A ++       G Q+H + ++ 
Sbjct: 389 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN 448

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ DL + NSL+ +Y+K   +     +FD MP KDVVSW +II  H+++     AL  F
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +++ +G+  D +   S+L AC+ L  +   + + S ++ K G+S  V     +V++YG 
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGE 566

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL------EPDN 492
            G +D A  M  E +EF+   V W +++ +CY+H  +      A +LF L      EPD+
Sbjct: 567 CGNVDYAARMF-ELIEFK-DVVSWTSMI-SCYVHNGLA---NEALELFHLMKETGVEPDS 620



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 219/405 (54%), Gaps = 15/405 (3%)

Query: 42  RITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETC 101
           +I+ F   P  +P+     ++       Q+L  +  + +S  Q  +    E ++S+LE C
Sbjct: 69  KISKFPLKPVETPSLREICKRGSVNEAFQSLTDLFAN-QSPSQFSLD---EAYSSVLELC 124

Query: 102 YQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
              KA+  G ++H  +I +N L  +  +S++L+ +Y   G + +A ++FD M ++T F  
Sbjct: 125 GSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT- 183

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            WN++I  Y   GE   ++ LY +M   G+  D  TFP +LKAC  L   R G +VH  A
Sbjct: 184 -WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLA 242

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEA 279
           ++ G+    FV N++V MY KC D+  AR +FDR+  K D++S+NSM++ Y  +G  +EA
Sbjct: 243 IKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEA 302

Query: 280 FDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             +F  M      P+    VA      ++S ++ G  +H  VL+     ++ +AN+LI +
Sbjct: 303 LRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAM 362

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
           Y++ GK+ +A  +F +M   D +SWNS++    ++   HEAL ++ +M   G  PD +  
Sbjct: 363 YARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAV 422

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           +S+++A A  G+   G ++ +  + K G+   ++    +V++Y +
Sbjct: 423 ISIIAASARSGNTLNGMQIHAYAM-KNGLDSDLQVGNSLVDMYAK 466



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR-----LYATFG 140
           GI +     +S+L  C  LK +    ++H  I        KG+S  +L+     +Y   G
Sbjct: 515 GIDLDVMMISSILLACSGLKLISSVKEIHSYII------RKGLSDLVLQNGIVDVYGECG 568

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +D A ++F+ +  +   +  W S+IS Y   G   +A+ L+  M+E GVEPD  +   +
Sbjct: 569 NVDYAARMFELIEFKDVVS--WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 626

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L A A L  ++ G+++H   +R GF  +G + + LVDMYA+CG + K+R VF+ I NKDL
Sbjct: 627 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 686

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           + + SM+  Y  HG    A D+FR M      PD +A  ++L   S
Sbjct: 687 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+   + +  S+L     L A++ G ++H  +          ++S L+ +YA  G ++
Sbjct: 613 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLE 672

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           ++  VF+ + N+      W S+I+ Y   G    AI L+ +ME+E + PD   F  VL A
Sbjct: 673 KSRNVFNFIRNKDLVL--WTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 730

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKA 248
           C+  GL+  G +  L+++++ +  + +  +   LVD+  +   + +A
Sbjct: 731 CSHSGLMNEGRRF-LESMKYEYQLEPWPEHYVCLVDLLGRANHLEEA 776


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 260/482 (53%), Gaps = 44/482 (9%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     T+ S+L  C + + +  G  +H       +  N    + L+ +YA  G + 
Sbjct: 166 KNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLA 225

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV--- 200
            A +VFD M  R   +  WNS+IS YA +G++ +A+ L+ +M +EG E +  T+  +   
Sbjct: 226 SARKVFDGMVQRDVVS--WNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGG 283

Query: 201 --------------------------------LKACAGLGLIRVGEKVHLDAVRFGFGFD 228
                                           L AC+ +G +R+G+++H  AVR      
Sbjct: 284 YIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQV 343

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V NAL+ MYA+C D+  AR +F  +    ++++N+ML+ +       EA  IFR MI 
Sbjct: 344 ESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMIC 403

Query: 289 NGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G  P+ V + + LA     + L+ G ++HG +++ G +    + NSLI +YSK G+L  
Sbjct: 404 RGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSV 463

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD M   D++S+ S+I  +    K   AL  FEQM   G+ PDH+  V++LSAC+H
Sbjct: 464 AQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSH 523

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V  GE LF+ MV  YGI P++EHY+CM++LY RAGL+++A  M+ +   F  +  +W
Sbjct: 524 SGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEML-DHTPFPPTSTMW 582

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            AL+ AC+  GN+ +GE AA+KL E+  +N  ++ L+  +Y  AG  D++  V +++ D 
Sbjct: 583 AALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDL 642

Query: 523 GL 524
           G+
Sbjct: 643 GV 644



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 223/489 (45%), Gaps = 89/489 (18%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATF-GLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           G++LH L  +  L ++  +  +LL +Y +   L+  A  V    +  +    P+N LIS 
Sbjct: 92  GVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASV----AADSTLPLPYNVLISS 147

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
               G    A+A Y +M + GV PD FT+P VL+ACA    + +G  VH+ A   G G D
Sbjct: 148 CLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAA--GAGMD 205

Query: 229 G--FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
           G  F  NAL+ MYAKCGD+  AR VFD +  +D++S+NSM++ Y   G   EA ++FR M
Sbjct: 206 GNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRM 265

Query: 287 ILNGFDPDPVAISSI--------------------------------------LANASLL 308
              G + + V  ++I                                       +    L
Sbjct: 266 RDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWL 325

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
           R+G ++HG  +R   +    ++N+LI +Y++   ++ A  LF  +    VV+WN+++ + 
Sbjct: 326 RLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSF 385

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER-------------- 411
           +      EA   F +M   GV P+++T V+ L+ CA + +++ G+               
Sbjct: 386 ALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYR 445

Query: 412 -LFSVMVEKYGISPRVE---------------HYACMVNLYGRAGLIDEAYSMIVEKMEF 455
            L++ +++ Y  S R+                 Y  M+  YG  G    A  +  + ++ 
Sbjct: 446 LLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDS 505

Query: 456 EASP--VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLD 510
              P  ++   +L AC   G V  GE    K+   + ++P  EH +  +I +Y  AG L 
Sbjct: 506 GIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEH-YSCMIDLYARAGLL- 563

Query: 511 DVERVERML 519
             E+ E ML
Sbjct: 564 --EKAEEML 570



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 171/366 (46%), Gaps = 39/366 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G  V   T    L  C ++  +  G ++H L       + + +S+ L+ +YA    +
Sbjct: 301 VRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDM 360

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  +F  +         WN+++S +A     E+A +++ +M   GV+P+  T    L 
Sbjct: 361 ECARMLFRML--ECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLA 418

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA +  ++ G+++H   V+ GF     + N+L+DMY+K G +  A+ VFD + + D+IS
Sbjct: 419 LCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMIS 478

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQV-HGWV 318
           Y SM+ GY   G    A  +F  MI +G  PD + + ++L+  S   L+  G ++ +  V
Sbjct: 479 YTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMV 538

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378
           +  G++  +   + +I +Y++ G L++A  + DH P                        
Sbjct: 539 ISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFP---------------------- 576

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
                    P    + +L+ AC   G++++GER    ++E    +    HY  + N+Y  
Sbjct: 577 ---------PTSTMWAALVGACHDRGNIEIGERAARKLLEMR--TENAGHYVLIANMYAA 625

Query: 439 AGLIDE 444
           AG  DE
Sbjct: 626 AGCWDE 631



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS----- 360
           S LR+G Q+H   L  G+     +   L+ VY+    L         +P    V+     
Sbjct: 87  SHLRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSL---------LPSAASVAADSTL 137

Query: 361 ---WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
              +N +I +   H    +AL  +++M ++GVLPD  T+ S+L ACA    + +G R   
Sbjct: 138 PLPYNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLG-RAVH 196

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +     G+   +     ++++Y + G +  A
Sbjct: 197 MHAAGAGMDGNLFFQNALMSMYAKCGDLASA 227


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 250/443 (56%), Gaps = 12/443 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     TFA++L       AVE G+++H ++  + L     + + ++ +Y+   ++ +A
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD M NR A +  WNS+I+G+   G   +A  L+++M  EGV+  Q  F  V+K CA
Sbjct: 248 KAVFDSMENRNAVS--WNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCA 305

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYN 264
            +  +   +++H   ++ G  FD  +  AL+  Y+KC +I  A  +F  + G ++++S+ 
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWT 365

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL----ANASLLRIGAQVHGWVL 319
           ++++GY+ +G    A ++F  M    G +P+    SS+L    A  + +  G Q H   +
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSI 425

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + G    LC++++L+ +Y+K G ++ A  +F     +D+VSWNS+I     H    ++L 
Sbjct: 426 KSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLK 485

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+M    +  D +TF+ ++SAC H G V  G+R F +MV+ Y I P +EHY+CMV+LY
Sbjct: 486 IFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLY 545

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            RAG++++A  +I  KM F A   +W  LL AC +H NV +GE AA+KL  L+P +   +
Sbjct: 546 SRAGMLEKAMDLI-NKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAY 604

Query: 497 ELLIKIYGNAGRLDDVERVERML 519
            LL  IY  AG   +  +V +++
Sbjct: 605 VLLSNIYATAGNWQERAKVRKLM 627



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 195/355 (54%), Gaps = 14/355 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ +Y     +++  +VFD+M  R      W SL++GY + G  E A+ L+ QM+ 
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEM--RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQL 186

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG++P+ FTF  VL   A  G +  G +VH   ++ G     FV N++V+MY+K   +  
Sbjct: 187 EGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSD 246

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A+ VFD + N++ +S+NSM+ G++ +GL +EAF++F  M L G        ++++   AN
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNS 363
              +    Q+H  V++ G ++DL I  +L+V YSK  ++D A  LF  M   ++VVSW +
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366

Query: 364 IIHAH---SKDHEALIYFEQMER-DGVLPDHLTFVSLLSACAH-LGSVKVGERLFSVMVE 418
           II  +    +   A+  F QM R +GV P+  TF S+L+ACA    SV+ G++  S  + 
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSI- 425

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           K G S  +   + +V +Y + G I+ A  +   K + +   V W +++     HG
Sbjct: 426 KSGFSNALCVSSALVTMYAKRGNIESANEVF--KRQVDRDLVSWNSMISGYAQHG 478



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 17/332 (5%)

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           L DE  Q     +N   F F  N          + ++A+ L+  +   G   D  +   V
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRND---------QNKEALNLFLGLRRSGSPTDGSSLSCV 98

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           LK C  L    VG++VH   ++ GF  D  V  +LVDMY K   +     VFD +  K++
Sbjct: 99  LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGW 317
           +S+ S+L GY  +GL  +A  +F  M L G  P+P   +++   LA    +  G QVH  
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           V++ G++  + + NS++ +YSK   +  A  +FD M  ++ VSWNS+I     +  D EA
Sbjct: 219 VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA 278

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F +M  +GV      F +++  CA++  +   ++L   ++ K G    +     ++ 
Sbjct: 279 FELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVI-KNGSDFDLNIKTALMV 337

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            Y +   ID+A+ +    M    + V W A++
Sbjct: 338 AYSKCSEIDDAFKLFC-MMHGVQNVVSWTAII 368


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 275/536 (51%), Gaps = 80/536 (14%)

Query: 64  FPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLR 123
           F K + + + S +  LE   +N           +L+T   LK +     +H  I +  LR
Sbjct: 16  FRKFQTRKVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTLR---TVHSRIISEDLR 72

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
            N  +  KL+R YA+   +  A +VFD++  R       N +I  Y   G Y + I ++ 
Sbjct: 73  YNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIII--NVMIRSYVNNGFYREGIQVFG 130

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGE-------KVHLDAVRF-------GFGFDG 229
            M    V+PD +TFP VLKAC+  G I +G+       KV L +  F        +G  G
Sbjct: 131 TMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCG 190

Query: 230 FV-----------------LNALVDMYAK------------------------------- 241
           F+                  N+LV  YA+                               
Sbjct: 191 FLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 250

Query: 242 ------CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
                   +++  + +F ++G K L+S+N M+  Y+ + + VEA +++ GM  +GF+PD 
Sbjct: 251 AVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDA 310

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           V+I+S+L    + S L +G ++HG++ R+ +  +L + N+LI +Y+K G LD+A  +F++
Sbjct: 311 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFEN 370

Query: 353 MPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M  +DVVSW ++I A+    +  +A+  F +M+  G++PD + FV+ L+AC+H G ++ G
Sbjct: 371 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEG 430

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
              F +M + Y I+PR+EH ACMV+L GRAG + EAY  I E M  E +  VWGALL AC
Sbjct: 431 RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQE-MPMEPNERVWGALLGAC 489

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +H N  +G  AA KLF+L P+    + LL  IY  AGR ++V  +  ++  +GL+
Sbjct: 490 RVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLK 545


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 239/410 (58%), Gaps = 11/410 (2%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           +++ + +KL+ L  +   I   H +F  +S      F +NS+I   ++L      +A Y 
Sbjct: 39  RSRSLLTKLITLACSARAIAYTHLLF--LSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYR 96

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M    V P  +TF  V+K+CA L  +R+G+ VH  AV  GFG D +V  ALV  Y+KCG
Sbjct: 97  RMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCG 156

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
           D+  AR VFDR+  K ++++NS+++G+  +GL  EA  +F  M  +GF+PD     S+L 
Sbjct: 157 DMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLS 216

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             A    + +G+ VH +++  G++ ++ +  +LI +YS+ G + +A  +FD M + +V +
Sbjct: 217 ACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA 276

Query: 361 WNSIIHA---HSKDHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           W ++I A   H    +A+  F +ME D G +P+++TFV++LSACAH G V+ G  ++  M
Sbjct: 277 WTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRM 336

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGN 474
            + Y + P VEH+ CMV++ GRAG +DEAY  I  ++      +P +W A+L AC +H N
Sbjct: 337 TKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRN 396

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             +G   A++L  LEPDN  +  +L  IY  +G+ D+V  +   ++   L
Sbjct: 397 YDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNL 446



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 189/406 (46%), Gaps = 57/406 (14%)

Query: 54  PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL 113
           P   L N      +KL+     +      + + ++    TF S++++C  L A+  G  +
Sbjct: 70  PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGV 129

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H     +    +  + + L+  Y+  G ++ A QVFD+M  ++  A  WNSL+SG+ + G
Sbjct: 130 HCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVA--WNSLVSGFEQNG 187

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
             ++AI +++QM E G EPD  TF  +L ACA  G + +G  VH   +  G   +  +  
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGT 247

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           AL+++Y++CGD+ KAR VFD++   ++ ++ +M++ Y  HG   +A ++F  M  +   P
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKM-EDDCGP 306

Query: 294 DP-----VAISSILANASLLRIGAQVH-----GWVLRRGVEWDLCIANSLIVVYSKDGKL 343
            P     VA+ S  A+A L+  G  V+      + L  GVE  +C+ + L     + G L
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDML----GRAGFL 362

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA-- 401
           D                            EA  +  Q++  G       + ++L AC   
Sbjct: 363 D----------------------------EAYKFIHQLDATGKATAPALWTAMLGACKMH 394

Query: 402 ---HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
               LG V++ +RL ++  +  G      H+  + N+Y  +G  DE
Sbjct: 395 RNYDLG-VEIAKRLIALEPDNPG------HHVMLSNIYALSGKTDE 433



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 152/318 (47%), Gaps = 17/318 (5%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           ++VH   +  G+G    +L  L+ +      I     +F  +   D   +NS++      
Sbjct: 26  QQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
            L +     +R M+ +   P     +S++   A+ S LRIG  VH   +  G   D  + 
Sbjct: 86  RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQ 145

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
            +L+  YSK G ++ A  +FD MP+K +V+WNS++    ++    EA+  F QM   G  
Sbjct: 146 AALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFE 205

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PD  TFVSLLSACA  G+V +G  +   ++ + G+   V+    ++NLY R G + +A  
Sbjct: 206 PDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GLDLNVKLGTALINLYSRCGDVGKARE 264

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD-----NEHNFELLIKI 502
            + +KM+ E +   W A++ A   HG    G+ A +   ++E D     N   F  ++  
Sbjct: 265 -VFDKMK-ETNVAAWTAMISAYGTHG---YGQQAVELFNKMEDDCGPIPNNVTFVAVLSA 319

Query: 503 YGNAGRLDDVERVERMLV 520
             +AG +++   V + + 
Sbjct: 320 CAHAGLVEEGRSVYKRMT 337


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 230/411 (55%), Gaps = 17/411 (4%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + LL LYA  GL+  A +VFD+M + +    PW +LI+ Y + G+  +A+ +   
Sbjct: 105 NPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTV--PWTALITAYMDAGDLREAVHVARN 162

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
               G+ PD FT  RVL ACA +  +  GE V   A + G     FV  A VD+Y KCG+
Sbjct: 163 AFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGE 222

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + KAR VFD++ +KD +++ +M+ GY  +G   EA D+F  M   G  PD  A++  L+ 
Sbjct: 223 MAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSA 282

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----SLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            +  R+GA   G    R V+WD  + N     +LI +Y+K G   +A  +F  M +KD++
Sbjct: 283 CT--RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 340

Query: 360 SWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
            WN++I       H K   AL+   QME+ GV  +  TF+ LL +C H G ++ G R F 
Sbjct: 341 VWNAMILGLGMTGHEKIAFALV--GQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 398

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + Y ISPR+EHY CMV+L  RAGL+ EA+ + V+ M   A+ V+ GALL  C +H N
Sbjct: 399 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQL-VDDMPMPANAVILGALLGGCKIHRN 457

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + E   ++L  LEP N  N+ +L  IY N GR +D  ++   +  +G+E
Sbjct: 458 TELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 508



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 151/291 (51%), Gaps = 12/291 (4%)

Query: 192 PDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           P   T P  LK+ + L   +R GE++H  +++     +  VL +L+ +YAKCG + +A+ 
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASL 307
           VFD + +   + + +++T Y+  G L EA  + R    NG  PD    V + +  A  + 
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L  G  V     + GV   + +A + + +Y K G++ +A  +FD M  KD V+W +++  
Sbjct: 188 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGG 247

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM-VEKYGIS 423
           ++ +    EAL  F  M+ +G+ PD       LSAC  LG++ +G +   ++  +++  +
Sbjct: 248 YASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           P +     ++++Y + G   EA+ ++ ++M  +   +VW A++    + G+
Sbjct: 308 PVLG--TALIDMYAKCGSTVEAW-VVFQQMR-KKDIIVWNAMILGLGMTGH 354



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 14/229 (6%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           F   P  S  P      A+       L   +    ++  NG+   + T   +L  C ++ 
Sbjct: 129 FDEMPHPSTVPWTALITAY--MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
            +  G  + R      + ++  +++  + LY   G + +A +VFD+M ++ A A  W ++
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA--WGAM 244

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           + GYA  G   +A+ L+  M+ EG++PD +     L AC  LG + +G +    A+R   
Sbjct: 245 VGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ----AIRM-V 299

Query: 226 GFDGFVLN-----ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
            +D F+ N     AL+DMYAKCG  V+A  VF ++  KD+I +N+M+ G
Sbjct: 300 DWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILG 348



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+       A  L  C +L A++ G +  R++  +    N  + + L+ +YA  G   EA
Sbjct: 268 GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEA 327

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF QM  +      WN++I G    G  + A AL  QME+ GV+ +  TF  +L +C 
Sbjct: 328 WVVFQQMRKKDIIV--WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCT 385

Query: 206 GLGLIRVGEK 215
             GLI+ G +
Sbjct: 386 HTGLIQDGRR 395


>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana]
 gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 564

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 143/440 (32%), Positives = 247/440 (56%), Gaps = 11/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L++C  L  ++ G+++H  +       N  + S LL LYA  G ++EA   FD M
Sbjct: 115 TYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSM 174

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++I GY      + + +L+  M  EG +PD FTF  +L+A   +  + +
Sbjct: 175 KERDLVS--WNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEI 232

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
             ++H  A++ GFG    ++ +LV+ Y KCG +  A  + +    +DL+S  +++TG+  
Sbjct: 233 VSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQ 292

Query: 273 -HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDL 327
            +    +AFDIF+ MI      D V +SS+L      + + IG Q+HG+ L+   + +D+
Sbjct: 293 QNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDV 352

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + NSLI +Y+K G+++ A   F+ M +KDV SW S+I     H    +A+  + +ME +
Sbjct: 353 ALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHE 412

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + P+ +TF+SLLSAC+H G  ++G +++  M+ K+GI  R EH +C++++  R+G ++E
Sbjct: 413 RIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEE 472

Query: 445 AYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           AY++I  K    + S   WGA L AC  HGNV + + AA +L  +EP    N+  L  +Y
Sbjct: 473 AYALIRSKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVY 532

Query: 504 GNAGRLDDVERVERMLVDRG 523
              G  D+     +++ + G
Sbjct: 533 AANGAWDNALNTRKLMKESG 552



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 185/363 (50%), Gaps = 11/363 (3%)

Query: 119 TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
           TN    N  +   L+ LY   G +  A ++FD++S R   +  W ++IS ++  G + DA
Sbjct: 40  TNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVS--WTAMISRFSRCGYHPDA 97

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
           + L+ +M  E V+ +QFT+  VLK+C  LG ++ G ++H    +     +  V +AL+ +
Sbjct: 98  LLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSL 157

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           YA+CG + +AR  FD +  +DL+S+N+M+ GY  +     +F +F+ M+  G  PD    
Sbjct: 158 YARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTF 217

Query: 299 SSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
            S+L  +     L I +++HG  ++ G      +  SL+  Y K G L  A  L +   +
Sbjct: 218 GSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKK 277

Query: 356 KDVVSWNSIIHAHSKDH----EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +D++S  ++I   S+ +    +A   F+ M R     D +   S+L  C  + SV +G +
Sbjct: 278 RDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQ 337

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +    ++   I   V     ++++Y ++G I++A  +  E+M+ E     W +L+     
Sbjct: 338 IHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAV-LAFEEMK-EKDVRSWTSLIAGYGR 395

Query: 472 HGN 474
           HGN
Sbjct: 396 HGN 398


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 253/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T + ++  C  ++ +  G +LH     + L  ++ +   L+ +YA     G +  A ++F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEY-EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           DQ+ +   F+  W ++I+GY + G Y E+A+ L+  M    V P+ FTF   LKACA L 
Sbjct: 333 DQILDHNVFS--WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLA 390

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R+GE+V   AV+ GF     V N+L+ MYA+ G I  AR  FD +  K+LISYN+++ 
Sbjct: 391 ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEW 325
            Y  +    EA ++F  +   G        +S+L+ A+ +     G Q+H  V++ G++ 
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           +  + N+LI +YS+ G ++ A  +F+ M  ++V+SW SII   +K     +AL  F +M 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +GV P+ +T++++LSAC+H+G V  G + F  M  ++G+ PR+EHYACMV++ GR+G +
Sbjct: 571 EEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSL 630

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I   M ++A  +VW   L AC +HGN+ +G+ AA+ + E EP +   + LL  +
Sbjct: 631 SEAIQFI-NSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNL 689

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y +  + D+V  + + + ++ L
Sbjct: 690 YASTSKWDEVSNIRKAMKEKNL 711



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 220/403 (54%), Gaps = 17/403 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYAT-FG 140
           ++NG       FA+    C   + V  G  +   ++ T  L+ +  +   L+ ++    G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +  A +VF++M  R A    W  +I+   + G   +AI L+ +M   G EPD+FT   V
Sbjct: 220 DLVSAFKVFEKMPERNAVT--WTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGN 257
           + ACA + L+ +G+++H  A+R G   D  V   L++MYAKC   G +  AR +FD+I +
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 258 KDLISYNSMLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ 313
            ++ S+ +M+TGY+  G    EA D+FRGMIL    P+    SS L   AN + LRIG Q
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           V    ++ G     C+ANSLI +Y++ G++D A   FD + +K+++S+N++I A++K+  
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 372 -HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EAL  F ++E  G+     TF SLLS  A +G++  GE++ + ++ K G+        
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVI-KSGLKLNQSVCN 516

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++++Y R G I+ A+  + E ME + + + W +++     HG
Sbjct: 517 ALISMYSRCGNIESAFQ-VFEDME-DRNVISWTSIITGFAKHG 557



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 214/417 (51%), Gaps = 22/417 (5%)

Query: 56  PLLTNQKAFPKTKLQALDS-----IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHG 110
           P  TN        +Q +++      I  LE  V  G     +T++  L+ C + ++ + G
Sbjct: 26  PTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIG 85

Query: 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
             +H  +  + L+ +    + L+ LY+  G  ++A  +F  M +       W++++S +A
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDL-ISWSAMVSCFA 144

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDG 229
                  A+  +  M E G  P+++ F    +AC+    + VG+ +    V+ G+   D 
Sbjct: 145 NNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDV 204

Query: 230 FVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            V   L+DM+ K  GD+V A  VF+++  ++ +++  M+T  +  G   EA D+F  MIL
Sbjct: 205 CVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMIL 264

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DGK 342
           +G++PD   +S ++   AN  LL +G Q+H   +R G+  D C+   LI +Y+K   DG 
Sbjct: 265 SGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGS 324

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQMERDGVLPDHLTFVSLLS 398
           +  A  +FD +   +V SW ++I  + +    D EAL  F  M    V+P+H TF S L 
Sbjct: 325 MCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE---AYSMIVEK 452
           ACA+L ++++GE++F+  V K G S        ++++Y R+G ID+   A+ ++ EK
Sbjct: 385 ACANLAALRIGEQVFTHAV-KLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 237/445 (53%), Gaps = 30/445 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI V   T  S+L  C     +  G  +H L   +   +    S+ LL +Y+  G +D A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF++M  R   +  W S+I+GY   G  + AI L  QME+EGV+ D      +L ACA
Sbjct: 306 LRVFEKMGERNVVS--WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACA 363

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH          + FV NAL+DMYAKCG +  A +VF  +  KD+IS+N+
Sbjct: 364 RSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNT 423

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+                         PD   ++ IL   A+ S L  G ++HG++LR G
Sbjct: 424 MV---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNG 462

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+L+ +Y K G L  A  LFD +P KD+VSW  +I     H   +EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 522

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD ++F+S+L AC+H G ++ G R F +M   + I P++EHYACMV+L  R 
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  I E +       +WGALL  C ++ ++ + E  A+++FELEP+N   + LL
Sbjct: 583 GNLSKAYKFI-ETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A + ++V+R+   +  +GL
Sbjct: 642 ANIYAEAEKREEVKRMREKIGKKGL 666



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 210/461 (45%), Gaps = 83/461 (18%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++T+T+ S+L+ C  LK++  G K+H +I +N +  ++ +  KL+  YAT G + E  +V
Sbjct: 97  LETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 149 FDQMSNRTAF-------------------------------------------------A 159
           FD M  +  +                                                  
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDV 216

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WNS+ISGY   G  E  + +Y QM   G++ D  T   VL  CA  G + +G+ VH  
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++  F       N L+DMY+KCGD+  A  VF+++G ++++S+ SM+ GY   G    A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             + + M   G   D VAI+SIL   A +  L  G  VH ++    +  +L + N+L+ +
Sbjct: 337 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDM 396

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSL 396
           Y+K G ++ A  +F  M  KD++SWN+++                    + PD  T   +
Sbjct: 397 YAKCGSMEGANSVFSTMVVKDIISWNTMVGE------------------LKPDSRTMACI 438

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEA---YSMIVEK 452
           L ACA L +++ G+ +   ++     S R  H A  +V+LY + G++  A   + MI  K
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 453 MEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPD 491
                  V W  ++  Y  + +GN  +      +   +EPD
Sbjct: 497 -----DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 170/360 (47%), Gaps = 71/360 (19%)

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           HQV D           +N+ I  + +LG+ E+A+ L    ++  +E    T+  VL+ CA
Sbjct: 64  HQVTD-----------YNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCA 110

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV-------------- 251
           GL  +  G+KVH        G D  +   LV  YA CGD+ + R V              
Sbjct: 111 GLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNF 170

Query: 252 -------------------------------------FDRIGNKDLISYNSMLTGYIHHG 274
                                                FD++ ++D+IS+NSM++GY+ +G
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNG 230

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L      I++ M+  G D D   I S+L   AN+  L +G  VH   ++   E  +  +N
Sbjct: 231 LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSN 290

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +L+ +YSK G LD A  +F+ M +++VVSW S+I  +++D     A+I  +QME++GV  
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKL 350

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +   S+L ACA  GS+  G+ +    ++   ++  +     ++++Y + G ++ A S+
Sbjct: 351 DVVAITSILHACARSGSLDNGKDVHDY-IKANNMASNLFVCNALMDMYAKCGSMEGANSV 409


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 155/494 (31%), Positives = 274/494 (55%), Gaps = 45/494 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +ALD ++ D++S    G+ + + T+ S L  C +L ++  G +LH  +  NL   +  ++
Sbjct: 253 EALDMVV-DMQS---KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA 308

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           S L+ LYA  G   EA  VF+ + +R   A  W  LI+G+ + G + +++ L+ QM  E 
Sbjct: 309 SALVELYAKCGCFKEAKGVFNSLHDRNNVA--WTVLIAGFLQHGCFTESVELFNQMRAEL 366

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------- 242
           +  DQF    ++  C     + +G ++H   ++ G      V N+L+ MYAKC       
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 243 ------------------------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
                                   G+I KAR  FD +  K++I++N+ML  YI HG   +
Sbjct: 427 SIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEED 486

Query: 279 AFDIFRGMIL-NGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLI 334
              ++  M+      PD V   ++    + L   ++G Q+ G  ++ G+  D  +AN++I
Sbjct: 487 GLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVI 546

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHL 391
            +YSK G++ +A  +FD +  KD+VSWN++I  +S+     +A+  F+ + + G  PD++
Sbjct: 547 TMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYI 606

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           ++V++LS C+H G V+ G+  F +M   + ISP +EH++CMV+L GRAG + EA  +I +
Sbjct: 607 SYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLI-D 665

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           +M  + +  VWGALL AC +HGN  + E AA+ +FEL+  +  ++ L+ KIY +AG+ DD
Sbjct: 666 EMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDD 725

Query: 512 VERVERMLVDRGLE 525
             ++ +++ D+G++
Sbjct: 726 SAQIRKLMRDKGIK 739



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 196/393 (49%), Gaps = 47/393 (11%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           +S L+    T+G +D A ++FD M  R   +  WN ++S  ++ G   +A+ +   M+ +
Sbjct: 208 NSMLVGYVKTYG-VDHALELFDSMPERDVVS--WNMMVSALSQSGRVREALDMVVDMQSK 264

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV  D  T+   L ACA L  +R G+++H   +R     D +V +ALV++YAKCG   +A
Sbjct: 265 GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEA 324

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL- 307
           + VF+ + +++ +++  ++ G++ HG   E+ ++F  M       D  A++++++     
Sbjct: 325 KGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSR 384

Query: 308 --LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             L +G Q+H   L+ G    + ++NSLI +Y+K   L  A  +F  M +KD+VSW S+I
Sbjct: 385 MDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMI 444

Query: 366 HAHSK---DHEALIYFEQM--------------------ERDG------------VLPDH 390
            AHS+     +A  +F+ M                    E DG            V PD 
Sbjct: 445 TAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDW 504

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T+V+L   CA LG+ K+G+++    V K G+         ++ +Y + G I EA   + 
Sbjct: 505 VTYVTLFKGCADLGANKLGDQIIGRTV-KVGLILDTSVANAVITMYSKCGRILEARK-VF 562

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           + +  +   V W A++     HG   MG+ A +
Sbjct: 563 DFLNVK-DIVSWNAMITGYSQHG---MGKQAIE 591



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 195/445 (43%), Gaps = 48/445 (10%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           RL+ T++   N    + +L  Y   G + +A ++F +M  R   +  WN+L+SGY +  +
Sbjct: 60  RLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVAS--WNTLMSGYFQSQQ 117

Query: 175 YEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           Y  ++  +  M   G   P+ FTF   +K+C  LG   +  ++     +FG   D  V  
Sbjct: 118 YLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAA 177

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI---------------------- 271
           ALVDM+ +CG +  A  +F RI    +   NSML GY+                      
Sbjct: 178 ALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVS 237

Query: 272 ---------HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
                      G + EA D+   M   G   D    +S L   A  S LR G Q+H  V+
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 297

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R     D  +A++L+ +Y+K G   +A  +F+ +  ++ V+W  +I     H    E++ 
Sbjct: 298 RNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVE 357

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM  + +  D     +L+S C     + +G +L S+ ++   I   V   + ++++Y
Sbjct: 358 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS-LISMY 416

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHN 495
            +   +  A S+   +   E   V W +++ A    GN+      A++ F+ +   N   
Sbjct: 417 AKCDNLQSAESIF--RFMNEKDIVSWTSMITAHSQVGNI----AKAREFFDGMSTKNVIT 470

Query: 496 FELLIKIYGNAGRLDDVERVERMLV 520
           +  ++  Y   G  +D  R+  +++
Sbjct: 471 WNAMLGAYIQHGAEEDGLRMYNVML 495



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 158/390 (40%), Gaps = 84/390 (21%)

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART-VFDR 254
            F   L++C   G +     +H   V  G     F+ N L+  Y  CG +  AR  +   
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF------------- 291
           I + ++I++N ML GY+  G L +A ++F  M          +++G+             
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 292 -------DPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDLCIA--------- 330
                  D  P A +   A  S   +G      Q+ G V + G + D  +A         
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 331 ----------------------NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
                                 NS++V Y K   +D A  LFD MP++DVVSWN ++ A 
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           S+     EAL     M+  GV  D  T+ S L+ACA L S++ G++L + ++      P 
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PC 302

Query: 426 VEHY--ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           ++ Y  + +V LY + G   EA    V     + + V W  L+     HG  C  E+   
Sbjct: 303 IDPYVASALVELYAKCGCFKEAKG--VFNSLHDRNNVAWTVLIAGFLQHG--CFTESV-- 356

Query: 484 KLF---ELEPDNEHNFELLIKIYGNAGRLD 510
           +LF     E      F L   I G   R+D
Sbjct: 357 ELFNQMRAELMTLDQFALATLISGCCSRMD 386


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 249/440 (56%), Gaps = 12/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  + + C    AVE G ++H +I       +  + S LL  Y   G I  A QVFD+ 
Sbjct: 107 TYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEF 166

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIR 211
             +      WN+LI+GYA  G   D+  ++ +M E + V P++ T   ++ AC     ++
Sbjct: 167 DAKDVVF--WNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLK 224

Query: 212 VGEKVHLDAVRFGFGFDGFVLNA-LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           +G  +H   ++     +G  L A L+++Y KCG +  AR +FD I  K+ + +NS++ GY
Sbjct: 225 LGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGY 284

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
              G L E  ++ R M L+   PD   +S +L   A      +G  VH +  ++G+ WD+
Sbjct: 285 CQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDV 343

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERD 384
            I  +LI +Y+K G +  A  +FD M +++V +WN+I+    +H +   A+  F +M   
Sbjct: 344 FIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRES 403

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  PD +TF+++L ACAH G V+ G++ F +M++ Y I PRVEHY CMV+L GRAGL+ E
Sbjct: 404 GARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQE 463

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  +I + M  E + VVWGALL AC +HGN+ +GE AA  + +L   +  ++ +L  +Y 
Sbjct: 464 ARELI-KMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYA 522

Query: 505 NAGRLDDVERVERMLVDRGL 524
           +A R + V+ V  M+V++G+
Sbjct: 523 SAQRFNRVKAVREMMVEKGI 542



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 214/401 (53%), Gaps = 27/401 (6%)

Query: 87  ITVQT-ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           +T+QT ++  +L+ETC  ++ ++   ++H     + L   + I +K++  + +   +D A
Sbjct: 1   MTIQTPKSVLALIETCTNIQQLK---QIHAKSIISSLSYTQFIITKIINSFLSHACLDYA 57

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKAC 204
            QVF+Q      F +  N++I  Y+       AI++Y +M   + +  D++T+P V KAC
Sbjct: 58  TQVFNQTQEPDGFIY--NAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKAC 115

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A    +  G++VH   VR G+  DGF+ ++L++ Y  CG+I  A+ VFD    KD++ +N
Sbjct: 116 ASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWN 175

Query: 265 SMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILA---NASLLRIGAQVHGW--- 317
           +++TGY   G+++++F +F+ M+ +    P+   +  ++     +  L++G  +HG+   
Sbjct: 176 ALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMK 235

Query: 318 --VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
             VLR GV+    +  +LI +Y K G LD A  LFD +P+K+ V WNS+I  + +    +
Sbjct: 236 DMVLREGVK----LEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLN 291

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           E +    +M    + PD  T   +LSACA +G+  +G  +     EK GI       A +
Sbjct: 292 EVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHR-FAEKKGIWDVFIGTA-L 349

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +++Y + G I  A   + ++M  E +   W A+L     HG
Sbjct: 350 IDMYAKCGFIGAARK-VFDQMN-ERNVATWNAILSGYASHG 388



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 17/215 (7%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           ++ +L+ +I+ L     + +     T + +L  C Q+ A   G  +HR        + KG
Sbjct: 286 QIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHR------FAEKKG 339

Query: 128 -----ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
                I + L+ +YA  G I  A +VFDQM+ R      WN+++SGYA  G+ E AI L+
Sbjct: 340 IWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVAT--WNAILSGYASHGQAESAIELF 397

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYA 240
            +M E G  PD  TF  VL ACA  GL+  G K + D +   +     V     +VD+  
Sbjct: 398 SEMRESGARPDSITFLAVLHACAHSGLVENG-KQYFDLMLQYYKIPPRVEHYGCMVDLLG 456

Query: 241 KCGDIVKARTVFD-RIGNKDLISYNSMLTGYIHHG 274
           + G + +AR +    +   +++ + ++L+    HG
Sbjct: 457 RAGLLQEARELIKMMVVEPNVVVWGALLSACSIHG 491


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 278/513 (54%), Gaps = 59/513 (11%)

Query: 69  LQALDSI--IQDLESSVQN-GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           +Q  DSI  ++  E   ++ GI     +  ++L  C  + A   G ++H     + L ++
Sbjct: 206 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 265

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             + + ++ +YA  G+++EA++VF++M  +   +  WN++++GY+++G ++DA+ L+ ++
Sbjct: 266 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS--WNAMVTGYSQIGRFDDALGLFEKI 323

Query: 186 EEE-----------------------------------GVEPDQFTFPRVLKACAGLGLI 210
            EE                                   G EP+  T   +L  CA  G +
Sbjct: 324 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTL 383

Query: 211 RVGEKVHLDAVRFGF-------GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD--LI 261
             G++ H  A+++         G D  V+NAL+DMY+KC     AR +FD I  KD  ++
Sbjct: 384 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 443

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMIL--NGFDPDPVAIS-SILANASL--LRIGAQVHG 316
           ++  ++ G   HG   EA ++F  M+   N   P+   IS +++A A L  LR G Q+H 
Sbjct: 444 TWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 503

Query: 317 WVLRRGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
           +VLR   E   L +AN LI +YSK G +D A  +FD+M Q++ VSW S++     H +  
Sbjct: 504 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 563

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL  F +M++ G++PD +TFV +L AC+H G V  G   F+ M + +G+ P  EHYACM
Sbjct: 564 EALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 623

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L  RAG +DEA  +I   M  + +P VW ALL AC ++ NV +GE AA +L ELE  N
Sbjct: 624 VDLLSRAGRLDEAMELI-RGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGN 682

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + ++ LL  IY NA    DV R+  ++ + G++
Sbjct: 683 DGSYTLLSNIYANARCWKDVARIRYLMKNTGIK 715



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 240/494 (48%), Gaps = 63/494 (12%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           SS T    NQ       L  L+ ++Q      + G      TF  +L+ C ++ +   G 
Sbjct: 87  SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 146

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYA 170
            +H ++  +    N  + + L+ +Y   G  + A QVFD+M  R       WNS+++ Y 
Sbjct: 147 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 206

Query: 171 ELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           + G+   A+ ++ +M E+ G+ PD  +   VL ACA +G    G++VH  A+R G   D 
Sbjct: 207 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDV 266

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT--------------------- 268
           FV NA+VDMYAKCG + +A  VF+R+  KD++S+N+M+T                     
Sbjct: 267 FVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 326

Query: 269 --------------GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
                         GY   GL  EA D+FR M L G +P+ V + S+L+  +L   G  +
Sbjct: 327 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCAL--AGTLL 384

Query: 315 HG---------WVL---RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD--VVS 360
           HG         W+L         DL + N+LI +YSK      A  +FD +P KD  VV+
Sbjct: 385 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVT 444

Query: 361 WNSIIHA---HSKDHEALIYFEQMER--DGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           W  +I     H + +EAL  F QM +  + V+P+  T    L ACA LG+++ G ++ + 
Sbjct: 445 WTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAY 504

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           ++     S  +    C++++Y ++G +D A  ++ + M  + + V W +L+    +HG  
Sbjct: 505 VLRNRFESAMLFVANCLIDMYSKSGDVDAA-RVVFDNMH-QRNGVSWTSLMTGYGMHGR- 561

Query: 476 CMGETAAQKLFELE 489
             GE A Q  +E++
Sbjct: 562 --GEEALQIFYEMQ 573



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/491 (28%), Positives = 219/491 (44%), Gaps = 74/491 (15%)

Query: 57  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE--HGIKLH 114
           L++  +  PK  L  L +      SS        T+  ++L   C  L + E  H   L 
Sbjct: 2   LISLPRLKPKPPLLFLTTFFFSTASST-------TDLTSTLFHQCKSLASAELIHQQLLV 54

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           + +P +         + ++ +Y TF    +A  V  ++   +   F WN LI     LG 
Sbjct: 55  QGLPHD--------PTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGF 106

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
            ED + LY +M+  G  PD +TFP VLKAC  +   R G  VH      GF ++ FV N 
Sbjct: 107 LEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNG 166

Query: 235 LVDMYAKCGDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-G 290
           LV MY +CG    AR VFD +   G  DL+S+NS++  Y+  G  + A  +F  M  + G
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 226

Query: 291 FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
             PD V++ ++L   A+      G QVHG+ LR G+  D+ + N+++ +Y+K G +++A 
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286

Query: 348 WLFDHMPQKDVVSWNSIIHAHSK------------------------------------- 370
            +F+ M  KDVVSWN+++  +S+                                     
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 346

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL------FSVMVEKYGIS 423
              EAL  F QM   G  P+ +T VSLLS CA  G++  G+        + + +++    
Sbjct: 347 LGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPG 406

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
             +     ++++Y +      A +M       + S V W  L+     HG        A 
Sbjct: 407 DDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEA----NEAL 462

Query: 484 KLFE--LEPDN 492
           +LF   L+PDN
Sbjct: 463 ELFSQMLQPDN 473


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 260/468 (55%), Gaps = 20/468 (4%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           PKT       I++D       G      TF ++L++C +   +  G ++H +I       
Sbjct: 15  PKTAFLVYRRIVKD-------GFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVC 67

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + L+  Y+      +A +VFD+M  R   +  W  +ISGY   G +++A+ L+ +
Sbjct: 68  NIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVS--WTGVISGYVRAGLFDEAVGLFLR 125

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+   VEP+  TF  VL AC   G + VG+ +H  + +  FG    V NAL+DMY KCG 
Sbjct: 126 MD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGC 182

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           +  A+ VFD +  KD++S+ S+++G +      EA ++F+ M  +G +PD + ++S+L  
Sbjct: 183 LPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSA 242

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            A    L  G  VH  + R+ ++WD+ I  +++ +Y+K G ++ +  +F+ MP K+V++W
Sbjct: 243 CARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTW 302

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV- 417
           N++++    H   ++ L  FE+M R G+ P+ +TF+++L+AC H G V  G + F+ M  
Sbjct: 303 NALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKG 362

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           ++Y + PR+EHY CMV+L  RA L+DEA  +  + M       + GALL AC  +GN  +
Sbjct: 363 QQYNLPPRLEHYGCMVDLLCRARLLDEALEL-TKAMPMSPDVRIMGALLSACKENGNTEL 421

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +    +  EL+  +   + LL  I+    R DDV R+ R++ ++G++
Sbjct: 422 PQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIK 469



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 168/320 (52%), Gaps = 12/320 (3%)

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
           P+N+L+SGYA     + A  +Y ++ ++G  PD FTFP VLK+CA    I  G +VH   
Sbjct: 1   PFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
           ++ GF  + +V N+LV  Y+ C     A  VFD +  +D++S+  +++GY+  GL  EA 
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 281 DIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            +F  M     +P+     S+L        L +G  +HG   +      L ++N+L+ +Y
Sbjct: 121 GLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMY 177

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFV 394
            K G L  A  +FD + +KD+VSW SII    +     EAL  F+ M+  G+ PD +   
Sbjct: 178 VKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILT 237

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           S+LSACA LG++  G R     +++  I   ++    MV++Y + G I+   SM +    
Sbjct: 238 SVLSACARLGALDYG-RWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIE--MSMQIFNGM 294

Query: 455 FEASPVVWGALLYACYLHGN 474
              + + W ALL    +HG+
Sbjct: 295 PHKNVLTWNALLNGLAMHGH 314


>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730
 gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana]
 gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]
          Length = 565

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 143/440 (32%), Positives = 247/440 (56%), Gaps = 11/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L++C  L  ++ G+++H  +       N  + S LL LYA  G ++EA   FD M
Sbjct: 116 TYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSM 175

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++I GY      + + +L+  M  EG +PD FTF  +L+A   +  + +
Sbjct: 176 KERDLVS--WNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEI 233

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
             ++H  A++ GFG    ++ +LV+ Y KCG +  A  + +    +DL+S  +++TG+  
Sbjct: 234 VSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQ 293

Query: 273 -HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWDL 327
            +    +AFDIF+ MI      D V +SS+L      + + IG Q+HG+ L+   + +D+
Sbjct: 294 QNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDV 353

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + NSLI +Y+K G+++ A   F+ M +KDV SW S+I     H    +A+  + +ME +
Sbjct: 354 ALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHE 413

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + P+ +TF+SLLSAC+H G  ++G +++  M+ K+GI  R EH +C++++  R+G ++E
Sbjct: 414 RIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEE 473

Query: 445 AYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           AY++I  K    + S   WGA L AC  HGNV + + AA +L  +EP    N+  L  +Y
Sbjct: 474 AYALIRSKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVY 533

Query: 504 GNAGRLDDVERVERMLVDRG 523
              G  D+     +++ + G
Sbjct: 534 AANGAWDNALNTRKLMKESG 553



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 185/363 (50%), Gaps = 11/363 (3%)

Query: 119 TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
           TN    N  +   L+ LY   G +  A ++FD++S R   +  W ++IS ++  G + DA
Sbjct: 41  TNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVS--WTAMISRFSRCGYHPDA 98

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
           + L+ +M  E V+ +QFT+  VLK+C  LG ++ G ++H    +     +  V +AL+ +
Sbjct: 99  LLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSL 158

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           YA+CG + +AR  FD +  +DL+S+N+M+ GY  +     +F +F+ M+  G  PD    
Sbjct: 159 YARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTF 218

Query: 299 SSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
            S+L  +     L I +++HG  ++ G      +  SL+  Y K G L  A  L +   +
Sbjct: 219 GSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKK 278

Query: 356 KDVVSWNSIIHAHSKDH----EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +D++S  ++I   S+ +    +A   F+ M R     D +   S+L  C  + SV +G +
Sbjct: 279 RDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQ 338

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +    ++   I   V     ++++Y ++G I++A  +  E+M+ E     W +L+     
Sbjct: 339 IHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAV-LAFEEMK-EKDVRSWTSLIAGYGR 396

Query: 472 HGN 474
           HGN
Sbjct: 397 HGN 399


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 251/424 (59%), Gaps = 15/424 (3%)

Query: 113 LHRLIPTNLLRK----NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           L RLI T ++++    +  I S LL +Y+ FG  + A+ +F  M  R   A  W S+ISG
Sbjct: 360 LGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVA--WGSVISG 417

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           + +  +Y++A+  +  ME + V+PD      ++ AC GL  + +G  +H   ++ G   D
Sbjct: 418 FCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLD 477

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            FV ++L+DMY+K G   +A  +F  +  K+L+++NS+++ Y  + L   + ++F  ++ 
Sbjct: 478 VFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLR 537

Query: 289 NGFDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           N   PD V+ +S+LA     A+LL+ G  VHG+++R  + +DL + N+LI +Y K G L 
Sbjct: 538 NDLYPDSVSFTSVLAAISSVAALLK-GKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLK 596

Query: 345 QACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +F+ + +K++V+WNS+I    +H +  +A+  F++M   G+ PD +TF+SLLS+C 
Sbjct: 597 YAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCN 656

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G ++ G  LF +M  K+GI PR+EHY  +V+LYGRAG + +AYS  V+ M  E    +
Sbjct: 657 HSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSF-VKNMPVEPDRSI 715

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           W +LL +C +H N+ +GE  A KL  +EP    N+  L+ +YG A   D    +   + +
Sbjct: 716 WLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKE 775

Query: 522 RGLE 525
           +GL+
Sbjct: 776 KGLK 779



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 197/379 (51%), Gaps = 11/379 (2%)

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           Q    + G ++H  I  N+L  +  + + L+  Y   G   EA  +F ++ +R+     W
Sbjct: 151 QSSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIV-AW 209

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N +I G+ E G +E+++  Y   + E V+    +F   L AC     +  G++VH DA++
Sbjct: 210 NVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIK 269

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GF  D +V  +L+ MY KC  I  A  VF+ + +K++  +N++++ Y+ +G   +A  I
Sbjct: 270 VGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRI 329

Query: 283 FRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           ++ M L     D   I ++L ++S   L  +G  +H  +++R ++  + I ++L+ +YSK
Sbjct: 330 YKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSK 389

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G  + A  +F  M ++DVV+W S+I     + K  EAL +F  ME D V PD     S+
Sbjct: 390 FGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASI 449

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           +SAC  L  V +G  +   ++ K G+   V   + ++++Y + G  + A   I   M  +
Sbjct: 450 ISACTGLEKVDLGCTIHGFVI-KSGLQLDVFVASSLLDMYSKFGFPERA-GNIFSDMPLK 507

Query: 457 ASPVVWGALLYACYLHGNV 475
            + V W +++ +CY   N+
Sbjct: 508 -NLVAWNSII-SCYCRNNL 524



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 194/404 (48%), Gaps = 39/404 (9%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I+ L+   ++ +     T+ SLL+ C  L  +++G  +H  I T  L  ++ I+S L+ +
Sbjct: 38  IEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINI 97

Query: 136 YATFGLIDEAHQVFDQMSNRTAF---AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           Y   G   +A +VFDQ+            WNS+I GY   G+ E+ +  + +M+  G + 
Sbjct: 98  YVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE 157

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
                               G+++H   VR    FD F+  AL+D Y KCG   +AR +F
Sbjct: 158 --------------------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLF 197

Query: 253 DRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----- 306
            ++ ++ +++++N M+ G+  +GL   + + +   +L   +   V  SS     S     
Sbjct: 198 KKLKDRSNIVAWNVMIGGFGENGLWENSLEYY---LLAKTENVKVVSSSFTCTLSACGQG 254

Query: 307 -LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             +  G QVH   ++ G E D  +  SL+ +Y K   ++ A  +F+ +P K++  WN++I
Sbjct: 255 EFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALI 314

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
            A+  +   ++AL  ++QM+   VL D  T +++L++ +  G   +G RL    + K  +
Sbjct: 315 SAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG-RLIHTEIVKRPL 373

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              +   + ++ +Y + G  D  Y+  +     E   V WG+++
Sbjct: 374 QSSITIQSALLTMYSKFG--DSNYANSIFSTMKERDVVAWGSVI 415



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 177/363 (48%), Gaps = 41/363 (11%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           ++  AS++  C  L+ V+ G  +H  +  + L+ +  ++S LL +Y+ FG  + A  +F 
Sbjct: 443 SDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFS 502

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  +   A  WNS+IS Y      + +I L+ Q+    + PD  +F  VL A + +  +
Sbjct: 503 DMPLKNLVA--WNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAAL 560

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G+ VH   VR    FD  V N L+DMY KCG +  A+ +F+RI  K+L+++NSM+ GY
Sbjct: 561 LKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGY 620

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWV-LRRGVEWD 326
             HG   +A ++F  M  +G  PD V   S+L++   + L+  G  +   + ++ G+E  
Sbjct: 621 GSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPR 680

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386
           +    +++ +Y + G L  A     +MP                               V
Sbjct: 681 MEHYVNIVDLYGRAGCLGDAYSFVKNMP-------------------------------V 709

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEA 445
            PD   ++SLL +C    ++++GE + + ++    + P +  +Y  ++NLYG A L D  
Sbjct: 710 EPDRSIWLSLLCSCKIHLNLELGEMVANKLLN---MEPSKGSNYVQLLNLYGEAELWDRT 766

Query: 446 YSM 448
            ++
Sbjct: 767 ANL 769



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 32/304 (10%)

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           +Y +A+ LY    +  V   +FT+P +LKACA L  ++ G+ +H   +  G   D ++ +
Sbjct: 36  QYIEALKLY---TKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITS 92

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNK-----DLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
           +L+++Y KCG    A  VFD++        D+  +NS++ GY   G L E    F  M  
Sbjct: 93  SLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQS 152

Query: 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           +G+                 + G Q+H +++R  + +D  +  +LI  Y K G+  +A +
Sbjct: 153 SGY-----------------KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARY 195

Query: 349 LFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
           LF  +  + ++V+WN +I    ++     +L Y+   + + V     +F   LSAC    
Sbjct: 196 LFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGE 255

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            V  G+++    + K G       +  ++ +YG+  +I+ A  +  E  + E    +W A
Sbjct: 256 FVSFGKQVHCDAI-KVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIE--LWNA 312

Query: 465 LLYA 468
           L+ A
Sbjct: 313 LISA 316



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 7/164 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++N +   + +F S+L     + A+  G  +H  +    +  +  + + L+ +Y   GL+
Sbjct: 536 LRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLL 595

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A  +F+++S +   A  WNS+I GY   GE   AI L+ +M   G++PD  TF  +L 
Sbjct: 596 KYAQHIFERISEKNLVA--WNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLS 653

Query: 203 ACAGLGLIRVGEKVHL-DAVRFGFGFDGFVLN--ALVDMYAKCG 243
           +C   GLI   E +HL + ++  FG +  + +   +VD+Y + G
Sbjct: 654 SCNHSGLIE--EGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAG 695


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 168/507 (33%), Positives = 273/507 (53%), Gaps = 56/507 (11%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLET----CYQLKAVEHGIKLHRLIPTNLLR 123
           KL  L+ +   L+S+  +  T +     S+LET    C+ LK       L ++I T  + 
Sbjct: 2   KLSKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNR--ILSQMILTGFI- 58

Query: 124 KNKGISSKLLRLY--ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
            +   +S+LL+    + F  +D + Q+FD++ N   F   WN+++  Y +    E A+ L
Sbjct: 59  SDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFM--WNTMMRAYIQSNSAEKALLL 116

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           Y  M +  V PD +T+P V++ACA   L   G+++H   ++ GF  D +V N L++MYA 
Sbjct: 117 YKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAV 176

Query: 242 CGDIVKARTVFD----------------------------------RIGNKDLISYNSML 267
           CG++  AR +FD                                   +  KD++S+++++
Sbjct: 177 CGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALI 236

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
           +GY  +G+  EA  +F  M  NG   D V + S+L   A+ S+++ G  +HG V+R G+E
Sbjct: 237 SGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIE 296

Query: 325 WDLCIANSLIVVYS----KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
             + + N+LI +YS    K G ++ A  +F+ M +K V SWN++I   + +     +L  
Sbjct: 297 SYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDM 356

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M+ +GV+P+ +TF+ +L AC H+G V  G   F+ M+EK+GI P V+HY CMV+L G
Sbjct: 357 FSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLG 416

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAGL++EA  +I E M        WGALL AC  HG+  MGE   +KL EL+PD++    
Sbjct: 417 RAGLLNEAEKLI-ESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHV 475

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  I+ + G  +DV  V  M+  +G+
Sbjct: 476 LLSNIFASKGDWEDVLEVRGMMKQQGV 502


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 256/467 (54%), Gaps = 36/467 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF++LL    +   V+ G ++H  +          + S L+ +Y+  G+I  A +VFD++
Sbjct: 145 TFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL 204

Query: 153 -----------------------SNRTAF------AFPWNSLISGYAELGEYEDAIALYF 183
                                  S R  F      +  W S+I+G+ + G   DAI ++ 
Sbjct: 205 PEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFR 264

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M+ E ++ DQ+TF  VL AC G+  ++ G++VH   +R  +  + FV +ALVDMY KC 
Sbjct: 265 EMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK 324

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
           +I  A  VF ++  K+++S+ +ML GY  +G   EA   F  M   G +PD   + S++ 
Sbjct: 325 NIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVIS 384

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             AN + L  GAQ H   L  G+   + ++N+L+ +Y K G ++ +  LF+ +  KD V+
Sbjct: 385 SCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVT 444

Query: 361 WNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W +++  ++   K +E +  FE M   G+ PD +TF+ +LSAC+  G V+ G ++F  M+
Sbjct: 445 WTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMI 504

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
            ++GI P  +HY CM++L+ RAG I+EA + I  KM F    + W  LL +C  +GN+ +
Sbjct: 505 NEHGIVPIQDHYTCMIDLFSRAGRIEEARNFI-NKMPFSPDAISWATLLSSCRFYGNMDI 563

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           G+ AA+ L EL+P N  ++ LL  +Y   G+ ++V R+ + + D+GL
Sbjct: 564 GKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGL 610



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 216/444 (48%), Gaps = 54/444 (12%)

Query: 92  ETF--ASLLETCYQLKAVEHGIKLHRLIP-TNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ETF   +L+ +  +L ++ +  K+   +P  NL   N      +L  Y+  G + E   +
Sbjct: 43  ETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNT-----ILSAYSKLGRVSEMEYL 97

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGE-YEDAIALYFQMEEEG-VEPDQFTFPRVLKACAG 206
           FD M  R   +  WNSLISGYA  G  Y+   A    ++ +G    ++ TF  +L   + 
Sbjct: 98  FDAMPRRDGVS--WNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASK 155

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN-- 264
            G +++G ++H   V+FGF    FV + LVDMY+K G I  AR VFD +  K+++ YN  
Sbjct: 156 RGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTL 215

Query: 265 -----------------------------SMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
                                        SM+TG+  +GL  +A DIFR M L     D 
Sbjct: 216 IMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQ 275

Query: 296 VAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
               S+L        L+ G QVH +++R   + ++ +A++L+ +Y K   +  A  +F  
Sbjct: 276 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKK 335

Query: 353 MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M  K+VVSW +++  + ++    EA+  F  M++ G+ PD  T  S++S+CA+L S++ G
Sbjct: 336 MTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG 395

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL--Y 467
            + F       G+   +     +V LYG+ G I++++ +  E + F+   V W AL+  Y
Sbjct: 396 AQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE-ISFK-DEVTWTALVSGY 452

Query: 468 ACYLHGNVCMGETAAQKLFELEPD 491
           A +   N  +G   +     L+PD
Sbjct: 453 AQFGKANETIGLFESMLAHGLKPD 476



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 103/195 (52%), Gaps = 12/195 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  S++ +C  L ++E G + H    T+ L     +S+ L+ LY   G I+++
Sbjct: 371 GIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDS 430

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H++F+++S +      W +L+SGYA+ G+  + I L+  M   G++PD+ TF  VL AC+
Sbjct: 431 HRLFNEISFKDEVT--WTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV-----LNALVDMYAKCGDIVKARTVFDRIG-NKD 259
             GL+  G ++    +       G V        ++D++++ G I +AR   +++  + D
Sbjct: 489 RAGLVEKGNQIFESMIN----EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPD 544

Query: 260 LISYNSMLTGYIHHG 274
            IS+ ++L+    +G
Sbjct: 545 AISWATLLSSCRFYG 559


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 255/429 (59%), Gaps = 9/429 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL++  + +A   G+  H  I    LR +   S+ L+ +Y+  GL++ A ++FD+M  R+
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN+++  + + G+ E A+ L+ QM++EG    +FT   V+ ACA    +   +++
Sbjct: 86  LVS--WNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQL 143

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  A++     + FV  AL+D+YAKCG +  A  VF+ +  +  ++++SM+ GY+ + L 
Sbjct: 144 HGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELY 203

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSL 333
            EA  +F      G + +   ISS L+  +       G QV     + G+  ++ + +SL
Sbjct: 204 EEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSL 263

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           I +Y+K G +++A  +F  + +K+VV WN+I+     H +  EA+IYFE+M++ G+ P+ 
Sbjct: 264 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPND 323

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +T++S+LSAC+HLG V+ G + F +M+  + +SP V HY+CMV++ GRAGL+ EA   I 
Sbjct: 324 ITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFI- 382

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           ++M F+A+  +WG+LL +C ++ N+ + E AA+ LFE+EP N  N  LL  IY    R +
Sbjct: 383 DRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWE 442

Query: 511 DVERVERML 519
           +V R   +L
Sbjct: 443 EVARARNLL 451



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 7/287 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G +    T +S++  C     V    +LH       L  N  + + LL +YA  GL+ 
Sbjct: 114 KEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 173

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A+ VF+ M  R+     W+S+++GY +   YE+A+ L+ + +  G+E +QFT    L A
Sbjct: 174 DANLVFECMPERSDVT--WSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSA 231

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    +  G++V   + + G G + FV+++L+DMYAKCG I +A TVF  +  K+++ +
Sbjct: 232 CAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLW 291

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR 320
           N++L+G+  H   +EA   F  M   G  P+ +   S+L+  S   L+  G +    ++R
Sbjct: 292 NAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIR 351

Query: 321 -RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
              V  ++   + ++ +  + G L +A    D MP     S W S++
Sbjct: 352 VHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 398


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 244/439 (55%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L     LKA+  G  +H             +++ +L  Y   G +  A  VF  M
Sbjct: 245 TLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+R   +  WN++I GYA+ GE E+A A + +M +EGVEP   +    L ACA LG +  
Sbjct: 305 SSRNVVS--WNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLER 362

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH        GFD  V+N+L+ MY+KC  +  A +VF  + +K ++++N+M+ GY  
Sbjct: 363 GRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQ 422

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G + EA ++F  M  +   PD    V++ + LA+ S+ R    +HG  +R  ++ ++ +
Sbjct: 423 NGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFV 482

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
             +LI  ++K G +  A  LFD M ++ V++WN++I  +  +    EAL  F +M+   V
Sbjct: 483 CTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSV 542

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+S+++AC+H G V+ G   F  M E YG+ P ++HY  MV+L GRAG +D+A+
Sbjct: 543 KPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAW 602

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + M  +    V GA+L AC +H NV +GE  A +LF+L+PD+     LL  +Y +A
Sbjct: 603 KFI-QDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASA 661

Query: 507 GRLDDVERVERMLVDRGLE 525
              D V RV   +  +G++
Sbjct: 662 SMWDKVARVRTAMEKKGIQ 680



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 241/478 (50%), Gaps = 55/478 (11%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F  LL+   +   +  G ++H ++ TN  + N    + ++ LYA    I++A+++F++M 
Sbjct: 145 FTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP 204

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R   +  WN++++GYA+ G    A+ +  QM+E G +PD  T   VL A A L  +R+G
Sbjct: 205 QRDLVS--WNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  A R GF +   V  A++D Y KCG +  AR VF  + +++++S+N+M+ GY  +
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   EAF  F  M+  G +P  V++   L   AN   L  G  VH  +  + + +D+ + 
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVM 382

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           NSLI +YSK  ++D A  +F ++  K VV+WN++I  ++++   +EAL  F +M+   + 
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIK 442

Query: 388 PDHLTFVSLLSACAHL-----------------------------------GSVKVGERL 412
           PD  T VS+++A A L                                   G+++   +L
Sbjct: 443 PDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKL 502

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACY 470
           F +M E++ I+     +  M++ YG  G   EA  +  E       P  + + +++ AC 
Sbjct: 503 FDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557

Query: 471 LHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDRGL 524
             G V  G    + + E   LEP  +H +  ++ + G AGRLDD  + ++ M V  G+
Sbjct: 558 HSGLVEEGMYYFESMKENYGLEPTMDH-YGAMVDLLGRAGRLDDAWKFIQDMPVKPGI 614



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 211/413 (51%), Gaps = 30/413 (7%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIP---TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           A LLE C  LK      +LH+++P    N         +KL+ L+  F  I EA +VF+ 
Sbjct: 48  AILLELCTSLK------ELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEP 101

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + ++      +++++ GYA+     DA+  Y +M  + V P  + F  +L+       +R
Sbjct: 102 VEHK--LDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLR 159

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G ++H   +  GF  + F + A+V++YAKC  I  A  +F+R+  +DL+S+N+++ GY 
Sbjct: 160 RGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYA 219

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G    A  +   M   G  PD + + S+L   A+   LRIG  +HG+  R G E+ + 
Sbjct: 220 QNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN 279

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           +A +++  Y K G +  A  +F  M  ++VVSWN++I  ++++    EA   F +M  +G
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P +++ +  L ACA+LG ++ G  +  ++ EK  I   V     ++++Y +   +D A
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEK-KIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDN 492
            S+         + V W A++     +G  C+ E  A  LF      +++PD+
Sbjct: 399 ASVFGNLK--HKTVVTWNAMILGYAQNG--CVNE--ALNLFCEMQSHDIKPDS 445



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 136/275 (49%), Gaps = 6/275 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     +    L  C  L  +E G  +HRL+    +  +  + + L+ +Y+    +D A
Sbjct: 339 GVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF  + ++T     WN++I GYA+ G   +A+ L+ +M+   ++PD FT   V+ A A
Sbjct: 399 ASVFGNLKHKTVVT--WNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALA 456

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L + R  + +H  A+R     + FV  AL+D +AKCG I  AR +FD +  + +I++N+
Sbjct: 457 DLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNA 516

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRR- 321
           M+ GY  +G   EA D+F  M      P+ +   S++A  S   L+  G      +    
Sbjct: 517 MIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENY 576

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           G+E  +    +++ +  + G+LD A      MP K
Sbjct: 577 GLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 253/449 (56%), Gaps = 11/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+   + T +S L    +L+  + G ++H       L  +  I++ L+ +YA  G  
Sbjct: 135 IDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHS 194

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA  VF ++  +   +  WN++I+ +A+      A+ L  QM++ G  P+  TF  VL 
Sbjct: 195 TEASNVFYKLDAKNVVS--WNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLP 252

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA +GL+R G+++H  ++  G  FD FV NAL DMYAK G +  AR VFD    +D +S
Sbjct: 253 ACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVS 311

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           YN ++ G+       E+  +F  M L G   D V+    L   AN + ++ G ++HG++L
Sbjct: 312 YNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLL 371

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALI 376
           R+     L +ANSL+  Y+K G++  A  +FD M  KDV SWN++I  +    E   A+ 
Sbjct: 372 RKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAID 431

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M +D V  D ++F+++LSAC+H G ++ G + F  +  + GI P   HYACMV+L 
Sbjct: 432 LFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKAR-GIEPTQMHYACMVDLL 490

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAGL++EA  +I + +       +WGALL AC ++GN+ +   AA+ LFEL+P++   +
Sbjct: 491 GRAGLMEEAAELI-KGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYY 549

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  +Y   GR D+  R+  ++  RG++
Sbjct: 550 TLLSNMYAETGRWDEANRIRELMKSRGVK 578



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 163/299 (54%), Gaps = 19/299 (6%)

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M +RT  AF WN+LI GY+  G     + +Y QM   GV PD  TFP VLKACA    +R
Sbjct: 1   MHHRTT-AFLWNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVR 58

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G +VH   V+ GF  D FV N L+  Y  CG +  A  VFD +  KDL+S+N+M+  + 
Sbjct: 59  KGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFS 118

Query: 272 HHGL-LVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDL 327
            +G    +A D+FR MI  G  P+ + ISS   +L      + G +VHG  +R G+E D+
Sbjct: 119 VNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDI 178

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERD 384
            IANSLI +Y+K G   +A  +F  +  K+VVSWN++I   +++   L+      QM+  
Sbjct: 179 FIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDY 238

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           G LP+ +TF ++L ACA +G V+ G+           I  R  H  C  +L+    L D
Sbjct: 239 GELPNSVTFTNVLPACARMGLVRPGKE----------IHARSIHMGCAFDLFVSNALTD 287



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 230/482 (47%), Gaps = 53/482 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+     TF  +L+ C     V  G ++H  +       +  + + LL  Y   G +
Sbjct: 33  VRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGL 92

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELG-EYEDAIALYFQMEEEGVEPDQFTFPRVL 201
            +A +VFD+M  +   +  WN++I  ++  G  Y DA+ ++  M +EG++P+  T    L
Sbjct: 93  RDAGRVFDEMPEKDLVS--WNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFL 150

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
                L   + G +VH  ++R G   D F+ N+L+DMYAK G   +A  VF ++  K+++
Sbjct: 151 PVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVV 210

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+N+M+  +  +   + A  + R M   G  P+ V  +++L   A   L+R G ++H   
Sbjct: 211 SWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARS 270

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
           +  G  +DL ++N+L  +Y+K G L  A  +FD    +D VS+N +I  HS+     E+L
Sbjct: 271 IHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNILIVGHSQTSDCSESL 329

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK---------------Y 420
             F +M+  G+  D+++F+  LSACA+L ++K G+ +   ++ K               Y
Sbjct: 330 SLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFY 389

Query: 421 GISPR---------------VEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWG 463
               R               V  +  M+  YG  G +D A  +   + K + E   V + 
Sbjct: 390 TKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFI 449

Query: 464 ALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           A+L AC  HG +       +K F+      +EP   H +  ++ + G AG +++   + +
Sbjct: 450 AVLSACS-HGGLL---EKGRKYFDELKARGIEPTQMH-YACMVDLLGRAGLMEEAAELIK 504

Query: 518 ML 519
            L
Sbjct: 505 GL 506


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 238/445 (53%), Gaps = 30/445 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI V   T  S+L  C +   +  G  +H L   +   +    S+ LL +Y+  G +D A
Sbjct: 108 GIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 167

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF++M  R   +  W S+I+GY   G  + AI L  QME+EGV+ D      +L ACA
Sbjct: 168 LRVFEKMGERNVVS--WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACA 225

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH          + FV NAL+DMYAKCG +  A +VF  +  KD+IS+N+
Sbjct: 226 RSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNT 285

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+                         PD   ++ IL   A+ S L  G ++HG++LR G
Sbjct: 286 MV---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNG 324

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+L+ +Y K G L  A  LFD +P KD+VSW  +I     H   +EA+  F 
Sbjct: 325 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 384

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD ++F+S+L AC+H G ++ G R F +M   + I P++EHYACMV+L  R 
Sbjct: 385 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 444

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  I E +       +WGALL  C ++ ++ + E  A+++FELEP+N   + LL
Sbjct: 445 GNLSKAYKFI-ETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 503

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A + ++V+R+   +  +GL
Sbjct: 504 ANIYAEAEKWEEVKRMREKIGKKGL 528



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 178/358 (49%), Gaps = 36/358 (10%)

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A ++FD++ +R   +  WNS+ISGY   G  E  + +Y QM   G++ D  T   VL 
Sbjct: 64  ESASELFDKLCDRDVIS--WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA  G + +G+ VH  A++  F       N L+DMY+KCGD+  A  VF+++G ++++S
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + SM+ GY   G    A  + + M   G   D VAI+SIL   A +  L  G  VH ++ 
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE 379
              +  +L + N+L+ +Y+K G ++ A  +F  M  KD++SWN+++              
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE------------ 289

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGR 438
                 + PD  T   +L ACA L +++ G+ +   ++     S R  H A  +V+LY +
Sbjct: 290 ------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVK 341

Query: 439 AGLIDEA---YSMIVEKMEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPD 491
            G++  A   + MI  K       V W  ++  Y  + +GN  +      +   +EPD
Sbjct: 342 CGVLGLARLLFDMIPSK-----DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 394



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 129/271 (47%), Gaps = 58/271 (21%)

Query: 235 LVDMYAKCGDIVKARTV------------------------------------------- 251
           LV  YA CGD+ + R V                                           
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 252 --------FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
                   FD++ ++D+IS+NSM++GY+ +GL      I++ M+  G D D   I S+L 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             A +  L +G  VH   ++   E  +  +N+L+ +YSK G LD A  +F+ M +++VVS
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W S+I  +++D     A+I  +QME++GV  D +   S+L ACA  GS+  G+ +    +
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-I 240

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +   ++  +     ++++Y + G ++ A S+
Sbjct: 241 KANNMASNLFVCNALMDMYAKCGSMEGANSV 271


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 237/443 (53%), Gaps = 39/443 (8%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + T  S L +C  LK +E GIK+H+L+  N L++   + + L+ +Y+  G IDEA  VF 
Sbjct: 285 SATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFA 344

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +   +      W S+I+GY   G  + A+AL   M+ +GV P+  T   +L ACA     
Sbjct: 345 ETKEKDVIT--WTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACA----- 397

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
                                  +L  MYAKC  +  +  VF +   K  + +N++L+G 
Sbjct: 398 -----------------------SLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGL 434

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV---HGWVLRRGVEWDL 327
           IH+ L  EA  +F+ M++   + +    +S++   ++L    QV   H +++R G    +
Sbjct: 435 IHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKI 494

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHA---HSKDHEALIYFEQME 382
            +   LI +YSK G LD A  +FD +P  +KD++ W+ +I     H     A++ F QM 
Sbjct: 495 AVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMV 554

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ P+ +TF S+L AC+H G V  G  LF  M+E Y  SP   HY C+V+L GRAG +
Sbjct: 555 HSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRL 614

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           DEAY +I + M F+ +  +WGALL AC +H NV +GE AA++LFELEP++  N+ LL  I
Sbjct: 615 DEAYDLI-KSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANI 673

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
           Y   GR  D E V  ++   GL 
Sbjct: 674 YAAVGRWKDAENVRHIMSKIGLR 696



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 162/283 (57%), Gaps = 9/283 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S L   YA  G +  A ++FD +S+ + F   WN++I  Y + G + DA+ ++  M  
Sbjct: 119 LPSHLAVSYAFCGCVPLARKLFDDLSDPSLFL--WNAIIKMYVDKGFHFDALRVFDSMIC 176

Query: 188 EG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            G   PD++TFP V+KAC+ + ++ VG  +H  A+  GF  + FV N+L+ MY  CG + 
Sbjct: 177 SGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVG 236

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR VF+ +  + ++S+N+M++G+  +G   EA  +F  M+    +PD   I S L +  
Sbjct: 237 LARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCG 296

Query: 307 LLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            L+   +G +VH  V +  ++  + + N+L+ +YS+ G +D+A  +F    +KDV++W S
Sbjct: 297 YLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTS 356

Query: 364 IIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
           +I+ +        AL     M+ DGV+P+ +T  SLLSACA L
Sbjct: 357 MINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASL 399



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 12/244 (4%)

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPD--- 294
           YA CG +  AR +FD + +  L  +N+++  Y+  G   +A  +F  MI +G F PD   
Sbjct: 127 YAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYT 186

Query: 295 -PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            P+ I +  +  S+L +G  +HG  L  G   ++ + NSL+ +Y   GK+  A  +F+ M
Sbjct: 187 FPLVIKAC-SVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM 245

Query: 354 PQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            ++ VVSWN++I     + +  EAL  F  M    V PD  T VS L +C +L  +++G 
Sbjct: 246 LKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGI 305

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           ++   +V+K  +  ++E    +V++Y R G IDEA  +  E  E +   + W +++    
Sbjct: 306 KVHK-LVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDV--ITWTSMINGYI 362

Query: 471 LHGN 474
           ++GN
Sbjct: 363 MNGN 366


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 257/449 (57%), Gaps = 11/449 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF++ L+ C  L  ++ G ++H +           + + ++ +Y+  G I+E
Sbjct: 67  SGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINE 126

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F+ M  R   +  WN++I+GY   G  E A+ L+ +M+E G   D+FTF   LKAC
Sbjct: 127 AACMFEVMPVRNLIS--WNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKAC 184

Query: 205 AGLGLIRVGEKVHLDAVRFGFGF--DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           + LG I+ G ++H   +  GF +  +  V  AL+D+Y KCG +  AR VF  I  K +IS
Sbjct: 185 SDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVIS 244

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + +++ GY   G L E+ ++FR +  +    D   +SS++   A+ +L++ G Q+H + +
Sbjct: 245 WTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAI 304

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           +     D+ + NS++ +Y K G +++A  LF  MP ++V+SW  +I  + K     EA+ 
Sbjct: 305 KVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIR 364

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M+ D   PD +T++++L  C+H G V+ G+  FS +   +GI  RVEHYACMV+L 
Sbjct: 365 LFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLL 424

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA ++ V+ M  EA+  +W  LL AC +HG++ +G+     L  L+ +N  N+
Sbjct: 425 GRAGRLKEAKNL-VDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNY 483

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++  IY +AG   + ER+  ++  + L+
Sbjct: 484 VMMSNIYADAGYWKECERIRELVKSKKLK 512



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 197/376 (52%), Gaps = 22/376 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +S+ L+ +Y   G +  A  VFD+M  R   +  W +L+ G+ + G   +++ L+ +M  
Sbjct: 9   LSNDLIVMYGKCGRLGVACDVFDRMLKRNVVS--WTALMCGHIQNGNPLESLLLFSKMGL 66

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV+P+ FTF   LKAC  L  + +G ++H   V+ GF     V N+++DMY+KCG I +
Sbjct: 67  SGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINE 126

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A  +F+ +  ++LIS+N+M+ GY   G   +A  +F+ M   G   D    +S L   S 
Sbjct: 127 AACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSD 186

Query: 308 L---RIGAQVHGWVLRRGVEWDL--CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           L   + G Q+H +++  G  + +   +A +LI +Y K GKL  A  +F H+ +K V+SW 
Sbjct: 187 LGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWT 246

Query: 363 SIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I  ++++    E++  F Q+    +  D     S++   A    V+ G+++ +  ++ 
Sbjct: 247 ALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK- 305

Query: 420 YGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVC 476
             +   V+   C  ++++Y + G+I+EA  +     E  A  V+ W  ++     HG   
Sbjct: 306 --VPSGVDISVCNSILDMYLKCGMINEAERLFS---EMPARNVISWTVMITGYGKHG--- 357

Query: 477 MGETAAQKLFELEPDN 492
           +G+ A +   E++ D+
Sbjct: 358 LGKEAIRLFDEMQLDS 373



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 146/265 (55%), Gaps = 19/265 (7%)

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GFGFD  + N L+ MY KCG +  A  VFDR+  ++++S+ +++ G+I +G  +E+  +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 283 FRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M L+G  P+    S+ L    LL    IG Q+H   ++ G +    + NS+I +YSK
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSL 396
            G++++A  +F+ MP ++++SWN++I  ++      +AL+ F++M+  G   D  TF S 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 397 LSACAHLGSVKVGERLFSVMVEK---YGISPRVEHYACMVNLYGRAG---LIDEAYSMIV 450
           L AC+ LG++K G ++ + ++     Y ++  V     +++LY + G   +    +S I 
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVA--GALIDLYVKCGKLFMARRVFSHIE 238

Query: 451 EKMEFEASPVVWGALLYACYLHGNV 475
           EK       + W AL+      GN+
Sbjct: 239 EK-----HVISWTALILGYAQEGNL 258


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 136/386 (35%), Positives = 233/386 (60%), Gaps = 9/386 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G I+   Q+FD MS+ +  +  WN+++SGY++   +++A+ L+ +M+   V PD+ T   
Sbjct: 367 GDIEAGRQMFDGMSSPSLSS--WNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 424

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L + AG+ L+  G +VH  + +  F  D ++ + L+ MY+KCG +  A+ +FDRI   D
Sbjct: 425 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 484

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           ++ +NSM+ G   + L  EAF  F+ M   G  P   + +++L   A  S L  G QVH 
Sbjct: 485 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 544

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
            + R G   D  + ++LI +YSK G +D A W+FD M  K+ V+WN +IH ++++    E
Sbjct: 545 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDE 604

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A++ +E M   G  PD +TFV++L+AC+H G V  G ++F+ M +++G+ P V+HY C++
Sbjct: 605 AVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 664

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +  GRAG + EA  ++++KM  +  P++W  LL +C ++ +V +   AA++LF L+P N 
Sbjct: 665 DSLGRAGRLHEA-EVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNS 723

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
             + LL  IY + GR DD + V  ++
Sbjct: 724 APYVLLANIYSSLGRWDDAKAVRELM 749



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 200/420 (47%), Gaps = 55/420 (13%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +  +T   ASLL+TC   KA   G  +H  +  + L  +  +S++L+  YA    ID + 
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASR 60

Query: 147 QVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYED 177
           ++FDQM  R  + +                              WN+LIS     G  + 
Sbjct: 61  RLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQK 120

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           A+ +Y++M  EG  P  FT   VL AC  L  +  G + H  +++ G   + +V NAL+ 
Sbjct: 121 ALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLG 180

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
           MYAKC  I  A   F  +   + +S+ +M+ G      + EAF +FR M+ N    D V+
Sbjct: 181 MYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVS 240

Query: 298 ISSILANASLLRI-----------------GAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
           +SS+L   S                     G QVH   ++ G E DL + NSL+ +Y+K+
Sbjct: 241 LSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKN 300

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G +D A  +F +MP+  VVSWN +I  +   S+  +A+ Y ++M+  G  PD +T+V++L
Sbjct: 301 GNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNML 360

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            AC   G ++ G ++F  M      SP +  +  +++ Y +     EA  +  E M+F +
Sbjct: 361 VACIKSGDIEAGRQMFDGMS-----SPSLSSWNTILSGYSQNENHKEAVKLFRE-MQFRS 414



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 185/406 (45%), Gaps = 60/406 (14%)

Query: 83  VQNGITVQTETFASLLETCYQ--------------LKAVEHGIKLHRLIPTNLLRKNKGI 128
           ++N I V + + +S+L  C +              L +  HG ++H L   +    +  +
Sbjct: 230 LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHL 289

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ LL +YA  G +D A  +F  M   +  +  WN +I+GY +  +   AI    +M+  
Sbjct: 290 NNSLLDMYAKNGNMDSAEMIFVNMPEVSVVS--WNVMIAGYGQKSQSSKAIEYLQRMQYH 347

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G EPD+ T+  +L AC                                    K GDI   
Sbjct: 348 GFEPDEITYVNMLVACI-----------------------------------KSGDIEAG 372

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANA 305
           R +FD + +  L S+N++L+GY  +    EA  +FR M      PD   ++   S LA  
Sbjct: 373 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 432

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
            LL  G QVH    +     D+ +A+ LI +YSK GK++ A  +FD + + D+V WNS++
Sbjct: 433 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMM 492

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                +S D EA  +F++M   G+ P   ++ ++LS CA L S+  G ++ S  + + G 
Sbjct: 493 AGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS-QIAREGY 551

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
                  + ++++Y + G +D A    V  M    + V W  +++ 
Sbjct: 552 MNDAFVGSALIDMYSKCGDVDAA--RWVFDMMLGKNTVTWNEMIHG 595



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 153/284 (53%), Gaps = 15/284 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A +L +   +  +E G ++H +    + R +  ++S L+ +Y+  G ++ A ++FD++
Sbjct: 421 TLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRI 480

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +        WNS+++G +     ++A   + +M E+G+ P QF++  VL  CA L  +  
Sbjct: 481 AELDIVC--WNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQ 538

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH    R G+  D FV +AL+DMY+KCGD+  AR VFD +  K+ +++N M+ GY  
Sbjct: 539 GRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQ 598

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRR-GVEWDL- 327
           +G   EA  ++  MI +G  PD +   ++L   S   L+  G ++   + +  GVE  + 
Sbjct: 599 NGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVD 658

Query: 328 ---CIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
              CI +SL     + G+L +A  L D MP K D + W  ++ +
Sbjct: 659 HYTCIIDSL----GRAGRLHEAEVLIDKMPCKYDPIIWEVLLSS 698



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 137/327 (41%), Gaps = 52/327 (15%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           +E        +L+ C        G+ +H   +R     D F+ N L++ YAKC  I  +R
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASR 60

Query: 250 TVFDRIGNKD-------------------------------LISYNSMLTGYIHHGLLVE 278
            +FD++  +D                               ++S+N++++    +G   +
Sbjct: 61  RLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQK 120

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A  ++  M   GF P    ++S+L+    L     G + HG  ++ G++ ++ + N+L+ 
Sbjct: 121 ALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLG 180

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLT 392
           +Y+K   +  A   F  +P+ + VS+ +++   +     +EA   F  M R+ +  D ++
Sbjct: 181 MYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVS 240

Query: 393 FVSLLSACAHLG-------------SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
             S+L  C+  G             S  V  +    +  K+G    +     ++++Y + 
Sbjct: 241 LSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKN 300

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALL 466
           G +D A  MI   M  E S V W  ++
Sbjct: 301 GNMDSA-EMIFVNMP-EVSVVSWNVMI 325


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/404 (35%), Positives = 228/404 (56%), Gaps = 9/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           IS+ L  +Y+  G ++ A  +FD M  +T  +  WNS++ GY + GE E AIA++ +M E
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVS--WNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG++P   T    L ACA LG +  G+ VH    +   G D  V+N+L+ MY+KC  +  
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LAN 304
           A  +F+ +  +  +S+N+M+ GY  +G + EA + F  M   G  PD   + S+   LA 
Sbjct: 403 ASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAE 462

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S+ R    +HG ++R  ++ ++ +  +L+ +YSK G +  A  LFD +  + V++WN++
Sbjct: 463 LSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAM 522

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H     AL  F++M++  V P+ +T++S++SAC+H G V  G R F  M + YG
Sbjct: 523 IDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYG 582

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P ++HY  MV+L GRAG I EA+  I E M       V+GA   AC +H N+ +GE A
Sbjct: 583 LEPSMDHYGAMVDLLGRAGRIKEAWDFI-ENMPISPGITVYGAXXGACKIHKNIEVGEKA 641

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A+KLFEL PD      LL  IY +  +   V  V + +  +GL+
Sbjct: 642 AKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 245/479 (51%), Gaps = 55/479 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F  LL+ C     ++ G ++H  + TN    N    + ++ +YA    ID+A+++FD+M
Sbjct: 149 NFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WN++I+G+++ G  + A+ L  +M++EG  PD  T   VL A A +GL+ V
Sbjct: 209 PERDLVS--WNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMV 266

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ +H  A+R GF     +  AL DMY+KCG +  AR +FD +  K ++S+NSM+ GY+ 
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   +A  +F  M+  G DP  V I   L   A+   L  G  VH +V +  +  D+ +
Sbjct: 327 NGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISV 386

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            NSLI +YSK  ++D A  +F+++  +  VSWN++I  ++++    EAL  F +M+  G+
Sbjct: 387 MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM 446

Query: 387 LPDHLTFVSLLSACAHL-----------------------------------GSVKVGER 411
            PD  T VS++ A A L                                   G++ +  +
Sbjct: 447 KPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARK 506

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYAC 469
           LF ++ +++ I+     +  M++ YG  GL   A  +   ++K   E + + + +++ AC
Sbjct: 507 LFDMISDRHVIT-----WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561

Query: 470 YLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
              G V  G     + ++ + LEP  +H +  ++ + G AGR+ +  + +E M +  G+
Sbjct: 562 SHSGLVDEGLRHFKSMKQDYGLEPSMDH-YGAMVDLLGRAGRIKEAWDFIENMPISPGI 619



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 216/412 (52%), Gaps = 28/412 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIP---TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           A LLE C  +K      +LH++IP    N L       +KL+ L++ +G I+EA +VF+ 
Sbjct: 53  AVLLELCTSMK------ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEP 106

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + ++      +++++ GYA+    E A+A   +M  + V+P  + F  +LK C     ++
Sbjct: 107 IDDK--LDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLK 164

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H   +   F  + F +  +V+MYAKC  I  A  +FDR+  +DL+S+N+++ G+ 
Sbjct: 165 RGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   +A ++   M   G  PD + + ++L   A+  LL +G  +HG+ +R G    + 
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           I+ +L  +YSK G ++ A  +FD M QK VVSWNS++  + ++ E   A+  FE+M  +G
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P  +T +  L ACA LG ++ G +     V++  +   +     ++++Y +   +D A
Sbjct: 345 IDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNV-----CMGETAAQKLFELEPDN 492
            S I   +    + V W A++     +G V     C  E    K   ++PD+
Sbjct: 404 -SDIFNNLNGR-THVSWNAMILGYAQNGRVSEALNCFSE---MKSLGMKPDS 450



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I   E  ++ GI     T    L  C  L  +E G  +H+ +    L  +  + + L+ +
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y+    +D A  +F+ ++ RT  +  WN++I GYA+ G   +A+  + +M+  G++PD F
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVS--WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   V+ A A L + R  + +H   +R     + FV  ALVDMY+KCG I  AR +FD I
Sbjct: 452 TMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMI 511

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGA 312
            ++ +I++N+M+ GY  HGL   A D+F  M     +P+ +   S+++  S   L+  G 
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 313 QVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           + H   +++  G+E  +    +++ +  + G++ +A    ++MP
Sbjct: 572 R-HFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMP 614


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 230/411 (55%), Gaps = 17/411 (4%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + LL LYA  GL+  A +VFD+M + +    PW +LI+ Y + G+  +A+ +   
Sbjct: 560 NPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTV--PWTALITAYMDAGDLREAVHVARN 617

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
               G+ PD FT  RVL ACA +  +  GE V   A + G     FV  A VD+Y KCG+
Sbjct: 618 AFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGE 677

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + KAR VFD++ +KD +++ +M+ GY  +G   EA D+F  M   G  PD  A++  L+ 
Sbjct: 678 MAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSA 737

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----SLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            +  R+GA   G    R V+WD  + N     +LI +Y+K G   +A  +F  M +KD++
Sbjct: 738 CT--RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 795

Query: 360 SWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
            WN++I       H K   AL+   QME+ GV  +  TF+ LL +C H G ++ G R F 
Sbjct: 796 VWNAMILGLGMTGHEKIAFALV--GQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 853

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + Y ISPR+EHY CMV+L  RAGL+ EA+ + V+ M   A+ V+ GALL  C +H N
Sbjct: 854 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQL-VDDMPMPANAVILGALLGGCKIHRN 912

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + E   ++L  LEP N  N+ +L  IY N GR +D  ++   +  +G+E
Sbjct: 913 TELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 963



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 10/290 (3%)

Query: 192 PDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           P   T P  LK+ + L   +R GE++H  +++     +  VL +L+ +YAKCG + +A+ 
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASL 307
           VFD + +   + + +++T Y+  G L EA  + R    NG  PD    V + +  A  + 
Sbjct: 583 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 642

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L  G  V     + GV   + +A + + +Y K G++ +A  +FD M  KD V+W +++  
Sbjct: 643 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGG 702

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           ++ +    EAL  F  M+ +G+ PD       LSAC  LG++ +G +   ++     +  
Sbjct: 703 YASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 762

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            V   A ++++Y + G   EA+ ++ ++M  +   +VW A++    + G+
Sbjct: 763 PVLGTA-LIDMYAKCGSTVEAW-VVFQQMR-KKDIIVWNAMILGLGMTGH 809



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 14/229 (6%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           F   P  S  P      A+       L   +    ++  NG+   + T   +L  C ++ 
Sbjct: 584 FDEMPHPSTVPWTALITAY--MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
            +  G  + R      + ++  +++  + LY   G + +A +VFD+M ++ A A  W ++
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA--WGAM 699

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           + GYA  G   +A+ L+  M+ EG++PD +     L AC  LG + +G +    A+R   
Sbjct: 700 VGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ----AIRM-V 754

Query: 226 GFDGFVLN-----ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
            +D F+ N     AL+DMYAKCG  V+A  VF ++  KD+I +N+M+ G
Sbjct: 755 DWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILG 803



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+       A  L  C +L A++ G +  R++  +    N  + + L+ +YA  G   EA
Sbjct: 723 GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEA 782

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF QM  +      WN++I G    G  + A AL  QME+ GV+ +  TF  +L +C 
Sbjct: 783 WVVFQQMRKKDIIV--WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCT 840

Query: 206 GLGLIRVGEK 215
             GLI+ G +
Sbjct: 841 HTGLIQDGRR 850


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 248/439 (56%), Gaps = 10/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L+ C  L  +E G  +H  + T+    +   S+ L+ +YA  G +  + +VF  M
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             + + +  WNS+I+ Y + G +++A+ L F+M +  V+PD  T+  +L     LG + +
Sbjct: 437 KCKDSVS--WNSMINVYIQNGSFDEAMKL-FKMMKTDVKPDSVTYVMLLSMSTQLGDLXL 493

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H D  + GF  +  V N LVDMYAKCG++  +  VF+ +  +D+I++N+++   +H
Sbjct: 494 GKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVH 553

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
                    +   M   G  PD   + SIL   SLL   R G ++HG + + G+E D+ +
Sbjct: 554 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 613

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N LI +YSK G L  +  +F  M  KDVV+W ++I A   + +  +A+  F +ME  G+
Sbjct: 614 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 673

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PDH+ FV+++ AC+H G V+ G   F  M + Y I PR+EHYAC+V+L  R+ L+D+A 
Sbjct: 674 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 733

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I+  M  +    +WGALL AC + G+  + +  ++++ EL PD+   + L+  +Y   
Sbjct: 734 DFILS-MPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAAL 792

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+ D V  + + +  RGL+
Sbjct: 793 GKWDQVRSIRKSIKARGLK 811



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 231/411 (56%), Gaps = 18/411 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-GLIDE 144
           G+   + T +S+L  C  L +VE G  +H LI    ++K+  +++ LL +Y  F GLID 
Sbjct: 270 GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID- 328

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
             ++FD+M  R A +  WN++I GY+++G YE++I L+ +M  +  +PD  T   +L+AC
Sbjct: 329 GRRIFDKMVLRDAVS--WNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQAC 385

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG +  G+ VH   +  G+  D    N L++MYAKCG+++ ++ VF  +  KD +S+N
Sbjct: 386 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 445

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           SM+  YI +G   EA  +F+ M+     PD V    +L+ ++    L +G ++H  + + 
Sbjct: 446 SMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM 504

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--HSKD-HEALIYF 378
           G   ++ ++N+L+ +Y+K G++  +  +F++M  +D+++WN+II +  HS+D +  L   
Sbjct: 505 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 564

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M  +GV PD  T +S+L  C+ L + + G+ +   +  K G+   V     ++ +Y +
Sbjct: 565 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF-KLGLESDVPVGNVLIEMYSK 623

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            G +  ++   V K+      V W AL+ AC ++G    G+ A +   E+E
Sbjct: 624 CGSLRNSFQ--VFKLMKTKDVVTWTALISACGMYGE---GKKAVRAFGEME 669



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 181/335 (54%), Gaps = 9/335 (2%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           KLH LI T  L  +   S+KL+  YA F     +  VF ++++ +   + WNS+I     
Sbjct: 93  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYXWNSIIRALTH 151

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G + +A++LY + +   ++PD +TFP V+ ACAGL    + + +H   +  GFG D ++
Sbjct: 152 NGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYI 211

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NAL+DMY +  D+ KAR VF+ +  +D++S+NS+++GY  +G   EA +I+      G 
Sbjct: 212 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 271

Query: 292 DPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   +SS+L     L     G  +HG + + G++ D+ + N L+ +Y K   L     
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +FD M  +D VSWN++I  +S+     E++  F +M  +   PD LT  S+L AC HLG 
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGD 390

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ++ G+ +   M+   G          ++N+Y + G
Sbjct: 391 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCG 424


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/386 (35%), Positives = 233/386 (60%), Gaps = 9/386 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G I+   Q+FD MS+ +  +  WN+++SGY++   +++A+ L+ +M+   V PD+ T   
Sbjct: 338 GDIEAGRQMFDGMSSPSLSS--WNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 395

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L + AG+ L+  G +VH  + +  F  D ++ + L+ MY+KCG +  A+ +FDRI   D
Sbjct: 396 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 455

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           ++ +NSM+ G   + L  EAF  F+ M   G  P   + +++L   A  S L  G QVH 
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 515

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
            + R G   D  + ++LI +YSK G +D A W+FD M  K+ V+WN +IH ++++    E
Sbjct: 516 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDE 575

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A++ +E M   G  PD +TFV++L+AC+H G V  G ++F+ M +++G+ P V+HY C++
Sbjct: 576 AVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 635

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +  GRAG + EA  ++++KM  +  P++W  LL +C ++ +V +   AA++LF L+P N 
Sbjct: 636 DSLGRAGRLHEA-EVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNS 694

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
             + LL  IY + GR DD + V  ++
Sbjct: 695 APYVLLANIYSSLGRWDDAKAVRELM 720



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 196/393 (49%), Gaps = 30/393 (7%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +  +T   ASLL+TC   KA   G  +H  +  + L  +  +S++L+  YA    ID + 
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASR 60

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK--AC 204
           ++FDQM  R  +   WN+++  Y +  E EDA  L+ +M E  +         + +  AC
Sbjct: 61  RLFDQMPKRDIYT--WNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGAC 118

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L  +  G + H  +++ G   + +V NAL+ MYAKC  I  A   F  +   + +S+ 
Sbjct: 119 GALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFT 178

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI-------------- 310
           +M+ G      + EAF +FR M+ N    D V++SS+L   S                  
Sbjct: 179 AMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSS 238

Query: 311 ---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
              G QVH   ++ G E DL + NSL+ +Y+K+G +D A  +F +MP+  VVSWN +I  
Sbjct: 239 DVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAG 298

Query: 368 H---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           +   S+  +A+ Y ++M+  G  PD +T+V++L AC   G ++ G ++F  M      SP
Sbjct: 299 YGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SP 353

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            +  +  +++ Y +     EA  +  E M+F +
Sbjct: 354 SLSSWNTILSGYSQNENHKEAVKLFRE-MQFRS 385



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 185/406 (45%), Gaps = 60/406 (14%)

Query: 83  VQNGITVQTETFASLLETCYQ--------------LKAVEHGIKLHRLIPTNLLRKNKGI 128
           ++N I V + + +S+L  C +              L +  HG ++H L   +    +  +
Sbjct: 201 LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHL 260

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ LL +YA  G +D A  +F  M   +  +  WN +I+GY +  +   AI    +M+  
Sbjct: 261 NNSLLDMYAKNGNMDSAEMIFVNMPEVSVVS--WNVMIAGYGQKSQSSKAIEYLQRMQYH 318

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G EPD+ T+  +L AC                                    K GDI   
Sbjct: 319 GFEPDEITYVNMLVACI-----------------------------------KSGDIEAG 343

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANA 305
           R +FD + +  L S+N++L+GY  +    EA  +FR M      PD   ++   S LA  
Sbjct: 344 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 403

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
            LL  G QVH    +     D+ +A+ LI +YSK GK++ A  +FD + + D+V WNS++
Sbjct: 404 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMM 463

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                +S D EA  +F++M   G+ P   ++ ++LS CA L S+  G ++ S  + + G 
Sbjct: 464 AGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS-QIAREGY 522

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
                  + ++++Y + G +D A    V  M    + V W  +++ 
Sbjct: 523 MNDAFVGSALIDMYSKCGDVDAAR--WVFDMMLGKNTVTWNEMIHG 566



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 153/284 (53%), Gaps = 15/284 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A +L +   +  +E G ++H +    + R +  ++S L+ +Y+  G ++ A ++FD++
Sbjct: 392 TLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRI 451

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +        WNS+++G +     ++A   + +M E+G+ P QF++  VL  CA L  +  
Sbjct: 452 AELDIVC--WNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQ 509

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH    R G+  D FV +AL+DMY+KCGD+  AR VFD +  K+ +++N M+ GY  
Sbjct: 510 GRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQ 569

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRR-GVEWDL- 327
           +G   EA  ++  MI +G  PD +   ++L   S   L+  G ++   + +  GVE  + 
Sbjct: 570 NGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVD 629

Query: 328 ---CIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
              CI +SL     + G+L +A  L D MP K D + W  ++ +
Sbjct: 630 HYTCIIDSL----GRAGRLHEAEVLIDKMPCKYDPIIWEVLLSS 669


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 236/445 (53%), Gaps = 30/445 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI V   T  S+L  C     +  G  +H L   +   +    S+ LL +Y+  G +D A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGA 305

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF++M  R   +  W S+I+GY   G  + AI L  QME+EGV+ D      +L ACA
Sbjct: 306 LRVFEKMGERNVVS--WTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACA 363

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH          + FV NAL+DMY KCG +  A +VF  +  KD+IS+N+
Sbjct: 364 RSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNT 423

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+                         PD   ++ IL   A+ S L  G ++HG++LR G
Sbjct: 424 MI---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNG 462

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+L+ +Y K G L  A  LFD +P KD+VSW  +I     H   +EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFN 522

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD ++F+S+L AC+H G ++ G R F +M   + I P++EHYACMV+L  R 
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  I E +       +WGALL  C ++ ++ + E  A+++FELEP+N   + LL
Sbjct: 583 GNLSKAYEFI-ETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A + ++V+R+   +  +GL
Sbjct: 642 ANIYAEAEKWEEVKRMREKIGKKGL 666



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 211/461 (45%), Gaps = 83/461 (18%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++T+T++S+L+ C   K++  G K+H +I +N +  ++ +  KL+ LYAT G + E  +V
Sbjct: 97  LETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156

Query: 149 FDQMSNRTAF-------------------------------------------------A 159
           FD M  +  +                                                  
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDV 216

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WNS+ISGY   G  E  + +Y QM   G++ D  T   VL  CA  G + +G+ VH  
Sbjct: 217 ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++  F       N L+DMY+KCGD+  A  VF+++G ++++S+ SM+ GY   G    A
Sbjct: 277 AIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             + + M   G   D VA +SIL   A +  L  G  VH ++    +E +L + N+L+ +
Sbjct: 337 IRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSL 396
           Y+K G +D A  +F  M  KD++SWN++I                    + PD  T   +
Sbjct: 397 YTKCGSMDGANSVFSTMVVKDIISWNTMIGE------------------LKPDSRTMACI 438

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEA---YSMIVEK 452
           L ACA L +++ G+ +   ++     S R  H A  +V+LY + G++  A   + MI  K
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 453 MEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPD 491
                  V W  ++  Y  + +GN  +      +   +EPD
Sbjct: 497 -----DLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPD 532



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 168/380 (44%), Gaps = 60/380 (15%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I+ L+   + G+ +      S+L  C +  ++++G  +H  I  N +  N  + + L
Sbjct: 334 DGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNAL 393

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G +D A+ VF  M  +   +  WN++I      GE               ++P
Sbjct: 394 MDMYTKCGSMDGANSVFSTMVVKDIIS--WNTMI------GE---------------LKP 430

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   +L ACA L  +  G+++H   +R G+  D  V NALVD+Y KCG +  AR +F
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
           D I +KDL+S+  M++GY  HG   EA   F  M   G +PD V+  SIL   S      
Sbjct: 491 DMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS------ 544

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
             H  +L +G  +   + N     ++ + KL+    + D + +   +S            
Sbjct: 545 --HSGLLEQGWRFFYIMKND----FNIEPKLEHYACMVDLLSRTGNLS------------ 586

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV----KVGERLFSVMVEKYGISPRVEH 428
                +E +E   + PD   + +LL  C     +    KV ER+F +  E  G      +
Sbjct: 587 ---KAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTG------Y 637

Query: 429 YACMVNLYGRAGLIDEAYSM 448
           Y  + N+Y  A   +E   M
Sbjct: 638 YVLLANIYAEAEKWEEVKRM 657


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 242/450 (53%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQL---KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           +  GI    +T+AS++     L     ++ G K+H  I  + +  +  + + L+ +YA  
Sbjct: 342 IAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARS 401

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           GL+ EA +VFD +   +     + ++I+ YA  G    A+ ++ +M   GV P++ TF  
Sbjct: 402 GLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFAT 461

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           VL AC  +G +  G  +H   +  G    D F  N+LVDMYAKCGD+  A  VF+ +  K
Sbjct: 462 VLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTK 521

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           DL+++ +++   +  G    A D++  M+ +G  PD   +S++L   AN   L +G ++H
Sbjct: 522 DLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIH 581

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEAL 375
              LR  +E D    N+L  +Y+K G L++A  L+      DV +W S++ AHS+   A 
Sbjct: 582 RQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLAS 641

Query: 376 IYFE---QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +  E   +ME +GV P+ +TF+ +L +C+  G V  G   F  +   YG  P  EH+ CM
Sbjct: 642 VALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCM 701

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V++ GRAG + +A  ++ + M F    + W +LL +C LH +  +G  AA+ L EL+P++
Sbjct: 702 VDVLGRAGKLRDAEELL-DSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPES 760

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDR 522
              F  L +IY  AGR  D++ ++R L  R
Sbjct: 761 TSQFVALSQIYAAAGRNSDIDEIKRELALR 790



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 215/443 (48%), Gaps = 29/443 (6%)

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
            C ++K +  G  +H  + T     N  I S L+ +YA  G ID A   FD   NR    
Sbjct: 160 ACGRIKDLAQGRSIHYRVATGR-GINSSIQSALVTMYAQCGRIDLAMAAFDD--NRELGT 216

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
            PWN+++S  A  G +  AI L+FQME+   +    +    L ACA  G +R G ++H  
Sbjct: 217 APWNAIMSALAGAGHHRRAIELFFQMEQH--QCSDRSCAIALGACAAAGHLRGGIQIHDK 274

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
                 G    VLNAL+ MY +CG + +A  VF  + +++++S+ SM+      G    A
Sbjct: 275 IQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFA 334

Query: 280 FDIFRGMILNGFDPDPVAISSI------LANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
             +F GMI  G +P+    +S+      L   ++L  G ++H  +   G++ D  + NSL
Sbjct: 335 VKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSL 394

Query: 334 IVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           I +Y++ G L +A  +FD + +  K VVS+ ++I A++ +    +AL  F +M   GV P
Sbjct: 395 INMYARSGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAP 454

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           + +TF ++L+AC  +G +  G  +   M+E    S     Y  +V++Y + G +  A + 
Sbjct: 455 NEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFA-AR 513

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKI 502
           + E M+ +   V W  ++ A    GN      AA  L++      + PD      LL+  
Sbjct: 514 VFETMKTK-DLVAWTTIIAANVQSGN----NRAALDLYDRMLQSGIHPDIATLSTLLVAC 568

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
             N G L   E++ R  +   LE
Sbjct: 569 -ANLGDLAMGEKIHRQALRSKLE 590



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 186/395 (47%), Gaps = 18/395 (4%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
           T Q   +A+LL  C   +A++HG ++H  I +  L +N  +   + ++YA     D A  
Sbjct: 47  TSQLLLYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIA 106

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           +FD M +R  F   WN L+  +       D + LY +M  E  +P    F   + AC  +
Sbjct: 107 LFDAMPDRRPFC--WNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRI 164

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD---RIGNKDLISYN 264
             +  G  +H   V  G G +  + +ALV MYA+CG I  A   FD    +G     +  
Sbjct: 165 KDLAQGRSIHYR-VATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIM 223

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           S L G  HH   +E F  F+       D          A A  LR G Q+H  +      
Sbjct: 224 SALAGAGHHRRAIELF--FQMEQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHG 281

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM 381
             + + N+LI +Y + GKLD+A  +F  MP ++VVSW S+I A ++      A+  F+ M
Sbjct: 282 TRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGM 341

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKV---GERLFS-VMVEKYGISPRVEHYACMVNLYG 437
             +G+ P+  T+ S++SA AHLG   +   G ++ S +        P V++   ++N+Y 
Sbjct: 342 IAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQN--SLINMYA 399

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           R+GL+ EA  +    +E  +  VV    + A Y H
Sbjct: 400 RSGLLAEAREVFDSILE-NSKTVVSFTTMIAAYAH 433


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 245/425 (57%), Gaps = 13/425 (3%)

Query: 111 IKLHRLIPTNLLR----KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI 166
           + L RLI   +L+     +  + S L  +Y+  G ++E++ VF+QM ++   +  W S+I
Sbjct: 464 LSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVS--WASMI 521

Query: 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
           +G++E    E A+ L+ +M  E + PDQ T    L AC+ L  +  G++VH  A+R   G
Sbjct: 522 TGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVG 581

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            +  V  ALV+MY+KCG IV AR VFD +  KD  S +S+++GY  +G + +A  +F  +
Sbjct: 582 KEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEI 641

Query: 287 ILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
            +     D   +SS++   ++L    IG Q+H  V + G+  ++ + +SL+ +YSK G +
Sbjct: 642 RMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSI 701

Query: 344 DQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
           D+   +F+ + + D++SW ++I +   H K  EAL  ++ M ++G  PD +TFV +LSAC
Sbjct: 702 DECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSAC 761

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G V+ G    + M ++YGI P   HYACMV+L GR+G + EA   I   M  E   +
Sbjct: 762 SHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFI-NNMPIEPDAL 820

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           +WG LL AC +HG++ +G  AA+++ ELEP     +  L  I  + G  +DV ++  ++ 
Sbjct: 821 LWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLME 880

Query: 521 DRGLE 525
             G++
Sbjct: 881 GTGVK 885



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 211/394 (53%), Gaps = 13/394 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  +   T  S+L  C +   ++  ++LH  I       +  +SS L+ +Y+  G++D +
Sbjct: 344 GEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLS 403

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF +M +    A  W  +IS +A+ G    A+ L+ +M +EG+ PD+F    VL    
Sbjct: 404 ERVFREMESTKNLAM-WAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIID 462

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L L   G  +H   ++ G   D  V ++L  MY+KCG + ++ TVF+++ +KD +S+ S
Sbjct: 463 SLSL---GRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWAS 519

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           M+TG+  H    +A  +FR M+L    PD + +++ L   S L     G +VHG+ LR  
Sbjct: 520 MITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRAR 579

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           V  ++ +  +L+ +YSK G +  A  +FD +PQKD  S +S++  ++++    +AL+ F 
Sbjct: 580 VGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFH 639

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           ++    +  D  T  S++ A A L S+ +G +L +  V K G++  V   + +V +Y + 
Sbjct: 640 EIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHAC-VTKMGLNAEVSVGSSLVTMYSKC 698

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G IDE +  + E++E +   + W A++ +   HG
Sbjct: 699 GSIDECHK-VFEQIE-KPDLISWTAMIVSYAQHG 730



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 197/382 (51%), Gaps = 18/382 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+S+L  C  L+ +E G  +   +      ++  + + ++ LYA    +D+A + F +M
Sbjct: 250 TFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRM 309

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W ++ISG+ +  +   A   + +M + G + + +T   VL AC    +I+ 
Sbjct: 310 PIRNVVS--WTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKE 367

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYNSMLTGYI 271
             ++H    + GF  D  V +AL++MY+K G +  +  VF  +   K+L  +  M++ + 
Sbjct: 368 AVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFA 427

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             G    A ++F+ M+  G  PD    SS+L+    L +G  +H ++L+ G+  D+ + +
Sbjct: 428 QSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGS 487

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-DH--EALIYFEQMERDGVLP 388
           SL  +YSK G L+++  +F+ MP KD VSW S+I   S+ DH  +A+  F +M  + + P
Sbjct: 488 SLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRP 547

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY----ACMVNLYGRAGLI-- 442
           D +T  + L+AC+ L S++ G+      V  Y +  RV         +VN+Y + G I  
Sbjct: 548 DQMTLTAALTACSALHSLEKGKE-----VHGYALRARVGKEVLVGGALVNMYSKCGAIVL 602

Query: 443 -DEAYSMIVEKMEFEASPVVWG 463
               + M+ +K +F  S +V G
Sbjct: 603 ARRVFDMLPQKDQFSCSSLVSG 624



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 195/384 (50%), Gaps = 12/384 (3%)

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            + T +L+ N  +++ L+  Y     +  A ++FD+  +    +  WN LISG  +   +
Sbjct: 71  FLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVIS--WNILISGCNQNFSF 128

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
           ED+   + +M   G +P+QFT+  VL AC  LG    GE V+  A++ GF  +G+V   +
Sbjct: 129 EDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGM 188

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +D++AK      A  VF  +  ++++ +N++++G + +     A D+F  M    F P+ 
Sbjct: 189 IDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNS 248

Query: 296 VAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              SSIL A A+L  L  G  V GWV++ G   D+ +  ++I +Y+K   +DQA   F  
Sbjct: 249 FTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLR 308

Query: 353 MPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MP ++VVSW +II    +  +   A  +F++M + G   ++ T  S+L+AC     +K  
Sbjct: 309 MPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEA 368

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            +L S  + K G        + ++N+Y + G++D +   +  +ME   +  +W  ++ A 
Sbjct: 369 VQLHS-WIFKTGFYLDSNVSSALINMYSKIGVVDLS-ERVFREMESTKNLAMWAVMISAF 426

Query: 470 YLHGNVCMGETAAQKLFE--LEPD 491
              G+        Q++ +  L PD
Sbjct: 427 AQSGSTGRAVELFQRMLQEGLRPD 450



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 205/411 (49%), Gaps = 23/411 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L  C  L +  +G  ++ L   N    N  + + ++ L+A     ++A +VF  +
Sbjct: 149 TYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDV 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++ISG  +  E   A+ L+ QM      P+ FTF  +L ACA L  +  
Sbjct: 209 LCENVVC--WNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEF 266

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  V    ++ G G D FV  A++D+YAKC D+ +A   F R+  ++++S+ ++++G++ 
Sbjct: 267 GRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQ 326

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
               + AF  F+ M   G   +   I+S+L   +   +++   Q+H W+ + G   D  +
Sbjct: 327 KDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNV 386

Query: 330 ANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           +++LI +YSK G +D +  +F  M   K++  W  +I A ++      A+  F++M ++G
Sbjct: 387 SSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEG 446

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD     S+LS    + S+ +G RL    + K G+   +   + +  +Y + G ++E+
Sbjct: 447 LRPDKFCSSSVLSI---IDSLSLG-RLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEES 502

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ-----KLFELEPD 491
           Y+ + E+M  +   V W +++     H +    E A Q      L E+ PD
Sbjct: 503 YT-VFEQMP-DKDNVSWASMITGFSEHDH---AEQAVQLFREMLLEEIRPD 548



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + + T +S++     L +++ G +LH  +    L     + S L+ +Y+  G IDE H+V
Sbjct: 648 IDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKV 707

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F+Q+      +  W ++I  YA+ G+  +A+ +Y  M +EG +PD  TF  VL AC+  G
Sbjct: 708 FEQIEKPDLIS--WTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNG 765

Query: 209 LIRVGEKVHLDAVRFGFGFD-GFVLNA-LVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           ++  G   HL+++   +G + G+   A +VD+  + G + +A    +R  N   I  +++
Sbjct: 766 MVEEGYS-HLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEA----ERFINNMPIEPDAL 820

Query: 267 LTGYI 271
           L G +
Sbjct: 821 LWGIL 825


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 151/422 (35%), Positives = 231/422 (54%), Gaps = 41/422 (9%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRV 200
           +D A ++F+Q+SN   F +  NS+I  Y     Y D I +Y Q+  +  E PD+FTFP +
Sbjct: 58  MDYATRLFNQVSNPNVFLY--NSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFM 115

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
            K+CA LG   +G++VH    +FG  F     NAL+DMY K  D+V A  VFD +  +D+
Sbjct: 116 FKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDV 175

Query: 261 ISYNSMLTGYIHHGLL-------------------------------VEAFDIFRGMILN 289
           IS+NS+L+GY   G +                               VEA D FR M L 
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G +PD +++ S+L   A    L +G  +H +  RRG      + N+LI +YSK G + QA
Sbjct: 236 GIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQA 295

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             LF  M  KDV+SW+++I     H   H A+  F +M+R  V P+ +TF+ LLSAC+H+
Sbjct: 296 IQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHV 355

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G  + G R F +M + Y I P++EHY C++++  RAG ++ A   I + M  +    +WG
Sbjct: 356 GMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVE-ITKTMPMKPDSKIWG 414

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           +LL +C   GN+ +   A   L ELEP++  N+ LL  IY + G+ +DV R+ +M+ +  
Sbjct: 415 SLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNEN 474

Query: 524 LE 525
           ++
Sbjct: 475 MK 476



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 176/386 (45%), Gaps = 76/386 (19%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  + ++C  L +   G ++H  +     R +    + L+ +Y  F  + +AH+VFD+M
Sbjct: 111 TFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEM 170

Query: 153 SNRTAFAFPWNSLISGYAELGE-------------------------------YEDAIAL 181
             R   +  WNSL+SGYA LG+                               Y +A+  
Sbjct: 171 YERDVIS--WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDF 228

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           + +M+  G+EPD+ +   VL +CA LG + +G+ +HL A R GF     V NAL++MY+K
Sbjct: 229 FREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSK 288

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG I +A  +F ++  KD+IS+++M++GY +HG    A + F  M      P+ +    +
Sbjct: 289 CGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGL 348

Query: 302 LANASLLRIGAQVHGW----VLRRGVEWDLCIAN--SLIVVYSKDGKLDQACWLFDHMPQ 355
           L+  S   +G    G     ++R+  + +  I +   LI V ++ GKL++A  +   MP 
Sbjct: 349 LSACS--HVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 406

Query: 356 KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           K                               PD   + SLLS+C   G++ V       
Sbjct: 407 K-------------------------------PDSKIWGSLLSSCRTPGNLDVALVAMDH 435

Query: 416 MVEKYGISPR-VEHYACMVNLYGRAG 440
           +VE   + P  + +Y  + N+Y   G
Sbjct: 436 LVE---LEPEDMGNYVLLANIYADLG 458



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 141/300 (47%), Gaps = 43/300 (14%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +K++   +  G     F++  +VD   K  D+  A  +F+++ N ++  YNS++  Y H+
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 274 GLLVEAFDIFRGMILNGFD-PDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
            L  +   I++ ++   F+ PD      +  + + L    +G QVHG + + G  + +  
Sbjct: 87  SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---------------DH-- 372
            N+LI +Y K   L  A  +FD M ++DV+SWNS++  +++               D   
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206

Query: 373 -----------------EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
                            EA+ +F +M+  G+ PD ++ +S+L +CA LGS+++G +   +
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG-KWIHL 265

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGN 474
             E+ G   +      ++ +Y + G+I +A  +     + E   V+ W  ++     HGN
Sbjct: 266 YAERRGFLKQTGVCNALIEMYSKCGVISQAIQLF---GQMEGKDVISWSTMISGYAYHGN 322



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     +  S+L +C QL ++E G  +H         K  G+ + L+ +Y+  G+I +A
Sbjct: 236 GIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQA 295

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q+F QM  +   +  W+++ISGYA  G    AI  + +M+   V+P+  TF  +L AC+
Sbjct: 296 IQLFGQMEGKDVIS--WSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACS 353

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
            +G+ + G + + D +R  +  +  +     L+D+ A+ G + +A
Sbjct: 354 HVGMWQEGLR-YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERA 397


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 244/447 (54%), Gaps = 16/447 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ++ L+ C   + +  G+ +H L       ++  ++S L+ LY+  G I +A +VFD  
Sbjct: 321 TLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCA 380

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM------EEEGVEPDQFTFPRVLKACAG 206
                 A  WN++ISGYA  G   DA+ ++ +M       E+  +PD+FTF  +LKAC G
Sbjct: 381 GLGRGLA-TWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGG 439

Query: 207 LGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           LG  R G +VH  + A  F    +  +  ALVDMY KCG +  A  VF+R+  K+ I + 
Sbjct: 440 LGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWT 499

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRR 321
           +++ G+   G ++EA ++FR    +G   D   +SSI   LA+ +L+  G QVH + ++ 
Sbjct: 500 TVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKS 559

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
               D+   NS++ +Y K G  D+A  +F  +P ++VVSW ++I+    H    EA+  F
Sbjct: 560 PAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMF 619

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M   GV PD +T+++LLSAC+H G V    R FS +     + P+ EHYACMV+L GR
Sbjct: 620 EEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGR 679

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + EA  +I   M  E +  VW  LL AC +H +V +G  A   L  ++ DN  N+  
Sbjct: 680 AGELREARDLI-RTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVT 738

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  ++  AG   +  +V   +  RGL+
Sbjct: 739 LSNVFAEAGAWRECHKVRDAMRRRGLK 765



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 207/451 (45%), Gaps = 40/451 (8%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           + +  A LL    +  ++  G++LH  +       +  + + L+ +YA  G +D A +VF
Sbjct: 216 RRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVF 275

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLG 208
             M +R   +  W +L+ G+ + G+    + L  +M       P+++T    LKAC    
Sbjct: 276 GGMRDRNVVS--WTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTE 333

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSML 267
            +  G  +H   VR G+     V ++LV +Y+K G I  AR VFD  G  + L ++N+M+
Sbjct: 334 DMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMI 393

Query: 268 TGYIHHGLLVEAFDIFRGMIL------NGFDPDPVAISSILANASLL---RIGAQVHGWV 318
           +GY H G   +A  +FR M        +   PD    +S+L     L   R GAQVH  +
Sbjct: 394 SGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAM 453

Query: 319 LRRG--VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---E 373
              G     +  +A +L+ +Y K G+L  A  +F+ + +K+ + W +++  H+++    E
Sbjct: 454 AASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVME 513

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI-SPR---VEHY 429
           AL  F +  R G   D     S++   A    V+ G +     V  YG+ SP    V   
Sbjct: 514 ALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQ-----VHCYGVKSPAGTDVSAG 568

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVCMGETAAQKLFEL 488
             +V++Y + GL DEA  M     E  A  VV W  ++     HG   +G  A     E+
Sbjct: 569 NSIVDMYLKCGLPDEAERMF---REIPARNVVSWTTMINGLGKHG---LGREAVAMFEEM 622

Query: 489 -----EPDNEHNFELLIKIYGNAGRLDDVER 514
                EPD E  +  L+    +AG +D+  R
Sbjct: 623 RAGGVEPD-EVTYLALLSACSHAGLVDECRR 652


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 247/436 (56%), Gaps = 10/436 (2%)

Query: 96  SLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           ++L T Y QL   E  +++  L+  +    N+   S +L        +  A  +FD++S 
Sbjct: 321 NILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISK 380

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            +     WN+L+SGY +   ++D I L+ +M+ + V+PD+ T   +L  C+ LG++ +G+
Sbjct: 381 PSVTT--WNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGK 438

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH  +V+     D FV + L+DMY+KCG +  A+ +F+ +  +D++ +NSM++G   H 
Sbjct: 439 QVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHS 498

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L  EAFD F+ M  NG  P   + +S++   A  S +  G Q+H  VL+ G + ++ + +
Sbjct: 499 LNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGS 558

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           SLI +Y+K G +D A   F+ M  K++V+WN +IH ++++    +A+  FE M      P
Sbjct: 559 SLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKP 618

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TF+++L+ C+H G V      F+ M   YGI P VEHY C+++  GRAG   E  + 
Sbjct: 619 DSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVA- 677

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           +++KM ++   ++W  LL AC +H N  +GE AA+ LF L+P N   + LL  IY   GR
Sbjct: 678 VIDKMPYKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGR 737

Query: 509 LDDVERVERMLVDRGL 524
             D   V  ++  RG+
Sbjct: 738 HGDASAVRALMSSRGV 753



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 207/456 (45%), Gaps = 32/456 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVE-HGIKLHRLIP-TNLLRKNKGISSKLLRLYATFGLID 143
           G+   T     L+E  Y L  +  H ++  R +P  N+   N  IS+         G + 
Sbjct: 40  GLAADTFLLNRLVEL-YSLSGLPCHALRAFRALPRPNVYSYNAAISAA-----CRAGDLA 93

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  +  +M +R A +  WN++I+  A      +A+ +Y  M +EG+ P  FT   VL A
Sbjct: 94  AARDLLGRMPDRNAVS--WNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSA 151

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  +  +  G + H  AV+ G   + FV N L+ MY KCG +  A  +FD + + + +S+
Sbjct: 152 CGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSF 211

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-----------ASLLRIGA 312
            +M+ G    G + +A  +F  M  +    DPVA+SS+L             A  +R+  
Sbjct: 212 TAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQ 271

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            +H  V+R+G + D  + NSLI +Y+K  K+D+A  +F+ M    +VSWN ++  + +  
Sbjct: 272 SIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLG 331

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
               AL   + M+  G  P+ +T+ ++L++C     V     +F  + +     P V  +
Sbjct: 332 CYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISK-----PSVTTW 386

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFE 487
             +++ YG+  L  +   +          P       +L  C   G + +G+       +
Sbjct: 387 NTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVK 446

Query: 488 LEPDNEHNFEL-LIKIYGNAGRLDDVERVERMLVDR 522
           L   N+      LI +Y   G++   + +  M+ +R
Sbjct: 447 LLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTER 482



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 16/254 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     ++AS++ +C +L ++  G ++H  +  +   +N  + S L+ +YA  G +D
Sbjct: 512 ENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMD 571

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F+ M  +   A  WN +I GYA+ G  E A+ L+  M     +PD  TF  VL  
Sbjct: 572 DARLFFNCMIVKNIVA--WNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTG 629

Query: 204 CAGLGLIRVGEKV-HLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-D 259
           C+  GL  V E + + +++   +G    V     L+D   + G   +   V D++  K D
Sbjct: 630 CSHSGL--VDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDD 687

Query: 260 LISYNSMLTG-YIHHGLLVEAFDIFRGMILNGFDPDP-VAISSILA------NASLLRIG 311
            I +  +L    +HH   +  F       L+  +P P V +S+I A      +AS +R  
Sbjct: 688 AILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRAL 747

Query: 312 AQVHGWVLRRGVEW 325
               G V  RG  W
Sbjct: 748 MSSRGVVKGRGYSW 761



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 100/274 (36%), Gaps = 77/274 (28%)

Query: 318 VLRRGVEWDLCIANSLIVVYS-------------------------------KDGKLDQA 346
           VL  G+  D  + N L+ +YS                               + G L  A
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             L   MP ++ VSWN++I A ++     EAL  +  M ++G+ P + T  S+LSAC  +
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 404 GSVKVGERLFSVMVEKYGI-------------------------------SPRVEHYACM 432
            ++  G R   + V K G+                               SP    +  M
Sbjct: 156 AALDDGRRCHGLAV-KVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214

Query: 433 VNLYGRAGLIDEAYSMI--VEKMEFEASPV----VWGALLYACYLHGNVCMGETAAQKLF 486
           +    ++G +D+A  +   + +      PV    V GA   AC    NV      AQ + 
Sbjct: 215 MGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIH 274

Query: 487 ELE-----PDNEHNFELLIKIYGNAGRLDDVERV 515
            L        ++H    LI +Y    ++D+  +V
Sbjct: 275 ALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKV 308


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 249/448 (55%), Gaps = 10/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           VQNG         SLL     L  + +G ++H       L  +  I++ L+ +Y     +
Sbjct: 357 VQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSV 416

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + + +VFD+M  R      W ++I+ YA+   Y +AI  +   ++EG++ D      +L+
Sbjct: 417 ECSARVFDRM--RIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILE 474

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC+GL  I + ++VH  A+R G   D  + N ++D+Y +CG++  A  +F+ +  KD+++
Sbjct: 475 ACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVT 533

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + SM+  +  +GLL EA  +F  M+  G  PD VA+  IL   A  S L  G ++HG+++
Sbjct: 534 WTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLI 593

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R     +  + +SL+ +YS  G ++ A  +FD    KDVV W ++I+A   H    +A+ 
Sbjct: 594 RGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIY 653

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M   GV PDH++F++LL AC+H   V  G+    +MV KY + P  EHYAC+V+L 
Sbjct: 654 IFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLL 713

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+G  +EAY  I + M  E   VVW ALL AC +H N  +   A  KL ELEPDN  N+
Sbjct: 714 GRSGQTEEAYKFI-KSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNY 772

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            L+  ++   G+ ++V+ +   + ++GL
Sbjct: 773 VLVSNVFAEMGKWNNVKEIRTKMTEQGL 800



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 189/343 (55%), Gaps = 17/343 (4%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQ 147
           T+ +  +L+     +AV  G +LH   + T  L  +    +++KLL +Y   G + +AH+
Sbjct: 55  TDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHR 114

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE----GVEPDQFTFPRVLKA 203
           +FD M  RT F+  WN+LI      G   +A+ +Y  M       G  PD  T   VLKA
Sbjct: 115 LFDGMPARTVFS--WNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLIS 262
           C   G  R G +VH  AV+ G      V NALV MYAKCG +  A  VF+ + + +D+ S
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVL 319
           +NS ++G + +G+ +EA D+FR M  +GF  +    V +  + A  + L  G ++H  +L
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALI 376
           + G E+++   N+L+V+Y++ G +D A  +F  +  KD +SWNS++  + ++    EA+ 
Sbjct: 293 KCGTEFNI-QCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAID 351

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +F +M ++G  PDH   VSLLSA  HLG +  G  + +  V++
Sbjct: 352 FFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ 394



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 215/413 (52%), Gaps = 19/413 (4%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           L+ALD + + ++S   +G ++ + T   +L+ C +L  + HG +LH  +       N   
Sbjct: 247 LEALD-LFRRMQS---DGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC 302

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ LL +YA  G +D A +VF ++ ++   +  WNS++S Y +   Y +AI  + +M + 
Sbjct: 303 NA-LLVMYARCGWVDSALRVFREIGDKDYIS--WNSMLSCYVQNRLYAEAIDFFGEMVQN 359

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G  PD      +L A   LG +  G +VH  AV+     D  + N L+DMY KC  +  +
Sbjct: 360 GFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECS 419

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
             VFDR+  KD +S+ +++  Y       EA   FR     G   DP+ + SIL   S L
Sbjct: 420 ARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGL 479

Query: 309 R---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           +   +  QVH + +R G+  DL + N +I +Y + G++  A  +F+ + +KD+V+W S++
Sbjct: 480 KSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMV 538

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYG 421
           +  +++   HEA+  F +M   G+ PD +  V +L A A L S+  G+ +   ++  K+ 
Sbjct: 539 NCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFP 598

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +   V   + +V++Y   G ++ A  +  E    +   V+W A++ A  +HG+
Sbjct: 599 VEGAV--VSSLVDMYSGCGSMNYALKVFDEAKCKDV--VLWTAMINATGMHGH 647



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 27/322 (8%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN----LLRKNKGISSK 131
           I    ++ + GI V      S+LE C  LK++    ++H     N    L+ KN+     
Sbjct: 451 IGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNR----- 505

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           ++ +Y   G +  A  +F+ +  +      W S+++ +AE G   +A+AL+ +M   G++
Sbjct: 506 IIDIYGECGEVCYALNIFEMLDKKDIVT--WTSMVNCFAENGLLHEAVALFGKMLNAGIQ 563

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD      +L A AGL  +  G+++H   +R  F  +G V+++LVDMY+ CG +  A  V
Sbjct: 564 PDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKV 623

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           FD    KD++ + +M+     HG   +A  IF+ M+  G  PD V+  ++L   +++ L+
Sbjct: 624 FDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLV 683

Query: 309 RIGA-----QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWN 362
             G       V  + L+   E   C+ + L     + G+ ++A      MP +   V W 
Sbjct: 684 DEGKFYLDMMVSKYKLQPWQEHYACVVDLL----GRSGQTEEAYKFIKSMPLEPKSVVWC 739

Query: 363 SIIHAHS--KDHE-ALIYFEQM 381
           +++ A    K+HE A+I  +++
Sbjct: 740 ALLGACRIHKNHELAMIATDKL 761


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 254/447 (56%), Gaps = 19/447 (4%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           + F  +L+ C  +  ++   K+H  I    L ++  + +K++ +   +G  + A+ +F  
Sbjct: 60  DMFVPILKDCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKG 116

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-----EEEGVEPDQFTFPRVLKACAG 206
           +++  AF +  N++I  Y     Y  AI +Y QM      E  + PD+FTFP V+K+CAG
Sbjct: 117 VADPNAFLY--NAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAG 174

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD--LISYN 264
           L    +G++VH    +FG   +  V N+LV+MY KC  +  A  VF+ +  +D  + S+ 
Sbjct: 175 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWT 234

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++++GY   G   +A + FR M + G +PD +++ S+L   A    L +G  +H +  + 
Sbjct: 235 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA 294

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G   ++C+ N+LI +Y+K G +DQ   LFD M ++DV+SW+++I     H +  EA+  F
Sbjct: 295 GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELF 354

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M++  + P  +TFV LL+ACAH G +  G R F  M   Y I P VEHY C+VNL G 
Sbjct: 355 QEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL 414

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           +G +D+A  + V+KM  +    +WG+LL +C  HGN+ +   A + L ELEP +  N+ L
Sbjct: 415 SGRLDQALEL-VKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVL 473

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +Y + G+ D V R+ +++  + ++
Sbjct: 474 LSNLYADLGKWDGVSRMRKLMRSKSMK 500



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 16/310 (5%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +N I     TF  ++++C  L   + G ++H  +     + N  + + L+ +Y     +D
Sbjct: 155 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 214

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +AH+VF++M+ R A  F W +++SGYA +G Y DA+  + +M+  G+EPD+ +   VL  
Sbjct: 215 DAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPD 274

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA LG + +G+ +H+ A + GF  +  V NAL++MYAKCG I + R +FD++  +D+IS+
Sbjct: 275 CAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISW 334

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG-----AQVH 315
           ++M+ G  +HG   EA ++F+ M     +P  +    +L   A+A LL  G     +   
Sbjct: 335 STMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKR 394

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSII---HAHSKD 371
            + +  GVE   C+ N L       G+LDQA  L   MP+K D   W S++    +H   
Sbjct: 395 DYNIEPGVEHYGCLVNLL----GLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNL 450

Query: 372 HEALIYFEQM 381
             A+I  E +
Sbjct: 451 KIAVIAMEHL 460


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/473 (32%), Positives = 262/473 (55%), Gaps = 44/473 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+ C +      G+++HR I  + +  +  + + L+ +Y  FG ++ A  +FD M
Sbjct: 184 TYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNM 243

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV------------ 200
             R + +  WN++IS YA  G +++A  L+  M+EEGVE +   +  +            
Sbjct: 244 PRRDSVS--WNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRG 301

Query: 201 ----------------------LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
                                 L AC+ +G I++G+++H  AVR  F     V NAL+ M
Sbjct: 302 ALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITM 361

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           Y++C D+  A  +F R   K LI++N+ML+GY H     E   +FR M+  G +P+ V I
Sbjct: 362 YSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTI 421

Query: 299 SSIL---ANASLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           +S+L   A  + L+ G + H ++++ +  E  L + N+L+ +YS+ G++ +A  +FD + 
Sbjct: 422 ASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLT 481

Query: 355 QKDVVSWNSIIHAHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           ++D V++ S+I  +    E    L  FE+M +  + PDH+T V++L+AC+H G V  G+ 
Sbjct: 482 KRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQV 541

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           LF  M++ +GI PR+EHYACM +L+GRAGL+++A   I   M ++ +  +W  LL AC +
Sbjct: 542 LFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFIT-GMPYKPTSAMWATLLGACRI 600

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           HGN  MGE AA KL E++PD+   + L+  +Y  AG    +  V   + + G+
Sbjct: 601 HGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGV 653



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 224/495 (45%), Gaps = 79/495 (15%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
            SLL  C   K++  G +LH  + +  L +N  + S+L+  Y    L+ +A  V +  S+
Sbjct: 85  GSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTE--SS 142

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            T     WN LIS Y   G + +A+ +Y  M  + +EPD++T+P VLKAC        G 
Sbjct: 143 NTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGL 202

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH         +  FV NALV MY + G +  AR +FD +  +D +S+N++++ Y   G
Sbjct: 203 EVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRG 262

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSI--------------------------------- 301
           +  EAF +F  M   G + + +  ++I                                 
Sbjct: 263 IWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVV 322

Query: 302 ----LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
                ++   +++G ++HG  +R   +    + N+LI +YS+   L  A  LF    +K 
Sbjct: 323 GLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKG 382

Query: 358 VVSWNSII--HAHSKDHEALIY-FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER--- 411
           +++WN+++  +AH   +E + + F +M ++G+ P+++T  S+L  CA + +++ G+    
Sbjct: 383 LITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHC 442

Query: 412 -------------LFSVMVEKYGISPRVEH---------------YACMVNLYGRAGLID 443
                        L++ +V+ Y  S RV                 Y  M+  YG  G  +
Sbjct: 443 YIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGE 502

Query: 444 EAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELE---PDNEHNFEL 498
               +  E  + E  P  V   A+L AC   G V  G+   +++ ++    P  EH +  
Sbjct: 503 TTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEH-YAC 561

Query: 499 LIKIYGNAGRLDDVE 513
           +  ++G AG L+  +
Sbjct: 562 MADLFGRAGLLNKAK 576



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 124/252 (49%), Gaps = 8/252 (3%)

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           G   +A   +FQ++           P   +L AC     +  G+++H   +  G   +  
Sbjct: 58  GHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPI 117

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           +++ LV+ Y     +V A+ V +     D + +N +++ Y+ +G  VEA  +++ M+   
Sbjct: 118 LVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKK 177

Query: 291 FDPDPVAISSIL--ANASL-LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            +PD     S+L     SL    G +VH  +    +EW L + N+L+ +Y + GKL+ A 
Sbjct: 178 IEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIAR 237

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            LFD+MP++D VSWN+II  ++      EA   F  M+ +GV  + + + ++   C H G
Sbjct: 238 HLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSG 297

Query: 405 SVKVGERLFSVM 416
           + +   +L S M
Sbjct: 298 NFRGALQLISQM 309



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGL 141
           +Q G+     T AS+L  C ++  ++HG + H  ++      +   + + L+ +Y+  G 
Sbjct: 410 LQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGR 469

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           + EA +VFD ++ R    +   S+I GY   GE E  + L+ +M +  ++PD  T   VL
Sbjct: 470 VLEARKVFDSLTKRDEVTY--TSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVL 527

Query: 202 KACAGLGLIRVGE 214
            AC+  GL+  G+
Sbjct: 528 TACSHSGLVAQGQ 540


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/412 (34%), Positives = 238/412 (57%), Gaps = 22/412 (5%)

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + ++A+ G ++ A +VFD+   R   +  WN LI+GY ++GE E AI +Y  ME EGV+P
Sbjct: 123 IHMFASCGEMENARKVFDESPVRDLVS--WNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   ++ +CA LG +  G++ +      G      + NAL+DM++KCGDI +AR +F
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF 240

Query: 253 DRIGN-------------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           D +               KD++ +N+M+ G +      +A  +F+ M  +  DPD + + 
Sbjct: 241 DNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMI 300

Query: 300 SILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
             L+  S    L +G  +H ++ +  +  ++ +  SL+ +Y+K G + +A  +F  +  +
Sbjct: 301 HCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTR 360

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           + +++ +II     H     A+ YF +M   G+ PD +TF+ LLSAC H G ++ G   F
Sbjct: 361 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 420

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           S M  ++ ++P+++HY+ MV+L GRAGL++EA   ++E M  EA   VWGALL+ C +HG
Sbjct: 421 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEA-DKLMESMPMEADAAVWGALLFGCRMHG 479

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           NV +GE AA+KL EL+P +   + LL  +YG A   +D +R  RM+ +RG+E
Sbjct: 480 NVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVE 531



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 198/415 (47%), Gaps = 60/415 (14%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFTFPRVLKACAGLGLIRVGEK 215
           AF WN  I G++E    +DA+  Y QM   G     PD FT+P + K CA L L  +G  
Sbjct: 43  AFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHM 102

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +     +        V NA + M+A CG++  AR VFD    +DL+S+N ++ GY   G 
Sbjct: 103 ILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGE 162

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANS 332
             +A ++++ M   G  PD V +  ++++ ++   L  G + + +V   G+   + +AN+
Sbjct: 163 GEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANA 222

Query: 333 LIVVYSKDGKLDQA-------------CWLFDHMPQKDVVSWNSIIHAH---SKDHEALI 376
           L+ ++SK G + +A               LFD M +KDVV WN++I       +  +AL 
Sbjct: 223 LMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALA 282

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M+     PD +T +  LSAC+ LG++ VG  +    +EK+ +S  V     +V++Y
Sbjct: 283 LFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRY-IEKHSLSLNVALGTSLVDMY 341

Query: 437 GRAGLIDEA--------------YSMIV-----------------EKMEFEASP--VVWG 463
            + G I EA              Y+ I+                 E ++   +P  + + 
Sbjct: 342 AKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFI 401

Query: 464 ALLYACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            LL AC   G +  G    +  +  F L P  +H + +++ + G AG L++ +++
Sbjct: 402 GLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH-YSIMVDLLGRAGLLEEADKL 455



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 32/304 (10%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T   L+ +C  L  +  G + +  +  N LR    +++ L+ +++  G I EA
Sbjct: 177 GVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEA 236

Query: 146 HQVFDQMSNRTAFA-----------FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
            ++FD +  RT  +             WN++I G  +    +DA+AL+ +M+    +PD+
Sbjct: 237 RRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDE 296

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T    L AC+ LG + VG  +H    +     +  +  +LVDMYAKCG+I +A  VF  
Sbjct: 297 ITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHG 356

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           I  ++ ++Y +++ G   HG    A   F  MI  G  PD +    +L+        A  
Sbjct: 357 IQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLS--------ACC 408

Query: 315 HGWVLRRGVEW------------DLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSW 361
           HG +++ G ++             L   + ++ +  + G L++A  L + MP + D   W
Sbjct: 409 HGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVW 468

Query: 362 NSII 365
            +++
Sbjct: 469 GALL 472


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 230/411 (55%), Gaps = 17/411 (4%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + LL LYA  GL+  A +VFD+M + +    PW +LI+ Y + G+  +A+ +   
Sbjct: 584 NPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTV--PWTALITAYMDAGDLREAVHVARN 641

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
               G+ PD FT  RVL ACA +  +  GE V   A + G     FV  A VD+Y KCG+
Sbjct: 642 AFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGE 701

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + KAR VFD++ +KD +++ +M+ GY  +G   EA D+F  M   G  PD  A++  L+ 
Sbjct: 702 MAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSA 761

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----SLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            +  R+GA   G    R V+WD  + N     +LI +Y+K G   +A  +F  M +KD++
Sbjct: 762 CT--RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 819

Query: 360 SWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
            WN++I       H K   AL+   QME+ GV  +  TF+ LL +C H G ++ G R F 
Sbjct: 820 VWNAMILGLGMTGHEKIAFALV--GQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 877

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + Y ISPR+EHY CMV+L  RAGL+ EA+ + V+ M   A+ V+ GALL  C +H N
Sbjct: 878 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQL-VDDMPMPANAVILGALLGGCKIHRN 936

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + E   ++L  LEP N  N+ +L  IY N GR +D  ++   +  +G+E
Sbjct: 937 TELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 987



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 10/290 (3%)

Query: 192 PDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           P   T P  LK+ + L   +R GE++H  +++     +  VL +L+ +YAKCG + +A+ 
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASL 307
           VFD + +   + + +++T Y+  G L EA  + R    NG  PD    V + +  A  + 
Sbjct: 607 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 666

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L  G  V     + GV   + +A + + +Y K G++ +A  +FD M  KD V+W +++  
Sbjct: 667 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGG 726

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           ++ +    EAL  F  M+ +G+ PD       LSAC  LG++ +G +   ++     +  
Sbjct: 727 YASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 786

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            V   A ++++Y + G   EA+ ++ ++M  +   +VW A++    + G+
Sbjct: 787 PVLGTA-LIDMYAKCGSTVEAW-VVFQQMR-KKDIIVWNAMILGLGMTGH 833



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 14/229 (6%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           F   P  S  P      A+       L   +    ++  NG+   + T   +L  C ++ 
Sbjct: 608 FDEMPHPSTVPWTALITAY--MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
            +  G  + R      + ++  +++  + LY   G + +A +VFD+M ++ A A  W ++
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA--WGAM 723

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           + GYA  G   +A+ L+  M+ EG++PD +     L AC  LG + +G +    A+R   
Sbjct: 724 VGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ----AIRM-V 778

Query: 226 GFDGFVLN-----ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
            +D F+ N     AL+DMYAKCG  V+A  VF ++  KD+I +N+M+ G
Sbjct: 779 DWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILG 827



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+       A  L  C +L A++ G +  R++  +    N  + + L+ +YA  G   EA
Sbjct: 747 GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEA 806

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF QM  +      WN++I G    G  + A AL  QME+ GV+ +  TF  +L +C 
Sbjct: 807 WVVFQQMRKKDIIV--WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCT 864

Query: 206 GLGLIRVGEK 215
             GLI+ G +
Sbjct: 865 HTGLIQDGRR 874


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 271/494 (54%), Gaps = 25/494 (5%)

Query: 38  ISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
           I+ +R  T +S+P SS     T    F   KL           SS+     VQ+  FA  
Sbjct: 101 IAPSRFGTLTSFPNSSNDSTRTKVAVF-LGKLH---------NSSLLADSIVQSLVFA-- 148

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           + +C    +V +   +H  +  +L   +  I  +L+ +Y   G  ++A ++FD+M NR  
Sbjct: 149 ISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDL 205

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
            +  WNSL+SG +  G     +  + +M  E G +P++ T   V+ ACA +G +  G+ +
Sbjct: 206 VS--WNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSL 263

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H   V+ G      V+N+L++MY K G +  A  +F+ +  + L+S+NSM+  + H+G  
Sbjct: 264 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 323

Query: 277 VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
            +  D+F  M   G +PD   + ++L    +  L R    +H ++ R G   D+ IA +L
Sbjct: 324 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 383

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           + +Y+K G+L+ +  +F+ +  +D ++W +++     H+   EA+  F+ M ++GV  DH
Sbjct: 384 LNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 443

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TF  LLSAC+H G V+ G++ F +M E Y + PR++HY+CMV+L GR+G +++AY +I 
Sbjct: 444 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELI- 502

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + M  E S  VWGALL AC ++GNV +G+  A++L  L+P +  N+ +L  IY  AG   
Sbjct: 503 KSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWR 562

Query: 511 DVERVERMLVDRGL 524
              +V  ++ +R L
Sbjct: 563 XASKVRXLMKERRL 576


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 248/439 (56%), Gaps = 11/439 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++ LL+ C +L  VE G  +H  L+ ++ L  +  + + ++ +YA  G +D+A ++FD+M
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      W +LI+G+++     DA+ L+ QM   G +P+ FT   +LKA      +  
Sbjct: 150 PTKDMVT--WTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP 207

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   +++G+    +V +ALVDMYA+CG +  A+  FD +  K  +S+N++++G+  
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G    A  +   M    F P     SS+L   A+   L  G  VH  +++ G++    I
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFI 327

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N+L+ +Y+K G +D A  +FD + + DVVSWN+++     H    E L  FEQM R G+
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI 387

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ ++F+ +L+AC+H G +  G   F +M +KY + P V HY   V+L GR GL+D A 
Sbjct: 388 EPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E M  E +  VWGALL AC +H N+ +G  AA++ FEL+P +     LL  IY +A
Sbjct: 447 RFIRE-MPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASA 505

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR  DV +V +M+ + G++
Sbjct: 506 GRWRDVAKVRKMMKESGVK 524



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 146/279 (52%), Gaps = 6/279 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SLL+       ++ G +LH        + +  + S L+ +YA  G +D A   FD M
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             ++  +  WN+LISG+A  GE E A+ L ++M+ +  +P  FT+  VL ACA +G +  
Sbjct: 251 PTKSEVS--WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQ 308

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH   ++ G     F+ N L+DMYAK G I  A+ VFDR+   D++S+N+MLTG   
Sbjct: 309 GKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQ 368

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HGL  E  D F  M+  G +P+ ++   +L   +++ LL  G      + +  VE D+  
Sbjct: 369 HGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPH 428

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             + + +  + G LD+A      MP +     W +++ A
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGA 467


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 245/460 (53%), Gaps = 49/460 (10%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           K H L+    L ++  + +K++ +      +D A  +F ++ +  A+ +  N++I     
Sbjct: 6   KNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLY--NAMIRACTH 63

Query: 172 LGEYEDAIALYFQM---------EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
              Y   I  Y QM          E+ + PD+FTFP V+KACA LGL  +G++VH    +
Sbjct: 64  NSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFK 123

Query: 223 FGFGFDGFVLNALVDMYAKC-------------------------------GDIVKARTV 251
           FG        NAL+DMY KC                               G + +AR +
Sbjct: 124 FGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARAL 183

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           FD + N+ ++S+ ++++GY   G  ++A D+FR M + G +PD  +I S+L   A    L
Sbjct: 184 FDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGAL 243

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
             G  +H +  R G+    CI N+LI +Y+K G +DQAC LFD M  +DV+SW+++I   
Sbjct: 244 ETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGL 303

Query: 368 --HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
             H K  EA+  FE+M++  + P+ +TFV LLSACAH G  + G   F  M + + I P 
Sbjct: 304 ANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPE 363

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +EHY  +V+L GRAG + +A   IVEKM  +    +WG+LL +C  H N+ +   A + L
Sbjct: 364 IEHYGSLVDLLGRAGRLSQALD-IVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHL 422

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ELEPD+  N+ LL  IY + G+ DDV R+ +++  + ++
Sbjct: 423 EELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMK 462



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 161/388 (41%), Gaps = 85/388 (21%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +K H   +++      F++  ++D+  +  D+  A  +F  + + +   YN+M+    H+
Sbjct: 5   KKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHN 64

Query: 274 GLLVEAFDIFRGMILNGFD---------PDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
            +     D ++ M+    +         PD      ++   A   L  +G QVH    + 
Sbjct: 65  SMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKF 124

Query: 322 GVEWDLCIANSLIVVYSKD-------------------------------GKLDQACWLF 350
           G +  L   N+LI +Y+K                                G++ +A  LF
Sbjct: 125 GKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALF 184

Query: 351 DHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           D MP + +VSW +II  +++     +AL  F +M+  G+ PD  + +S+L ACA LG+++
Sbjct: 185 DEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALE 244

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM------------------- 448
            G +   +   + G+  R      ++ +Y + G ID+A  +                   
Sbjct: 245 TG-KWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGL 303

Query: 449 -----------IVEKME---FEASPVVWGALLYACYLHG---NVCMGETAAQKLFELEPD 491
                      I E+M+    + + + +  LL AC   G      M     +K F +EP+
Sbjct: 304 ANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPE 363

Query: 492 NEHNFELLIKIYGNAGRLDD-VERVERM 518
            EH +  L+ + G AGRL   ++ VE+M
Sbjct: 364 IEH-YGSLVDLLGRAGRLSQALDIVEKM 390



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 6/191 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     +  S+L  C +L A+E G  +H     N L +   I + L+ +Y   G ID+A
Sbjct: 222 GIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQA 281

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q+FDQM  R   +  W+++I G A  G+  +AIA++ +M++  ++P+  TF  +L ACA
Sbjct: 282 CQLFDQMRGRDVIS--WSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACA 339

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DLIS 262
             G    G  ++ D ++  F  +  +    +LVD+  + G + +A  + +++  K D   
Sbjct: 340 HAGFWEEG-LMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKI 398

Query: 263 YNSMLTGYIHH 273
           + S+L+    H
Sbjct: 399 WGSLLSSCRTH 409


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 253/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T + ++  C  ++ +  G +LH     + L  ++ +   L+ +YA     G +  A ++F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEY-EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           DQ+ +   F+  W ++I+GY + G Y E+A+ L+  M    V P+ FTF   LKACA L 
Sbjct: 333 DQILDHNVFS--WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLA 390

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R+GE+V   AV+ GF     V N+L+ MYA+ G I  AR  FD +  K+LISYN+++ 
Sbjct: 391 ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEW 325
            Y  +    EA ++F  +   G        +S+L+ A+ +     G Q+H  V++ G++ 
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           +  + N+LI +YS+ G ++ A  +F+ M  ++V+SW SII   +K     +AL  F +M 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +GV P+ +T++++LSAC+H+G V  G + F  M  ++G+ PR+EHYAC+V++ GR+G +
Sbjct: 571 EEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSL 630

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I   M ++A  +VW   L AC +HGN+ +G+ AA+ + E EP +   + LL  +
Sbjct: 631 SEAIQFI-NSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNL 689

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y +  + D+V  + + + ++ L
Sbjct: 690 YASISKWDEVSNIRKAMKEKXL 711



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 219/403 (54%), Gaps = 17/403 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYAT-FG 140
           ++NG       FA+    C   + V  G  +   +I T  L+ +  +   L+ ++    G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +  A +VF++M  R A    W  +I+   + G   +AI L+  M   G EPD+FT   V
Sbjct: 220 DLVSAFKVFEKMPERNAVT--WTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGV 277

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGN 257
           + ACA + L+ +G+++H  A+R G   D  V   L++MYAKC   G +  AR +FD+I +
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 258 KDLISYNSMLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ 313
            ++ S+ +M+TGY+  G    EA D+FRGMIL    P+    SS L   AN + LRIG Q
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           V    ++ G     C+ANSLI +Y++ G++D A   FD + +K+++S+N++I A++K+  
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 372 -HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EAL  F ++E  G+     TF SLLS  A +G++  GE++ + ++ K G+        
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVI-KSGLKLNQSVCN 516

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            ++++Y R G I+ A+  + E ME + + + W +++     HG
Sbjct: 517 ALISMYSRCGNIESAFQ-VFEDME-DRNVISWTSIITGFAKHG 557



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 213/417 (51%), Gaps = 22/417 (5%)

Query: 56  PLLTNQKAFPKTKLQALDS-----IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHG 110
           P  TN        +Q +++      I  LE  V  G     +T++  L+ C + ++ + G
Sbjct: 26  PTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIG 85

Query: 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
             +H  +  + L+ +    + L+ LY+  G  ++A  +F  M +       W++++S +A
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDL-ISWSAMVSCFA 144

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDG 229
                  A+  +  M E G  P+++ F    +AC+    + VG+ +    ++ G+   D 
Sbjct: 145 NNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDV 204

Query: 230 FVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            V   L+DM+ K  GD+V A  VF+++  ++ +++  M+T  +  G   EA D+F  MI 
Sbjct: 205 CVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIF 264

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DGK 342
           +G++PD   +S ++   AN  LL +G Q+H   +R G+  D C+   LI +Y+K   DG 
Sbjct: 265 SGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGS 324

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQMERDGVLPDHLTFVSLLS 398
           +  A  +FD +   +V SW ++I  + +    D EAL  F  M    V+P+H TF S L 
Sbjct: 325 MCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE---AYSMIVEK 452
           ACA+L ++++GE++F+  V K G S        ++++Y R+G ID+   A+ ++ EK
Sbjct: 385 ACANLAALRIGEQVFTHAV-KLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 165/574 (28%), Positives = 279/574 (48%), Gaps = 77/574 (13%)

Query: 16   VIIHCGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSI 75
            V + C   N   R    +K  Q+       F   P  +P  LL N+      + + L   
Sbjct: 709  VYLRCALMNFYGRCWGLEKANQV-------FHEMP--NPEALLWNEAIILNLQSEKLQKG 759

Query: 76   IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
            ++       + +  +T T   +L+ C ++ A+    ++H  +    L  +  + + L+ +
Sbjct: 760  VELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISM 819

Query: 136  YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-------- 187
            Y+  G ++ A +VFD M NR   +  WNS+IS YA LG   DA +L++++E         
Sbjct: 820  YSKNGKLELARRVFDSMENRNTSS--WNSMISSYAALGFLNDAWSLFYELESSDMKPDIV 877

Query: 188  ---------------------------EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
                                       EG +P+  +   VL+A + LG + +G++ H   
Sbjct: 878  TWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYV 937

Query: 221  VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
            +R GF  D +V  +L+DMY K   +  A+ VFD + N+++ ++NS+++GY   G+  +A 
Sbjct: 938  LRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDAL 997

Query: 281  DIFRGMILNGFDPDPVAISSIL---------------------------ANASLLRIGAQ 313
             +   M   G  PD V  + ++                           A+ SLL+ G +
Sbjct: 998  RLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKE 1057

Query: 314  VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---K 370
            +H   +R G   D+ +A +LI +YSK   L  A  +F  +  K + SWN +I   +    
Sbjct: 1058 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 1117

Query: 371  DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
              EA+  F +M++ GV PD +TF +LLSAC + G +  G + F  M+  Y I PR+EHY 
Sbjct: 1118 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 1177

Query: 431  CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
            CMV+L GRAG +DEA+ +I   M  +    +WGALL +C +H N+   ETAA+ LF+LEP
Sbjct: 1178 CMVDLLGRAGYLDEAWDLI-HTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEP 1236

Query: 491  DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +N  N+ L++ +Y    R +D++ +  ++   G+
Sbjct: 1237 NNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 1270



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/526 (23%), Positives = 231/526 (43%), Gaps = 103/526 (19%)

Query: 86   GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
            G+   +E ++  L+TC ++  +  G+++H  +       +  +   L+  Y     +++A
Sbjct: 669  GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA 728

Query: 146  HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +QVF +M N  A    WN  I    +  + +  + L+ +M+   ++ +  T  RVL+AC 
Sbjct: 729  NQVFHEMPNPEALL--WNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACG 786

Query: 206  GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK------- 258
             +G +   +++H    RFG   D  + N L+ MY+K G +  AR VFD + N+       
Sbjct: 787  KMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNS 846

Query: 259  ----------------------------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
                                        D++++N +L+G+  HG   E  +I + M   G
Sbjct: 847  MISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEG 906

Query: 291  FDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            F P+  +++S+L   S    L +G + HG+VLR G + D+ +  SLI +Y K+  L  A 
Sbjct: 907  FKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQ 966

Query: 348  WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF----------- 393
             +FD+M  +++ +WNS++  +S      +AL    QME++G+ PD +T+           
Sbjct: 967  AVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG 1026

Query: 394  -------------VSLLSACAHLGSVKVGERLF---------------SVMVEKYGISPR 425
                           LL ACA L  ++ G+ +                + +++ Y  S  
Sbjct: 1027 CARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSS 1086

Query: 426  VEH---------------YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYA 468
            +++               + CM+  +   GL  EA S+  E  +    P  + + ALL A
Sbjct: 1087 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSA 1146

Query: 469  CYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
            C   G +  G      +   + + P  EH +  ++ + G AG LD+
Sbjct: 1147 CKNSGLIGEGWKYFDSMITDYRIVPRLEH-YCCMVDLLGRAGYLDE 1191


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 262/491 (53%), Gaps = 20/491 (4%)

Query: 46  FSSYPKSSP-----TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLET 100
           FSS P  S      T L+T    F K   +AL +    +  S   G+     TF+++L  
Sbjct: 85  FSSAPDDSKNVVSWTSLITQLTRF-KRPFKAL-TFFNHMRRS---GVYPNHYTFSAVLSA 139

Query: 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           C    A  HG ++H L+  +       + S L+ +YA    +  A +VF++M  R   + 
Sbjct: 140 CTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVS- 198

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLD 219
            WN++I G+ +   Y+ AI  +  +  E +   D+ +F  V  ACA  G +  G++VH  
Sbjct: 199 -WNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGV 257

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++ G     ++ N+L DMY KCG       +F   G +D++++N M+  Y+++    +A
Sbjct: 258 ALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDA 317

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            + F  M   G  PD  + SS+L   AN + L  G  +H  ++R G   +L +A+SLI +
Sbjct: 318 CNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITM 377

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y+K G L  A  +F+    ++VV W +II A   H   +  +  FEQM R+G+ PD++TF
Sbjct: 378 YAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITF 437

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           VS+LSAC+H G V+ G   F+ M++ +GI P  EHYAC+V+L  RAG +D A   I E M
Sbjct: 438 VSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFI-ELM 496

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
             +    VWGALL AC  H N+ MG+  A KLF+LEPDN  N+ LL  I    G L++ +
Sbjct: 497 PIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEAD 556

Query: 514 RVERMLVDRGL 524
            V R +   G+
Sbjct: 557 EVRRKMESIGV 567



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 199/378 (52%), Gaps = 12/378 (3%)

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
           +  +H  ++H  + T  L     + + LL LYA  G +D+   +F    + +     W S
Sbjct: 41  RTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTS 100

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           LI+          A+  +  M   GV P+ +TF  VL AC        GE++H    + G
Sbjct: 101 LITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHG 160

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F  + FV++ALVDMYAKC D++ A  VF+ +  ++L+S+N+M+ G++ + L  +A   F+
Sbjct: 161 FLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFK 220

Query: 285 GMILNGFDP-DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC-IANSLIVVYSK 339
            ++L      D V+ SS+    ANA  L  G QVHG  L+ GV W+L  I NSL  +Y K
Sbjct: 221 TLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV-WNLVYINNSLSDMYGK 279

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSL 396
            G  +    LF +   +DVV+WN +I A+  +H   +A   F  M R G +PD  ++ S+
Sbjct: 280 CGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSV 339

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L +CA+L ++  G  + + ++ + G    +   + ++ +Y + G + +A+  I E+ E +
Sbjct: 340 LHSCANLAALYQGTLIHNQII-RSGFVKNLRVASSLITMYAKCGSLVDAFQ-IFEETE-D 396

Query: 457 ASPVVWGALLYACYLHGN 474
            + V W A++ AC  HG+
Sbjct: 397 RNVVCWTAIIAACQQHGH 414


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 277/513 (53%), Gaps = 59/513 (11%)

Query: 69  LQALDSI--IQDLESSVQN-GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           +Q  DSI  ++  E   ++ GI     +  ++L  C  + A   G ++H     + L ++
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 284

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             + + ++ +YA  G+++EA++VF++M  +   +  WN++++GY+++G ++DA+ L+ ++
Sbjct: 285 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS--WNAMVTGYSQIGRFDDALGLFEKI 342

Query: 186 EEE-----------------------------------GVEPDQFTFPRVLKACAGLGLI 210
            EE                                   G EP+  T   +L  CA  G +
Sbjct: 343 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTL 402

Query: 211 RVGEKVHLDAVRFGF-------GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD--LI 261
             G++ H  A+++         G D  V+NAL+DMY+KC     AR +FD I  KD  ++
Sbjct: 403 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 462

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMIL--NGFDPDPVAIS-SILANASL--LRIGAQVHG 316
           ++  ++ G   HG   EA ++F  M+   N   P+   IS +++A A L  LR G Q+H 
Sbjct: 463 TWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 522

Query: 317 WVLRRGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
           +VLR   E   L +AN LI +YSK G +D A  +FD+M Q++ VSW S++     H +  
Sbjct: 523 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 582

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL  F +M++  ++PD +TFV +L AC+H G V  G   F+ M + +G+ P  EHYACM
Sbjct: 583 EALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 642

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L  RAG +DEA  +I   M  + +P VW ALL AC ++ NV +GE AA +L ELE  N
Sbjct: 643 VDLLSRAGRLDEAMELI-RGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGN 701

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + ++ LL  IY NA    DV R+  ++ + G++
Sbjct: 702 DGSYTLLSNIYANARCWKDVARIRYLMKNTGIK 734



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 241/492 (48%), Gaps = 59/492 (11%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           SS T    NQ       L  L+ ++Q      + G      TF  +L+ C ++ +   G 
Sbjct: 106 SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 165

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYA 170
            +H ++  +    N  + + L+ +Y   G  + A QVFD+M  R       WNS+++ Y 
Sbjct: 166 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 225

Query: 171 ELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           + G+   A+ ++ +M E+ G+ PD  +   VL ACA +G    G++VH  A+R G   D 
Sbjct: 226 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDV 285

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT--------------------- 268
           FV NA+VDMYAKCG + +A  VF+R+  KD++S+N+M+T                     
Sbjct: 286 FVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 345

Query: 269 --------------GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
                         GY   GL  EA D+FR M+L G +P+ V + S+L   A+A  L  G
Sbjct: 346 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHG 405

Query: 312 AQVH----GWVL---RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD--VVSWN 362
            + H     W+L         DL + N+LI +YSK      A  +FD +P KD  VV+W 
Sbjct: 406 KETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 465

Query: 363 SIIHA---HSKDHEALIYFEQMER--DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
            +I     H + +EAL  F QM +  + V+P+  T    L ACA LG+++ G ++ + ++
Sbjct: 466 VLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVL 525

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
                S  +    C++++Y ++G +D A  ++ + M  + + V W +L+    +HG    
Sbjct: 526 RNRFESAMLFVANCLIDMYSKSGDVDAA-RVVFDNMH-QRNGVSWTSLMTGYGMHGR--- 580

Query: 478 GETAAQKLFELE 489
           GE A Q  +E++
Sbjct: 581 GEEALQIFYEMQ 592



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 215/483 (44%), Gaps = 74/483 (15%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE--HGIKLHRLIPTNLL 122
           PK  L  L +      SS        T+  ++L   C  L + E  H   L + +P +  
Sbjct: 29  PKPPLLFLTTFFFSTASST-------TDLTSTLFHQCKSLASAELTHQQLLVQGLPHD-- 79

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
                  + ++ +Y TF    +A  V  ++   +   F WN LI     LG  ED + LY
Sbjct: 80  ------PTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLY 133

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M+  G  PD +TFP VLKAC  +   R G  VH      GF ++ FV N LV MY +C
Sbjct: 134 RRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRC 193

Query: 243 GDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAI 298
           G    AR VFD +   G  DL+S+NS++  Y+  G  + A  +F  M  + G  PD V++
Sbjct: 194 GAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSL 253

Query: 299 SSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
            ++L   A+      G QVHG+ LR G+  D+ + N+++ +Y+K G +++A  +F+ M  
Sbjct: 254 VNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKV 313

Query: 356 KDVVSWNSIIHAHSK--------------------------------------DHEALIY 377
           KDVVSWN+++  +S+                                        EAL  
Sbjct: 314 KDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDV 373

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL------FSVMVEKYGISPRVEHYAC 431
           F QM   G  P+ +T VSLLS CA  G++  G+        + + +++      +     
Sbjct: 374 FRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINA 433

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LE 489
           ++++Y +      A +M       + S V W  L+     HG        A +LF   L+
Sbjct: 434 LIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEA----NEALELFSQMLQ 489

Query: 490 PDN 492
           PDN
Sbjct: 490 PDN 492


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 236/445 (53%), Gaps = 30/445 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI V   T  S+L  C     +  G  +H L   +   +    S+ LL +Y+  G +D A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF++M  R   +  W S+I+GY   G  + AI L  QME+EGV+ D      +L ACA
Sbjct: 306 LRVFEKMGERNVVS--WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH          + FV NAL+DMYAKCG +  A +VF  +  KD+IS+N+
Sbjct: 364 RSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNT 423

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+                         PD   ++ +L   A+ S L  G ++HG++LR G
Sbjct: 424 MI---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNG 462

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+L+ +Y K G L  A  LFD +P KD+VSW  +I     H   +EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 522

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD ++F+S+L AC+H G ++ G R F +M   + I P++EHYACMV+L  R 
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  I E +       +WGALL  C  + ++ + E  A+++FELEP+N   + LL
Sbjct: 583 GNLSKAYEFI-ETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLL 641

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A + ++V+R+   +  +GL
Sbjct: 642 ANIYAEAEKWEEVKRLREKIGKQGL 666



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 211/461 (45%), Gaps = 83/461 (18%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++T+T++S+L+ C  LK+   G K+H +I +N +  ++ +  KL+  YAT G + E  +V
Sbjct: 97  LETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 149 FDQMSNRTAF-------------------------------------------------A 159
           FD M  +  +                                                  
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDV 216

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WNS+ISGY   G  E  + +Y QM   G++ D  T   VL  CA  G + +G+ VH  
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++  F       N L+DMY+KCGD+  A  VF+++G ++++S+ SM+ GY   G    A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             + + M   G   D VAI+SIL   A +  L  G  VH ++    +E +L + N+L+ +
Sbjct: 337 IKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSL 396
           Y+K G ++ A  +F  M  KD++SWN++I                    + PD  T   +
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIGE------------------LKPDSRTMACV 438

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEA---YSMIVEK 452
           L ACA L +++ G+ +   ++     S R  H A  +V+LY + G++  A   + MI  K
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 453 MEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPD 491
                  V W  ++  Y  + +GN  +      +   +EPD
Sbjct: 497 -----DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 169/364 (46%), Gaps = 79/364 (21%)

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           HQV D           +N+ I  + +LG+ E+A+ L    ++  +E    T+  VL+ CA
Sbjct: 64  HQVTD-----------YNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCA 110

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV-------------- 251
           GL     G+KVH        G D  +   LV  YA CGD+ + R V              
Sbjct: 111 GLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNF 170

Query: 252 -------------------------------------FDRIGNKDLISYNSMLTGYIHHG 274
                                                FD++ ++D+IS+NSM++GY+ +G
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNG 230

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L      I++ M+  G D D   I S+L   AN+  L +G  VH   ++   E  +  +N
Sbjct: 231 LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSN 290

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLP 388
           +L+ +YSK G LD A  +F+ M +++VVSW S+I  +++D     A+   +QME++GV  
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL 350

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH--YAC--MVNLYGRAGLIDE 444
           D +   S+L ACA  GS+  G+      V  Y  +  +E   + C  ++++Y + G ++ 
Sbjct: 351 DVVAITSILHACARSGSLDNGKD-----VHDYIKANNMESNLFVCNALMDMYAKCGSMEA 405

Query: 445 AYSM 448
           A S+
Sbjct: 406 ANSV 409


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 160/487 (32%), Positives = 270/487 (55%), Gaps = 25/487 (5%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           SSP  +L  Q   P ++L +   + + L   V  G  +    + +LL  C   +A+  G 
Sbjct: 14  SSPNSVL--QTFRPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREGQ 71

Query: 112 KLH------RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           ++H      R +P   LR      ++LL  Y     +++A +V D+M  +   +  W ++
Sbjct: 72  RVHAHMIKTRYLPATYLR------TRLLIFYGKCDCLEDARKVLDEMPEKNVVS--WTAM 123

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           IS Y++ G   +A++++ +M     +P++FTF  VL +C     + +G+++H   V++ +
Sbjct: 124 ISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNY 183

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
               FV ++L+DMYAK G I +AR +F+ +  +D++S  +++ GY   GL  EA ++F+ 
Sbjct: 184 DSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQR 243

Query: 286 MILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           +   G  P+ V  +S+L   S   LL  G Q H  VLRR + +   + NSLI +YSK G 
Sbjct: 244 LQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 303

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQM-ERDGVLPDHLTFVSLLS 398
           L  A  LFD+MP++  +SWN+++  +SK     E L  F  M +   V PD +T +++LS
Sbjct: 304 LSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 363

Query: 399 ACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            C+H      G  ++  MV  +YGI P  EHY C+V++ GRAG IDEA+  I ++M  + 
Sbjct: 364 GCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFI-KRMPSKP 422

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           +  V G+LL AC +H +V +GE    +L E+EP+N  N+ +L  +Y +AGR +DV  V  
Sbjct: 423 TAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRA 482

Query: 518 MLVDRGL 524
           M++ + +
Sbjct: 483 MMMQKAV 489


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 248/460 (53%), Gaps = 11/460 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D +++ L      GI     T  SLL  C Q +AV+ G  ++  +    +  +  I + L
Sbjct: 204 DKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNAL 263

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G + +A + F  M  R  +   WN+LI G+ +  E+++A+ ++ +M   GV P
Sbjct: 264 ISMYTKCGCLSDALEAFQAMPAR--YTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTP 321

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   VL ACA LG +R G  VH      G   D  + N+L++MYAKCGD+  A  VF
Sbjct: 322 DGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVF 381

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI-- 310
             +  KD++S+  M+ GY+       AF++F  M +       +A+ S+L+  S L    
Sbjct: 382 QTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALD 441

Query: 311 -GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G ++H ++    V  DLC+ ++L+ +Y+K G +D A  +F  M  K  +SWN++I   +
Sbjct: 442 KGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLA 501

Query: 370 KD---HEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            +    EA+  F+QM E     PD +T  ++L ACAH+G V  G R F +M    G+ P 
Sbjct: 502 SNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLM-SSLGVVPD 560

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
            EHY C+V+L GRAG++DEA+  I +KM  E +PV+WG+LL AC +H  + +G+   Q +
Sbjct: 561 TEHYGCIVDLLGRAGMLDEAFHFI-KKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHI 619

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + P++     L+  ++    + DDVE V  ++  RG+E
Sbjct: 620 VNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIE 659



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 193/369 (52%), Gaps = 11/369 (2%)

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           LK   +G  +H L+       +  + S L+  Y  F  + EA +VF++M  R   +  W 
Sbjct: 134 LKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVS--WT 191

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           S+IS  A+ G ++  + +  +M+ EG+ P++ T   +L AC     +  G  V+    +F
Sbjct: 192 SMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKF 251

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G   D  + NAL+ MY KCG +  A   F  +  +   S+N+++ G++ +    EA  IF
Sbjct: 252 GIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIF 311

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M+L+G  PD + + S+L   A    LR G  VH ++   G+  D  + NSLI +Y+K 
Sbjct: 312 EEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKC 371

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLL 397
           G +  A  +F  M +KDVVSW  ++  + K H+   A   FE+M+   V+   +  VSLL
Sbjct: 372 GDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLL 431

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           SAC+ LG++  G  + S  +E+  ++  +   + +V++Y + G ID A S I  KM+ + 
Sbjct: 432 SACSQLGALDKGREIHSY-IEEMNVAKDLCLESALVDMYAKCGCIDTA-SEIFRKMQHKQ 489

Query: 458 SPVVWGALL 466
           + + W A++
Sbjct: 490 T-LSWNAMI 497



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 15/344 (4%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE---AHQVFDQMSNRTAFAFPWNSL 165
           H  +LH  +    L  +  ++ +L+ L A+     +   A +VFD M+   AF   WN +
Sbjct: 32  HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFV--WNCM 89

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTF---PRVLKACAGLGLIRVGEKVHLDAVR 222
           I GY+      DA+A++ +M   GV PD +T         A AGL     G+ +H    R
Sbjct: 90  IRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRR 149

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GF  D FV++ LV+ Y     + +A  VF+ +  +D++S+ SM++     G   +   +
Sbjct: 150 IGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKM 209

Query: 283 FRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
              M   G  P+ V I S+L+     +    G  V+  V + G+E D+ I N+LI +Y+K
Sbjct: 210 LSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTK 269

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSL 396
            G L  A   F  MP +   SWN++I    ++H   EAL  FE+M   GV PD +T VS+
Sbjct: 270 CGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSV 329

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           LSACA LG ++ G  + S  ++  GI         ++N+Y + G
Sbjct: 330 LSACAQLGELRKGMHVHSY-IKDNGICCDNILTNSLINMYAKCG 372


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 234/404 (57%), Gaps = 12/404 (2%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF--QMEE 187
           +KLL L    G I    Q+F  + N  +F F   SLI   ++   +    +LYF  +M  
Sbjct: 48  TKLLNLACAAGSISYTRQIFLIVPNPDSFLF--TSLIRSTSKFHNF-SVYSLYFYTRMVL 104

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             V P  +TF  V+K+CA L  +R G  +H   +  GFG D +V  AL+  Y KCG +  
Sbjct: 105 SNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCN 164

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           AR VFD++ ++ ++++NSM++GY  +G   EA  +F  M   G +P+     S+L+  + 
Sbjct: 165 ARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAH 224

Query: 308 LR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L    +G  VH + +  G++ ++ +  SLI +Y++ G + +A  +FD M +++VV+W ++
Sbjct: 225 LGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAM 284

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  +  +    +A+  F +M R+G+LP+ +TFV++LSACAH G V  G R+F  M E+Y 
Sbjct: 285 ISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYR 344

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P VEH+ C+V++ GRAGL+DEAY+ I E  E E +P +W A+L AC +H N  +G   
Sbjct: 345 LVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHE-EPAPAIWTAMLGACKMHKNFGLGAQV 403

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A+     EP N  ++ +L  IY  AGR+D VE V   ++ + L+
Sbjct: 404 AEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLK 447



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 48/379 (12%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V + +     TF S++++C  L A+ HG  +H  +  N    +  + + L+  Y   G++
Sbjct: 103 VLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVL 162

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD+M +R+     WNS+ISGY + G  ++AI L+ +M+E GVEP+  TF  VL 
Sbjct: 163 CNARKVFDKMRDRSVVT--WNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLS 220

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG   +G  VH  AV  G   +  +  +L++MY +CG++ KAR VFD +  +++++
Sbjct: 221 ACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVA 280

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQV----- 314
           + +M++GY  +G   +A ++F  M  NG  P+    VA+ S  A+A L+  G +V     
Sbjct: 281 WTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMR 340

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
             + L   VE  +C+ + L     + G LD+A              +N I   H +    
Sbjct: 341 EEYRLVPEVEHHVCLVDML----GRAGLLDEA--------------YNFIKEIHEE---- 378

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
                        P    + ++L AC    +  +G ++    +     +P   HY  + N
Sbjct: 379 -------------PAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNP--AHYVILSN 423

Query: 435 LYGRAGLIDEAYSMIVEKM 453
           +Y  AG +D+   M+ + M
Sbjct: 424 IYALAGRMDQV-EMVRDNM 441



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 165/343 (48%), Gaps = 20/343 (5%)

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           ++++    P    +  +L+A   L L+    +VH   +  G+G   F+L  L+++    G
Sbjct: 2   EIKQHHKHPHSPAYNLLLQAGPRLKLL---HQVHAHVIVSGYGCSRFLLTKLLNLACAAG 58

Query: 244 DIVKARTVFDRIGNKDLISYNSML-TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
            I   R +F  + N D   + S++ +    H   V +   +  M+L+   P     +S++
Sbjct: 59  SISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVI 118

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A+   LR G  +HG VL  G   D+ +  +L+  Y K G L  A  +FD M  + VV
Sbjct: 119 KSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVV 178

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WNS+I  + ++    EA+  F++M+  GV P+  TFVS+LSACAHLG+  +G  +    
Sbjct: 179 TWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYA 238

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V   G+   V     ++N+Y R G + +A   + + M+ E + V W A++     +G   
Sbjct: 239 VGN-GLDLNVVLGTSLINMYTRCGNVSKARE-VFDSMK-ERNVVAWTAMISG---YGTNG 292

Query: 477 MGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDVERV 515
            G  A +   E+  +    N   F  ++    +AG +++  RV
Sbjct: 293 YGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRV 335


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 241/445 (54%), Gaps = 20/445 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG-----ISSKLLRLYATFGLIDEAHQ 147
           +   L++ C +    +HG  +HR +  +    + G     +S+ L  +YA FGL+D+A +
Sbjct: 66  SLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR 125

Query: 148 VFDQMSNRTAFAFPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +FD M  R      W ++++  A   G  ++A+     M  +GV P+ +TF  VL AC  
Sbjct: 126 MFDGMPVRNVVT--WTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTT 183

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
            G++     VH   V+ G   D FV ++L+D Y K GD+   R VFD +  +DL+ +NS+
Sbjct: 184 PGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSI 240

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGV 323
           + G+   G  V A ++F  M   GF  +   ++S+L   +   +L  G QVH  VL+   
Sbjct: 241 IAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--Y 298

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           + DL + N+L+ +Y K G L+ A  LF  MPQ+DV+SW++++     + K  EAL  F+ 
Sbjct: 299 DRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDL 358

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M+  GV P+H+T V +L AC+H G V+ G   F  M   +GI P  EH+ CMV+L GRAG
Sbjct: 359 MKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAG 418

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            +DEA   I   M  E   V+W  LL AC +H N  +   AA+++ +LEPD++    LL 
Sbjct: 419 KLDEAVEFI-HGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLS 477

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
             Y +  +  D E+  + + DRG+ 
Sbjct: 478 NTYADLRQWTDAEKPWKAMRDRGMR 502


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 248/460 (53%), Gaps = 11/460 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D +++ L      GI     T  SLL  C Q +AV+ G  ++  +    +  +  I + L
Sbjct: 204 DKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNAL 263

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G + +A + F  M  R  +   WN+LI G+ +  E+++A+ ++ +M   GV P
Sbjct: 264 ISMYTKCGCLSDALEAFQAMPAR--YTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTP 321

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   VL ACA LG +R G  VH      G   D  + N+L++MYAKCGD+  A  VF
Sbjct: 322 DGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVF 381

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI-- 310
             +  KD++S+  M+ GY+       AF++F  M +       +A+ S+L+  S L    
Sbjct: 382 QTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALD 441

Query: 311 -GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G ++H ++    V  DLC+ ++L+ +Y+K G +D A  +F  M  K  +SWN++I   +
Sbjct: 442 KGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLA 501

Query: 370 KD---HEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            +    EA+  F+QM E     PD +T  ++L ACAH+G V  G R F +M    G+ P 
Sbjct: 502 SNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLM-SSLGVVPD 560

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
            EHY C+V+L GRAG++DEA+  I +KM  E +PV+WG+LL AC +H  + +G+   Q +
Sbjct: 561 TEHYGCIVDLLGRAGMLDEAFHFI-KKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHI 619

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + P++     L+  ++    + DDVE V  ++  RG+E
Sbjct: 620 VNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIE 659



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 194/369 (52%), Gaps = 11/369 (2%)

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           LK   +G  +H L+       +  + S L+  Y  F  ++EA +VF++M  R   +  W 
Sbjct: 134 LKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVS--WT 191

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           S+IS  A+ G ++  + +  +M+ EG+ P++ T   +L AC     +  G  V+    +F
Sbjct: 192 SMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKF 251

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G   D  + NAL+ MY KCG +  A   F  +  +   S+N+++ G++ +    EA  IF
Sbjct: 252 GIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIF 311

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M+L+G  PD + + S+L   A    LR G  VH ++   G+  D  + NSLI +Y+K 
Sbjct: 312 EEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKC 371

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLL 397
           G +  A  +F  M +KDVVSW  ++  + K H+   A   FE+M+   V+   +  VSLL
Sbjct: 372 GDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLL 431

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           SAC+ LG++  G  + S  +E+  ++  +   + +V++Y + G ID A S I  KM+ + 
Sbjct: 432 SACSQLGALDKGREIHSY-IEEMNVAKDLCLESALVDMYAKCGCIDTA-SEIFRKMQHKQ 489

Query: 458 SPVVWGALL 466
           + + W A++
Sbjct: 490 T-LSWNAMI 497



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 15/344 (4%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE---AHQVFDQMSNRTAFAFPWNSL 165
           H  +LH  +    L  +  ++ +L+ L A+     +   A +VFD M+   AF   WN +
Sbjct: 32  HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFV--WNCM 89

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTF---PRVLKACAGLGLIRVGEKVHLDAVR 222
           I GY+      DA+A++ +M   GV PD +T         A AGL     G+ +H    R
Sbjct: 90  IRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRR 149

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GF  D FV++ LV+ Y     + +A  VF+ +  +D++S+ SM++     G   +   +
Sbjct: 150 IGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKM 209

Query: 283 FRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
              M   G  P+ V I S+L+     +    G  V+  V + G+E D+ I N+LI +Y+K
Sbjct: 210 LSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTK 269

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSL 396
            G L  A   F  MP +   SWN++I    ++H   EAL  FE+M   GV PD +T VS+
Sbjct: 270 CGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSV 329

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           LSACA LG ++ G  + S  ++  GI         ++N+Y + G
Sbjct: 330 LSACAQLGELRKGMHVHSY-IKDNGICCDNILTNSLINMYAKCG 372


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 262/476 (55%), Gaps = 18/476 (3%)

Query: 57  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-R 115
           LL   ++   T L ALD +IQ      +  +      ++ LL+ C +L  VE G  +H  
Sbjct: 60  LLRKSQSDGGTGLYALD-LIQ------RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAH 112

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
           L+ ++ L  +  + + ++ +YA  G +D+A ++FD+M  +      W +LI+G+++    
Sbjct: 113 LVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVT--WTALIAGFSQNNRP 170

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
            DA+ L+ QM   G++P+ FT   +LKA      +  G ++H   +++G+    +V +AL
Sbjct: 171 RDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSAL 230

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           VDMYA+CG +  A+  FD +  K  +S+N++++G+   G    A  +   M    F P  
Sbjct: 231 VDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTH 290

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              SS+    A+   L  G  VH  +++ G++    I N+L+ +Y+K G +D A  +FD 
Sbjct: 291 FTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDR 350

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           + + DVVSWN+++     H    E L  FEQM R G+ P+ ++F+ +L+AC+H G +  G
Sbjct: 351 LVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEG 410

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
              F +M +KY + P V HY   V+L GR GL+D A   I E M  E +  VWGALL AC
Sbjct: 411 LYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE-MPIEPTAAVWGALLGAC 468

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +H N+ +G  AA++ FEL+P +     LL  IY +AGR  DV +V +M+ + G++
Sbjct: 469 RMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVK 524


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 248/438 (56%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F S+L      + V+ G ++H L     L     I + L+ +YA  G +D++ QVF+  
Sbjct: 214 AFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMS 273

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +++ +    W+++I+GYA+ G+   A+ L+ +M   G+ P +FT   VL AC+    +  
Sbjct: 274 NDKNSIT--WSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEE 331

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   ++ GF    +++ ALVDMYAK G    AR  F+ +   DL+ + SM+ GY+ 
Sbjct: 332 GKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQ 391

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   +A  ++  M + G  P+ + ++S+L   +N +    G Q+H   ++ G+  ++ I
Sbjct: 392 NGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTI 451

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            ++L  +Y+K G L++   +F  MP++D++SWN++I   S++    EAL  FE+M +   
Sbjct: 452 GSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDT 511

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TFV++LSAC+H+G V  G   F +M +++G+ P+VEHYACMV++  RAG + EA 
Sbjct: 512 KPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAK 571

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E    +    +W  LL AC  + N  +G  A +KL EL       + LL  IY   
Sbjct: 572 EFI-ESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTAL 630

Query: 507 GRLDDVERVERMLVDRGL 524
           GR +DVERV  M+  RG+
Sbjct: 631 GRPEDVERVRSMMKVRGV 648



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 202/388 (52%), Gaps = 11/388 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           + I     TF+ +      L ++  G + H +        +  + S LL +Y   GL+ E
Sbjct: 105 DNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFE 164

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD+M  R      W ++ISGYA      +A  ++  M  E  + ++F F  VL A 
Sbjct: 165 AREVFDRMPERNEVT--WATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSAL 222

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A    +  G+++H  AV+ G      +LNALV MYAKCG +  +  VF+   +K+ I+++
Sbjct: 223 AVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWS 282

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +M+TGY   G   +A  +F  M   G +P    +  +L   ++A  +  G QVH ++L+ 
Sbjct: 283 AMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKL 342

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYF 378
           G E  L I  +L+ +Y+K G  + A   F+++ Q D+V W S+I  + ++ E   AL  +
Sbjct: 343 GFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLY 402

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M+ +G+LP+ LT  S+L AC++L +   G ++ +  + KYG+   V   + +  +Y +
Sbjct: 403 CRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTI-KYGLGLEVTIGSALSTMYAK 461

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G ++E  +++  +M  E   + W A++
Sbjct: 462 CGNLEEG-NIVFRRMP-ERDIISWNAMI 487



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 202/363 (55%), Gaps = 15/363 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI--SSKLLRLYATFGLIDEAHQVFD 150
           +F SL++  +Q K+++ G  LH  I   L   +  I  ++ L+  YA    + +A  VFD
Sbjct: 10  SFNSLVQFTHQ-KSLQKGRALHAQI-IKLASSSSCIYLANSLINFYAKCCHLPKAKLVFD 67

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDA--IALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           ++ N+   +  WN LI+GY++ G    +  + L+ +M  + + P+  TF  +  A + L 
Sbjct: 68  RIHNKDVIS--WNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLS 125

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            I  G++ H  A++    +D FV ++L++MY K G + +AR VFDR+  ++ +++ +M++
Sbjct: 126 SIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMIS 185

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEW 325
           GY    L  EAF++F  M     D +  A +S+   LA    +  G Q+H   ++ G+  
Sbjct: 186 GYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLV 245

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKD-HEALIYFEQME 382
            L I N+L+ +Y+K G LD +  +F+    K+ ++W+++I  +A S D H+AL  F +M 
Sbjct: 246 FLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMH 305

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ P   T V +L+AC+   +V+ G+++ + ++ K G   ++     +V++Y ++G+ 
Sbjct: 306 FAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLL-KLGFESQLYIMTALVDMYAKSGVT 364

Query: 443 DEA 445
           ++A
Sbjct: 365 EDA 367



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 138/271 (50%), Gaps = 18/271 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T   +L  C    AVE G ++H  +          I + L+ +YA  G+ ++A
Sbjct: 308 GINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDA 367

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F+ +         W S+I+GY + GE EDA++LY +M+ EG+ P++ T   VLKAC+
Sbjct: 368 RKGFNYLQQPDLVL--WTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACS 425

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L     G ++H   +++G G +  + +AL  MYAKCG++ +   VF R+  +D+IS+N+
Sbjct: 426 NLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNA 485

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR---- 321
           M++G   +G   EA ++F  M      PD V   ++L+  S   +G    GW+  R    
Sbjct: 486 MISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACS--HMGLVDSGWLYFRMMFD 543

Query: 322 ------GVEWDLCIANSLIVVYSKDGKLDQA 346
                  VE   C+ +    V S+ GKL +A
Sbjct: 544 EFGLLPKVEHYACMVD----VLSRAGKLYEA 570


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 250/445 (56%), Gaps = 9/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+  +L TC     +  G ++H L   N  + +  +S  L+ +Y+ +G +D+A
Sbjct: 340 GVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA 399

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++ D +  +   +  W S+I+GY +    ++A+  + +M+  G+ PD       + ACA
Sbjct: 400 QRILDMIEEKDVVS--WTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACA 457

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +  G ++H      G+  D  + N LV +YA+CG   +A + F+ I +K+ I++N 
Sbjct: 458 GIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNG 517

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASLLRI--GAQVHGWVLRRG 322
           +++G+   GL  EA  +F  M   G   +    +SSI A+A+L  I  G Q+H  V++ G
Sbjct: 518 LISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTG 577

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              +  I+N+LI +Y K G ++ A   F  M +++ VSWN+II     H +  EAL  F+
Sbjct: 578 YTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFD 637

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM++ G+ P  +TFV +L+AC+H+G V+ G   F  M  ++GI PR +HYAC+V++ GRA
Sbjct: 638 QMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRA 697

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D A    VE+M   A  +VW  LL AC +H N+ +GE AA+ L ELEP +  ++ LL
Sbjct: 698 GQLDRA-KRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLL 756

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
              Y   G+    +++ +++ DRG+
Sbjct: 757 SNAYAVTGKWASRDQIRKIMKDRGV 781



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 216/399 (54%), Gaps = 19/399 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G++  + T ASLL  C  +  +  G +LH  +    +  +  +   LL LY   G I+E
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A Q+FD   +RT     WN ++  Y ++ +   +  ++++M   GV P++FT+P +L+ C
Sbjct: 298 ALQIFDS-GDRTNVVL-WNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTC 355

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
              G I +GE++H   ++ GF  D +V   L+DMY+K G + KA+ + D I  KD++S+ 
Sbjct: 356 THTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWT 415

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRR 321
           SM+ GY+ H    EA + F+ M   G  PD + ++S ++  + ++    G+Q+H  V   
Sbjct: 416 SMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS 475

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ I N L+ +Y++ G   +A   F+ +  K+ ++WN +I   ++     EAL  F
Sbjct: 476 GYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVF 535

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M++ G   +  TFVS +SA A+L  +K G+++ + ++ K G +   E    +++LYG+
Sbjct: 536 MKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVI-KTGYTSETEISNALISLYGK 594

Query: 439 AGLIDEAYSMIVEKMEF----EASPVVWGALLYACYLHG 473
            G I++A      KM+F    + + V W  ++  C  HG
Sbjct: 595 CGSIEDA------KMDFFEMTKRNEVSWNTIITCCSQHG 627



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 201/376 (53%), Gaps = 19/376 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           I + L+ LYA  G +  A +VF+++S R   +  W +++SGYA+ G  E+A+ LY +M  
Sbjct: 79  IGNLLIDLYAKKGFVRRARRVFEELSVRDNVS--WVAVLSGYAQNGLGEEAVRLYREMHR 136

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV P  +    +L AC    L ++G  +H+   + GF  + FV NAL+ +Y +C     
Sbjct: 137 SGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRL 196

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A  VF  +   D +++N++++G+   G    A  IF  M L+G  PD V I+S+LA  S 
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 308 ---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              LR G Q+H ++L+ G+  D  +  SL+ +Y K G +++A  +FD   + +VV WN +
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 365 IHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           + A+ +  +   +   F +M   GV P+  T+  +L  C H G + +GE++ S+ + K G
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTI-KNG 375

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
               +     ++++Y + G +D+A   I++ +E E   V W +++ A Y+    C  + A
Sbjct: 376 FQSDMYVSGVLIDMYSKYGWLDKA-QRILDMIE-EKDVVSWTSMI-AGYVQHEFC--KEA 430

Query: 482 AQKLFELE-----PDN 492
            +   E++     PDN
Sbjct: 431 LETFKEMQACGIWPDN 446



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 10/301 (3%)

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-I 210
           M+ R A +F  N  ++G+    + E  + L+     + +      F   L+AC G G   
Sbjct: 1   MTPRGAASF--NRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRW 58

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +  ++H  A+  G      + N L+D+YAK G + +AR VF+ +  +D +S+ ++L+GY
Sbjct: 59  PLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDL 327
             +GL  EA  ++R M  +G  P P  +SSIL+  +   L ++G  +H  V ++G   + 
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERD 384
            + N+LI +Y +      A  +F  M   D V++N++I  H++      AL  F++M+  
Sbjct: 179 FVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLS 238

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PD +T  SLL+AC+ +G ++ G++L S ++ K G+S        +++LY ++G I+E
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLL-KAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 445 A 445
           A
Sbjct: 298 A 298



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           Q G      TF S +     L  ++ G ++H R+I T    + + IS+ L+ LY   G I
Sbjct: 540 QAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETE-ISNALISLYGKCGSI 598

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F +M+ R   +  WN++I+  ++ G   +A+ L+ QM+++G++P   TF  VL 
Sbjct: 599 EDAKMDFFEMTKRNEVS--WNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLT 656

Query: 203 ACAGLGLIRVG 213
           AC+ +GL+  G
Sbjct: 657 ACSHVGLVEEG 667


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 239/449 (53%), Gaps = 45/449 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  GI     T   +L+ C + +AV  G ++H       L  +  +S+ L+R+YA   +I
Sbjct: 132 LSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVI 191

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD    R   +  W ++I GY ++G   + + LY                    
Sbjct: 192 RSARKVFDTSPQRDLVS--WTTMIQGYVKMGFAREGVGLY-------------------- 229

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
                 +IR    V+LD          FV NALVDMY KCGD   AR VF  +  K+++S
Sbjct: 230 ------IIR-NSNVNLDV---------FVGNALVDMYLKCGDANFARKVFQEMPVKNVVS 273

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NSM++G    G   E+  +FR M   G  PD V + ++L   AN  +L +G  VH ++ 
Sbjct: 274 WNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLD 333

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALI 376
           R  +  D  I N+L+ +Y+K G +DQACW+F  M +KDV S+ ++I     H +  +AL 
Sbjct: 334 RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALD 393

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M + G+ PD +TFV +L+AC+H+G V+ G + F  M   Y + P++EHY CMV+L 
Sbjct: 394 LFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLL 453

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAGLI+EA   I   M  E    V GALL AC +HG V +GE+  +K+ ++EP  +  +
Sbjct: 454 GRAGLINEAEEFI-RNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAY 512

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L+  IY +A R  D  ++ + + +R LE
Sbjct: 513 VLMSNIYSSANRWRDALKLRKTMKERNLE 541



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 218/467 (46%), Gaps = 80/467 (17%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK--GISSKLLRLYATFGLIDEAHQVFD 150
           +F S L+TC  +K ++   ++H  I   +   +    IS++L  L A    ID  + +  
Sbjct: 39  SFLSTLQTCKSIKGLK---QIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSL 95

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
               RT     +N++I G A       + + +Y QM  +G+ PD +T P VLKACA    
Sbjct: 96  LAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRA 155

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +R GE+VH  A++ G   D +V N L+ MYA C  I  AR VFD    +DL+S+ +M+ G
Sbjct: 156 VREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQG 215

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           Y+  G   E   ++                 I+ N++                V  D+ +
Sbjct: 216 YVKMGFAREGVGLY-----------------IIRNSN----------------VNLDVFV 242

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+ +Y K G  + A  +F  MP K+VVSWNS+I   ++     E+L  F +M+R GV
Sbjct: 243 GNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV 302

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA- 445
            PD +T V++L++CA+LG +++G+ + + + ++  I         +V++Y + G ID+A 
Sbjct: 303 KPDDVTLVAVLNSCANLGVLELGKWVHAYL-DRNQIRADGFIGNALVDMYAKCGSIDQAC 361

Query: 446 -----------YS---MIV------------------EKMEFEASPVVWGALLYACYLHG 473
                      YS   MIV                   KM  E   V +  +L AC   G
Sbjct: 362 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 421

Query: 474 NVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
            V  G    + +   + L P  EH +  ++ + G AG +++ E   R
Sbjct: 422 LVEEGRKYFEDMSTIYNLRPQLEH-YGCMVDLLGRAGLINEAEEFIR 467


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 267/491 (54%), Gaps = 25/491 (5%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGI---TVQTETFASLLETC 101
           TFS     SP+P            L+ L S  Q  E+ +Q  I    V+ E + S+L  C
Sbjct: 24  TFSRQISFSPSP-----------NLKTLCSSGQLKEALLQMAILGREVKFEGYDSILNEC 72

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
              +A+  G ++H  +       +  + ++L+ LY     + +A  +FD+M  R   +  
Sbjct: 73  VSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVS-- 130

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W ++IS Y++ G   +A+ L+ +M     EP+ FTF  +L +C G      G ++H  A+
Sbjct: 131 WTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAI 190

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  +    FV ++L+DMYAK G I  A  VF  +  +D+++  ++++GY   GL  EA  
Sbjct: 191 KRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALK 250

Query: 282 IFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +FR + + G + + V  +S+L   S    L  G QVH  VLR G    + + NSLI +YS
Sbjct: 251 LFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYS 310

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERDGVLPDHLTFV 394
           K G +  A  +FD MP++  +SWN+++  +SK     E L  F+ M E + V PD +T++
Sbjct: 311 KCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYL 370

Query: 395 SLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           ++LS C+H     +G  +F  MV  K GI P + HY C+V+L GRAG ++EA+  I +KM
Sbjct: 371 AVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFI-KKM 429

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            F  +  +WG+LL +C +H +V +G    QKL ELEP+N  N+ +L  +Y +AG+ +D+ 
Sbjct: 430 PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMR 489

Query: 514 RVERMLVDRGL 524
            +  ++ ++ +
Sbjct: 490 NIRDLMQEKAV 500


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/497 (31%), Positives = 267/497 (53%), Gaps = 33/497 (6%)

Query: 31  RRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           RR     +SRN I+ F+SY +   +P   +                   E +V     VQ
Sbjct: 27  RRSNTSSLSRN-ISVFASYEQEELSPGRYSD------------------EFNV-----VQ 62

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
              F  +L+ C +  AV      H       L+ +  +S+ L+  Y+  G ++ A QVFD
Sbjct: 63  ASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFD 122

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  R+  +  WN++I  Y       +A+ ++++M  EG +  +FT   VL AC      
Sbjct: 123 GMLERSLVS--WNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDA 180

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
              +K+H  +++     + +V  AL+D+YAKCG I  A  VF+ + +K  ++++SM+ GY
Sbjct: 181 LECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGY 240

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
           +      EA  ++R       + +   +SS++   +N + L  G Q+H  + + G   ++
Sbjct: 241 VQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNV 300

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            +A+S + +Y+K G L ++  +F  + +K++  WN+II     H++  E +I FE+M++D
Sbjct: 301 FVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQD 360

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ P+ +TF SLLS C H G V+ G R F +M   YG+SP V HY+CMV++ GRAGL+ E
Sbjct: 361 GMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSE 420

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           AY +I + + FE +  +WG+LL +C +  N+ + E AA+KLFELEP+N  N  LL  IY 
Sbjct: 421 AYELI-KSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYA 479

Query: 505 NAGRLDDVERVERMLVD 521
              + +++ +  ++L D
Sbjct: 480 ANKQWEEIAKSRKLLRD 496


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 260/486 (53%), Gaps = 28/486 (5%)

Query: 47  SSYPKSS-PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           S+ P+SS P  L    K+     L AL + +  L  ++++G      T  +LL       
Sbjct: 42  SAAPRSSVPASLPAALKSCAALGLSALGASLHAL--AIRSGAFADRFTANALL------- 92

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
                  L+  +P + L  + G++  ++ +  +    +   +VFD+M  R   +  WN+L
Sbjct: 93  ------NLYCKVPCSYL-DSTGVA--IVDVPGSSTAFESVRKVFDEMIERDVVS--WNTL 141

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           + G AE G + +A+    +M  EG  PD FT   VL   A    ++ G +VH  A R GF
Sbjct: 142 VLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGF 201

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             D FV ++L+DMYA C     +  VFD +  +D I +NS+L G   +G + EA  IFR 
Sbjct: 202 DSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRR 261

Query: 286 MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           M+  G  P PV  SS++    N + LR G Q+H +V+  G E ++ I++SLI +Y K G+
Sbjct: 262 MLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGE 321

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           +  A  +FD M   DVVSW ++I     H    EAL+ FE+ME     P+H+TF+++L+A
Sbjct: 322 ISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTA 381

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+H G V  G + F  M   YGI P +EH+A + +  GRAG +DEAY+ I  KM+ + + 
Sbjct: 382 CSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFI-SKMQIKPTA 440

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            VW  LL AC +H N  + E  A+K+ ELEP +  +  +L  +Y  +GR ++   +   +
Sbjct: 441 SVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESM 500

Query: 520 VDRGLE 525
             +G++
Sbjct: 501 RKKGMK 506



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 175/341 (51%), Gaps = 34/341 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--TFPRVLKACAGLGLIRVGEKVHLD 219
           W   I   A  G + DA++L+ +M            + P  LK+CA LGL  +G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 220 AVRFGFGFDGFVLNALVDMYAK--CG----------DIVKA-------RTVFDRIGNKDL 260
           A+R G   D F  NAL+++Y K  C           D+  +       R VFD +  +D+
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           +S+N+++ G    G   EA    R M   GF PD   +S++L   A  + ++ G +VHG+
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
             R G + D+ + +SLI +Y+   + D +  +FD++P +D + WNS++   +++    EA
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F +M + GV P  +TF SL+  C +L S++ G++L + ++   G    V   + +++
Sbjct: 256 LGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICG-GFEDNVFISSSLID 314

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHG 473
           +Y + G I  A+  I +KM   +SP  V W A++    LHG
Sbjct: 315 MYCKCGEISIAHC-IFDKM---SSPDVVSWTAMIMGYALHG 351


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 228/411 (55%), Gaps = 17/411 (4%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + LL LYA  GL+  A +VFD+M + +  +  W +LI+ Y + G+  +A+ +   
Sbjct: 152 NPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVS--WTALITAYMDAGDLREAVHVARN 209

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
               G+ PD FT  RVL ACA +  +  GE V   A + G     FV  A VD+Y KCG+
Sbjct: 210 AFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGE 269

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + KAR VFD++ +KD +++ +M+ GY  +G   EA D+F  M   G  PD  A++  L+ 
Sbjct: 270 MAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSA 329

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----SLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            +  R+GA   G    R V+WD  + N     +LI +Y+K G   +A  +F  M +KD++
Sbjct: 330 CT--RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDII 387

Query: 360 SWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
            WN++I       H K   A     QME+ GV  +  TF+ LL +C H G ++ G R F 
Sbjct: 388 VWNAMILGLGMTGHEK--TAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 445

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + Y ISPR+EHY C+V+L  RAGL+ EA+ +I + M   A+ V+ GALL  C +H N
Sbjct: 446 NMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLI-DDMPMPANAVILGALLGGCKIHRN 504

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + E    +L  LEP N  N+ +L  IY N GR +D  ++   + ++G+E
Sbjct: 505 AELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 555



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 153/291 (52%), Gaps = 12/291 (4%)

Query: 192 PDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           P   TFP  LK+ + L   +R GE++H  +++     +  VL +L+ +YA+CG + +A+ 
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASL 307
           VFD + +   +S+ +++T Y+  G L EA  + R    NG  PD    V + +  A  + 
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L  G  V     + G+   + +A + + +Y K G++ +A  +FD M  KD V+W +++  
Sbjct: 235 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGG 294

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM-VEKYGIS 423
           ++ +    EAL  F  M+ +GV PD       LSAC  LG++ +G +   ++  +++  +
Sbjct: 295 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 354

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           P +     ++++Y + G   EA+ ++ ++M  +   +VW A++    + G+
Sbjct: 355 PVLG--TALIDMYAKCGSTAEAW-VVFQQMR-KKDIIVWNAMILGLGMTGH 401



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 14/244 (5%)

Query: 54  PTPLLTNQKAFPKTKLQALD--SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           P P   +  A     + A D    +    ++  NG+   + T   +L  C ++  +  G 
Sbjct: 180 PHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGE 239

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
            + R      + ++  +++  + LY   G + +A +VFD+M ++ A A  W +++ GYA 
Sbjct: 240 TVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA--WGAMVGGYAS 297

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G   +A+ L+  M+ EGV PD +     L AC  LG + +G +    A+R    +D F+
Sbjct: 298 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ----AIRM-VDWDEFL 352

Query: 232 LN-----ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            N     AL+DMYAKCG   +A  VF ++  KD+I +N+M+ G    G    AF +   M
Sbjct: 353 DNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM 412

Query: 287 ILNG 290
             +G
Sbjct: 413 EKSG 416



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+       A  L  C +L A++ G +  R++  +    N  + + L+ +YA  G   EA
Sbjct: 315 GVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEA 374

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF QM  +      WN++I G    G  + A  L  QME+ GV+ +  TF  +L +C 
Sbjct: 375 WVVFQQMRKKDIIV--WNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCT 432

Query: 206 GLGLIRVGEK 215
             GLI+ G +
Sbjct: 433 HTGLIQDGRR 442


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 228/411 (55%), Gaps = 17/411 (4%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + LL LYA  GL+  A +VFD+M + +  +  W +LI+ Y + G+  +A+ +   
Sbjct: 105 NPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVS--WTALITAYMDAGDLREAVHVARN 162

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
               G+ PD FT  RVL ACA +  +  GE V   A + G     FV  A VD+Y KCG+
Sbjct: 163 AFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGE 222

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + KAR VFD++ +KD +++ +M+ GY  +G   EA D+F  M   G  PD  A++  L+ 
Sbjct: 223 MAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSA 282

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----SLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            +  R+GA   G    R V+WD  + N     +LI +Y+K G   +A  +F  M +KD++
Sbjct: 283 CT--RLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDII 340

Query: 360 SWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
            WN++I       H K   A     QME+ GV  +  TF+ LL +C H G ++ G R F 
Sbjct: 341 VWNAMILGLGMTGHEK--TAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 398

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + Y ISPR+EHY C+V+L  RAGL+ EA+ +I + M   A+ V+ GALL  C +H N
Sbjct: 399 NMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLI-DDMPMPANAVILGALLGGCKIHRN 457

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + E    +L  LEP N  N+ +L  IY N GR +D  ++   + ++G+E
Sbjct: 458 AELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 508



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 153/291 (52%), Gaps = 12/291 (4%)

Query: 192 PDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           P   TFP  LK+ + L   +R GE++H  +++     +  VL +L+ +YA+CG + +A+ 
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANASL 307
           VFD + +   +S+ +++T Y+  G L EA  + R    NG  PD    V + +  A  + 
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L  G  V     + G+   + +A + + +Y K G++ +A  +FD M  KD V+W +++  
Sbjct: 188 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGG 247

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM-VEKYGIS 423
           ++ +    EAL  F  M+ +GV PD       LSAC  LG++ +G +   ++  +++  +
Sbjct: 248 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           P +     ++++Y + G   EA+ ++ ++M  +   +VW A++    + G+
Sbjct: 308 PVLG--TALIDMYAKCGSTAEAW-VVFQQMR-KKDIIVWNAMILGLGMTGH 354



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 14/244 (5%)

Query: 54  PTPLLTNQKAFPKTKLQALD--SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           P P   +  A     + A D    +    ++  NG+   + T   +L  C ++  +  G 
Sbjct: 133 PHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGE 192

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
            + R      + ++  +++  + LY   G + +A +VFD+M ++ A A  W +++ GYA 
Sbjct: 193 TVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA--WGAMVGGYAS 250

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G   +A+ L+  M+ EGV PD +     L AC  LG + +G +    A+R    +D F+
Sbjct: 251 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ----AIRM-VDWDEFL 305

Query: 232 LN-----ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            N     AL+DMYAKCG   +A  VF ++  KD+I +N+M+ G    G    AF +   M
Sbjct: 306 DNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM 365

Query: 287 ILNG 290
             +G
Sbjct: 366 EKSG 369



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+       A  L  C +L A++ G +  R++  +    N  + + L+ +YA  G   EA
Sbjct: 268 GVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEA 327

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF QM  +      WN++I G    G  + A  L  QME+ GV+ +  TF  +L +C 
Sbjct: 328 WVVFQQMRKKDIIV--WNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCT 385

Query: 206 GLGLIRVGEK 215
             GLI+ G +
Sbjct: 386 HTGLIQDGRR 395


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 158/491 (32%), Positives = 268/491 (54%), Gaps = 25/491 (5%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGI---TVQTETFASLLETC 101
           TFS     SP+P            L+ L S  Q  E+ +Q  I    V+ E + ++L  C
Sbjct: 52  TFSRQISFSPSP-----------NLKTLCSSGQLKEALLQMAILGREVKFEGYDTILNEC 100

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
              +A+  G ++H  +       +  + ++L+ LY     + +A ++FD+M  +   +  
Sbjct: 101 VSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVS-- 158

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W ++IS Y++ G   +A+ L+ +M     EP+ FTF  +L +C G      G ++H  A+
Sbjct: 159 WTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAI 218

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  +    FV ++L+DMYAK G I  A  VF  +  +D+++  ++++GY   GL  EA  
Sbjct: 219 KRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALK 278

Query: 282 IFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +FR + + G + + V  +S+L   S    L  G QVH  VLR G    + + NSLI +YS
Sbjct: 279 LFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYS 338

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERDGVLPDHLTFV 394
           K G +  A  +FD MP++  +SWN+++  +SK     E L  F+ M E + V PD +T++
Sbjct: 339 KCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYL 398

Query: 395 SLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           ++LS C+H     +G  +F  MV  K GI P + HY C+V+L GRAG ++EA+  I +KM
Sbjct: 399 AVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFI-KKM 457

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            F  +  +WG+LL +C +H +V +G    QKL ELEP+N  N+ +L  +Y +AG+ +D+ 
Sbjct: 458 PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMR 517

Query: 514 RVERMLVDRGL 524
            +  ++ ++ +
Sbjct: 518 NIRDLMQEKAV 528


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 240/441 (54%), Gaps = 13/441 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +    FA++++ C  +K +    +LH  +  N    +  I + L+  Y+    ID+A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F  M         W ++ISGY + G  + A+ L+ QM  EGV P+ FT+  +L A A
Sbjct: 349 FKLFCMMHG-VQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +       ++H   V+  +     V  AL D Y+K GD  +A  +F+ I  KD++++++
Sbjct: 408 AVS----PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSA 463

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRR 321
           ML+GY   G +  A  IF  +   G +P+    SS+L    A  + +  G Q H   ++ 
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 523

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G    LC++++L+ +Y+K G ++ A  +F     +D+VSWNS+I     H    ++L  F
Sbjct: 524 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIF 583

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M    +  D +TF+ ++SAC H G V  G+R F +MV+ Y I P +EHY+CMV+LY R
Sbjct: 584 EEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSR 643

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG++++A  +I  KM F A   +W  LL AC +H NV +GE AA+KL  L+P +   + L
Sbjct: 644 AGMLEKAMDLI-NKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVL 702

Query: 499 LIKIYGNAGRLDDVERVERML 519
           L  IY  AG   +  +V +++
Sbjct: 703 LSNIYATAGNWQERAKVRKLM 723



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/381 (31%), Positives = 203/381 (53%), Gaps = 25/381 (6%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ +Y     +++  +VFD+M  R      W SL++GY + G  E A+ L+ QM+ 
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEM--RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQL 186

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG++P+ FTF  VL   A  G +  G +VH   ++ G     FV N++V+MY+K   +  
Sbjct: 187 EGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSD 246

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A+ VFD + N++ +S+NSM+ G++ +GL +EAF++F  M L G        ++++   AN
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNS 363
              +    Q+H  V++ G ++DL I  +L+V YSK  ++D A  LF  M   ++VVSW +
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366

Query: 364 IIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           II  +    +   A+  F QM R+GV P+H T+ ++L+A A +   ++      V+   Y
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHAL---VVKTNY 423

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
             SP V     + + Y + G  +EA + I E ++ E   V W A+L      G++   E 
Sbjct: 424 ENSPSVG--TALSDSYSKIGDANEA-AKIFELID-EKDIVAWSAMLSGYAQMGDI---EG 476

Query: 481 AAQKLFEL-----EPDNEHNF 496
           A +   +L     EP NE  F
Sbjct: 477 AVKIFLQLAKEGVEP-NEFTF 496



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 215/394 (54%), Gaps = 13/394 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     TFA++L       AVE G+++H ++  + L     + + ++ +Y+   ++ +A
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD M NR A +  WNS+I+G+   G   +A  L+++M  EGV+  Q  F  V+K CA
Sbjct: 248 KAVFDSMENRNAVS--WNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCA 305

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYN 264
            +  +   +++H   ++ G  FD  +  AL+  Y+KC +I  A  +F  + G ++++S+ 
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWT 365

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRIGAQVHGWVLRRGV 323
           ++++GY+ +G    A ++F  M   G  P+    S+IL ANA++    +Q+H  V++   
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP--SQIHALVVKTNY 423

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DHE-ALIYFEQ 380
           E    +  +L   YSK G  ++A  +F+ + +KD+V+W++++  +++  D E A+  F Q
Sbjct: 424 ENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQ 483

Query: 381 MERDGVLPDHLTFVSLLSACAH-LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           + ++GV P+  TF S+L+ACA    SV+ G++  S  + K G S  +   + +V +Y + 
Sbjct: 484 LAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSI-KSGFSNALCVSSALVTMYAKR 542

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G I+ A  +   K + +   V W +++     HG
Sbjct: 543 GNIESANEVF--KRQVDRDLVSWNSMISGYAQHG 574



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 17/332 (5%)

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           L DE  Q     +N   F F  N          + ++A+ L+  +   G   D  +   V
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRND---------QNKEALNLFLGLRRSGSPTDGSSLSCV 98

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           LK C  L    VG++VH   ++ GF  D  V  +LVDMY K   +     VFD +  K++
Sbjct: 99  LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGW 317
           +S+ S+L GY  +GL  +A  +F  M L G  P+P   +++   LA    +  G QVH  
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           V++ G++  + + NS++ +YSK   +  A  +FD M  ++ VSWNS+I     +  D EA
Sbjct: 219 VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA 278

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F +M  +GV      F +++  CA++  +   ++L   ++ K G    +     ++ 
Sbjct: 279 FELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVI-KNGSDFDLNIKTALMV 337

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            Y +   ID+A+ +    M    + V W A++
Sbjct: 338 AYSKCSEIDDAFKLFC-MMHGVQNVVSWTAII 368


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 226/387 (58%), Gaps = 9/387 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A+ VF  + N   F   WN++I GYAE      A   Y QM    VEPD  T+P +LKA 
Sbjct: 71  AYNVFTVIHNPNVFT--WNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAI 128

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +    +R GE +H   +R GF    FV N+L+ +YA CGD   A  VF+ +  +DL+++N
Sbjct: 129 SKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWN 188

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRR 321
           SM+ G+  +G   EA  +FR M + G +PD   + S+L A+A L  L +G +VH ++L+ 
Sbjct: 189 SMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV 248

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G+  +  + NSL+ +Y+K G + +A  +F  M +++ VSW S+I   + +    EAL  F
Sbjct: 249 GLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELF 308

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++ME  G++P  +TFV +L AC+H G +  G   F  M E+ GI PR+EHY CMV+L  R
Sbjct: 309 KEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSR 368

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL+ +AY  I + M  + + V+W  LL AC +HG++ +GE A   L  LEP +  ++ L
Sbjct: 369 AGLVKQAYEYI-QNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVL 427

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +Y +  R  DV+ + R ++  G++
Sbjct: 428 LSNLYASERRWSDVQVIRRSMLKDGVK 454



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 16/290 (5%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T T+  LL+   +   V  G  +H +   N       + + LL +YA  G  + A++VF+
Sbjct: 118 THTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFE 177

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  R   A  WNS+I+G+A  G   +A+ L+ +M  EGVEPD FT   +L A A LG +
Sbjct: 178 LMKERDLVA--WNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGAL 235

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G +VH+  ++ G   +  V N+L+D+YAKCG I +A+ VF  +  ++ +S+ S++ G 
Sbjct: 236 ELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGL 295

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA 330
             +G   EA ++F+ M   G  P  +    +L   S    G    G+   R ++ +  I 
Sbjct: 296 AVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACS--HCGMLDEGFEYFRRMKEECGII 353

Query: 331 ------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSI-----IHAH 368
                   ++ + S+ G + QA     +MP Q + V W ++     IH H
Sbjct: 354 PRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E SV+ G+     T  SLL    +L A+E G ++H  +    L KN  +++ LL LYA  
Sbjct: 209 EMSVE-GVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKC 267

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G I EA +VF +MS R A +  W SLI G A  G  E+A+ L+ +ME +G+ P + TF  
Sbjct: 268 GAIREAQRVFSEMSERNAVS--WTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVG 325

Query: 200 VLKACAGLGLIRVG 213
           VL AC+  G++  G
Sbjct: 326 VLYACSHCGMLDEG 339


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 261/477 (54%), Gaps = 30/477 (6%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLL 133
           +I D+   V  G+     TFAS L  C QL+ +  G ++H  ++  + L  N  ++S L+
Sbjct: 258 VIYDM---VARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALV 314

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEP 192
            +YA+   +  A +VFD +         WN+++ GYA+ G  E+A+ L+ +ME E GV P
Sbjct: 315 DMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVP 374

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
            + T   VL ACA        E VH   ++ G   + FV NAL+D+YA+ GD+  AR +F
Sbjct: 375 SETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIF 434

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-------------LNGFDPDPV--- 296
             I  +D++S+N+++TG +  G + +AF + R M              + G D +PV   
Sbjct: 435 AAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPN 494

Query: 297 --AISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
              + ++L   ++L     G ++HG+ +R  ++ D+ + ++L+ +Y+K G L  +  +FD
Sbjct: 495 NVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFD 554

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVK 407
            +P+++V++WN +I A   H    EA+  F++M   +   P+ +TF++ L+AC+H G V 
Sbjct: 555 RLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVD 614

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G  LF  M   +G+ P  + +AC V++ GRAG +DEAYS+I      E     W + L 
Sbjct: 615 RGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLG 674

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           AC LH NV +GE AA++LF+LEPD   ++ LL  IY  AG  +    V   +  RG+
Sbjct: 675 ACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGV 731



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 134/499 (26%), Positives = 233/499 (46%), Gaps = 64/499 (12%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQL-KAVEHGIKLHRLIPTN--LLRKN 125
           L ALD+    L   +  G  + + T  S+L  C  L + +  G + H     N  L    
Sbjct: 144 LPALDA----LRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDE 199

Query: 126 KGISSKLLRLYATFGLIDEAHQVF---DQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           +   + LL +YA  GL+D+A  +F   D   +       WN+++S   + G   +AI + 
Sbjct: 200 RFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVI 259

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAK 241
           + M   GV PD  TF   L AC+ L ++ +G ++H   ++      + FV +ALVDMYA 
Sbjct: 260 YDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYAS 319

Query: 242 CGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAI 298
              +  AR VFD +  G++ L  +N+M+ GY   G+  EA ++F  M    G  P    I
Sbjct: 320 HERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTI 379

Query: 299 SSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           + +L   A +        VHG+VL+RG+  +  + N+L+ +Y++ G ++ A W+F  +  
Sbjct: 380 AGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEP 439

Query: 356 KDVVSWNSIIHA---HSKDHEALIYFEQMERDG------------------VLPDHLTFV 394
           +DVVSWN++I         H+A     +M++ G                  V+P+++T +
Sbjct: 440 RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLM 499

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           +LL  CA L +   G+ +    + ++ +   +   + +V++Y + G +  A S  V    
Sbjct: 500 TLLPGCAMLAAPAKGKEIHGYAM-RHALDSDIAVGSALVDMYAKCGCL--ALSRAVFDRL 556

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLF-------ELEPDNEHNFELLIKIYGNAG 507
            + + + W  L+ A  +HG   +G+ A   LF       E +P NE  F   +    ++G
Sbjct: 557 PKRNVITWNVLIMAYGMHG---LGDEAI-ALFDRMVMSNEAKP-NEVTFIAALAACSHSG 611

Query: 508 RLDDVERVERMLVDRGLEF 526
                      +VDRG+E 
Sbjct: 612 -----------MVDRGMEL 619



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 196/403 (48%), Gaps = 35/403 (8%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRK-NKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           A+ L +   ++++ HG  L R    +LL      +++ LL  YA  G +  A  +F+ M 
Sbjct: 69  AAALRSLIAVRSI-HGAALRR----DLLHGFTPAVANALLTAYARCGDLTAALALFNAMP 123

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRV 212
           +R A  F  NSLI+       +  A+     M  EG     FT   VL AC+ L   +R+
Sbjct: 124 SRDAVTF--NSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRL 181

Query: 213 GEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD-----LISYNS 265
           G + H  A++ GF  G + F  NAL+ MYA+ G +  A+ +F  +   D     ++++N+
Sbjct: 182 GREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNT 241

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M++  +  G   EA ++   M+  G  PD +  +S L   S   +L +G ++H +VL+  
Sbjct: 242 MVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK-- 299

Query: 323 VEWDLC----IANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSK---DHE 373
            + DL     +A++L+ +Y+   ++  A  +FD +P   + +  WN+++  +++   D E
Sbjct: 300 -DSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 374 ALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           AL  F +ME + GV+P   T   +L ACA       G+      V K G++        +
Sbjct: 359 ALELFARMEAEAGVVPSETTIAGVLPACAR-SETFAGKEAVHGYVLKRGMADNPFVQNAL 417

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           ++LY R G + EA   I   +E     V W  L+  C + G++
Sbjct: 418 MDLYARLGDM-EAARWIFAAIE-PRDVVSWNTLITGCVVQGHI 458



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 19/276 (6%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKART 250
           D F  P   K+ A L  +     +H  A+R     GF   V NAL+  YA+CGD+  A  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL--- 307
           +F+ + ++D +++NS++         + A D  R M+L G       + S+L   S    
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 308 -LRIGAQVHGWVLRRG-VEWDLCIA-NSLIVVYSKDGKLDQACWLFDHM-----PQKDVV 359
            LR+G + H + L+ G ++ D   A N+L+ +Y++ G +D A  LF  +     P   VV
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 360 SWNSIIH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WN+++       +  EA+     M   GV PD +TF S L AC+ L  + +G  + + +
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297

Query: 417 VEKYGISPRVEHYACMVNLYG---RAGLIDEAYSMI 449
           ++   ++      + +V++Y    R G+    + M+
Sbjct: 298 LKDSDLAANSFVASALVDMYASHERVGVARRVFDMV 333


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 248/449 (55%), Gaps = 13/449 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T +S+L+ C    A + G ++H  +       +  I   L+ +YA    +D+
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD M +R       N+LISG +  G +++A++L++++ +EG+  ++ T   VLK+ 
Sbjct: 357 ARKVFDWMFHRDLIL--CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L       +VH  AV+ GF FD  V+N L+D Y KC  +  A  VF+   + D+I+  
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM+T          A  +F  M+  G +PDP  +SS+L   A+ S    G QVH  +++R
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALI 376
               D    N+L+  Y+K G ++ A   F  +P++ VVSW+++I     H H K   AL 
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK--RALE 592

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M  +G+ P+H+T  S+L AC H G V   +R F+ M E +GI    EHY+CM++L 
Sbjct: 593 LFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLL 652

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +D+A  + V  M F+A+  +WGALL A  +H +  +G+ AA+KLF LEP+     
Sbjct: 653 GRAGKLDDAMEL-VNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTH 711

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL   Y +AG  ++V +V +++ D  ++
Sbjct: 712 VLLANTYASAGMWNEVAKVRKLMKDSNIK 740



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 175/316 (55%), Gaps = 9/316 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM-SNRTAFAFPWNSLISG 168
           G ++H +        +  +++ L+ +Y  FG +D+A +VF++  S R A +  WN L+S 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS--WNGLMSA 176

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y +  +  DAI ++ +M   G++P +F F  V+ AC G   I  G +VH   VR G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            F  NALVDMY K G +  A  +F+++ + D++S+N++++G + +G    A ++   M  
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G  P+   +SSIL   + A    +G Q+HG++++   + D  I   L+ +Y+K+  LD 
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 346 ACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD M  +D++  N++I   +H   H EAL  F ++ ++G+  +  T  ++L + A 
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 403 LGSVKVGERLFSVMVE 418
           L +     ++ ++ V+
Sbjct: 417 LEAASTTRQVHALAVK 432



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A + FD++ +    +  W+SL++ Y+  G    AI  +  M  EGV  ++F  P VLK  
Sbjct: 56  ARRFFDEIPDPCHVS--WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCV 113

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISY 263
                 R+G +VH  A+  GFG D FV NALV MY   G +  AR VF+   + ++ +S+
Sbjct: 114 PD---ARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSW 170

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N +++ Y+ +    +A  +F  M+ +G  P     S ++   +  R    G QVH  V+R
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR 230

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G + D+  AN+L+ +Y K G++D A  +F+ MP  DVVSWN++I     +  DH A+  
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIEL 290

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             QM+  G++P+  T  S+L AC+  G+  +G ++   M++    S        +V++Y 
Sbjct: 291 LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYA 349

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +   +D+A    V    F    ++  AL+  C  HG
Sbjct: 350 KNHFLDDARK--VFDWMFHRDLILCNALISGCS-HG 382



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            HL A     G      N L+  Y+KC     AR  FD I +   +S++S++T Y ++GL
Sbjct: 24  AHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
              A   F GM   G   +  A+  +L      R+GAQVH   +  G   D+ +AN+L+ 
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVA 143

Query: 336 VYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHL 391
           +Y   G +D A  +F+    +++ VSWN ++ A+ K+ +   A+  F +M   G+ P   
Sbjct: 144 MYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEF 203

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            F  +++AC    +++ G ++ + MV + G    V     +V++Y + G +D A S+I E
Sbjct: 204 GFSCVVNACTGSRNIEAGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRVDIA-SVIFE 261

Query: 452 KMEFEASPVVWGALLYACYLHGN 474
           KM  ++  V W AL+  C L+G+
Sbjct: 262 KMP-DSDVVSWNALISGCVLNGH 283



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 7/289 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ V   T A++L++   L+A     ++H L        +  + + L+  Y     + 
Sbjct: 397 KEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLS 456

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A++VF++ S+    A    S+I+  ++    E AI L+ +M  +G+EPD F    +L A
Sbjct: 457 DANRVFEECSSGDIIA--CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L     G++VH   ++  F  D F  NALV  YAKCG I  A   F  +  + ++S+
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--ANASLLRIGAQVHGWVLRR 321
           ++M+ G   HG    A ++F  M+  G +P+ + ++S+L   N + L   A+ +   ++ 
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634

Query: 322 --GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             G++      + +I +  + GKLD A  L + MP Q +   W +++ A
Sbjct: 635 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+       +SLL  C  L A E G ++H  +       +    + L+  YA  G I
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F  +  R   +  W+++I G A+ G  + A+ L+ +M +EG+ P+  T   VL 
Sbjct: 557 EDAELAFSSLPERGVVS--WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFD 228
           AC   GL+   ++ + ++++  FG D
Sbjct: 615 ACNHAGLVDEAKR-YFNSMKEMFGID 639


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 248/449 (55%), Gaps = 13/449 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T +S+L+ C    A + G ++H  +       +  I   L+ +YA    +D+
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD M +R       N+LISG +  G +++A++L++++ +EG+  ++ T   VLK+ 
Sbjct: 357 ARKVFDWMFHRDLIL--CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L       +VH  AV+ GF FD  V+N L+D Y KC  +  A  VF+   + D+I+  
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM+T          A  +F  M+  G +PDP  +SS+L   A+ S    G QVH  +++R
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALI 376
               D    N+L+  Y+K G ++ A   F  +P++ VVSW+++I     H H K   AL 
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK--RALE 592

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M  +G+ P+H+T  S+L AC H G V   +R F+ M E +GI    EHY+CM++L 
Sbjct: 593 LFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLL 652

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +D+A  + V  M F+A+  +WGALL A  +H +  +G+ AA+KLF LEP+     
Sbjct: 653 GRAGKLDDAMEL-VNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTH 711

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL   Y +AG  ++V +V +++ D  ++
Sbjct: 712 VLLANTYASAGMWNEVAKVRKLMKDSNIK 740



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 174/336 (51%), Gaps = 16/336 (4%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD++ +    +  W+SL++ Y+  G    AI  +  M  EGV  ++F  P VLK  
Sbjct: 56  ARRVFDEIPDPCHVS--WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCV 113

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISY 263
                 R+G +VH  A+  GFG D FV NALV MY   G +  AR VF+   + ++ +S+
Sbjct: 114 PD---ARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSW 170

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           N +++ Y+ +    +A  +F  M+ +G  P     S ++   +  R    G QVH  V+R
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR 230

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G + D+  AN+L+ +Y K G++D A  +F+ MP  DVVSWN++I     +  DH A+  
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIEL 290

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             QM+  G++P+  T  S+L AC+  G+  +G ++   M++    S        +V++Y 
Sbjct: 291 LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYA 349

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +   +D+A    V    F    ++  AL+  C  HG
Sbjct: 350 KNHFLDDARK--VFDWMFHRDLILCNALISGCS-HG 382



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 175/316 (55%), Gaps = 9/316 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM-SNRTAFAFPWNSLISG 168
           G ++H +        +  +++ L+ +Y  FG +D+A +VF++  S R A +  WN L+S 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS--WNGLMSA 176

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y +  +  DAI ++ +M   G++P +F F  V+ AC G   I  G +VH   VR G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            F  NALVDMY K G +  A  +F+++ + D++S+N++++G + +G    A ++   M  
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G  P+   +SSIL   + A    +G Q+HG++++   + D  I   L+ +Y+K+  LD 
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 346 ACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD M  +D++  N++I   +H   H EAL  F ++ ++G+  +  T  ++L + A 
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 403 LGSVKVGERLFSVMVE 418
           L +     ++ ++ V+
Sbjct: 417 LEAASTTRQVHALAVK 432



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 135/263 (51%), Gaps = 7/263 (2%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            HL A     G      N L+  Y+KC     AR VFD I +   +S++S++T Y ++GL
Sbjct: 24  AHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
              A   F GM   G   +  A+  +L      R+GAQVH   +  G   D+ +AN+L+ 
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVA 143

Query: 336 VYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHL 391
           +Y   G +D A  +F+    +++ VSWN ++ A+ K+ +   A+  F +M   G+ P   
Sbjct: 144 MYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEF 203

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            F  +++AC    +++ G ++ + MV + G    V     +V++Y + G +D A S+I E
Sbjct: 204 GFSCVVNACTGSRNIEAGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRVDIA-SVIFE 261

Query: 452 KMEFEASPVVWGALLYACYLHGN 474
           KM  ++  V W AL+  C L+G+
Sbjct: 262 KMP-DSDVVSWNALISGCVLNGH 283



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 7/289 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ V   T A++L++   L+A     ++H L        +  + + L+  Y     + 
Sbjct: 397 KEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLS 456

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A++VF++ S+    A    S+I+  ++    E AI L+ +M  +G+EPD F    +L A
Sbjct: 457 DANRVFEECSSGDIIA--CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L     G++VH   ++  F  D F  NALV  YAKCG I  A   F  +  + ++S+
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--ANASLLRIGAQVHGWVLRR 321
           ++M+ G   HG    A ++F  M+  G +P+ + ++S+L   N + L   A+ +   ++ 
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634

Query: 322 --GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             G++      + +I +  + GKLD A  L + MP Q +   W +++ A
Sbjct: 635 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+       +SLL  C  L A E G ++H  +       +    + L+  YA  G I
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F  +  R   +  W+++I G A+ G  + A+ L+ +M +EG+ P+  T   VL 
Sbjct: 557 EDAELAFSSLPERGVVS--WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFD 228
           AC   GL+   ++ + ++++  FG D
Sbjct: 615 ACNHAGLVDEAKR-YFNSMKEMFGID 639


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 260/474 (54%), Gaps = 28/474 (5%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNK 126
           +L    +++Q L +  Q        T+ SLL    + +       +HR +  + + R + 
Sbjct: 232 RLAQATALLQGLPAPTQR-------TYESLLLAAARARDTALAAAVHRRLEADPVFRSDP 284

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            +S++L+  YA    +  A QVFD+   +  F   WN+++   A     E+A+     M 
Sbjct: 285 FLSTRLIEAYAALSALPAARQVFDEAPVKNIFV--WNAMLKALALADHGEEALTCLADMG 342

Query: 187 EEGVEPDQFTFPRVLKACAGLGL------IRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
             GV  D +++   LKAC            RV E +H  A+R G+G    V   L+D YA
Sbjct: 343 RLGVPVDSYSYAHGLKACIAASASHLPASARVRE-MHAHAIRRGYGLHTHVATTLIDCYA 401

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD--PDPVAI 298
           K G +  A  VF  + +++L+S+++M+  Y  +    +A  IF+ M+ +  D  P+ + I
Sbjct: 402 KLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITI 461

Query: 299 SSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-P 354
            S+L   A  + L  G  +H ++LRRG +  + + N+L+ +Y K G L+   ++F+ +  
Sbjct: 462 VSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGR 521

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +++VVSWNS+I     H    E+L  FE+M  +G+ P+ +TFVS+L AC+H+G V+ G++
Sbjct: 522 RRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKK 581

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           LF  MVE Y ++PR EHYACMV+L GRAG +DEA  +I + M  + SP VWG+LL AC +
Sbjct: 582 LFESMVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELI-QSMRIQPSPQVWGSLLGACRI 639

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           HG+V   E A   LF+LEP N  N+ LL  IY  A   + V+ ++ +L +  LE
Sbjct: 640 HGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALE 693


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/404 (36%), Positives = 232/404 (57%), Gaps = 9/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +++ +L  Y   G I  A  VFD M  + + +  WN++I GYA+ G+  +A+AL+ +M E
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVS--WNAMIDGYAQNGDSREALALFNRMVE 255

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EGV+    +    L+AC  LG +  G +VH   VR G   +  V+NAL+ MY+KC  +  
Sbjct: 256 EGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDL 315

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LAN 304
           A  VFD +  +  +S+N+M+ G   +G   +A  +F  M L    PD   + S+   LA+
Sbjct: 316 ASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD 375

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S       +HG+ +R  ++ D+ +  +LI +Y+K G+++ A  LF+   ++ V++WN++
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAM 435

Query: 365 IH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           IH   +H     A+  FE+M+  G++P+  TF+S+LSAC+H G V  G   F+ M E YG
Sbjct: 436 IHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P +EHY  MV+L GRAG +DEA++ I +KM  +    V+GA+L AC LH NV + E +
Sbjct: 496 LEPGMEHYGTMVDLLGRAGKLDEAWAFI-QKMPMDPGLSVYGAMLGACKLHKNVELAEES 554

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AQK+FEL P       LL  IY NA    DV RV   +   GL+
Sbjct: 555 AQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQ 598



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 228/480 (47%), Gaps = 56/480 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+ C     +  G  +H  +    +      ++ L  +YA      +A +VFD+M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIR 211
             R   A  WN+L++GYA  G    A+ +  +M EEEG  PD  T   VL ACA    + 
Sbjct: 121 PVRDRVA--WNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALA 178

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
              + H  A+R G      V  A++D Y KCGDI  AR VFD +  K+ +S+N+M+ GY 
Sbjct: 179 ACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   EA  +F  M+  G D   V++ + L        L  G +VH  ++R G++ ++ 
Sbjct: 239 QNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVS 298

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + N+LI +YSK  ++D A  +FD + ++  VSWN++I   +++    +A+  F +M+ + 
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358

Query: 386 VLPDHLTFVSLLSACA------------------HL-----------------GSVKVGE 410
           V PD  T VS++ A A                  HL                 G V +  
Sbjct: 359 VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYA 468
            LF+   E++ I+     +  M++ YG  G    A  +  E       P    + ++L A
Sbjct: 419 ILFNSARERHVIT-----WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 469 CYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
           C   G V  G    T+ ++ + LEP  EH +  ++ + G AG+LD+    +++M +D GL
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEH-YGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 155/303 (51%), Gaps = 10/303 (3%)

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           A+A +  M   G  P   TF  +LK CA  G +  G  VH      G   +     AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD-IFRGMILNGFDPDPV 296
           MYAKC     AR VFDR+  +D +++N+++ GY  +GL   A + + R     G  PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            + S+L   ANA  L    + H + +R G+E  + +A +++  Y K G +  A  +FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 354 PQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           P K+ VSWN++I  ++++    EAL  F +M  +GV    ++ ++ L AC  LG +  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           R+  ++V + G+   V     ++ +Y +   +D A S + ++++   + V W A++  C 
Sbjct: 283 RVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLA-SHVFDELD-RRTQVSWNAMILGCA 339

Query: 471 LHG 473
            +G
Sbjct: 340 QNG 342



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 145/276 (52%), Gaps = 6/276 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+ V   +  + L+ C +L  ++ G+++H L+    L  N  + + L+ +Y+    +
Sbjct: 254 VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRV 313

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A  VFD++  RT  +  WN++I G A+ G  EDA+ L+ +M+ E V+PD FT   V+ 
Sbjct: 314 DLASHVFDELDRRTQVS--WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A A +        +H  ++R     D +VL AL+DMYAKCG +  AR +F+    + +I+
Sbjct: 372 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVIT 431

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+M+ GY  HG    A ++F  M   G  P+     S+L   ++A L+  G +    + 
Sbjct: 432 WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMK 491

Query: 320 RR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
              G+E  +    +++ +  + GKLD+A      MP
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMP 527


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 250/431 (58%), Gaps = 11/431 (2%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           SLL+ C + +    G   H  +    L  +   S+ L+ +Y+  GLI  A +VFD++  R
Sbjct: 3   SLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPER 62

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           +  +  WN +I    + GE E AI ++ +M+ EG    +FT   V+ ACA  G +    +
Sbjct: 63  SMVS--WNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQ 120

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H  A++     D FV  AL+D+YAKCG I  A  VF+ +  ++ ++++S++ G++ + L
Sbjct: 121 LHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNEL 180

Query: 276 LVEAFDIF-RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             E   +F RG  + G + +   ISS++   A  + L  G QVH  V R G   +  +A+
Sbjct: 181 YEEGLVLFARGKEM-GLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVAS 239

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLP 388
           +L+ +Y+K G +++A  LF ++ +K+VV WN+II     H+   E +  FE+M++ G+ P
Sbjct: 240 ALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQP 299

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +T+V++LSAC H+G V  G   F +M  ++ +SP V HY+CMV++ GR GL+ EA+ +
Sbjct: 300 DEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHEL 359

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           +  KM F A+  +WG+LL +C +HGN+ + E AA+ LFE+EPD   N+ LL   Y  + +
Sbjct: 360 MT-KMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKK 418

Query: 509 LDDVERVERML 519
            ++  +  + L
Sbjct: 419 WEEAAKARKSL 429



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 117/211 (55%), Gaps = 2/211 (0%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S++  C     V    +LH      ++  +  + + L+ +YA  G I++A  VF+ M
Sbjct: 101 TVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGM 160

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      W+S+++G+ +   YE+ + L+ + +E G+E +QF    V++ACAGL  +  
Sbjct: 161 PERNDVT--WSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIE 218

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH    R GFG + FV +ALVDMYAKCG I +A  +F  I  K+++ +N++++G+  
Sbjct: 219 GRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAK 278

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
           H    E  ++F  M   G  PD V   ++L+
Sbjct: 279 HACSSEVMNLFEEMQQTGMQPDEVTYVAVLS 309


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/404 (36%), Positives = 232/404 (57%), Gaps = 9/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +++ +L  Y   G I  A  VFD M  + + +  WN++I GYA+ G+  +A+AL+ +M E
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVS--WNAMIDGYAQNGDSREALALFNRMVE 255

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EGV+    +    L+AC  LG +  G +VH   VR G   +  V+NAL+ MY+KC  +  
Sbjct: 256 EGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDL 315

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LAN 304
           A  VFD +  +  +S+N+M+ G   +G   +A  +F  M L    PD   + S+   LA+
Sbjct: 316 ASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD 375

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S       +HG+ +R  ++ D+ +  +LI +Y+K G+++ A  LF+   ++ V++WN++
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAM 435

Query: 365 IH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           IH   +H     A+  FE+M+  G++P+  TF+S+LSAC+H G V  G   F+ M E YG
Sbjct: 436 IHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P +EHY  MV+L GRAG +DEA++ I +KM  +    V+GA+L AC LH NV + E +
Sbjct: 496 LEPGMEHYGTMVDLLGRAGKLDEAWAFI-QKMPMDPGLSVYGAMLGACKLHKNVELAEES 554

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AQK+FEL P       LL  IY NA    DV RV   +   GL+
Sbjct: 555 AQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQ 598



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 228/480 (47%), Gaps = 56/480 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+ C     +  G  +H  +    +      ++ L  +YA      +A +VFD+M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIR 211
             R   A  WN+L++GYA  G    A+ +  +M EEEG  PD  T   VL ACA    + 
Sbjct: 121 PVRDRVA--WNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALA 178

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
              + H  A+R G      V  A++D Y KCGDI  AR VFD +  K+ +S+N+M+ GY 
Sbjct: 179 ACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G   EA  +F  M+  G D   V++ + L        L  G +VH  ++R G++ ++ 
Sbjct: 239 QNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVS 298

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + N+LI +YSK  ++D A  +FD + ++  VSWN++I   +++    +A+  F +M+ + 
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358

Query: 386 VLPDHLTFVSLLSACA------------------HL-----------------GSVKVGE 410
           V PD  T VS++ A A                  HL                 G V +  
Sbjct: 359 VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYA 468
            LF+   E++ I+     +  M++ YG  G    A  +  E       P    + ++L A
Sbjct: 419 ILFNSARERHVIT-----WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 469 CYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
           C   G V  G    T+ ++ + LEP  EH +  ++ + G AG+LD+    +++M +D GL
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEH-YGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 155/303 (51%), Gaps = 10/303 (3%)

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           A+A +  M   G  P   TF  +LK CA  G +  G  VH      G   +     AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD-IFRGMILNGFDPDPV 296
           MYAKC     AR VFDR+  +D +++N+++ GY  +GL   A + + R     G  PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            + S+L   ANA  L    + H + +R G+E  + +A +++  Y K G +  A  +FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 354 PQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           P K+ VSWN++I  ++++    EAL  F +M  +GV    ++ ++ L AC  LG +  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           R+  ++V + G+   V     ++ +Y +   +D A S + ++++   + V W A++  C 
Sbjct: 283 RVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLA-SHVFDELD-RRTQVSWNAMILGCA 339

Query: 471 LHG 473
            +G
Sbjct: 340 QNG 342



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 145/276 (52%), Gaps = 6/276 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+ V   +  + L+ C +L  ++ G+++H L+    L  N  + + L+ +Y+    +
Sbjct: 254 VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRV 313

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A  VFD++  RT  +  WN++I G A+ G  EDA+ L+ +M+ E V+PD FT   V+ 
Sbjct: 314 DLASHVFDELDRRTQVS--WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A A +        +H  ++R     D +VL AL+DMYAKCG +  AR +F+    + +I+
Sbjct: 372 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVIT 431

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+M+ GY  HG    A ++F  M   G  P+     S+L   ++A L+  G +    + 
Sbjct: 432 WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMK 491

Query: 320 RR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
              G+E  +    +++ +  + GKLD+A      MP
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMP 527


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 244/439 (55%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA +L+ C  L+  + G  +H  +      ++  +   LL LY   G  D+A + F  M
Sbjct: 149 TFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                   PW+ +IS +A+ G+ E A+ ++ QM    V P+QFTF  VL+A A +  + +
Sbjct: 209 PKNDVI--PWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDL 266

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            + +H  A++ G   D FV NAL+  YAKCG I ++  +F+ + +++ +S+N+++  Y+ 
Sbjct: 267 SKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQ 326

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G    A  +F  M+        V  SSIL   A  + L +G QVH    +     D+ +
Sbjct: 327 LGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAV 386

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV 386
            N+LI +Y+K G +  A ++FD +  +D VSWN+II  +S      EA+  F  M+    
Sbjct: 387 GNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKC 446

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD LTFV +LSAC++ G +  G++ F+ M + YGI P +EHY CMV L GR+G +D+A 
Sbjct: 447 KPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAV 506

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E + FE S ++W ALL AC +H +V +G  +AQ++ ELEP +E +  LL  IY  A
Sbjct: 507 KFI-EDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARA 565

Query: 507 GRLDDVERVERMLVDRGLE 525
            R  +V  V + +  +G++
Sbjct: 566 RRWGNVAYVRKHMKRKGVK 584



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 157/307 (51%), Gaps = 9/307 (2%)

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           VFD+M  R   +F   +LI GYA+  ++ +A  L+ ++  EG E + F F  VLK    +
Sbjct: 2   VFDEMPERNTVSFV--TLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSM 59

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
               +G  VH   ++ G+G + F+  AL+D Y+  G +  AR VFD I +KD++S+  M+
Sbjct: 60  EWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVE 324
             Y  +    EA + F  M + GF P+    + +L     L+    G  VH  VL+   E
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH--AHSKDHE-ALIYFEQM 381
            DL +   L+ +Y++ G  D A   F  MP+ DV+ W+ +I   A S   E AL  F QM
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            R  V+P+  TF S+L A A + S+ + + +    + K G+S  V     ++  Y + G 
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHAL-KAGLSTDVFVSNALMACYAKCGC 298

Query: 442 IDEAYSM 448
           I+++  +
Sbjct: 299 IEQSMEL 305


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 236/445 (53%), Gaps = 30/445 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI V   T  S+L  C     +  G  +H L   +   +    S+ LL +Y+  G +D A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF++M  R   +  W S+I+GY   G  + AI L  QME+EGV+ D      +L ACA
Sbjct: 306 LRVFEKMGERNVVS--WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH          + FV NAL+DMYAKCG +  A +VF  +  KD+IS+N+
Sbjct: 364 RSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNT 423

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+                         PD   ++ +L   A+ S L  G ++HG++LR G
Sbjct: 424 MI---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNG 462

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+L+ +Y K G L  A  LFD +P KD+VSW  +I     H   +EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 522

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ PD ++F+S+L AC+H G ++ G R F +M   + I P++EHYACMV+L  R 
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + +AY  + E +       +WGALL  C  + ++ + E  A+++FELEP+N   + LL
Sbjct: 583 GNLSKAYEFM-ETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLL 641

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A + ++V+R+   +  +GL
Sbjct: 642 ANIYAEAEKWEEVKRLREKIGKQGL 666



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 209/461 (45%), Gaps = 83/461 (18%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++T+T+ S+L+ C  LK+   G K+H +I +N +  +  +  KL+  YAT G + E  +V
Sbjct: 97  LETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRV 156

Query: 149 FDQMSNRTAF-------------------------------------------------A 159
           FD M  +  +                                                  
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDV 216

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WNS+ISGY   G  E  + +Y QM   G++ D  T   VL  CA  G + +G+ VH  
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A++  F       N L+DMY+KCGD+  A  VF+++G ++++S+ SM+ GY   G    A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             + + M   G   D VAI+SIL   A +  L  G  VH ++    +E +L + N+L+ +
Sbjct: 337 IKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSL 396
           Y+K G ++ A  +F  M  KD++SWN++I                    + PD  T   +
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIGE------------------LKPDSRTMACV 438

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEA---YSMIVEK 452
           L ACA L +++ G+ +   ++     S R  H A  +V+LY + G++  A   + MI  K
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 453 MEFEASPVVWGALL--YACYLHGNVCMGETAAQKLFELEPD 491
                  V W  ++  Y  + +GN  +      +   +EPD
Sbjct: 497 -----DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 170/364 (46%), Gaps = 79/364 (21%)

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           HQV D           +N+ I  + +LG+ E+A+ L    ++  +E    T+  VL+ CA
Sbjct: 64  HQVTD-----------YNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCA 110

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV-------------- 251
           GL     G+KVH        G DG +   LV  YA CGD+ + R V              
Sbjct: 111 GLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNF 170

Query: 252 -------------------------------------FDRIGNKDLISYNSMLTGYIHHG 274
                                                FD++ ++D+IS+NSM++GY+ +G
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNG 230

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L      I++ M+  G D D   I S+L   AN+  L +G  VH   ++   E  +  +N
Sbjct: 231 LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSN 290

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLP 388
           +L+ +YSK G LD A  +F+ M +++VVSW S+I  +++D     A+   +QME++GV  
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL 350

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH--YAC--MVNLYGRAGLIDE 444
           D +   S+L ACA  GS+  G+      V  Y  +  +E   + C  ++++Y + G ++ 
Sbjct: 351 DVVAITSILHACARSGSLDNGKD-----VHDYIKANNMESNLFVCNALMDMYAKCGSMEA 405

Query: 445 AYSM 448
           A S+
Sbjct: 406 ANSV 409


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 167/513 (32%), Positives = 269/513 (52%), Gaps = 28/513 (5%)

Query: 23  KNKRSRKQRRQKQQQISRNRIT---TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDL 79
           K +R    RR   +  SR+R+      + Y ++            P + ++A+  +  + 
Sbjct: 63  KCRRPADARRVFDRMPSRDRVAWNAVVAGYARN----------GLPSSAMEAVVRMQGE- 111

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
               + G    + T  S+L  C   +A+    ++H       L +   +S+ +L  Y   
Sbjct: 112 ----EGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKC 167

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G ++ A  VFD M  R + +  WN++I GYA+ G   +A+AL+++M +EGV+    +   
Sbjct: 168 GAVEAARAVFDCMPVRNSVS--WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA 225

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
            L+AC  LG +    +VH   VR G   +  V NAL+  YAKC     A  VF+ +GNK 
Sbjct: 226 ALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKK 285

Query: 260 L-ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ---VH 315
             IS+N+M+ G+  +    +A  +F  M L    PD   + S++   + +    Q   +H
Sbjct: 286 TRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIH 345

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDH 372
           G+ +R  ++ D+ +  +LI +YSK G++  A  LFD    + V++WN++IH   +H    
Sbjct: 346 GYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQ 405

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
            A+  FE+M+  G LP+  TF+S+L+AC+H G V  G++ F+ M + YG+ P +EHY  M
Sbjct: 406 AAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTM 465

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+L GRAG +DEA+S I + M  E    V+GA+L AC LH NV + E +AQ +FEL P+ 
Sbjct: 466 VDLLGRAGKLDEAWSFI-KNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEE 524

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
                LL  IY NA    DV RV   +  +GL+
Sbjct: 525 GVYHVLLANIYANASMWKDVARVRTAMEKKGLQ 557



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 214/469 (45%), Gaps = 57/469 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF +LL+ C     +  G  +H  +    L      S+ L  +Y       +A +VFD+M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKACAGLGLI 210
            +R   A  WN++++GYA  G    A+    +M  EE G  PD  T   VL ACA    +
Sbjct: 78  PSRDRVA--WNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARAL 135

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
               +VH  A+R G      V  A++D Y KCG +  AR VFD +  ++ +S+N+M+ GY
Sbjct: 136 HACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGY 195

Query: 271 IHHGLLVEAFDIFRGMILNGFD-PDPVAISSILANASL--LRIGAQVHGWVLRRGVEWDL 327
             +G   EA  +F  M+  G D  D   ++++ A   L  L    +VH  ++R G+  ++
Sbjct: 196 ADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNV 255

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDV-VSWNSIIHAHSKD---HEALIYFEQMER 383
            + N+LI  Y+K  + D A  +F+ +  K   +SWN++I   +++    +A   F +M+ 
Sbjct: 256 SVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQL 315

Query: 384 DGVLPDHLTFVSLLSACAHL-----------------------------------GSVKV 408
           + V PD  T VS++ A A +                                   G V +
Sbjct: 316 ENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSI 375

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALL 466
             RLF    +++ I+     +  M++ YG  G    A  +  E     + P    + ++L
Sbjct: 376 ARRLFDSARDRHVIT-----WNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVL 430

Query: 467 YACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
            AC   G V  G+    + +K + LEP  EH +  ++ + G AG+LD+ 
Sbjct: 431 AACSHAGLVDEGQKYFASMKKDYGLEPGMEH-YGTMVDLLGRAGKLDEA 478


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  261 bits (667), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 252/450 (56%), Gaps = 10/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+     TF+SLL +  + + +E+  ++H  I  + +  +  ++S L+  Y     +
Sbjct: 332 ISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGV 391

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A  +F Q ++     F   ++ISGY   G Y D++ ++  + +  + P++ T   +L 
Sbjct: 392 SMAQNIFSQCNSVDVVVF--TAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILP 449

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
               L  +++G ++H   ++ GF     +  A++DMYAKCG +  A  +F+R+  +D++S
Sbjct: 450 VIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVS 509

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NSM+T          A DIFR M ++G   D V+IS+ L   AN      G  +HG+++
Sbjct: 510 WNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMI 569

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  D+   ++LI +Y+K G L  A  +F  M +K++VSWNSII A   H K  ++L 
Sbjct: 570 KHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLC 629

Query: 377 YFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
            F +M E+ G+ PD +TF+ ++S+C H+G V  G R F  M E YGI P+ EHYAC+V+L
Sbjct: 630 LFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDL 689

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           +GRAG + EAY   V+ M F     VWG LL AC LH NV + E A+ KL +L+P N   
Sbjct: 690 FGRAGRLTEAYE-TVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGY 748

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + L+   + NA   + V +V  ++ +R ++
Sbjct: 749 YVLISNAHANAREWESVTKVRSLMKEREVQ 778



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 252/470 (53%), Gaps = 18/470 (3%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
            K  ALDS+I+       + I+    TF  +L  C     ++ G++LH L+  + +    
Sbjct: 215 AKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEG 274

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            I + LL +Y+  G  D+A ++F  MS   A    WN +ISGY + G  E+++  +++M 
Sbjct: 275 SIKNSLLSMYSKCGRFDDASKLFRMMSR--ADTVTWNCMISGYVQSGLMEESLTFFYEMI 332

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
             GV PD  TF  +L + +    +   +++H   +R     D F+ +AL+D Y KC  + 
Sbjct: 333 SSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVS 392

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            A+ +F +  + D++ + +M++GY+H+GL +++ ++FR ++     P+ + + SIL    
Sbjct: 393 MAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIG 452

Query: 307 L---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +   L++G ++HG+++++G +    I  ++I +Y+K G+++ A  +F+ + ++D+VSWNS
Sbjct: 453 ILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNS 512

Query: 364 IIH--AHSKDHEALI-YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I   A S +  A I  F QM   G+  D ++  + LSACA+L S   G+ +   M+ K+
Sbjct: 513 MITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMI-KH 571

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG----NVC 476
            ++  V   + ++++Y + G +  A  M V K   E + V W +++ AC  HG    ++C
Sbjct: 572 SLASDVYSESTLIDMYAKCGNLKAA--MNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLC 629

Query: 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER-MLVDRGLE 525
           +     +K   + PD +  F  +I    + G +D+  R  R M  D G++
Sbjct: 630 LFHEMVEK-SGIRPD-QITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQ 677



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 196/385 (50%), Gaps = 10/385 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL+ C     +  G ++H  +  N +  +     ++L +YA  G   +  ++F ++  R 
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
           +   PWNS+IS +   G    A+A YF+M   GV PD  TFP ++KAC  L   +  + +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
                  G   + FV ++L+  Y + G I     +FDR+  KD + +N ML GY   G L
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220

Query: 277 VEAFDIFRGMILNGFDPDPV---AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
                 F  M ++   P+ V    + S+ A+  L+ +G Q+HG V+  GV+++  I NSL
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
           + +YSK G+ D A  LF  M + D V+WN +I  + +     E+L +F +M   GVLPD 
Sbjct: 281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TF SLL + +   +++  +++   ++ ++ IS  +   + +++ Y +   +  A ++  
Sbjct: 341 ITFSSLLPSVSKFENLEYCKQIHCYIM-RHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399

Query: 451 EKMEFEASPVVWGALLYACYLHGNV 475
           +    +   VV+ A++   YLH  +
Sbjct: 400 QCNSVDV--VVFTAMISG-YLHNGL 421



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 199/395 (50%), Gaps = 11/395 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++    TF  L++ C  LK  +    L   + +  +  N+ ++S L++ Y  +G ID  
Sbjct: 133 GVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVP 192

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD++  +      WN +++GYA+ G  +  I  +  M  + + P+  TF  VL  CA
Sbjct: 193 SKLFDRVLQKDCVI--WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCA 250

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              LI +G ++H   V  G  F+G + N+L+ MY+KCG    A  +F  +   D +++N 
Sbjct: 251 SKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNC 310

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG 322
           M++GY+  GL+ E+   F  MI +G  PD +  SS+L + S    L    Q+H +++R  
Sbjct: 311 MISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHS 370

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFE 379
           +  D+ + ++LI  Y K   +  A  +F      DVV + ++I  +  +    ++L  F 
Sbjct: 371 ISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFR 430

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + +  + P+ +T VS+L     L ++K+G  L   +++K G   R      ++++Y + 
Sbjct: 431 WLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKC 489

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           G ++ AY  I E++  +   V W +++  C    N
Sbjct: 490 GRMNLAYE-IFERLS-KRDIVSWNSMITRCAQSDN 522


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  261 bits (667), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 145/443 (32%), Positives = 247/443 (55%), Gaps = 18/443 (4%)

Query: 91  TETFASLLETCYQLKAVE----HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           + +  SL+  C  L+ ++    + IK H+  PT L +     +S       T   +D AH
Sbjct: 35  SSSILSLIPKCTSLRELKQIQAYTIKTHQNNPTVLTKLINFCTSN-----PTIASMDHAH 89

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           ++FD++       F  N++  GYA   +   AI L  Q+   G+ PD +TF  +LKACA 
Sbjct: 90  RMFDKIPQPDIVLF--NTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACAR 147

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L  +  G+++H  AV+ G G + +V   L++MY  C D+  AR VFD+IG   +++YN++
Sbjct: 148 LKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAI 207

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGV 323
           +T    +    EA  +FR +  +G  P  V +   L++ +L   L +G  +H +V + G 
Sbjct: 208 ITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGF 267

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           +  + +  +LI +Y+K G LD A  +F  MP++D  +W+++I A   H    +A+    +
Sbjct: 268 DQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLRE 327

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M++  V PD +TF+ +L AC+H G V+ G   F  M  +YGI P ++HY CM++L GRAG
Sbjct: 328 MKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAG 387

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            ++EA   I +++  + +P++W  LL +C  HGNV M +   Q++FEL+  +  ++ +L 
Sbjct: 388 RLEEACKFI-DELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILS 446

Query: 501 KIYGNAGRLDDVERVERMLVDRG 523
            +    GR DDV  + +M+VD+G
Sbjct: 447 NLCARNGRWDDVNHLRKMMVDKG 469



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 9/342 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF+SLL+ C +LKA+E G +LH L     +  N  +   L+ +Y     +D 
Sbjct: 129 SGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDA 188

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD++      A+  N++I+  A      +A+AL+ +++E G++P   T    L +C
Sbjct: 189 ARRVFDKIGEPCVVAY--NAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSC 246

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A LG + +G  +H    + GF     V  AL+DMYAKCG +  A +VF  +  +D  +++
Sbjct: 247 ALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWS 306

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ-VHGWVLR 320
           +M+  Y  HG   +A  + R M      PD +    IL   ++  L+  G +  H     
Sbjct: 307 AMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHE 366

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV-VSWNSIIHAHSKDHEALIYFE 379
            G+   +     +I +  + G+L++AC   D +P K   + W +++ + S      +   
Sbjct: 367 YGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKL 426

Query: 380 QMERDGVLPDHL--TFVSLLSACAHLGSVKVGERLFSVMVEK 419
            ++R   L D     +V L + CA  G       L  +MV+K
Sbjct: 427 VIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDK 468



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 4/193 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+     T    L +C  L A++ G  +H  +  N   +   +++ L+ +YA  G +D
Sbjct: 229 ESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLD 288

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF  M  R   A  W+++I  YA  G    AI++  +M++  V+PD+ TF  +L A
Sbjct: 289 DAVSVFKDMPRRDTQA--WSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYA 346

Query: 204 CAGLGLIRVG-EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL-I 261
           C+  GL+  G E  H     +G          ++D+  + G + +A    D +  K   I
Sbjct: 347 CSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPI 406

Query: 262 SYNSMLTGYIHHG 274
            + ++L+    HG
Sbjct: 407 LWRTLLSSCSSHG 419


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  261 bits (667), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 160/485 (32%), Positives = 263/485 (54%), Gaps = 19/485 (3%)

Query: 54  PTPLLTNQKAFPKTKLQALDS-----IIQDLESSVQNGITVQTETFASLLETCYQLKAVE 108
           P  LL  ++  P T   A        +++DL+      +      + S +  C Q K +E
Sbjct: 9   PNYLLLYRRTRPYTSTAANPVAAASAVLRDLDLLDAGELAPTPRVYRSFITACAQSKNLE 68

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
              K+H  + ++    +  + + L+ +Y     + +A  VFDQM  +   +  W SLI+G
Sbjct: 69  DARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVS--WTSLIAG 126

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           YA+     +AI L   M +   +P+ FTF  +LKA         G ++H  AV+ G+  D
Sbjct: 127 YAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHED 186

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            +V +AL+DMYA+CG +  A  VFD++ +K+ +S+N++++G+   G    A   F  M+ 
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLR 246

Query: 289 NGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
           NGF+      SS+   +S+ R+GA      VH  V++   +    + N+L+ +Y+K G +
Sbjct: 247 NGFEATHFTYSSVF--SSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSM 304

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
             A  +FD +  KD+V+WNS++ A ++     EA+ +FE+M + GV  + +TF+ +L+AC
Sbjct: 305 IDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTAC 364

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G VK G+R F +M E Y + P ++HY  +V L GRAGL++ A   I  KM  E +  
Sbjct: 365 SHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFIF-KMPMEPTAA 422

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           VWGALL AC +H N  +G+ AA  +FEL+PD+     LL  IY + G+ D   RV  M+ 
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMK 482

Query: 521 DRGLE 525
             G++
Sbjct: 483 TTGVK 487


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  261 bits (667), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 151/451 (33%), Positives = 256/451 (56%), Gaps = 13/451 (2%)

Query: 84   QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            Q  +   + T ++++  C      ++G  +H  +    ++    I S LL LY+  G   
Sbjct: 865  QKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDT 924

Query: 144  EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVL 201
            +A+ VF  M  +   A  W SLISG  + G++++A+ ++  M  +++ ++PD      V+
Sbjct: 925  DAYLVFKSMEEKDMVA--WGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVI 982

Query: 202  KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
             ACAGL  +  G +VH   ++ G   + FV ++L+D+Y+KCG    A  VF  +  ++++
Sbjct: 983  NACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIV 1042

Query: 262  SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGW 317
            ++NSM++ Y  + L   + ++F  M+  G  PD V+I+S+L    + ASLL+ G  +HG+
Sbjct: 1043 AWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLK-GKSLHGY 1101

Query: 318  VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEA 374
             LR G+  D  + N+LI +Y K G    A  +F  M  K +++WN +I+   +H     A
Sbjct: 1102 TLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTA 1161

Query: 375  LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            L  F+++++ G  PD +TF+SL+SAC H G V+ G+  F +M + YGI P++EHYA MV+
Sbjct: 1162 LSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVD 1221

Query: 435  LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
            L GRAG ++EAYS I + M  EA   +W  LL A   H NV +G  +A+KL  +EP+   
Sbjct: 1222 LLGRAGRLEEAYSFI-KAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGS 1280

Query: 495  NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             +  LI +Y  AG  ++  ++   + +RGL+
Sbjct: 1281 TYVQLINLYMEAGLKNEAAKLLGEMKERGLQ 1311



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 222/455 (48%), Gaps = 21/455 (4%)

Query: 84   QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             N + + + +F   L  C Q +    G ++H  +    L  +  +S+ LL +Y+  G++ 
Sbjct: 764  SNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVG 823

Query: 144  EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            EA  VF  + ++      WN++++ Y E      A+ L+  M ++ V PD FT   V+  
Sbjct: 824  EAETVFSCVVDKRLEI--WNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISC 881

Query: 204  CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            C+  GL   G+ VH +  +        + +AL+ +Y+KCG    A  VF  +  KD++++
Sbjct: 882  CSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAW 941

Query: 264  NSMLTGYIHHGLLVEAFDIFRGMI--LNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
             S+++G   +G   EA  +F  M    +   PD   ++S++   A    L  G QVHG +
Sbjct: 942  GSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSM 1001

Query: 319  LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
            ++ G   ++ + +SLI +YSK G  + A  +F  M  +++V+WNS+I  +S+++    ++
Sbjct: 1002 IKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSI 1061

Query: 376  IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
              F  M   G+ PD ++  S+L A +   S+  G+ L    + + GI         ++++
Sbjct: 1062 ELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTL-RLGIPSDTHLKNALIDM 1120

Query: 436  YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL----EPD 491
            Y + G    A + I +KM+ + S + W  ++Y    HG+     TA     EL    E  
Sbjct: 1121 YVKCGFSKYAEN-IFKKMQHK-SLITWNLMIYGYGSHGDC---RTALSLFDELKKAGETP 1175

Query: 492  NEHNFELLIKIYGNAGRLDDVER-VERMLVDRGLE 525
            ++  F  LI    ++G +++ +   E M  D G+E
Sbjct: 1176 DDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIE 1210



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 189/376 (50%), Gaps = 13/376 (3%)

Query: 108  EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
            E G ++H  +  N L  +  + + L+ +Y  FGL  +A +VF ++ +++     WN +I 
Sbjct: 686  EDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVL-WNVMIV 744

Query: 168  GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
            G+      E ++ LY   +   V+    +F   L AC+       G ++H D V+ G   
Sbjct: 745  GFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDN 804

Query: 228  DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
            D +V  +L+ MY+KCG + +A TVF  + +K L  +N+M+  Y+ +     A ++F  M 
Sbjct: 805  DPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMR 864

Query: 288  LNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
                 PD   +S++++  S+  +   G  VH  + +R ++    I ++L+ +YSK G   
Sbjct: 865  QKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDT 924

Query: 345  QACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM--ERDGVLPDHLTFVSLLSA 399
             A  +F  M +KD+V+W S+I    K+    EAL  F  M  + D + PD     S+++A
Sbjct: 925  DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINA 984

Query: 400  CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
            CA L ++  G ++   M+ K G    V   + +++LY + GL + A   +   M  E + 
Sbjct: 985  CAGLEALSFGLQVHGSMI-KTGQVLNVFVGSSLIDLYSKCGLPEMALK-VFTSMRPE-NI 1041

Query: 460  VVWGALLYACYLHGNV 475
            V W +++ +CY   N+
Sbjct: 1042 VAWNSMI-SCYSRNNL 1056



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 155/326 (47%), Gaps = 28/326 (8%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEP---DQFTFPRVLKACAGLGLIRVGEKVHLD 219
           NS I    + GEY  A+ LY   + +G  P     FTFP +LKAC+ L  +  G+ +H  
Sbjct: 529 NSGIRALIQKGEYLQALHLY--TKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGS 586

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD-----RIGNKDLISYNSMLTGYIHHG 274
            +  G+ +D F+  +LV+MY KCG +  A  VFD      +  +D+   NSM+ GY    
Sbjct: 587 IIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFR 646

Query: 275 LLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRI--GAQVHGWVLRRGVEWDLCI 329
              E    FR M++ G  PD  ++S   S+L      R   G Q+HG++LR  ++ D  +
Sbjct: 647 RFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFL 706

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
             +LI +Y K G    A  +F  +  K +VV WN +I           +L  +   + + 
Sbjct: 707 KTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNS 766

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V     +F   L AC+   +   G ++   +V K G+         ++++Y + G++ EA
Sbjct: 767 VKLVSTSFTGALGACSQSENSAFGRQIHCDVV-KMGLDNDPYVSTSLLSMYSKCGMVGEA 825

Query: 446 ---YSMIVEKMEFEASPVVWGALLYA 468
              +S +V+K   E    +W A++ A
Sbjct: 826 ETVFSCVVDK-RLE----IWNAMVAA 846


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 248/439 (56%), Gaps = 13/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   LL+ C + +++  G   H L     L  +    + L+ LY   G  D A +VFD M
Sbjct: 58  TLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAM 117

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R+  +  WN++I+GY    E  +A+ L+ +M  EG +  +FT    L ACA    I  
Sbjct: 118 SVRSIIS--WNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIE 175

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            +++H  A++       FV  A +D+YAKC  I  A  VF+ +  K  ++++S+  G++ 
Sbjct: 176 CKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQ 235

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
           +GL  E   +F+     G       +SSIL+  + L +   G QVH  +++ G   +L +
Sbjct: 236 NGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFV 295

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERD 384
           A SL+ VY+K G+++++  +F  M +K+VV WN++I     HAHS   EA+I FE+M++ 
Sbjct: 296 ATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSW--EAMILFEKMQQV 353

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ P+ +T++S+LSAC+H G V+ G   F++++      P V HY+CMV++ GR+G  DE
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDE 413

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A+ ++ +KM FE +  +WG+LL +  +H N+ +   AA++LF LEP+N  N  LL  +Y 
Sbjct: 414 AWKLL-DKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYA 472

Query: 505 NAGRLDDVERVERMLVDRG 523
            +G  ++V    + L D G
Sbjct: 473 ASGNWENVVVARKYLRDSG 491



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 151/288 (52%), Gaps = 9/288 (3%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D FT   +L+ CA    + VG+  H  A+ FG   D    N L+++Y KCG    AR VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI- 310
           D +  + +IS+N+M+ GY H+   VEA  +F  M   G       +SS L A A+   I 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 311 -GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
              Q+H   ++  ++    +  + + VY+K   +  ACW+F++MP+K  V+W+S+     
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           ++    E L  F+  +R+G+     T  S+LS CA L  +  G ++ +V+V K+G    +
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIV-KHGFHRNL 293

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
                +V++Y + G I+++Y +  + ME E + V+W A++ +   H +
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFAD-ME-EKNVVLWNAMIASFSRHAH 339



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 10/308 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G  +   T +S L  C    A+    +LH +     L  +  + +  L +YA   +I 
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIK 209

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF+ M  +T+    W+SL +G+ + G +E+ + L+   + EG++  +FT   +L  
Sbjct: 210 DACWVFENMPEKTSVT--WSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILST 267

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L LI  G +VH   V+ GF  + FV  +LVD+YAKCG I K+  VF  +  K+++ +
Sbjct: 268 CASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLW 327

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR 320
           N+M+  +  H    EA  +F  M   G  P+ V   SIL+  S   L+  G      +L 
Sbjct: 328 NAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLS 387

Query: 321 -RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA---HSKDHEAL 375
            R  E ++   + ++ V  + GK D+A  L D MP +   S W S++ +   H     A 
Sbjct: 388 DRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLAR 447

Query: 376 IYFEQMER 383
           I  EQ+ R
Sbjct: 448 IAAEQLFR 455



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 89/168 (52%), Gaps = 4/168 (2%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           F + P+ +     +    F +  L   + ++   +S+ + G+ +   T +S+L TC  L 
Sbjct: 215 FENMPEKTSVTWSSLFAGFVQNGLH--EEVLCLFQSTQREGMQLTEFTVSSILSTCASLA 272

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
            +  G ++H +I  +   +N  +++ L+ +YA  G I+++++VF  M  +      WN++
Sbjct: 273 LIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVL--WNAM 330

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           I+ ++      +A+ L+ +M++ G+ P++ T+  +L AC+  GL+  G
Sbjct: 331 IASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEG 378


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 155/484 (32%), Positives = 264/484 (54%), Gaps = 45/484 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     TF S+L+ C + + ++ G+++H+ I +     +  + + L+ +Y   G +
Sbjct: 172 VSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEV 231

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT------ 196
           D A  +FD M  R A +  WNS+IS Y+  G + +A  L+  M+ + +E +  T      
Sbjct: 232 DTARNLFDNMLERDAVS--WNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAG 289

Query: 197 -------FPRVLK----------------------ACAGLGLIRVGEKVHLDAVRFGFGF 227
                  F + LK                      AC+ +G IR+G+++H   +R     
Sbjct: 290 GCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHM 349

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
              V NALV MYA+C DI  A  +F    +K  I++NSML+G  H G + EA  +FR ++
Sbjct: 350 LSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELL 409

Query: 288 LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKL 343
           L G +PD V  +SIL   A  + L+ G + H ++ + R     L + N+L+ +Y++ GK+
Sbjct: 410 LFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKV 469

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSAC 400
            +A  +F  + +KD V++ S+I  +    E   A+  FE+M+R  + PDH+T +++LSAC
Sbjct: 470 SEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSAC 529

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G V   E LF+ M   +G+SPR+EHYACM +L+GR GL+++A   I+ +M +  +  
Sbjct: 530 SHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKE-IITRMPYRPTSA 588

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           +W  L+ AC +HGN+ +GE AA+KL E+ P++   + L+  +Y  AG    +  +  ++ 
Sbjct: 589 IWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMR 648

Query: 521 DRGL 524
           D G+
Sbjct: 649 DSGV 652



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 222/463 (47%), Gaps = 50/463 (10%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           S+IQ L +S  +   +  ++ + LL +C +  ++  G +LH  I ++ L ++  + SKL+
Sbjct: 63  SLIQ-LRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLV 121

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
             Y++   + EAH + +  ++       WN LI+ Y +   YE AI  Y QM  +GV PD
Sbjct: 122 MFYSSLEFLPEAHTLVE--TSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPD 179

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
            FTFP +LKAC     ++ G +VH     +   +  FV NAL+ MY +CG++  AR +FD
Sbjct: 180 NFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFD 239

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM--------------------------- 286
            +  +D +S+NSM++ Y   G+  EAF++F  M                           
Sbjct: 240 NMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQ 299

Query: 287 ---ILN-----GFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
              +L+     G   D VA+   L   S    +R+G ++HG+ +R        + N+L+ 
Sbjct: 300 ALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVT 359

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLT 392
           +Y++   +  A  LF     K  ++WNS++   +   +  EAL  F ++   GV PD++T
Sbjct: 360 MYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVT 419

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMI 449
           F S+L  CA +  ++ G      + +       +  +  +V++Y RAG + EA   +  +
Sbjct: 420 FASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSL 479

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
            +K E   + ++ G   Y     G   +      K F+++PD+
Sbjct: 480 SKKDEVTYTSLIAG---YGMQGEGGKAVRLFEEMKRFQIKPDH 519



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 15/217 (6%)

Query: 265 SMLTGYIHHGLLVEAFDIF-----RGMILNGFDPDPVAISSILAN---ASLLRIGAQVHG 316
           S L  +  HG L ++F+ F     R    + FD    +IS +L +   +S L  G Q+HG
Sbjct: 44  SSLKDFASHGQLSKSFEAFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHG 103

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
            ++  G+  D  + + L++ YS    L +A  L +        SWN +I ++ K      
Sbjct: 104 HIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEA 163

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A++ ++QM   GV PD+ TF S+L AC    ++K G  +    +  +     +  +  ++
Sbjct: 164 AILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKS-INSWSTPWSLFVHNALI 222

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           ++YGR G +D A ++    +E +A  V W +++ +CY
Sbjct: 223 SMYGRCGEVDTARNLFDNMLERDA--VSWNSMI-SCY 256


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 254/446 (56%), Gaps = 18/446 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS----SKLLRLYATFGLIDEA 145
            +  +A+ L+ C Q      G  LH      +L++   +     + LL +Y     + +A
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLH----CEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M  R   +F   +LI GYAE   + +AI L+ ++  E V P+QFTF  VL+ACA
Sbjct: 93  SKLFDEMPERNTISFV--TLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACA 149

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +  + +G ++H   ++ G   D FV NAL+D+YAKCG +  +  +F    +++ +++N+
Sbjct: 150 TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNT 209

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
           ++ G++  G   +A  +F  M+        V  SS L A ASL  L  G Q+H   ++  
Sbjct: 210 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTT 269

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
            + D+ + N+LI +Y+K G +  A  +FD M ++D VSWN++I     H    EAL  F+
Sbjct: 270 FDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFD 329

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+   V PD LTFV +LSACA+ G +  G+  F+ M++ +GI P +EHY CMV L GR 
Sbjct: 330 KMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 389

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D+A  +I +++ F+ S +VW ALL AC +H ++ +G  +AQ++ E+EP ++    LL
Sbjct: 390 GHLDKAVKLI-DEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLL 448

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y  A R D+V  V + +  +G++
Sbjct: 449 SNMYATAKRWDNVASVRKNMKRKGVK 474


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 248/472 (52%), Gaps = 44/472 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+      F + L  C ++  ++   K+H  I    L ++  + +K+L L      +D A
Sbjct: 2   GVRELENRFVTTLRNCPKIAELK---KIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYA 58

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKAC 204
             +F Q+ N   F++  N++I  Y    ++  AI ++ QM   +   PD+FTFP V+K+C
Sbjct: 59  TMIFQQLENPNVFSY--NAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSC 116

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV------------------ 246
           AGL   R+G++VH    +FG        NAL+DMY KCGD+                   
Sbjct: 117 AGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWN 176

Query: 247 -------------KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
                         AR VFD +  + ++S+ +M+ GY   G   +A  IFR M + G +P
Sbjct: 177 SLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEP 236

Query: 294 DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D +++ S+L   A    L +G  +H +  + G   +  + N+L+ +Y+K G +D+A  LF
Sbjct: 237 DEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLF 296

Query: 351 DHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           + M +KDV+SW+++I     H K + A+  FE M++ GV P+ +TFV +LSACAH G   
Sbjct: 297 NQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWN 356

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G R F VM   Y + P++EHY C+V+L GR+G +++A   I+ KM  +     W +LL 
Sbjct: 357 EGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTIL-KMPMQPDSRTWNSLLS 415

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           +C +H N+ +   A ++L +LEP+   N+ LL  IY    + + V  V +++
Sbjct: 416 SCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLI 467


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 230/411 (55%), Gaps = 16/411 (3%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  + + LL LYA  G + +A + FD+M    +    W +LI+ Y + G   +AI +   
Sbjct: 109 NPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPS-TVSWTALITAYMDAGRGLEAIGVARS 167

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
               GV PD FT  RVL ACA +  +  GE+V   A + G   + FV  A VD+Y KCG+
Sbjct: 168 AFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGE 227

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           + KAR VFD++ NKD++++ +M+ GY  +G   EA ++F  M + G  PD   ++  L+ 
Sbjct: 228 MDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSA 287

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----SLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            +  R+GA   G  +   ++WD  + N     +LI +Y+K G   +A  +F  M  +D++
Sbjct: 288 CT--RLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDII 345

Query: 360 SWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
            WN++I       H K   AL+   QM++ G+  +  TF+ LL +C H G VK G R F 
Sbjct: 346 VWNAMILGLGMTGHEKIAFALV--GQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFR 403

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + Y I PR+EHY  MV+L  RAGL+ EA+ +I + M  EA+ VVWGALL  C +H N
Sbjct: 404 NMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLI-QDMPMEANAVVWGALLGGCKIHRN 462

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + E   ++L +LEP N  N+ +L  IY N+GR +D  ++   +  +G+E
Sbjct: 463 ADLAEHVLKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVE 513



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 151/291 (51%), Gaps = 11/291 (3%)

Query: 192 PDQFTFPRVLKACAGL-GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           P   TFP  +K+ + L   +  G ++H  +++     +  VL +L+++YA+CG +  A+ 
Sbjct: 72  PSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQK 131

Query: 251 VFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD---PVAISSILANAS 306
            FD +      +S+ +++T Y+  G  +EA  + R    +G  PD    V + +  A  +
Sbjct: 132 AFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVA 191

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G +V     + G+  ++ +A + + +Y K G++D+A  +FD M  KDVV+W +++ 
Sbjct: 192 DLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVG 251

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            ++ +    EAL  F  M+ +G+ PD  T    LSAC  LG++ +G R+  ++     + 
Sbjct: 252 GYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLG 311

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             V   A ++++Y + G   EA+ M+ +KM      +VW A++    + G+
Sbjct: 312 NPVLGTA-LIDMYAKCGSTGEAW-MVFQKMR-NRDIIVWNAMILGLGMTGH 359



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 9/215 (4%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           S+  +G+   + T   +L  C ++  +  G ++        +  N  +++  + LY   G
Sbjct: 167 SAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCG 226

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +D+A  VFD+M N+   A  W +++ GYA  G   +A+ L+F M+ EG+ PD +T    
Sbjct: 227 EMDKARGVFDKMKNKDVVA--WGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGA 284

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKD 259
           L AC  LG + +G +V +  +++       VL  AL+DMYAKCG   +A  VF ++ N+D
Sbjct: 285 LSACTRLGALDLGRRV-VGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRD 343

Query: 260 LISYNSMLTGYIHHGLLVEAFDIF-----RGMILN 289
           +I +N+M+ G    G    AF +       GM LN
Sbjct: 344 IIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLN 378



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 9/203 (4%)

Query: 295 PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           P AI S       L  GAQ+H   L+     +  +  SL+ +Y++ G+L  A   FD M 
Sbjct: 78  PFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMR 137

Query: 355 Q-KDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           Q    VSW ++I A+    +  EA+         GV PD  T V +L+ACA +  +  GE
Sbjct: 138 QPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGE 197

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL--YA 468
            +++   EK GI+  V      V+LY + G +D+A   + +KM+     V WGA++  YA
Sbjct: 198 EVWTA-AEKEGIAGNVFVATAAVDLYVKCGEMDKARG-VFDKMK-NKDVVAWGAMVGGYA 254

Query: 469 CYLHGNVCMGETAAQKLFELEPD 491
              H    +    A ++  + PD
Sbjct: 255 SNGHPREALELFFAMQVEGMRPD 277


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 266/484 (54%), Gaps = 18/484 (3%)

Query: 52  SSPTPLLTNQK----AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAV 107
           S P P+  + +     FP   L  L +   DLE S    I      + +LL+ C   K +
Sbjct: 21  SLPAPVSEDSEDESLKFPSNDL-LLRTSSNDLEGSY---IPADRRFYNTLLKKCTVFKLL 76

Query: 108 EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
             G  +H  I  ++ R +  + + LL +YA  G ++EA +VF++M  R      W +LIS
Sbjct: 77  IQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVT--WTTLIS 134

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
           GY++     DA+  + QM   G  P++FT   V+KA A       G ++H   V+ GF  
Sbjct: 135 GYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 194

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           +  V +AL+D+Y + G +  A+ VFD + +++ +S+N+++ G+       +A ++F+GM+
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254

Query: 288 LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
            +GF P   + +S+    S    L  G  VH ++++ G +      N+L+ +Y+K G + 
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314

Query: 345 QACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +FD + ++DVVSWNS++ A   H    EA+ +FE+M R G+ P+ ++F+S+L+AC+
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G +  G   + +M +K GI P   HY  +V+L GRAG ++ A   I E+M  E +  +
Sbjct: 375 HSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI-EEMPIEPTAAI 432

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           W ALL AC +H N  +G  AA+ +FEL+PD+     +L  IY + GR +D  RV + + +
Sbjct: 433 WKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKE 492

Query: 522 RGLE 525
            G++
Sbjct: 493 SGVK 496


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 261/453 (57%), Gaps = 14/453 (3%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           ++S   +G+   + T++ L++ C   +AV  G  + R +  N  +    + + L+ +Y  
Sbjct: 1   MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVK 60

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
           F L+++AHQ+FDQM  R   +  W ++IS Y++   ++ A+ L   M  +GV P+ +T+ 
Sbjct: 61  FNLLNDAHQLFDQMPQRNVIS--WTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYS 118

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL+AC G+  +R+   +H   ++ G   D +V +AL+D++AK G+   A +VFD +   
Sbjct: 119 SVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTG 175

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           D I +NS++ G+  +     A ++F+ M   GF  +   ++S+L      +LL +G Q H
Sbjct: 176 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 235

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
             +++   + DL + N+L+ +Y K G L+ A  +F+ M ++DV++W+++I   +++    
Sbjct: 236 VHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQ 293

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL  FE M+  G  P+++T V +L AC+H G ++ G   F  M + YGI+P  EHY CM
Sbjct: 294 EALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCM 353

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           ++L G+AG +D+A  ++ E ME E   V W  LL AC +  N+ + E AA+K+  L+P++
Sbjct: 354 IDLLGKAGKLDDAVKLLNE-MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPED 412

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              + +L  IY N+ + D VE + + + D G++
Sbjct: 413 AGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIK 445


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 257/438 (58%), Gaps = 10/438 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           ++ +L  C  L+ ++ G  +H  I ++    +  + + +L +YA  G ++EA  +FD+M 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +   +  W  LISGY++ G+  +A+AL+ +M   G +P++FT   +LKA         G
Sbjct: 168 TKDMVS--WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHG 225

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            ++H  ++++G+  +  V ++L+DMYA+   + +A+ +F+ +  K+++S+N+++ G+   
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G       +F  M+  GF+P     SS+    A++  L  G  VH  V++ G +    I 
Sbjct: 286 GEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIG 345

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
           N+LI +Y+K G +  A  +F  + ++D+VSWNSII     H    EAL  FEQM +  V 
Sbjct: 346 NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ 405

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ +TF+S+L+AC+H G +  G+  F +M +K+ I  +V H+  +V+L GRAG ++EA +
Sbjct: 406 PNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEA-N 463

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
             +E+M  + +  VWGALL +C +H N+ +G  AA+++FEL+P +     LL  IY +AG
Sbjct: 464 KFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAG 523

Query: 508 RLDDVERVERMLVDRGLE 525
           RL D  +V +M+ + G++
Sbjct: 524 RLSDAAKVRKMMKESGVK 541



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 179/334 (53%), Gaps = 20/334 (5%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           +EP++  + ++L  C  L  ++ G  +H       F  D  +LN +++MYAKCG + +A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL- 308
            +FD++  KD++S+  +++GY   G   EA  +F  M+  GF P+   +SS+L  +    
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGP 220

Query: 309 --RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
               G Q+H + L+ G + ++ + +SL+ +Y++   + +A  +F+ +  K+VVSWN++I 
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 367 AHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            H++  E    +  F QM R G  P H T+ S+ +ACA  GS++ G+ + + ++ K G  
Sbjct: 281 GHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVI-KSGGQ 339

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P       ++++Y ++G I +A    V +   +   V W +++     HG   +G  A Q
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKK--VFRRLVKQDIVSWNSIISGYAQHG---LGAEALQ 394

Query: 484 KLFE------LEPDNEHNFELLIKIYGNAGRLDD 511
            LFE      ++P NE  F  ++    ++G LD+
Sbjct: 395 -LFEQMLKAKVQP-NEITFLSVLTACSHSGLLDE 426



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 6/277 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +SLL+      +  HG +LH          N  + S LL +YA +  + EA  +F+ +
Sbjct: 208 TLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +   +  WN+LI+G+A  GE E  + L+ QM  +G EP  FT+  V  ACA  G +  
Sbjct: 268 AAKNVVS--WNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQ 325

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH   ++ G     ++ N L+DMYAK G I  A+ VF R+  +D++S+NS+++GY  
Sbjct: 326 GKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQ 385

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HGL  EA  +F  M+     P+ +   S+L   +++ LL  G      + +  +E  +  
Sbjct: 386 HGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAH 445

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
             +++ +  + G+L++A    + MP K   + W +++
Sbjct: 446 HVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 251/475 (52%), Gaps = 17/475 (3%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  F K KL  L +I   L SS  N    +    A LL+ C  L  +    ++H  I   
Sbjct: 2   QSQFTKPKL--LRTINNVLASSTPNPRAPEQNCLA-LLQACNALPKL---TQIHTHILKL 55

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVF--DQMSNRTAFAFPWNSLISGYAELGEYED- 177
            L  N  + +K   + +     D A       +   R   AF +N+LI  YA+ G  +D 
Sbjct: 56  GLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDK 115

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
           A+ALY  M  + + P++FT+P VLKACAGL ++ +G+ VH   V+FGF  D  V N +V 
Sbjct: 116 ALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVH 175

Query: 238 MYAKC-GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           MY+ C G I  AR VFD +   D +++++M+ GY   G   EA  +FR M +    PD +
Sbjct: 176 MYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEI 235

Query: 297 AISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            + S+L+  +    L +G  +  ++ R  +   + ++N+LI +++K G + +A  LF  M
Sbjct: 236 TMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAM 295

Query: 354 PQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            +K +VSW S+I     H +  EA   FE+M   GV PD + F+ LLSAC+H G V+ G 
Sbjct: 296 NEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGR 355

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
             F  M++KY + P++EHY CMV++Y R GL+ EA    V  M  E +PV+   L+ AC 
Sbjct: 356 EYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALE-FVRNMPIEPNPVILRTLVSACR 414

Query: 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            HG   +GE   + L + EP +E N+ LL  IY      +   ++  ++  +G++
Sbjct: 415 GHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMK 469


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 241/447 (53%), Gaps = 10/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      +  S +  C Q   ++ G  +H+ +  +    +    + L+ +YA  G +  
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLA 375

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD  + +   +  WNSLI+GY + G Y++ +  +  M+ E  +PD  TF  +L   
Sbjct: 376 AQEVFD--TTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIF 432

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + L  I  G  +H D ++FGF  +  + N+L+D+YAKCG++     VF  +   D+IS+N
Sbjct: 433 SQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWN 492

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRR 321
           +++   +H       F +   M   G  PD   +  IL   SLL   R G ++HG++ + 
Sbjct: 493 TVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS 552

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G E ++ I N+LI +YSK G L+    +F +M +KDVV+W ++I A   + +  +AL  F
Sbjct: 553 GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAF 612

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           + ME  GVLPD + F++ + AC+H G VK G R F  M   Y + PR+EHYAC+V+L  R
Sbjct: 613 QDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLAR 672

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           +GL+ +A   I+  M  +    +WGALL AC   GN  + +  ++K+ EL  D+   + L
Sbjct: 673 SGLLAQAEEFILS-MPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           +  IY   G+ D V+ V   +  +GL+
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLK 758



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 222/445 (49%), Gaps = 27/445 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +SLL+T    K       +H LI T+ L  +   S KL+  YA       +  VF  +S 
Sbjct: 23  SSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSIS- 81

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            T   + WNS+I      G +  A+  Y +M E+ ++PD FTFP V+ +CA +  + +G 
Sbjct: 82  PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            VH  A+  GF  D ++ NAL+DMY++  D+  AR VF+ + N+D +S+NS+++GY  +G
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSI-LANASLLRI--GAQVHGWVLRRGVEWDLCIAN 331
              +A D++    + G  PD   +SS+ LA  SL+ +  G  VHG + + G+  D+ I N
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGN 261

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHEALIYFEQMERDGVLPD 389
            L+ +Y K  +L +A  +F  M  KD V+WN++I  +A    HEA +       DG +PD
Sbjct: 262 GLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPD 321

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE--HYAC--MVNLYGRAGLIDEA 445
            L+  S + AC   G ++VG+      V KY I    E    AC  ++++Y + G     
Sbjct: 322 MLSITSTIRACGQSGDLQVGK-----FVHKYLIGSGFECDTVACNILIDMYAKCG----- 371

Query: 446 YSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMG-ETAAQKLFELEPDNEHNFELLI 500
             ++  +  F+ +     V W +L+      G    G E+      E +PD+   F LL+
Sbjct: 372 -DLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSV-TFVLLL 429

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            I+     ++    +   ++  G E
Sbjct: 430 SIFSQLADINQGRGIHCDVIKFGFE 454


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 245/452 (54%), Gaps = 20/452 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     TFA  L  C  +  +  G  +H+ I  + + ++  +   LL +Y     +
Sbjct: 123 IAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEM 182

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVL 201
            EA +VF+ M  R   ++   ++IS Y + GE+ +A+ L+ +M + E +EP+ +TF  +L
Sbjct: 183 VEARKVFEGMKARNVRSY--TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A  GLG +  G KVH      GF  +  V NALV MY KCG  V+AR VFD +  +++I
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
           S+ SM+  Y  HG   EA ++F+ M     +P  V+ SS L   +LL     G ++H   
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIH--- 354

Query: 319 LRRGVEWDLC---IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
             R VE +L    +  SL+ +Y++ G LD A  +F+ M  +D  S N++I A   H +  
Sbjct: 355 -HRVVEANLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKK 413

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +AL  + +ME++G+  D +TFVS+L AC+H   V         +V  +G+ P VEHY CM
Sbjct: 414 QALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCM 473

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V++ GR+G + +A  + VE M ++A  V W  LL  C  HG++  GE AA+K+FEL P  
Sbjct: 474 VDVLGRSGRLGDAEEL-VETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAE 532

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
              +  L  +Y  A R DD  RV + + +RG+
Sbjct: 533 TLPYVFLSNMYAAAKRFDDARRVRKEMEERGV 564



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/479 (29%), Positives = 237/479 (49%), Gaps = 52/479 (10%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI        SL+  C +L+A+E G +LH  +     R +  + + LL++YA  G +D
Sbjct: 23  ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLD 82

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF+ M  +  FA  W+S+I+ YA  G  E A+ LY +M  EGVEP+  TF   L  
Sbjct: 83  DAKRVFEGMEIKDLFA--WSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 140

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +  G  +H   +      D  + ++L++MY KC ++V+AR VF+ +  +++ SY
Sbjct: 141 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 200

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILANA---SLLRIGAQVHGWVL 319
            +M++ Y+  G   EA ++F  M  +   +P+    ++IL        L  G +VH  + 
Sbjct: 201 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 260

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
            RG + ++ + N+L+ +Y K G   +A  +FD M  ++V+SW S+I A   H    EAL 
Sbjct: 261 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 320

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M+   V P  ++F S L+ACA LG++  G  +   +VE    SP++E    ++++Y
Sbjct: 321 LFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQME--TSLLSMY 375

Query: 437 GRAGLIDEAYSM------------------------------IVEKMEFEASP---VVWG 463
            R G +D+A  +                              I  KME E  P   + + 
Sbjct: 376 ARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFV 435

Query: 464 ALLYACYLHGNVCMGETAAQKLF---ELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
           ++L AC     V       Q L     + P  EH +  ++ + G +GRL D E  VE M
Sbjct: 436 SVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEH-YLCMVDVLGRSGRLGDAEELVETM 493



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 183/388 (47%), Gaps = 38/388 (9%)

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I+     G    A+ L+ +MEE G+  D+F    ++ AC  L  +  G ++H   +  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F  D  +  AL+ MYAKCG +  A+ VF+ +  KDL +++S++  Y   G    A  ++R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            MI  G +P+ V  +  L   A+ + L  G  +H  +L   V  D  + +SL+ +Y K  
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAH--SKDH-EALIYFEQMER-DGVLPDHLTFVSLL 397
           ++ +A  +F+ M  ++V S+ ++I A+  + +H EAL  F +M + + + P+  TF ++L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA------------ 445
            A   LG+++ G ++   +  + G    V     +V +YG+ G   EA            
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 446 ---YSMIV---------------EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
               SMI                ++M+ E S V + + L AC L G +  G     ++ E
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVE 359

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERV 515
               +      L+ +Y   G LDD  RV
Sbjct: 360 ANLASPQMETSLLSMYARCGSLDDARRV 387


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 248/438 (56%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S++  C  L     G ++H  +          +++ L++++++ G  DEA  VF +M
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W ++ISGY + G  E A+  Y  ME EGV PD+ T   VL ACAGLGL+  
Sbjct: 358 EFKDLVS--WTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDK 415

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H  A R G      V N+L+DMY+KC  I KA  VF RI NK++IS+ S++ G   
Sbjct: 416 GIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL 475

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +    EA   F+ MIL+   P+ V + S+L   A    L  G ++H   LR G+ +D  +
Sbjct: 476 NYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFL 534

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
            N+L+ +Y + G+++ A W   +  +KDV SWN ++  +++  +   A+  F +M    V
Sbjct: 535 PNALLDMYVRCGRMEPA-WNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDV 593

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF SLL AC+  G V  G   F  M  K+ I+P ++HYA +V+L GRAG +++AY
Sbjct: 594 NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAY 653

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I +KM  +  P +WGALL AC ++ NV +GE AAQ +FE++  +   + LL  +Y ++
Sbjct: 654 EFI-KKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADS 712

Query: 507 GRLDDVERVERMLVDRGL 524
           G+ D+V RV +++ +  L
Sbjct: 713 GKWDEVARVRKIMRENRL 730



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 246/432 (56%), Gaps = 21/432 (4%)

Query: 22  SKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQ--KAFPKTKLQALDSIIQDL 79
           S+N ++R+   +K  +IS   +   SS    +P  L+     K   +  L  LDS+ Q+L
Sbjct: 33  SRNIQTRQISLRKHHEIS---VLNPSSITAQNPNSLILELCLKGDLEKALIHLDSM-QEL 88

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           +      ++V+ ET+ +LL  C   +A   G ++H  +   + R    + + LL ++  F
Sbjct: 89  Q------VSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRF 142

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G + EA  VF +M+ R  F+  WN L+ GYA+ G +++A+ LY +M   G+ PD +TFP 
Sbjct: 143 GDLVEAWYVFGKMAERDLFS--WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPC 200

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL+ C GL  +  G +VHL  +R+GF  D  V+NAL+ MY KCGDI  AR VFDR+  +D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHG 316
            IS+N+M++GY  + + +E   +F  M     DPD + ++S+++    L   R+G +VHG
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
           +V++ G   ++ + NSLI ++S  G  D+A  +F  M  KD+VSW ++I  + K+    +
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  +  ME +GV+PD +T  S+LSACA LG +  G  L     ++ G++  V     ++
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE-FADRTGLTSYVIVANSLI 439

Query: 434 NLYGRAGLIDEA 445
           ++Y +   ID+A
Sbjct: 440 DMYSKCRCIDKA 451



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 164/367 (44%), Gaps = 45/367 (12%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             G+     T AS+L  C  L  ++ GI LH       L     +++ L+ +Y+    ID
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF ++ N+   +  W S+I G   L         +FQ     ++P+  T   VL A
Sbjct: 450 KALEVFHRIPNKNVIS--WTSIILGL-RLNYRSFEALFFFQQMILSLKPNSVTLVSVLSA 506

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G +  G+++H  A+R G GFDGF+ NAL+DMY +CG +  A   F+    KD+ S+
Sbjct: 507 CARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASW 565

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N +LTGY   G    A ++F  MI +  +PD +  +S+L   S  R G    G      +
Sbjct: 566 NILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS--RSGMVTDGLEYFESM 623

Query: 324 EWDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377
           E    IA       S++ +  + G+L+ A      MP                       
Sbjct: 624 EHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMP----------------------- 660

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
                   + PD   + +LL+AC    +V++GE     + E    +  V +Y  + NLY 
Sbjct: 661 --------IDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD--TKSVGYYILLCNLYA 710

Query: 438 RAGLIDE 444
            +G  DE
Sbjct: 711 DSGKWDE 717


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 256/472 (54%), Gaps = 17/472 (3%)

Query: 63  AFPKT-KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL 121
           A+ K  +L+    +  D+++S   GI   +  + SLL++C     +E G ++H  +    
Sbjct: 162 AYAKNGELEKAIRLFSDMQAS---GIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQ 218

Query: 122 LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
           L  N  + + +  +Y   G ++ A  VFD M  + A    W  L+ GY +  + E A+ L
Sbjct: 219 LNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVT--WTGLMVGYTQAKKLEVALEL 276

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           + +M  EGVE D+F F  VLK C GL    +G ++H   V+ G   +  V   LVD Y K
Sbjct: 277 FARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVK 336

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF-----RGMILNGFDPDPV 296
           CGDI  A   F RI   + +S++++++G+   G L +   IF      G++LN F    V
Sbjct: 337 CGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSV 396

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
              +  A A+ L +G+Q HG  ++RG+   L   ++++ +YSK G+LD A   F+ + + 
Sbjct: 397 -FQACAAQAN-LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEP 454

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           D V+W +II     H    EAL +F +M+  GV P+ +TF+++L+AC+H G V   ++  
Sbjct: 455 DAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYL 514

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M   YG+ P ++HY CM++ Y RAGL+ EA  +I  +M FE   + W +LL  C+ H 
Sbjct: 515 GSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELI-NRMPFEPDAMSWKSLLGGCWAHC 573

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ++ +G+ AA+ LF L+P +   + LL  +Y   G+ ++   V +++ +R L+
Sbjct: 574 DLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELK 625



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 193/395 (48%), Gaps = 11/395 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           ++V   ++  L E C +L+++  G  +H  +   +   +  I + LLR+Y   G   +  
Sbjct: 83  VSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQ 142

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VFD+M  +   +  W  +IS YA+ GE E AI L+  M+  G+ P+   +  +L++C G
Sbjct: 143 KVFDEMLMKNLVS--WVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLG 200

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
              + +G+++H   +R     +  V  A+ +MY +CG +  A+ VFD +  ++ +++  +
Sbjct: 201 PSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGL 260

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGV 323
           + GY     L  A ++F  M + G + D    S +L     L    +G Q+H  +++ G 
Sbjct: 261 MVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGA 320

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQ 380
           E ++ +   L+  Y K G ++ A   F  + + + VSW+++I   S+     + +  F  
Sbjct: 321 ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTS 380

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           +  +GV+ +   + S+  ACA   ++ +G +     + K G+   +   + MV +Y + G
Sbjct: 381 LRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAI-KRGLVSYLYGESAMVTMYSKCG 439

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            +D A     E ++ E   V W A++     HGN 
Sbjct: 440 RLDYARRAF-ESID-EPDAVAWTAIISGYAYHGNA 472


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 169/535 (31%), Positives = 260/535 (48%), Gaps = 110/535 (20%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           E F +LL +C   K  E   ++   I T+ L  N  ++   +   + F  I  A ++FD+
Sbjct: 13  EKFITLLRSC---KNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDK 69

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +         WN++  GY + G + D + L+ ++      P+ FTFP ++K+C  L  +R
Sbjct: 70  IPQPNTAT--WNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVR 127

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAK------------------------------ 241
            GE+VH  A + GF  + FV  +L+DMY+K                              
Sbjct: 128 EGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYI 187

Query: 242 -CGDIVK-------------------------------ARTVFDRIGNKDLISYNSMLT- 268
            CGD+V                                AR +FD++ N+D +S+N+ML  
Sbjct: 188 LCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNG 247

Query: 269 ------------------------------GYIHHGLLVEAFDIFRGMILNGF----DPD 294
                                         GY+ +GL  E  + F+ M++ G     D  
Sbjct: 248 YAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFT 307

Query: 295 PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
            VA+ S  +    L +G  VH +    G + +L + N LI +Y+K G ++ A  +F+ + 
Sbjct: 308 LVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLD 367

Query: 355 QKDVVSWNSI-----IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           +KD++SWN+I     IH H+ D  AL  F++M+ +G  PD +TFV +LSAC H+G VK G
Sbjct: 368 RKDIISWNTIINGLAIHGHAPD--ALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDG 425

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
              F  MV+ Y I P++EHY CMV+L GRAGL+D+A + I  KM  E   V+W ALL AC
Sbjct: 426 FLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFI-RKMPIEPDAVIWAALLGAC 484

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            L+ NV + E A Q+L ELEP+N  NF ++  IY + GR +DV R++  + D G 
Sbjct: 485 RLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGF 539


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 266/512 (51%), Gaps = 45/512 (8%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           PL  N       K +  + ++   +  V  GI     T+ S+L+ C +   V  G  +H 
Sbjct: 110 PLPWNVLIASYAKNELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHG 169

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            I  +  + +  + + L+ +Y  FG +  A ++FD MS R A +  WN++I+ YA +G +
Sbjct: 170 SIEVSSYKCSLYVCNALISMYKRFGNVGIARRLFDHMSERDAVS--WNAVINCYASVGMW 227

Query: 176 EDAIALYFQMEEEGVEPDQFT--------------------------FPRVL-------- 201
            +A  L+ +M   GVE    T                          FP  L        
Sbjct: 228 SEAFELFDKMRFSGVEVSVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIG 287

Query: 202 -KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
            KAC+ +G IR+G+++H  A+   +     V N L+ MY+KC D+  A  VF +     L
Sbjct: 288 LKACSLIGAIRLGKEIHGLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSL 347

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
            ++NS+++GY       EA  + R M+L GF P+ + ++SIL   A  + L+ G + H +
Sbjct: 348 CTWNSIISGYAQVNKSEEASYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCY 407

Query: 318 VLRRGVEWDLCIA-NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE--- 373
           +LRR    D  +  NSL+ VY+K GK+  A  + + M + D V++ S+I  +    E   
Sbjct: 408 ILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYGNQGEGRV 467

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F++M R G+ PD +T V++LSAC+H   V  G+RLF  M  KYGI P ++H++CMV
Sbjct: 468 ALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMV 527

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +LYGRAG + +A   I+ +M +E S   W  LL AC++HGN  +G+ AA+KL E++P+N 
Sbjct: 528 DLYGRAGFLAKAKD-IIHRMPYEPSGATWATLLNACHIHGNTEIGKWAAEKLLEMKPENP 586

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + L+  +Y  AG    +  V  ++ D G+ 
Sbjct: 587 GYYVLIANMYATAGSWSKLAEVRTIMRDLGVR 618



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 228/517 (44%), Gaps = 82/517 (15%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +Q   S+V   + + +   ASLL  C  + A   G+++H    ++ +  +  +  KL+  
Sbjct: 31  LQSSPSAVSGDVVLHSA--ASLLSACVDVLAFVPGLQIHAHCVSSGVEYHSALVPKLVTF 88

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y+ F L  EA  + +  ++      PWN LI+ YA+   +E+ +A Y +M  +G+ PD F
Sbjct: 89  YSAFNLHREAQSINE--NSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVSKGIRPDAF 146

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T+P VLKAC     +  G  VH       +    +V NAL+ MY + G++  AR +FD +
Sbjct: 147 TYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGNVGIARRLFDHM 206

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP---------------------- 293
             +D +S+N+++  Y   G+  EAF++F  M  +G +                       
Sbjct: 207 SERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIISGGYLHTGNYVGAL 266

Query: 294 -------------DPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
                        DPVA+   L   SL   +R+G ++HG  + R  +    + N+LI +Y
Sbjct: 267 GLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHRSYDGIDNVRNTLITMY 326

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFV 394
           SK   L  A  +F    +  + +WNSII  ++   K  EA     +M   G  P+ +T  
Sbjct: 327 SKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEASYLLREMLLAGFQPNFITLA 386

Query: 395 SLLSACAHLGSVKVGER----------------LFSVMVEKYGISPRV------------ 426
           S+L  CA + +++ G+                 L++ +V+ Y  S ++            
Sbjct: 387 SILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSE 446

Query: 427 ---EHYACMVNLYGRAGLIDEAYSMIVEKME--FEASPVVWGALLYACYLHGNVCMGETA 481
                Y  +++ YG  G    A ++  E +    +  PV   A+L AC     V  G+  
Sbjct: 447 IDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVHEGQRL 506

Query: 482 AQKL---FELEPDNEHNFELLIKIYGNAGRLDDVERV 515
             K+   + + P  +H F  ++ +YG AG L   + +
Sbjct: 507 FMKMQPKYGIRPCLQH-FSCMVDLYGRAGFLAKAKDI 542



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 60/254 (23%)

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI---------GAQVHGWVLRRG 322
           HG L +AF  F  + L    P  V+   +L + ASLL           G Q+H   +  G
Sbjct: 16  HGHLHDAFKTFSLLRLQS-SPSAVSGDVVLHSAASLLSACVDVLAFVPGLQIHAHCVSSG 74

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           VE+   +   L+  YS      +A  + ++      + WN +I +++K+    E +  ++
Sbjct: 75  VEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVAAYK 134

Query: 380 QMERDGVLPDHLTFVSLLSACAH-----------------------------------LG 404
           +M   G+ PD  T+ S+L AC                                      G
Sbjct: 135 RMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFG 194

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EASPVV 461
           +V +  RLF  M E+  +S     +  ++N Y   G+  EA+ +  +KM F   E S + 
Sbjct: 195 NVGIARRLFDHMSERDAVS-----WNAVINCYASVGMWSEAFELF-DKMRFSGVEVSVIT 248

Query: 462 WGALLYACYLH-GN 474
           W  ++   YLH GN
Sbjct: 249 WN-IISGGYLHTGN 261


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 244/452 (53%), Gaps = 20/452 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     TFA  L  C  +  +  G  +H+ I  + + ++  +   LL +Y     +
Sbjct: 103 IAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEM 162

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVL 201
            EA +VF+ M  R   ++   ++IS Y + GE+ +A+ L+ +M + E +EP+ +TF  +L
Sbjct: 163 VEARKVFEGMKARNVRSY--TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 220

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A  GLG +  G KVH      GF  +  V NALV MY KCG  V+AR VFD +  +++I
Sbjct: 221 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 280

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
           S+ SM+  Y  HG   EA ++F+ M     +P  V+ SS L   +LL     G ++H   
Sbjct: 281 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIH--- 334

Query: 319 LRRGVEWDLC---IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
             R VE  L    +  SL+ +Y++ G LD A  +F+ M  +D  S N++I A   H +  
Sbjct: 335 -HRVVEAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKK 393

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +AL  + +ME++G+  D +TFVS+L AC+H   V      F  +V  +G+ P VEHY CM
Sbjct: 394 QALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCM 453

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V++ GR+G + +A  + VE M ++   V W  LL  C  HG++  GE AA+K+FEL P  
Sbjct: 454 VDVLGRSGRLGDAEEL-VETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAE 512

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
              +  L  +Y  A R DD  RV + + +RG+
Sbjct: 513 TLPYVFLSNMYAAAKRFDDARRVRKEMEERGV 544



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 203/369 (55%), Gaps = 14/369 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI        SL+  C +L+A+E G +LH  +     R +  + + LL++YA  G +D
Sbjct: 3   ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLD 62

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF+ M  +  FA  W+S+IS YA  G  E A+ LY +M  EGVEP+  TF   L  
Sbjct: 63  DAKRVFEGMEIKDLFA--WSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +  G  +H   +      D  + ++L++MY KC ++V+AR VF+ +  +++ SY
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILANA---SLLRIGAQVHGWVL 319
            +M++ Y+  G   EA ++F  M  +   +P+    ++IL        L  G +VH  + 
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
            RG + ++ + N+L+ +Y K G   +A  +FD M  ++V+SW S+I A   H    EAL 
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M+   V P  ++F S L+ACA LG++  G  +   +VE +  SP++E    ++++Y
Sbjct: 301 LFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMY 355

Query: 437 GRAGLIDEA 445
            R G +D+A
Sbjct: 356 ARCGSLDDA 364



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 175/368 (47%), Gaps = 38/368 (10%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           MEE G+  D+F    ++ AC  L  +  G ++H   +  GF  D  +  AL+ MYAKCG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           +  A+ VF+ +  KDL +++S+++ Y   G    A  ++R MI  G +P+ V  +  L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            A+ + L  G  +H  +L   V  D  + +SL+ +Y K  ++ +A  +F+ M  ++V S+
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 362 NSIIHAH--SKDH-EALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
            ++I A+  + +H EAL  F +M + + + P+  TF ++L A   LG+++ G ++   + 
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEA---------------YSMIV------------ 450
            + G    V     +V +YG+ G   EA                SMI             
Sbjct: 241 SR-GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 299

Query: 451 ---EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
              ++M+ E S V + + L AC L G +  G     ++ E    +      L+ +Y   G
Sbjct: 300 NLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCG 359

Query: 508 RLDDVERV 515
            LDD  RV
Sbjct: 360 SLDDARRV 367


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/484 (32%), Positives = 266/484 (54%), Gaps = 18/484 (3%)

Query: 52  SSPTPLLTNQK----AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAV 107
           S P P+  + +     FP   L  L +   DLE S    I      + +LL+ C   K +
Sbjct: 21  SLPAPVSEDSEDESLKFPSNDL-LLRTSSNDLEGSY---IPADRRFYNTLLKKCTVFKLL 76

Query: 108 EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
             G  +H  I  ++ R +  + + LL +YA  G ++EA +VF++M  R      W +LIS
Sbjct: 77  IQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVT--WTTLIS 134

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
           GY++     DA+  + QM   G  P++FT   V+KA A       G ++H   V+ GF  
Sbjct: 135 GYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 194

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           +  V +AL+D+Y + G +  A+ VFD + +++ +S+N+++ G+       +A ++F+GM+
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254

Query: 288 LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
            +GF P   + +S+    S    L  G  VH ++++ G +      N+L+ +Y+K G + 
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314

Query: 345 QACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +FD + ++DVVSWNS++ A   H    EA+ +FE+M R G+ P+ ++F+S+L+AC+
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G +  G   + +M +K GI P   HY  +V+L GRAG ++ A   I E+M  E +  +
Sbjct: 375 HSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI-EEMPIEPTAAI 432

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           W ALL AC +H N  +G  AA+ +FEL+PD+     +L  IY + GR +D  RV + + +
Sbjct: 433 WKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKE 492

Query: 522 RGLE 525
            G++
Sbjct: 493 SGVK 496


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 167/467 (35%), Positives = 257/467 (55%), Gaps = 12/467 (2%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
            L   ++ ++ L+S  + G  V   +F S+L+    +  VE G ++H ++       N  
Sbjct: 77  NLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVF 136

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
             S LL +YA    +++A +VF  ++ R +    WN+LISGYA++G+   A  L   ME 
Sbjct: 137 AGSALLDMYAKCERVEDAFEVFKSINIRNSVT--WNALISGYAQVGDRGTAFWLLDCMEL 194

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EGVE D  TF  +L       L ++  +VH   V+ G   D  V NA++  Y++CG I  
Sbjct: 195 EGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIED 254

Query: 248 ARTVFD-RIGNKDL--ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           A  VFD  I  +DL  +S+NS+LTG+   GL  +A   F  M       D  A S++L +
Sbjct: 255 AERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRS 314

Query: 305 AS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            S    L++G QVH  VL+ G E +  +A+SLI +YSK G ++ A   FD  P+   ++W
Sbjct: 315 CSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAW 374

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           NS+I     H +   AL  F  M+   V  DH+TFV++L+AC+H+G V+ G      M  
Sbjct: 375 NSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMES 434

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
            YGI PR+EHYACM++L GRAG +DEA ++I E M FE   +VW  LL AC   G++ + 
Sbjct: 435 DYGIPPRMEHYACMIDLLGRAGRLDEAKALI-EAMPFEPDAMVWKTLLGACRTCGDIELA 493

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              A  L ELEP+    + LL  ++G+  R ++   ++R++ +RG++
Sbjct: 494 SQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVK 540



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 198/381 (51%), Gaps = 27/381 (7%)

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           +V H + +      ++   N  IS      YA  G I  A ++F + S R A +  WN++
Sbjct: 19  SVNHCLAIKSGTTASIYTANNIISG-----YAKCGEIRIASKMFGETSQRDAVS--WNTM 71

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           I+G+  LG +E A+     M+  G   D ++F  +LK  A +G + VG++VH   V+ G+
Sbjct: 72  IAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGY 131

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             + F  +AL+DMYAKC  +  A  VF  I  ++ +++N++++GY   G    AF +   
Sbjct: 132 EGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDC 191

Query: 286 MILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           M L G + D    + +L         ++  QVH  +++ G+  D  + N++I  YS+ G 
Sbjct: 192 MELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGS 251

Query: 343 LDQACWLFDHMPQK---DVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSL 396
           ++ A  +FD   +    D VSWNSI+   S+     +AL +FE M    V+ DH  F ++
Sbjct: 252 IEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAV 311

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L +C+ L ++++G+++  V+V K G  P     + ++ +Y + G+I++A      +  F+
Sbjct: 312 LRSCSDLATLQLGQQV-HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDA------RKSFD 364

Query: 457 ASP----VVWGALLYACYLHG 473
           A+P    + W +L++    HG
Sbjct: 365 ATPKDSSIAWNSLIFGYAQHG 385


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 248/438 (56%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S++  C  L     G ++H  +          +++ L++++++ G  DEA  VF +M
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W ++ISGY + G  E A+  Y  ME EGV PD+ T   VL ACAGLGL+  
Sbjct: 358 EFKDLVS--WTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDK 415

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H  A R G      V N+L+DMY+KC  I KA  VF RI NK++IS+ S++ G   
Sbjct: 416 GIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL 475

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +    EA   F+ MIL+   P+ V + S+L   A    L  G ++H   LR G+ +D  +
Sbjct: 476 NYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFL 534

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
            N+L+ +Y + G+++ A W   +  +KDV SWN ++  +++  +   A+  F +M    V
Sbjct: 535 PNALLDMYVRCGRMEPA-WNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDV 593

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF SLL AC+  G V  G   F  M  K+ I+P ++HYA +V+L GRAG +++AY
Sbjct: 594 NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAY 653

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I +KM  +  P +WGALL AC ++ NV +GE AAQ +FE++  +   + LL  +Y ++
Sbjct: 654 EFI-KKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADS 712

Query: 507 GRLDDVERVERMLVDRGL 524
           G+ D+V RV +++ +  L
Sbjct: 713 GKWDEVARVRKIMRENRL 730



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 246/432 (56%), Gaps = 21/432 (4%)

Query: 22  SKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQ--KAFPKTKLQALDSIIQDL 79
           S+N ++R+   +K  +IS   +   SS    +P  L+     K   +  L  LDS+ Q+L
Sbjct: 33  SRNIQTRQISLRKHHEIS---VLNPSSITAQNPNSLILELCLKGDLEKALIHLDSM-QEL 88

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           +      ++V+ ET+ +LL  C   +A   G ++H  +   + R    + + LL ++  F
Sbjct: 89  Q------VSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRF 142

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G + EA  VF +M+ R  F+  WN L+ GYA+ G +++A+ LY +M   G+ PD +TFP 
Sbjct: 143 GDLVEAWYVFGKMAERDLFS--WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPC 200

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL+ C GL  +  G +VHL  +R+GF  D  V+NAL+ MY KCGDI  AR VFDR+  +D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHG 316
            IS+N+M++GY  + + +E   +F  M     DPD + ++S+++    L   R+G +VHG
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
           +V++ G   ++ + NSLI ++S  G  D+A  +F  M  KD+VSW ++I  + K+    +
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  +  ME +GV+PD +T  S+LSACA LG +  G  L     ++ G++  V     ++
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE-FADRTGLTSYVIVANSLI 439

Query: 434 NLYGRAGLIDEA 445
           ++Y +   ID+A
Sbjct: 440 DMYSKCRCIDKA 451



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 164/367 (44%), Gaps = 45/367 (12%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             G+     T AS+L  C  L  ++ GI LH       L     +++ L+ +Y+    ID
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF ++ N+   +  W S+I G   L         +FQ     ++P+  T   VL A
Sbjct: 450 KALEVFHRIPNKNVIS--WTSIILGL-RLNYRSFEALFFFQQMILSLKPNSVTLVSVLSA 506

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G +  G+++H  A+R G GFDGF+ NAL+DMY +CG +  A   F+    KD+ S+
Sbjct: 507 CARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASW 565

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N +LTGY   G    A ++F  MI +  +PD +  +S+L   S  R G    G      +
Sbjct: 566 NILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS--RSGMVTDGLEYFESM 623

Query: 324 EWDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377
           E    IA       S++ +  + G+L+ A      MP                       
Sbjct: 624 EHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMP----------------------- 660

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
                   + PD   + +LL+AC    +V++GE     + E    +  V +Y  + NLY 
Sbjct: 661 --------IDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD--TKSVGYYILLCNLYA 710

Query: 438 RAGLIDE 444
            +G  DE
Sbjct: 711 DSGKWDE 717


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 249/448 (55%), Gaps = 23/448 (5%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG--------------LID 143
           L++C  L     G  LH L   +    ++  ++ LL LY                  +++
Sbjct: 65  LKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLE 124

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
              +VFD+M  +   +  WN+L+ G AE G + +A+ L  +M  +G +PD FT   VL  
Sbjct: 125 SVRKVFDEMPEKDVVS--WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPI 182

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A    +R G ++H  A R GF  D FV ++L+DMYA C     +  VFD +  +D I +
Sbjct: 183 FAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILW 242

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NSML G   +G + EA  +FR M+ +G  P PV  SS++    N + L +G Q+H +V+R
Sbjct: 243 NSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIR 302

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HA-HSKDHEALIY 377
            G + ++ I++SLI +Y K G +  A  +FD +   D+VSW ++I  HA H    EAL+ 
Sbjct: 303 GGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVL 362

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F++ME   + P+H+TF+++L+AC+H G V  G + F+ M + YGI P +EH+A + +  G
Sbjct: 363 FDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLG 422

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G ++EAY+ I   M+ + +  VW  LL AC +H N  + E  A+K+F+LEP +  +  
Sbjct: 423 RPGKLEEAYNFI-SGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHI 481

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L   Y ++GR ++   + + +  +G++
Sbjct: 482 ILSNTYSSSGRWNEAAHLRKSMRKKGMQ 509



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 173/338 (51%), Gaps = 31/338 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEE----GVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
           W   I   A  G++  AIAL+ +M              + P  LK+CA LGL  +G  +H
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLH 81

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKC-----------GDIV---KARTVFDRIGNKDLISY 263
             A+R G   D F  NAL+++Y K            G  V     R VFD +  KD++S+
Sbjct: 82  ALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSW 141

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+++ G    G   EA  + R M  +G  PD   +SS+L   A  + +R G ++HG+  R
Sbjct: 142 NTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATR 201

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G   D+ + +SLI +Y+   + D +  +FD++P +D + WNS++   +++    EAL  
Sbjct: 202 NGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGL 261

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M   G+ P  +TF SL+ AC +L S+ +G++L + ++ + G    V   + ++++Y 
Sbjct: 262 FRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI-RGGFDGNVFISSSLIDMYC 320

Query: 438 RAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHG 473
           + G +  A   I ++++   SP  V W A++    LHG
Sbjct: 321 KCGNVSIARR-IFDRIQ---SPDIVSWTAMIMGHALHG 354



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 154/307 (50%), Gaps = 12/307 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G    + T +S+L    +   V  G++LH     N    +  + S L+ +YA     D
Sbjct: 166 RDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTD 225

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + +VFD +  R A    WNS+++G A+ G  ++A+ L+ +M   G++P   TF  ++ A
Sbjct: 226 YSVKVFDNLPVRDAIL--WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPA 283

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L  + +G+++H   +R GF  + F+ ++L+DMY KCG++  AR +FDRI + D++S+
Sbjct: 284 CGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSW 343

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL---- 319
            +M+ G+  HG   EA  +F  M L    P+ +   ++L   S    G    GW      
Sbjct: 344 TAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACS--HAGLVDKGWKYFNSM 401

Query: 320 --RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHAHSKDHEALI 376
               G+   L    +L     + GKL++A      M  K   S W++++ A  K H+  +
Sbjct: 402 SDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRA-CKVHKNTV 460

Query: 377 YFEQMER 383
             E++ +
Sbjct: 461 LAEEVAK 467



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 60/342 (17%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
           ++D  +      + +GI     TF+SL+  C  L ++  G +LH  +       N  ISS
Sbjct: 254 SVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISS 313

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            L+ +Y   G +  A ++FD++ +    +  W ++I G+A  G   +A+ L+ +ME   +
Sbjct: 314 SLIDMYCKCGNVSIARRIFDRIQSPDIVS--WTAMIMGHALHGPAREALVLFDRMELGNL 371

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           +P+  TF  VL AC+  GL+  G K                 N++ D Y     +     
Sbjct: 372 KPNHITFLAVLTACSHAGLVDKGWK---------------YFNSMSDHYGIVPSLEHHAA 416

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASLLR 309
           + D +G                 G L EA++   GM +      P A + S L  A  + 
Sbjct: 417 LADTLGRP---------------GKLEEAYNFISGMKIK-----PTASVWSTLLRACKVH 456

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVV---YSKDGKLDQACWLFDHMPQKDV-----VSW 361
               +   V ++  + +     S I++   YS  G+ ++A  L   M +K +      SW
Sbjct: 457 KNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSW 516

Query: 362 ------NSIIHAHSKDH-------EAL-IYFEQMERDGVLPD 389
                   +  AH K H       +AL ++ EQM R G +P+
Sbjct: 517 IEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPN 558


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 226/404 (55%), Gaps = 9/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +S+ L+ +YA  G +  A ++FD M +R   +  WN+LI GY++  +Y++ + L+  M  
Sbjct: 61  VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVS--WNTLICGYSQYNKYKEVLRLFDAMTA 118

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             ++ D  T  +++ AC+ LG     + +           D ++ N L+DMY + G++  
Sbjct: 119 ANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTA 178

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR +FD +  +D+IS+ SM+TGY       +A  +F+ M+     PD V ++S+L   A+
Sbjct: 179 ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L +G  VH ++ R GV+ D+ + NSLI +Y K G +++A  +F  M  KD VSW S+
Sbjct: 239 LGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSV 298

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I   + +   + AL  F QM R+GV P H TFV +L ACAH G V  G   F  M   +G
Sbjct: 299 ISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHG 358

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P ++HY C+V+L  R+G ID+AY  I +KM      VVW  LL AC LHGNV + E A
Sbjct: 359 LVPAMKHYGCVVDLLSRSGNIDKAYEFI-KKMPIVPDVVVWRILLSACKLHGNVVLAEIA 417

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++L EL+P +  N+ LL   Y    R DD  ++  ++ D  ++
Sbjct: 418 TKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQ 461



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 19/304 (6%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +++  ++     I     T   ++  C  L   E    + + I  N L  +  + + L+ 
Sbjct: 109 VLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLID 168

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G +  A ++FD M  R   +  W S+I+GY++  ++ DA+ L+ +M    V+PD+
Sbjct: 169 MYGRLGNLTAARKLFDNMPKRDVIS--WTSMITGYSQASQFSDAVKLFQEMMAAKVKPDK 226

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL ACA LG + VG  VH    R G   D +V N+L+DMY KCG + KA  VF R
Sbjct: 227 VTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHR 286

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           + +KD +S+ S+++G   +G    A D+F  M+  G  P       IL   A+A L+  G
Sbjct: 287 MKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKG 346

Query: 312 AQ-------VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNS 363
            +       VHG V    ++   C+ + L    S+ G +D+A      MP   DVV W  
Sbjct: 347 LEYFESMESVHGLV--PAMKHYGCVVDLL----SRSGNIDKAYEFIKKMPIVPDVVVWRI 400

Query: 364 IIHA 367
           ++ A
Sbjct: 401 LLSA 404



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 146/268 (54%), Gaps = 9/268 (3%)

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +   +H+ A++ GF    FV NAL+ MYA CG +  A+ +FD + ++DL+S+N+++ GY 
Sbjct: 42  ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS 101

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLC 328
            +    E   +F  M       D V +  I+   S L        +  ++    +E D+ 
Sbjct: 102 QYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVY 161

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           + N+LI +Y + G L  A  LFD+MP++DV+SW S+I  +S+  +   A+  F++M    
Sbjct: 162 LGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK 221

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD +T  S+LSACAHLG + VG  +    + ++G+   +     ++++Y + G++++A
Sbjct: 222 VKPDKVTVASVLSACAHLGKLDVGWAVHH-YIRRHGVQADIYVGNSLIDMYCKCGMVEKA 280

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHG 473
              +  +M+ +   V W +++    ++G
Sbjct: 281 LE-VFHRMK-DKDSVSWTSVISGLAVNG 306



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 296 VAISSILANASLL----------RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           VA+SS +A A+L+           I + +H   L+ G E  L ++N+LI +Y+  G+L  
Sbjct: 18  VALSSTIAPAALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGF 77

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD M  +D+VSWN++I  +S   K  E L  F+ M    +  D +T V ++ AC+H
Sbjct: 78  AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 137

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           LG  +  + +   + E   +   V     ++++YGR G +  A
Sbjct: 138 LGDWEFADSMVKYIKEN-NLEIDVYLGNTLIDMYGRLGNLTAA 179


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 262/521 (50%), Gaps = 87/521 (16%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+        ++L +C   +A   G K+H  +    L     +++ +L +Y   G  
Sbjct: 155 VGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV------------ 190
           + A  VF++M  R+  +  WN+++S Y   G  + A++++  MEE  +            
Sbjct: 215 ETARAVFERMKVRSESS--WNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQ 272

Query: 191 --------------------EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
                               EPD+FT   VL ACA L ++++G+++H   +R G  +   
Sbjct: 273 NGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQ 332

Query: 231 VLNALVDMYAKCG---------------------------------DIVKARTVFDRIGN 257
           ++NAL+  YAK G                                 D  +AR VFD + N
Sbjct: 333 IMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNN 392

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQV 314
           +D+I++ +M+ GY  +G   EA ++FR MI +G +P+   ++++L A ASL  L  G Q+
Sbjct: 393 RDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQI 452

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKL-------DQACWLFDHMPQKDVVSWNSIIHA 367
           H   +R   E  + ++N++I VY++ G +       DQ CW      +K+ V+W S+I A
Sbjct: 453 HCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICW------RKETVTWTSMIVA 506

Query: 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
              H    +A++ FE+M R GV PD +T++ + SAC H G +  G+R +  M+ ++GI P
Sbjct: 507 LAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVP 566

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
            + HYACMV+L  RAGL+ EA+  I ++M      VVWG+LL AC +  N  + E AA+K
Sbjct: 567 EMSHYACMVDLLARAGLLTEAHEFI-QRMPVAPDTVVWGSLLAACRVRKNADLAELAAEK 625

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  ++PDN   +  L  +Y   GR +D  R+ ++  D+ ++
Sbjct: 626 LLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVK 666



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 216/480 (45%), Gaps = 87/480 (18%)

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           R+N    + LL +YA  G + +A  VF QM  R A +  W  ++ G    G + DA+  +
Sbjct: 94  RRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVS--WTVMVVGLNRAGRFWDAVKTF 151

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
             M  EG+ P QF    VL +CA      +G KVH   ++ G      V N+++ MY KC
Sbjct: 152 LDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKC 211

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF- 291
           GD   AR VF+R+  +   S+N+M++ Y H G +  A  +F  M          I+ G+ 
Sbjct: 212 GDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYN 271

Query: 292 ---------------------DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
                                +PD   ++S+L   AN  +L++G Q+H ++LR G+ +  
Sbjct: 272 QNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSS 331

Query: 328 CIANSLIVVYSKDGKLD---------------------------------QACWLFDHMP 354
            I N+LI  Y+K G ++                                 QA  +FD M 
Sbjct: 332 QIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMN 391

Query: 355 QKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            +DV++W ++I     + ++ EA+  F  M R G  P+  T  ++LSACA L  +  G++
Sbjct: 392 NRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ 451

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +    +        V     ++ +Y R+G +  A   + +++ +    V W +++ A   
Sbjct: 452 IHCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLA-RRVFDQICWRKETVTWTSMIVALAQ 509

Query: 472 HGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDRGL 524
           HG   +GE A   LFE      ++PD    +  +     +AG +D  +R  E+ML + G+
Sbjct: 510 HG---LGEQAIV-LFEEMLRVGVKPDRV-TYIGVFSACTHAGFIDKGKRYYEQMLNEHGI 564



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 152/365 (41%), Gaps = 48/365 (13%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  ++   S +++G    + T A++L  C  L  + +G ++H     +L  ++  +S+ +
Sbjct: 412 DEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAI 471

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G +  A +VFDQ+  R      W S+I   A+ G  E AI L+ +M   GV+P
Sbjct: 472 ITVYARSGSVPLARRVFDQICWRKE-TVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKP 530

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAV-RFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           D+ T+  V  AC   G I  G++ +   +   G   +      +VD+ A+ G + +A   
Sbjct: 531 DRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEF 590

Query: 252 FDRIG-NKDLISYNSMLTG--YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN--AS 306
             R+    D + + S+L       +  L E         L   DPD     S LAN  ++
Sbjct: 591 IQRMPVAPDTVVWGSLLAACRVRKNADLAE----LAAEKLLSIDPDNSGAYSALANVYSA 646

Query: 307 LLRIGAQVHGWVLRR--------GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
             R       W LR+        G  W      S + V+  D  L          PQ+D 
Sbjct: 647 CGRWNDAARIWKLRKDKAVKKETGFSWTH--VQSKVHVFGADDVLH---------PQRDA 695

Query: 359 VSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           +             +A   +E++++ G +PD       L++  H    ++ E L S   E
Sbjct: 696 IC-----------KKAAEMWEEIKKAGFVPD-------LNSVLHDVDDELKEELLSRHSE 737

Query: 419 KYGIS 423
           K  I+
Sbjct: 738 KLAIA 742


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 247/448 (55%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+ +   TF  +L+ C +    + GI LH L+       +    + LL +Y+  G ++
Sbjct: 104 KHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLN 163

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +AH+VF+++  R+     W +L SGY   G++ +AI L+ +M E GV PD +   +VL A
Sbjct: 164 DAHKVFEEIPERSVVT--WTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSA 221

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  +G +  GE +           + FV   LV++YAKCG + KAR+VFD +G KD++++
Sbjct: 222 CVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTW 281

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASL--LRIGAQVHGWVLR 320
           ++M+ GY  +    E  + F  M+     PD  +I   L++ ASL  L +G      + R
Sbjct: 282 STMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-HEALIY-- 377
                +L +AN+LI +Y+K G + +   +F  M +KD+V  N+ I   +K+ H  L +  
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F Q E+ G+ PD  TF+ LL  C H G ++ G R F+ +   Y +   VEHY CMV+L+G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWG 461

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG++D+AY +I + M    + +VWGALL  C L  +  + ET  ++L  LEP N  N+ 
Sbjct: 462 RAGMLDDAYRLICD-MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYV 520

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L  IY  +GR D+   V  M+  +G++
Sbjct: 521 QLSNIYSVSGRWDEAAEVRDMMNRKGMK 548



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 165/303 (54%), Gaps = 11/303 (3%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F +N+LI+G+     + + + L+  + + G+    FTFP VLKAC      ++G  +H  
Sbjct: 77  FLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSL 136

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            V+ GF  D   + +L+ +Y+  G +  A  VF+ I  + ++++ ++ +GY   G   EA
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREA 196

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG-WVLRRGVEWDL----CIANSLI 334
            D+F+ M+  G  PD   I  +L  ++ + +G    G W+++   E ++     +  +L+
Sbjct: 197 IDLFKKMVEMGVRPDSYFIVQVL--SACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLV 254

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHL 391
            +Y+K GK+++A  +FD M +KD+V+W+++I  ++ +    E + +F QM ++ + PD  
Sbjct: 255 NLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQF 314

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           + V  LS+CA LG++ +GE   S +++++     +     ++++Y + G +   + +  E
Sbjct: 315 SIVGFLSSCASLGALDLGEWGIS-LIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373

Query: 452 KME 454
             E
Sbjct: 374 MKE 376



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 49/372 (13%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+   +     +L  C  +  ++ G  + + +    ++KN  + + L+ LYA  G +
Sbjct: 204 VEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  VFD M  +      W+++I GYA     ++ I  + QM +E ++PDQF+    L 
Sbjct: 264 EKARSVFDSMGEKDIVT--WSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLS 321

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           +CA LG + +GE       R  F  + F+ NAL+DMYAKCG + +   VF  +  KD++ 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHG--- 316
            N+ ++G   +G +  +F +F      G  PD      +L    +A L++ G +      
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 317 --WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
             + L+R VE   C+ +    ++ + G LD A  L   MP +                  
Sbjct: 442 CVYALKRTVEHYGCMVD----LWGRAGMLDDAYRLICDMPMR------------------ 479

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMV 433
                        P+ + + +LLS C  +   ++ E   +V+ E   + P    +Y  + 
Sbjct: 480 -------------PNAIVWGALLSGCRLVKDTQLAE---TVLKELIALEPWNAGNYVQLS 523

Query: 434 NLYGRAGLIDEA 445
           N+Y  +G  DEA
Sbjct: 524 NIYSVSGRWDEA 535


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 257/471 (54%), Gaps = 16/471 (3%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  F KT L+ +  + ++       G    + T  S+L     + ++  G  +H      
Sbjct: 253 QNGFGKTALELVLRMQEE-------GKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRA 305

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
                  +S+ L+ +Y+  G +  A  +FD+M+ +T  +  WNS+I GY + G+   A+ 
Sbjct: 306 GFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVS--WNSMIDGYVQNGDPGAAME 363

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           ++ +M +E VE    T    L ACA LG +  G  VH    +   G D  V+N+L+ MY+
Sbjct: 364 IFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYS 423

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KC  +  A  +F+ + +K L+S+N+M+ GY  +G + EA D F  M L    PD   + S
Sbjct: 424 KCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVS 483

Query: 301 I---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +   LA  S+L     +HG V+R  ++ ++ +A +L+ +Y+K G +  A  LFD M ++ 
Sbjct: 484 VIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERH 543

Query: 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           V +WN++I     H     AL  FE+M+++ + P+ +TF+ +LSAC+H G V+ G + F 
Sbjct: 544 VTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFG 603

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + YG+ P ++HY  MV+L GRA  ++EA+  I +KM  E +  V+GA+L AC +H N
Sbjct: 604 SMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFI-QKMPIEPAISVFGAMLGACRIHKN 662

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           V +GE AA ++F+L+PD+     LL  IY  A   D V RV   +  +G++
Sbjct: 663 VELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQ 713



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 142/488 (29%), Positives = 246/488 (50%), Gaps = 57/488 (11%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+      F  LL+ C     +  G ++H  +  N    N    + ++ +YA   L++E
Sbjct: 169 DGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEE 228

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A+++FD+M  R      WN++ISGYA+ G  + A+ L  +M+EEG  PD  T   +L A 
Sbjct: 229 AYKMFDRMPERDLVC--WNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAV 286

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A +G +R+G  +H  ++R GF     V  ALVDMY+KCG +  AR +FDR+  K ++S+N
Sbjct: 287 ADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWN 346

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           SM+ GY+ +G    A +IF+ M+    +   V +   L   A+   +  G  VH  + + 
Sbjct: 347 SMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQL 406

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
            +  D+ + NSLI +YSK  ++D A  +F+++  K +VSWN++I  ++++   +EA+ YF
Sbjct: 407 ELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYF 466

Query: 379 EQMERDGVLPDHLTFVSLLSACAHL----------------------------------- 403
            +M+   + PD  T VS++ A A L                                   
Sbjct: 467 CKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKC 526

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---SPV 460
           G+V    +LF +M E++     V  +  M++ YG  GL   A  +  EKM+ E    + V
Sbjct: 527 GAVHTARKLFDMMDERH-----VTTWNAMIDGYGTHGLGKAALELF-EKMKKEVIKPNEV 580

Query: 461 VWGALLYACYLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVE 516
            +  +L AC   G V  G     + +K + LEP  +H +  ++ + G A RL++  + ++
Sbjct: 581 TFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDH-YGAMVDLLGRANRLNEAWDFIQ 639

Query: 517 RMLVDRGL 524
           +M ++  +
Sbjct: 640 KMPIEPAI 647



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 217/409 (53%), Gaps = 22/409 (5%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIP---TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           A LLE C  +K      +LH+ IP    N L       +KL+ L+  FG + EA +VF  
Sbjct: 81  AILLELCTSMK------ELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQP 134

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           + ++    +  ++++ GYA     +DA++ + +M  +GV P  + F  +LK C     +R
Sbjct: 135 IEDKIDELY--HTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLR 192

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H   +  GF  + F +  +V+MYAKC  + +A  +FDR+  +DL+ +N++++GY 
Sbjct: 193 KGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYA 252

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G    A ++   M   G  PD + I SIL   A+   LRIG  +HG+ +R G E  + 
Sbjct: 253 QNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVN 312

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           ++ +L+ +YSK G +  A  +FD M  K VVSWNS+I  + ++ +   A+  F++M  + 
Sbjct: 313 VSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQ 372

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V   ++T +  L ACA LG V+ G R    ++++  +   V     ++++Y +   +D A
Sbjct: 373 VEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIA 431

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHG--NVCMGETAAQKLFELEPDN 492
            + I E ++ + + V W A++     +G  N  +      +L  ++PD+
Sbjct: 432 -AEIFENLQHK-TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS 478


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 241/447 (53%), Gaps = 10/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      +  S +  C Q   ++ G  +H+ +  +    +    + L+ +YA  G +  
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLA 375

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD  + +   +  WNSLI+GY + G Y++ +  +  M+ E  +PD  TF  +L   
Sbjct: 376 AQEVFD--TTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIF 432

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + L  I  G  +H D ++FGF  +  + N+L+D+YAKCG++     VF  +   D+IS+N
Sbjct: 433 SQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWN 492

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRR 321
           +++   +H       F +   M   G  PD   +  IL   SLL   R G ++HG++ + 
Sbjct: 493 TVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS 552

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G E ++ I N+LI +YSK G L+    +F +M +KDVV+W ++I A   + +  +AL  F
Sbjct: 553 GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAF 612

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           + ME  GVLPD + F++ + AC+H G VK G R F  M   Y + PR+EHYAC+V+L  R
Sbjct: 613 QDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLAR 672

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           +GL+ +A   I+  M  +    +WGALL AC   GN  + +  ++K+ EL  D+   + L
Sbjct: 673 SGLLAQAEEFILS-MPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           +  IY   G+ D V+ V   +  +GL+
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLK 758



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 222/445 (49%), Gaps = 27/445 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +SLL+T    K       +H LI T+ L  +   S KL+  YA       +  VF  +S 
Sbjct: 23  SSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISP 82

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            T   + WNS+I      G +  A+  Y +M E+ ++PD FTFP V+ +CA +  + +G 
Sbjct: 83  -TNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            VH  A+  GF  D ++ NAL+DMY++  D+  AR VF+ + N+D +S+NS+++GY  +G
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSI-LANASLLRI--GAQVHGWVLRRGVEWDLCIAN 331
              +A D++    + G  PD   +SS+ LA  SL+ +  G  VHG + + G+  D+ I N
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGN 261

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHEALIYFEQMERDGVLPD 389
            L+ +Y K  +L +A  +F  M  KD V+WN++I  +A    HEA +       DG +PD
Sbjct: 262 GLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPD 321

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE--HYAC--MVNLYGRAGLIDEA 445
            L+  S + AC   G ++VG+      V KY I    E    AC  ++++Y + G     
Sbjct: 322 MLSITSTIRACGQSGDLQVGK-----FVHKYLIGSGFECDTVACNILIDMYAKCG----- 371

Query: 446 YSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMG-ETAAQKLFELEPDNEHNFELLI 500
             ++  +  F+ +     V W +L+      G    G E+      E +PD+   F LL+
Sbjct: 372 -DLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSV-TFVLLL 429

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            I+     ++    +   ++  G E
Sbjct: 430 SIFSQLADINQGRGIHCDVIKFGFE 454


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 244/472 (51%), Gaps = 17/472 (3%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  +P   L    SI Q+++     G+       +SL+  C ++ +   G  +H  +   
Sbjct: 406 QAGYPGEAL----SIFQEMQ---HEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKA 458

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
            +  +  +++ L+ +Y        A  +F++M  +   A  WN+LI+G+ + G+   A+ 
Sbjct: 459 DMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVA--WNTLINGFTKCGDPRLALE 516

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           ++ +++  GV+PD  T   +L ACA L  + +G   H + ++ G   +  V  AL+DMYA
Sbjct: 517 MFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYA 576

Query: 241 KCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           KCG +  A  +F    + KD +S+N M+ GY+H+G   EA   F  M L    P+ V   
Sbjct: 577 KCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFV 636

Query: 300 SILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           +IL   S   +LR     H  ++R G      I NSLI +Y+K G+L  +   F  M  K
Sbjct: 637 TILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENK 696

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
             +SWN+++     H +   AL  F  M+   V  D ++++S+LSAC H G ++ G  +F
Sbjct: 697 GTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIF 756

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M EK+ + P +EHYACMV+L G AGL DE   +I +KM  E    VWGALL AC +H 
Sbjct: 757 QSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLI-DKMPTEPDAQVWGALLGACKMHS 815

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           NV +GE A   L +LEP N  ++ +L  IY   GR  D  R    + D GL+
Sbjct: 816 NVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLK 867



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 218/429 (50%), Gaps = 14/429 (3%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           T +    ++P+ +L N      ++L      I+  ++    G+     TF  +L+ C   
Sbjct: 81  TLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGA 140

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
                G+ +H+ I +  L  +  I + L+ +Y   G +D A +VFD+M  +   +  WN+
Sbjct: 141 LDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVAS--WNA 198

Query: 165 LISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           +ISG ++     +A+ ++ +M+ EEGVEPD  +   +  A + L  +   + +H   VR 
Sbjct: 199 MISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRR 258

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
                G V N+L+DMY+KCG++  A  +FD++  KD IS+ +M+ GY+HHG   E   + 
Sbjct: 259 CVF--GVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLL 316

Query: 284 RGMILNGFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M       + ++ ++S+LA      L  G +VH + L+ G+  D+ +A  ++ +Y+K 
Sbjct: 317 DEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKC 376

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLL 397
           G+L +A   F  +  +D+V W++ + A  +     EAL  F++M+ +G+ PD     SL+
Sbjct: 377 GELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLV 436

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           SACA + S ++G ++    V K  +   +     +V++Y R      A ++   +M ++ 
Sbjct: 437 SACAEISSSRLG-KMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLF-NRMHYK- 493

Query: 458 SPVVWGALL 466
             V W  L+
Sbjct: 494 DVVAWNTLI 502



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 195/374 (52%), Gaps = 16/374 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +S+ L+ +Y+  G +  AHQ+FDQM  +   +  W ++++GY   G Y + + L  +M+ 
Sbjct: 264 VSNSLIDMYSKCGEVKLAHQIFDQMWVKDDIS--WATMMAGYVHHGCYFEVLQLLDEMKR 321

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           + ++ ++ +    + A      +  G++VH  A++ G   D  V   +V MYAKCG++ K
Sbjct: 322 KHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKK 381

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A+  F  +  +DL+ +++ L+  +  G   EA  IF+ M   G  PD   +SS++   A 
Sbjct: 382 AKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAE 441

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S  R+G  +H +V++  +  D+ +A +L+ +Y++      A  LF+ M  KDVV+WN++
Sbjct: 442 ISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTL 501

Query: 365 IHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I+  +K  +   AL  F +++  GV PD  T VSLLSACA L  + +G   F   + K G
Sbjct: 502 INGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLG-ICFHGNIIKNG 560

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I   +     ++++Y + G +  A ++       +   V W  ++ A YLH N C  E  
Sbjct: 561 IESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVK-DEVSWNVMI-AGYLH-NGCANEAI 617

Query: 482 A----QKLFELEPD 491
           +     KL  + P+
Sbjct: 618 STFNQMKLESVRPN 631



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 237/496 (47%), Gaps = 72/496 (14%)

Query: 69  LQALDSI----IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           LQ LD +    I+  + SV N +   TET           + +E G ++H       +  
Sbjct: 313 LQLLDEMKRKHIKMNKISVVNSVLAATET-----------RDLEKGKEVHNYALQLGMTS 361

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           +  +++ ++ +YA  G + +A + F  +  R      W++ +S   + G   +A++++ +
Sbjct: 362 DIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVV--WSAFLSALVQAGYPGEALSIFQE 419

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+ EG++PD+     ++ ACA +   R+G+ +H   ++   G D  V   LV MY +C  
Sbjct: 420 MQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKS 479

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
            + A T+F+R+  KD++++N+++ G+   G    A ++F  + L+G  PD   + S+L+ 
Sbjct: 480 FMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSA 539

Query: 305 ASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVV 359
            +LL    +G   HG +++ G+E ++ +  +LI +Y+K G L  A  LF H+ +  KD V
Sbjct: 540 CALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLF-HLNKHVKDEV 598

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL------------- 403
           SWN +I  +  +   +EA+  F QM+ + V P+ +TFV++L A ++L             
Sbjct: 599 SWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACI 658

Query: 404 ----------------------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
                                 G +   E+ F  M  K  IS     +  M++ Y   G 
Sbjct: 659 IRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTIS-----WNAMLSGYAMHGQ 713

Query: 442 IDEAYSM--IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNF 496
            + A ++  ++++       V + ++L AC   G +  G    Q + E   LEP  EH +
Sbjct: 714 GEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEH-Y 772

Query: 497 ELLIKIYGNAGRLDDV 512
             ++ + G AG  D+V
Sbjct: 773 ACMVDLLGCAGLFDEV 788



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 166/316 (52%), Gaps = 16/316 (5%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WNSLI  Y+ L  +++AI  Y  M   G+EPD++TF  VLKAC G      G  +H D  
Sbjct: 95  WNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIA 154

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
                 D F+   LVDMY K G +  AR VFD++  KD+ S+N+M++G        EA +
Sbjct: 155 SRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALE 214

Query: 282 IFRGMIL-NGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           IF+ M +  G +PD V+I ++    S L        +HG+V+RR V     ++NSLI +Y
Sbjct: 215 IFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFG--VVSNSLIDMY 272

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           SK G++  A  +FD M  KD +SW +++     H    E L   ++M+R  +  + ++ V
Sbjct: 273 SKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVV 332

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--YSMIVEK 452
           + + A      ++ G+ + +  ++  G++  +     +V++Y + G + +A  + + +E 
Sbjct: 333 NSVLAATETRDLEKGKEVHNYALQ-LGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEG 391

Query: 453 MEFEASPVVWGALLYA 468
            +     VVW A L A
Sbjct: 392 RDL----VVWSAFLSA 403



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 19/252 (7%)

Query: 232 LNALVDMYAKCGDIVKARTVF-DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           LN L+ ++A+   IV+  T+  + I N  LI +NS++  Y    L  EA   ++ M   G
Sbjct: 65  LNPLLQIHARL--IVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMG 122

Query: 291 FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            +PD    + +L     A     G  +H  +  R +E D+ I   L+ +Y K G LD A 
Sbjct: 123 LEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNAR 182

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQME-RDGVLPDHLTFVSLLSACAHL 403
            +FD MP KDV SWN++I   S+     EAL  F++M+  +GV PD ++ ++L  A + L
Sbjct: 183 KVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRL 242

Query: 404 GSVKVGERLFSVMVEK--YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
             V   + +   +V +  +G+         ++++Y + G +  A+  I ++M +    + 
Sbjct: 243 EDVDSCKSIHGYVVRRCVFGVVSN-----SLIDMYSKCGEVKLAHQ-IFDQM-WVKDDIS 295

Query: 462 WGALLYACYLHG 473
           W  ++     HG
Sbjct: 296 WATMMAGYVHHG 307


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 267/485 (55%), Gaps = 19/485 (3%)

Query: 54  PTPLLTNQKAFPKTK-----LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE 108
           P  LL  +   P T      + A  ++++DL+      +      + + +  C Q K +E
Sbjct: 9   PNYLLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLE 68

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
              K+H  + ++    +  + + L+ LY   G + EA +VFD+M  +   +  W SLI+G
Sbjct: 69  DARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVS--WTSLIAG 126

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           YA+    E+AI L   M +   +P+ FTF  +LKA        +G ++H  AV+  +  D
Sbjct: 127 YAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHED 186

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            +V +AL+DMYA+CG +  A  VFD++ +K+ +S+N++++G+   G    A   F  M+ 
Sbjct: 187 VYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLR 246

Query: 289 NGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
           NGF+      SS+   +S+ R+GA      VH  +++   +      N+L+ +Y+K G +
Sbjct: 247 NGFEATHFTYSSVF--SSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSM 304

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
             A  +FD +  KD+V+WN+++ A ++     EA+ +FE+M + G+  + +TF+ +L+AC
Sbjct: 305 IDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTAC 364

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G VK G+R F +M E Y + P ++H+  +V L GRAGL++ A   I  KM  E +  
Sbjct: 365 SHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFIF-KMPIEPTAA 422

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           VWGALL AC +H N  +G+ AA  +FEL+PD+     LL  IY + G+ D   RV R++ 
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMK 482

Query: 521 DRGLE 525
             G++
Sbjct: 483 TTGVK 487


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 257/459 (55%), Gaps = 9/459 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  +   ++ V +G+ + + TFAS L +  +  ++++  ++H  I  + +  +  + S L
Sbjct: 361 DEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSAL 420

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G ++ A + F Q  N         ++ISGY   G   +A+ L+  + +EG+ P
Sbjct: 421 VDIYFKGGDVEMACKTFQQ--NTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVP 478

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           +  T   VL ACA L  +++G+++H D ++ G      V +++  MYAK G +  A   F
Sbjct: 479 NCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFF 538

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
            R+  KD + +N M+  +  +G    A D+FR M  +G   D V++S+ L   AN   L 
Sbjct: 539 RRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALY 598

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-- 367
            G ++H +V+R     D  +A++LI +YSK GKL  A  +FD M  K+ VSWNSII A  
Sbjct: 599 YGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYG 658

Query: 368 -HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
            H +  E L  F +M   G+ PDH+TF+ ++SAC H G V  G   F  M E+YGI  R+
Sbjct: 659 NHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARM 718

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           EH+ACMV+LYGRAG + EA+  I + M F      WG+LL AC LHGNV + + A++ L 
Sbjct: 719 EHFACMVDLYGRAGRLHEAFDTI-KSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLV 777

Query: 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           EL+P+N   + LL  ++  AG  + V +V  ++ ++G++
Sbjct: 778 ELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQ 816



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 204/380 (53%), Gaps = 11/380 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +++ C  L  V     +H L  +     +  I S L++LY   G I +A  +FD++
Sbjct: 179 TFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDEL 238

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WN +++GY + G++  A+  + +M    V+P+  +F  +L  CA  G++R 
Sbjct: 239 PVRDCIL--WNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRA 296

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   +R GF  D  V N ++ MY+KCG++  AR +FD +   D +++N ++ GY+ 
Sbjct: 297 GIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQ 356

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   EA  +F+ M+ +G   D +  +S L +   +  L+   +VH +++R GV +D+ +
Sbjct: 357 NGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYL 416

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
            ++L+ +Y K G ++ AC  F      DV    ++I  +     + EAL  F  + ++G+
Sbjct: 417 KSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGM 476

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +P+ LT  S+L ACA L S+K+G+ L   +++K G+    +  + +  +Y ++G +D AY
Sbjct: 477 VPNCLTMASVLPACAALASLKLGKELHCDILKK-GLENVCQVGSSITYMYAKSGRLDLAY 535

Query: 447 SMIVEKMEFEASPVVWGALL 466
                +M  + S V W  ++
Sbjct: 536 QFF-RRMPVKDS-VCWNLMI 553



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 181/324 (55%), Gaps = 9/324 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S++L +Y       +   +F ++  +  ++ PWN LI G++ LG ++ A+  +F+M  
Sbjct: 113 LGSRMLGMYVLCRSFKDVGNLFCRL--QLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLG 170

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             V PD++TFP V+KAC GL  + + + VH  A   GF  D F+ ++L+ +Y   G I  
Sbjct: 171 SNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHD 230

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILAN 304
           A+ +FD +  +D I +N ML GY+ +G    A   F+ M  +   P+ V+   + S+ A 
Sbjct: 231 AKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCAT 290

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
             ++R G Q+HG V+R G E D  +AN++I +YSK G L  A  +FD MPQ D V+WN +
Sbjct: 291 RGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGL 350

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++    EA+  F+ M   GV  D +TF S L +    GS+K  + + S +V ++G
Sbjct: 351 IAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIV-RHG 409

Query: 422 ISPRVEHYACMVNLYGRAGLIDEA 445
           +   V   + +V++Y + G ++ A
Sbjct: 410 VPFDVYLKSALVDIYFKGGDVEMA 433


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 255/456 (55%), Gaps = 10/456 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           + DL+      +      + + +  C Q K ++   K+H  + ++    +  + + L+ L
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHL 95

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G + EAH+VFD+M N+   +  W SLI+GYA+     +AI L   M +   +P+ F
Sbjct: 96  YCKCGSVVEAHKVFDKMRNKDMVS--WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGF 153

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF  +LKA        +G ++H  AV+  +  D +V +AL+DMYA+CG +  A  VFD++
Sbjct: 154 TFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGA 312
            +K+ +S+N++++G+   G    A  +F  M  NGF+      SSI   LA    L  G 
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGK 273

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            VH  +++   +    + N+++ +Y+K G +  A  +F+ +  KD+V+WNS++ A ++  
Sbjct: 274 WVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYG 333

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EA+ +FE+M + G+  + ++F+ +L+AC+H G VK G+  F  M+++Y + P +EHY
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHY 392

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
             +V+L GRAGL++ A   I  KM  E +  VWGALL AC +H N  +G+ AA  +F+L+
Sbjct: 393 VTVVDLLGRAGLLNYALVFIF-KMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD 451

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           PD+     LL  IY + G  D   RV +M+   G++
Sbjct: 452 PDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVK 487


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/406 (34%), Positives = 240/406 (59%), Gaps = 12/406 (2%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           +++ + +KL+ L  +   I   H +F  +S      F +NS+I   ++L      +A Y 
Sbjct: 39  RSRSLLTKLITLACSARAIAYTHLLF--LSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYR 96

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M    V P  +TF  V+K+CA L  +++G+ VH  AV  GFG D +V  ALV  Y+KCG
Sbjct: 97  RMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCG 156

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
           D+  AR VFDR+  K ++++NS+++G+  +GL  +A  +F  M  +GF+PD     S+L 
Sbjct: 157 DMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLS 216

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             A    + +G+ VH +++  G++ ++ +  +LI +YS+ G + +A  +FD M + +V +
Sbjct: 217 ACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA 276

Query: 361 WNSIIHA---HSKDHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           W ++I A   H    +A+  F +ME D G +P+++TFV++LSACAH G V+ G  ++  M
Sbjct: 277 WTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRM 336

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGN 474
            E Y + P VEH+ C+V++ GRAG +DEAY  I  ++      +P +W A+L AC +H N
Sbjct: 337 TESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRN 396

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV-ERML 519
             +G   A++L  LEP+N  +  +L  IY  +G+ D+V  + +RM+
Sbjct: 397 YDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMM 442



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 197/414 (47%), Gaps = 56/414 (13%)

Query: 54  PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL 113
           P   L N      +KL+     +      + + ++    TF S++++C  L A++ G  +
Sbjct: 70  PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGV 129

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H     +    +  + + L+  Y+  G ++ A QVFD+M  ++  A  WNSL+SG+ + G
Sbjct: 130 HCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVA--WNSLVSGFEQNG 187

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
             EDAI +++QM E G EPD  TF  +L ACA  G I +G  VH   V  G   +  +  
Sbjct: 188 LAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGT 247

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFD 292
           AL+++Y++CGD+ KAR VFD++   ++ ++ +M++ Y  HG   +A D+F  M  + G  
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSI 307

Query: 293 PDP---VAISSILANASLLRIGAQVH-----GWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           P+    VA+ S  A+A L+  G  V+      + L  GVE  +CI + L     + G LD
Sbjct: 308 PNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDML----GRAGFLD 363

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA--- 401
                                       EA  + +Q++  G       + ++L AC    
Sbjct: 364 ----------------------------EAYRFIQQLDATGNATAPALWTAMLGACKMHR 395

Query: 402 --HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
              LG V++ +RL ++  E  G      H+  + N+Y  +G  DE  S I ++M
Sbjct: 396 NYDLG-VEIAKRLIALEPENPG------HHVMLSNIYALSGKTDEV-SHIRDRM 441


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 265/482 (54%), Gaps = 46/482 (9%)

Query: 77  QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH------RLIPTNLLRKNKGISS 130
           Q L     +G  ++ E + ++L  C   +A   G ++H      R +P+  LR      +
Sbjct: 229 QPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLR------T 282

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF---QMEE 187
           +L+ LY     + +AH VFD+M  R   +  W ++IS Y++ G    A+ L+F   ++  
Sbjct: 283 RLIVLYTKCDSLGDAHNVFDEMPERNVVS--WTAMISAYSQRGYASQALNLFFADVKISL 340

Query: 188 EGV------------------EPDQFTFPRVLKAC-AGLGLIRVGEKVHLDAVRFGFGFD 228
            GV                  EP++FTF  VL +C + LG I +G ++H   ++  +   
Sbjct: 341 TGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFI-LGRQIHSLIIKLNYEDH 399

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            FV ++L+DMYAK G I +ARTVF+ +  +D++S  ++++GY   GL  EA ++FR +  
Sbjct: 400 VFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQG 459

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G   + V  + +L   S    L +G QVH  VLR  +   + + NSLI +YSK G L  
Sbjct: 460 EGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTY 519

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERDGVLPDHLTFVSLLSACA 401
           +  +FD M ++ V+SWN+++  +SK     E L  F  M E   V PD +T +++LS C+
Sbjct: 520 SRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCS 579

Query: 402 HLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           H G    G  +F+ M   K  + P++EHY C+V+L GR+G ++EA+  I +KM FE +  
Sbjct: 580 HGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFI-KKMPFEPTAA 638

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           +WG+LL AC +H NV +GE A Q+L E+EP N  N+ +L  +Y +AGR +DV  +  +++
Sbjct: 639 IWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLML 698

Query: 521 DR 522
            +
Sbjct: 699 KK 700


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/408 (35%), Positives = 232/408 (56%), Gaps = 8/408 (1%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           +++ + +KLL L    G I    ++F  +S+  +F F  NSLI   ++ G   DA+  Y 
Sbjct: 40  RSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLF--NSLIKASSKFGFSLDAVLFYR 97

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M    + P  +TF  V+KACA L L+ +G  VH      G+  D FV  AL+  YAK  
Sbjct: 98  RMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSC 157

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
               AR VFD +  + ++++NSM++GY  +GL  EA ++F  M  +  +PD     S+L+
Sbjct: 158 TPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLS 217

Query: 304 NASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             S L     G  +H  ++  G+  ++ +A SL+ ++S+ G + +A  +F  M + +VV 
Sbjct: 218 ACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVL 277

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W ++I     H    EA+  F +M+  GV+P+ +TFV++LSACAH G +  G  +F+ M 
Sbjct: 278 WTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMK 337

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           ++YG+ P VEH+ CMV+++GR GL++EAY  +      E  P VW A+L AC +H N  +
Sbjct: 338 QEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDL 397

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           G   A+ L   EP+N  ++ LL  +Y  AGR+D VE V  +++ RGL+
Sbjct: 398 GVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLK 445



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 175/375 (46%), Gaps = 56/375 (14%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I   T TF S+++ C  L  +  G  +H  +  +    +  + + L+  YA       A 
Sbjct: 104 IVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVAR 163

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VFD+M  R+  A  WNS+ISGY + G   +A+ ++ +M E  VEPD  TF  VL AC+ 
Sbjct: 164 KVFDEMPQRSIVA--WNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQ 221

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           LG +  G  +H   V  G   +  +  +LV+M+++CGD+ +AR VF  +   +++ + +M
Sbjct: 222 LGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAM 281

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRR-- 321
           ++GY  HG  VEA ++F  M   G  P+    VA+ S  A+A L+  G  V   + +   
Sbjct: 282 ISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYG 341

Query: 322 ---GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378
              GVE  +C+ +    ++ + G L+                            EA  + 
Sbjct: 342 VVPGVEHHVCMVD----MFGRGGLLN----------------------------EAYQFV 369

Query: 379 EQMERDGVLPDHLTFVSLLSACA-----HLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           + +  D ++P    + ++L AC       LG V+V E L +   E  G      HY  + 
Sbjct: 370 KGLNSDELVP--AVWTAMLGACKMHKNFDLG-VEVAENLINAEPENPG------HYVLLS 420

Query: 434 NLYGRAGLIDEAYSM 448
           N+Y  AG +D   S+
Sbjct: 421 NMYALAGRMDRVESV 435



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 134/274 (48%), Gaps = 17/274 (6%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +R  ++ H   V  G      +L  L+ +    G I   R +F  + + D   +NS++  
Sbjct: 23  LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA 82

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
               G  ++A   +R M+L+   P     +S++   A+ SLL IG  VH  V   G   D
Sbjct: 83  SSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASD 142

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
             +  +LI  Y+K      A  +FD MPQ+ +V+WNS+I  + ++   +EA+  F +M  
Sbjct: 143 SFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE 202

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
             V PD  TFVS+LSAC+ LGS+  G  L   +V   GI+  V     +VN++ R G + 
Sbjct: 203 SRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGS-GITMNVVLATSLVNMFSRCGDVG 261

Query: 444 EA----YSMIVEKMEFEASPVVWGALLYACYLHG 473
            A    YSMI      E + V+W A++    +HG
Sbjct: 262 RARAVFYSMI------EGNVVLWTAMISGYGMHG 289



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 39/304 (12%)

Query: 49  YPKSSPTPLLTNQ--KAFPKTKLQALDSIIQDLESSVQNGITVQ---------------- 90
           Y KS  TP +  +     P+  + A +S+I   E   QNG+  +                
Sbjct: 153 YAKSC-TPRVARKVFDEMPQRSIVAWNSMISGYE---QNGLANEAVEVFNKMRESRVEPD 208

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TF S+L  C QL +++ G  LH  I  + +  N  +++ L+ +++  G +  A  VF 
Sbjct: 209 SATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFY 268

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M         W ++ISGY   G   +A+ ++ +M+  GV P+  TF  VL ACA  GLI
Sbjct: 269 SMIEGNVVL--WTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLI 326

Query: 211 RVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKARTVFDRIGNKDLIS--YNSM 266
             G  V   +++  +G    V +   +VDM+ + G + +A      + + +L+   + +M
Sbjct: 327 DEGRSV-FASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAM 385

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDP------VAISSILANASLLRIGAQVHGWVLR 320
           L     H    + FD+   +  N  + +P      V +S++ A A  +     V   +++
Sbjct: 386 LGACKMH----KNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQ 441

Query: 321 RGVE 324
           RG++
Sbjct: 442 RGLK 445


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 263/505 (52%), Gaps = 75/505 (14%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG------------ 140
           T  ++L +C  ++ +  G K+H  +  + L     +++ LL +YA  G            
Sbjct: 147 TLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRM 206

Query: 141 -------------------LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
                              L+D A   F+QM  R   +  WN++ISGY + G   +A+ +
Sbjct: 207 KLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVS--WNAMISGYNQHGFDREALDI 264

Query: 182 YFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           + +M  +   +PD+FT    L ACA L  +++G+++H   +R  F   G V NAL+ MY+
Sbjct: 265 FSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYS 324

Query: 241 KCG---------------------------------DIVKARTVFDRIGNKDLISYNSML 267
           K G                                 DI  AR +FD +  +D++++ +M+
Sbjct: 325 KSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMI 384

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVE 324
            GY+ +G   +A ++FR MI  G  P+   ++++L+ +S L     G Q+H    R G  
Sbjct: 385 VGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNA 444

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA---HSKDHEALIYFEQ 380
             + ++N+LI +Y+K G ++ A W+F+ +  ++D ++W S+I A   H    EAL  FE+
Sbjct: 445 SSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFER 504

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M  +G+ PDH+T+V +LSAC H+G V+ G   +++M   + I P   HYACM++L+GRAG
Sbjct: 505 MLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAG 564

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
           L+ EA++ I E M  E   + WG+LL +C +H NV + E AA++L  +EP+N   +  L 
Sbjct: 565 LLQEAHAFI-ENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALA 623

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            +Y   G+ ++   + + + D+G++
Sbjct: 624 NVYSACGQWENAANIRKSMKDKGVK 648



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 236/520 (45%), Gaps = 112/520 (21%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           +E+S    +T  ++ + S L+   + K    G  +H  I    L     + + L+  YA 
Sbjct: 1   METSSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAK 60

Query: 139 FGLIDEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGY 169
            G I +AH+VFD+M  ++ F++                              W ++I GY
Sbjct: 61  TGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGY 120

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            ++G++E+AI ++ +M  + V P QFT   VL +CA +  + +G KVH   V+ G     
Sbjct: 121 NQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYI 180

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIG-------------------------------NK 258
            V N+L++MYAK GD V A+ VFDR+                                 +
Sbjct: 181 SVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIER 240

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-PDPVAISSIL---ANASLLRIGAQV 314
           D++S+N+M++GY  HG   EA DIF  M+++    PD   ++S L   AN   L++G Q+
Sbjct: 241 DVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQI 300

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKD---------------------------------G 341
           H  ++R   +    + N+LI +YSK                                  G
Sbjct: 301 HAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLG 360

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLS 398
            ++ A  +FD +  +DVV+W ++I  + +   + +A+  F  M ++G  P++ T  ++LS
Sbjct: 361 DINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLS 420

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
             + L S+  G ++ +    + G +  V     ++ +Y ++G I++A   +   + ++  
Sbjct: 421 VSSSLASLDHGRQIHAS-ATRSGNASSVSVSNALITMYAKSGSINDA-RWVFNLIHWKRD 478

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDN 492
            + W +++ A   HG   +GE A   LFE      ++PD+
Sbjct: 479 TITWTSMIIALAQHG---LGEEALT-LFERMLENGIKPDH 514



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
             S ++ G      T A++L     L +++HG ++H     +    +  +S+ L+ +YA 
Sbjct: 400 FRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAK 459

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G I++A  VF+ +  +      W S+I   A+ G  E+A+ L+ +M E G++PD  T+ 
Sbjct: 460 SGSINDARWVFNLIHWKRD-TITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYV 518

Query: 199 RVLKACAGLGLIRVG 213
            VL AC  +GL+  G
Sbjct: 519 GVLSACTHVGLVEQG 533


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 228/391 (58%), Gaps = 9/391 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +D   QVFD+M  R      W ++ISG ++   YED++ L+ QM    +EP+  T+  
Sbjct: 37  GDLDTGRQVFDEMLERNVIT--WTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLS 94

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
            L AC+GL  +  G ++H    + G   +  + +AL+D+Y+KCG +  AR VF+     D
Sbjct: 95  SLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELD 154

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHG 316
            +S   +L G+  +G   EA + F  M+  G + DP  +S++L    +   L +G Q+H 
Sbjct: 155 EVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHS 214

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
            V++R +  +  + N LI +YSK G+L ++  +F+ +  ++ VSWNS+I A   H     
Sbjct: 215 LVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFR 274

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  +E+M ++G +P  LTF+SLL AC+H+G V  G +    M + YGISPR EHYAC+V
Sbjct: 275 ALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVV 334

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++ GRAGL++EA S+I E++  +   ++W ALL AC + G+  +G+ AA++L  LEP   
Sbjct: 335 DMLGRAGLLNEAKSLI-ERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKP 393

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             + LL  IY + GR D+  R  + + + G+
Sbjct: 394 APYVLLANIYSSKGRWDERARTIKRMKEMGV 424



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 171/356 (48%), Gaps = 39/356 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S L  C  L+A+E G ++H L+    ++ N  I S L+ LY+  G +++A +VF+  
Sbjct: 91  TYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESA 150

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 +     ++ G+ + G  E+AI  + +M   G E D      VL AC     + +
Sbjct: 151 VELDEVSM--TVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGL 208

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++   G + FV N L++MY+KCG++ ++  VF+ +  ++ +S+NSM+  +  
Sbjct: 209 GKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFAR 268

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           HG    A  ++  MI  G  P  +   S+L   S        H  ++ +G+++      S
Sbjct: 269 HGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACS--------HVGLVDKGMKF----LKS 316

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392
           +  VY    + +    + D + +  +++          + ++LI     ER  + PD L 
Sbjct: 317 MTKVYGISPRAEHYACVVDMLGRAGLLN----------EAKSLI-----ERLSIKPDVLI 361

Query: 393 FVSLLSACAHLGSVKVG----ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           + +LL AC+  G  ++G    E+L  +++E    +P    Y  + N+Y   G  DE
Sbjct: 362 WQALLGACSIRGDTEIGKYAAEQL--LLLEPKKPAP----YVLLANIYSSKGRWDE 411



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 136/254 (53%), Gaps = 11/254 (4%)

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D    N +V  + + GD+   R VFD +  +++I++ ++++G   + +  ++  +F  M 
Sbjct: 22  DTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMR 81

Query: 288 LNGFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
               +P+ +  +SS+ A + L  L  G Q+HG V + G++ +LCI ++L+ +YSK G L+
Sbjct: 82  CGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLE 141

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +F+   + D VS   I+   ++   + EA+ +F +M   G   D     ++L AC 
Sbjct: 142 DARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACG 201

Query: 402 HLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
              S+ +G+++ S+++++  G +P V +   ++N+Y + G + E+   +   +    S V
Sbjct: 202 VDTSLGLGKQIHSLVIKRSLGSNPFVGN--GLINMYSKCGELQESIK-VFNGLTCRNS-V 257

Query: 461 VWGALLYACYLHGN 474
            W +++ A   HG+
Sbjct: 258 SWNSMIAAFARHGD 271



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 97/187 (51%), Gaps = 4/187 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G  V     +++L  C    ++  G ++H L+    L  N  + + L+ +Y+  G +
Sbjct: 182 VNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGEL 241

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            E+ +VF+ ++ R + +  WNS+I+ +A  G+   A+ LY +M +EG  P   TF  +L 
Sbjct: 242 QESIKVFNGLTCRNSVS--WNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLH 299

Query: 203 ACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           AC+ +GL+  G K      + +G          +VDM  + G + +A+++ +R+  K D+
Sbjct: 300 ACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDV 359

Query: 261 ISYNSML 267
           + + ++L
Sbjct: 360 LIWQALL 366


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 243/479 (50%), Gaps = 47/479 (9%)

Query: 53  SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIK 112
           +P+ +L NQ           D  I    S +  G+     T+  +L+ C  L A+E G++
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           +H       L  +  + + L+  YA  G++ EA ++F  MS+R   A  WN++I+G +  
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA--WNAMIAGCSLY 188

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G  +DA+ L  QM+EEG+ P+  T   VL  C  L                         
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL------------------------- 223

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
                        + AR +FD +G ++ +S+++M+ GY+    + EA DIFR M L+G D
Sbjct: 224 -------------LYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGID 270

Query: 293 PDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           PD   +  +L   S    L+ G   HG+++ RG   D  I N+LI +YSK GK+  A  +
Sbjct: 271 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 330

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F+ M + D+VSWN++I     H    EAL  F  +   G+ PD +TF+ LLS+C+H G V
Sbjct: 331 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 390

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G   F  M   + I PR+EH  CMV++ GRAGLIDEA+  I   M FE    +W ALL
Sbjct: 391 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFI-RNMPFEPDVRIWSALL 449

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            AC +H N+ +GE  ++K+  L P++  NF LL  IY  AGR DD   +     D GL+
Sbjct: 450 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 205/463 (44%), Gaps = 76/463 (16%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            +  LLE C Q K++    K+H+    N    +  +  KL RLY +   +  A ++FD++
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N +     WN +I  YA  G ++ AI LY  M   GV P+++T+P VLKAC+GL  I  
Sbjct: 70  PNPSVIL--WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A  FG   D FV  ALVD YAKCG +V+A+ +F  + ++D++++N+M+ G   
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           +GL  +A  +   M   G  P+   I  +L     L                        
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL------------------------ 223

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD 389
              +Y++         +FD M  ++ VSW+++I  +       EAL  F  M+  G+ PD
Sbjct: 224 ---LYARK--------IFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPD 272

Query: 390 HLTFVSLLSACAHLGSVKVG---------------ERLFSVMVEKYGISPRVE------- 427
             T + +L AC+HL +++ G                 + + +++ Y    ++        
Sbjct: 273 LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFN 332

Query: 428 --------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCM 477
                    +  M+  YG  GL  EA  +  + +     P  + +  LL +C   G V  
Sbjct: 333 RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVME 392

Query: 478 GE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           G     A  + F + P  EH    ++ I G AG +D+     R
Sbjct: 393 GRLWFDAMSRDFSIVPRMEHCI-CMVDILGRAGLIDEAHHFIR 434


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 238/416 (57%), Gaps = 9/416 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G+++H L+  + +     + + L+ +YA  G +D A  VF+    R +    W+++I+GY
Sbjct: 239 GVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSIT--WSAMITGY 296

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           ++ G  E A+ ++ QM   G  P +FT   VL AC+ +G +  G++ H   V+ GF    
Sbjct: 297 SQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQV 356

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           +V +ALVDMYAKCG I  A+  F++    D++ + +M+TG++ +G   +A  ++  M   
Sbjct: 357 YVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKE 416

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G  P+ + I+S+L   A  + L  G Q+H  +L+ G      + ++L  +YSK G L+  
Sbjct: 417 GVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDG 476

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  MP +DV++WNSII   S++   ++A+  FE+M+ +G  PD +TF+++L AC+H+
Sbjct: 477 MVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHM 536

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G   F  M++ YG++PR++HYACMV++  RAG++ EA   I E +  +    +W 
Sbjct: 537 GLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFI-ESITIDHGTCLWR 595

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            +L AC    +  +G  A +KL +L   +   + LL  IY    + +DVERV  ++
Sbjct: 596 IVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAAQRKWNDVERVRYLM 651



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 224/446 (50%), Gaps = 52/446 (11%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
            N  +S+ LL +Y   GLI +A  VFD+M +R   +  W ++++GYA     ++A  L+ 
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVS--WAAMVAGYAARKCSQEAFELFR 208

Query: 184 QMEEE-GVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYA 240
           QM  E  +  ++F    VL A +  LGL  +G +VH   V+ G  GF   V N+LV MYA
Sbjct: 209 QMLGECPLHKNEFVATAVLSAISVPLGL-PMGVQVHGLVVKDGMVGFVS-VENSLVTMYA 266

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           K G +  A  VF+    ++ I++++M+TGY  +G    A  +F  M   GF P    +  
Sbjct: 267 KAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVG 326

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L   ++   L  G Q HG +++ G E  + + ++L+ +Y+K G +  A   F+   + D
Sbjct: 327 VLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELD 386

Query: 358 VVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +V W +++  H ++ E   AL+ + +M+++GV P+ LT  SLL ACA L +++ G++L +
Sbjct: 387 IVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHT 446

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDE--------------AYSMIV---------- 450
            ++ K+G        + +  +Y + G +++              A++ I+          
Sbjct: 447 QIL-KFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGN 505

Query: 451 ------EKMEFEAS---PVVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFEL 498
                 E+M+ E +   PV +  +L AC   G V  G T  + +   + L P  +H +  
Sbjct: 506 DAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDH-YAC 564

Query: 499 LIKIYGNAGRLDDVER-VERMLVDRG 523
           ++ I   AG L + +  +E + +D G
Sbjct: 565 MVDILSRAGMLSEAKDFIESITIDHG 590



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 14/268 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   +L  C  +  +  G + H L+          + S L+ +YA  G I +A + F+Q 
Sbjct: 323 TLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQF 382

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S        W ++++G+ + GE+E A+ LY +M++EGV P+  T   +L+ACAGL  +  
Sbjct: 383 SELDIVL--WTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEP 440

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++FGFG    V +AL  MY+KCG++     VF R+ ++D+I++NS+++G+  
Sbjct: 441 GKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQ 500

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           +G   +A ++F  M L G  PDPV   ++L   S   +G    GW   R          S
Sbjct: 501 NGRGNDAINLFEEMKLEGTAPDPVTFINVLCACS--HMGLVDRGWTYFR----------S 548

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVS 360
           +I  Y    +LD    + D + +  ++S
Sbjct: 549 MIKDYGLTPRLDHYACMVDILSRAGMLS 576



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--LDQACWLFDHMP--QKD 357
           L  AS  R G  +H W L+ G      ++NSLI  YS   +  L  A  +F  +P   +D
Sbjct: 22  LRRASRPRDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARD 81

Query: 358 VVSWNSIIH--AHSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           V SWNS+++  +H +   AL +F  M     +LP   +F +  +A A   S   G  + +
Sbjct: 82  VASWNSLLNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHA 141

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +  +    S  V     ++N+Y + GLI +A  ++ ++M    + V W A++
Sbjct: 142 LACKLPSASSNVFVSTALLNMYCKLGLIPDA-QLVFDEMPHR-NEVSWAAMV 191


>gi|293331543|ref|NP_001169748.1| uncharacterized protein LOC100383629 [Zea mays]
 gi|224031397|gb|ACN34774.1| unknown [Zea mays]
          Length = 546

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 243/460 (52%), Gaps = 13/460 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL---HRLIPTNLLRKNKGISS 130
           ++++ + S+          T  ++L  C +         L   H L  +  L     + +
Sbjct: 41  ALLRRMLSAAPGAAACDHATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGN 100

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            L+  Y        A +VFD M++R      W +++SG A    Y ++++L+ QM    V
Sbjct: 101 ALITAYFECSSPGSAERVFDGMADRNVIT--WTAMVSGMARAERYSESLSLFRQMRR-AV 157

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           + ++ ++   L ACAG    R G+++H  AV+ G   D  V + L+DMY+KCG +  A  
Sbjct: 158 DANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALR 217

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASL 307
           VF    + D +S   +L G+  +GL  EAF +F  M+  G   D   +S++L     ++ 
Sbjct: 218 VFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAP 277

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
             +G Q+H   ++R    +  + N LI +YSK G+L ++  +FD  P K+ V+WNSII A
Sbjct: 278 FALGKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAA 337

Query: 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
              H    E    FE ME DGV P  +TF+SLL  C+H+GS + G  +   M  KYGI P
Sbjct: 338 YARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHP 397

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
           +VEHYAC+V++ GRA  +D+A + I E   F+ S ++W +L+ AC  H N  +GE AA+K
Sbjct: 398 KVEHYACVVDMLGRASQLDDAKAFI-EDGPFKDSALLWQSLMGACSFHKNSGVGECAAEK 456

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           L  L+PD    + LL  +Y + GR DD  R+ + +  RGL
Sbjct: 457 LLLLDPDCTAAYVLLSNVYSSEGRWDDRARIMKRMRARGL 496



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 107/220 (48%), Gaps = 17/220 (7%)

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPD 294
           MY +CG    A  VFD +  +D +S+NS+L+         +A  + R M+         D
Sbjct: 1   MYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASAS---ATDALALLRRMLSAAPGAAACD 57

Query: 295 PVAISSILANASLLRIGA------QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
              ++++L+  +    G        VHG     G++ ++ + N+LI  Y +      A  
Sbjct: 58  HATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFECSSPGSAER 117

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +FD M  ++V++W +++   ++     E+L  F QM R  V  +  ++ S L ACA   +
Sbjct: 118 VFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMRR-AVDANRASYSSSLLACAGSRA 176

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            + G+++  + V K G+   +   + ++++Y + GL+++A
Sbjct: 177 AREGQQIHGLAV-KAGLETDLHVESELMDMYSKCGLMEDA 215


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 248/449 (55%), Gaps = 11/449 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +N  +    + +  L     +K    G++LH L   + L  N  +++ +L +Y   G + 
Sbjct: 352 KNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALV 411

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF-QMEEEGVEPDQFTFPRVLK 202
           EA  +FD+M  R   +  WN++I+   E  E E     +F  M    +EPD+FT+  VLK
Sbjct: 412 EASGLFDEMEIRDPVS--WNAIITA-CEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLK 468

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAG      G +VH   ++ G G   FV +ALVDMY+KCG + +A  +  R+  + ++S
Sbjct: 469 ACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVS 528

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N++++G+       ++   F  M+  G +PD    +++L   AN + + +G Q+H  ++
Sbjct: 529 WNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMI 588

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  D+ I ++L+ +YSK G +  +  +F   P++D V+WN++I     H    EAL 
Sbjct: 589 KLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALE 648

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M  + + P+H TFVS+L AC+H+G+ K G   F  M   Y + P++EHY+CMV++ 
Sbjct: 649 LFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDIL 708

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+G ++EA  +I + M FEA  ++W  LL  C + GNV + E AA  L +L+P++   +
Sbjct: 709 GRSGQVEEALRLI-QDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAY 767

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  IY +AG    V ++ + +    L+
Sbjct: 768 TLLSNIYADAGMWQQVSKIRQTMRSHNLK 796



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 222/428 (51%), Gaps = 39/428 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T A  L+ C  L+    GI++H +        +    S L+ +YA    ++++
Sbjct: 152 GVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDS 211

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF ++ ++   +  W++ I+G  +  +    + L+ +M+ +G+   Q T+  V ++CA
Sbjct: 212 LDVFSELPDKNWIS--WSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCA 269

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL   R+G ++H  A++  FG D  V  A +DMYAKC ++  A  +F  + + +L SYN+
Sbjct: 270 GLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNA 329

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRG 322
           M+ GY  +    +AF +F  +  N F  D V++S  L+ A++++    G Q+HG  ++  
Sbjct: 330 MIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSN 389

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +  ++C+AN+++ +Y K G L +A  LFD M  +D VSWN+II A   +  + + L +F 
Sbjct: 390 LSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFG 449

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE------KYGISPRVEHYACMV 433
            M R  + PD  T+ S+L ACA       G+R FS  +E      K G+  ++   + +V
Sbjct: 450 AMLRSKMEPDEFTYGSVLKACA-------GQRAFSNGMEVHGRIIKSGMGLKMFVGSALV 502

Query: 434 NLYGRAGLIDEAYSMIVEKMEF---EASPVVWGALLYACYLHGNVCMGETAAQKLFE--- 487
           ++Y + G+++EA     EK+ +   E + V W A++    L          +Q+ F    
Sbjct: 503 DMYSKCGMMEEA-----EKIHYRLEEQTMVSWNAIISGFSLQKK----SEDSQRFFSHML 553

Query: 488 ---LEPDN 492
              +EPDN
Sbjct: 554 EMGVEPDN 561



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 210/410 (51%), Gaps = 15/410 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI V   T+AS+  +C  L A   G +LH          +  + +  L +YA    + 
Sbjct: 251 RKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMS 310

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A+++F  + +    ++  N++I GYA   +   A  L+ Q+++     D+ +    L A
Sbjct: 311 DAYKLFSLLPDHNLQSY--NAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSA 368

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A +     G ++H  A++     +  V NA++DMY KCG +V+A  +FD +  +D +S+
Sbjct: 369 AAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSW 428

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLR 320
           N+++T    +    +    F  M+ +  +PD     S+L   +  R    G +VHG +++
Sbjct: 429 NAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIK 488

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIY 377
            G+   + + ++L+ +YSK G +++A  +   + ++ +VSWN+II   S   K  ++  +
Sbjct: 489 SGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRF 548

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F  M   GV PD+ T+ ++L  CA+L +V +G+++ + M+ K  +   V   + +V++Y 
Sbjct: 549 FSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMI-KLELLSDVYITSTLVDMYS 607

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           + G + +  S+++ +   +   V W A++     HG   +GE A + LFE
Sbjct: 608 KCGNMHD--SLLMFRKAPKRDSVTWNAMICGFAYHG---LGEEALE-LFE 651



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 212/440 (48%), Gaps = 45/440 (10%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +TF+ + + C   +A++ G + H  +  +       +++ L+++Y     ++ A++VF++
Sbjct: 25  KTFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEE 84

Query: 152 MSNRTAFAF------------------------------PWNSLISGYAELGEYEDAIAL 181
           M  R   ++                               WNSLISGY + G+ + +IA+
Sbjct: 85  MPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAV 144

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           + +M + GV  D  T    LK C+ L    +G ++H  AV+ GF +D    +ALVDMYAK
Sbjct: 145 FLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAK 204

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           C  +  +  VF  + +K+ IS+++ + G + +  L+    +F+ M   G        +S+
Sbjct: 205 CNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASV 264

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
               A  S  R+G Q+H   L+     D+ +  + + +Y+K   +  A  LF  +P  ++
Sbjct: 265 FRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNL 324

Query: 359 VSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            S+N++I  ++++    +A   F Q++++    D ++    LSA A +     G +L  +
Sbjct: 325 QSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGL 384

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            + K  +S  +     ++++YG+ G + EA S + ++ME    PV W A++ AC    N 
Sbjct: 385 AI-KSNLSSNICVANAILDMYGKCGALVEA-SGLFDEMEIR-DPVSWNAIITAC--EQNE 439

Query: 476 CMGET----AAQKLFELEPD 491
             G+T     A    ++EPD
Sbjct: 440 SEGKTLSHFGAMLRSKMEPD 459



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+     T+A++L+TC  L  V  G ++H  +    L  +  I+S L+ +Y+  G +
Sbjct: 553 LEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNM 612

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            ++  +F +   R +    WN++I G+A  G  E+A+ L+  M  E ++P+  TF  VL+
Sbjct: 613 HDSLLMFRKAPKRDSVT--WNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLR 670

Query: 203 ACAGLGLIRVG 213
           AC+ +G  + G
Sbjct: 671 ACSHVGNAKKG 681


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 257/455 (56%), Gaps = 13/455 (2%)

Query: 77  QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
            DLE S    I V    + +LL+ C   K +  G  +H  +  ++ R +  +++ LL +Y
Sbjct: 40  NDLEGSY---IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMY 96

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G ++EA +VFD+M  R      W +LISGY++     DA+ L+ QM   G  P++FT
Sbjct: 97  AKCGSLEEARKVFDKMPERDFVT--WTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFT 154

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
              V+KA A       G ++H   V+ GF  +  V +AL+D+Y + G +  A+ VFD + 
Sbjct: 155 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 214

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
           +++ +S+N+++ G+       +A ++F+GM+  GF P   + +S+    S    L  G  
Sbjct: 215 SRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKW 274

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
           VH ++++ G +      N+L+ +Y+K G +  A  +FD + ++DVVSWNS++ A   H  
Sbjct: 275 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 334

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
            +EA+ +FE+M R G+ P+ ++F+S+L+AC+H G +  G   + +M +K GI     HY 
Sbjct: 335 GNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELM-KKDGIVLEAWHYV 393

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
            +V+L GRAG ++ A   I E+M  E +  +W ALL AC +H N  +G  AA+ +FEL+P
Sbjct: 394 TIVDLLGRAGDLNRALRFI-EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDP 452

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           D+     +L  IY + GR +D  RV + + + G++
Sbjct: 453 DDPGPHVILYNIYASGGRWNDAARVRKKMKESGVK 487


>gi|413917687|gb|AFW57619.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 611

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 243/460 (52%), Gaps = 13/460 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL---HRLIPTNLLRKNKGISS 130
           ++++ + S+          T  ++L  C +         L   H L  +  L     + +
Sbjct: 106 ALLRRMLSAAPGAAACDHATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGN 165

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            L+  Y        A +VFD M++R      W +++SG A    Y ++++L+ QM    V
Sbjct: 166 ALITAYFECSSPGSAERVFDGMADRNVIT--WTAMVSGMARAERYSESLSLFRQMRR-AV 222

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           + ++ ++   L ACAG    R G+++H  AV+ G   D  V + L+DMY+KCG +  A  
Sbjct: 223 DANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALR 282

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASL 307
           VF    + D +S   +L G+  +GL  EAF +F  M+  G   D   +S++L     ++ 
Sbjct: 283 VFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAP 342

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
             +G Q+H   ++R    +  + N LI +YSK G+L ++  +FD  P K+ V+WNSII A
Sbjct: 343 FALGKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAA 402

Query: 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
              H    E    FE ME DGV P  +TF+SLL  C+H+GS + G  +   M  KYGI P
Sbjct: 403 YARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHP 462

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
           +VEHYAC+V++ GRA  +D+A + I E   F+ S ++W +L+ AC  H N  +GE AA+K
Sbjct: 463 KVEHYACVVDMLGRASQLDDAKAFI-EDGPFKDSALLWQSLMGACSFHKNSGVGECAAEK 521

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           L  L+PD    + LL  +Y + GR DD  R+ + +  RGL
Sbjct: 522 LLLLDPDCTAAYVLLSNVYSSEGRWDDRARIMKRMRARGL 561



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 187/412 (45%), Gaps = 48/412 (11%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTN-----------LLRKNKGISSKLLRLYATFGLI 142
            + LL  C +   +  G  LH ++  N            L+    + + L+ +Y   G  
Sbjct: 14  LSGLLARCGRAGDLRLGTSLHAIVAKNPSHFRLCPRRSCLQHVVVVWNSLVAMYGRCGCR 73

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---EEEGVEPDQFTFPR 199
            +A +VFD+M+ R + +  WNSL+S  A      DA+AL  +M          D  T   
Sbjct: 74  GDAVRVFDEMALRDSVS--WNSLLSASA---SATDALALLRRMLSAAPGAAACDHATLTT 128

Query: 200 VLKACA----GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           VL ACA    G G   +   VH  A   G   +  V NAL+  Y +C     A  VFD +
Sbjct: 129 VLSACARAGGGTGSASL-PAVHGLAASCGLDAEVSVGNALITAYFECSSPGSAERVFDGM 187

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
            ++++I++ +M++G        E+  +FR M     D +  + SS L   A +   R G 
Sbjct: 188 ADRNVITWTAMVSGMARAERYSESLSLFRQM-RRAVDANRASYSSSLLACAGSRAAREGQ 246

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
           Q+HG  ++ G+E DL + + L+ +YSK G ++ A  +F      D VS   I+   ++  
Sbjct: 247 QIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGFAQNG 306

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEH 428
            + EA   F +M   G+  D     ++L A        +G+++ ++ +++ +G +     
Sbjct: 307 LEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGNT---- 362

Query: 429 YAC--MVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGN 474
           Y C  ++N+Y + G + E+  +      F+ +P    V W +++ A   HG+
Sbjct: 363 YVCNGLINMYSKCGELQESIRV------FDGTPSKNTVTWNSIIAAYARHGH 408


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 248/475 (52%), Gaps = 48/475 (10%)

Query: 89  VQTETFASLLETCYQLKAVE--HGIKLHRLIPTNLL-RKNKGISSKLLRLYATFGLIDEA 145
           + T+TF  LL+ C  L+ ++  HG    + +   LL  K + ++ KLL  Y   G   +A
Sbjct: 1   MNTQTFYFLLQKCGSLEKLKQIHG----KAVTLGLLCSKRQHLACKLLNTYTQLGSPVDA 56

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+ + N    +  W  LIS Y    +   A +++  +   G+ PD F     + AC 
Sbjct: 57  QKVFNHIQNPDIVS--WTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG 114

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA------------------------- 240
               +  G  VH    RF  G D  V NAL+DMY+                         
Sbjct: 115 HRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTS 174

Query: 241 ------KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-P 293
                 KC DI  AR +FD +  ++ +S+ +M+TGY+   + +   ++F+ M   G D P
Sbjct: 175 LLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWP 234

Query: 294 DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
             + I ++L   A+     +G+ VHG+V +  ++ D+ + N+L+ +Y+K G L  A  +F
Sbjct: 235 TVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIF 294

Query: 351 DHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
             MP++DV SW ++I     H K   AL  F  M + GV+P+ +T +S+LSAC+H G V 
Sbjct: 295 QEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVV 354

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G  LF  MV+ +GI P+++HY CMV+L GRAGL+ EA  +I E M  +   V+W +LL 
Sbjct: 355 EGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELI-EHMPIKPDSVIWRSLLS 413

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           AC +HGN+ + E A + + ELEPD++  + LL  IY +A R +D  +  + + DR
Sbjct: 414 ACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDR 468


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 234/407 (57%), Gaps = 9/407 (2%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           K++ +++  +  YA    +D A +VF  M  +T  +  WN+LI  +A+ G    ++ L+ 
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSS--WNALIGAHAQNGFPGKSLDLFL 491

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M + G++PD+FT   +L ACA L  +R G+++H   +R G   D F+  +L+ +Y +C 
Sbjct: 492 VMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCS 551

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            ++  + +FD++ NK L+ +N M+TG+  + L  EA D FR M+  G  P  +A++ +L 
Sbjct: 552 SMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLG 611

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             +  S LR+G +VH + L+  +  D  +  +LI +Y+K G ++Q+  +FD + +KD   
Sbjct: 612 ACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAV 671

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WN II     H    +A+  FE M+  G  PD  TF+ +L AC H G V  G +    M 
Sbjct: 672 WNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQ 731

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
             YG+ P++EHYAC+V++ GRAG + EA  ++ E M  E    +W +LL +C  +G++ +
Sbjct: 732 NLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNE-MPDEPDSGIWSSLLSSCRNYGDLEI 790

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           GE  ++KL ELEP+   N+ LL  +Y   G+ D+V +V + + + GL
Sbjct: 791 GEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGL 837



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 220/425 (51%), Gaps = 37/425 (8%)

Query: 1   MVTILYPPSSF-HTSLVIIHCGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPT---- 55
           M ++  PP S  H   +  H  ++N  +R          S N    F+  PKSS T    
Sbjct: 1   MASVAAPPVSCQHYHKLTFH--NRNTWTRNHNN------SNNLFPPFT-VPKSSLTSHTK 51

Query: 56  ---PLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT----VQTETFASLLETCYQLKAVE 108
              P+L  Q+         L+  +  L S  QNG      +  E    LL  C   K + 
Sbjct: 52  THSPIL--QRLHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIH 109

Query: 109 HGIKLHRLI-PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
            G K+H L+  ++ LR +  +S++++ +Y+  G   ++  VFD    +  F +  N+L+S
Sbjct: 110 VGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLY--NALLS 167

Query: 168 GYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
           GY+    + DAI+L+ + +    + PD FT P V KACAG+  + +GE VH  A++ G  
Sbjct: 168 GYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGF 227

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            D FV NAL+ MY KCG +  A  VF+ + N++L+S+NS++     +G   E   +F+ +
Sbjct: 228 SDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRL 287

Query: 287 ILN---GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
           +++   G  PD   + +++   A    +R+G  VHG   + G+  ++ + NSL+ +YSK 
Sbjct: 288 LISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKC 347

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMER-DGVLPDHLTFVSL 396
           G L +A  LFD    K+VVSWN+II  +SK+ +    FE   +M+R + V  + +T +++
Sbjct: 348 GYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNV 407

Query: 397 LSACA 401
           L AC+
Sbjct: 408 LPACS 412



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 196/392 (50%), Gaps = 31/392 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   + + C  +  VE G  +H L        +  + + L+ +Y   G ++ A +VF+ M
Sbjct: 197 TLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETM 256

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---EEEGVEPDQFTFPRVLKACAGLGL 209
            NR   +  WNS++   +E G + +   ++ ++   EEEG+ PD  T   V+ ACA +G 
Sbjct: 257 RNRNLVS--WNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGE 314

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +R+G  VH  A + G   +  V N+LVDMY+KCG + +AR +FD  G K+++S+N+++ G
Sbjct: 315 VRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWG 374

Query: 270 YIHHGLLVEAFDIFRGMIL-NGFDPDPVAISSILANAS----LLRIGAQVHGWVLRRGVE 324
           Y   G     F++ + M        + V + ++L   S    LL +  ++HG+  R G  
Sbjct: 375 YSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSL-KEIHGYAFRHGFL 433

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
            D  +AN+ +  Y+K   LD A  +F  M  K V SWN++I AH+++    ++L  F  M
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVM 493

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV-------EKYGISPRVEHYACMVN 434
              G+ PD  T  SLL ACA L  ++ G+ +   M+       E  GIS    +  C   
Sbjct: 494 MDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSM 553

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           L G+         +I +KME   S V W  ++
Sbjct: 554 LLGK---------LIFDKME-NKSLVCWNVMI 575



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 19/309 (6%)

Query: 173 GEYEDAIALYFQMEEEGV----EPDQFTFPRVLKACAGLGLIRVGEKVH-LDAVRFGFGF 227
           G   DA+ L     + G     +  +     +L+AC     I VG KVH L +       
Sbjct: 67  GNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRN 126

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D  +   ++ MY+ CG    +R VFD    KDL  YN++L+GY  + L  +A  +F  ++
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 288 -LNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
                 PD   +  +    A  + + +G  VH   L+ G   D  + N+LI +Y K G +
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM---ERDGVLPDHLTFVSLL 397
           + A  +F+ M  +++VSWNS+++A S++    E    F+++   E +G++PD  T V+++
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI 306

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKME 454
            ACA +G V++G  +  +   K GI+  V     +V++Y + G + EA   + M   K  
Sbjct: 307 PACAAVGEVRMGMVVHGLAF-KLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 455 FEASPVVWG 463
              + ++WG
Sbjct: 366 VSWNTIIWG 374


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 254/437 (58%), Gaps = 12/437 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + + +  C   +A+  G ++H  + T   R    ++++L+ +YA  G +++AH V D M 
Sbjct: 38  YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMP 97

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R   +  W ++ISGY++     +A  L+  M   G EP++FT   VL +C G   I   
Sbjct: 98  ERNVVS--WTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQH 155

Query: 214 E--KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +  +VH  A++  F    FV ++L+DMYA+  +I +AR VFD +  +D++SY ++L+GY 
Sbjct: 156 QIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYT 215

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
             GL  EA ++FR +   G   + V  S +L   +  S +  G QVHG +LRR + + + 
Sbjct: 216 RLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMA 275

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           + NSLI +YSK GKL  +  +FD+MP++ VVSWN+++     H   +E +  F  M  D 
Sbjct: 276 LQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMC-DK 334

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD +T +++L   +H G V  G  +F  +V++       +HY C+++L GR+G +++A
Sbjct: 335 VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKA 394

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             ++++KM F+ +  +WG+LL AC +H NV +GE  AQKLF++EP+N  N+ +L  IY  
Sbjct: 395 L-LLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAA 453

Query: 506 AGRLDDVERVERMLVDR 522
           A    DV R+ ++++ +
Sbjct: 454 ARMWKDVFRLRKLMLKK 470



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 174/370 (47%), Gaps = 58/370 (15%)

Query: 93  TFASLLETCYQLKAV-EHGIK-LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T AS+L +C   + + +H IK +H          +  + S LL +YA    I EA +VFD
Sbjct: 138 TLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFD 197

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            +  R   ++   +++SGY  LG  E+A+ L+ Q+  EG++ +Q TF  +L A +GL  +
Sbjct: 198 MLPARDVVSY--TTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSM 255

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G++VH   +R    F   + N+L+DMY+KCG ++ +R VFD +  + ++S+N+ML GY
Sbjct: 256 DYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGY 315

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA 330
             HG+  E   +FR M  +   PD V + ++L                            
Sbjct: 316 GRHGMAYEVVQLFRFMC-DKVKPDSVTLLAVLLG-------------------------- 348

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS--------IIHAHSKDHEALIYFEQME 382
                 YS  G +D+   +FDH+ ++     N+        ++    +  +AL+  ++M 
Sbjct: 349 ------YSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMP 402

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGE----RLFSVMVEKYGISPRVEHYACMVNLYGR 438
                P    + SLL AC    +V VGE    +LF +  E  G      +Y  + N+Y  
Sbjct: 403 ---FQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAG------NYVILSNIYAA 453

Query: 439 AGLIDEAYSM 448
           A +  + + +
Sbjct: 454 ARMWKDVFRL 463



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF+ LL     L ++++G ++H LI    L     + + L+ +Y+  G +  +
Sbjct: 234 GMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYS 293

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD M  R+  +  WN+++ GY   G   + + L F+   + V+PD  T   VL   +
Sbjct: 294 RRVFDNMPERSVVS--WNAMLMGYGRHGMAYEVVQL-FRFMCDKVKPDSVTLLAVLLGYS 350

Query: 206 GLGLIRVG 213
             GL+  G
Sbjct: 351 HGGLVDEG 358


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 253/446 (56%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   +   AS+L  C +L+AV+ G+ L      +    +  +S+ ++ +Y   G   EA
Sbjct: 228 GLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEA 287

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H+VF  M      +  W++LI+GY++   Y+++  LY  M   G+  +      VL A  
Sbjct: 288 HRVFSHMVYSDVVS--WSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALG 345

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L L++ G+++H   ++ G   D  V +AL+ MYA CG I +A ++F+   +KD++ +NS
Sbjct: 346 KLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNS 405

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+ GY   G    AF  FR +      P+ + + SIL        LR G ++HG+V + G
Sbjct: 406 MIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSG 465

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +  ++ + NSLI +YSK G L+    +F  M  ++V ++N++I A   H +  + L ++E
Sbjct: 466 LGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYE 525

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM+ +G  P+ +TF+SLLSAC+H G +  G  L++ M+  YGI P +EHY+CMV+L GRA
Sbjct: 526 QMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRA 585

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D AY  I  +M       V+G+LL AC LH  V + E  A+++ +L+ D+  ++ LL
Sbjct: 586 GDLDGAYKFIT-RMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLL 644

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y +  R +D+ +V  M+ D+GLE
Sbjct: 645 SNLYASGKRWEDMSKVRSMIKDKGLE 670



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 249/485 (51%), Gaps = 27/485 (5%)

Query: 62  KAFPKTKLQALDSIIQDL-------------ESSVQNGITVQTETFASLLETCYQLKAVE 108
           +A P   + A ++I++ L              S +Q+G+T    T+  +L+ C  L A++
Sbjct: 91  RALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQ 150

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
            G  +H  +     + N  +   ++ ++A  G +++A ++F++M +R   +  W +LI G
Sbjct: 151 LGRWVHETMHGKT-KANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLAS--WTALICG 207

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
               GE  +A+ L+ +M  EG+ PD      +L AC  L  +++G  + + AVR GF  D
Sbjct: 208 TMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESD 267

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            +V NA++DMY KCGD ++A  VF  +   D++S+++++ GY  + L  E++ ++ GMI 
Sbjct: 268 LYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMIN 327

Query: 289 NGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G   + +  +S+   L    LL+ G ++H +VL+ G+  D+ + ++LIV+Y+  G + +
Sbjct: 328 VGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKE 387

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHS--KDHE-ALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F+    KD++ WNS+I  ++   D E A   F ++      P+ +T VS+L  C  
Sbjct: 388 AESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQ 447

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
           +G+++ G+ +    V K G+   V     ++++Y + G ++    +  + M    +   +
Sbjct: 448 MGALRQGKEIHGY-VTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVT--TY 504

Query: 463 GALLYACYLHGNVCMGETAAQKLFEL-EPDNEHNFELLIKIYGNAGRLDDVERV-ERMLV 520
             ++ AC  HG    G    +++ E     N+  F  L+    +AG LD    +   M+ 
Sbjct: 505 NTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMIN 564

Query: 521 DRGLE 525
           D G+E
Sbjct: 565 DYGIE 569



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 189/356 (53%), Gaps = 12/356 (3%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           +   +S+L+ +Y  FG +  A   F  + ++   A  WN+++ G   +G +  AI  Y  
Sbjct: 66  SSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIA--WNAILRGLVAVGHFTKAIHFYHS 123

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M + GV PD +T+P VLKAC+ L  +++G  VH + +      + +V  A++DM+AKCG 
Sbjct: 124 MLQHGVTPDNYTYPLVLKACSSLHALQLGRWVH-ETMHGKTKANVYVQCAVIDMFAKCGS 182

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  AR +F+ + ++DL S+ +++ G + +G  +EA  +FR M   G  PD V ++SIL  
Sbjct: 183 VEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPA 242

Query: 305 ASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
              L   ++G  +    +R G E DL ++N++I +Y K G   +A  +F HM   DVVSW
Sbjct: 243 CGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSW 302

Query: 362 NSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           +++I  +S++    E+   +  M   G+  + +   S+L A   L  +K G+ + +  V 
Sbjct: 303 STLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHN-FVL 361

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           K G+   V   + ++ +Y   G I EA S+   +   +   +VW +++    L G+
Sbjct: 362 KEGLMSDVVVGSALIVMYANCGSIKEAESIF--ECTSDKDIMVWNSMIVGYNLVGD 415


>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/435 (34%), Positives = 250/435 (57%), Gaps = 16/435 (3%)

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG--LIDEAHQVFDQMSNRTAFA 159
           +  K ++   + H  I     +++  I++KL+  Y+  G   ++ A +VFD +S R  F 
Sbjct: 28  HHCKTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFC 87

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WN++I GYA +G + +A+ +Y  M   G  P+++T+P VLKAC        G  +H +
Sbjct: 88  --WNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGN 145

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            V+ G  FD FV NA V  YAKC +I  +R VFD +  +D++S+NSM++GYI +G + EA
Sbjct: 146 VVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEA 205

Query: 280 FDIFRGMILN---GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
             +F  M+ +   GF PD   + ++L   A  + +  G  +H ++++ G++ D  +   L
Sbjct: 206 VMLFCDMLRDDGIGF-PDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGL 264

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           I +YS  G +  A  +FD +P ++V+ W++II     H    EAL  F Q+   G+  D 
Sbjct: 265 ITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDG 324

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           + F+SLLSAC+H G  + G  LF  M E YG+     HYACMV+L GRAG +++A  +I 
Sbjct: 325 IVFLSLLSACSHAGMHEEGWHLFQTM-ETYGVVKGEAHYACMVDLLGRAGNLEKAMELI- 382

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + M  +    V+GALL A  +H N+ + E AA+KLF L+P+N   + +L ++Y + GR  
Sbjct: 383 QSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFVLDPNNAGRYVILAQMYEDEGRWK 442

Query: 511 DVERVERMLVDRGLE 525
           D  R+ +++ ++ ++
Sbjct: 443 DAARLRKIIREKEIK 457



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L    +   +  G  +H  I    ++ +  +   L+ LY+  G I  A  VFDQ+
Sbjct: 225 TLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQI 284

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R      W+++I  Y   G  ++A++++ Q+ E G+  D   F  +L AC+  G+   
Sbjct: 285 PDRNVIV--WSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEE 342

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G  +      +G          +VD+  + G++ KA
Sbjct: 343 GWHLFQTMETYGVVKGEAHYACMVDLLGRAGNLEKA 378


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/434 (33%), Positives = 247/434 (56%), Gaps = 13/434 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI     TF++ L+ C  L A+E G+++H             + + L+ +Y+  G I+
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 530

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVL 201
           EA +VF ++ +R+  +  WN++I+G+   G    A+  +  M+E  ++  PD+FT   +L
Sbjct: 531 EAEKVFRRIVDRSLIS--WNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGF--DGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           KAC+  G+I  G+++H   VR GF       +  +LVD+Y KCG +  AR  FD+I  K 
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           +IS++S++ GY   G  VEA  +F+ +       D  A+SSI+   A+ +LLR G Q+  
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHE 373
             ++     +  + NS++ +Y K G +D+A   F  M  KDV+SW  +I  + K     +
Sbjct: 709 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 768

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           ++  F +M R  + PD + ++++LSAC+H G +K GE LFS ++E +GI PRVEHYAC+V
Sbjct: 769 SVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVV 828

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GRAG + EA  +I + M  + +  +W  LL  C +HG++ +G+   + L  ++  N 
Sbjct: 829 DLLGRAGRLKEAKHLI-DTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNP 887

Query: 494 HNFELLIKIYGNAG 507
            N+ ++  +YG AG
Sbjct: 888 ANYVMMSNLYGQAG 901



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 211/419 (50%), Gaps = 54/419 (12%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A++VFD M  R   +  W++L+SG+   G+ + +++L+ +M  +G+ P++FTF   LKAC
Sbjct: 431 AYKVFDSMPERNVVS--WSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKAC 488

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L  +  G ++H   ++ GF     V N+LVDMY+KCG I +A  VF RI ++ LIS+N
Sbjct: 489 GLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWN 548

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGF---DPDPVAISSILANAS---LLRIGAQVHGWV 318
           +M+ G++H G   +A D F GM+        PD   ++S+L   S   ++  G Q+HG++
Sbjct: 549 AMIAGFVHAGYGSKALDTF-GMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFL 607

Query: 319 LRRGVEW--DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---E 373
           +R G        I  SL+ +Y K G L  A   FD + +K ++SW+S+I  ++++    E
Sbjct: 608 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 667

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACM 432
           A+  F++++      D     S++   A    ++ G+++ ++ V+   G+   V +   +
Sbjct: 668 AMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLN--SV 725

Query: 433 VNLYGRAGLIDEAYSMIVE---------------------------------KMEFEASP 459
           V++Y + GL+DEA     E                                 +   E   
Sbjct: 726 VDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDE 785

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDVERV 515
           V + A+L AC   G +  GE    KL E   ++P  EH +  ++ + G AGRL + + +
Sbjct: 786 VCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEH-YACVVDLLGRAGRLKEAKHL 843



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 127/244 (52%), Gaps = 14/244 (5%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N L+DMY KC + + A  VFD +  ++++S++++++G++ +G L  +  +F  M   G  
Sbjct: 416 NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY 475

Query: 293 PDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P+    S+ L    LL     G Q+HG+ L+ G E  + + NSL+ +YSK G++++A  +
Sbjct: 476 PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 535

Query: 350 FDHMPQKDVVSWNSII----HAHSKDHEALIYFEQMERDGV--LPDHLTFVSLLSACAHL 403
           F  +  + ++SWN++I    HA     +AL  F  M+   +   PD  T  SLL AC+  
Sbjct: 536 FRRIVDRSLISWNAMIAGFVHA-GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 594

Query: 404 GSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFEASP 459
           G +  G+++   +V   +           +V+LY + G +    +A+  I EK     S 
Sbjct: 595 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSS 654

Query: 460 VVWG 463
           ++ G
Sbjct: 655 LILG 658



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 13/154 (8%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQME 382
           +L  +N LI +Y K  +   A  +FD MP+++VVSW++++  H  + +   +L  F +M 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           R G+ P+  TF + L AC  L +++ G ++    + K G    VE    +V++Y + G I
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCL-KIGFEMMVEVGNSLVDMYSKCGRI 529

Query: 443 DEA---YSMIVEKMEFEASPVVWGALLYACYLHG 473
           +EA   +  IV++     S + W A++ A ++H 
Sbjct: 530 NEAEKVFRRIVDR-----SLISWNAMI-AGFVHA 557


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 270/490 (55%), Gaps = 30/490 (6%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           SSPT  +  Q   P ++L +   + + L      G  +    + +LL  C   +A+  G 
Sbjct: 14  SSPTNYVL-QTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQ 72

Query: 112 KLH------RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           ++H      R +P   LR      ++LL  Y     +++A +V D+M  +   +  W ++
Sbjct: 73  RVHAHMIKTRYLPATYLR------TRLLIFYGKCDCLEDARKVLDEMPEKNVVS--WTAM 124

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC---AGLGLIRVGEKVHLDAVR 222
           IS Y++ G   +A+ ++ +M     +P++FTF  VL +C   +GLGL   G+++H   V+
Sbjct: 125 ISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGL---GKQIHGLIVK 181

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
           + +    FV ++L+DMYAK G I +AR +F+ +  +D++S  +++ GY   GL  EA ++
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241

Query: 283 FRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  +   G  P+ V  +S+L   S   LL  G Q H  VLRR + +   + NSLI +YSK
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQM-ERDGVLPDHLTFVS 395
            G L  A  LFD+MP++  +SWN+++  +SK     E L  F  M +   V PD +T ++
Sbjct: 302 CGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 361

Query: 396 LLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           +LS C+H      G  +F  MV  +YG  P  EHY C+V++ GRAG IDEA+  I ++M 
Sbjct: 362 VLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFI-KRMP 420

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            + +  V G+LL AC +H +V +GE+  ++L E+EP+N  N+ +L  +Y +AGR  DV  
Sbjct: 421 SKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNN 480

Query: 515 VERMLVDRGL 524
           V  M++ + +
Sbjct: 481 VRAMMMQKAV 490


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 238/453 (52%), Gaps = 13/453 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISS 130
           +I   L+   + G+     T  SLL    Q  A+  G  +H       L +N+    I +
Sbjct: 184 AIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGT 243

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            LL +YA    +  A +VF  M+ R      W++LI G+       +A  L+  M  EG+
Sbjct: 244 ALLDMYAKCKHLVYACRVFHGMTVRNEVT--WSALIGGFVLCDRMTEAFNLFKDMLVEGM 301

Query: 191 E-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
                 +    L+ CA L  +R+G ++H    + G   D    N+L+ MYAK G I +A 
Sbjct: 302 CFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEAT 361

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--- 306
            +FD I  KD ISY ++L+GY+ +G   EAF +F+ M      PD   + S++   S   
Sbjct: 362 MLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLA 421

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L+ G   HG V+ RG+  +  I NSLI +Y+K G++D +  +FD MP +D+VSWN++I 
Sbjct: 422 ALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIA 481

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               H    EA   F  M+  G  PD +TF+ L++AC+H G V  G+  F  M  KYGI 
Sbjct: 482 GYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL 541

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           PR+EHY CMV+L  R G +DEAY  I + M  +A   VWGALL AC +H N+ +G+  ++
Sbjct: 542 PRMEHYICMVDLLARGGFLDEAYQFI-QSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 600

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
            + +L P+   NF LL  I+  AGR D+   V 
Sbjct: 601 MIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 633



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 178/338 (52%), Gaps = 16/338 (4%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A QVFD++    A A+  N+LI  Y+  G +  AI LY  M    V P+++TFP 
Sbjct: 47  GQLALARQVFDRIPAPDARAY--NALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPF 104

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VLKAC+ L  +  G  +H  A   G   D FV  AL+D+Y +C     A  VF ++  +D
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDP---VAISSILANASLLRIGAQVH 315
           ++++N+ML GY +HG+   A      M    G  P+    V++  +LA    L  G  VH
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 316 GWVLRRGV---EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---S 369
            + LR  +   E  + I  +L+ +Y+K   L  AC +F  M  ++ V+W+++I       
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 370 KDHEALIYFEQMERDGVLPDHLTFV-SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
           +  EA   F+ M  +G+     T V S L  CA L  +++G +L +++  K GI   +  
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLA-KSGIHADLTA 343

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              ++++Y +AGLI+EA +M+ +++  + + + +GALL
Sbjct: 344 GNSLLSMYAKAGLINEA-TMLFDEIAIKDT-ISYGALL 379


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 244/434 (56%), Gaps = 11/434 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA-TFGLIDEAHQVFDQ 151
           T +S+L+ C  +KA+  G   H L   + + ++  + + LL +YA +   +D+A  VF+ 
Sbjct: 111 TMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +  +TA +  W +LI+G+   G+    +  + QM  E V P+ F+F    +ACA +    
Sbjct: 171 IPLKTAVS--WTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYS 228

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H    ++G   D  V+N+++DMY +C  +  A+  F  +  K+LI++N+++ GY 
Sbjct: 229 CGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY- 287

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLC 328
                 E+  +F  M   G+ P+    +SI    AN ++L  G QVHG ++RRG + ++ 
Sbjct: 288 ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVA 347

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDG 385
           + NSLI +Y+K G +  +  LF  MP +D+VSW +++    AH    EA+  F++M + G
Sbjct: 348 LINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSG 407

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD + F+ +L  C+H G V  G + F  M+E Y I+P  E Y C+V+L GRAG ++EA
Sbjct: 408 IQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEA 467

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           + + VE M FE    VWGALL AC  +    +G  AAQ++ +  P+    + LL KIY  
Sbjct: 468 FQL-VENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAA 526

Query: 506 AGRLDDVERVERML 519
            G+  +  ++ +++
Sbjct: 527 EGKWGEFAKMRKLM 540



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 165/329 (50%), Gaps = 9/329 (2%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ L++ Y   GL  EA  +F+++  R      W ++I G+     Y  A  ++ +M   
Sbjct: 46  ATNLIKSYFDKGLTREACNLFNEIPERDVVT--WTAMIVGFTSCNHYHQAWTMFSEMLRS 103

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY-AKCGDIVK 247
            V+P+ FT   VLKAC G+  +  G   H  A + G     +V NAL+DMY A C  +  
Sbjct: 104 EVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDD 163

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILAN 304
           A +VF+ I  K  +S+ +++ G+ H G        FR M+L    P+  + S      A+
Sbjct: 164 ALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACAS 223

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S    G Q+H  V + G+  D  + NS++ +Y +   L  A   F  + +K++++WN++
Sbjct: 224 ISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTL 283

Query: 365 IHAH--SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
           I  +  S   E+L  F QM  +G  P+  TF S+ +ACA+L  +  G+++   +V + G 
Sbjct: 284 IAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR-GF 342

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
              V     ++++Y + G I +++ +  +
Sbjct: 343 DKNVALINSLIDMYAKCGSISDSHKLFCD 371


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 237/439 (53%), Gaps = 13/439 (2%)

Query: 93  TFASLLETCYQL--KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           TF+++L  C  L  +A+E G ++H  +    L+ +  + S L+ ++A  G + E+ +VFD
Sbjct: 167 TFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFD 226

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFTFPRVLKACAGLG 208
               R      WNS+I  Y++ G   +AI L+  M      VEP+  T+  VL AC+ + 
Sbjct: 227 DC--RWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVE 284

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G++VH   V  GF FD    N+LV+MYAKCG I +AR VFD +  + ++S+  +++
Sbjct: 285 DLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIIS 344

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEW 325
            Y+  G   EA D++R M   G +P+ +  +S+L+  S    L  G  VH  +   G + 
Sbjct: 345 AYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKP 404

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           DL +AN+L+ +Y K G +D A  +FD M  ++VVSW ++I A   H    EA+  ++ M+
Sbjct: 405 DLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMD 464

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +GV      + ++L+AC+  G ++     F  +    G   ++E Y CM  + GRAG +
Sbjct: 465 LEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRL 524

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA  ++   M FEA  V W  LL AC  H +V  G   A+ LF LEP NE  + LL  I
Sbjct: 525 AEAEELLA-VMPFEAEFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNI 583

Query: 503 YGNAGRLDDVERVERMLVD 521
           Y  AGR ++  RV R + D
Sbjct: 584 YVAAGRQEEAARVRRKMGD 602



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 221/390 (56%), Gaps = 22/390 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            + +LL  C +L A   G K+H  +  N   +N  + + L+++Y+  G +++A +VFD M
Sbjct: 72  AYGNLLRDCGELAA---GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGM 128

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG--LI 210
             R + +  W+ +I+GY   G   +AI LY  M    ++PD FTF  VL AC+ LG   +
Sbjct: 129 RRRDSIS--WSKMIAGYVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRAL 183

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            VG+++H    R     D FV +ALV M+AKCG + ++R VFD    KD++ +NSM+  Y
Sbjct: 184 EVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAY 243

Query: 271 IHHGLLVEAFDIFRGMILNG--FDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEW 325
              G   EA ++F+ M  +    +P+ +  +++LA  S    L  G +VH  ++  G ++
Sbjct: 244 SQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQF 303

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-SKDH--EALIYFEQME 382
           D    NSL+ +Y+K G + +A  +FD M Q+ VVSW  II A+  K H  EAL  + +M 
Sbjct: 304 DAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMG 363

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +GV P+ +TF S+LSAC+ LG+++ G+ + + M +  G  P +     +V+LYG+ G +
Sbjct: 364 SEGVEPNGITFASVLSACSSLGALEEGKAVHAQM-KAAGYKPDLAVANALVSLYGKCGSV 422

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           D A   + ++M+   + V W A++ A Y H
Sbjct: 423 DSARK-VFDRMKIR-NVVSWTAMISA-YAH 449



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 156/283 (55%), Gaps = 20/283 (7%)

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G  ++A+      ++E   P    +  +L+ C   G +  G+K+H   V+ G+  + +V 
Sbjct: 52  GGLDNALVWIDSHQQEDCAP---AYGNLLRDC---GELAAGKKIHEHVVKNGYYENVYVG 105

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N LV MY+KCG +  A+ VFD +  +D IS++ M+ GY+ HGL  EA  +++ M +   D
Sbjct: 106 NHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAMAI---D 162

Query: 293 PDPVAISSIL-ANASL----LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
           PD    S++L A +SL    L +G ++H  + R  ++ D+ + ++L+ +++K G L ++ 
Sbjct: 163 PDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESR 222

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG--VLPDHLTFVSLLSACAH 402
            +FD    KDV+ WNS+I A+S+     EA+  F+ M      V P+ +T+ ++L+AC+ 
Sbjct: 223 EVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSA 282

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  ++ G+ +   MV+  G          +VN+Y + G I EA
Sbjct: 283 VEDLEQGKEVHRQMVDA-GFQFDAAAENSLVNMYAKCGSITEA 324



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TFAS+L  C  L A+E G  +H  +     + +  +++ L+ LY   G +D A
Sbjct: 366 GVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSA 425

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD+M  R   +  W ++IS YA     E+AI LY  M+ EGV+   F +  VL AC+
Sbjct: 426 RKVFDRMKIRNVVS--WTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACS 483

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
             GL        L++ R  FG     L       AK  D V   TV  R G
Sbjct: 484 QAGL--------LESARHYFG----CLTRDCGAPAKLEDYVCMATVLGRAG 522


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 243/443 (54%), Gaps = 12/443 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ++ L+ C  +     G+ +H L      +++  ++S L+ +Y+  G I +A +VFD  
Sbjct: 108 TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGV-EPDQFTFPRVLKACAGLGLI 210
              +  A  WN+++SGYA  G   DA+ ++ +M   EG  +PD+FTF  +LKAC+GLG  
Sbjct: 168 GLGSGIA-TWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGAT 226

Query: 211 RVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           R G +VH  + A  F    +  +  ALVDMY KC  +  A  VF+R+  K++I + +++ 
Sbjct: 227 REGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVV 286

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEW 325
           G+   G + EA ++FR    +G  PD   +SS+   LA+ +L+  G QVH + ++     
Sbjct: 287 GHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGT 346

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D+   NS++ +Y K G  D+A  +F  M   +VVSW ++++    H    EA+  FE+M 
Sbjct: 347 DVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMR 406

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             GV PD +T+++LLSAC+H G V    R FS +     + P+ EHYACMV+L GRAG +
Sbjct: 407 AGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGEL 466

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA  +I   M  E +  VW  LL AC +H +V +G  A   L  ++ DN  N+  L  +
Sbjct: 467 REARDLI-RTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNV 525

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
              AG   +  +V   +  RGL+
Sbjct: 526 LAEAGEWRECHKVRDAMRRRGLK 548



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 207/448 (46%), Gaps = 38/448 (8%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           + +  A LL    +  ++  G++LH  I       +  + + L+ +Y   G +D A +VF
Sbjct: 3   RQKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVF 62

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLG 208
             M +R   +  W +L+ G+   G+    + L  +M       P+++T    LKAC  +G
Sbjct: 63  GGMRDRNVVS--WTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVG 120

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSML 267
               G  +H   VR G+     V ++LV +Y+K G I  AR VFD  G    + ++N+M+
Sbjct: 121 DTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMV 180

Query: 268 TGYIHHGLLVEAFDIFRGMILN--GFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
           +GY H G   +A  +FR M  +     PD    +S+L   S L   R GAQVH  +   G
Sbjct: 181 SGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASG 240

Query: 323 --VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIY 377
                +  +A +L+ +Y K  +L  A  +F+ + +K+V+ W +++  H+++    EAL  
Sbjct: 241 FSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALEL 300

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI----SPRVEHYACMV 433
           F +  R G  PD     S++   A    V+ G +     V  YGI       V     +V
Sbjct: 301 FRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQ-----VHCYGIKDPTGTDVSAGNSIV 355

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVCMGETAAQKLFE----- 487
           ++Y + GL DEA  M     E  A  VV W  ++     HG   +G  A   LFE     
Sbjct: 356 DMYLKCGLPDEAERMF---REMRAPNVVSWTTMVNGLGKHG---LGREAV-ALFEEMRAG 408

Query: 488 -LEPDNEHNFELLIKIYGNAGRLDDVER 514
            +EPD E  +  L+    +AG +D+  R
Sbjct: 409 GVEPD-EVTYLALLSACSHAGLVDECRR 435


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 242/444 (54%), Gaps = 12/444 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +   + + +L  C    A+    + H  I  +    N  + + LL +Y+  G++ +A +V
Sbjct: 4   ITASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKV 63

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M  R   +  WN LI+ YA    + DA+ ++    + G  PD FT P V KACAG+G
Sbjct: 64  FDKMVERNMHS--WNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIG 121

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
              +G+ +H   +R GF     V ++++D YAKCG +V A   F  +  +D + +N M+ 
Sbjct: 122 DSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIV 181

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NASLLRIGAQVHGWVLRRGV- 323
           G        +A + FR M+  G   D   + SIL+       L++ G ++HG V++  + 
Sbjct: 182 GLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMK-GKEIHGQVVKNQIF 240

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
             ++ I NSLI +Y+K G L  +  +F  M + ++V+W S+I     H K HEAL  F++
Sbjct: 241 GCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKK 300

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M+  G  P+ +T  ++L++C+H G ++ G ++F  +   YG  P  EHYACMV+L GR G
Sbjct: 301 MKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFG 360

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            ++EA+ +I + M+  A+  VWGALL  C +H N+ +GE AA  LFELEP N  N+  L 
Sbjct: 361 YLEEAFELI-KNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIALC 419

Query: 501 KIYGNAGRLDDVERVERMLVDRGL 524
            +Y + G  D V R    + + GL
Sbjct: 420 SMYDSLGIWDGVSRTRAKMRELGL 443


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/454 (33%), Positives = 256/454 (56%), Gaps = 20/454 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  ++ TC ++  V+   K+H  +    L  +  + S L+  Y   G +++A
Sbjct: 108 GVMPDKYTFPCVVRTCCEVMEVK---KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDA 164

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF ++S R      WN++I+GYA++G  ++A+ ++ +M  +GV P +FT   +L   A
Sbjct: 165 QKVFGELSIRDVVL--WNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFA 222

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH   ++ G+     V NAL+DMY KC  I  A  +F+ I  KD+ S+NS
Sbjct: 223 SRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNS 282

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           +++ +   G       +F  M+ +G  PD V I+++L   S L     G ++HG+++  G
Sbjct: 283 IISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIING 342

Query: 323 VEWD--------LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           +  D        L ++N+++ +Y+K G ++ A  +FD M +KDV SWN +I     H   
Sbjct: 343 LGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYA 402

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EAL  F QM      P+ +T V +LSAC H G V  G    + M   +G+ P +EHY C
Sbjct: 403 LEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTC 462

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           ++++ GRAG +++AY  IV+KM  +A+PVVW ALL AC LHGN  + E AA+++ +LEP+
Sbjct: 463 VIDMLGRAGHLEDAYE-IVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPE 521

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +  ++ L+  +YG  GR ++V  V + + ++ ++
Sbjct: 522 HCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVK 555



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/474 (29%), Positives = 227/474 (47%), Gaps = 57/474 (12%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF-DQMSN 154
           + L++C   + +  G +LH L+ T     +    + L+ +Y+  G + EA  VF D    
Sbjct: 16  AFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHE 75

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           R  FA+  N++ISG+   G        Y +M  EGV PD++TFP V++ C  +  ++   
Sbjct: 76  RNVFAY--NAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK--- 130

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           K+H   ++ G   D FV +ALV+ Y K G +  A+ VF  +  +D++ +N+M+ GY   G
Sbjct: 131 KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIG 190

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
            L EA ++FR M + G  P    I+ IL   A+   L  G  VHG V++ G +  + ++N
Sbjct: 191 CLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSN 250

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DHEA-LIYFEQMERDGVLP 388
           +LI +Y K   +  A  +F+ + +KD+ SWNSII  H +  DH+  L  F++M   G+LP
Sbjct: 251 ALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILP 310

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMV--------------------------EKYG- 421
           D +T  ++L AC+HL ++  G  +   M+                           K G 
Sbjct: 311 DLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGS 370

Query: 422 ----------ISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYA 468
                     +S + V  +  M+  YG  G   EA  M  +  E E  P  V    +L A
Sbjct: 371 MNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSA 430

Query: 469 CYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERM 518
           C   G V  G       +  F + P  EH +  +I + G AG L+D  E V++M
Sbjct: 431 CNHAGFVSHGRLFLAQMESTFGVIPTIEH-YTCVIDMLGRAGHLEDAYEIVQKM 483



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 13/193 (6%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK-------- 124
           D  ++  +  + +GI     T  ++L  C  L A+ HG ++H  +  N L K        
Sbjct: 294 DGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVD 353

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  +S+ ++ +YA  G ++ A ++FD MS +   +  WN +I GY   G   +A+ ++ Q
Sbjct: 354 NLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVAS--WNIMIMGYGMHGYALEALGMFSQ 411

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKC 242
           M E   +P++ T   VL AC   G +  G ++ L  +   FG    +     ++DM  + 
Sbjct: 412 MCEAEFKPNEVTLVGVLSACNHAGFVSHG-RLFLAQMESTFGVIPTIEHYTCVIDMLGRA 470

Query: 243 GDIVKARTVFDRI 255
           G +  A  +  ++
Sbjct: 471 GHLEDAYEIVQKM 483



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 296 VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHMP 354
           VA     A+   L  G Q+H  ++  G         SLI +YSK G++ +A  +F D   
Sbjct: 15  VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH 74

Query: 355 QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +++V ++N+II     +    +   ++++M  +GV+PD  TF  ++  C  +  VK   +
Sbjct: 75  ERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK---K 131

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +   ++ K G+   V   + +VN Y + G +++A  +  E    +   V+W A++
Sbjct: 132 IHGCLL-KMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDV--VLWNAMI 183


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 261/467 (55%), Gaps = 19/467 (4%)

Query: 66  KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           K  ++AL+  ++     V  G+     T +S ++ C +L  V  G   H ++ T+    N
Sbjct: 142 KEHVKALEVFVE----MVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWN 197

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             ISS L  LY       +A +VFD+M         W +++S +++   YE+A+ L++ M
Sbjct: 198 HFISSTLAYLYGVNREPVDARRVFDEMPEPDVIC--WTAVLSAFSKNDLYEEALGLFYAM 255

Query: 186 EE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
              +G+ PD  TF  VL AC  L  ++ G+++H   +  G G +  V ++L+DMY KCG 
Sbjct: 256 HRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGS 315

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           + +AR VF+ +  K+ +S++++L GY  +G   +A +IFR M     + D     ++L  
Sbjct: 316 VREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREM----EEKDLYCFGTVLKA 371

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            A  + +R+G ++HG  +RRG   ++ + ++LI +Y K G +D A  ++  M  +++++W
Sbjct: 372 CAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITW 431

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N+++ A   + +  EA+ +F  M + G+ PD+++F+++L+AC H G V  G   F +M +
Sbjct: 432 NAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAK 491

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC-M 477
            YGI P  EHY+CM++L GRAGL +EA +++ E+ E      +WG LL  C  + +   +
Sbjct: 492 SYGIKPGTEHYSCMIDLLGRAGLFEEAENLL-ERAECRNDASLWGVLLGPCAANADASRV 550

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            E  A+++ ELEP    ++ LL  +Y   GR  D   + +++V RG+
Sbjct: 551 AERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGV 597



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 243/477 (50%), Gaps = 29/477 (6%)

Query: 48  SYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAV 107
           S   S+PT      +     KL  L   I+ L S+  + I    + +ASLL+TC ++ + 
Sbjct: 21  SISSSAPTK---QSRILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSF 77

Query: 108 EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWNSLI 166
            HGI+ H  +  + L  ++ + + LL LY   G  + E  +VFD    + A +  W S++
Sbjct: 78  IHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAIS--WTSMM 135

Query: 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
           SGY    E+  A+ ++ +M   G++ ++FT    +KAC+ LG +R+G   H   +  GF 
Sbjct: 136 SGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFE 195

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
           ++ F+ + L  +Y    + V AR VFD +   D+I + ++L+ +  + L  EA  +F  M
Sbjct: 196 WNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAM 255

Query: 287 ILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
               G  PD     ++L    N   L+ G ++HG ++  G+  ++ + +SL+ +Y K G 
Sbjct: 256 HRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGS 315

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSA 399
           + +A  +F+ M +K+ VSW++++  + ++ E   A+  F +ME      D   F ++L A
Sbjct: 316 VREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKA 371

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           CA L +V++G+ +    V + G    V   + +++LYG++G ID A S +  KM    + 
Sbjct: 372 CAGLAAVRLGKEIHGQYVRR-GCFGNVIVESALIDLYGKSGCIDSA-SRVYSKMSIR-NM 428

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIKIYGNAGRLDD 511
           + W A+L A   +G    GE A     ++     +PD   +F  ++   G+ G +D+
Sbjct: 429 ITWNAMLSALAQNGR---GEEAVSFFNDMVKKGIKPD-YISFIAILTACGHTGMVDE 481


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 229/392 (58%), Gaps = 11/392 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A Q+FD+M     F   WN+++ GY + G  + A+++Y +M   GV PD FTFP 
Sbjct: 83  GDMSYARQLFDEMHKPRPFL--WNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPF 140

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           V+KACA L  +  G  +H   V+ G  F   V   L+ MY K G++  A  +F  +  +D
Sbjct: 141 VIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERD 200

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHG 316
           L+++N+++   +  G   +A   FR M + G  PD V I S L+   +   L  G +++ 
Sbjct: 201 LVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE 260

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE--- 373
           +    G++ ++ + N+ + + +K G +D+A  LFD MPQ++V+SW+++I  ++ + E   
Sbjct: 261 FAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEK 320

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK--YGISPRVEHYAC 431
           AL  F +M+  GV P+++TF+++LSAC+H G V  G + F+ M +     I PR EHYAC
Sbjct: 321 ALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYAC 380

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV+L GR+G ++EAY+ I + M  EA P +WGALL AC +H N+ +G+  A  LFEL P+
Sbjct: 381 MVDLLGRSGHLEEAYNFI-KIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPE 439

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
                 LL  +Y  AGR   VE+V + +  +G
Sbjct: 440 IASYHVLLSNMYAAAGRWHCVEKVRQRMKKKG 471


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 245/468 (52%), Gaps = 21/468 (4%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q+ F   K   L+ ++ D            + TF  L   C +   ++ G +LH      
Sbjct: 140 QQCFSYFKRMLLELVVPD------------STTFNGLFGVCVKFHDIDMGFQLHCFAVKL 187

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
            L  +  + S L+ LYA  GL++ A +VF  + +R      WN +IS YA     E+A  
Sbjct: 188 GLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVV--WNVMISCYALNCLPEEAFV 245

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           ++  M  +G   D+FTF  +L  C  L     G++VH   +R  F  D  V +AL++MYA
Sbjct: 246 MFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYA 305

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           K  +IV A  +FD +  ++++++N+++ GY +     E   + R M+  GF PD + ISS
Sbjct: 306 KNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISS 365

Query: 301 ILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
            ++     S +    Q H + ++   +  L +ANSLI  YSK G +  AC  F    + D
Sbjct: 366 TISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPD 425

Query: 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VSW S+I+A   H    EA   FE+M   G++PD ++F+ +LSAC+H G V  G   F+
Sbjct: 426 LVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFN 485

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +M   Y I P   HY C+V+L GR GLI+EA+  +   M  EA     GA + +C LH N
Sbjct: 486 LMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFL-RSMPMEAESNTLGAFVASCNLHAN 544

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           + + + AA+KLF +EP+   N+ ++  IY +     DVERV RM+ ++
Sbjct: 545 IGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNK 592



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 182/360 (50%), Gaps = 18/360 (5%)

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE-------YEDAI 179
            + +++L +Y      D+A ++F+++S R   +  WN LI G    G+        +   
Sbjct: 86  SLQNQILGVYLKCTEADDAEKLFEELSVRNVVS--WNILIRGIVGCGDANENDSNQQQCF 143

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           + + +M  E V PD  TF  +   C     I +G ++H  AV+ G   D FV + LVD+Y
Sbjct: 144 SYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLY 203

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           A+CG +  AR VF  + ++DL+ +N M++ Y  + L  EAF +F  M  +G + D    S
Sbjct: 204 AQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFS 263

Query: 300 SILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           ++L+    L     G QVHG +LR   + D+ +A++LI +Y+K+  +  A  LFD+M  +
Sbjct: 264 NLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIR 323

Query: 357 DVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           +VV+WN+II  +    + +E +    +M R+G  PD LT  S +S C ++ ++    +  
Sbjct: 324 NVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAH 383

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +  V K      +     +++ Y + G I  A      ++  E   V W +L+ A   HG
Sbjct: 384 AFAV-KSSFQEFLSVANSLISAYSKCGSITSACKCF--RLTREPDLVSWTSLINAYAFHG 440



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 126/261 (48%), Gaps = 14/261 (5%)

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           LK  A   L+  G+++H   ++FGF     + N ++ +Y KC +   A  +F+ +  +++
Sbjct: 57  LKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNV 116

Query: 261 ISYNSMLTGYIHHGLLVE-------AFDIFRGMILNGFDPDPVAISSILANASLLR---I 310
           +S+N ++ G +  G   E        F  F+ M+L    PD    + +           +
Sbjct: 117 VSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDM 176

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q+H + ++ G++ D  + + L+ +Y++ G ++ A  +F  +  +D+V WN +I  ++ 
Sbjct: 177 GFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYAL 236

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           +    EA + F  M  DG   D  TF +LLS C  L     G+++   ++ +      V 
Sbjct: 237 NCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHIL-RLSFDSDVL 295

Query: 428 HYACMVNLYGRAGLIDEAYSM 448
             + ++N+Y +   I +A+ +
Sbjct: 296 VASALINMYAKNENIVDAHRL 316


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 244/434 (56%), Gaps = 11/434 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA-TFGLIDEAHQVFDQ 151
           T +S+L+ C  +KA+  G   H L   + + ++  + + LL +YA +   +D+A  VF+ 
Sbjct: 111 TMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFND 170

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +  +TA +  W +LI+G+   G+    +  + QM  E V P+ F+F    +ACA +    
Sbjct: 171 IPLKTAVS--WTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYS 228

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H    ++G   D  V+N+++DMY +C  +  A+  F  +  K+LI++N+++ GY 
Sbjct: 229 CGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY- 287

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLC 328
                 E+  +F  M   G+ P+    +SI    AN ++L  G QVHG ++RRG + ++ 
Sbjct: 288 ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVA 347

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDG 385
           + NSLI +Y+K G +  +  LF  MP +D+VSW +++    AH    EA+  F++M + G
Sbjct: 348 LINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSG 407

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD + F+ +L  C+H G V  G + F  M+E Y I+P  E Y C+V+L GRAG ++EA
Sbjct: 408 IQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEA 467

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           + + VE M FE    VWGALL AC  +    +G  AAQ++ +  P+    + LL KIY  
Sbjct: 468 FQL-VENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAA 526

Query: 506 AGRLDDVERVERML 519
            G+  +  ++ +++
Sbjct: 527 EGKWGEFAKMRKLM 540



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 165/329 (50%), Gaps = 9/329 (2%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ L++ Y   GL  EA  +F+++  R      W ++I G+     Y  A  ++ +M   
Sbjct: 46  ATNLIKSYFDKGLTREACNLFNEIPERDVVT--WTAMIVGFTSCNHYHQAWTMFSEMLRS 103

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY-AKCGDIVK 247
            V+P+ FT   VLKAC G+  +  G   H  A + G     +V NAL+DMY A C  +  
Sbjct: 104 EVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDD 163

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILAN 304
           A +VF+ I  K  +S+ +++ G+ H G        FR M+L    P+  + S      A+
Sbjct: 164 ALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACAS 223

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S    G Q+H  V + G+  D  + NS++ +Y +   L  A   F  + +K++++WN++
Sbjct: 224 ISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTL 283

Query: 365 IHAH--SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
           I  +  S   E+L  F QM  +G  P+  TF S+ +ACA+L  +  G+++   +V + G 
Sbjct: 284 IAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR-GF 342

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
              V     ++++Y + G I +++ +  +
Sbjct: 343 DKNVALINSLIDMYAKCGSISDSHKLFCD 371


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 245/447 (54%), Gaps = 8/447 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+T   +TF  + +    L+ V    ++        +  N  + + L+ + +  G + EA
Sbjct: 267 GVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEA 326

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F+       F  PWN++ISGY   G  E A+ L+ +M +  +  D +T+  V  A A
Sbjct: 327 RSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIA 386

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            L  + +G+KVH  A++ G   +   + NA+ + YAKCG +   R VF+R+ ++DLIS+ 
Sbjct: 387 ALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWT 446

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           S++T Y       +A +IF  M   G  P+    SS+L   AN  LL  G QVHG + + 
Sbjct: 447 SLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKV 506

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ D CI ++L+ +Y+K G L  A  +F+ +   D VSW +II  H++     +AL  F
Sbjct: 507 GLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLF 566

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M + GV P+ +TF+ +L AC+H G V+ G + F +M + YG+ P +EHYAC+V+L  R
Sbjct: 567 RRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSR 626

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            G +++A   I  +M  E + +VW  LL AC +HGNV +GE AAQK+   + +N   + L
Sbjct: 627 VGHLNDAMEFI-SRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVL 685

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L   Y  +G   D   +  ++ ++G++
Sbjct: 686 LSNTYIESGSYKDGLSLRHLMKEQGVK 712



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 207/418 (49%), Gaps = 19/418 (4%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           QK F  + ++  +S+  D   S      +Q +    LL  C   + ++    +H  +  +
Sbjct: 43  QKPFATSGIKTPNSVKVDKTDS-----HLQIQPLVDLLRDCVDARFLKQAKTVHGFLLKS 97

Query: 121 LLRKNKGIS--SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
               +  +   + +   Y+    ID A ++FDQMS R  F+  W  LI+G AE G + D 
Sbjct: 98  KFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFS--WTVLIAGLAENGLFLDG 155

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
              + +M+ +G+ PDQF +  +L+ C GL  I +G  VH   V  GF    FV  AL++M
Sbjct: 156 FEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNM 215

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           YAK  +I  +  VF+ +   +++S+N+M+TG+  + L ++AFD+F  M+  G  PD    
Sbjct: 216 YAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTF 275

Query: 299 SSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH--M 353
             +     +LR      +V G+ L  GV+ +  +  +LI + SK G L +A  +F+   +
Sbjct: 276 IGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFI 335

Query: 354 PQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
             +    WN++I  + +   + +AL  F +M ++ +  DH T+ S+ +A A L  + +G+
Sbjct: 336 TCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGK 395

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           ++ +  ++       V     + N Y + G +++    +  +ME +   + W +L+ A
Sbjct: 396 KVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRK-VFNRME-DRDLISWTSLVTA 451



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 168/328 (51%), Gaps = 30/328 (9%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           QN I +   T+ S+      LK +  G K+H R I + L      IS+ +   YA  G +
Sbjct: 368 QNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSL 427

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++  +VF++M +R   +  W SL++ Y++  E++ AI ++  M  EG+ P+QFTF  VL 
Sbjct: 428 EDVRKVFNRMEDRDLIS--WTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLV 485

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           +CA L L+  G++VH    + G   D  + +ALVDMYAKCG +  A+ VF+RI N D +S
Sbjct: 486 SCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVS 545

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           + +++ G+  HG++ +A  +FR M+  G +P+ V    +L   S        HG ++  G
Sbjct: 546 WTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS--------HGGLVEEG 597

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           +++   +  +    Y    +++    + D + +            H  D       E + 
Sbjct: 598 LQYFKLMKKT----YGLVPEMEHYACIVDLLSRV----------GHLNDA-----MEFIS 638

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           R  V P+ + + +LL AC   G+V++GE
Sbjct: 639 RMPVEPNEMVWQTLLGACRVHGNVELGE 666



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 2/141 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I+   +    GI     TF+S+L +C  L  +E+G ++H +I    L  +K I S L
Sbjct: 459 DKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESAL 518

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G + +A +VF+++SN  A    W ++I+G+A+ G  +DA+ L+ +M + GVEP
Sbjct: 519 VDMYAKCGCLGDAKKVFNRISN--ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEP 576

Query: 193 DQFTFPRVLKACAGLGLIRVG 213
           +  TF  VL AC+  GL+  G
Sbjct: 577 NAVTFLCVLFACSHGGLVEEG 597


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/476 (33%), Positives = 253/476 (53%), Gaps = 47/476 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F S L  C  L  +  G+++H LI  +    +  + S L+ +Y+   ++  A + FD M
Sbjct: 153 SFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDM 212

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WNSLI+ Y + G    A+ ++ +M   G+EPD+ T   V  ACA L  IR 
Sbjct: 213 DVRNIVS--WNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIRE 270

Query: 213 GEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           G ++H   ++     +  VL NALVDMYAKC  + +AR VFDR+  +D++S  SM++GY 
Sbjct: 271 GLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYA 330

Query: 272 HHGLLVEAFDIFRGMI---------------LNGFDPDPVAISSIL-------------- 302
               +  A  +F  M+                NG + + V +  +L              
Sbjct: 331 KASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390

Query: 303 -----ANASLLRIGAQV------HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                AN + L++G Q       HG+  + G + D+ + NSLI +Y K G ++    +F+
Sbjct: 391 LLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE 450

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M ++D VSWN++I  ++++    EAL  F +M   G  PDH+T + +LSAC+H G V+ 
Sbjct: 451 RMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEE 510

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G   F  M  ++G+ P  +HY CMV+L GRAG +DEA ++I + M  E   VVWG+LL A
Sbjct: 511 GRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLI-QTMPMEPDAVVWGSLLAA 569

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C +HGN+ +G+  A++L E++P N   + LL  +Y   GR  DV RV + +   G+
Sbjct: 570 CKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGV 625



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 225/450 (50%), Gaps = 74/450 (16%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + +  FA LL+TC + K+V     +H  I          I ++L+ +Y   G +++A +V
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 149 FDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYEDAI 179
           FD M  R  F++                              WN+++SG+A+   +E+A+
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
                M  E    ++++F   L ACAGL  + +G ++H    +  +  D ++ +ALVDMY
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMY 196

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           +KC  +  A+  FD +  ++++S+NS++T Y  +G   +A ++F  M+  G +PD + ++
Sbjct: 197 SKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLA 256

Query: 300 SI---LANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           S+    A+ S +R G Q+H  V++      DL + N+L+ +Y+K  ++++A  +FD MP 
Sbjct: 257 SVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 356 KD-------------------------------VVSWNSIIHAHSK---DHEALIYFEQM 381
           +D                               VVSWN++I  +++   + EA+  F  +
Sbjct: 317 RDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-----KYGISPRVEHYACMVNLY 436
           +R+ + P H TF +LL+ACA+L  +K+G +  + +++     K G    +     ++++Y
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMY 436

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            + GL+++   ++ E+M  E   V W A++
Sbjct: 437 MKCGLVEDG-RLVFERM-LERDNVSWNAMI 464



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 38/191 (19%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           VH  +++     ++ I N L+ VY K G L+ A  +FDHM Q++  SWN+++ A +K   
Sbjct: 41  VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100

Query: 371 -------------------------------DHEALIYFEQMERDGVLPDHLTFVSLLSA 399
                                            EAL +   M  +  + +  +F S LSA
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           CA L  + +G ++   ++ K   S  V   + +V++Y +  ++  A     + M+   + 
Sbjct: 161 CAGLMDLSIGVQIHG-LIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAF-DDMDVR-NI 217

Query: 460 VVWGALLYACY 470
           V W +L+  CY
Sbjct: 218 VSWNSLI-TCY 227


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 234/396 (59%), Gaps = 10/396 (2%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQ 194
           YA  G I++A ++FD+M +R  F+  WN++ISGY   G Y +A+ L+  M+E E    + 
Sbjct: 139 YANVGRIEQARKLFDEMPHRDNFS--WNAVISGYVSQGWYMEALDLFRMMQENESSNCNM 196

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FT    L A A +  +R G+++H   +R G   D  V  AL+D+Y KCG + +AR +FD+
Sbjct: 197 FTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQ 256

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           + +KD++S+ +M+      G   E F +FR ++ +G  P+    + +L   A+ +  ++G
Sbjct: 257 MADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMG 316

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
            +VHG++ R G +     A++L+ VYSK G  + A  +F+ MP+ D+VSW S+I  ++++
Sbjct: 317 KEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQN 376

Query: 372 HE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
            +   AL +FE + R G  PD +TFV +LSAC H G V +G   F  + EK+G+    +H
Sbjct: 377 GQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADH 436

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           YAC+++L  R+G   EA + I++ M  +    +W +LL  C +HGN+ + E AA+ LFEL
Sbjct: 437 YACVIDLLARSGRFKEAEN-IIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFEL 495

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           EP+N   +  L  IY NAG   +  +V   + +RG+
Sbjct: 496 EPENPATYITLSNIYANAGLWTEETKVRNDMDNRGI 531



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 39/339 (11%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H  +  + L  ++ + + LL LY   G ++EA  +FDQM+++   +  W ++I   
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVS--WTTMIHRC 272

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            E G  ++  +L+  +   GV P+++TF  VL ACA L   ++G++VH    R G+    
Sbjct: 273 FEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFS 332

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F  +ALV +Y+KCG+   AR VF+++   DL+S+ S++ GY  +G    A   F  ++ +
Sbjct: 333 FAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRS 392

Query: 290 GFDPDPVAISSILA---NASLLRIGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           G  PD +    +L+   +A L+ IG +  H    + G+         +I + ++ G+  +
Sbjct: 393 GTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKE 452

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           A  + D+MP K                               PD   + SLL  C   G+
Sbjct: 453 AENIIDNMPMK-------------------------------PDKFLWASLLGGCRIHGN 481

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           +++ ER    + E    +P    Y  + N+Y  AGL  E
Sbjct: 482 IELAERAAKALFELEPENPAT--YITLSNIYANAGLWTE 518



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 48/332 (14%)

Query: 161 PWNSLISGYAELGEYEDAIALYFQME--EEGV-------EPDQFTFPRVLKACAGLGLIR 211
           P ++ +S ++E   +E+ I L+ Q    +E V       +P    +  ++ AC     + 
Sbjct: 21  PKDTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLE 80

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM----- 266
           +G++VH       F     + N L+ MYAKCG +V A+ +FD I  KDL S+N+M     
Sbjct: 81  LGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYA 140

Query: 267 --------------------------LTGYIHHGLLVEAFDIFRGMILNGFDP----DPV 296
                                     ++GY+  G  +EA D+FR M  N           
Sbjct: 141 NVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLS 200

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           +  +  A  S LR G ++HG+++R G+E D  +  +L+ +Y K G L++A  +FD M  K
Sbjct: 201 SALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK 260

Query: 357 DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           D+VSW ++IH   +D    E    F  +   GV P+  TF  +L+ACA L + ++G+ + 
Sbjct: 261 DIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVH 320

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             M  + G  P     + +V++Y + G  + A
Sbjct: 321 GYMT-RVGYDPFSFAASALVHVYSKCGNTETA 351



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 47/222 (21%)

Query: 293 PDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P P   S+++A       L +G +VH           + I+N LI +Y+K G L  A  L
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 350 FDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD +PQKD+ SWN++I  ++   +  +A   F++M       D+ ++ +++S     G  
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAVISGYVSQGWY 176

Query: 407 KVGERLFSVMVEK-------------------------------YGISPRVEH----YAC 431
                LF +M E                                Y I   +E     +  
Sbjct: 177 MEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTA 236

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +++LYG+ G ++EA   I ++M  +   V W  +++ C+  G
Sbjct: 237 LLDLYGKCGSLNEARG-IFDQMA-DKDIVSWTTMIHRCFEDG 276


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 243/443 (54%), Gaps = 12/443 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ++ L+ C  +     G+ +H L      +++  ++S L+ +Y+  G I +A +VFD  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGV-EPDQFTFPRVLKACAGLGLI 210
              +  A  WN+++SGYA  G   DA+ ++ +M   EG  +PD+FTF  +LKAC+GLG  
Sbjct: 121 GLGSGIA-TWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGAT 179

Query: 211 RVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           R G +VH  + A  F    +  +  ALVDMY KC  +  A  VF+R+  K++I + +++ 
Sbjct: 180 REGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVV 239

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEW 325
           G+   G + EA ++FR    +G  PD   +SS+   LA+ +L+  G QVH + ++     
Sbjct: 240 GHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGT 299

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D+   NS++ +Y K G  D+A  +F  M   +VVSW ++++    H    EA+  FE+M 
Sbjct: 300 DVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMR 359

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             GV PD +T+++LLSAC+H G V    R FS +     + P+ EHYACMV+L GRAG +
Sbjct: 360 AGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGEL 419

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA  +I   M  E +  VW  LL AC +H +V +G  A   L  ++ DN  N+  L  +
Sbjct: 420 REARDLI-RTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNV 478

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
              AG   +  +V   +  RGL+
Sbjct: 479 LAEAGEWRECHKVRDAMRRRGLK 501



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 188/403 (46%), Gaps = 38/403 (9%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPD 193
           +Y   G +D A +VF  M +R   +  W +L+ G+   G+    + L  +M       P+
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVS--WTALMVGFLRHGDATGCLRLLGEMRTASEAAPN 58

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           ++T    LKAC  +G    G  +H   VR G+     V ++LV +Y+K G I  AR VFD
Sbjct: 59  EYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFD 118

Query: 254 RIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN--GFDPDPVAISSILANASLL-- 308
             G    + ++N+M++GY H G   +A  +FR M  +     PD    +S+L   S L  
Sbjct: 119 GAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGA 178

Query: 309 -RIGAQVHGWVLRRG--VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
            R GAQVH  +   G     +  +A +L+ +Y K  +L  A  +F+ + +K+V+ W +++
Sbjct: 179 TREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVV 238

Query: 366 HAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
             H+++    EAL  F +  R G  PD     S++   A    V+ G +     V  YGI
Sbjct: 239 VGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQ-----VHCYGI 293

Query: 423 ----SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVCM 477
                  V     +V++Y + GL DEA  M     E  A  VV W  ++     HG   +
Sbjct: 294 KDPTGTDVSAGNSIVDMYLKCGLPDEAERMF---REMRAPNVVSWTTMVNGLGKHG---L 347

Query: 478 GETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVER 514
           G  A   LFE      +EPD E  +  L+    +AG +D+  R
Sbjct: 348 GREAV-ALFEEMRAGGVEPD-EVTYLALLSACSHAGLVDECRR 388


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 263/477 (55%), Gaps = 11/477 (2%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQD-LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH 114
           P LT   A       A   II+D L+S     +      + SL+  C + ++++    +H
Sbjct: 28  PSLTASVADIPVPAAASTGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIH 87

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
             +  +    +  + + L+ LY   G + +A +VFD M  R   +  W SLI+GYA+   
Sbjct: 88  AHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCS--WTSLIAGYAQNDM 145

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
            ++A+ L   M     +P+ FTF  +LKA        +GE++H   V++ +  D +V +A
Sbjct: 146 PDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSA 205

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+DMYA+CG +  A  VFD++ +K+ +S+N+++ G+   G       +F  M  NGF+  
Sbjct: 206 LLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEAT 265

Query: 295 PVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
               SS+   +A    L  G  VH  +++ G      + N+++ +Y+K G +  A  +FD
Sbjct: 266 HFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFD 325

Query: 352 HMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            + +KDVV+WNS++ A ++     EA+ +FE+M + GV  + +TF+S+L+AC+H G VK 
Sbjct: 326 RVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKE 385

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G++ F +M E Y + P ++HY  +V+L GRAGL+++A   I  KM  + +  VWGALL +
Sbjct: 386 GKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIF-KMPMKPTAAVWGALLGS 443

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +H N  +G+ AA  +FEL+PD+     LL  IY + G+ D   RV +M+   G++
Sbjct: 444 CRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVK 500


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 246/450 (54%), Gaps = 13/450 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            +G+       +S+L+ C    A + G ++H  +       +  I   L+ +YA    +D
Sbjct: 296 SSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VFD MS+R      WN+LISG +  G +++A ++++ + +EG+  ++ T   VLK+
Sbjct: 356 DAMKVFDWMSHRDLIL--WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A L       +VH  A + GF FD  V+N L+D Y KC  +  A  VF+   + D+I+ 
Sbjct: 414 TASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAV 473

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
            SM+T          A  +F  M+  G +PDP  +SS+L   A+ S    G QVH  +++
Sbjct: 474 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEAL 375
           R    D    N+L+  Y+K G ++ A   F  +P++ VVSW+++I     H H K   AL
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK--RAL 591

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +M  +G+ P+H+T  S+L AC H G V   +R F+ M E +GI    EHY+CM++L
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 651

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG +D+A  + V  M F+A+  VWGALL A  +H +  +G+ AA+KLF LEP+    
Sbjct: 652 LGRAGKLDDAMEL-VNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGT 710

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             LL   Y ++G  ++V +V +++ D  ++
Sbjct: 711 HVLLANTYASSGMWNEVAKVRKLMKDSNIK 740



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 191/378 (50%), Gaps = 22/378 (5%)

Query: 105 KAVEHGIKLHRLIPTNLLRKN--KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           +A+  G  LH     NLL+      + + L+  Y+       A +VFD++ +    +  W
Sbjct: 18  QALLPGAHLH----ANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVS--W 71

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           +SL++ Y+  G    AI  +  M  EGV  ++F  P VLK        ++G +VH  A+ 
Sbjct: 72  SSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMA 128

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFD 281
            GFG D FV NALV MY   G +  AR VFD  G+ ++ +S+N +++ Y+ +    +A  
Sbjct: 129 TGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQ 188

Query: 282 IFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +F  M+ +G  P     S ++   +  R    G QVH  V+R G E D+  AN+L+ +Y 
Sbjct: 189 VFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYV 248

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G++D A  +F+ MP  DVVSWN++I     +  DH A+    QM+  G++P+     S
Sbjct: 249 KMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSS 308

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L ACA  G+  +G ++   M++    S        +V++Y +   +D+A  M V     
Sbjct: 309 ILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDA--MKVFDWMS 365

Query: 456 EASPVVWGALLYACYLHG 473
               ++W AL+  C  HG
Sbjct: 366 HRDLILWNALISGCS-HG 382



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 173/319 (54%), Gaps = 10/319 (3%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM-SNRTAFAFPWNSLISG 168
           G ++H +        +  +++ L+ +Y  FG +D+A +VFD+  S R A +  WN L+S 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS--WNGLMSA 176

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y +  +  DAI ++ +M   G++P +F F  V+ AC G   I  G +VH   VR G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 236

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            F  NALVDMY K G +  A  +F+++ + D++S+N++++G + +G    A ++   M  
Sbjct: 237 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 296

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G  P+   +SSIL   A A    +G Q+HG++++   + D  I   L+ +Y+K+  LD 
Sbjct: 297 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 346 ACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD M  +D++ WN++I   +H   H EA   F  + ++G+  +  T  ++L + A 
Sbjct: 357 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 416

Query: 403 LGSVKVGERLFSVMVEKYG 421
           L +     R    + EK G
Sbjct: 417 LEAAS-ATRQVHALAEKIG 434



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            HL A     GF   + N L+  Y+KC     AR VFD I +   +S++S++T Y ++GL
Sbjct: 24  AHLHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
              A   F GM   G   +  A+  +L      ++GAQVH   +  G   D+ +AN+L+ 
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVA 143

Query: 336 VYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHL 391
           +Y   G +D A  +FD    +++ VSWN ++ A+ K+ +   A+  F +M   G+ P   
Sbjct: 144 MYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEF 203

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            F  +++AC    ++  G ++ + MV + G    V     +V++Y + G +D A S+I E
Sbjct: 204 GFSCVVNACTGSRNIDAGRQVHA-MVVRMGYEKDVFTANALVDMYVKMGRVDIA-SVIFE 261

Query: 452 KMEFEASPVVWGALLYACYLHGN 474
           KM  ++  V W AL+  C L+G+
Sbjct: 262 KMP-DSDVVSWNALISGCVLNGH 283



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+       +SLL  C  L A E G ++H  +       +    + L+  YA  G I
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F  +  R   +  W+++I G A+ G  + A+ L+ +M +EG+ P+  T   VL 
Sbjct: 557 EDAELAFSSLPERGVVS--WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFD 228
           AC   GL+   ++ + ++++  FG D
Sbjct: 615 ACNHAGLVDEAKR-YFNSMKEMFGID 639


>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
 gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
          Length = 501

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 247/438 (56%), Gaps = 19/438 (4%)

Query: 97  LLETCYQLKAV-----EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           LL+ C + +++      HG+ +H  + T+ +  N      L+ LY   G  D A  VFD 
Sbjct: 62  LLQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNI-----LMNLYTKCGRNDCARDVFDA 116

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           MS R+  +  WN++I+GY   G+   A+ L+ +M +EG    +FT    L ACA      
Sbjct: 117 MSFRSIVS--WNTMIAGYTCHGDGLQALKLFSKMHQEGTRMSEFTLSSTLCACAAENATT 174

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
              ++H  A++     + FV  A +D+YAKC  I  A  VF++I  K  ++++++  G +
Sbjct: 175 ECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVFEKIPEKTAVTWSTLFAGLV 234

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLC 328
            +GL  +A  +F+     G       +S+IL+  + L +   G Q+H  +++ G   +L 
Sbjct: 235 QNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLALMIEGRQLHAVIIKYGFNGNLF 294

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +A+SL+ VY++ G++++A  +F  M  K+VV WN++I +   H K  EA+I FE+M++ G
Sbjct: 295 VASSLVDVYARCGQIEEAYLVFADMKHKNVVLWNAMIASFTRHGKSWEAMILFEKMQQSG 354

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+ +T+VS++S C H G V+     F +++    + P V HY+CMV++  R+G  DEA
Sbjct: 355 ISPNEVTYVSMMSMCGHAGLVEEARSYFGLLISDQTVEPNVLHYSCMVDVLARSGKTDEA 414

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           + +I ++M FE +P +WG+LL +C+ + NV +   AA++LF+LEP+N  N  LL  +Y  
Sbjct: 415 WELI-QQMPFEPTPSMWGSLLGSCHKYMNVGIARLAAEQLFKLEPENGGNHALLSDVYAA 473

Query: 506 AGRLDDVERVERMLVDRG 523
           +G  ++     + L D G
Sbjct: 474 SGSWENAVLARKHLNDTG 491



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 152/287 (52%), Gaps = 7/287 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G  +   T +S L  C    A     +LH +     L  N  + +  L +YA   +I+
Sbjct: 150 QEGTRMSEFTLSSTLCACAAENATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMIN 209

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VF+++  +TA    W++L +G  + G ++DA+ L+   + EG++  +FT   +L  
Sbjct: 210 DACLVFEKIPEKTAV--TWSTLFAGLVQNGLHKDALRLFQSSQREGIQLTEFTLSAILST 267

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L L+  G ++H   +++GF  + FV ++LVD+YA+CG I +A  VF  + +K+++ +
Sbjct: 268 CASLALMIEGRQLHAVIIKYGFNGNLFVASSLVDVYARCGQIEEAYLVFADMKHKNVVLW 327

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLR 320
           N+M+  +  HG   EA  +F  M  +G  P+    V++ S+  +A L+       G ++ 
Sbjct: 328 NAMIASFTRHGKSWEAMILFEKMQQSGISPNEVTYVSMMSMCGHAGLVEEARSYFGLLIS 387

Query: 321 -RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
            + VE ++   + ++ V ++ GK D+A  L   MP +   S W S++
Sbjct: 388 DQTVEPNVLHYSCMVDVLARSGKTDEAWELIQQMPFEPTPSMWGSLL 434



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 171/341 (50%), Gaps = 20/341 (5%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D F    +L+ CA    + VG+  H  A+  G   D    N L+++Y KCG    AR VF
Sbjct: 55  DMFALHELLQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNILMNLYTKCGRNDCARDVF 114

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
           D +  + ++S+N+M+ GY  HG  ++A  +F  M   G       +SS L   +      
Sbjct: 115 DAMSFRSIVSWNTMIAGYTCHGDGLQALKLFSKMHQEGTRMSEFTLSSTLCACAAENATT 174

Query: 313 ---QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
              Q+H   ++  ++ +  +  + + VY+K   ++ AC +F+ +P+K  V+W+++     
Sbjct: 175 ECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVFEKIPEKTAVTWSTLFAGLV 234

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           ++    +AL  F+  +R+G+     T  ++LS CA L  +  G +L +V++ KYG +  +
Sbjct: 235 QNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLALMIEGRQLHAVII-KYGFNGNL 293

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
              + +V++Y R G I+EAY ++   M+ + + V+W A++ +   HG        A  LF
Sbjct: 294 FVASSLVDVYARCGQIEEAY-LVFADMKHK-NVVLWNAMIASFTRHGK----SWEAMILF 347

Query: 487 E------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           E      + P NE  +  ++ + G+AG +++      +L+ 
Sbjct: 348 EKMQQSGISP-NEVTYVSMMSMCGHAGLVEEARSYFGLLIS 387



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 41/241 (17%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            +SS + GI +   T +++L TC  L  +  G +LH +I       N  ++S L+ +YA 
Sbjct: 246 FQSSQREGIQLTEFTLSAILSTCASLALMIEGRQLHAVIIKYGFNGNLFVASSLVDVYAR 305

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G I+EA+ VF  M ++      WN++I+ +   G+  +A+ L+ +M++ G+ P++ T+ 
Sbjct: 306 CGQIEEAYLVFADMKHKNVVL--WNAMIASFTRHGKSWEAMILFEKMQQSGISPNEVTYV 363

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            ++  C   GL+        +  R  FG                        + D+    
Sbjct: 364 SMMSMCGHAGLV--------EEARSYFGL----------------------LISDQTVEP 393

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA------NASLLRIGA 312
           +++ Y+ M+      G   EA+++ + M    F+P P    S+L       N  + R+ A
Sbjct: 394 NVLHYSCMVDVLARSGKTDEAWELIQQM---PFEPTPSMWGSLLGSCHKYMNVGIARLAA 450

Query: 313 Q 313
           +
Sbjct: 451 E 451


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 252/476 (52%), Gaps = 40/476 (8%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA- 145
           I  +   F+ LL++C    ++  G +LH LI T+    +K IS+ LL LY+  G +D A 
Sbjct: 48  IWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAI 107

Query: 146 ------------------------------HQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
                                          ++FD+M  R      WN++++G  +    
Sbjct: 108 TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVAT--WNAMVAGLIQFEFN 165

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
           E+ + L+ +M E G  PD+F    VL+ CAGL  +  G +VH    + GF F+  V+++L
Sbjct: 166 EEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSL 225

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
             MY KCG + +   +   + +++++++N+++ G   +G   E  D +  M + GF PD 
Sbjct: 226 AHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDK 285

Query: 296 VAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           +   S++++ S L     G Q+H  V++ G    + + +SLI +YS+ G L+ +  +F  
Sbjct: 286 ITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLE 345

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
               DVV W+S+I A   H +  EA+  F QME++ +  + +TF+SLL AC+H G  + G
Sbjct: 346 CENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKG 405

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            + F +MVEKYG+ PR+EHY CMV+L GR G ++EA ++I   M  +A  + W  LL AC
Sbjct: 406 IKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALI-RSMPVKADVITWKTLLSAC 464

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +H    M    ++++F L+P +   + LL  I+ +  R DDV  V + + DR L+
Sbjct: 465 KIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLK 520


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 239/456 (52%), Gaps = 10/456 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  E+ V  G+ +   T  S+L  C Q + +  G  +HRL     L     + + L+ +
Sbjct: 194 LEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDM 253

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQ 194
           Y     +++A +VFD+ S        W ++I  Y        A AL  +M      +P+ 
Sbjct: 254 YGKCRSLEDAKRVFDEDSYDKDV-VSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNA 312

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   +L AC  L   +  +  H   +R G G D  V  ALVD YAKCG +     V ++
Sbjct: 313 VTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYMGMIDMVVEK 372

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
            G++   ++N+ ++GY H     +A  +F+ M+     PD   ++S++   A ++ L   
Sbjct: 373 -GSRRTETWNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQA 431

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H 368
             +H  +L RG      IA  LI VY+K G L  A  LF  +P+KDVV+W ++I     H
Sbjct: 432 KNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMH 491

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
                A++ + +M   GV P+ +T  SL+ +C+H G V  G RLF+ M   +G+ P  EH
Sbjct: 492 GHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRGVHGLMPNAEH 551

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y C+V++ GRAG I+EAY +I + M FE S  VW ALL AC LH NV  GE AA+ LFEL
Sbjct: 552 YLCLVDMLGRAGRIEEAYRLI-QDMPFEPSTSVWSALLGACVLHENVEFGEVAAKHLFEL 610

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           EPDN  N+ LL K+Y  A R  DV+ + R++  RGL
Sbjct: 611 EPDNVGNYVLLGKVYAAADRWSDVQDLWRVMEGRGL 646



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 161/332 (48%), Gaps = 21/332 (6%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           LL  Y   G   +AH +  QM      +   N+L+  Y  LG    A+ALY QM      
Sbjct: 51  LLGSYCACGRPFDAHNLLVQMPQPPPVSVS-NTLLRSYTGLGFNRQALALYSQMRAF--- 106

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D  TF    KACA L   R G  VH  A+  GFG DG+V NALV MY +C D+V A  V
Sbjct: 107 -DHLTFTFAAKACADLRRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAV 165

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           F  + ++  +S+N+++TG +  G    A ++F  M+  G   D   + S+L   A A  L
Sbjct: 166 FGALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDL 225

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
            +G  VH   + RG+     + N+LI +Y K   L+ A  +FD     KDVVSW ++I A
Sbjct: 226 HMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGA 285

Query: 368 HSKDHEALIYF----EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           +  +  A   F    E +      P+ +T V LLSAC  L S K  +   ++ + + G+ 
Sbjct: 286 YVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTSLLSGKHAKCTHALCI-RLGLG 344

Query: 424 PRVEHYACMVNLY---GRAGLIDEAYSMIVEK 452
                   +V+ Y   G  G+ID    M+VEK
Sbjct: 345 SDTVVETALVDCYAKCGYMGMID----MVVEK 372


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 236/432 (54%), Gaps = 35/432 (8%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF--------------------------- 160
           + S LL +YA  G I +A +VF  + +R    +                           
Sbjct: 176 VGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDS 235

Query: 161 -PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             W ++I G A+ G  ++AI  + +M+ +G++ DQ+ F  VL AC GLG I  G+++H  
Sbjct: 236 VSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHAC 295

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            +R  F    +V +AL+DMY KC  +  A+TVFDR+  K+++S+ +M+ GY   G   EA
Sbjct: 296 IIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEA 355

Query: 280 FDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             IF  M  +G DPD   +    S  AN S L  G+Q HG  +  G+   + ++NSL+ +
Sbjct: 356 VKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTL 415

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTF 393
           Y K G +D +  LF+ M  +D VSW +++ A++   +  E +  F++M + G+ PD +T 
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTL 475

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
             ++SAC+  G V+ G+R F +M  +YGI P + HY+CM++L+ R+G ++EA   I   M
Sbjct: 476 TGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFI-NGM 534

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            F    + W  LL AC   GN+ +G+ AA+ L EL+P +   + LL  IY + G+ D V 
Sbjct: 535 PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVA 594

Query: 514 RVERMLVDRGLE 525
           ++ R + ++ ++
Sbjct: 595 QLRRGMREKNVK 606



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 148/293 (50%), Gaps = 8/293 (2%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E  VQ G+ +    F S+L  C  L A+  G ++H  I     + +  + S L+ +Y   
Sbjct: 260 EMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
             +  A  VFD+M  +   +  W +++ GY + G  E+A+ ++  M+  G++PD +T  +
Sbjct: 319 KCLHYAKTVFDRMKQKNVVS--WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQ 376

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
            + ACA +  +  G + H  A+  G      V N+LV +Y KCGDI  +  +F+ +  +D
Sbjct: 377 AISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRD 436

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
            +S+ +M++ Y   G  VE   +F  M+ +G  PD V ++ ++   + A L+  G +   
Sbjct: 437 AVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFK 496

Query: 317 WVLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
            +    G+   +   + +I ++S+ G+L++A    + MP   D + W +++ A
Sbjct: 497 LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 173/376 (46%), Gaps = 42/376 (11%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE- 188
           + LL  Y+  GLI E    F+++ +R      WN LI GY+  G    A+  Y  M  + 
Sbjct: 76  NNLLLAYSKAGLISEMESTFEKLPDRDGVT--WNVLIEGYSLSGLVGAAVKAYNTMMRDF 133

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
                + T   +LK  +  G + +G+++H   ++ GF     V + L+ MYA  G I  A
Sbjct: 134 SANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDA 193

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG----------------------- 285
           + VF  + +++ + YNS++ G +  G++ +A  +FRG                       
Sbjct: 194 KKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKE 253

Query: 286 -------MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
                  M + G   D     S+L        +  G Q+H  ++R   +  + + ++LI 
Sbjct: 254 AIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALID 313

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLT 392
           +Y K   L  A  +FD M QK+VVSW +++  +    +  EA+  F  M+R G+ PDH T
Sbjct: 314 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
               +SACA++ S++ G +     +   G+   V     +V LYG+ G ID++  +  E 
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITS-GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 453 MEFEASPVVWGALLYA 468
              +A  V W A++ A
Sbjct: 433 NVRDA--VSWTAMVSA 446



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 136/312 (43%), Gaps = 53/312 (16%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     T    +  C  + ++E G + H    T+ L     +S+ L+ LY   G ID
Sbjct: 364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDID 423

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           ++ ++F++M+ R A +  W +++S YA+ G   + I L+ +M + G++PD  T   V+ A
Sbjct: 424 DSTRLFNEMNVRDAVS--WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISA 481

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+  GL+  G++              F L     M ++ G       +   IG+     Y
Sbjct: 482 CSRAGLVEKGQRY-------------FKL-----MTSEYG-------IVPSIGH-----Y 511

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
           + M+  +   G L EA     GM    F PD +  +++L+   N   L IG     W   
Sbjct: 512 SCMIDLFSRSGRLEEAMRFINGM---PFPPDAIGWTTLLSACRNKGNLEIGK----WAAE 564

Query: 321 RGVEWD---LCIANSLIVVYSKDGKLDQACWLFDHMPQKDV--------VSWNSIIHAHS 369
             +E D         L  +Y+  GK D    L   M +K+V        + W   +H+ S
Sbjct: 565 SLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFS 624

Query: 370 KDHEALIYFEQM 381
            D E+  Y +Q+
Sbjct: 625 ADDESSPYLDQI 636



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 154/361 (42%), Gaps = 79/361 (21%)

Query: 201 LKACAGLGL---IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           +K C GLG     R  + +H + +R     + F+ N +V  YA       AR VFDRI  
Sbjct: 10  IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFR----------GMILNGFDPDPVAISSILANASL 307
            +L S+N++L  Y   GL+ E    F            +++ G+    +  +++ A  ++
Sbjct: 70  PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 129

Query: 308 LR-------------------------IGAQVHGWVLRRGVEWDL--------------C 328
           +R                         +G Q+HG V++ G E  L              C
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189

Query: 329 IANSLIVVYSKD-----------------GKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
           I+++  V Y  D                 G ++ A  LF  M +KD VSW ++I   +++
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQN 248

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               EA+  F +M+  G+  D   F S+L AC  LG++  G+++ + ++ +      +  
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACII-RTNFQDHIYV 307

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
            + ++++Y +   +  A + + ++M+ + + V W A++     +G     E A +   ++
Sbjct: 308 GSALIDMYCKCKCLHYAKT-VFDRMK-QKNVVSWTAMVVG---YGQTGRAEEAVKIFLDM 362

Query: 489 E 489
           +
Sbjct: 363 Q 363


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/434 (33%), Positives = 247/434 (56%), Gaps = 13/434 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI     TF++ L+ C  L A+E G+++H             + + L+ +Y+  G I+
Sbjct: 100 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 159

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVL 201
           EA +VF ++ +R+  +  WN++I+G+   G    A+  +  M+E  ++  PD+FT   +L
Sbjct: 160 EAEKVFRRIVDRSLIS--WNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 217

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGF--DGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           KAC+  G+I  G+++H   VR GF       +  +LVD+Y KCG +  AR  FD+I  K 
Sbjct: 218 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 277

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           +IS++S++ GY   G  VEA  +F+ +       D  A+SSI+   A+ +LLR G Q+  
Sbjct: 278 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 337

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHE 373
             ++     +  + NS++ +Y K G +D+A   F  M  KDV+SW  +I  + K     +
Sbjct: 338 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 397

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           ++  F +M R  + PD + ++++LSAC+H G +K GE LFS ++E +GI PRVEHYAC+V
Sbjct: 398 SVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVV 457

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GRAG + EA  +I + M  + +  +W  LL  C +HG++ +G+   + L  ++  N 
Sbjct: 458 DLLGRAGRLKEAKHLI-DTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNP 516

Query: 494 HNFELLIKIYGNAG 507
            N+ ++  +YG AG
Sbjct: 517 ANYVMMSNLYGQAG 530



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 234/481 (48%), Gaps = 62/481 (12%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLYATFGLI 142
           I  Q +   S+L  C +    + G ++H      LL+   G+    S+ L+ +Y      
Sbjct: 2   IPNQRQNLVSILRVCTRKGLSDQGGQVH----CYLLKSGSGLNLITSNYLIDMYCKCREP 57

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A++VFD M  R   +  W++L+SG+   G+ + +++L+ +M  +G+ P++FTF   LK
Sbjct: 58  LMAYKVFDSMPERNVVS--WSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLK 115

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  L  +  G ++H   ++ GF     V N+LVDMY+KCG I +A  VF RI ++ LIS
Sbjct: 116 ACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLIS 175

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGF---DPDPVAISSILANAS---LLRIGAQVHG 316
           +N+M+ G++H G   +A D F GM+        PD   ++S+L   S   ++  G Q+HG
Sbjct: 176 WNAMIAGFVHAGYGSKALDTF-GMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHG 234

Query: 317 WVLRRGVEW--DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH-- 372
           +++R G        I  SL+ +Y K G L  A   FD + +K ++SW+S+I  ++++   
Sbjct: 235 FLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEF 294

Query: 373 -EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYA 430
            EA+  F++++      D     S++   A    ++ G+++ ++ V+   G+   V    
Sbjct: 295 VEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV--LN 352

Query: 431 CMVNLYGRAGLIDEAYSMIVE---------------------------------KMEFEA 457
            +V++Y + GL+DEA     E                                 +   E 
Sbjct: 353 SVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEP 412

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDVER 514
             V + A+L AC   G +  GE    KL E   ++P  EH +  ++ + G AGRL + + 
Sbjct: 413 DEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEH-YACVVDLLGRAGRLKEAKH 471

Query: 515 V 515
           +
Sbjct: 472 L 472


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 254/456 (55%), Gaps = 10/456 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           + DL+      +      + + +  C Q K ++   K+H  + ++    +  + + L+ L
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G + EAH+VFD+M  +   +  W SLI+GYA+     +AI L   M +   +P+ F
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVS--WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGF 153

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF  +LKA        +G ++H  AV+  +  D +V +AL+DMYA+CG +  A  VFD++
Sbjct: 154 TFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGA 312
            +K+ +S+N++++G+   G    A  +F  M  NGF+      SSI   LA    L  G 
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGK 273

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            VH  +++   +    + N+++ +Y+K G +  A  +F+ +  KD+V+WNS++ A ++  
Sbjct: 274 WVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYG 333

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EA+ +FE+M + G+  + +TF+ +L+AC+H G VK G+  F  M+++Y + P +EHY
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHY 392

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
             +V+L GRAGL++ A   I  KM  E +  VWGALL AC +H N  +G+ AA  +F+L+
Sbjct: 393 VTVVDLLGRAGLLNYALVFIF-KMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD 451

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           PD+     LL  IY + G  D   RV +M+   G++
Sbjct: 452 PDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVK 487


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 263/477 (55%), Gaps = 11/477 (2%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQD-LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH 114
           P LT   A       A   II+D L+S     +      + SL+  C + ++++    +H
Sbjct: 28  PSLTASVADIPVPAAASTGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIH 87

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
             +  +    +  + + L+ LY   G + +A +VFD M  R   +  W SLI+GYA+   
Sbjct: 88  AHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCS--WTSLIAGYAQNDM 145

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
            ++A+ L   M     +P+ FTF  +LKA        +GE++H   V++ +  D +V +A
Sbjct: 146 PDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSA 205

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+DMYA+CG +  A  VFD++ +K+ +S+N+++ G+   G       +F  M  NGF+  
Sbjct: 206 LLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEAT 265

Query: 295 PVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
               SS+   +A    L  G  VH  +++ G      + N+++ +Y+K G +  A  +FD
Sbjct: 266 HFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFD 325

Query: 352 HMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            + +KDVV+WNS++ A ++     EA+ +FE+M + GV  + +TF+S+L+AC+H G VK 
Sbjct: 326 RVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKE 385

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G++ F +M E Y + P ++HY  +V+L GRAGL+++A   I  KM  + +  VWGALL +
Sbjct: 386 GKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIF-KMPMKPTAAVWGALLGS 443

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +H N  +G+ AA  +FEL+PD+     LL  IY + G+ D   RV +M+   G++
Sbjct: 444 CRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVK 500


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 258/479 (53%), Gaps = 55/479 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRLYATFGLIDEAHQV 148
           TF  +L+ C  L +V  G ++H    T++LR   G    + + L+ +Y     +D A   
Sbjct: 95  TFPFVLKACSTLGSVLEGEQIH----THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNF 150

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME----------------EEG--- 189
           +D M  R   +  WNS+ISGY + G+ E A  L+ +M                 +EG   
Sbjct: 151 WDDMGFRDEVS--WNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFV 208

Query: 190 ---------------VEPDQFTFPRVLKACAGLGLIRVGE--KVHLDAVRFGFGFDGFVL 232
                          V+P+  T   +L AC+ L    VG    V +D  +     +  ++
Sbjct: 209 EMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPL--NTILV 266

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
            AL+DMY+KCGD+ KA  +FD +  K+L S+N+++TG +  GLL EA D++R M      
Sbjct: 267 TALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVK 326

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P+ + + ++L   A    L +G +VH ++ R G++ ++ +A +L+ +Y+K GK+D AC +
Sbjct: 327 PNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLI 386

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F    +KDV  WN++I     H    ++L  F QM R GV P+ +TF+ +LSAC H G V
Sbjct: 387 FVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLV 446

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           + G   FS M +K+G+SP++EHYACMV+L GRAG + EAY + V+ M      ++WGALL
Sbjct: 447 EEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYEL-VQNMLIPPDSIIWGALL 505

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            AC +H N+ + +  ++ +   +  N     LL  IY ++GR  DV RV R + ++ ++
Sbjct: 506 SACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIK 564



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 215/419 (51%), Gaps = 52/419 (12%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           SLL T   L  + H I    LI    L+ +  +  KL+ L++    ID A  V DQ  + 
Sbjct: 4   SLLRTATSLTQI-HQIHAQTLIHGLPLQTH--LIPKLIDLHS----IDYARFVLDQTPSP 56

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           T F+  WNSLI  Y   G  ++++ LY +M     +P  FTFP VLKAC+ LG +  GE+
Sbjct: 57  TDFS--WNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQ 114

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   +R GFG D FV N+L+DMY KC  +  AR  +D +G +D +S+NS+++GY+  G 
Sbjct: 115 IHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQ 174

Query: 276 LVEAFDIFRGM-----------ILNGF-----------------------DPDPVAISSI 301
           + +A D+F  M           ++NG+                        P+   +  +
Sbjct: 175 VEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCL 234

Query: 302 LANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L+  S L    +G  +  ++    +  +  +  +LI +YSK G +++A  +FD +  K++
Sbjct: 235 LSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNL 294

Query: 359 VSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            SWN+II    +     EA+  +  M+   V P+ +T V++LSACA LG++++G R   +
Sbjct: 295 PSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELG-REVHL 353

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + + G+   V     +V++Y + G ID+A  + V+  E + +  +W A++     HG+
Sbjct: 354 YLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVA--LWNAMILGLAYHGD 410



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 16/213 (7%)

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           S+L  A+ L    Q+H   L  G+     +   LI ++S    +D A ++ D  P     
Sbjct: 4   SLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPTDF 59

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SWNS+I A   H     +L  + +M R    P + TF  +L AC+ LGSV  GE++ +  
Sbjct: 60  SWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT-H 118

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V + G    +     ++++Y +   +D A +   + M F    V W +++      G V 
Sbjct: 119 VLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFW-DDMGFR-DEVSWNSIISGYVQWGQV- 175

Query: 477 MGETAAQKLFELEP--DNEHNFELLIKIYGNAG 507
                A+ LFE  P   N   +  +I  YG  G
Sbjct: 176 ---EKARDLFEEMPMRRNVVCWTAMINGYGKEG 205


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 254/464 (54%), Gaps = 31/464 (6%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++  T+ S+L+ C  LK+++ G ++H +I +N +  +  + SKL+ +Y T G + E  ++
Sbjct: 99  LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRI 158

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV--------------EPDQ 194
           FD+++N   F   WN L++GYA++G + ++++L+ +M E G+              + D 
Sbjct: 159 FDKVANEKVFL--WNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDV 216

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL--------NALVDMYAKCGDIV 246
            ++  ++      GL   G  +    +  G   D   +        N L+DMY+K G++ 
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLN 276

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANA 305
            A  VF+ +G + ++S+ SM+ GY   GL   +  +F  M      P+ + ++ IL A A
Sbjct: 277 SAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACA 336

Query: 306 SL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           SL  L  G ++HG +LR G   D  +AN+L+ +Y K G L  A  LFD +P+KD+VSW  
Sbjct: 337 SLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTV 396

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     H    EA+  F +M   G+ PD ++F+S+L AC+H G +  G   F++M    
Sbjct: 397 MIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNC 456

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
            I P+ EHYAC+V+L  RAG + +AY  I + M  E    +WGALL  C ++ +V + E 
Sbjct: 457 CIEPKSEHYACIVDLLARAGNLSKAYKFI-KMMPIEPDATIWGALLCGCRIYHDVKLAEK 515

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A+ +FELEP+N   + LL  IY  A + ++V+++   +  RGL
Sbjct: 516 VAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGL 559


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 251/444 (56%), Gaps = 44/444 (9%)

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           ++N+ I + L+  Y   G +  A ++ D M+ +   A  WN++ISGY   G +EDA+ L+
Sbjct: 220 KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA--WNAMISGYLHHGLFEDALTLF 277

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD-GFVL---NALVDM 238
            +M   GV+ D+ T+  V+ ACA  G   +G++VH   ++     D  F+L   N L+ +
Sbjct: 278 RKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITL 337

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE-------------------- 278
           Y K G +  AR +F  +  KD+I++N++L+GY++ G + E                    
Sbjct: 338 YWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMI 397

Query: 279 -----------AFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVE 324
                      A  +F  M L+G++P+  A +  +   S+   L  G Q+H  ++  G +
Sbjct: 398 SGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHD 457

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM 381
             L + N++I +Y++ G ++ A  +F  MP  D VSWNS+I A   H    +A+  +EQM
Sbjct: 458 STLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQM 517

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            ++G+LPD  TF+++LSAC+H G V+ G R F+ M+E YGI+P  +HYA M++L+ RAG 
Sbjct: 518 LKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGK 577

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
             +A + +++ M FEA   +W ALL  C  HGN+ +G  AA+KLF+L P ++  + LL  
Sbjct: 578 FSDAKN-VIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSN 636

Query: 502 IYGNAGRLDDVERVERMLVDRGLE 525
           +Y + GR +DV R  +++ DRG++
Sbjct: 637 MYASLGRWNDVARTRKLMRDRGVK 660



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 213/482 (44%), Gaps = 93/482 (19%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y+  G +  A ++F++          +N++I+GY+ + +   AI L+  M    
Sbjct: 83  TTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWAN 142

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEK----VHLDAVRFGFGFDGFVLNALVDMYAKC--- 242
            +PD FTF  VL A     LI   E+    +H   V+FG      VLNAL+ +Y KC   
Sbjct: 143 FQPDDFTFASVLSAST---LIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASS 199

Query: 243 -------------------------------------GDIVKARTVFDRIGNKDLISYNS 265
                                                GD+  AR + D +  +  I++N+
Sbjct: 200 PLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNA 259

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M++GY+HHGL  +A  +FR M L G   D    +S++   A+     +G QVH ++L+  
Sbjct: 260 MISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNE 319

Query: 323 VEWD----LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-------- 370
           +  D    L + N+LI +Y K GK+D A  +F  MP KD+++WN+++  +          
Sbjct: 320 LNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAK 379

Query: 371 --------------------------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
                                       +AL  F QM+ DG  P+   F   ++AC+ LG
Sbjct: 380 SFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLG 439

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
           +++ G +L + +V   G    +     M+ +Y R G+++ A +M +  M F   PV W +
Sbjct: 440 ALENGRQLHAQIVH-LGHDSTLSVGNAMITMYARCGIVEAARTMFL-TMPF-VDPVSWNS 496

Query: 465 LLYACYLHGN-VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDR 522
           ++ A   HG+ V   E   Q L E    +   F  ++    +AG +++  R    ML + 
Sbjct: 497 MIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENY 556

Query: 523 GL 524
           G+
Sbjct: 557 GI 558



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 141/343 (41%), Gaps = 95/343 (27%)

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS--------- 262
           +   VH   +  GF   G ++N L+D+Y K  D V AR +FD I   D+I+         
Sbjct: 31  LARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYS 90

Query: 263 ------------------------YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
                                   YN+M+TGY H      A ++FR M    F PD    
Sbjct: 91  ALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTF 150

Query: 299 SSILANASLL----RIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---------DGKLDQ 345
           +S+L+ ++L+    R   Q+HG V++ G+E    + N+L+ VY K            +  
Sbjct: 151 ASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMAS 210

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---------------------------------- 371
           A  LFD MP+++   W ++I  + ++                                  
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-- 429
            +AL  F +M   GV  D  T+ S++SACA  G   +G+++ + ++ K  ++P  +    
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL-KNELNPDRDFLLS 329

Query: 430 --ACMVNLYGRAGLIDEA----YSMIVEKMEFEASPVVWGALL 466
               ++ LY + G +D A    Y M V+ +      + W  LL
Sbjct: 330 VGNTLITLYWKYGKVDGARKIFYEMPVKDI------ITWNTLL 366



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           FA  +  C  L A+E+G +LH  I          + + ++ +YA  G+++ A  +F  M 
Sbjct: 428 FAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMP 487

Query: 154 NRTAFAFP--WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
               F  P  WNS+I+   + G    AI LY QM +EG+ PD+ TF  VL AC+  GL+ 
Sbjct: 488 ----FVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVE 543

Query: 212 VGEKVH---LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
            G +     L+      G D +    ++D++ + G    A+ V D +
Sbjct: 544 EGNRYFNSMLENYGIAPGEDHYA--RMIDLFCRAGKFSDAKNVIDSM 588



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 36/132 (27%)

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           N S   +   VHG V+  G +    I N LI +Y K      A  LFD +PQ DV++  +
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 364 IIHAHS------------------------------------KDHEALIYFEQMERDGVL 387
           +I A+S                                      H A+  F  M      
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 388 PDHLTFVSLLSA 399
           PD  TF S+LSA
Sbjct: 145 PDDFTFASVLSA 156


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 236/402 (58%), Gaps = 10/402 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S LL LY+  G ++EA +VFD M  +   A  W+++++G+   G   +A+A+Y +M E
Sbjct: 144 VCSALLHLYSRCGAMEEAIRVFDGMPRKDRVA--WSTMVAGFVTAGRPVEALAMYSRMRE 201

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV  D+     V++AC   G  R+G  VH   +R     D     +LV MYAK G +  
Sbjct: 202 HGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDV 261

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANAS 306
           A  VF  +  ++ ++++++++G+  +G  VEA D+FR +  +G  P   A +S++LA AS
Sbjct: 262 ACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACAS 321

Query: 307 L--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           +  L++G  +HG++LRR +EW   +  +++ +YSK G L+ A  LF+ +  +D+V WN+I
Sbjct: 322 VGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAI 380

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H   H+AL  F+++   G+ PDH TF SLLSA +H G V+ G+  F  M++++G
Sbjct: 381 IACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFG 440

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P  +HY C+V+L  R+GL++EA  M+   M+ E +  +W  LL  C  +  + +GET 
Sbjct: 441 IEPAEKHYVCIVDLLARSGLVEEANDMLAS-MQTEPTIAIWVILLSGCLNNKKLELGETI 499

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           A+K+ EL P++     L+  +Y  A + D V  + +++ D G
Sbjct: 500 AKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSG 541



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 222/430 (51%), Gaps = 32/430 (7%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH L+   ++  ++ I S L   YA  G +D A        +  +    WN L+S ++ 
Sbjct: 29  RLHALL---VVSSSQHILSSLAAAYARAGALDAAESTLAASPSSPSSIAAWNGLLSAHSR 85

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G    A+ + F+       P+  TF   L ACA LG +   E V + A   G+G D FV
Sbjct: 86  AGAPGAALRV-FRALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFV 144

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            +AL+ +Y++CG + +A  VFD +  KD +++++M+ G++  G  VEA  ++  M  +G 
Sbjct: 145 CSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGV 204

Query: 292 DPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             D V +  ++    +    RIGA VHG +LR  +  D+    SL+ +Y+K+G LD AC 
Sbjct: 205 SDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQ 264

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F  MP ++ V+W+++I   +++    EAL  F +++ DG+ P     VS L ACA +G 
Sbjct: 265 VFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGF 324

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACM-----VNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +K+G+ +       +G   R   + C+     +++Y + G ++ A  +  +    +   V
Sbjct: 325 LKLGKSI-------HGFILRRLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDL--V 375

Query: 461 VWGALLYACYLHGNVCMGETAA--QKLFE--LEPDNEHNFELLIKIYGNAGRLDDVE-RV 515
           +W A++  C  HG  C  +  A  Q+L E  ++PD+   F  L+    ++G +++ +   
Sbjct: 376 LWNAIIACCGTHG--CGHDALALFQELNETGIKPDHA-TFASLLSALSHSGLVEEGKFWF 432

Query: 516 ERMLVDRGLE 525
           +RM+ + G+E
Sbjct: 433 DRMIKEFGIE 442



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G++        +++ C        G  +H  +  + +R +   ++ L+ +YA  G +D
Sbjct: 201 EHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLD 260

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A QVF  M  R      W++LISG+A+ G   +A+ L+ +++ +G++P  +     L A
Sbjct: 261 VACQVFRMMPYRNDVT--WSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLA 318

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G +++G+ +H   +R    +   +  A++DMY+KCG +  AR +F+++ ++DL+ +
Sbjct: 319 CASVGFLKLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLW 377

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           N+++     HG   +A  +F+ +   G  PD    +S+L+  S
Sbjct: 378 NAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 420


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 247/446 (55%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     TF+S+L     +  +  G ++H L+  +    N  +++ LL  Y+    +D+ 
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M  R   ++  N +I+ YA        + L+ +M++ G +     +  +L    
Sbjct: 291 RRLFDEMPERDNVSY--NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  + +G+++H   V  G   +  + NAL+DMY+KCG +  A++ F     K  IS+ +
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 408

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           ++TGY+ +G   EA  +F  M   G  PD    SSI+  +S   ++ +G Q+H +++R G
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIYFE 379
            +  +   + L+ +Y+K G LD+A   FD MP+++ +SWN++I A++   EA   +  FE
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 528

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M   G  PD +TF+S+L+AC+H G      + F +M  +Y ISP  EHYAC+++  GR 
Sbjct: 529 GMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRV 588

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G   +   M+VE M F+A P++W ++L++C +HGN  +   AA KLF +EP +   + +L
Sbjct: 589 GCFSQVQKMLVE-MPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVIL 647

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY  AG+ +D   V++++ DRG+ 
Sbjct: 648 SNIYARAGQWEDAACVKKIMRDRGVR 673



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 188/367 (51%), Gaps = 17/367 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + LL  Y   GL+  A +VF +M ++ A  +  N+++ G ++ G +  A+ L+  M  
Sbjct: 172 VCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY--NAMMMGCSKEGLHTQALQLFAAMRR 229

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+    FTF  +L   AG+  + +G +VH   +R     + FV N+L+D Y+KC  +  
Sbjct: 230 AGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDD 289

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
            R +FD +  +D +SYN ++  Y  +        +FR M   GFD   +  +++L+ A  
Sbjct: 290 MRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGS 349

Query: 308 L---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L    IG Q+H  ++  G+  +  + N+LI +YSK G LD A   F +  +K  +SW ++
Sbjct: 350 LPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL 409

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++    EAL  F  M R G+ PD  TF S++ A + L  + +G +L S ++ + G
Sbjct: 410 ITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLI-RSG 468

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
               V   + +V++Y + G +DEA     E  E  +  + W A++ A Y H     GE  
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS--ISWNAVISA-YAH----YGEAK 521

Query: 482 -AQKLFE 487
            A K+FE
Sbjct: 522 NAIKMFE 528



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 169/343 (49%), Gaps = 20/343 (5%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  Y++ G +  A  +F    +R A    W  ++  +A  G   DA++L+  M  EGV 
Sbjct: 80  ILSAYSSSGDLPAAQHLFLSSPHRNATT--WTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 192 PDQFTFPRVLK--ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           PD+ T   VL    C    L       H  A++FG     FV N L+D Y K G +  AR
Sbjct: 138 PDRVTVTTVLNLPGCTVPSL-------HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAAR 190

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            VF  + +KD ++YN+M+ G    GL  +A  +F  M   G        SSIL   A  +
Sbjct: 191 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMA 250

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L +G QVH  VLR     ++ + NSL+  YSK   LD    LFD MP++D VS+N II 
Sbjct: 251 HLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 367 AHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           A++ +  A   L  F +M++ G     L + ++LS    L  V +G+++ + +V   G++
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV-LLGLA 369

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
                   ++++Y + G++D A S    +   E S + W AL+
Sbjct: 370 SEDLLGNALIDMYSKCGMLDAAKSNFSNRS--EKSAISWTALI 410



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 102/196 (52%), Gaps = 5/196 (2%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F LN ++  Y+  GD+  A+ +F    +++  ++  M+  +   G   +A  +FR M+  
Sbjct: 75  FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 134

Query: 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           G  PD V ++++L N     +   +H + ++ G++  + + N+L+  Y K G L  A  +
Sbjct: 135 GVIPDRVTVTTVL-NLPGCTV-PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F  M  KD V++N+++   SK+    +AL  F  M R G+   H TF S+L+  A +  +
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 407 KVGERLFSVMVEKYGI 422
            +G ++ ++++    +
Sbjct: 253 LLGHQVHALVLRSTSV 268


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/444 (32%), Positives = 249/444 (56%), Gaps = 14/444 (3%)

Query: 84  QNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ IT+ T+ T+A++++ C  +K +    +LH  +          + + L+  Y+  G +
Sbjct: 298 RSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQL 357

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A  +F  MS  +     W ++I+G  + G+   A AL+ +M E+GV P+ FT+  +L 
Sbjct: 358 GNALDIFLLMSG-SQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT 416

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A     +  +  ++H   ++  +     V  AL+  Y+K  +  +A ++F  I  KD++S
Sbjct: 417 A----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVS 472

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWV 318
           +++MLT Y   G    A +IF  M ++G  P+   ISS++    +  + + +G Q H   
Sbjct: 473 WSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAIS 532

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
           ++      LC++++L+ +Y++ G ++ A  +F+    +D+VSWNS++     H    +AL
Sbjct: 533 IKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKAL 592

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F QME +G+  D +TF+S++  CAH G V+ G+R F  M   YGI+P +EHYACMV+L
Sbjct: 593 DVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDL 652

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           Y RAG +DEA S+I E M F A P+VW  LL AC +H NV +G+ AA+KL  LEP +   
Sbjct: 653 YSRAGKLDEAMSLI-EGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSAT 711

Query: 496 FELLIKIYGNAGRLDDVERVERML 519
           + LL  IY  AG+  + + V +++
Sbjct: 712 YVLLSNIYSAAGKWKEKDEVRKLM 735



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 202/419 (48%), Gaps = 21/419 (5%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGI 128
           QALD     L+    +G  V       +L+ C  +     G +LH L I     R + G+
Sbjct: 85  QALDHF---LDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGV 141

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            + L+ +Y  +  + +  +VF+ M  R      W SL++GY + G   D + L+F+M  E
Sbjct: 142 GTSLVDMYMKWHSVVDGRKVFEAMPKRNVVT--WTSLLTGYIQDGALSDVMELFFRMRAE 199

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV P+  TF  VL   A  G++ +G +VH  +V+FG     FV N+L++MYAKCG + +A
Sbjct: 200 GVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEA 259

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF---RGMILNGFDPDPVAISSILANA 305
           R VF  +  +D++S+N+++ G + +G  +EA  +F   R  I          +  + AN 
Sbjct: 260 RVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANI 319

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSI 364
             L +  Q+H  VL+RG      +  +L+  YSK G+L  A  +F  M   ++VVSW ++
Sbjct: 320 KQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAM 379

Query: 365 IHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I+   ++ +   A   F +M  DGV P+  T+ ++L+A       ++  ++     E   
Sbjct: 380 INGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTS 439

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           I         ++  Y +    +EA S+   KM  +   V W A+L  CY       G T
Sbjct: 440 IVGTA-----LLASYSKLCNTEEALSIF--KMIDQKDVVSWSAML-TCYAQAGDSDGAT 490


>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
 gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
          Length = 506

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 243/470 (51%), Gaps = 19/470 (4%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           +Q   P+  ++   S+         N IT     + ++L  C  ++A+E G ++HR +  
Sbjct: 34  SQSGHPREAIELFKSMGSSSPPVEPNAIT-----YTTVLAACSAVEALEQGKEVHRQMVD 88

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
              + +    + L+ +YA  G I EA +VFD M  RT  +  W  +IS Y   G   +A+
Sbjct: 89  AGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVS--WTGIISAYVRKGHPREAL 146

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
            LY +M  EGVEP+  TF  VL AC+ LG +  G+ VH      G+  D  V NALV +Y
Sbjct: 147 DLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLY 206

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
            KCG +  AR VFDR+  ++++S+ +M++ Y HH    EA  +++ M +    P+ V ++
Sbjct: 207 GKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLYKAMDVA---PNAVTLA 263

Query: 300 SILANASLL---RIGAQVHGWVLR--RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           S+L+  + L     G  VH  +     G+  D  + N+L+ +Y+K G  D A  +FD M 
Sbjct: 264 SVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMA 323

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            +D +SW+++I A   H +  EA+     ME +GV      + ++L+AC+  G ++    
Sbjct: 324 VRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACSQAGLLESARH 383

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
            F  +    G   ++E Y CM  + GRAG + EA  ++   M FEA  V W  LL AC  
Sbjct: 384 YFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLA-VMPFEAEFVAWMGLLAACKA 442

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           H +V  G   A+ LF LEP NE  + LL  IY  AGR ++  RV R + D
Sbjct: 443 HNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKMGD 492



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 208/431 (48%), Gaps = 61/431 (14%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEP 192
           ++A  G + E+ +VFD    R      WNS+I  Y++ G   +AI L+  M      VEP
Sbjct: 1   MFAKCGSLKESREVFDDC--RWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEP 58

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           +  T+  VL AC+ +  +  G++VH   V  GF FD    N+LV+MYAKCG I +AR VF
Sbjct: 59  NAITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVF 118

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLR 309
           D +  + ++S+  +++ Y+  G   EA D++R M   G +P+ +  +S+L+  S    L 
Sbjct: 119 DGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALE 178

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-- 367
            G  VH  +   G + DL +AN+L+ +Y K G +D A  +FD M  ++VVSW ++I +  
Sbjct: 179 EGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYA 238

Query: 368 -HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG----ERLFSVMVEKYGI 422
            H    EA+  ++ M+   V P+ +T  S+LSACA LG+ + G    E+L S      G+
Sbjct: 239 HHRHSEEAIQLYKAMD---VAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTT---GL 292

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSM------------------------------IVEK 452
           +        ++N+Y + G  D A  +                              +   
Sbjct: 293 ATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRS 352

Query: 453 MEFE---ASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIKIYG 504
           ME E   AS  ++G +L AC   G   + E+A      L      P    ++  +  + G
Sbjct: 353 MELEGVQASSFIYGTVLTACSQAG---LLESARHYFGCLTRDCGAPAKLEDYVCMATVLG 409

Query: 505 NAGRLDDVERV 515
            AGRL + E +
Sbjct: 410 RAGRLAEAEEL 420


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 243/446 (54%), Gaps = 18/446 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F S L  C  L  +  G ++H L+  +    +  + S L+ +Y+  G +  A +VF  M
Sbjct: 149 SFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM 208

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WNSLI+ Y + G   +A+ ++ +M + G+EPD+ T   V+ ACA L  ++ 
Sbjct: 209 IERNLVT--WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKE 266

Query: 213 GEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           G ++H   V+     D  VL NALVDMYAKC  + +AR VFDR+  ++++S  SM++GY 
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYA 326

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS------LLRIGAQVHGW----VLRR 321
               +  A  +F  M           I+    N        L R+  +   W        
Sbjct: 327 RAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGN 386

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
            ++ D+ + NSLI +Y K G ++    +F+ M ++D VSWN+II  ++++    EAL  F
Sbjct: 387 LLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIF 446

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M   G  PDH+T + +L AC+H G V+ G   F  M E++G+ P  +HY CMV+L GR
Sbjct: 447 RKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGR 505

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG ++EA ++I E M      VVWG+LL AC +HGN+ MG+ AA+KL E++P N   + L
Sbjct: 506 AGCLNEAKNLI-EAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVL 564

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  +Y   GR  DV RV +++  +G+
Sbjct: 565 LSNMYAELGRWGDVVRVRKLMRQQGV 590



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 37/291 (12%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+   F ++L +C      R    VH   +   F  + F+ N L+D+Y KC  +  AR +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 252 FDRIGNK-------------------------------DLISYNSMLTGYIHHGLLVEAF 280
           FDR+  +                               D  S+NSM++G+  H    E+ 
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 281 DIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           + F  M    F  +  +  S L A A L  L +G QVH  V +     D+ + ++LI +Y
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
           SK G +  A  +F  M ++++V+WNS+I  + ++    EAL  F +M   G+ PD +T  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           S++SACA L ++K G ++ + +V+       +     +V++Y +   ++EA
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 44/194 (22%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA------ 367
           VH  +L      ++ I N LI VY K   LD A  LFD MPQ++  +WNS+I        
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 368 ----------------------------HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
                                       H +  E+L YF +M R+  L +  +F S LSA
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFE 456
           CA L  + +G ++ + +V K   S  V   + ++++Y + G +   +E +S ++E+    
Sbjct: 157 CAGLMDLNMGTQVHA-LVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER---- 211

Query: 457 ASPVVWGALLYACY 470
            + V W +L+  CY
Sbjct: 212 -NLVTWNSLI-TCY 223


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 234/392 (59%), Gaps = 10/392 (2%)

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
           FG ID   +VF+ M  +   ++  N++I+GYA+ G YEDA+ +  +M    ++PD FT  
Sbjct: 190 FG-IDSVRRVFEVMPRKDVVSY--NTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL   +    +  G+++H   +R G   D ++ ++LVDMYAK   I  +  VF R+  +
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           D IS+NS++ GY+ +G   EA  +FR M+     P  VA SS++   A+ + L +G Q+H
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HA-HSKDH 372
           G+VLR G   ++ IA++L+ +YSK G +  A  +FD M   D VSW +II  HA H   H
Sbjct: 367 GYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGH 426

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA+  FE+M+R GV P+ + FV++L+AC+H+G V      F+ M + YG++  +EHYA +
Sbjct: 427 EAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAV 486

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
            +L GRAG ++EAY+ I  KM  E +  VW  LL +C +H N+ + E  A+K+F ++ +N
Sbjct: 487 ADLLGRAGKLEEAYNFI-SKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
              + L+  +Y + GR  ++ ++   +  +GL
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 208/422 (49%), Gaps = 50/422 (11%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +L++   ++K+     +LH + I T  L      +S ++ +Y    L+ EA  +F  + +
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTS--ASIVISIYTNLKLLHEALLLFKTLKS 67

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
               A  W S+I  + +   +  A+A + +M   G  PD   FP VLK+C  +  +R GE
Sbjct: 68  PPVLA--WKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE 125

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAK-----------------------CGD------- 244
            VH   VR G   D +  NAL++MYAK                        GD       
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET 185

Query: 245 ------IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
                 I   R VF+ +  KD++SYN+++ GY   G+  +A  + R M      PD   +
Sbjct: 186 CIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTL 245

Query: 299 SSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           SS+L   S    +  G ++HG+V+R+G++ D+ I +SL+ +Y+K  +++ +  +F  +  
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           +D +SWNS++  + ++   +EAL  F QM    V P  + F S++ ACAHL ++ +G++L
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
              ++ + G    +   + +V++Y + G I +A   I ++M      V W A++    LH
Sbjct: 366 HGYVL-RGGFGSNIFIASALVDMYSKCGNI-KAARKIFDRMNV-LDEVSWTAIIMGHALH 422

Query: 473 GN 474
           G+
Sbjct: 423 GH 424



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 173/356 (48%), Gaps = 39/356 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S+L    +   V  G ++H  +    +  +  I S L+ +YA    I+++ +VF ++
Sbjct: 244 TLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WNSL++GY + G Y +A+ L+ QM    V+P    F  V+ ACA L  + +
Sbjct: 304 YCRDGIS--WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   +R GFG + F+ +ALVDMY+KCG+I  AR +FDR+   D +S+ +++ G+  
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           HG   EA  +F  M   G  P+ VA  ++L   S + +  +  G+             NS
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF------------NS 469

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392
           +  VY  + +L+    + D            ++    K  EA  +  +M    V P    
Sbjct: 470 MTKVYGLNQELEHYAAVAD------------LLGRAGKLEEAYNFISKM---CVEPTGSV 514

Query: 393 FVSLLSACAHLGSV----KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           + +LLS+C+   ++    KV E++F+V  E  G       Y  M N+Y   G   E
Sbjct: 515 WSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGA------YVLMCNMYASNGRWKE 564


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 245/447 (54%), Gaps = 8/447 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+T   +TF  + +    L+ V    ++        +  N  + + L+ + +  G + EA
Sbjct: 267 GVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEA 326

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F+       F  PWN++ISGY   G  E A+ L+ +M +  +  D +T+  V  A A
Sbjct: 327 RSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIA 386

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            L  + +G+KVH  A++ G   +   + NA+ + YAKCG +   R VF+R+ ++DLIS+ 
Sbjct: 387 ALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWT 446

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           S++T Y       +A +IF  M   G  P+    SS+L   AN  LL  G QVHG + + 
Sbjct: 447 SLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKV 506

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ D CI ++L+ +Y+K G L  A  +F+ +   D VSW +II  H++     +AL  F
Sbjct: 507 GLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLF 566

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M + GV P+ +TF+ +L AC+H G V+ G + F +M + YG+ P +EHYAC+V+L  R
Sbjct: 567 RRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSR 626

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            G +++A   I  +M  E + +VW  LL AC +HGNV +GE AAQK+   + +N   + L
Sbjct: 627 VGHLNDAMEFI-SRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVL 685

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L   Y  +G   D   +  ++ ++G++
Sbjct: 686 LSNTYIESGSYKDGLSLRHVMKEQGVK 712



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 207/418 (49%), Gaps = 19/418 (4%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           QK F  + ++  +S+  D   S      +Q +    LL  C   + ++    +H  +  +
Sbjct: 43  QKPFATSGIKTPNSVKVDKTDS-----HLQIQPLVDLLRDCVDARFLKQAKTVHGFLLKS 97

Query: 121 LLRKNKGIS--SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
               +  +   + +   Y+    ID A ++FDQMS R  F+  W  LI+G AE G + D 
Sbjct: 98  KFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFS--WTVLIAGLAENGLFLDG 155

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
              + +M+ +G+ PDQF +  +L+ C GL  I +G  VH   V  GF    FV  AL++M
Sbjct: 156 FEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNM 215

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           YAK  +I  +  VF+ +   +++S+N+M+TG+  + L ++AFD+F  M+  G  PD    
Sbjct: 216 YAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTF 275

Query: 299 SSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH--M 353
             +     +LR      +V G+ L  GV+ +  +  +LI + SK G L +A  +F+   +
Sbjct: 276 IGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFI 335

Query: 354 PQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
             +    WN++I  + +   + +AL  F +M ++ +  DH T+ S+ +A A L  + +G+
Sbjct: 336 TCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGK 395

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           ++ +  ++       V     + N Y + G +++    +  +ME +   + W +L+ A
Sbjct: 396 KVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRK-VFNRME-DRDLISWTSLVTA 451



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 168/328 (51%), Gaps = 30/328 (9%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           QN I +   T+ S+      LK +  G K+H R I + L      IS+ +   YA  G +
Sbjct: 368 QNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSL 427

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++  +VF++M +R   +  W SL++ Y++  E++ AI ++  M  EG+ P+QFTF  VL 
Sbjct: 428 EDVRKVFNRMEDRDLIS--WTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLV 485

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           +CA L L+  G++VH    + G   D  + +ALVDMYAKCG +  A+ VF+RI N D +S
Sbjct: 486 SCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVS 545

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           + +++ G+  HG++ +A  +FR M+  G +P+ V    +L   S        HG ++  G
Sbjct: 546 WTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS--------HGGLVEEG 597

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           +++   +  +    Y    +++    + D + +            H  D       E + 
Sbjct: 598 LQYFKLMKKT----YGLVPEMEHYACIVDLLSRV----------GHLNDA-----MEFIS 638

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           R  V P+ + + +LL AC   G+V++GE
Sbjct: 639 RMPVEPNEMVWQTLLGACRVHGNVELGE 666



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 2/141 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  I+   +    GI     TF+S+L +C  L  +E+G ++H +I    L  +K I S L
Sbjct: 459 DKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESAL 518

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +YA  G + +A +VF+++SN  A    W ++I+G+A+ G  +DA+ L+ +M + GVEP
Sbjct: 519 VDMYAKCGCLGDAKKVFNRISN--ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEP 576

Query: 193 DQFTFPRVLKACAGLGLIRVG 213
           +  TF  VL AC+  GL+  G
Sbjct: 577 NAVTFLCVLFACSHGGLVEEG 597


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 244/449 (54%), Gaps = 13/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q GI     TF  LL+ C  L   E G + H  +       +  +++ L+ +Y  FG  
Sbjct: 92  LQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCF 151

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D + QVF++M  R   +  W+S++  YA  G YE+ + L+++M  EG+ P++ +   ++ 
Sbjct: 152 DFSRQVFERMPERNVVS--WSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGS---IVN 206

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A A +      +      +  G   D  V NA + MYA+CG I  AR  F  I +KDL++
Sbjct: 207 AMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVA 266

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + SM+  Y+   L + A ++F+ M L G  PD V + S++   +N +  ++   VHG + 
Sbjct: 267 WTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVIT 326

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           R   +  + +  ++I +Y K G L+ A   FD M  ++++SW+++I     H    EAL 
Sbjct: 327 RSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALC 386

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F+QM +  + PDH+ FV +LSAC+H G +  G   F  M   +G++PR EHYACMV+L 
Sbjct: 387 LFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLL 445

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA + I E+M       VWGALL AC +H N+   ETAA+ LF L+ +N   +
Sbjct: 446 GRAGRLSEAQAFI-ERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRY 504

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  IY ++G+  + + +  ++  RG+ 
Sbjct: 505 ILLSNIYASSGKRKEADDIRALMKSRGVR 533



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 228/464 (49%), Gaps = 48/464 (10%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           +L++ C  L+A++    LH  I  + L  +  + + L+  YA+ G I  A+ +F   ++ 
Sbjct: 9   ALIKQCVTLEALK---SLHASILKSHLHPH--LCTSLIAQYASLGSISHAYALFS--TSH 61

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           ++  F WN +I  ++      +++ LY +M + G++   FTFP +LKAC  L    +G +
Sbjct: 62  SSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGAR 121

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            H   V FG+  D FV N+L+ MY + G    +R VF+R+  ++++S++SM+  Y H+G 
Sbjct: 122 AHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGR 181

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
             E   +F  M+  G  P+  +I + +A              V+  G++ D  + N+ + 
Sbjct: 182 YEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMG 241

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLT 392
           +Y++ G++D A   F  +  KD+V+W S+I A+ +      AL  F+QM+  G++PD +T
Sbjct: 242 MYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVT 301

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKY-----------------------------GIS 423
            +SL+ A ++L S ++   +  V+   +                              +S
Sbjct: 302 LLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMS 361

Query: 424 PR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGE- 479
            R +  ++ M++ YG  G   EA  +  ++M+    P  + +  +L AC   G +  G  
Sbjct: 362 ARNLISWSTMISGYGMHGHGREALCLF-DQMKASIKPDHIAFVMVLSACSHGGLIAEGWE 420

Query: 480 --TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERMLV 520
              A  + F + P  EH +  ++ + G AGRL + +  +ERM +
Sbjct: 421 CFKAMNRDFGVTPRTEH-YACMVDLLGRAGRLSEAQAFIERMPI 463


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 247/446 (55%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     TF+S+L     +  +  G ++H L+  +    N  +++ LL  Y+    +D+ 
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M  R   ++  N +I+ YA        + L+ +M++ G +     +  +L    
Sbjct: 291 RRLFDEMPERDNVSY--NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  + +G+++H   V  G   +  + NAL+DMY+KCG +  A++ F     K  IS+ +
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 408

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           ++TGY+ +G   EA  +F  M   G  PD    SSI+  +S   ++ +G Q+H +++R G
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIYFE 379
            +  +   + L+ +Y+K G LD+A   FD MP+++ +SWN++I A++   EA   +  FE
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 528

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M   G  PD +TF+S+L+AC+H G      + F +M  +Y ISP  EHYAC+++  GR 
Sbjct: 529 GMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRV 588

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G   +   M+VE M F+A P++W ++L++C +HGN  +   AA KLF +EP +   + +L
Sbjct: 589 GCFSQVQKMLVE-MPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVIL 647

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY  AG+ +D   V++++ DRG+ 
Sbjct: 648 SNIYARAGQWEDAACVKKIMRDRGVR 673



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 188/367 (51%), Gaps = 17/367 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + LL  Y   GL+  A +VF +M ++ A  +  N+++ G ++ G +  A+ L+  M  
Sbjct: 172 VCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY--NAMMMGCSKEGLHTQALQLFAAMRR 229

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+    FTF  +L   AG+  + +G +VH   +R     + FV N+L+D Y+KC  +  
Sbjct: 230 AGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDD 289

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
            R +FD +  +D +SYN ++  Y  +        +FR M   GFD   +  +++L+ A  
Sbjct: 290 MRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGS 349

Query: 308 L---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L    IG Q+H  ++  G+  +  + N+LI +YSK G LD A   F +  +K  +SW ++
Sbjct: 350 LPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL 409

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++    EAL  F  M R G+ PD  TF S++ A + L  + +G +L S ++ + G
Sbjct: 410 ITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLI-RSG 468

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
               V   + +V++Y + G +DEA     E  E  +  + W A++ A Y H     GE  
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS--ISWNAVISA-YAH----YGEAK 521

Query: 482 -AQKLFE 487
            A K+FE
Sbjct: 522 NAIKMFE 528



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 169/343 (49%), Gaps = 20/343 (5%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  Y++ G +  A  +F    +R A    W  ++  +A  G   DA++L+  M  EGV 
Sbjct: 80  ILSAYSSSGDLPAAQHLFLSSPHRNATT--WTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 192 PDQFTFPRVLK--ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           PD+ T   VL    C    L       H  A++FG     FV N L+D Y K G +  AR
Sbjct: 138 PDRVTVTTVLNLPGCTVPSL-------HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAAR 190

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            VF  + +KD ++YN+M+ G    GL  +A  +F  M   G        SSIL   A  +
Sbjct: 191 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMA 250

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L +G QVH  VLR     ++ + NSL+  YSK   LD    LFD MP++D VS+N II 
Sbjct: 251 HLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 367 AHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           A++ +  A   L  F +M++ G     L + ++LS    L  V +G+++ + +V   G++
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV-LLGLA 369

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
                   ++++Y + G++D A S    +   E S + W AL+
Sbjct: 370 SEDLLGNALIDMYSKCGMLDAAKSNFSNRS--EKSAISWTALI 410



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F LN ++  Y+  GD+  A+ +F    +++  ++  M+  +   G   +A  +FR M+  
Sbjct: 75  FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 134

Query: 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           G  PD V ++++L N     + + +H + ++ G++  + + N+L+  Y K G L  A  +
Sbjct: 135 GVIPDRVTVTTVL-NLPGCTVPS-LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F  M  KD V++N+++   SK+    +AL  F  M R G+   H TF S+L+  A +  +
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 407 KVGERLFSVMVEKYGI 422
            +G ++ ++++    +
Sbjct: 253 LLGHQVHALVLRSTSV 268


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 246/445 (55%), Gaps = 61/445 (13%)

Query: 129 SSKLLRLYATFGL----IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL--- 181
           ++++LR  AT  L    +D AH++F+QM  R  F+  WN++I G++E  E +  IA+   
Sbjct: 58  AAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS--WNTIIRGFSESDEDKALIAITLF 115

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           Y  M +E VEP++FTFP VLKACA  G I+ G+++H  A+++GFG D FV++ LV MY  
Sbjct: 116 YEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVM 175

Query: 242 C---------------------------------------------GDIVKARTVFDRIG 256
           C                                             GD   AR +FD++ 
Sbjct: 176 CGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMR 235

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQ 313
            + ++S+N+M++GY  +G   +A ++FR M      P+ V + S+L   S    L +G  
Sbjct: 236 QRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEW 295

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
           +H +    G+  D  + ++LI +YSK G +++A  +F+ +P+++V++W+++I+    H +
Sbjct: 296 LHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQ 355

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             +A+  F +M + GV P  + +++LL+AC+H G V+ G R FS MV   G+ PR+EHY 
Sbjct: 356 AGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYG 415

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L GR+GL+DEA   I+  M  +   V+W ALL AC + GNV MG+  A  L ++ P
Sbjct: 416 CMVDLLGRSGLLDEAEEFIL-NMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVP 474

Query: 491 DNEHNFELLIKIYGNAGRLDDVERV 515
            +   +  L  +Y + G   +V  +
Sbjct: 475 HDSGAYVALSNMYASQGNWSEVSEM 499



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L    +L ++E G  LH     + +R +  + S L+ +Y+  G+I++A  VF+++
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    W+++I+G+A  G+  DAI  + +M + GV P    +  +L AC+  GL+  
Sbjct: 336 PRENVIT--WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEE 393

Query: 213 GEK 215
           G +
Sbjct: 394 GRR 396


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 248/448 (55%), Gaps = 9/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+ +   TF  +L+ C +  + + GI LH L+       +    + LL +Y+  G ++
Sbjct: 104 KHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLN 163

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +AH++FD++ +R+     W +L SGY   G + +AI L+ +M E GV+PD +   +VL A
Sbjct: 164 DAHKLFDEIPDRSVVT--WTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  +G +  GE +           + FV   LV++YAKCG + KAR+VFD +  KD++++
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASL--LRIGAQVHGWVLR 320
           ++M+ GY  +    E  ++F  M+     PD  +I   L++ ASL  L +G      + R
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-HEALIY-- 377
                +L +AN+LI +Y+K G + +   +F  M +KD+V  N+ I   +K+ H  L +  
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F Q E+ G+ PD  TF+ LL  C H G ++ G R F+ +   Y +   VEHY CMV+L+G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWG 461

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG++D+AY +I + M    + +VWGALL  C L  +  + ET  ++L  LEP N  N+ 
Sbjct: 462 RAGMLDDAYRLICD-MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYV 520

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L  IY   GR D+   V  M+  +G++
Sbjct: 521 QLSNIYSVGGRWDEAAEVRDMMNKKGMK 548



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 165/303 (54%), Gaps = 11/303 (3%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F +NSLI+G+     + + + L+  + + G+    FTFP VLKAC      ++G  +H  
Sbjct: 77  FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSL 136

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            V+ GF  D   + +L+ +Y+  G +  A  +FD I ++ ++++ ++ +GY   G   EA
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG-WVLRRGVEWDL----CIANSLI 334
            D+F+ M+  G  PD   I  +L  ++ + +G    G W+++   E ++     +  +L+
Sbjct: 197 IDLFKKMVEMGVKPDSYFIVQVL--SACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLV 254

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHL 391
            +Y+K GK+++A  +FD M +KD+V+W+++I  ++ +    E +  F QM ++ + PD  
Sbjct: 255 NLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQF 314

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           + V  LS+CA LG++ +GE   S +++++     +     ++++Y + G +   + +  E
Sbjct: 315 SIVGFLSSCASLGALDLGEWGIS-LIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373

Query: 452 KME 454
             E
Sbjct: 374 MKE 376



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 49/372 (13%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+   +     +L  C  +  ++ G  + + +    ++KN  + + L+ LYA  G +
Sbjct: 204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  VFD M  +      W+++I GYA     ++ I L+ QM +E ++PDQF+    L 
Sbjct: 264 EKARSVFDSMVEKDIVT--WSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           +CA LG + +GE       R  F  + F+ NAL+DMYAKCG + +   VF  +  KD++ 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHG--- 316
            N+ ++G   +G +  +F +F      G  PD      +L    +A L++ G +      
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 317 --WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
             + L+R VE   C+ +    ++ + G LD A  L   MP +                  
Sbjct: 442 CVYALKRTVEHYGCMVD----LWGRAGMLDDAYRLICDMPMR------------------ 479

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMV 433
                        P+ + + +LLS C  +   ++ E   +V+ E   + P    +Y  + 
Sbjct: 480 -------------PNAIVWGALLSGCRLVKDTQLAE---TVLKELIALEPWNAGNYVQLS 523

Query: 434 NLYGRAGLIDEA 445
           N+Y   G  DEA
Sbjct: 524 NIYSVGGRWDEA 535


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/513 (31%), Positives = 255/513 (49%), Gaps = 48/513 (9%)

Query: 51  KSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE-- 108
           K     L  N + F K+         +   S       + T+TF  LL+ C  L+ ++  
Sbjct: 214 KDGSMRLYINYREFNKSXSTERWPSXKKFASYTNRNAHMNTQTFYFLLQKCGSLEKLKQI 273

Query: 109 HGIKLHRLIPTNLL-RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
           HG    + +   LL  K + ++ KLL  Y   G   +A +VF+ + N    +  W  LIS
Sbjct: 274 HG----KAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVS--WTCLIS 327

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
            Y    +   A +++  +   G+ PD F     + AC     +  G  VH    RF  G 
Sbjct: 328 LYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGS 387

Query: 228 DGFVLNALVDMYA-------------------------------KCGDIVKARTVFDRIG 256
           D  V NAL+DMY+                               KC DI  AR +FD + 
Sbjct: 388 DPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMP 447

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-PDPVAISSIL---ANASLLRIGA 312
            ++ +S+ +M+TGY+   + +   ++F+ M   G D P  + I ++L   A+     +G+
Sbjct: 448 MRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGS 507

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
            VHG+V +  ++ D+ + N+L+ +Y+K G L  A  +F  MP++DV SW ++I     H 
Sbjct: 508 SVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHG 567

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           K   AL  F  M + G  P+ +T +S+LSAC+H G V  G  LF  MV+ +GI P+++HY
Sbjct: 568 KGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHY 627

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            CMV+L GRAGL+ EA  +I E M  +   V+W +LL AC +HGN+ + E A + + ELE
Sbjct: 628 GCMVDLLGRAGLLREAKELI-EHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELE 686

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           PD++  + LL  IY +A R +D  +  + + DR
Sbjct: 687 PDDDGVYILLWNIYCSASRWEDALKARKAMRDR 719


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 158/431 (36%), Positives = 236/431 (54%), Gaps = 44/431 (10%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G +D A Q  D M+ +   A  WN++ISGY   G + +A+ ++ +M   G++ D+F
Sbjct: 235 YVRNGELDAARQFLDGMTEKLVVA--WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEF 292

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRF----GFGFDGFVLNALVDMYAKCGDIVKARTV 251
           T+  VL ACA  G    G++VH   +R        F   V NAL  +Y KCG + +AR V
Sbjct: 293 TYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQV 352

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEA-------------------------------F 280
           F+++  KDL+S+N++L+GY++ G + EA                                
Sbjct: 353 FNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESL 412

Query: 281 DIFRGMILNGFDPDPVAIS-SILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            +F  M   GF+P   A + +I+A A L  L  G Q+H  ++R G +  L   N+LI +Y
Sbjct: 413 KLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMY 472

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           +K G ++ A  LF  MP  D VSWN++I A   H    +AL  FE M ++ +LPD +TF+
Sbjct: 473 AKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFL 532

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           ++LS C+H G V+ G R F  M   YGI P  +HYA M++L  RAG   EA  MI E M 
Sbjct: 533 TVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMI-ETMP 591

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            E  P +W ALL  C +HGN+ +G  AA++LFEL P ++  + LL  +Y   GR DDV +
Sbjct: 592 VEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAK 651

Query: 515 VERMLVDRGLE 525
           V +++ D+G++
Sbjct: 652 VRKLMRDKGVK 662



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 220/513 (42%), Gaps = 128/513 (24%)

Query: 94  FASLLETCYQLKAVEHGI--KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +A+ L+ C     + + I   +H  +  +  +    I ++L+ +Y     +  AH +FD+
Sbjct: 16  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 152 MSN-----RTA------------------FAFP--------WNSLISGYAELGEYEDAIA 180
           +       RT                   FA P        +N++I+GY+   +   AI 
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK----VHLDAVRFGFGFDGFVLNALV 236
           L+  +   G  PD FTF  VL A   L LI   EK    +H   V+ G GF   VLNAL+
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGA---LALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALL 192

Query: 237 DMYAKCG---------DIVKARTVFDRIGNKD---------------------------- 259
            ++ KC           +  AR +FD +  +D                            
Sbjct: 193 SVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT 252

Query: 260 ---LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ 313
              ++++N+M++GY+HHG  +EA ++FR M L G   D    +S+L   ANA     G Q
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 314 VHGWVLRR----GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
           VH ++LR      +++ L + N+L  +Y K GK+D+A  +F+ MP KD+VSWN+I+  + 
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYV 372

Query: 370 K----------------------------------DHEALIYFEQMERDGVLPDHLTFVS 395
                                                E+L  F +M+ +G  P    F  
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
            + ACA L ++  G +L + +V + G    +     ++ +Y + G+++ A+ + +     
Sbjct: 433 AIIACAWLAALMHGRQLHAQLV-RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL 491

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           ++  V W A++ A   HG+       A +LFEL
Sbjct: 492 DS--VSWNAMIAALGQHGH----GAQALELFEL 518



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 162/400 (40%), Gaps = 78/400 (19%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLI----PTNLLRKNKGISSKLLRLYATFGL 141
           GI     T+ S+L  C       HG ++H  I    P   L  +  +++ L  LY   G 
Sbjct: 286 GIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGK 345

Query: 142 IDEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAEL 172
           +DEA QVF+QM  +   ++                              W  +ISG A+ 
Sbjct: 346 VDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQN 405

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G  E+++ L+ +M+ EG EP  + F   + ACA L  +  G ++H   VR GF       
Sbjct: 406 GFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAG 465

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           NAL+ MYAKCG +  A  +F  +   D +S+N+M+     HG   +A ++F  M+     
Sbjct: 466 NALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDIL 525

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS----LIVVYSKDGKLDQACW 348
           PD +   ++L+  S   +  + H +       + +C        +I +  + GK  +A  
Sbjct: 526 PDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKD 585

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
           + + MP                               V P    + +LL+ C   G++ +
Sbjct: 586 MIETMP-------------------------------VEPGPPIWEALLAGCRIHGNMDL 614

Query: 409 G----ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G    ERLF +M +  G       Y  + N+Y   G  D+
Sbjct: 615 GIQAAERLFELMPQHDGT------YVLLSNMYATVGRWDD 648



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 152/366 (41%), Gaps = 95/366 (25%)

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI---------------- 255
           +   VH   +  GF   G++LN L+D+Y K  D+V A  +FD I                
Sbjct: 33  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 92

Query: 256 -----------------GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
                            G +D + YN+M+TGY H+     A ++FR ++ NGF PD    
Sbjct: 93  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152

Query: 299 SSILANASLL----RIGAQVHGWVLRRGVEWDLCIANSLIVV------------------ 336
           +S+L   +L+    +   Q+H  V++ G  +   + N+L+ V                  
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212

Query: 337 ----------------------YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
                                 Y ++G+LD A    D M +K VV+WN++I     H   
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF 272

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYA 430
            EAL  F +M   G+  D  T+ S+LSACA+ G    G+++ + ++      PR    ++
Sbjct: 273 LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR---TEPRPSLDFS 329

Query: 431 CMVN-----LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
             VN     LY + G +DEA   +  +M  +   V W A+L      G +      A+  
Sbjct: 330 LSVNNALATLYWKCGKVDEA-RQVFNQMPVK-DLVSWNAILSGYVNAGRI----DEAKSF 383

Query: 486 FELEPD 491
           FE  P+
Sbjct: 384 FEEMPE 389


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 259/507 (51%), Gaps = 77/507 (15%)

Query: 89  VQTETFASLLETC---YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           V +  F SLLE C    QLK ++  + L  LI           SS+L+   A     D  
Sbjct: 48  VLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGF------ASSRLIAFCAISEWRDLD 101

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKAC 204
           +      + R    F WN  I G+ +     +A+ LY + ++ +G +PD +T+P + KAC
Sbjct: 102 YCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKAC 161

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV-------------DMYAK---------- 241
           A L LIR+G ++    +  GF  D FV NA++              M+ K          
Sbjct: 162 ARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWN 221

Query: 242 ------CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM--------- 286
                 CG++  AR +FD + NK ++S+ +M+ GY   GLL  A+ +F  M         
Sbjct: 222 SMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWN 281

Query: 287 -ILNGF---------------------DPDPVAISSILANAS---LLRIGAQVHGWVLRR 321
            ++ G+                     +PD V + S L+  S    L +G  +H ++ + 
Sbjct: 282 AMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKH 341

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
            +  ++ +  +LI +Y+K GK+ +A  +F  +P ++ ++W +II     H   H A+ YF
Sbjct: 342 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYF 401

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M  + V+PD +TF+ LLSAC H G V+ G + FS M  K+ +SP+++HY+CMV+L GR
Sbjct: 402 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 461

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL++EA  +I + M  EA  VVWGAL +AC +HGNV MGE AA KL +++P +   + L
Sbjct: 462 AGLLEEAEELI-KSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVL 520

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  +YG A    +  +  +++  RG+E
Sbjct: 521 LANMYGEAEMWKEAGKARKLMRQRGVE 547


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 246/450 (54%), Gaps = 13/450 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            +G+       +S+L+ C    A + G ++H  +       +  I   L+ +YA    +D
Sbjct: 203 SSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 262

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VFD MS+R      WN+LISG +  G +++A ++++ + +EG+  ++ T   VLK+
Sbjct: 263 DAMKVFDWMSHRDLIL--WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A L       +VH  A + GF FD  V+N L+D Y KC  +  A  VF+   + D+I+ 
Sbjct: 321 TASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAV 380

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
            SM+T          A  +F  M+  G +PDP  +SS+L   A+ S    G QVH  +++
Sbjct: 381 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 440

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEAL 375
           R    D    N+L+  Y+K G ++ A   F  +P++ VVSW+++I     H H K   AL
Sbjct: 441 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK--RAL 498

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +M  +G+ P+H+T  S+L AC H G V   +R F+ M E +GI    EHY+CM++L
Sbjct: 499 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 558

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG +D+A  + V  M F+A+  VWGALL A  +H +  +G+ AA+KLF LEP+    
Sbjct: 559 LGRAGKLDDAMEL-VNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGT 617

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             LL   Y ++G  ++V +V +++ D  ++
Sbjct: 618 HVLLANTYASSGMWNEVAKVRKLMKDSNIK 647



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 173/319 (54%), Gaps = 10/319 (3%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM-SNRTAFAFPWNSLISG 168
           G ++H +        +  +++ L+ +Y  FG +D+A +VFD+  S R A +  WN L+S 
Sbjct: 26  GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS--WNGLMSA 83

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y +  +  DAI ++ +M   G++P +F F  V+ AC G   I  G +VH   VR G+  D
Sbjct: 84  YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 143

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            F  NALVDMY K G +  A  +F+++ + D++S+N++++G + +G    A ++   M  
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G  P+   +SSIL   A A    +G Q+HG++++   + D  I   L+ +Y+K+  LD 
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 263

Query: 346 ACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD M  +D++ WN++I   +H   H EA   F  + ++G+  +  T  ++L + A 
Sbjct: 264 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 323

Query: 403 LGSVKVGERLFSVMVEKYG 421
           L +     R    + EK G
Sbjct: 324 LEAASA-TRQVHALAEKIG 341



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 14/296 (4%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M  EGV  ++F  P VLK        ++G +VH  A+  GFG D FV NALV MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 245 IVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
           +  AR VFD  G+ ++ +S+N +++ Y+ +    +A  +F  M+ +G  P     S ++ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 304 NASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             +  R    G QVH  V+R G E D+  AN+L+ +Y K G++D A  +F+ MP  DVVS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WN++I     +  DH A+    QM+  G++P+     S+L ACA  G+  +G ++   M+
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +    S        +V++Y +   +D+A  M V         ++W AL+  C  HG
Sbjct: 238 KANADSDDYIGVG-LVDMYAKNHFLDDA--MKVFDWMSHRDLILWNALISGCS-HG 289



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 7/193 (3%)

Query: 286 MILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           M   G   +  A+  +L      ++GAQVH   +  G   D+ +AN+L+ +Y   G +D 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 60

Query: 346 ACWLFDHM-PQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACA 401
           A  +FD    +++ VSWN ++ A+ K+ +   A+  F +M   G+ P    F  +++AC 
Sbjct: 61  ARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 120

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
              ++  G ++ + MV + G    V     +V++Y + G +D A S+I EKM  ++  V 
Sbjct: 121 GSRNIDAGRQVHA-MVVRMGYEKDVFTANALVDMYVKMGRVDIA-SVIFEKMP-DSDVVS 177

Query: 462 WGALLYACYLHGN 474
           W AL+  C L+G+
Sbjct: 178 WNALISGCVLNGH 190



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+       +SLL  C  L A E G ++H  +       +    + L+  YA  G I
Sbjct: 404 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 463

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A   F  +  R   +  W+++I G A+ G  + A+ L+ +M +EG+ P+  T   VL 
Sbjct: 464 EDAELAFSSLPERGVVS--WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 521

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFD 228
           AC   GL+   ++ + ++++  FG D
Sbjct: 522 ACNHAGLVDEAKR-YFNSMKEMFGID 546


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 235/452 (51%), Gaps = 13/452 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISS 130
           +I   L+     G+     T  SLL    Q  A+  G  +H       L +N+    I +
Sbjct: 185 AIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGT 244

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            LL +YA    +  A +VF  M  R      W++LI G+       +A  L+  M  EG+
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVRNDVT--WSALIGGFVLCDRMTEAFNLFKDMLVEGL 302

Query: 191 E-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
                 +    L+ CA L  + +G ++H    + G   D    N+L+ MYAK G I +A 
Sbjct: 303 CFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEAT 362

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--- 306
             FD I  KD ISY ++L+G + +G   EAF +F+ M     +PD   + S++   S   
Sbjct: 363 MFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLA 422

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L+ G   HG V+ RG+  +  I NSLI +Y+K GK+D +  +FD MP +DVVSWN++I 
Sbjct: 423 ALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA 482

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               H    EA   F  M+  G  PD +TF+ L++AC+H G V  G+  F  M  KYGI 
Sbjct: 483 GYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL 542

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           PR+EHY CMV+L  R GL+DEAY  I + M  +A   VWGALL AC +H N+ +G+  ++
Sbjct: 543 PRMEHYICMVDLLARGGLLDEAYQFI-QSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            + +L P+   NF LL  I+  AGR D+   V
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEV 633



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 200/381 (52%), Gaps = 18/381 (4%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           K+K    + L  + + G +  A QVFD++    A A+  N+LI  Y+ LG +  AI LY 
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAY--NALIRAYSWLGPFHAAIDLYR 89

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M    V P+++TFP VLKAC+ L  +R G  +H  A   G   D FV  AL+D+Y +C 
Sbjct: 90  SMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCA 149

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDP---VAIS 299
               AR VF ++  +D++++N+ML GY +HG+   A      M  + G  P+    V++ 
Sbjct: 150 RFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLL 209

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWD---LCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
            +LA    L  G  +H + LR  +E +   + I  +L+ +Y+K  +L  AC +F  MP +
Sbjct: 210 PLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR 269

Query: 357 DVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFV-SLLSACAHLGSVKVGERL 412
           + V+W+++I       +  EA   F+ M  +G+     T V S L  CA L  + +G +L
Sbjct: 270 NDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQL 329

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            + ++ K GI   +     ++++Y +AGLI+EA +M  +++  + + + +GALL  C  +
Sbjct: 330 HA-LIAKSGIHADLTASNSLLSMYAKAGLINEA-TMFFDEIAVKDT-ISYGALLSGCVQN 386

Query: 473 GNVCMGETAAQKL--FELEPD 491
           G         +K+    +EPD
Sbjct: 387 GKAEEAFLVFKKMQACNMEPD 407


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 254/443 (57%), Gaps = 15/443 (3%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           VQ+  FA  + +C    +V +   +H  +  +L   +  I  +L+ +Y   G  ++A ++
Sbjct: 122 VQSLVFA--ISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRL 176

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGL 207
           FD+M N+   +  WNSL+SG +  G     +  + +M  E G +P++ T   V+ ACA +
Sbjct: 177 FDEMPNKDLVS--WNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADM 234

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G +  G+ +H   V+ G      V+N+L++MY K G +  A  +F+ +  + L+S+NSM+
Sbjct: 235 GALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 294

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
             + H+G   +  D+F  M   G +PD   + ++L    +  L R    +H ++ R G  
Sbjct: 295 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN 354

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM 381
            D+ IA +L+ +Y+K G+L+ +  +F+ +  +D ++W +++     H+   EA+  F+ M
Sbjct: 355 ADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLM 414

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            ++GV  DH+TF  LLSAC+H G V+ G++ F +M E Y + PR++HY+CMV+L GR+G 
Sbjct: 415 VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGR 474

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
           +++AY +I + M  E S  VWGALL AC ++GNV +G+  A++L  L+P +  N+ +L  
Sbjct: 475 LEDAYELI-KSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSN 533

Query: 502 IYGNAGRLDDVERVERMLVDRGL 524
           IY  AG   D  +V  ++ +R L
Sbjct: 534 IYSAAGLWRDASKVRALMKERRL 556


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 248/449 (55%), Gaps = 13/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G      TF  LL+ C        G ++H ++    L  +  + + L+R Y   G  
Sbjct: 97  VRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDF 156

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD+M  R   +  WNSLISG+ + G +++AI+++F+M+   VEP   T   VL 
Sbjct: 157 SCAGKVFDEMLVRDVVS--WNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLA 211

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA  G +  G+ +H   +   F  +  + NA++DMY K G   +A+ +FD +  +D++S
Sbjct: 212 ACARNGDLCTGKGIH-GVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVS 270

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVL 319
           +  M+TG +      ++ ++F  M   G  PD + ++S+L A ASL  L  G  VH ++ 
Sbjct: 271 WTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYIN 330

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +RG++WD+ I  +++ +Y+K G ++ A  +F  M Q++  +WN+++     H   HEAL 
Sbjct: 331 QRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALN 390

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE M   GV P+ +TF+++L+AC H G V  G + F  M + Y + P++EHY CM++L+
Sbjct: 391 LFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLF 450

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            RAGL++EA  +    M  +   ++WG LL AC   GN+ +       + EL+ D+   F
Sbjct: 451 CRAGLLEEAVEL-ARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVF 509

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  I     R  +V R+ R++ DRG+ 
Sbjct: 510 VLLSNISAINQRWSNVTRLRRLMKDRGVR 538



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 222/429 (51%), Gaps = 28/429 (6%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-GLIDEAHQVFDQMSNR 155
           LL++    K +    ++H  + T+ L  +  ++SK++  +A F    D A    +Q + R
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR 67

Query: 156 TAFAFPWNSLISGYAELGEY-EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
              +FP+NSLI+GY   GE+ + A+++Y +M  +G  PD FTFP +LKAC+     R G 
Sbjct: 68  LG-SFPFNSLINGYVG-GEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 125

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH   V+ G   D +V N+L+  Y  CGD   A  VFD +  +D++S+NS+++G++  G
Sbjct: 126 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 185

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIAN 331
              EA  +F  M     +P    + S+LA  +    L  G  +HG V+ R  + +L + N
Sbjct: 186 HFDEAISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHG-VIERRFKVNLVLGN 241

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-DH--EALIYFEQMERDGVLP 388
           +++ +Y K+G   +A  +FD +P +D+VSW  +I    + DH  ++L  F  M   G+ P
Sbjct: 242 AMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISP 301

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +   S+LSACA LG++  G  +    + + GI   +     +V++Y + G I+ A  +
Sbjct: 302 DAIILTSVLSACASLGTLDFGTWVHE-YINQRGIKWDIHIGTAIVDMYAKCGCIEMALKI 360

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKI 502
                  + +   W ALL    +HG V      A  LFE      ++P NE  F  ++  
Sbjct: 361 FYSMS--QRNTFTWNALLCGLAMHGLV----HEALNLFEVMIISGVKP-NEITFLAILTA 413

Query: 503 YGNAGRLDD 511
             + G +D+
Sbjct: 414 CCHCGLVDE 422


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 246/442 (55%), Gaps = 13/442 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           V T   +SL  T Y    V  G ++H +   N L     +S+ L+ +Y+    ++EA ++
Sbjct: 212 VFTAVLSSLAATVY----VGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKM 267

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD   +R +    W+++++GY++ GE  +AI L+ +M   G++P ++T   VL AC+ + 
Sbjct: 268 FDSSGDRNSI--TWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDIC 325

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G+++H   ++ GF    F   ALVDMYAK G +  AR  FD +  +D+  + S+++
Sbjct: 326 YLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS 385

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDP-DPVAISSILANASL--LRIGAQVHGWVLRRGVEW 325
           GY+ +    EA  ++R M   G  P DP   S + A +SL  L +G QVHG  ++ G   
Sbjct: 386 GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGL 445

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           ++ I ++L  +Y+K G L+    +F   P KDVVSWN++I   S +    EAL  FE+M 
Sbjct: 446 EVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEML 505

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +G  PD +TFV+++SAC+H G V+ G   F +M +++G+ P+V+HYACMV++  RAG +
Sbjct: 506 AEGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQL 565

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            E    I E    +    +W  LL AC  HGN  +G  A +KL  L       +  L  I
Sbjct: 566 KETKEFI-ESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGI 624

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y   GR+ DVERV +++   G+
Sbjct: 625 YTALGRMRDVERVWKLMRTNGV 646



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T   +L  C  +  +  G +LH  +      ++   ++ L+ +YA  G + +A
Sbjct: 306 GIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADA 365

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + FD +  R      W SLISGY +  + E+A+ LY +M+  G+ P+  T   VLKAC+
Sbjct: 366 RKGFDCLQERDVAL--WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 423

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  + +G++VH   ++ GFG +  + +AL  MY KCG +     VF R  NKD++S+N+
Sbjct: 424 SLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNA 483

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           M++G  H+G   EA ++F  M+  G +PD V   +I++  S
Sbjct: 484 MISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACS 524



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 184/390 (47%), Gaps = 49/390 (12%)

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVD 237
           ++ F  E+E      + F  VL + A    + +G ++H   V+   G  GFV   NALV 
Sbjct: 196 SICFLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVK--NGLLGFVALSNALVT 253

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
           MY+KC  + +A  +FD  G+++ I++++M+TGY  +G  +EA  +F  M   G  P    
Sbjct: 254 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYT 313

Query: 298 ISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           I  +L   S    L  G Q+H ++L+ G E  L    +L+ +Y+K G L  A   FD + 
Sbjct: 314 IVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ 373

Query: 355 QKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           ++DV  W S+I  +   S + EALI + +M+  G++P+  T  S+L AC+ L ++++G++
Sbjct: 374 ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ 433

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLI----------------------------- 442
           +    + K+G    V   + +  +Y + G +                             
Sbjct: 434 VHGHTI-KHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNG 492

Query: 443 --DEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHN 495
             DEA  +  E +     P  V +  ++ AC   G V  G +    +   F L+P  +H 
Sbjct: 493 QGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDH- 551

Query: 496 FELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
           +  ++ +   AG+L +  E +E   +D GL
Sbjct: 552 YACMVDVLSRAGQLKETKEFIESASIDHGL 581



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 181/386 (46%), Gaps = 53/386 (13%)

Query: 88  TVQTETFASLLETCYQLKAVEH-----GIKLHRLIPTNLLRKNKGISSK----LLRLYAT 138
           T QTE       T   LKA+ H      +   R +   ++R      ++    L+  YA 
Sbjct: 5   TFQTE-INPFSHTSTLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAK 63

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA---IALYFQMEEEGVEPDQF 195
            G + +AH +F+ +  +   +  WNSLI+GY++ G    +   + L+ +M  + + P+ +
Sbjct: 64  CGQLAKAHSIFNAIICKDVVS--WNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAY 121

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   + KA + L    VG + H   V+     D +V  +LV MY K G            
Sbjct: 122 TLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG------------ 169

Query: 256 GNKDLISYNSMLTGYIHHGL-LVEAFDIFRGMILNGF----------DPDPV--AISSIL 302
                + Y  M    +++G  L    D+ R  + +            D D V  A+ S L
Sbjct: 170 -----LKYLYM----VYYGFWLCYKKDVLRRQLKSSICFLEEKEKESDSDYVFTAVLSSL 220

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A    + +G Q+HG  ++ G+   + ++N+L+ +YSK   L++AC +FD    ++ ++W+
Sbjct: 221 AATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWS 280

Query: 363 SIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +++  +S++    EA+  F +M   G+ P   T V +L+AC+ +  +  G++L S ++ K
Sbjct: 281 AMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLL-K 339

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEA 445
            G    +     +V++Y +AG + +A
Sbjct: 340 LGFERHLFATTALVDMYAKAGCLADA 365



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH   +R G        N LV+ YAKCG + KA ++F+ I  KD++S+NS++TGY  
Sbjct: 35  GRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQ 94

Query: 273 HGLLVEA---FDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWD 326
           +G +  +     +FR M      P+   ++ I    S L+   +G Q H  V++     D
Sbjct: 95  NGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGD 154

Query: 327 LCIANSLIVVYSKDG--KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
           + +  SL+ +Y K G   L    + F    +KDV+          +   ++ + E+ E++
Sbjct: 155 IYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVL--------RRQLKSSICFLEEKEKE 206

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
                   F ++LS+ A    V +G ++  + V K G+   V     +V +Y +   ++E
Sbjct: 207 S--DSDYVFTAVLSSLAATVYVGLGRQIHGITV-KNGLLGFVALSNALVTMYSKCESLNE 263

Query: 445 AYSMIVEKMEFEASPVVWGALL 466
           A  M       + + + W A++
Sbjct: 264 ACKMF--DSSGDRNSITWSAMV 283


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 243/449 (54%), Gaps = 13/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q G+     +F S+L +CY         ++ R+       ++  + + L+ ++     +
Sbjct: 533 LQGGVLPDALSFTSVLSSCY----CSQEAQVLRMCILESGYRSACLETALISMHGRCREL 588

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  VFD+M +    +  W +++S  AE  ++++   L+ +M+ EGV PD+FT    L 
Sbjct: 589 EQARSVFDEMDHGDVVS--WTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLD 646

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C     + +G+ +H      G   D  V NAL++MY+ CGD  +A + F+ +  +DL+S
Sbjct: 647 TCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N M   Y   GL  EA  +FR M L G  PD +  S+ L     ++L+  G   HG   
Sbjct: 707 WNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAA 766

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
             G++ D+ +A  L+ +Y+K GKLD+A  LF    Q  VV  N+II A   H    EA+ 
Sbjct: 767 ESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVK 826

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M+++GV PD  T VS++SAC H G V+ G   F  M E +GISP +EHYAC V+L 
Sbjct: 827 MFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLL 886

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++ A   I+ KM FE + +VW +LL  C L G+  +GE  AQ++ EL+P N    
Sbjct: 887 GRAGQLEHA-EQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAH 945

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +L  IY   G+  D +   + L+D+ ++
Sbjct: 946 VVLSNIYCATGKWKDADVDRKKLLDQNVK 974



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 227/481 (47%), Gaps = 57/481 (11%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN---KGISSKLLRLYATFGLI 142
           GI     +F ++L  C   +A++ G K+H LI T   R++     +++ L+ +Y   G I
Sbjct: 432 GIDPNKVSFIAILNACSNSEALDFGRKIHSLILTR--RRDYVESSVATMLVSMYGKCGSI 489

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA  VF +M   +     WN ++  YA+    ++A     +M + GV PD  +F  VL 
Sbjct: 490 AEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLS 549

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           +C      +V     L++     G+    L  AL+ M+ +C ++ +AR+VFD + + D++
Sbjct: 550 SCYCSQEAQVLRMCILES-----GYRSACLETALISMHGRCRELEQARSVFDEMDHGDVV 604

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+ +M++    +    E   +FR M L G  PD   +++ L    +++ L +G  +H  V
Sbjct: 605 SWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACV 664

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEAL 375
              G+E D+ + N+L+ +YS  G   +A   F+ M  +D+VSWN +  A+++     EA+
Sbjct: 665 TEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAV 724

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE-RLFSVMVEKYGISPRVEHYACMVN 434
           + F  M+ +GV PD LTF + L+     GS  V + +LF  +  + G+   V     +V 
Sbjct: 725 LLFRHMQLEGVKPDKLTFSTTLNVSG--GSALVSDGKLFHGLAAESGLDSDVSVATGLVK 782

Query: 435 LYGRAGLIDEAYSMIVEKMEF-------------------EASPVVWG------------ 463
           LY + G +DEA S+     ++                   EA  + W             
Sbjct: 783 LYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 464 --ALLYACYLHGNV---CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
             +++ AC   G V   C      ++ F + P  EH +   + + G AG+L+  E++ R 
Sbjct: 843 LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEH-YACFVDLLGRAGQLEHAEQIIRK 901

Query: 519 L 519
           +
Sbjct: 902 M 902



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 191/402 (47%), Gaps = 15/402 (3%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L  +V+       + + +LL++C     +  G + H LI    L ++  + + L+ +Y  
Sbjct: 13  LSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVR 72

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTF 197
            G ++EAH +F +M  R   +  W +LIS  A+ G +  A AL+  M  E    P+ +T 
Sbjct: 73  CGSLEEAHAIFSKMEERNVVS--WTALISANAQSGAFARAFALFRTMLLESSAAPNSYTL 130

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG----FVLNALVDMYAKCGDIVKARTVFD 253
             +L ACA    + +G  +H      G   +      V NA+++MYAKCG    A  VF 
Sbjct: 131 VAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFL 190

Query: 254 RIGNKDLISYNSMLTGYIHHGLLV-EAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
            I  KD++S+ +M   Y        +A  IFR M+L    P+ +   + L   + LR G 
Sbjct: 191 TIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGT 250

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK---DVVSWNSIIHAH- 368
            +H  +   G+ +D    N+LI +Y K G  + A  +F  M  +   D+VSWN++I A  
Sbjct: 251 WLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASV 310

Query: 369 --SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
              +  +A+  F ++  +G+ P+ +T +++L+A A  G      R F   + + G    V
Sbjct: 311 EAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDV 370

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
                ++++Y + G    A++ +  ++ ++   + W  +L A
Sbjct: 371 VVGNAIISMYAKCGFFSAAWT-VFRRIRWKCDVISWNTMLGA 411



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 192/423 (45%), Gaps = 16/423 (3%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           K H  I  +   ++  + + ++ +YA  G    A  VF ++  +      WN+++    +
Sbjct: 356 KFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDV-ISWNTMLGASED 414

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH-LDAVRFGFGFDGF 230
              +   +  +  M   G++P++ +F  +L AC+    +  G K+H L   R     +  
Sbjct: 415 RKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESS 474

Query: 231 VLNALVDMYAKCGDIVKARTVFDR--IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
           V   LV MY KCG I +A  VF    + ++ L+++N ML  Y  +    EAF     M+ 
Sbjct: 475 VATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQ 534

Query: 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            G  PD ++ +S+L++    +    +   +L  G     C+  +LI ++ +  +L+QA  
Sbjct: 535 GGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYR-SACLETALISMHGRCRELEQARS 593

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +FD M   DVVSW +++ A +++    E    F +M+ +GV+PD  T  + L  C    +
Sbjct: 594 VFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTT 653

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +G ++    V + G+   +     ++N+Y   G   EA S   E M  +A  +V   +
Sbjct: 654 LGLG-KIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFF-ETM--KARDLVSWNI 709

Query: 466 LYACYLHGNVCMGETAAQKLFELE---PDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           + A Y    +        +  +LE   PD +  F   + + G +  + D +    +  + 
Sbjct: 710 MSAAYAQAGLAKEAVLLFRHMQLEGVKPD-KLTFSTTLNVSGGSALVSDGKLFHGLAAES 768

Query: 523 GLE 525
           GL+
Sbjct: 769 GLD 771


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 247/446 (55%), Gaps = 8/446 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G    + T  + + +C +L  +  G+++H  +  +    +  ISS L+ +Y   G ++ A
Sbjct: 202 GFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMA 261

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+QM  +T  A  WNS+ISGY   G+    I L+ +M  EGV+P   T   ++  C+
Sbjct: 262 IEVFEQMPKKTVVA--WNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G+ VH   +R     D F+ ++L+D+Y KCG +  A  +F  I    ++S+N 
Sbjct: 320 RSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNV 379

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M++GY+  G L EA  +F  M  +  +PD +  +S+L   S    L  G ++H  ++ + 
Sbjct: 380 MISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKK 439

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           ++ +  +  +L+ +Y+K G +D+A  +F  +P++D+VSW S+I A   H + + AL  F 
Sbjct: 440 LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFA 499

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M +  + PD +TF+++LSAC H G V  G   F+ MV  YGI PRVEHY+C+++L GRA
Sbjct: 500 EMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRA 559

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EAY ++ +  E      +   L  AC LH N+ +G   A+ L + +PD+   + LL
Sbjct: 560 GRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILL 619

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y +A + D+V  V   + + GL+
Sbjct: 620 SNMYASAHKWDEVRVVRSKMKELGLK 645



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 232/431 (53%), Gaps = 22/431 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+ C  L     G  +H  +    L  +  + S L+ +YA     ++A  +F++M
Sbjct: 108 TYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEM 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WN++IS Y + G +++A+  +  M   G EP+  T    + +CA L  +  
Sbjct: 168 PEKDVAC--WNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNR 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H + +  GF  D F+ +ALVDMY KCG +  A  VF+++  K ++++NSM++GY  
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGL 285

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G  +    +F+ M   G  P    +SS++   + ++ L  G  VHG+ +R  ++ D+ I
Sbjct: 286 KGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFI 345

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGV 386
            +SL+ +Y K GK++ A  +F  +P+  VVSWN +I    A  K  EAL  F +M +  V
Sbjct: 346 NSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYV 405

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF S+L+AC+ L +++ GE + ++++EK   +  V   A ++++Y + G +DEA+
Sbjct: 406 EPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGA-LLDMYAKCGAVDEAF 464

Query: 447 SMIVEKMEFEASP----VVWGALLYACYLHGNVCMG-ETAAQKL-FELEPDNEHNFELLI 500
           S+      F+  P    V W +++ A   HG   +  E  A+ L   ++PD    F  ++
Sbjct: 465 SV------FKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV-TFLAIL 517

Query: 501 KIYGNAGRLDD 511
              G+AG +D+
Sbjct: 518 SACGHAGLVDE 528



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 229/450 (50%), Gaps = 22/450 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + T     LL  C   K+++ G  +H+ + T  L+ +  +   L+ LY +  L D A  V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGL 207
           FD M N    +  WN L++GY +   Y +A+ L+ ++     ++PD +T+P VLKAC GL
Sbjct: 61  FDNMENPCEISL-WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGL 119

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
               +G+ +H   V+ G   D  V ++LV MYAKC    KA  +F+ +  KD+  +N+++
Sbjct: 120 YKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVI 179

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVLRRGVE 324
           + Y   G   EA + F  M   GF+P+ V I++ +++ A LL +  G ++H  ++  G  
Sbjct: 180 SCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQM 381
            D  I+++L+ +Y K G L+ A  +F+ MP+K VV+WNS+I  +    +++     F++M
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRM 299

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYG 437
             +GV P   T  SL+  C+    +  G+      V  Y I  R++      + +++LY 
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGK-----FVHGYTIRNRIQSDVFINSSLMDLYF 354

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV--CMGETAAQKLFELEPDNEHN 495
           + G ++ A ++   K+  ++  V W  ++      G +   +G  +  +   +EPD    
Sbjct: 355 KCGKVELAENIF--KLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPD-AIT 411

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           F  ++        L+  E +  +++++ L+
Sbjct: 412 FTSVLTACSQLAALEKGEEIHNLIIEKKLD 441


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 239/448 (53%), Gaps = 12/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +   TF+ ++  C     +    +LH L  ++       + + LL  Y+  G+++EA
Sbjct: 135 GLVMDGFTFSGVITACCNHVGLIR--QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEA 192

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF+ M         WNS+I  Y +      A+ALY  M   G E D FT   VL   +
Sbjct: 193 EMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFS 252

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG-DIVKARTVFDRIGNKDLISYN 264
            +  +  G + H  A++ GF  +  V + L+DMYAKCG  + ++R VF+ I   DL+ +N
Sbjct: 253 CVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWN 312

Query: 265 SMLTGYIHHG-LLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLR 320
           +M++GY  +  L VEA + FR M   G+ PD    V   S  +N S    G Q H   ++
Sbjct: 313 TMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMK 372

Query: 321 RGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
             +  + + + N+L+ +YSK G L  A  LF  MPQ + V+ NSII     H    E+L 
Sbjct: 373 SEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLN 432

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FEQM    + P  +T VS+LSACAH G V+ G++ F++M + +GI P  EHY+CM++L 
Sbjct: 433 LFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLL 492

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA  +I + M F      W ALL AC  +GN+ + E AA +  +LEP N   +
Sbjct: 493 GRAGKLSEAERLI-DTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPY 551

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +L  +Y  A + ++  R+ +++ DRG+
Sbjct: 552 IMLASMYSAARKWEEAARIRKLMRDRGI 579



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 238/502 (47%), Gaps = 84/502 (16%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           ++F  +L++C   K +  G  LH +   +L+  +  +S+  + LY+   L+  AH  F+Q
Sbjct: 9   QSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQ 68

Query: 152 MSNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALY 182
                 F+F                              +N+LI+ YA+ G+   A++L+
Sbjct: 69  THEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLF 128

Query: 183 FQMEEEGVEPDQFTFPRVLKACAG-LGLIRVGEKVHLDAVRFGFGFDGF--VLNALVDMY 239
            +M E G+  D FTF  V+ AC   +GLIR      L ++ F  GFD +  V N+L+  Y
Sbjct: 129 GEMREMGLVMDGFTFSGVITACCNHVGLIR-----QLHSLAFSSGFDSYVSVKNSLLTYY 183

Query: 240 AKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
           +K G + +A  VF+ +G   +D +S+NSM+  Y  H   ++A  ++R M+  GF+ D   
Sbjct: 184 SKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT 243

Query: 298 ISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK-LDQACWLFDHM 353
           ++S+L   S    L  G Q H   ++ G   +  + + LI +Y+K G  + ++  +F+ +
Sbjct: 244 LASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI 303

Query: 354 PQKDVVSWNSIIHAHSKDH----EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
              D+V WN++I  +S++     EAL  F QM+R G  PD  +FV  +SAC++L S   G
Sbjct: 304 CGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG 363

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM--------------------- 448
           ++  ++ ++    S ++     +V +Y + G + +A  +                     
Sbjct: 364 KQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQ 423

Query: 449 ---------IVEKM---EFEASPVVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNE 493
                    + E+M       + +   ++L AC   G V  G+      + +F +EP+ E
Sbjct: 424 HGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAE 483

Query: 494 HNFELLIKIYGNAGRLDDVERV 515
           H +  +I + G AG+L + ER+
Sbjct: 484 H-YSCMIDLLGRAGKLSEAERL 504



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 172/348 (49%), Gaps = 21/348 (6%)

Query: 66  KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           K  L+AL ++ +D+   V  G  +   T AS+L T   ++ +  G++ H         KN
Sbjct: 220 KRGLKAL-ALYRDM---VHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKN 275

Query: 126 KGISSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYF 183
           + + S L+ +YA  G  + E+ +VF+++         WN++ISGY++  E   +A+  + 
Sbjct: 276 RHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVV--WNTMISGYSQNKELSVEALECFR 333

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKC 242
           QM+  G  PD  +F   + AC+ L     G++ H  A++     +   V NALV MY+KC
Sbjct: 334 QMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKC 393

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G++  AR +F R+   + ++ NS++ GY  HG+  E+ ++F  M+     P  + + SIL
Sbjct: 394 GNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSIL 453

Query: 303 -ANASLLRIGAQVHGWVLRR---GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKD 357
            A A   R+      + + +   G+E +    + +I +  + GKL +A  L D MP    
Sbjct: 454 SACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPG 513

Query: 358 VVSWNSIIHAHSK------DHEALIYFEQMERDGVLPDHLTFVSLLSA 399
             +W +++ A  K        +A   F Q+E    +P ++   S+ SA
Sbjct: 514 SAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVP-YIMLASMYSA 560


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 241/438 (55%), Gaps = 10/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF ++L  C +  ++     +H L+ +        + + L+  Y        A + F  M
Sbjct: 125 TFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGM 184

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + R      W ++ISG A    Y+D+I L+ QM    V+ +  T+   L ACAG   ++ 
Sbjct: 185 AERNVIT--WTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSSSLLACAGSLALKE 241

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   V+ G   D  V + L+D+Y+KCG +    +VF      D IS   +L G+  
Sbjct: 242 GQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQ 301

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL  +AF++F  M   G   D   +S++L     ++   +G Q+H  V+++    ++ +
Sbjct: 302 NGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNIYV 361

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N LI +YSK G+L+++  +F+  P K+ +SWNSII A   H +  E    FE M+ DG 
Sbjct: 362 CNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGA 421

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P  +TF+SLL  C+H+GS K G  + + M  +YGI PRVEHYAC+V++ GRAGL+++A 
Sbjct: 422 NPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLEDAR 481

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           S I E   F+ S ++W AL+ AC   GN  +G+ AA+KL  L+PD+   + LL  IY + 
Sbjct: 482 SFI-EDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSSE 540

Query: 507 GRLDDVERVERMLVDRGL 524
           GR DD  RV + + + GL
Sbjct: 541 GRWDDRARVMKSMREMGL 558



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 171/373 (45%), Gaps = 35/373 (9%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DSI+  L   ++  +   + T++S L  C    A++ G ++H L+    L  +  + S L
Sbjct: 207 DSIV--LFQQMRRTVDANSATYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGL 264

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + LY+  GL+++   VF     R         ++ G+A+ G  E A  L+ +M  EG+  
Sbjct: 265 MDLYSKCGLMEDTLSVFRLC--RQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILI 322

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D      VL A        +G+++H   ++  FG + +V N L++MY+KCG++ ++  VF
Sbjct: 323 DTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVF 382

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
           +   +K+ IS+NS++  +  HG   E F +F  M  +G +P  V   S+L   S      
Sbjct: 383 NETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCS------ 436

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
             H    ++G+E    I NS+   Y    +++    + D + +  ++          +D 
Sbjct: 437 --HVGSAKKGLE----ILNSMSSEYGILPRVEHYACVVDMLGRAGLL----------EDA 480

Query: 373 EALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            + I       DG   D  L + +L+ AC+  G+ ++G+     ++     SP    Y  
Sbjct: 481 RSFI------EDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAA--YVL 532

Query: 432 MVNLYGRAGLIDE 444
           + N+Y   G  D+
Sbjct: 533 LSNIYSSEGRWDD 545



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 171/357 (47%), Gaps = 26/357 (7%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM------ 185
           L+ +YA  G   EA +VFD+M  R + +  WNSLI         EDA++ + +M      
Sbjct: 61  LVSMYARCGRHAEAARVFDEMRIRDSVS--WNSLIGSSGA----EDALSQFRRMLRSSSS 114

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
              GV  D  TF  VL ACA    +     VH   V  GF  +  V NALV  Y +C   
Sbjct: 115 PGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESP 174

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             A   F  +  +++I++ +M++G     L  ++  +F+ M            SS+LA A
Sbjct: 175 GSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDANSATYSSSLLACA 234

Query: 306 SLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
             L +  G Q+HG V++ G+E DL + + L+ +YSK G ++    +F    Q D +S   
Sbjct: 235 GSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTV 294

Query: 364 IIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK- 419
           I+   ++   + +A   F +M  +G+L D     ++L A        +G+++ +++++K 
Sbjct: 295 ILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKC 354

Query: 420 YGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +G +     Y C  ++N+Y + G ++E+  +  E      + + W +++ A   HG 
Sbjct: 355 FGRNI----YVCNGLINMYSKCGELEESIQVFNETP--SKNSISWNSIIAAFARHGQ 405



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 18/228 (7%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI----- 287
           NALV MYA+CG   +A  VFD +  +D +S+NS+    I      +A   FR M+     
Sbjct: 59  NALVSMYARCGRHAEAARVFDEMRIRDSVSWNSL----IGSSGAEDALSQFRRMLRSSSS 114

Query: 288 -LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
              G   D    +++L   A  + L   A VHG V+ RG E ++ + N+L+  Y +    
Sbjct: 115 PGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESP 174

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSAC 400
             A   F  M +++V++W ++I   +++    ++++ F+QM R  V  +  T+ S L AC
Sbjct: 175 GSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSSSLLAC 233

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           A   ++K G+++  ++V K G+   +   + +++LY + GL+++  S+
Sbjct: 234 AGSLALKEGQQIHGLVV-KAGLETDLHVESGLMDLYSKCGLMEDTLSV 280



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 19/145 (13%)

Query: 309 RIGAQVHGWVLRRGVEWDLC-----------IANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           R+GA +H  +++    + LC             N+L+ +Y++ G+  +A  +FD M  +D
Sbjct: 26  RLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYARCGRHAEAARVFDEMRIRD 85

Query: 358 VVSWNSIIHAHSKDHEALIYFEQMERDGVLP------DHLTFVSLLSACAHLGSVKVGER 411
            VSWNS+I   S   +AL  F +M R    P      DH TF ++LSACA   S+     
Sbjct: 86  SVSWNSLI-GSSGAEDALSQFRRMLRSSSSPGGGVSCDHATFTTVLSACAREASLPTCAM 144

Query: 412 LFSVMVEKYGISPRVEHYACMVNLY 436
           +  ++V + G    V     +V  Y
Sbjct: 145 VHGLVVSR-GFEAEVSVGNALVTAY 168


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 269/487 (55%), Gaps = 17/487 (3%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           +F  +      P L  +  F  +K +  ++ +  L    Q    VQ+  FA  + +C   
Sbjct: 23  SFKKFAHIQKYPFLLCK--FFISKRRICNANLFQLSPPFQVYSIVQSLVFA--ISSC--- 75

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
            +V +   +H  +  +L   +  I  +L+ +Y   G  ++A ++FD+M N+   +  WNS
Sbjct: 76  TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVS--WNS 133

Query: 165 LISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           L+SG +  G     +  + +M  E G +P++ T   V+ ACA +G +  G+ +H   V+ 
Sbjct: 134 LMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKL 193

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G      V+N+L++MY K G +  A  +F+ +  + L+S+NSM+  + H+G   +  D+F
Sbjct: 194 GMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF 253

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             M   G +PD   + ++L    +  L R    +H ++ R G   D+ IA +L+ +Y+K 
Sbjct: 254 NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL 313

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G+L+ +  +F+ +  +D ++W +++     H+   EA+  F+ M ++GV  DH+TF  LL
Sbjct: 314 GRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLL 373

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           SAC+H G V+ G++ F +M E Y + PR++HY+CMV+L GR+G +++AY +I + M  E 
Sbjct: 374 SACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELI-KSMPMEP 432

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           S  VWGALL AC ++GNV +G+  A++L  L+P +  N+ +L  IY  AG   D  +V  
Sbjct: 433 SSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRA 492

Query: 518 MLVDRGL 524
           ++ +R L
Sbjct: 493 LMKERRL 499


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/470 (32%), Positives = 258/470 (54%), Gaps = 41/470 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ +L++ C Q +A+E G K+H  I T+       I ++LLR+YA  G + +A +VFD+M
Sbjct: 87  TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE------------------------ 188
            NR   +  WN +++GYAE+G  E+A  L+ +M E+                        
Sbjct: 147 PNRDLCS--WNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVL 204

Query: 189 --------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
                      P+ FT    + A A +  IR G+++H   VR G   D  + ++L+DMY 
Sbjct: 205 YSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYG 264

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG I +AR +FD+I  KD++S+ SM+  Y       E F +F  ++ +   P+    + 
Sbjct: 265 KCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAG 324

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L   A+ +   +G QVHG++ R G +     ++SL+ +Y+K G ++ A  + D  P+ D
Sbjct: 325 VLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPD 384

Query: 358 VVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VSW S+I   +++    EAL YF+ + + G  PDH+TFV++LSAC H G V+ G   F 
Sbjct: 385 LVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFY 444

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + EK+ +S   +HY C+V+L  R+G  ++  S+I E M  + S  +W ++L  C  +GN
Sbjct: 445 SITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISE-MPMKPSKFLWASVLGGCSTYGN 503

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + + E AAQ+LF++EP+N   +  +  IY  AG+ ++  ++ + + + G+
Sbjct: 504 IDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGV 553



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 166/390 (42%), Gaps = 62/390 (15%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           L S++Q + +S  N  TV     A+    C     +  G ++H  I    L  ++ + S 
Sbjct: 204 LYSLMQRVPNSRPNIFTVSIAVAAAAAVKC-----IRRGKEIHGHIVRAGLDSDEVLWSS 258

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +Y   G IDEA  +FD++  +   +  W S+I  Y +   + +  +L+ ++      
Sbjct: 259 LMDMYGKCGCIDEARNIFDKIVEKDVVS--WTSMIDRYFKSSRWREGFSLFSELVGSCER 316

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+++TF  VL ACA L    +G++VH    R GF    F  ++LVDMY KCG+I  A+ V
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
            D     DL+S+ S++ G   +G   EA   F  ++ +G  PD V   ++L+        
Sbjct: 377 VDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLS-------- 428

Query: 312 AQVHGWVLRRGVEWDLCIA------------NSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           A  H  ++ +G+E+   I               L+ + ++ G+ +Q   +   MP K   
Sbjct: 429 ACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMK--- 485

Query: 360 SWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
                                       P    + S+L  C+  G++ + E       E 
Sbjct: 486 ----------------------------PSKFLWASVLGGCSTYGNIDLAE---EAAQEL 514

Query: 420 YGISPRVE-HYACMVNLYGRAGLIDEAYSM 448
           + I P     Y  M N+Y  AG  +E   M
Sbjct: 515 FKIEPENPVTYVTMANIYAAAGKWEEEGKM 544



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 177/386 (45%), Gaps = 75/386 (19%)

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           +P   T+  +++ C+    +  G+KVH      GF     + N L+ MYAKCG +V AR 
Sbjct: 82  KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARK 141

Query: 251 VFDRIGNKDLISYN-------------------------------SMLTGYIHHGLLVEA 279
           VFD + N+DL S+N                               +M+TGY+      EA
Sbjct: 142 VFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEA 201

Query: 280 FDIFRGMI-LNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
             ++  M  +    P+   +S   +  A    +R G ++HG ++R G++ D  + +SL+ 
Sbjct: 202 LVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMD 261

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLT 392
           +Y K G +D+A  +FD + +KDVVSW S+I  +   S+  E    F ++      P+  T
Sbjct: 262 MYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYT 321

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           F  +L+ACA L + ++G+++   M  + G  P     + +V++Y + G I+ A  ++   
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMT-RVGFDPYSFASSSLVDMYTKCGNIESAKHVV--- 377

Query: 453 MEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE-HNFELLIKIYGNAG 507
              +  P    V W +L+  C  +G               +PD     F+LL+K   +  
Sbjct: 378 ---DGCPKPDLVSWTSLIGGCAQNG---------------QPDEALKYFDLLLK---SGT 416

Query: 508 RLDDVERVERM-------LVDRGLEF 526
           + D V  V  +       LV++GLEF
Sbjct: 417 KPDHVTFVNVLSACTHAGLVEKGLEF 442


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 235/453 (51%), Gaps = 13/453 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISS 130
           +I   L+     G+     T  SLL    Q  A+  G  +H       L +N+    I +
Sbjct: 185 AIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGT 244

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            LL +YA    +  A +VF  M  R      W++LI G+       +A  L+  M  EG+
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVRNDVT--WSALIGGFVLCDRMTEAFNLFKDMLVEGL 302

Query: 191 E-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
                 +    L+ CA L  + +G ++H    + G   D    N+L+ MYAK G I +A 
Sbjct: 303 CFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEAT 362

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--- 306
             FD I  KD ISY ++L+G + +G   EAF +F+ M     +PD   + S++   S   
Sbjct: 363 MFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLA 422

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L+ G   HG V+ RG+  +  I NSLI +Y+K GK+D +  +FD MP +DVVSWN++I 
Sbjct: 423 ALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA 482

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               H    EA   F  M+  G  PD +TF+ L++AC+H G V  G+  F  M  KYGI 
Sbjct: 483 GYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL 542

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           PR+EHY CMV+L  R GL+DEAY  I + M  +A   VWGALL AC +H N+ +G+  ++
Sbjct: 543 PRMEHYICMVDLLARGGLLDEAYQFI-QSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
            + +L P+   NF LL  I+  AGR D+   V 
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 634



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 199/381 (52%), Gaps = 18/381 (4%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           K+K    + L  + + G +  A QVFD++    A A+  N+LI  Y+ LG +  AI LY 
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAY--NALIRAYSWLGPFHAAIDLYR 89

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M    V P+++TFP VLKAC+ L  +R G  +H  A   G   D FV  AL+D+Y +C 
Sbjct: 90  SMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCA 149

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDP---VAIS 299
               AR VF ++  +D++++N+ML GY +HG+   A      M    G  P+    V++ 
Sbjct: 150 RFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLL 209

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWD---LCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
            +LA    L  G  +H + LR  +E +   + I  +L+ +Y+K  +L  AC +F  MP +
Sbjct: 210 PLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR 269

Query: 357 DVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFV-SLLSACAHLGSVKVGERL 412
           + V+W+++I       +  EA   F+ M  +G+     T V S L  CA L  + +G +L
Sbjct: 270 NDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQL 329

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            + ++ K GI   +     ++++Y +AGLI+EA +M  +++  + + + +GALL  C  +
Sbjct: 330 HA-LIAKSGIHADLTASNSLLSMYAKAGLINEA-TMFFDEIAVKDT-ISYGALLSGCVQN 386

Query: 473 GNVCMGETAAQKL--FELEPD 491
           G         +K+    +EPD
Sbjct: 387 GKAEEAFLVFKKMQACNMEPD 407


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 246/439 (56%), Gaps = 10/439 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TF   L  C +L  +  G  +         + +  + S LL LYA +G + +A +VFD
Sbjct: 108 STTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFD 167

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  R      W+++++G+   G+  DAI +Y +M E+GV+ D+     V++AC     +
Sbjct: 168 RMPRRDRVT--WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R+G  VH   +R G   D     +LVDMYAK G +  A  VF  + +++ +S+++M++G+
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +G   EA  +FR M  +G  PD  A+ S L   +N   L++G  VHG+++RR  +++ 
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNC 344

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERD 384
            +  + I +YSK G L  A  LF+ +  +D++ WN++I    AH +  +AL  F++M   
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PDH TF SLLSA +H G V+ G+  F  MV  + I+P  +HY C+V+L  R+GL++E
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A S ++  M+ E +  +W ALL  C  +  + +GE+ A  + EL+PD+     L+  +Y 
Sbjct: 465 A-SDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 505 NAGRLDDVERVERMLVDRG 523
              + D V +V +++ D G
Sbjct: 524 ATKKWDKVRQVRKLMKDSG 542



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 182/337 (54%), Gaps = 13/337 (3%)

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           F+       PD  TF   L ACA LG +R GE V   A   G+  D FV ++L+ +YA+ 
Sbjct: 97  FRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARW 156

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G +  A  VFDR+  +D +++++M+ G++  G  ++A  ++R M  +G   D V +  ++
Sbjct: 157 GAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVI 216

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
                A  +R+GA VHG +LR G+  D+  A SL+ +Y+K+G LD AC +F  M  ++ V
Sbjct: 217 QACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV 276

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SW+++I   +++    EAL  F  M+  G+ PD    VS L AC+++G +K+G  +   +
Sbjct: 277 SWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI 336

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V ++  +  +   A  +++Y + G +  A + ++  M  +   ++W A++  C  HG   
Sbjct: 337 VRRFDFNCILGTAA--IDMYSKCGSL--ASAQMLFNMISDRDLILWNAMIACCGAHGRGQ 392

Query: 477 MGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDD 511
              T  Q++ E  + PD+   F  L+    ++G +++
Sbjct: 393 DALTLFQEMNETGMRPDHA-TFASLLSALSHSGLVEE 428



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 162/336 (48%), Gaps = 26/336 (7%)

Query: 43  ITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCY 102
           +  F   P+       T    F     Q LD+I Q      ++G+         +++ C 
Sbjct: 163 VKVFDRMPRRDRVTWSTMVAGFVSAG-QPLDAI-QMYRRMREDGVKGDEVVMIGVIQACT 220

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
             + V  G  +H  +  + +R +   ++ L+ +YA  GL+D A +VF  M +R   +  W
Sbjct: 221 AARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS--W 278

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           +++ISG+A+ G+ ++A+ L+  M+  G++PD       L AC+ +G +++G  VH   VR
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
             F F+  +  A +DMY+KCG +  A+ +F+ I ++DLI +N+M+     HG   +A  +
Sbjct: 339 R-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 283 FRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN----------- 331
           F+ M   G  PD    +S+L+  S        H  ++  G  W  C+ N           
Sbjct: 398 FQEMNETGMRPDHATFASLLSALS--------HSGLVEEGKLWFGCMVNHFKITPAEKHY 449

Query: 332 -SLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII 365
             L+ + ++ G +++A  L   M  +  V+ W +++
Sbjct: 450 VCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALL 485


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 263/500 (52%), Gaps = 70/500 (14%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E +V  GI   T    ++L  C  L     G ++H     + L ++  + + L+ +YA  
Sbjct: 220 EMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKC 279

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +++A++VF++M  R      WN++++GY++ G +EDA++L+ +M EE +E D  T+  
Sbjct: 280 GKMEDANKVFERM--RFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSS 337

Query: 200 V-----------------------------------LKACAGLGLIRVGEKVHLDAVRFG 224
           V                                   L ACA +G +  G++ H  +V+F 
Sbjct: 338 VISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFI 397

Query: 225 FGF-------DGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGL 275
                     D  V+NAL+DMYAKC  +  AR +FD I   ++D++++  M+ GY  HG 
Sbjct: 398 LKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGD 457

Query: 276 LVEAFDIFRGM--ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWD-LC 328
              A  +F  M  I N   P+   IS +L   A  + L+ G Q+H +VLRR  ++ D L 
Sbjct: 458 ANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLF 517

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +AN LI +YSK G +D A  +FD M +++ VSW S++     H +  +A   F++M ++ 
Sbjct: 518 VANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEA 577

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           ++ D +TF+ +L AC+H G               +G+ P VEHYACMV+L GRAG + EA
Sbjct: 578 LVLDGITFLVVLYACSHSGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEA 624

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I   M  E +PVVW ALL AC +H N  + E AA+KL EL+ DN+  + LL  IY N
Sbjct: 625 MRLI-NDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYAN 683

Query: 506 AGRLDDVERVERMLVDRGLE 525
           A R  DV R+  ++   G++
Sbjct: 684 ARRWKDVARIGYLMKRTGIK 703



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 230/505 (45%), Gaps = 87/505 (17%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  + + C ++   E G  +H  +       N  + + ++ +Y     +  A +VFD++
Sbjct: 128 TFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL 187

Query: 153 SNR-TAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLI 210
             R    +  WNS++S Y+       A++L+ +M    G+ PD      +L  C  LGL 
Sbjct: 188 CYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLG 247

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G +VH   VR G   D FV NALVDMYAKCG +  A  VF+R+  KD++++N+M+TGY
Sbjct: 248 LCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGY 307

Query: 271 IHHGLL-----------------------------------VEAFDIFRGMILNGFDPDP 295
             +G                                      EA D+FR M      P+ 
Sbjct: 308 SQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNV 367

Query: 296 VAISSILANASLLRIGAQVHG---------WVLR---RGVEWDLCIANSLIVVYSKDGKL 343
           V + S+L+  +   +GA +HG         ++L+        DL + N+LI +Y+K   L
Sbjct: 368 VTLMSLLSACA--SVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSL 425

Query: 344 DQACWLFDHMPQK--DVVSWNSIIHA---HSKDHEALIYFEQMER--DGVLPDHLTFVSL 396
           + A  +FD +  K  DVV+W  +I     H   + AL  F +M +  + ++P+  T   +
Sbjct: 426 EVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCV 485

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEAYSMIVEKMEF 455
           L ACA L ++K G+++ + ++ +  I   V   A C++++Y ++G +D A  ++ + M  
Sbjct: 486 LMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA-QVVFDSMS- 543

Query: 456 EASPVVWGALLYACYLHGN-------------------------VCMGETAAQKLFELEP 490
           + + V W +LL    +HG                          V    + +   F ++P
Sbjct: 544 KRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMDFGVDP 603

Query: 491 DNEHNFELLIKIYGNAGRLDDVERV 515
             EH +  ++ + G AGRL +  R+
Sbjct: 604 GVEH-YACMVDLLGRAGRLGEAMRL 627



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 14/315 (4%)

Query: 103 QLKAVEHGIKLHR--LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ-MSNRTAFA 159
           Q K +     LH+  +I  +LL     +++ L+  Y +   I  A  + ++ ++   +  
Sbjct: 33  QCKTLTQAKLLHQQYIINGHLLNSYTNVTN-LIYTYISSNSITNAILLLEKNVTPSHSSV 91

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           + WN LI           A+ L+ +M+     PD +TFP V KAC  +    +G  +H  
Sbjct: 92  YWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGC 151

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLL 276
            +R GF  + FV NA++ MY KC  +V AR VFD +   G  D +++NS+++ Y H  + 
Sbjct: 152 VIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVP 211

Query: 277 VEAFDIFRGMILN-GFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANS 332
             A  +FR M +  G  PD V + +IL     L +   G QVHG+ +R G+  D+ + N+
Sbjct: 212 NVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNA 271

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD 389
           L+ +Y+K GK++ A  +F+ M  KDVV+WN+++  +S++    +AL  F +M  + +  D
Sbjct: 272 LVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESD 331

Query: 390 HLTFVSLLSACAHLG 404
            +T+ S++S  A  G
Sbjct: 332 VVTWSSVISGYAQRG 346



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 13/214 (6%)

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N ++   +H      A  +FR M    + PD      +       S   +GA +HG V+
Sbjct: 94  WNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVI 153

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK---DVVSWNSIIHAHSK---DHE 373
           R G E ++ + N++I +Y K   +  A  +FD +  +   D V+WNSI+  +S     + 
Sbjct: 154 RLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNV 213

Query: 374 ALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           A+  F +M    G+LPD +  V++L  C +LG    G ++    V + G+   V     +
Sbjct: 214 AVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCV-RSGLVEDVFVGNAL 272

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           V++Y + G +++A + + E+M F+   V W A++
Sbjct: 273 VDMYAKCGKMEDA-NKVFERMRFK-DVVTWNAMV 304


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 255/442 (57%), Gaps = 14/442 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  LL+ C  L  ++ G  +H  +  +  R +  I + +L +YA  G ++ A QVFD+M 
Sbjct: 94  YNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMC 153

Query: 154 NRTAFAFPWNSLISGYAELG---EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            +      W S+I+GY++ G       A+ L+ +M  +G+ P++F    ++K C  LG  
Sbjct: 154 VKDVVT--WTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSC 211

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G+++H    ++GF  + FV ++LVDMYA+CG++ ++R VFD + +K+ +S+N++++G+
Sbjct: 212 VDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGF 271

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDL 327
              G   EA  +F  M   GF       S++L ++S    L  G  +H  +++ G +   
Sbjct: 272 ARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVG 331

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMER- 383
            + N+L+ +Y+K G +  A  +FD + + DVVS NS++     H    EA+  FE+M   
Sbjct: 332 YVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLW 391

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
             + P+ +TF+S+L+AC+H G +  G   F +M +KYG+ P++ HY  +V+L+GRAGL+D
Sbjct: 392 VEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLD 450

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           +A S I E+M  E +  +WGALL A  +H N  MG  AAQK+ EL+P       LL  IY
Sbjct: 451 QAKSFI-EEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIY 509

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
            +AG+  DV +V + + D GL+
Sbjct: 510 ASAGQWKDVAKVRKEMKDSGLK 531



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 174/328 (53%), Gaps = 11/328 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+       +SL++ C  L +   G ++H        ++N  + S L+ +YA  G +
Sbjct: 187 VRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGEL 246

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            E+  VFD++ ++   +  WN+LISG+A  GE E+A+ L+ +M+ EG    +FT+  +L 
Sbjct: 247 RESRLVFDELESKNEVS--WNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLC 304

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           + +  G +  G+ +H   ++ G    G+V N L+ MYAK G+I  A+ VFDR+   D++S
Sbjct: 305 SSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVS 364

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMIL-NGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
            NSML GY  HGL  EA ++F  M+L    +P+ +   S+L   ++A LL  G      +
Sbjct: 365 CNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM 424

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHS--KDHEAL 375
            + G+E  L    +++ ++ + G LDQA    + MP + +   W +++ A    K+ E  
Sbjct: 425 KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMG 484

Query: 376 IYFEQ--MERDGVLPDHLTFVSLLSACA 401
            Y  Q  +E D   P   T +S + A A
Sbjct: 485 AYAAQKVLELDPFYPGAHTLLSNIYASA 512


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 257/476 (53%), Gaps = 48/476 (10%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           + F  +L+ C  +  ++   K+H  I    L ++  + +K++ +       + A+ +F +
Sbjct: 15  DIFVPILKNCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKR 71

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-----EEEGVEPDQFTFPRVLKACAG 206
           +++  AF +  N++I  Y     Y  AI +Y QM      E  + PD+FTFP V+K+CAG
Sbjct: 72  VADPNAFLY--NAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAG 129

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------------------------ 242
           L    +G++VH    +FG   +  V N+LV+MY KC                        
Sbjct: 130 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTL 189

Query: 243 -------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
                  G + +AR +F+ + +K + S+ ++++GY   G   +A + FR M + G +PD 
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           +++ S+L   A    L +G  +H +  + G   ++C+ N+LI +Y+K G +D+   LFD 
Sbjct: 250 ISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQ 309

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M ++DV+SW+++I     H + HEA+  F++M++  + P+ +TFV LLSACAH G +  G
Sbjct: 310 MNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG 369

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            R F  M   Y I P VEHY C+VNL G +G +D+A  +I +KM  +    +WG+LL +C
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELI-KKMPMKPDSAIWGSLLSSC 428

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             H N+ +   A + L ELEP +  N+ LL  +Y + G+ D V R+ +++  + ++
Sbjct: 429 RSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMK 484



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 2/128 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     +  S+L  C QL A+E G  +H         +N  + + L+ +YA  G IDE 
Sbjct: 244 GIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEG 303

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FDQM+ R   +  W+++I G A  G   +AI L+ +M++  +EP+  TF  +L ACA
Sbjct: 304 RRLFDQMNERDVIS--WSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACA 361

Query: 206 GLGLIRVG 213
             GL+  G
Sbjct: 362 HAGLLNEG 369


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 246/446 (55%), Gaps = 18/446 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF   ++ C  +  ++   K+H L+    L  +  I S L+  Y  FGL++ A
Sbjct: 134 GVIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHA 190

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              F+++  R      WN++++GYA++G++E  +  + +M +E V P +FT   VL   A
Sbjct: 191 QVAFEELPIRDVVL--WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFA 248

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G +  G  +H  A++ G+     V N+L+DMY KC  I  A  +F+ +  KD+ S+NS
Sbjct: 249 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           +++ +   G       +   M+  G  PD V ++++L   S L     G ++HG+++  G
Sbjct: 309 IVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSG 368

Query: 323 VEW------DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           +        D+ + N++I +Y+K G +  A  +F+ M  KDV SWN +I     H   +E
Sbjct: 369 LGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNE 428

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F +M    + PD +TFV +LSAC+H G V  G      M  KY ++P +EHY C++
Sbjct: 429 ALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVI 488

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++ GRAG +DEAY + +  M  EA+PVVW ALL AC LH +  + E AAQ++FELEP++ 
Sbjct: 489 DMLGRAGQLDEAYELAL-TMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHC 547

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
            ++ L+  +YG  GR ++V  V   +
Sbjct: 548 GSYVLMSNVYGAVGRYEEVLEVRHTM 573



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 221/469 (47%), Gaps = 55/469 (11%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T   ASL  + +  K +  G ++H  +  N    +    + L+ +Y+    ++ A  +F 
Sbjct: 38  TTCIASLQASAHH-KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFS 96

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
             ++     F +N++ISG+   G  E+    Y +M  EGV PD+FTFP  +KAC  L ++
Sbjct: 97  DPTHEIN-VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVL 153

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            + +K+H    +FG   D F+ +ALV+ Y K G +  A+  F+ +  +D++ +N+M+ GY
Sbjct: 154 EI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDL 327
              G      + FR M      P    ++ +L+  ++   L  G  +HG+ ++ G +  +
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DHEA-LIYFEQMERD 384
            ++NSLI +Y K   ++ A  +F+ M +KD+ SWNSI+  H +  DH+  L   ++M   
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV------------------------EKY 420
           G+ PD +T  ++L AC+HL ++  G  +   M+                         K 
Sbjct: 333 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 392

Query: 421 GISPRVEH-------------YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGAL 465
           G S R  H             +  M+  YG  G  +EA  M     E +  P  V +  +
Sbjct: 393 G-SMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGV 451

Query: 466 LYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
           L AC   G V  G     ++   +++ P  EH +  +I + G AG+LD+
Sbjct: 452 LSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH-YTCVIDMLGRAGQLDE 499



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 8/147 (5%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSK 131
           D  ++ L+  +  GI     T  ++L  C  L A+ HG ++H  +I + L +  K I   
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 132 LLR-----LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
           LL+     +YA  G + +AH VF++MSN+   +  WN +I GY   G   +A+ ++ +M 
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVAS--WNIMIMGYGMHGYGNEALEMFSRMC 437

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVG 213
           E  ++PD+ TF  VL AC+  G +  G
Sbjct: 438 EVQLKPDEVTFVGVLSACSHAGFVSQG 464


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 257/476 (53%), Gaps = 48/476 (10%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           + F  +L+ C  +  ++   K+H  I    L ++  + +K++ +   +G  + A+ +F  
Sbjct: 15  DMFVPILKDCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKG 71

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-----EEEGVEPDQFTFPRVLKACAG 206
           +++  AF +  N++I  Y     Y  AI +Y QM      E  + PD+FTFP V+K+CAG
Sbjct: 72  VADPNAFLY--NAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAG 129

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------------------------ 242
           L    +G++VH    +FG   +  V N+LV+MY KC                        
Sbjct: 130 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTL 189

Query: 243 -------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
                  G + +AR +F+ + +K + S+ ++++GY   G   +A + FR M + G +PD 
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           +++ S+L   A    L +G  +H +  + G   ++C+ N+LI +Y+K G +DQ   LFD 
Sbjct: 250 ISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M ++DV+SW+++I     H +  EA+  F++M++  + P  +TFV LL+ACAH G +  G
Sbjct: 310 MKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG 369

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            R F  M   Y I P VEHY C+VNL G +G +D+A  + V+KM  +    +WG+LL +C
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALEL-VKKMPRKPDSPIWGSLLSSC 428

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             HGN+ +   A + L ELEP +  N+ LL  +Y + G+ D V R+ +++  + ++
Sbjct: 429 RSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMK 484



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 6/194 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     +  S+L  C QL A+E G  +H         +N  + + L+ +YA  G ID+ 
Sbjct: 244 GIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQG 303

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FDQM  R   +  W+++I G A  G   +AI L+ +M++  +EP   TF  +L ACA
Sbjct: 304 RRLFDQMKERDVIS--WSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA 361

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DLIS 262
             GL+  G + + ++++  +  +  V     LV++    G + +A  +  ++  K D   
Sbjct: 362 HAGLLNEGLR-YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPI 420

Query: 263 YNSMLTGYIHHGLL 276
           + S+L+    HG L
Sbjct: 421 WGSLLSSCRSHGNL 434


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 256/472 (54%), Gaps = 17/472 (3%)

Query: 63  AFPKT-KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL 121
           A+ K  +L+    +  D+++S   GI   +  + SLL++C     +E G ++H  +    
Sbjct: 162 AYAKNGELEKAIRLFSDMQAS---GIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQ 218

Query: 122 LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
           L  N  + + +  +Y   G ++ A  VFD M  + A    W  L+ GY +  + E A+ L
Sbjct: 219 LNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVT--WTGLMVGYTQAKKLEVALEL 276

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           + +M  EGVE D+F F  VLK C  L    +G+++H   V+ G   +  V   LVD Y K
Sbjct: 277 FARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVK 336

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF-----RGMILNGFDPDPV 296
           CGDI  A   F RI   + +S++++++G+   G L +   IF      G++LN F    V
Sbjct: 337 CGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSV 396

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
              +  A A+ L +G+Q HG  ++RG+   L   ++++ +YSK G+LD A   F+ + + 
Sbjct: 397 -FQACAAQAN-LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEP 454

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           D V+W +II     H    EAL +F +M+  GV P+ +TF+++L+AC+H G V   ++  
Sbjct: 455 DAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYL 514

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M   YG+ P ++HY CM++ Y RAGL+ EA  +I  +M FE   + W +LL  C+ H 
Sbjct: 515 GSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELI-NRMPFEPDAMSWKSLLGGCWAHC 573

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ++ +G+ AA+ LF L+P +   + LL  +Y   G+ ++   V +++ +R L+
Sbjct: 574 DLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELK 625



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 193/395 (48%), Gaps = 11/395 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           ++V   ++  L E C +L+++  G  +H  +   +   +  I + LLR+Y   G   +  
Sbjct: 83  VSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQ 142

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VFD+M  +   +  W  +IS YA+ GE E AI L+  M+  G+ P+   +  +L++C G
Sbjct: 143 KVFDEMLMKNLVS--WVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLG 200

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
              + +G+++H   +R     +  V  A+ +MY +CG +  A+ VFD +  ++ +++  +
Sbjct: 201 PSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGL 260

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGV 323
           + GY     L  A ++F  M + G + D    S +L     L    +G Q+H  +++ G 
Sbjct: 261 MVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGX 320

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQ 380
           E ++ +   L+  Y K G ++ A   F  + + + VSW+++I   S+     + +  F  
Sbjct: 321 ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTS 380

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           +  +GV+ +   + S+  ACA   ++ +G +     + K G+   +   + MV +Y + G
Sbjct: 381 LRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAI-KRGLVSYLYGESAMVTMYSKCG 439

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            +D A     E ++ E   V W A++     HGN 
Sbjct: 440 RLDYARRAF-ESID-EPDAVAWTAIISGYAYHGNA 472


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 242/439 (55%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+TC +L  +E G ++H  I     + N  + S L+ +YA  G +D A  +  + 
Sbjct: 475 TYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 534

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +   +  W ++I+GY +    + A+  + QM + G+  D+      + ACAGL  ++ 
Sbjct: 535 AGKDVVS--WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 592

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  A   GF  D    NALV +Y+KCG+I +A   F++    D I++N++++G+  
Sbjct: 593 GQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQ 652

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G   EA  +F  M   G D +     S +  AS    ++ G QVH  + + G + +  +
Sbjct: 653 SGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 712

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
            N++I +Y+K G +  A   F  +  K+ VSWN++I+A+SK     EAL  F+QM    V
Sbjct: 713 CNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNV 772

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+H+T V +LSAC+H+G V  G   F  M  +YG++P+ EHY C+V++  RAGL+  A 
Sbjct: 773 RPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAK 832

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I+E M  E   +VW  LL AC +H N+ +GE AA  L ELEP++   + LL  +Y   
Sbjct: 833 DFILE-MPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVC 891

Query: 507 GRLDDVERVERMLVDRGLE 525
            + D  +   + + ++G++
Sbjct: 892 RKWDARDLTRQKMKEKGVK 910



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 195/396 (49%), Gaps = 13/396 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+   + T ASL+  C     +  G +LH          N  I   LL LYA    I+ 
Sbjct: 366 DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIET 425

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A   F  +         WN ++  Y  L +  ++  ++ QM+ E + P+Q+T+P +LK C
Sbjct: 426 ALNYF--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 483

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG + +GE++H   ++  F  + +V + L+DMYAK G +  A  +  R   KD++S+ 
Sbjct: 484 IRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 543

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRR 321
           +M+ GY  +    +A   FR M+  G   D V ++   S  A    L+ G Q+H      
Sbjct: 544 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 603

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
           G   DL   N+L+ +YSK G +++A   F+     D ++WN+++    +   + EAL  F
Sbjct: 604 GFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 663

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M R+G+  ++ TF S + A +   ++K G+++ +V + K G     E    ++++Y +
Sbjct: 664 ARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAV-ITKTGYDSETEVCNAIISMYAK 722

Query: 439 AGLIDEAYSMIVE-KMEFEASPVVWGALLYACYLHG 473
            G I +A    +E  M+ E S   W A++ A   HG
Sbjct: 723 CGSISDAKKQFLELSMKNEVS---WNAMINAYSKHG 755



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 208/396 (52%), Gaps = 14/396 (3%)

Query: 82  SVQN-GITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           SV+N GI    +T   LLE C +   +++ G KLH  I       N  +S KLL  Y   
Sbjct: 57  SVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFK 116

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +D A +VFD+M  RT F   WN +I   A          L+ +M  E V P++ TF  
Sbjct: 117 GDLDGALKVFDEMPERTIFT--WNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSG 174

Query: 200 VLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           VL+AC G  +   V E++H   +  G G    V N L+D+Y++ G + +AR VFD +  K
Sbjct: 175 VLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLK 234

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           D  S+ +M++G   +   VEA  +F  M + G  P P A SS+L+       L IG Q+H
Sbjct: 235 DHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 294

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DH 372
           G VL+ G   D  + N+L+ +Y   G L  A  +F +M Q+D V++N++I+  S+     
Sbjct: 295 GLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 354

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +A+  F++M+ DG+ PD  T  SL+ AC+  G++  G++L +    K G +   +    +
Sbjct: 355 KAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTT-KLGFASNDKIEGAL 413

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           +NLY +   I+ A +  +E  E E + V+W  +L A
Sbjct: 414 LNLYAKCSDIETALNYFLE-TEVE-NVVLWNVMLVA 447



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 204/404 (50%), Gaps = 23/404 (5%)

Query: 83  VQNGITVQTETFASLLETC----YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           V   +T    TF+ +LE C         VE   ++H  I    L K+  + + L+ LY+ 
Sbjct: 161 VNENVTPNEGTFSGVLEACRGGSVAFDVVE---QIHARIIYQGLGKSTIVCNPLIDLYSR 217

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D A +VFD +  +   +  W ++ISG ++     +AI L+  M   G+ P  + F 
Sbjct: 218 NGFVDRARRVFDGLYLKDHSS--WVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFS 275

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL AC  +  + +GE++H   ++ GF  D +V NALV +Y   G ++ A  +F  +  +
Sbjct: 276 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQR 335

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVH 315
           D ++YN+++ G    G   +A ++F+ M L+G +PD   ++S++   S    L  G Q+H
Sbjct: 336 DAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLH 395

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDH 372
            +  + G   +  I  +L+ +Y+K   ++ A   F     ++VV WN ++ A+       
Sbjct: 396 AYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLR 455

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC- 431
            +   F QM+ + ++P+  T+ S+L  C  LG +++GE++ S +++    S ++  Y C 
Sbjct: 456 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TSFQLNAYVCS 512

Query: 432 -MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            ++++Y + G +D A+ +++    F    VV    + A Y   N
Sbjct: 513 VLIDMYAKLGKLDTAWDILI---RFAGKDVVSWTTMIAGYTQYN 553



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 162/338 (47%), Gaps = 29/338 (8%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  +      +  GI        + +  C  L+A++ G ++H     +    +    + L
Sbjct: 556 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNAL 615

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + LY+  G I+EA+  F+Q       A  WN+L+SG+ + G  E+A+ ++ +M  EG++ 
Sbjct: 616 VTLYSKCGNIEEAYLAFEQTEAGDNIA--WNALVSGFQQSGNNEEALRVFARMNREGIDS 673

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           + FTF   +KA +    ++ G++VH    + G+  +  V NA++ MYAKCG I  A+  F
Sbjct: 674 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF 733

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
             +  K+ +S+N+M+  Y  HG   EA D F  MI +   P+ V +  +L+  S      
Sbjct: 734 LELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS------ 787

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
             H  ++ +G+E+      S+   Y    K +    + D + +  ++S        +KD 
Sbjct: 788 --HIGLVDKGIEY----FESMNTEYGLAPKPEHYVCVVDMLTRAGLLS-------RAKD- 833

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
               +  +M    + PD L + +LLSAC    ++++GE
Sbjct: 834 ----FILEMP---IEPDALVWRTLLSACVVHKNMEIGE 864


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 164/492 (33%), Positives = 260/492 (52%), Gaps = 33/492 (6%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFAS-----LLET-CYQLK 105
           ++P PL T +K    T   A ++        + NG + +T   +      LL T C    
Sbjct: 10  TNPWPLQTIRKRMSSTATTATEAPYHH-HHLIPNGHSTETSKLSHKAILHLLNTQC--TT 66

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-----IDEAHQVFDQMSNRTAFAF 160
           ++ H  + H LI      ++  I+  L++ YA          + + +VFD +  R    F
Sbjct: 67  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV--RKPNVF 124

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            WN +I    E  E   AI LY++M      P+++T+P VLKAC+  G++  G +VH   
Sbjct: 125 LWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHL 184

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEA 279
           V+ G G DG +L++ + MYA  G +V+AR + D  G + D +            G  +EA
Sbjct: 185 VKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPD------RKGCFMEA 238

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            +IF  M      P    + S+L   AN   L  G  +H +  R  ++ D  +  SL+ +
Sbjct: 239 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 298

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y+K G++D A  +F+ M  K+V SWN++I     H +  +A+  F +M+   + P+ +TF
Sbjct: 299 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITF 355

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           V +L+ACAH G V+ G  +F+ M ++YG+ P++EHY C+V+L GRAGL+ EA   +V  +
Sbjct: 356 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA-EKVVSSI 414

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
             E +P VWGALL AC  HGNV +GE   + L ELEP N   + LL  IY  AGR ++V 
Sbjct: 415 PTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVG 474

Query: 514 RVERMLVDRGLE 525
            V +++ +RG++
Sbjct: 475 EVRKLMKERGIK 486


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 164/512 (32%), Positives = 266/512 (51%), Gaps = 45/512 (8%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR 115
           PL  N       K +  + +I   +  V  GI     T+ S+L+ C +   V  G  +H 
Sbjct: 109 PLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHG 168

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
            I  +  + +  + + L+ +Y  F  +  A ++FD+M  R A +  WN++I+ YA  G +
Sbjct: 169 SIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVS--WNAVINCYASEGMW 226

Query: 176 EDAIALYFQMEEEGVEPDQFT--------------------------FPRVL-------- 201
            +A  L+ +M   GVE    T                          FP  L        
Sbjct: 227 SEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIG 286

Query: 202 -KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
            KAC+ +G IR+G+++H  A+   +     V N L+ MY+KC D+  A  VF +     L
Sbjct: 287 LKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSL 346

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
            ++NS+++GY       EA  + R M++ GF P+ + ++SIL   A  + L+ G + H +
Sbjct: 347 CTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCY 406

Query: 318 VLRRGVEWDLCIA-NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE--- 373
           +LRR    D  +  NSL+ VY+K GK+  A  + D M ++D V++ S+I  +    E   
Sbjct: 407 ILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGV 466

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F++M R G+ PDH+T V++LSAC+H   V  GERLF  M  +YGI P ++H++CMV
Sbjct: 467 ALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMV 526

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +LYGRAG + +A   I+  M ++ S   W  LL AC++HGN  +G+ AA+KL E++P+N 
Sbjct: 527 DLYGRAGFLAKAKD-IIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENP 585

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + L+  +Y  AG    +  V  ++ D G++
Sbjct: 586 GYYVLIANMYAAAGSWSKLAEVRTIMRDLGVK 617



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 12/215 (5%)

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L AC  +     G +VH   +  G  +   ++  LV  Y+      +A+++   I N D
Sbjct: 49  LLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSI---IENSD 105

Query: 260 LI---SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQ 313
           ++    +N ++  Y  + L  E    ++ M+  G  PD     S+L A    L +  G  
Sbjct: 106 ILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRV 165

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-- 371
           VHG +     +  L + N+LI +Y +   +  A  LFD M ++D VSWN++I+ ++ +  
Sbjct: 166 VHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGM 225

Query: 372 -HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
             EA   F++M   GV    +T+  +   C   G+
Sbjct: 226 WSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGN 260


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 250/446 (56%), Gaps = 8/446 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G    + T  + + +C +L  ++ G ++H+ +  +  R +  +S+ L+ +Y   G ++ A
Sbjct: 202 GFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMA 261

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+QM N+T  A  WNS+I+GY   G+    I L+ +M  EGV+P   T    L AC+
Sbjct: 262 IEVFEQMPNKTVVA--WNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACS 319

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G+ VH   +R     D F+ ++L+D+Y KCG +  A T+F  +     +S+N 
Sbjct: 320 QSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNV 379

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M++GY+  G L +A  +F  M  +  +PD +  +S+LA  S    L  G ++H  ++ R 
Sbjct: 380 MISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERN 439

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +  +  +  +L+ +Y+K G +++A  +F  +P++D+VSW S+I A   H + +EAL  F 
Sbjct: 440 LGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFA 499

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M +  V PD +TF+++LSAC+H G V  G   F+ M+  YGI PR+EHY+C++ L GRA
Sbjct: 500 EMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRA 559

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EAY ++    E      +   L  AC LH N+ +G   A+ L + +PD+   + +L
Sbjct: 560 GRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIIL 619

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y + G+ D+V  V   + D GL+
Sbjct: 620 SNMYASFGKWDEVRMVRSKMKDLGLK 645



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 229/431 (53%), Gaps = 22/431 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+ C  L+ V  G  +H  +    L  +  + S L+ +YA     + A ++FD+M
Sbjct: 108 TYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEM 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++      WN++IS Y + G++E+A+  +  M   G EPD  T    + +CA L  +  
Sbjct: 168 PDKDVAC--WNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDR 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H + V  GF  D FV  ALVDMY KCG +  A  VF+++ NK ++++NSM+ GY  
Sbjct: 226 GREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGF 285

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G  +    +F+ M   G  P    ++S     + ++ L  G  VHG+++R  ++ D+ +
Sbjct: 286 KGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFL 345

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
            +SL+ +Y K GK++ A  +F  MP+   VSWN +I  +    K  +AL  F +M +  V
Sbjct: 346 NSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFV 405

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF S+L+AC+ L +++ G  + +++VE+   +  V   A ++++Y + G ++EA+
Sbjct: 406 EPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGA-LLDMYAKCGAVEEAF 464

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNFELLI 500
              V K   E   V W +++ A   HG V      A +LF       ++PD    F  ++
Sbjct: 465 G--VFKCLPERDLVSWTSMITAYGSHGRV----YEALELFAEMLQSNVKPD-RVTFLAIL 517

Query: 501 KIYGNAGRLDD 511
               +AG +DD
Sbjct: 518 SACSHAGLVDD 528



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 224/440 (50%), Gaps = 20/440 (4%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL      K+++ G  LH+ + T  L+ +  +   L+ LY +  L D A  VFD + N  
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
             +   N L++GY     Y++A+ L+ + M    ++PD +T+P VLKAC GL  + +G+ 
Sbjct: 69  EISL-CNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQM 127

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   V+ G   D  V ++LV MYAKC +   A  +FD + +KD+  +N++++ Y   G 
Sbjct: 128 IHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGK 187

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVLRRGVEWDLCIANS 332
             EA   F  M   GF+PD V I++ +++ A LL +  G ++H  ++  G   D  ++ +
Sbjct: 188 FEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAA 247

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERDGVLPD 389
           L+ +Y K G+L+ A  +F+ MP K VV+WNS+I+ +    + +     F++M  +GV P 
Sbjct: 248 LVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPT 307

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
             T  S L AC+    +  G+ +   ++    I P +   + +++LY + G ++ A ++ 
Sbjct: 308 LTTLTSTLMACSQSAQLLEGKFVHGYIIRNR-IQPDIFLNSSLMDLYFKCGKVESAETIF 366

Query: 450 VEKMEFEASPVVWGALLYACYLHGNV-----CMGETAAQKLFELEPDNEHNFELLIKIYG 504
             K+  + + V W  ++      G +       GE +  K F +EPD    F  ++    
Sbjct: 367 --KLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMS--KSF-VEPD-AITFTSVLAACS 420

Query: 505 NAGRLDDVERVERMLVDRGL 524
               L+    +  ++V+R L
Sbjct: 421 QLAALEKGREIHNLIVERNL 440


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 245/483 (50%), Gaps = 62/483 (12%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRLYATFGL 141
           GI     TF  L + C ++K V HG   H      +L+   G    I + L+R+Y  FG 
Sbjct: 152 GILGDNLTFIYLFKACSRVKDVLHGQVFH----VQVLKLGFGSYLFIENSLIRMYGYFGE 207

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +  A +VFD+M +R   +  WNSLI GY++   +++ + L+  M E  V  D  T  +V+
Sbjct: 208 LGYAQKVFDKMDDRDLVS--WNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVI 265

Query: 202 KACAGL-------GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            AC+ L        +++  E  H+D        D ++ N+L+DMY + G +  AR VFDR
Sbjct: 266 LACSYLCEDGVVDSMVKYIEDKHVD-------IDVYLGNSLIDMYGRRGLVDLARRVFDR 318

Query: 255 IGNKDLISYNSMLTGYIHHGLLV-------------------------------EAFDIF 283
           +  K+++S+N+MLTGY   G LV                               +A  +F
Sbjct: 319 MQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLF 378

Query: 284 RGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
           + M+     PD + +SS+L+  S   LL  G  VH ++ R  ++ D+ + N+LI +Y K 
Sbjct: 379 QEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKC 438

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLL 397
           G +D+A  +F  M +KD VSW S+I   + +         F QM RDG+ P H +F+ +L
Sbjct: 439 GVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGIL 498

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            AC H G V  G   F  M   YG+ P ++HY C+V+L  R+G +D AY  I ++M    
Sbjct: 499 LACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFI-KQMPVVP 557

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
             V+W  LL AC LH N+ + E A  KL EL+P N  N+ LL   Y  + R DD  R+  
Sbjct: 558 DVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRD 617

Query: 518 MLV 520
           ++V
Sbjct: 618 LMV 620



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 230/479 (48%), Gaps = 62/479 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLR----KNKGISSKLLRLYA-TFGLIDEAHQ 147
           T +S    C Q+      IK  +    +L+R    KN    S +++ YA +   +++A+ 
Sbjct: 52  TSSSTTRKCQQIIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANF 111

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ-MEEEGVEPDQFTFPRVLKACAG 206
            F Q+   T   F  N LI G ++     +AI +Y   M  +G+  D  TF  + KAC+ 
Sbjct: 112 AFIQIGQPTLLIF--NYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSR 169

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           +  +  G+  H+  ++ GFG   F+ N+L+ MY   G++  A+ VFD++ ++DL+S+NS+
Sbjct: 170 VKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSL 229

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASLLRIGA--QVHGWVLRRGV 323
           + GY       E  D+F  M       D V  +  ILA + L   G    +  ++  + V
Sbjct: 230 ICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHV 289

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS-------------- 369
           + D+ + NSLI +Y + G +D A  +FD M +K++VSWN+++  ++              
Sbjct: 290 DIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNE 349

Query: 370 --------------------KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
                               +  +AL  F++M    V PD +T  S+LSAC+HLG +  G
Sbjct: 350 MPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTG 409

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           + +   M  ++ I   V     ++++Y + G++D+A   +   M+ + S V W +++   
Sbjct: 410 QTVHEYMC-RHDIKSDVYVGNALIDMYCKCGVVDKALE-VFHDMKKKDS-VSWTSMILGL 466

Query: 470 YLHGNV-CMGETAAQKLFE-LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
            ++G V  + E  +Q L + L+P +     +L+    +AG           LVD+GLE+
Sbjct: 467 AVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLAC-THAG-----------LVDKGLEY 513


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 171/556 (30%), Positives = 279/556 (50%), Gaps = 54/556 (9%)

Query: 22  SKNKRSRKQRRQKQQQISRNRI---TTFSSYPKSSPTPLLTNQ-KAFPKTKLQALDSIIQ 77
           +K  R    RR   Q   RN     T  SSY K +  P +     A P   + + +S+I 
Sbjct: 55  AKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLIS 114

Query: 78  D------LESSVQ-------NG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLR 123
                  L  SV+       NG   +     +++L    +   V  G+++H  +     +
Sbjct: 115 AYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQ 174

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF----------------------- 160
               + S L+ +Y+  GL+  A Q FD+M  +    +                       
Sbjct: 175 SYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDM 234

Query: 161 ------PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
                  W ++I+G+ + G   +AI L+ +M  E +E DQ+TF  VL AC G+  ++ G+
Sbjct: 235 QEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGK 294

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH   +R  +  + FV +ALVDMY KC  I  A TVF ++  K+++S+ +ML GY  +G
Sbjct: 295 QVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNG 354

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
              EA  IF  M  NG +PD   + S++   AN + L  GAQ H   L  G+   + ++N
Sbjct: 355 YSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSN 414

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLP 388
           +L+ +Y K G ++ +  LF  M   D VSW +++  ++   K +E L  FE M   G  P
Sbjct: 415 ALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP 474

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TF+ +LSAC+  G V+ G ++F  M++++ I P  +HY CM++L+ RAG ++EA   
Sbjct: 475 DKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKF 534

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I  KM F    + W +LL +C  H N+ +G+ AA+ L +LEP N  ++ LL  IY   G+
Sbjct: 535 I-NKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGK 593

Query: 509 LDDVERVERMLVDRGL 524
            ++V  + + + D+GL
Sbjct: 594 WEEVANLRKGMRDKGL 609



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 195/441 (44%), Gaps = 78/441 (17%)

Query: 94  FASLLETCYQLKAVE-HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  LL+ C   K +  H IK  R  P   L  N      L+  YA F  I  A +VFDQM
Sbjct: 18  YCELLKHCRDTKKIHCHIIKAFR-NPEIFLLNN------LVSAYAKFDRITYARRVFDQM 70

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
             R  +++                              WNSLIS YA  G    ++  Y 
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYN 130

Query: 184 QMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            M   G    ++     +L   +  G + +G +VH   V+FGF    FV + LVDMY+K 
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190

Query: 243 GDIVKARTVFDRIGNKDLISYNS-------------------------------MLTGYI 271
           G +  AR  FD +  K+++ YN+                               M+ G+ 
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC 328
            +GL  EA D+FR M L   + D     S+L        L+ G QVH +++R   + ++ 
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIF 310

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + ++L+ +Y K   +  A  +F  M  K+VVSW +++  + ++    EA+  F  M+ +G
Sbjct: 311 VGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG 370

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD  T  S++S+CA+L S++ G + F       G+   +     +V LYG+ G I+++
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDS 429

Query: 446 YSMIVEKMEFEASPVVWGALL 466
           + +  E M +    V W AL+
Sbjct: 430 HRLFSE-MSY-VDEVSWTALV 448


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/490 (31%), Positives = 263/490 (53%), Gaps = 38/490 (7%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           L +L   IQ L S    G       F S+L++C  +K +  G  +H  I    +  +   
Sbjct: 88  LHSLSFFIQMLAS----GKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYT 143

Query: 129 SSKLLRLYATFGLIDEAH---QVFDQMSNRTAFA------------------------FP 161
            + L+ +Y+ F  ++E +   +VFD+      ++                          
Sbjct: 144 CNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVS 203

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN++ISG A+ G +EDA+ +  +M    + PD FT   VL   A    +  G+++H  A+
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 263

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           R G+  D F+ ++L+DMYAKC  +  +  VF  +   D IS+NS++ G + +G+  E   
Sbjct: 264 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 323

Query: 282 IFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
            F+ M++    P+ V+ SSI+   A+ + L +G Q+HG+++R   + ++ IA++L+ +Y+
Sbjct: 324 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYA 383

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G +  A W+FD M   D+VSW ++I     H   ++A+  F++ME +GV P+++ F++
Sbjct: 384 KCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMA 443

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L+AC+H G V    + F+ M + Y I P +EHYA + +L GR G ++EAY  I + M  
Sbjct: 444 VLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISD-MHI 502

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           E +  VW  LL AC +H N+ + E  ++KLF ++P N   + LL  IY  AGR  D  ++
Sbjct: 503 EPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKL 562

Query: 516 ERMLVDRGLE 525
              + D+G++
Sbjct: 563 RIAMRDKGMK 572



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 213/415 (51%), Gaps = 42/415 (10%)

Query: 96  SLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +LL+    +K+     +LH +++ T+L   +  + S +L +Y+   L+ ++  +F+ + +
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSL--PSPSLLSTILSIYSNLNLLHDSLLIFNSLPS 67

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
                  W S+I  Y   G +  +++ + QM   G  PD   FP VLK+C  +  +R GE
Sbjct: 68  PPT-TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGE 126

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYA------------------KCGDIVKA-------- 248
            VH   +R G GFD +  NAL++MY+                  K  D+           
Sbjct: 127 SVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYL 186

Query: 249 ---RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
              R VF+ +  +D++S+N++++G   +G+  +A  + R M      PD   +SS+L   
Sbjct: 187 GSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIF 246

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A    L  G ++HG+ +R G + D+ I +SLI +Y+K  ++D +C +F  +PQ D +SWN
Sbjct: 247 AEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 306

Query: 363 SIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           SII    ++    E L +F+QM    + P+H++F S++ ACAHL ++ +G++L   ++ +
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII-R 365

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
                 V   + +V++Y + G I  A   I +KME     V W A++    LHG+
Sbjct: 366 SRFDGNVFIASALVDMYAKCGNIRTA-RWIFDKMEL-YDMVSWTAMIMGYALHGH 418


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 247/456 (54%), Gaps = 18/456 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH----RLIPTNLLRKNKGISSKLLRLYAT 138
           +Q+       T  +LL    Q  A+  G  +H    R    +  +    + + LL +YA 
Sbjct: 221 MQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAK 280

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQF 195
            G +  A +VF+ M+ R      W++L+ G+   G   +A +L+  M  +G+    P   
Sbjct: 281 CGHLVYASRVFEAMAVRNEVT--WSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT-- 336

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           +    L+ACA L  + +G+++H    + G   D    N+L+ MYAK G I +A T+FD++
Sbjct: 337 SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQM 396

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGA 312
             KD +SY+++++GY+ +G   EAF +FR M      PD   + S++   S    L+ G 
Sbjct: 397 VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGK 456

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
             HG V+ RG+  +  I N+LI +Y+K G++D +  +FD MP +D+VSWN++I     H 
Sbjct: 457 CGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHG 516

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EA   F  M+     PD +TF+ L+SAC+H G V  G+R F +M  KYGI+PR+EHY
Sbjct: 517 LGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHY 576

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
             MV+L  R G +DEAY  I + M  +A   VWGALL AC +H N+ +G+  +  + +L 
Sbjct: 577 IGMVDLLARGGFLDEAYQFI-QGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLG 635

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           P+   NF LL  I+  AGR D+   V  +  ++G +
Sbjct: 636 PEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFK 671



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 159/322 (49%), Gaps = 19/322 (5%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A  +FDQ+         +N+LI  Y+  G                 +P+ +TFP 
Sbjct: 77  GDLSLARHLFDQIP--APGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPF 134

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VLKAC+ L  +R    VH  A R G   D FV  ALVD+YAKC     A TVF R+  +D
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGAQV 314
           ++++N+ML GY  HG   +  D    ++L   D  P     VA+  +LA    L  G  V
Sbjct: 195 VVAWNAMLAGYALHG---KYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAV 251

Query: 315 HGWVLRRGVEWD----LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-- 368
           H + +R     D    + +  +L+ +Y+K G L  A  +F+ M  ++ V+W++++     
Sbjct: 252 HAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVL 311

Query: 369 -SKDHEALIYFEQMERDGV-LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
             +  EA   F+ M   G+      +  S L ACA+L  + +G++L +++  K G+   +
Sbjct: 312 CGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLA-KSGLHTDL 370

Query: 427 EHYACMVNLYGRAGLIDEAYSM 448
                ++++Y +AGLID+A ++
Sbjct: 371 TAGNSLLSMYAKAGLIDQATTL 392



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 12/234 (5%)

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CGD+  AR +FD+I    +  YN+++  Y   G  +               P+      +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 302 LANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L   S    LR    VH    R G+  DL ++ +L+ VY+K      A  +F  MP +DV
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           V+WN+++     H K  + +     M+ D   P+  T V+LL   A  G++  G  + + 
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 416 MVEKYGISPRVEHY---ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            V    +    +       ++++Y + G +  A S + E M    + V W AL+
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYA-SRVFEAMAVR-NEVTWSALV 306


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/471 (30%), Positives = 257/471 (54%), Gaps = 16/471 (3%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ--LKAVEHGIKLHRLIPTNLLRKN 125
           ++ + D +++ L   +++G+ + +    S L+ C      ++E G  LH       L  +
Sbjct: 198 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD 257

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED-----AIA 180
             + + LL  YA  G +++A ++F  M +     +  N++I+G+ ++    D     A+ 
Sbjct: 258 VVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY--NAMIAGFLQMETMADEFANEAMY 315

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           L+F+M+  G++P +FTF  +LKAC+ +     G+++H    ++    D F+ NALV++Y+
Sbjct: 316 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 375

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
             G I      F      D++S+ S++ G++ +G       +F  ++ +G  PD   IS 
Sbjct: 376 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 435

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L   AN + ++ G Q+H + ++ G+     I NS I +Y+K G +D A   F      D
Sbjct: 436 MLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPD 495

Query: 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VSW+ +I +   H    EA+  FE M+  G+ P+H+TF+ +L AC+H G V+ G R F 
Sbjct: 496 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 555

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +M + +GI+P V+H AC+V+L GRAG + EA S I++   FE  PV+W +LL AC +H  
Sbjct: 556 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDS-GFEGDPVMWRSLLSACRVHKA 614

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              G+  A+++ ELEP+   ++ LL  IY +AG       +  ++ DRG++
Sbjct: 615 TDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVK 665



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 215/457 (47%), Gaps = 27/457 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ + + T+  L++   +  ++ HG   H  +     +    + + LL +Y   G  D A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M  R   +  WNSLISGY ++G Y + + L+ +     +  D+FTF   L  C 
Sbjct: 74  KKLFDRMPKRNVVS--WNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG 131

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +R+G  +H      G G    + N+L+DMY KCG I  AR VF+     D +S+NS
Sbjct: 132 RTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-----ASLLRIGAQVHGWVLR 320
           ++ GY+  G   E   +   M+ +G + +  A+ S L       +S +  G  +HG  ++
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH--------AHSKDH 372
            G++ D+ +  +L+  Y+K G L+ A  +F  MP  +VV +N++I         A    +
Sbjct: 252 LGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFAN 311

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA+  F +M+  G+ P   TF S+L AC+ + + + G+++ +  + KY +         +
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHA-QIFKYNLQSDEFIGNAL 370

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQK-LFE 487
           V LY  +G I++          F ++P    V W +L+     +G    G T   + LF 
Sbjct: 371 VELYSLSGSIEDGLKC------FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFS 424

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
               +E    +++    N   +   E++    +  G+
Sbjct: 425 GRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGI 461


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 253/481 (52%), Gaps = 41/481 (8%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           Q+L S I  L S    G+      F S+L++C  L  +  G  LH  I    L  +    
Sbjct: 89  QSLGSFIGMLAS----GLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTG 144

Query: 130 SKLLRLYATFGLIDE-------AHQVFDQMSNRTAFA----------------------- 159
           + L+ +Y+    ++E       A +VFD+M+ RT                          
Sbjct: 145 NALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDL 204

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WN++I+G A  G YE+ + +  +M    ++PD FT   VL   A    I  G+++H  
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           ++R G   D +V ++L+DMYAKC  +  +  VF  +  +D IS+NS++ G + +GL  E 
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEG 324

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
              FR M++    P   + SSI+   A+ + L +G Q+HG++ R G + ++ IA+SL+ +
Sbjct: 325 LRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 384

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y+K G +  A  +FD M  +D+VSW ++I     H +  +A+  FEQME +G+ P+H+ F
Sbjct: 385 YAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAF 444

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +++L+AC+H G V    + F+ M   +GI+P VEHYA + +L GRAG ++EAY  I   M
Sbjct: 445 MAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFIC-GM 503

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
               +  +W  LL AC +H N+ M E  A ++ E++P+N   + LL  IY  A R  +  
Sbjct: 504 HIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAA 563

Query: 514 R 514
           +
Sbjct: 564 K 564



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 188/378 (49%), Gaps = 45/378 (11%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y+   L+ ++ ++F+ +    A A  W S+I  Y   G    ++  +  M   G+ PD 
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALA--WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDH 106

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK------------- 241
             FP VLK+CA L  + +GE +H   +R G  FD +  NAL++MY+K             
Sbjct: 107 NVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLG 166

Query: 242 CGDIV-------------------KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G++                      R +F+ +  KDL+S+N+++ G   +GL  E   +
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 283 FRGMILNGFDPDPVAISSILA----NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
            R M      PD   +SS+L     N  + R G ++HG  +R+G++ D+ +A+SLI +Y+
Sbjct: 227 IREMGGANLKPDSFTLSSVLPLIAENVDISR-GKEIHGCSIRQGLDADIYVASSLIDMYA 285

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVS 395
           K  ++  +C +F  + ++D +SWNSII    ++    E L +F QM    + P   +F S
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           ++ ACAHL ++ +G++L    + + G    +   + +V++Y + G I  A   I ++M  
Sbjct: 346 IMPACAHLTTLHLGKQLHGY-ITRNGFDENIFIASSLVDMYAKCGNIRTA-KQIFDRMRL 403

Query: 456 EASPVVWGALLYACYLHG 473
               V W A++  C LHG
Sbjct: 404 R-DMVSWTAMIMGCALHG 420


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 250/460 (54%), Gaps = 25/460 (5%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL-LRKNKGISSKLLR 134
           ++ L   V  G+     TFAS L  C +L+ +  G ++H ++  +  L  N  ++S L+ 
Sbjct: 267 VEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVD 326

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPD 193
           +YA    +  A +VFD +   +     WN++I GYA+ G  E+A+ L+ +ME E G  P 
Sbjct: 327 MYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPS 386

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           + T   VL ACA        E +H   V+ G   + FV NAL+DMYA+ G++  AR +F 
Sbjct: 387 ETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFA 446

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD----------------PDPVA 297
            I  +D++S+N+++TG +  G   EAF +   M L                    P+ + 
Sbjct: 447 MIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNIT 506

Query: 298 ISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           + ++L   + L     G ++HG+ +R  +E D+ + ++L+ +Y+K G L  +  +FD +P
Sbjct: 507 LMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLP 566

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGE 410
           +++V++WN +I A   H    EA+  F++M   G   P+ +TF++ L+AC+H G V  G 
Sbjct: 567 RRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGL 626

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
            LF  M   +G+ P  + +AC+V++ GRAG +DEAYS+I      E     W +LL AC 
Sbjct: 627 ELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACR 686

Query: 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           LH NV +GE AA++LFELEP    ++ LL  IY  AG  D
Sbjct: 687 LHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWD 726



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 232/503 (46%), Gaps = 71/503 (14%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK---NK 126
           +ALD++   L     +   V + T  S+L  C  L   + G +L R      L++   ++
Sbjct: 151 RALDALRDMLAEGRHD---VSSFTLVSVLLACSHLPG-DDGRRLGREAHAFALKRGFLDE 206

Query: 127 GIS----SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP--------WNSLISGYAELGE 174
           G      + LL +YA  GL+D+A  +F      TA AF         WN++IS   + G 
Sbjct: 207 GRERFPFNALLSMYARLGLVDDAQSLF----RTTAAAFSPGGGDVVTWNTMISLLVQGGR 262

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLN 233
             +A+ + + M   GV PD  TF   L AC+ L ++ +G ++H   ++      + FV +
Sbjct: 263 CAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVAS 322

Query: 234 ALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-G 290
           ALVDMYA    +  AR VFD +   ++ L  +N+M+ GY   G+  EA ++F  M    G
Sbjct: 323 ALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAG 382

Query: 291 FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
             P    +S +L   A +        +HG+V++RG+  +  + N+L+ +Y++ G++D A 
Sbjct: 383 CAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVAR 442

Query: 348 WLFDHMPQKDVVSWNSII-----HAHSKDHEALI--------------YFEQMERDGVLP 388
            +F  +  +DVVSWN++I       H+ +   L+                E+ E    +P
Sbjct: 443 RIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMP 502

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +++T ++LL  CA L +   G+ +    V ++ +   +   + +V++Y + G +  A S 
Sbjct: 503 NNITLMTLLPGCAALAAPARGKEIHGYAV-RHALESDIAVGSALVDMYAKCGCL--AASR 559

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD-----NEHNFELLIKIY 503
            V       + + W  L+ A  +HG   +G+ A     E+        NE  F   +   
Sbjct: 560 AVFDRLPRRNVITWNVLIMAYGMHG---LGDEAVALFDEMAAGGEATPNEVTFIAALAAC 616

Query: 504 GNAGRLDDVERVERMLVDRGLEF 526
            ++G           LVDRGLE 
Sbjct: 617 SHSG-----------LVDRGLEL 628



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 188/396 (47%), Gaps = 41/396 (10%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           H   L R +   L R +  + + LL  YA  G +D A  +F   +     A  +NSLIS 
Sbjct: 86  HAAALRRAL---LHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISA 142

Query: 169 YAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACA---GLGLIRVGEKVHLDAVRFG 224
                ++E A+     M  EG  +   FT   VL AC+   G    R+G + H  A++ G
Sbjct: 143 LCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRG 202

Query: 225 F---GFDGFVLNALVDMYAKCGDIVKARTVFDRI------GNKDLISYNSMLTGYIHHGL 275
           F   G + F  NAL+ MYA+ G +  A+++F         G  D++++N+M++  +  G 
Sbjct: 203 FLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGR 262

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC---- 328
             EA ++   M+  G  PD V  +S L   S   +L +G ++H  VL+   + DL     
Sbjct: 263 CAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK---DADLAANSF 319

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSK---DHEALIYFEQMER 383
           +A++L+ +Y+ + K+  A  +FD +P+  + +  WN++I  +++   D EAL  F +ME 
Sbjct: 320 VASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEA 379

Query: 384 D-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           + G  P   T   +L ACA        E +   +V++     R    A M ++Y R G +
Sbjct: 380 EAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALM-DMYARLGEM 438

Query: 443 DEA---YSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           D A   ++MI  +       V W  L+  C + G+ 
Sbjct: 439 DVARRIFAMIDPR-----DVVSWNTLITGCVVQGHA 469


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 252/473 (53%), Gaps = 21/473 (4%)

Query: 43  ITTFSSYPKSSP---TPLLTN--QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
           +  F+ YPK      T ++T   Q   P+  L     ++      V   ++    T  S 
Sbjct: 160 VKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMV------VLEQVSPDPVTLVSA 213

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
              C QL     G  +H  +          +++ +L LY   G I  A  +F +M  +  
Sbjct: 214 ASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDI 273

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            +  W+S+++ YA+ G   +A+ L+ +M ++ +E ++ T    L+ACA    +  G+ +H
Sbjct: 274 IS--WSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIH 331

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
             AV +GF  D  V  AL+DMY KC     A  +F+R+  KD++S+  + +GY   G+  
Sbjct: 332 KLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAH 391

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLI 334
           ++  +F  M+  G  PD +A+  ILA +S L I  Q   +H +V + G + +  I  SLI
Sbjct: 392 KSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLI 451

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER-DGVLPDH 390
            +Y+K   +D A  +F  M +KDVV+W+SII A   H +  EAL  F QM     V P+ 
Sbjct: 452 ELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPND 511

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFVS+LSAC+H G ++ G ++F VMV +Y + P  EHY  MV+L GR G +D+A  MI 
Sbjct: 512 VTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMIN 571

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           E M  +A P VWGALL AC +H N+ +GE AA  LF L+P++   + LL  IY
Sbjct: 572 E-MPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIY 623



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 187/355 (52%), Gaps = 16/355 (4%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +    LLETC    ++    +LH       L  +  + +KL  LYA +  +  AH++F++
Sbjct: 5   DLLVKLLETCCSKISIP---QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEE 61

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFTFPRVLKACAGLG 208
              +T +   WN+L+  Y   G++ + ++L+ QM  + +    PD +T    LK+C+GL 
Sbjct: 62  TPCKTVYL--WNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQ 119

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            + +G+ +H    +     D FV +AL+++Y+KCG +  A  VF     +D++ + S++T
Sbjct: 120 KLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIIT 179

Query: 269 GYIHHGLLVEAFDIF-RGMILNGFDPDPVAI---SSILANASLLRIGAQVHGWVLRRGVE 324
           GY  +G    A   F R ++L    PDPV +   +S  A  S   +G  VHG+V RRG +
Sbjct: 180 GYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD 239

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQM 381
             LC+ANS++ +Y K G +  A  LF  MP KD++SW+S++  ++    +  AL  F +M
Sbjct: 240 TKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEM 299

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
               +  + +T +S L ACA   +++ G+ +  + V  YG    +     ++++Y
Sbjct: 300 IDKRIELNRVTVISALRACASSSNLEEGKHIHKLAV-NYGFELDITVSTALMDMY 353



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 211/441 (47%), Gaps = 20/441 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +  L++C  L+ +E G  +H  +    +  +  + S L+ LY+  G +++A +VF + 
Sbjct: 107 TVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEY 166

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIR 211
             +      W S+I+GY + G  E A+A + +M   E V PD  T      ACA L    
Sbjct: 167 PKQDVVL--WTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFN 224

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G  VH    R GF     + N+++++Y K G I  A  +F  +  KD+IS++SM+  Y 
Sbjct: 225 LGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYA 284

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +G    A ++F  MI    + + V + S L   A++S L  G  +H   +  G E D+ 
Sbjct: 285 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDIT 344

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDG 385
           ++ +L+ +Y K      A  LF+ MP+KDVVSW  +   +++    H++L  F  M   G
Sbjct: 345 VSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYG 404

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             PD +  V +L+A + LG V+    L +  V K G        A ++ LY +   ID A
Sbjct: 405 TRPDAIALVKILAASSELGIVQQALCLHA-FVSKSGFDNNEFIGASLIELYAKCSSIDNA 463

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE-----PDNEHNFELLI 500
               V K       V W +++ A   HG    GE A +  +++        N+  F  ++
Sbjct: 464 NK--VFKGMRRKDVVTWSSIIAAYGFHGQ---GEEALKLFYQMSNHSDVKPNDVTFVSIL 518

Query: 501 KIYGNAGRLDDVERVERMLVD 521
               +AG +++  ++  ++V+
Sbjct: 519 SACSHAGLIEEGIKMFHVMVN 539



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 159/327 (48%), Gaps = 22/327 (6%)

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   ++ G   D FV+  L  +YA+   +  A  +F+    K +  +N++L  Y   G
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 275 LLVEAFDIFRGMILNGFD---PDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC 328
             VE   +F  M  +      PD   +S  L + S    L +G  +HG++ ++ ++ D+ 
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMF 141

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM-ERD 384
           + ++LI +YSK G+++ A  +F   P++DVV W SII  + ++     AL +F +M   +
Sbjct: 142 VGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 201

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V PD +T VS  SACA L    +G  +    V++ G   ++     ++NLYG+ G I  
Sbjct: 202 QVSPDPVTLVSAASACAQLSDFNLGRSVHG-FVKRRGFDTKLCLANSILNLYGKTGSIRS 260

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL----- 499
           A ++  E M ++   + W +++ ACY        ET A  LF    D       +     
Sbjct: 261 AANLFRE-MPYK-DIISWSSMV-ACYADNG---AETNALNLFNEMIDKRIELNRVTVISA 314

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLEF 526
           ++   ++  L++ + + ++ V+ G E 
Sbjct: 315 LRACASSSNLEEGKHIHKLAVNYGFEL 341


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 256/446 (57%), Gaps = 14/446 (3%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           ++     +L  C + + ++ G ++H ++          + + ++ +Y+  G++ EA +VF
Sbjct: 3   ESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVF 62

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           + +  R   +  WN++I+GY      E+A+ L+ +M E+G  PD +T+   LKAC+    
Sbjct: 63  NTLPVRNVIS--WNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADA 120

Query: 210 IRVGEKVHLDAVRFGFGF--DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
              G ++H   +R GF +     V  ALVD+Y KC  + +AR VFDRI  K ++S+++++
Sbjct: 121 AGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLI 180

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR--RG 322
            GY     L EA D+FR +  +    D   +SSI+   A+ +LL  G Q+H + ++   G
Sbjct: 181 LGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYG 240

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFE 379
           +  ++ +ANS++ +Y K G   +A  LF  M +++VVSW  +I  + K    ++A+  F 
Sbjct: 241 L-LEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFN 299

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+ +G+ PD +T++++LSAC+H G +K G++ FS++     I P+VEHYACMV+L GR 
Sbjct: 300 EMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRG 359

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EA ++I EKM  + +  +W  LL  C +HG+V MG+   + L   E +N  N+ ++
Sbjct: 360 GRLKEAKNLI-EKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMV 418

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y +AG   + E++   L  +GL+
Sbjct: 419 SNMYAHAGYWKESEKIRETLKRKGLK 444


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/397 (36%), Positives = 236/397 (59%), Gaps = 12/397 (3%)

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-LGEYEDAIALYFQMEEEGV-EPDQ 194
           + +G ID A ++F Q+     F+  WNS+I G ++     ++ + L+ +M   G   P+ 
Sbjct: 35  SPYGDIDYARKLFSQIQRPNIFS--WNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 92

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FT   VLKAC+ +  +  G++VH + ++ GFG   FV  ALV+ YAKC DIV A  VFD 
Sbjct: 93  FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDE 152

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           I +++L+++++M++GY   GL+ EA  +FR M   G  PD V + S++   A +  L  G
Sbjct: 153 ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 212

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
             VH ++ ++ +E DL ++ +L+ +Y+K G +++A  +FD MP KD  +W+S+I   + +
Sbjct: 213 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAIN 272

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               +AL  F +ME   V P+H+TF+ +LSACAH G V  G R +S M+E +GI P +E 
Sbjct: 273 GLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMEL 331

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y CMV+L  RA L+++A ++ VE M    +PV+W  LL  C    N+   E  AQ+L EL
Sbjct: 332 YGCMVDLLCRASLVEDACTL-VETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLEL 390

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           EP N  N+ LL  +Y +  + + + +V + +   G++
Sbjct: 391 EPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIK 427



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 148/284 (52%), Gaps = 14/284 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRLYATFGLIDEA 145
            T T A +L+ C  + A+E G ++H     N+L+   G    + + L+  YA    I  A
Sbjct: 91  NTFTMAFVLKACSIVSALEEGQQVH----ANVLKSGFGSSPFVETALVNFYAKCEDIVLA 146

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD++++R   A  W+++ISGYA +G   +A+ L+  M++ GV PD+ T   V+ ACA
Sbjct: 147 SKVFDEITDRNLVA--WSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACA 204

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +  G+ VH    +     D  +  ALV+MYAKCG I +A+ VFD +  KD  +++S
Sbjct: 205 ASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSS 264

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+ G   +GL  +A + F  M      P+ V    +L   A++ L+  G +    +L  G
Sbjct: 265 MIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFG 324

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           +   + +   ++ +  +   ++ AC L + MP   + V W +++
Sbjct: 325 IVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 368



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T  S++  C    A++ G  +H  I   L+  +  +S+ L+ +YA  G I+
Sbjct: 186 KAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIE 245

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD M  +   A  W+S+I G A  G  EDA+  +F+MEE  V+P+  TF  VL A
Sbjct: 246 RAKEVFDAMPVKDTKA--WSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSA 303

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLIS 262
           CA  GL+  G +     + FG      +   +VD+  +   +  A T+ + +  + + + 
Sbjct: 304 CAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVI 363

Query: 263 YNSMLTG 269
           + ++L G
Sbjct: 364 WRTLLVG 370


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 253/450 (56%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G    + TF   ++    LK +E G ++ R         +  + S +L LY   G I
Sbjct: 98  VNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKI 157

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  VFD+M  R      W ++I+G  + G   +A+ ++ +M +EG+E D      +++
Sbjct: 158 DEAKLVFDKMVKRDVVC--WATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQ 215

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           ACA LG +++G  VH  AVR     D  +L  +LVDMYAK GD+  A  VF+++  K+ +
Sbjct: 216 ACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAV 275

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD-PVAISSILANASL--LRIGAQVHGWV 318
           S+ ++++G+  +G    A D+   M    F PD  V +S++LA + +  L++G  +HG++
Sbjct: 276 SWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYI 335

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
           +RR + ++L +  +LI +Y+K G L  A  +FD +  +DV+ WN++I +   H    E L
Sbjct: 336 VRR-LGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVL 394

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +M+   + PDH TF SLLSA +H G V VG+  F+ MV +  I P  +HYACMV+L
Sbjct: 395 SLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDL 454

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           + RAG ++EAY +I E M  E    +W ALL  C+ + N+  GE AA+K+ +L PD+   
Sbjct: 455 FSRAGRVEEAYQLI-ESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGI 513

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + L+   +  A   D V  + +++ + G++
Sbjct: 514 YALVSNFFSLARMWDRVSILRKIMKETGMK 543



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 228/451 (50%), Gaps = 45/451 (9%)

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
           +I T L   N   +  ++  YA  G I  A  +FD++  R   A  WN++I  Y+     
Sbjct: 30  IITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDA--WNAMIVAYSRRYHL 87

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
            + + LY QM  EG +PD  TF   +KA + L  +  GE++   AV FG+G D FV +++
Sbjct: 88  TEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSV 147

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +++Y KCG I +A+ VFD++  +D++ + +M+TG + +G ++EA D+FR M   G + D 
Sbjct: 148 LNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDG 207

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFD 351
           V +  ++   AN   L++G  VHG  +RR +   D+ +  SL+ +Y+K G L+ A  +F+
Sbjct: 208 VLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFE 267

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            MP+K+ VSW ++I   +++     AL    +M+     PD    VS L AC+ +G +K+
Sbjct: 268 QMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKL 327

Query: 409 GERLFSVMVEKYGI-----SPRVEHYA------------------------CMVNLYGRA 439
           G+ +   +V + G      +  ++ YA                         M+  YG  
Sbjct: 328 GKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIH 387

Query: 440 GLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNEH 494
           G   E  S+ ++  E   SP    + +LL A    G V +G+    A     ++ P  +H
Sbjct: 388 GDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKH 447

Query: 495 NFELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
            +  ++ ++  AGR+++  + +E M  + GL
Sbjct: 448 -YACMVDLFSRAGRVEEAYQLIESMNTEPGL 477


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/397 (36%), Positives = 236/397 (59%), Gaps = 12/397 (3%)

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-LGEYEDAIALYFQMEEEGV-EPDQ 194
           + +G ID A ++F Q+     F+  WNS+I G ++     ++ + L+ +M   G   P+ 
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFS--WNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 161

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FT   VLKAC+ +  +  G++VH + ++ GFG   FV  ALV+ YAKC DIV A  VFD 
Sbjct: 162 FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDE 221

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           I +++L+++++M++GY   GL+ EA  +FR M   G  PD V + S++   A +  L  G
Sbjct: 222 ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 281

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
             VH ++ ++ +E DL ++ +L+ +Y+K G +++A  +FD MP KD  +W+S+I   + +
Sbjct: 282 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAIN 341

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               +AL  F +ME   V P+H+TF+ +LSACAH G V  G R +S M+E +GI P +E 
Sbjct: 342 GLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMEL 400

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y CMV+L  RA L+++A ++ VE M    +PV+W  LL  C    N+   E  AQ+L EL
Sbjct: 401 YGCMVDLLCRASLVEDACTL-VETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLEL 459

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           EP N  N+ LL  +Y +  + + + +V + +   G++
Sbjct: 460 EPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIK 496



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T  S++  C    A++ G  +H  I   L+  +  +S+ L+ +YA  G I+
Sbjct: 255 KAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIE 314

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD M  +   A  W+S+I G A  G  EDA+  +F+MEE  V+P+  TF  VL A
Sbjct: 315 RAKEVFDAMPVKDTKA--WSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSA 372

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLIS 262
           CA  GL+  G +     + FG      +   +VD+  +   +  A T+ + +  + + + 
Sbjct: 373 CAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVI 432

Query: 263 YNSMLTG 269
           + ++L G
Sbjct: 433 WRTLLVG 439


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 246/446 (55%), Gaps = 18/446 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF   ++ C  +  ++   K+H L+    L  +  I S L+  Y  FGL++ A
Sbjct: 134 GVIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHA 190

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              F+++  R      WN++++GYA++G++E  +  + +M +E V P +FT   VL   A
Sbjct: 191 QVAFEELPIRDVVL--WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFA 248

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G +  G  +H  A++ G+     V N+L+DMY KC  I  A  +F+ +  KD+ S+NS
Sbjct: 249 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           +++ +   G       +   M+  G  PD V ++++L   S L     G ++HG+++  G
Sbjct: 309 IVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSG 368

Query: 323 VEW------DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           +        D+ + N++I +Y+K G +  A  +F+ M  KDV SWN +I     H   +E
Sbjct: 369 LGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNE 428

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F +M    + PD +TFV +LSAC+H G V  G      M  KY ++P +EHY C++
Sbjct: 429 ALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVI 488

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++ GRAG +DEAY + +  M  EA+PVVW ALL AC LH +  + E AAQ++FELEP++ 
Sbjct: 489 DMLGRAGQLDEAYELAL-TMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHC 547

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
            ++ L+  +YG  GR ++V  V   +
Sbjct: 548 GSYVLMSNVYGAVGRYEEVLEVRHTM 573



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 219/469 (46%), Gaps = 55/469 (11%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T   ASL  + +  K +  G ++H  +  N    +    + L+ +Y+    ++ A  +F 
Sbjct: 38  TTCIASLQASAHH-KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFS 96

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
             ++     F +N++ISG+   G  E+    Y +M  EGV PD+FTFP  +KAC  +  I
Sbjct: 97  DPTHEIN-VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI 155

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           +   K+H    +FG   D F+ +ALV+ Y K G +  A+  F+ +  +D++ +N+M+ GY
Sbjct: 156 K---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDL 327
              G      + FR M      P    ++ +L+  ++   L  G  +HG+ ++ G +  +
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DHEA-LIYFEQMERD 384
            ++NSLI +Y K   ++ A  +F+ M +KD+ SWNSI+  H +  DH+  L   ++M   
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV------------------------EKY 420
           G+ PD +T  ++L AC+HL ++  G  +   M+                         K 
Sbjct: 333 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 392

Query: 421 GISPRVEH-------------YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGAL 465
           G S R  H             +  M+  YG  G  +EA  M     E +  P  V +  +
Sbjct: 393 G-SMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGV 451

Query: 466 LYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
           L AC   G V  G     ++   +++ P  EH +  +I + G AG+LD+
Sbjct: 452 LSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH-YTCVIDMLGRAGQLDE 499



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 8/149 (5%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSK 131
           D  ++ L+  +  GI     T  ++L  C  L A+ HG ++H  +I + L +  K I   
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 132 LLR-----LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
           LL+     +YA  G + +AH VF++MSN+   +  WN +I GY   G   +A+ ++ +M 
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVAS--WNIMIMGYGMHGYGNEALEMFSRMC 437

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           E  ++PD+ TF  VL AC+  G +  G  
Sbjct: 438 EVQLKPDEVTFVGVLSACSHAGFVSQGRN 466


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 267/473 (56%), Gaps = 17/473 (3%)

Query: 66  KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLR-- 123
           K +L+ L      L  +      + T  F   L T          + + R+I  ++++  
Sbjct: 16  KHQLKPLTYCCSFLSQTSLQFNAISTHHFDPFLSTLILHLKSSSSVSICRIIHAHVIKSL 75

Query: 124 --KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
             ++  I  +L+  Y   G   +A+ +FD+M  +   +  WNSL+SG A++G+  + +++
Sbjct: 76  DYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVS--WNSLVSGLAKIGQLGECLSV 133

Query: 182 YFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           + +M+ +  ++ ++FTF  V+ AC        G  VH  A++ G  ++  V+NALV+MY 
Sbjct: 134 FCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYG 193

Query: 241 KCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           K G +  A  +F  +    K ++S+NS++     +G+  EAF+ F  M +NGF PD   +
Sbjct: 194 KFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATM 253

Query: 299 SSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
            S+L    N  L R+   +HG +   G++ +L I  +L+ +YSK G+L+ +  +F+ + +
Sbjct: 254 VSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISK 313

Query: 356 KDVVSWNSIIHA---HSKDHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGER 411
            D V+W +++     H    EA+ +FE++ R+ G+ PDH+TF  LLSAC+H G VK G+ 
Sbjct: 314 PDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKY 373

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
            F VM + Y + PR++HY+CMV+L GR GL+D+A+ +I + M FE +  VWGALL AC +
Sbjct: 374 FFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELI-KNMPFEPNSGVWGALLGACRV 432

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           H N+ +G+ AA+ L  L+P +  N+ +L  +Y  AG  +D  +V  ++ ++ L
Sbjct: 433 HRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVL 485


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 248/451 (54%), Gaps = 42/451 (9%)

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H  I +  L +N  +++KL+  YA       +  VFD + ++  F   WNSLI+GYA+  
Sbjct: 46  HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFL--WNSLINGYAKNR 103

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            Y +A  L+ QM    V PD FT   + K  + LG +  G+ +H  ++R GF  D  V N
Sbjct: 104 LYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVAN 163

Query: 234 ALVDMYAKC-------------------------------GDIVKARTVFDRIGNKDLIS 262
           +++ MY KC                               G++V  R VFDR+  +++ S
Sbjct: 164 SIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFS 223

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           + +M+ GY+ +G   EA  +FR M +++G +P+ V++ S+L   ++ S L  G Q+HG+ 
Sbjct: 224 WTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFA 283

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHMPQKDVVSWNSIIHA---HSKDHEA 374
           +R+ +  ++ + N+LI +YSK G LD A  +F D    KD +SW+S+I     H K  EA
Sbjct: 284 VRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEA 343

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           ++ +++M + G+ PD +T V +LSAC+  G V  G  ++S ++  YGI P +E +AC+V+
Sbjct: 344 ILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVD 403

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           + GRAG +D A   I + M  E  P VWGAL+    +HG++ M E A + L +LEP+N  
Sbjct: 404 MLGRAGQLDPALDFI-KAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPS 462

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           N+  +  +Y ++ R D V  V RM+ D+ L 
Sbjct: 463 NYVSISNLYASSRRWDAVAEVRRMMKDKRLR 493



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 136/302 (45%), Gaps = 40/302 (13%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +++  + H   +  G   +  +   L+  YA C     +R VFD + +K++  +NS++ G
Sbjct: 39  LKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWD 326
           Y  + L  EAF +F  M  +   PD   +S++   +S L     G  +HG  +R G   D
Sbjct: 99  YAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSD 158

Query: 327 LCIANSLIVVYSKDGKLDQA-------------CW------------------LFDHMPQ 355
             +ANS++ +Y K G  +++              W                  +FD M  
Sbjct: 159 TVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKC 218

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGER 411
           ++V SW ++I+ + ++    EAL  F  M+  DG+ P+ ++ VS+L AC+    +  G +
Sbjct: 219 RNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQ 278

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +    V K  ++  V     ++++Y + G +D A   + E        + W +++    L
Sbjct: 279 IHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSA-RRVFEDDSLCKDAISWSSMISGYGL 336

Query: 472 HG 473
           HG
Sbjct: 337 HG 338



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 24/303 (7%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           S+ +D++  V +GI     +  S+L  C     +  G ++H       L     + + L+
Sbjct: 242 SLFRDMQ--VIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 299

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            +Y+  G +D A +VF+  S     A  W+S+ISGY   G+ ++AI LY +M + G+ PD
Sbjct: 300 DMYSKCGSLDSARRVFEDDS-LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 358

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCG------DIV 246
             T   +L AC+  GL+  G  ++   +  +G      +   +VDM  + G      D +
Sbjct: 359 MITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFI 418

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDP-DPVAISSILAN 304
           KA  V           + ++++  I HG L      +R +I L   +P + V+IS++ A+
Sbjct: 419 KAMPV-----EPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYAS 473

Query: 305 ASLLRIGAQVHGWV----LRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           +      A+V   +    LR+  G  W + I N     Y+    L Q C +   +     
Sbjct: 474 SRRWDAVAEVRRMMKDKRLRKVPGCSW-ISINNKTHCFYTLKYSLRQVCLILLFIILSPS 532

Query: 359 VSW 361
            SW
Sbjct: 533 FSW 535


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 246/446 (55%), Gaps = 10/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ V + T  ++L  C  +  +  G  LH              ++ LL +Y+  G ++ A
Sbjct: 254 GVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGA 313

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           ++VF +M   T  +  W S+I+ +   G + +AI L+ +M+ +G+ PD +    V+ ACA
Sbjct: 314 NEVFVKMGETTIVS--WTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACA 371

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G +VH    +   G +  V NAL++MYAKCG + +A  +F ++  K+++S+N+
Sbjct: 372 CSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNT 431

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+ GY  + L  EA  +F  M      PD V ++ +L   A  + L  G ++HG +LR+G
Sbjct: 432 MIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKG 490

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              DL +A +L+ +Y K G L  A  LFD +P+KD++ W  +I     H    EA+  FE
Sbjct: 491 YFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFE 550

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   G+ P+  +F S+L AC H G +K G +LF  M  +  I P++EHYACMV+L  R+
Sbjct: 551 KMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRS 610

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +  AY  I E M  +    +WGALL  C +H +V + E  A+ +FELEP+N   + LL
Sbjct: 611 GNLSRAYKFI-ETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLL 669

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y  A + ++V++++R +   GL+
Sbjct: 670 ANVYAEAEKWEEVKKIQRRISKGGLK 695



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 207/363 (57%), Gaps = 9/363 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           ++  T+ S+L+ C +LK++E G ++H +I +N +  ++ + +KL+ +Y   G + +  ++
Sbjct: 55  LELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRI 114

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD + N   F   WN L+S YA++G Y +++ L+ +M+E G+  D +TF  VLK  A   
Sbjct: 115 FDGILNDKIFL--WNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASA 172

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R  ++VH   ++ GFG    V+N+L+  Y KCG++  AR +FD + ++D++S+NSM++
Sbjct: 173 KVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
           G   +G      + F  M+  G D D   + ++L   AN   L +G  +H + ++ G   
Sbjct: 233 GCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSG 292

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
            +   N+L+ +YSK G L+ A  +F  M +  +VSW SII AH ++   +EA+  F++M+
Sbjct: 293 GVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ 352

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ PD     S++ ACA   S+  G  + +  ++K  +   +     ++N+Y + G +
Sbjct: 353 SKGLRPDIYAVTSVVHACACSNSLDKGREVHN-HIKKNNMGSNLPVSNALMNMYAKCGSM 411

Query: 443 DEA 445
           +EA
Sbjct: 412 EEA 414



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 208/398 (52%), Gaps = 20/398 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI   + TF  +L+       V    ++H  +          + + L+  Y   G ++ A
Sbjct: 153 GIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESA 212

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD++S+R   +  WNS+ISG    G   + +  + QM   GV+ D  T   VL ACA
Sbjct: 213 RILFDELSDRDVVS--WNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACA 270

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G + +G  +H   V+ GF       N L+DMY+KCG++  A  VF ++G   ++S+ S
Sbjct: 271 NVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTS 330

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++  ++  GL  EA  +F  M   G  PD  A++S++   A ++ L  G +VH  + +  
Sbjct: 331 IIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNN 390

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           +  +L ++N+L+ +Y+K G +++A  +F  +P K++VSWN++I  +S++   +EAL  F 
Sbjct: 391 MGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFL 450

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC-MVNLYGR 438
            M++  + PD +T   +L ACA L +++ G  +   ++ K   S    H AC +V++Y +
Sbjct: 451 DMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL--HVACALVDMYVK 507

Query: 439 AGLI---DEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            GL+    + + MI +K       ++W  ++    +HG
Sbjct: 508 CGLLVLAQQLFDMIPKK-----DMILWTVMIAGYGMHG 540


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 237/440 (53%), Gaps = 13/440 (2%)

Query: 93  TFASLLETCYQLKA-VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T  + L+ C +L   +  G + H +           + + L+  Y   G   +A +VFD+
Sbjct: 119 TLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDE 178

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M+ R   +  W +L+S +   G + +A+ +  +M+   V P++ T   VL AC  LG  R
Sbjct: 179 MAERDVVS--WTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACGNLGTAR 233

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+ VH    R     +  V NAL+DMY KC  +  AR VFD +  +D++S+  M++G +
Sbjct: 234 AGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLV 293

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLC 328
                 EA ++F  M ++G  PD V +S++L A ASL  L  G  VH ++ R+G+EWD+ 
Sbjct: 294 QCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVH 353

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +  S++ +Y K G LD A  +F  MP K+V SWN++I+    H +  EAL  F++M   G
Sbjct: 354 VGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASG 413

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+ +TF+++L AC H G V+ G +LF +M + Y +SP  +HY CMV+L GRAGLI EA
Sbjct: 414 LHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEA 473

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y  +++ M        W  LL AC  HG +   +     + ELE      + LL  +Y  
Sbjct: 474 YD-VIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAV 532

Query: 506 AGRLDDVERVERMLVDRGLE 525
           + R  DV +    + ++G++
Sbjct: 533 SDRWADVGKARGFMNEKGMQ 552



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 166/331 (50%), Gaps = 18/331 (5%)

Query: 155 RTAFAFPWNSLISGYAELGEYEDA-----IALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           R   A P+N+LIS     G+   A     + L       G  PD +T P  LKACA LG 
Sbjct: 73  RPRCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGG 132

Query: 210 -IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R G + H  A + GF     V NALV  Y  CG    AR VFD +  +D++S+ ++L+
Sbjct: 133 GLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLS 192

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
            +   G+ +EA  +   M +    P+ V ++S+L    N    R G  VHGW  RR  E 
Sbjct: 193 AFTRGGMFMEALGVLAEMDVT---PNEVTLASVLVACGNLGTARAGKAVHGWYFRREKEL 249

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           +L + N+L+ +Y K  KLD A  +FD +  +D+VSW  +I       +  EAL  F  M+
Sbjct: 250 NLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQ 309

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             GV PD +   ++LSACA LG+++ G R     +E+ GI   V     +V++Y + G +
Sbjct: 310 ISGVKPDKVVLSTVLSACASLGALESG-RWVHEYIERKGIEWDVHVGTSVVDMYVKCGCL 368

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           D A S+  E      S   W AL+    LHG
Sbjct: 369 DTAVSIFQEMPLKNVSS--WNALINGFALHG 397



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 29/327 (8%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +T    T AS+L  C  L     G  +H          N  + + LL +Y     +D A 
Sbjct: 212 VTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLAR 271

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VFD +  R   +  W  +ISG  +     +A+ ++  M+  GV+PD+     VL ACA 
Sbjct: 272 RVFDMLLARDIVS--WTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACAS 329

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           LG +  G  VH    R G  +D  V  ++VDMY KCG +  A ++F  +  K++ S+N++
Sbjct: 330 LGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNAL 389

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD 326
           + G+  HG   EA D F  M+ +G  P+ V   ++L        GA  H  +++ G    
Sbjct: 390 INGFALHGRGREALDCFDRMVASGLHPNEVTFITVL--------GACCHSGLVQEG---- 437

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386
                 L  + +K  KL    W   +    D++    +I       EA    + M    +
Sbjct: 438 ----RQLFELMTKSYKLSP--WEDHYGCMVDLLGRAGLI------QEAYDVIKAMP---M 482

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLF 413
            P   T+V+LLSAC   G +   +++ 
Sbjct: 483 RPGVFTWVTLLSACQAHGRMDFSQQIL 509


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 242/431 (56%), Gaps = 20/431 (4%)

Query: 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           C+  K ++ G  +   + T            L+ +Y+ F  I++  + F +MS R   +F
Sbjct: 268 CFHAKVLKLGCSMDVFVAT-----------ALVDMYSKFYDIEDVERAFGEMSKRNLVSF 316

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
             N+LI+GY+ +G+YE+A+ +Y Q++ EG+EPD FTF  +  +C+    +  G +VH+ +
Sbjct: 317 --NALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHS 374

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
           V+FG   D  V N++V+ Y+KCG    A   F+ I   + + +  +++G+  +G   +A 
Sbjct: 375 VKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKAL 434

Query: 281 DIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
             F  M       D  + SS++   S    +  G  +H  V++ G++  + + +++I +Y
Sbjct: 435 MQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMY 494

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
           SK G ++ A  +F  MP+K+VVSWNS+I  ++++    EAL+ F++M   G+LP  +TFV
Sbjct: 495 SKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFV 554

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
            +L AC+H G V+ G   +++MV  YGI P +EH  CMV+L GRAG ++EA + ++    
Sbjct: 555 GILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSS-S 613

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
           F   P +WG+LL AC +H N  +G  AAQ    LEP    ++  L  IY +     +V R
Sbjct: 614 FSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSR 673

Query: 515 VERMLVDRGLE 525
           +  ++ D G+E
Sbjct: 674 IRDLMKDMGVE 684



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 207/409 (50%), Gaps = 23/409 (5%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QAL   +Q L +    GI     T+++ +  C Q         LH LI          +S
Sbjct: 24  QALSCFLQMLRA----GIEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVS 79

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---- 185
           S L+ +Y+    I EA  +FD M  R   +  WNS+I+GY++ G  E+A  L+  M    
Sbjct: 80  SGLISMYSKHDRIKEARFLFDDMPERDDVS--WNSMIAGYSQRGLNEEACGLFCSMINSC 137

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           E   +    FT   VLKAC GLG  R+G+ VH  AV+ GF  D FV  + V MY KCG +
Sbjct: 138 ENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGIL 197

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             A   FD+I NKD++++N+M+TGY  +    EA ++F  M L GF P+      +L  +
Sbjct: 198 DMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKAS 257

Query: 306 SLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           + +    +G   H  VL+ G   D+ +A +L+ +YSK   ++     F  M ++++VS+N
Sbjct: 258 TAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFN 317

Query: 363 SIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I  +S   K  EAL  + Q++ +G+ PD  TFV L S+C+   +V  G ++  V   K
Sbjct: 318 ALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVH-VHSVK 376

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALL 466
           +G+   V     +VN Y + G  D A    +E  E    P  V W  ++
Sbjct: 377 FGLDSDVSVGNSIVNFYSKCGFTDSA----LEAFESINRPNSVCWAGII 421



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 200/393 (50%), Gaps = 18/393 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A++L+ C  L     G  +H          +  +S   + +Y   G++D A   FDQ+
Sbjct: 148 TLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQI 207

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N+   A  WN++I+GYA+    E+AI L++QME EG +P+  TF  VLKA   +    V
Sbjct: 208 ENKDIVA--WNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAV 265

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G   H   ++ G   D FV  ALVDMY+K  DI      F  +  ++L+S+N+++TGY  
Sbjct: 266 GRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSL 325

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G   EA  ++  +   G +PD    V + S  + +S +  GAQVH   ++ G++ D+ +
Sbjct: 326 MGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSV 385

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
            NS++  YSK G  D A   F+ + + + V W  II   +++ E   AL+ F +M +   
Sbjct: 386 GNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFID 445

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA- 445
             D  +  S++ A +   +V+ G  L +  V K G+   +   + ++++Y + G++++A 
Sbjct: 446 KTDEFSSSSVIKAVSSWAAVEQGRHLHA-HVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQ 504

Query: 446 --YSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
             +S++ EK     + V W +++   Y     C
Sbjct: 505 KVFSVMPEK-----NVVSWNSMITG-YAQNGFC 531



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 149/288 (51%), Gaps = 13/288 (4%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W S I+  A  G  + A++ + QM   G+EP+  T+   + ACA      +   +H   +
Sbjct: 9   WTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLIL 68

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + GF    FV + L+ MY+K   I +AR +FD +  +D +S+NSM+ GY   GL  EA  
Sbjct: 69  KKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACG 128

Query: 282 IFRGMILNGFDPDPVAIS-----SILANASLL---RIGAQVHGWVLRRGVEWDLCIANSL 333
           +F  MI N  +   + +S     ++L     L   RIG  VHG+ ++ G + DL ++ S 
Sbjct: 129 LFCSMI-NSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGST 187

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDH 390
           + +Y K G LD A   FD +  KD+V+WN++I  +++   + EA+  F QME +G  P+ 
Sbjct: 188 VYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPND 247

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            TF  +L A   +    VG R F   V K G S  V     +V++Y +
Sbjct: 248 TTFCCVLKASTAMSDSAVG-RCFHAKVLKLGCSMDVFVATALVDMYSK 294



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 15/291 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  L  +C     V  G ++H       L  +  + + ++  Y+  G  D A
Sbjct: 343 GMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSA 402

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F+ ++   +    W  +ISG+A+ GE E A+  + +M +   + D+F+   V+KA +
Sbjct: 403 LEAFESINRPNSVC--WAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVS 460

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G  +H   ++ G     +V +A++DMY+KCG +  A+ VF  +  K+++S+NS
Sbjct: 461 SWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNS 520

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ-----VHGW 317
           M+TGY  +G   EA  +F+ M  +G  P  V    IL   ++A L+  G       VH +
Sbjct: 521 MITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNY 580

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQA-CWLFDHMPQKDVVSWNSIIHA 367
            +   +E   C+ + L     + G L++A  +L      K+   W S++ A
Sbjct: 581 GIPPSMEHCTCMVDLL----GRAGYLEEAEAFLLSSSFSKEPGIWGSLLSA 627


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/471 (30%), Positives = 257/471 (54%), Gaps = 16/471 (3%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ--LKAVEHGIKLHRLIPTNLLRKN 125
           ++ + D +++ L   +++G+ + +    S L+ C      ++E G  LH       L  +
Sbjct: 119 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD 178

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED-----AIA 180
             + + LL  YA  G +++A ++F  M +     +  N++I+G+ ++    D     A+ 
Sbjct: 179 VVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY--NAMIAGFLQMETMADEFANEAMY 236

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           L+F+M+  G++P +FTF  +LKAC+ +     G+++H    ++    D F+ NALV++Y+
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
             G I      F      D++S+ S++ G++ +G       +F  ++ +G  PD   IS 
Sbjct: 297 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 356

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L   AN + ++ G Q+H + ++ G+     I NS I +Y+K G +D A   F      D
Sbjct: 357 MLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPD 416

Query: 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VSW+ +I +   H    EA+  FE M+  G+ P+H+TF+ +L AC+H G V+ G R F 
Sbjct: 417 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 476

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +M + +GI+P V+H AC+V+L GRAG + EA S I++   FE  PV+W +LL AC +H  
Sbjct: 477 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDS-GFEGDPVMWRSLLSACRVHKA 535

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              G+  A+++ ELEP+   ++ LL  IY +AG       +  ++ DRG++
Sbjct: 536 TDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVK 586



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 195/413 (47%), Gaps = 30/413 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF++ L  C +   +  G  +H LI  + L     +++ L+ +Y   G ID A  VF+  
Sbjct: 43  TFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESA 102

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG--LGLI 210
               + +  WNSLI+GY  +G  ++ + L  +M   G+  + +     LKAC       I
Sbjct: 103 DELDSVS--WNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSI 160

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G+ +H  AV+ G   D  V  AL+D YAK GD+  A  +F  + + +++ YN+M+ G+
Sbjct: 161 ECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGF 220

Query: 271 IHHGLLV-----EAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
           +    +      EA  +F  M   G  P     SSIL   S +     G Q+H  + +  
Sbjct: 221 LQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYN 280

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFE 379
           ++ D  I N+L+ +YS  G ++     F   P+ DVVSW S+I  H ++ +    L  F 
Sbjct: 281 LQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFH 340

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           ++   G  PD  T   +LSACA+L +VK GE++ +  + K GI          + +Y + 
Sbjct: 341 ELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAI-KTGIGNFTIIQNSQICMYAKC 399

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFEL 488
           G ID A       M F+ +     V W  ++ +   HG  C  E  A  LFEL
Sbjct: 400 GDIDSA------NMTFKETKNPDIVSWSVMISSNAQHG--CAKE--AVDLFEL 442



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 181/381 (47%), Gaps = 25/381 (6%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WNSLISGY ++G Y + + L+ +     +  D+FTF   L  C     +R+G  +H    
Sbjct: 9   WNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALIT 68

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
             G G    + N+L+DMY KCG I  AR VF+     D +S+NS++ GY+  G   E   
Sbjct: 69  VSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLR 128

Query: 282 IFRGMILNGFDPDPVAISSILAN-----ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
           +   M+ +G + +  A+ S L       +S +  G  +HG  ++ G++ D+ +  +L+  
Sbjct: 129 LLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDT 188

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIH--------AHSKDHEALIYFEQMERDGVLP 388
           Y+K G L+ A  +F  MP  +VV +N++I         A    +EA+  F +M+  G+ P
Sbjct: 189 YAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKP 248

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
              TF S+L AC+ + + + G+++ +  + KY +         +V LY  +G I++    
Sbjct: 249 SEFTFSSILKACSTIEAFECGKQIHA-QIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 307

Query: 449 IVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQK-LFELEPDNEHNFELLIKIY 503
                 F ++P    V W +L+     +G    G T   + LF     +E    +++   
Sbjct: 308 ------FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSAC 361

Query: 504 GNAGRLDDVERVERMLVDRGL 524
            N   +   E++    +  G+
Sbjct: 362 ANLAAVKSGEQIHAYAIKTGI 382



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 12/237 (5%)

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQV 314
           ++++S+NS+++GY   G   E  ++F+   ++    D    S   S+      LR+G  +
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 63

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---D 371
           H  +   G+   + + NSLI +Y K G++D A  +F+   + D VSWNS+I  + +   +
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 123

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAH--LGSVKVGERLFSVMVEKYGISPRVEHY 429
            E L    +M R G+  +     S L AC      S++ G+ L    V K G+   V   
Sbjct: 124 DEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAV-KLGLDLDVVVG 182

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
             +++ Y + G +++A  +   K+  + + V++ A++ A +L       E A + ++
Sbjct: 183 TALLDTYAKIGDLEDATKIF--KLMPDPNVVMYNAMI-AGFLQMETMADEFANEAMY 236



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 353 MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MP+++VVSWNS+I  +++    HE +  F++     +  D  TF + LS C     +++G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            RL   ++   G+   V     ++++Y + G ID  ++ +V +   E   V W +L+
Sbjct: 61  -RLIHALITVSGLGGPVLLTNSLIDMYCKCGRID--WARLVFESADELDSVSWNSLI 114


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 247/440 (56%), Gaps = 14/440 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + S++  C Q K +     +H  +  + L  +  + + L+ +Y   G + +A  VFD+M 
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +R   +  W  LI+GYA+     +AI L   M      P+ FTF  +LKA    G   +G
Sbjct: 123 SRDVVS--WTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG 180

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           E++H  AV++ +  D +V +AL+DMYA+C  +  A  VFDR+ +K+ +S+N+++ G+   
Sbjct: 181 EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARK 240

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDLC 328
                    F  M  NGF       SS+   ++  RIGA      VH  +++ G +    
Sbjct: 241 ADGETTLMKFAEMQRNGFGATHFTYSSMF--SAFARIGALEQGRWVHAHLIKSGQKLTAF 298

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDG 385
           + N+++ +Y+K G +  A  +FD M ++D+V+WN+++ A ++     EA+ +FE++ + G
Sbjct: 299 VGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG 358

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  + +TF+S+L+AC+H G VK G+  F  M++ Y + P ++HY   V+L GRAGL+ EA
Sbjct: 359 IQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKEA 417

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             + V KM  E +  VWGALL AC +H N  MG+ AA  +FEL+PD+     LL  IY +
Sbjct: 418 L-IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYAS 476

Query: 506 AGRLDDVERVERMLVDRGLE 525
            G+ +D  RV +M+   G++
Sbjct: 477 TGKWNDAARVRKMMKATGVK 496



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 149/290 (51%), Gaps = 9/290 (3%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           + P    +  ++ ACA    +     +H    R     D F+LN+L+ MY KCG +  AR
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL-- 307
            VFD++ ++D++S+  ++ GY  + +  EA  +   M+   F P+    +S+L       
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175

Query: 308 -LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
              IG Q+H   ++   + D+ + ++L+ +Y++  ++D A  +FD +  K+ VSWN++I 
Sbjct: 176 GCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIA 235

Query: 367 AHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
             ++  +    L+ F +M+R+G    H T+ S+ SA A +G+++ G  + + ++ K G  
Sbjct: 236 GFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLI-KSGQK 294

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
                   M+ +Y ++G + +A   + ++M+ +   V W  +L A   +G
Sbjct: 295 LTAFVGNTMLGMYAKSGSMVDARK-VFDRMD-KRDLVTWNTMLTALAQYG 342



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+          G ++H L       ++  + S LL +YA    +D A  VFD++
Sbjct: 163 TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++   +  WN+LI+G+A   + E  +  + +M+  G     FT+  +  A A +G +  
Sbjct: 223 VSKNEVS--WNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQ 280

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH   ++ G     FV N ++ MYAK G +V AR VFDR+  +DL+++N+MLT    
Sbjct: 281 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 340

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           +GL  EA   F  +   G   + +   S+L   S        HG +++ G  +       
Sbjct: 341 YGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS--------HGGLVKEGKHY-----FD 387

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392
           ++  Y+   ++D      D + +  ++             EALI+  +M  +   P    
Sbjct: 388 MMKDYNVQPEIDHYVSFVDLLGRAGLLK------------EALIFVFKMPME---PTAAV 432

Query: 393 FVSLLSACAHLGSVKVGE 410
           + +LL AC    + K+G+
Sbjct: 433 WGALLGACRMHKNAKMGQ 450



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG      T++S+     ++ A+E G  +H  +  +  +    + + +L +YA  G + 
Sbjct: 255 RNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMV 314

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VFD+M  R      WN++++  A+ G  ++A+A + ++ + G++ +Q TF  VL A
Sbjct: 315 DARKVFDRMDKRDLVT--WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 372

Query: 204 CAGLGLIRVGE 214
           C+  GL++ G+
Sbjct: 373 CSHGGLVKEGK 383


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 135/395 (34%), Positives = 229/395 (57%), Gaps = 9/395 (2%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G +  A +VF  + ++T  +  WN+LI GYA+  +   ++  + QM+  G+ PD F
Sbjct: 424 YAKCGSLSYAQRVFHGIRSKTLNS--WNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNF 481

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   +L AC+ L  +R+G++VH   +R     D FV  +++ +Y  CG++   + +FD +
Sbjct: 482 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAM 541

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGA 312
            +  L+S+N+++TG++ +G    A  +FR M+L G  P  +++ ++    SL   LR+G 
Sbjct: 542 EDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGR 601

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           + H + L+  +E +  IA S+I +Y+K+G + Q+  +F+ + +K   SWN++I     H 
Sbjct: 602 EAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHG 661

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           +  EA+  FE+M+R G  PD LTF+ +L+AC H G +  G R    M   +G+ P ++HY
Sbjct: 662 RAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHY 721

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           AC++++ GRAG +D A  +  E M  E    +W +LL  C +H N+ MGE  A KLF LE
Sbjct: 722 ACVIDMLGRAGQLDNALRVAAE-MSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLE 780

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           P+   N+ LL  +Y   G+ DDV +V + + +  L
Sbjct: 781 PEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSL 815



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 213/437 (48%), Gaps = 26/437 (5%)

Query: 64  FPKTKLQALDSIIQDLESSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLL 122
            P+  L + +S+I+    +  +G  +    T  ++L  C + + +  G  +H       L
Sbjct: 248 MPERNLVSWNSMIRVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSL 307

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
            K   +++ L+ +Y+ +G I ++  +F   +N+   +  WN+++ G++  G+      L 
Sbjct: 308 DKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVS--WNTMVGGFSAEGDIHGTFDLL 365

Query: 183 FQM--EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
            QM    E V+ D+ T    +  C    ++   +++H  +++  F +D  + NA V  YA
Sbjct: 366 RQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYA 425

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG +  A+ VF  I +K L S+N+++ GY        + D    M  +G  PD   + S
Sbjct: 426 KCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCS 485

Query: 301 ILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L+  S    LR+G +VHG+++R  +E DL +  S++ +Y   G+L     LFD M    
Sbjct: 486 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNS 545

Query: 358 VVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VSWN++I  H ++     AL  F QM   G+ P  ++ +++  AC+ L S+++G     
Sbjct: 546 LVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGRE--- 602

Query: 415 VMVEKYGISPRVEH---YAC-MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
                Y +   +E     AC ++++Y + G I ++ S +   ++ E S   W A++    
Sbjct: 603 --AHAYALKHLLEDNAFIACSIIDMYAKNGAITQS-SKVFNGLK-EKSAASWNAMIMGYG 658

Query: 471 LHGNVCMGETAAQKLFE 487
           +HG        A KLFE
Sbjct: 659 MHGRA----KEAIKLFE 671



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 190/391 (48%), Gaps = 34/391 (8%)

Query: 25  KRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKT-----KLQALDSIIQDL 79
           +RSRK+    +   + N I++ S+    +    L     F +T       + +     D 
Sbjct: 18  RRSRKESSFPRADYNSNAISSNST----NANHFLRRISNFCETGDLDKSFRVVQEFAGDD 73

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP-TNLLRKNKGISSKLLRLYAT 138
           ESS    + V+ E    LL+   + K +E G K+H L+  +  LR +  + ++++ +YA 
Sbjct: 74  ESSSDVFLLVR-EALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAM 132

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTF 197
            G  D++   FD +  R+   F WN++IS Y+    Y + + ++ +M  +  + PD FTF
Sbjct: 133 CGSPDDSRSAFDAL--RSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTF 190

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           P V+KACAG+  + +G  VH   V+ G   D FV NALV  Y   G +  A  +FD +  
Sbjct: 191 PCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPE 250

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV 314
           ++L+S+NSM+  +  +G                F PD   + ++L   A    + +G  V
Sbjct: 251 RNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLPVCAREREIGVGKGV 298

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--- 371
           HGW ++  ++ +L + N+L+ +YSK G +  +  +F     K+VVSWN+++   S +   
Sbjct: 299 HGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDI 358

Query: 372 HEALIYFEQM--ERDGVLPDHLTFVSLLSAC 400
           H       QM    + V  D +T ++ +  C
Sbjct: 359 HGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL-IYFEQM 381
           D  +   +I +Y+  G  D +   FD +  K++  WN++I ++S++   HE L ++ + +
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMI 178

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            +  +LPD+ TF  ++ ACA +  V +G  +  ++V K G+   +     +V+ YG  G 
Sbjct: 179 SKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVV-KTGLVEDLFVGNALVSFYGTHGF 237

Query: 442 IDEAYSMIVEKMEFEASPVVWGALL 466
           + +A  +    +  E + V W +++
Sbjct: 238 VSDALKLF--DIMPERNLVSWNSMI 260


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 240/445 (53%), Gaps = 10/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  + + T  S+L  C +L  +  G  +H             +++ LL +Y+        
Sbjct: 292 GEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRST 351

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           +++F  M  +   +  W ++I+ Y   G Y+    L+ +M  EG  PD F     L A A
Sbjct: 352 NKIFRNMVQKNVVS--WTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFA 409

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G  L++ G+ VH  A+R G      V NAL++MY KCG++ +A+ +FD + +KD+IS+N+
Sbjct: 410 GNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNT 469

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ GY  + L  EAF +F  M+L    P+ V ++ IL   A+ S L  G ++H + LRRG
Sbjct: 470 LIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRG 528

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D  +AN+LI +Y K G L  A  LFD +  K+++SW  ++     H +  +A+  FE
Sbjct: 529 YLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFE 588

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM   G+ PD  +F ++L AC+H G    G R F  M +++ I PR++HY CMV+L    
Sbjct: 589 QMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINT 648

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EAY  I + M  E    +W +LL  C +H NV + E  A+++FELEP+N   + LL
Sbjct: 649 GNLKEAYEFI-DSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLL 707

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A R + V +++  +  RGL
Sbjct: 708 ANIYAEAERWEAVRKLKNKIGGRGL 732



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 179/340 (52%), Gaps = 9/340 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T + +L+    L ++E G  +H L+          + + L+  YA      +A
Sbjct: 191 GVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDA 250

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD M +R   +  WNS+ISG    G Y+ AI L+ +M  EG E D  T   VL ACA
Sbjct: 251 ILVFDGMPHRDVIS--WNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACA 308

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L L+ +G  VH  +V+ GF     + N L+DMY+ C D      +F  +  K+++S+ +
Sbjct: 309 ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTA 368

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M+T Y   GL  +   +F+ M L G  PD  AI+S L   A   LL+ G  VHG+ +R G
Sbjct: 369 MITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNG 428

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           +E  L + N+L+ +Y K G +++A  +FD +  KD++SWN++I  +S++   +EA   F 
Sbjct: 429 MEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFT 488

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +M    + P+ +T   +L A A L S++ G  + +  + +
Sbjct: 489 EMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRR 527



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 195/369 (52%), Gaps = 17/369 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN---KGISSKLLRLYATFGLIDEA 145
           V   ++ ++L+ C +++++E G + H L+  + L ++     +  KL+ +Y   G ++ A
Sbjct: 89  VDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENA 148

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD+M   +     W +L+SGYA+ G+  + + L+ +M   GV PD +T   VLK  A
Sbjct: 149 RRVFDEMPQVSDVRV-WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIA 207

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GLG I  GE VH    + GFG    V NAL+  YAK      A  VFD + ++D+IS+NS
Sbjct: 208 GLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNS 267

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M++G   +GL  +A ++F  M L G + D   + S+L   A   LL +G  VHG+ ++ G
Sbjct: 268 MISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTG 327

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY----- 377
                 +AN L+ +YS          +F +M QK+VVSW ++I ++++   A +Y     
Sbjct: 328 FISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTR---AGLYDKVAG 384

Query: 378 -FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M  +G  PD     S L A A    +K G+ +    + + G+   +     ++ +Y
Sbjct: 385 LFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAI-RNGMEKVLAVTNALMEMY 443

Query: 437 GRAGLIDEA 445
            + G ++EA
Sbjct: 444 VKCGNMEEA 452


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/483 (32%), Positives = 258/483 (53%), Gaps = 45/483 (9%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+     T+  + +    L  V    KL  L+    L  +  + + L+ +YA   L D
Sbjct: 130 EDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTD 189

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLK 202
               +FD+M +R   +  WN +ISGY +   +EDAI ++ +M+EE G+ PD+ T    L 
Sbjct: 190 VMKMLFDEMPDRDVIS--WNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLS 247

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  L  + +G+K+H   VR    F   + NAL+DMY KCG +  AR VF+ + +K++I 
Sbjct: 248 ACTALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVIC 306

Query: 263 YNSMLTGYIHHGLLVEAFDIFRG----------MILNGF--------------------- 291
           + +M++GY + G L EA ++F G           ++NG+                     
Sbjct: 307 WTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKV 366

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   + S+L   A    +  G  +H ++    +  D  +  +LI +Y+K G +++A  
Sbjct: 367 KPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALE 426

Query: 349 LFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F  +  KD  SW SII     + K  +AL  F +M++ GV PD +TF+ +LSAC+H G 
Sbjct: 427 IFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGL 486

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV---VW 462
           V+ G + F+ M  +Y I P+VEHY C+V+L GRAGL++EA  +I +K+  E   +   ++
Sbjct: 487 VEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELI-KKIPDENKAITVPLY 545

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           G+LL AC ++GNV MGE  A++L + E  +     LL  IY  A R +DV +V R + D 
Sbjct: 546 GSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDL 605

Query: 523 GLE 525
           G++
Sbjct: 606 GVK 608



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 161/322 (50%), Gaps = 40/322 (12%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           +N +I  +A+ G Y+  + L+ ++ E+G+ PD FT+P V KA   LG +   EK+     
Sbjct: 105 YNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVT 164

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G  FD +V N+L+DMYA+       + +FD + ++D+IS+N M++GY+      +A +
Sbjct: 165 KTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAIN 224

Query: 282 IF-RGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           +F R    +G  PD   + S L+  + L+   +G ++H +V R  V++   I N+L+ +Y
Sbjct: 225 VFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYV-RDNVKFTPIIGNALLDMY 283

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---------------------------- 369
            K G L  A  +F+ MP K+V+ W +++  ++                            
Sbjct: 284 CKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMIN 343

Query: 370 ------KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
                 +  EA+  F +M+   V PD    VSLL+ CA  G+++ G+ +   + E     
Sbjct: 344 GYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPI 403

Query: 424 PRVEHYACMVNLYGRAGLIDEA 445
             V   A ++ +Y + G I++A
Sbjct: 404 DAVVGTA-LIEMYAKCGFIEKA 424



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSK--DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           Q+H  + R G+  D+   N L+   +   +G L+ A  +F ++    ++ +N II A +K
Sbjct: 55  QIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAK 114

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                  L+ F ++  DG+ PD+ T+  +  A  +LG V   E+L   +V K G+     
Sbjct: 115 KGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRG-LVTKTGLEFDTY 173

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL 466
               ++++Y +  L D      V KM F+  P    + W  ++
Sbjct: 174 VRNSLIDMYAQLALTD------VMKMLFDEMPDRDVISWNVMI 210


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 229/391 (58%), Gaps = 9/391 (2%)

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            I EA Q+FD M  + + +  W ++I+G  + G +++A+  + +M  EG   DQFTF  V
Sbjct: 219 FIVEAEQLFDNMPEKDSIS--WTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSV 276

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L AC G   +  G+++H   +R  +  + FV +AL+DMY KC ++  A  VF ++ +K++
Sbjct: 277 LTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNV 336

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           IS+ +ML GY  +G   EA  IF  M  N   PD   + S++   AN + L  GAQ HG 
Sbjct: 337 ISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQ 396

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEA 374
            L  G+   + ++N+LI +Y K G L+ A  LF  M  +D VSW +++  ++   K +E 
Sbjct: 397 ALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANET 456

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  FE M   G++PD +TFV +LSAC+  G V+ G   F  MV+++ I+P  +HY CM++
Sbjct: 457 ISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMID 516

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L  RAG ++EA + I  +M F    + W  LL +C L+GN+ +G+ AA+ L +LEP N  
Sbjct: 517 LLSRAGRLEEAKNFI-NQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPA 575

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ++ LL  IY   G+ DDV ++ + + + G++
Sbjct: 576 SYILLSSIYAAKGKWDDVAKLRKGMREMGVK 606



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 203/417 (48%), Gaps = 51/417 (12%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +T  + +L+ T  +L  +++   +   IP  NL   N      LL  Y+  G + +  +V
Sbjct: 39  ETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNT-----LLSAYSKLGYLQDMQRV 93

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGL 207
           FD M N    +  WNSL+SGYA  G   +++ +Y  M ++G V  ++ TF  +L   +  
Sbjct: 94  FDSMPNHDVVS--WNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNR 151

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK-------------------------- 241
           G + +G ++H    +FG+    FV + LVDMYAK                          
Sbjct: 152 GFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMI 211

Query: 242 -----CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
                C  IV+A  +FD +  KD IS+ +++TG   +GL  EA D F+ M + GF  D  
Sbjct: 212 TGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQF 271

Query: 297 AISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
              S+L        L  G Q+H +++R   + ++ + ++L+ +Y K   +  A  +F  M
Sbjct: 272 TFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKM 331

Query: 354 PQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
             K+V+SW +++  + ++    EA+  F  M+R+ + PD  T  S++S+CA+L S++ G 
Sbjct: 332 RHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGA 391

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE-KMEFEASPVVWGALL 466
           + F       G+   V     ++ LYG+ G ++ A+ +  E K+  E S   W AL+
Sbjct: 392 Q-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS---WTALV 444



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 23/295 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  +   TF S+L  C    A++ G ++H  I     + N  + S LL +Y     +  A
Sbjct: 265 GFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF +M ++   +  W +++ GY + G  E+A+ ++  M+   + PD FT   V+ +CA
Sbjct: 325 EAVFRKMRHKNVIS--WTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCA 382

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  +  G + H  A+  G      V NAL+ +Y KCG +  A  +F  +  +D +S+ +
Sbjct: 383 NLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTA 442

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           +++GY   G   E   +F  M+ +G  PD V    +L+  S  R G      ++ +G  +
Sbjct: 443 LVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACS--RAG------LVEKGYHY 494

Query: 326 DLCIA------------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             C+               +I + S+ G+L++A    + MP   D + W +++ +
Sbjct: 495 FECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSS 549



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 7/134 (5%)

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
           ++H  ++R     +  + N+LI  Y K G L  A  +FDH+PQ ++ SWN+++ A+SK  
Sbjct: 26  KLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSK-- 83

Query: 373 EALIYFEQMERD-GVLPDH--LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
             L Y + M+R    +P+H  +++ SLLS  A  G +    R++++M++   ++     +
Sbjct: 84  --LGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITF 141

Query: 430 ACMVNLYGRAGLID 443
           + M+ L    G +D
Sbjct: 142 STMLILSSNRGFVD 155


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 234/446 (52%), Gaps = 24/446 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL----------LRLYATF 139
              T  +LL    Q  A+  G  +H       L  N+   SKL          L +YA  
Sbjct: 227 NASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKC 286

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFT 196
           G +  A +VFD M  R      W++LI G+        A  L+  M  +G+    P   +
Sbjct: 287 GSLLYARRVFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--S 342

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
               L+ACA L  +R+GE++H    + G   D    N+L+ MYAK G I +A  +FD + 
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 402

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
            KD +SY+++++GY+ +G   EAF +F+ M     +PD   + S++   S    L+ G  
Sbjct: 403 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 462

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
            HG V+ RG+  +  I N+LI +Y+K G++D +  +F+ MP +D+VSWN++I     H  
Sbjct: 463 SHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGL 522

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EA   F +M   G  PD +TF+ LLSAC+H G V  G+  F VM   YG++PR+EHY 
Sbjct: 523 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI 582

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L  R G +DEAY  I + M   A   VW ALL AC ++ N+ +G+  ++ + EL P
Sbjct: 583 CMVDLLSRGGFLDEAYEFI-QSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 641

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVE 516
           +   NF LL  IY  AGR D+   V 
Sbjct: 642 EGTGNFVLLSNIYSAAGRFDEAAEVR 667



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 194/438 (44%), Gaps = 58/438 (13%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE--DAIALYFQMEEEGVEPDQFTF 197
           G +  AH +FDQ+ +     +  N LI  Y+        D + LY +M    V P+ +TF
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTY--NDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           P  LKAC+ L     G  +H  A+  G   D FV  AL+DMY KC  +  A  +F  +  
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGA 312
           +DL+++N+ML GY HHG+   A      M +      P     VA+  +LA    L  G 
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 313 QVHGWVLRRGVEWD----------LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
            VH + +R  +  +          + +  +L+ +Y+K G L  A  +FD MP ++ V+W+
Sbjct: 249 SVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 363 SIIHAH---SKDHEALIYFEQMERDGV-LPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           ++I      S+  +A + F+ M   G+      +  S L ACA L  +++GE+L +++  
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLA- 367

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE---KMEFEASPVVWGAL-------LYA 468
           K G+   +     ++++Y +AGLID+A ++  E   K     S +V G +        + 
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFEL------------------------LIKIYG 504
            +     C  E  A  +  L P   H   L                        LI +Y 
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 487

Query: 505 NAGRLDDVERVERMLVDR 522
             GR+D   +V  M+  R
Sbjct: 488 KCGRIDLSRQVFNMMPSR 505


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 228/392 (58%), Gaps = 10/392 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G+I++A Q+F  M   +     W+++I G A+ G  ++AI  + +M+ EG++ DQ+ F  
Sbjct: 216 GMIEDALQLFRGMEKDSV---SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGS 272

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL AC GLG I  G ++H   +R       +V +AL+DMY KC  +  A+TVFDR+  K+
Sbjct: 273 VLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN 332

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHG 316
           ++S+ +M+ GY   G   EA  IF  M  +G DPD   +    S  AN S L  G+Q HG
Sbjct: 333 VVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHG 392

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHE 373
             +  G+   + ++NSL+ +Y K G +D +  LF+ M  +D VSW +++ A++   +  E
Sbjct: 393 KAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVE 452

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  F++M + G+ PD +T   ++SAC+  G V+ G+R F +M+ +YGI P   HY+CM+
Sbjct: 453 AIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMI 512

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L+ R+G I+EA   I   M F    + W  LL AC   GN+ +G+ AA+ L EL+P + 
Sbjct: 513 DLFSRSGRIEEAMGFI-NGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHP 571

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + LL  IY + G+ D V ++ R + ++ + 
Sbjct: 572 AGYTLLSSIYASKGKWDCVAQLRRGMKEKNVR 603



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 148/290 (51%), Gaps = 13/290 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +    F S+L  C  L A+  G ++H  I    L+ +  + S L+ +Y     +  A
Sbjct: 262 GLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYA 321

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD+M  +   +  W +++ GY + G   +A+ ++  M+  G++PD +T  + + ACA
Sbjct: 322 KTVFDRMKQKNVVS--WTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACA 379

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +  +  G + H  A+  G      V N+LV +Y KCGDI  +  +F+ +  +D +S+ +
Sbjct: 380 NISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTA 439

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M++ Y   G  VEA  +F  M+  G  PD V ++ ++   + A L+  G +    ++   
Sbjct: 440 MVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMIN-- 497

Query: 323 VEWDLCIANS----LIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
            E+ +  +N     +I ++S+ G++++A    + MP + D + W +++ A
Sbjct: 498 -EYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA 546



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 176/376 (46%), Gaps = 42/376 (11%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE- 188
           + LL  Y+  G + E  + F+++ +R      WN LI GY+  G    A+  Y  M ++ 
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDRDGVT--WNVLIEGYSLSGLVGAAVKAYNTMMKDF 130

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
                + T   +LK  +  G + +G+++H   ++ GF     V + L+DMY+K G I  A
Sbjct: 131 SSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDA 190

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG----------------------- 285
           + VF  + +++ + YN+++ G +  G++ +A  +FRG                       
Sbjct: 191 KKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKE 250

Query: 286 -------MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
                  M + G   D     S+L        +  G Q+H  ++R  ++  + + ++LI 
Sbjct: 251 AIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALID 310

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLT 392
           +Y K   L  A  +FD M QK+VVSW +++  +    +  EA+  F  M+R G+ PDH T
Sbjct: 311 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYT 370

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
               +SACA++ S++ G +     +   G+   +     +V LYG+ G ID++  +  E 
Sbjct: 371 LGQAISACANISSLEEGSQFHGKAITA-GLIHYITVSNSLVTLYGKCGDIDDSTRLFNE- 428

Query: 453 MEFEASPVVWGALLYA 468
           M      V W A++ A
Sbjct: 429 MNVR-DEVSWTAMVSA 443



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 129/317 (40%), Gaps = 63/317 (19%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     T    +  C  + ++E G + H    T  L     +S+ L+ LY   G ID
Sbjct: 361 RSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDID 420

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           ++ ++F++M+ R   +  W +++S YA+ G   +AI L+ +M + G++PD          
Sbjct: 421 DSTRLFNEMNVRDEVS--WTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPD---------- 468

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI-- 261
                                    G  L  ++   ++ G + K +  F+ + N+  I  
Sbjct: 469 -------------------------GVTLTGVISACSRAGLVEKGQRYFELMINEYGIVP 503

Query: 262 ---SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVH 315
               Y+ M+  +   G + EA     GM    F PD +  +++L+   N   L IG    
Sbjct: 504 SNGHYSCMIDLFSRSGRIEEAMGFINGM---PFRPDAIGWTTLLSACRNKGNLEIGK--- 557

Query: 316 GWVLRRGVEWDL---CIANSLIVVYSKDGKLDQACWLFDHMPQKDV--------VSWNSI 364
            W     +E D         L  +Y+  GK D    L   M +K+V        + W   
Sbjct: 558 -WAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGK 616

Query: 365 IHAHSKDHEALIYFEQM 381
           +H+ S D E+  Y +Q+
Sbjct: 617 LHSFSADDESSPYSDQI 633



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 147/335 (43%), Gaps = 73/335 (21%)

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           +K C GLG  R  + +H + +R     + F+ N +V  YA     + AR VFD I   +L
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFR----------GMILNGFDPDPVAISSILANASLLR- 309
            S+N++L  Y   G L E    F            +++ G+    +  +++ A  ++++ 
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD 129

Query: 310 ------------------------IGAQVHGWVLRRGVEWDLCIANSLIVVYSK------ 339
                                   +G Q+HG V++ G E  L + + L+ +YSK      
Sbjct: 130 FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISD 189

Query: 340 -------------------------DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--- 371
                                     G ++ A  LF  M +KD VSW+++I   +++   
Sbjct: 190 AKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGME 248

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EA+  F +M+ +G+  D   F S+L AC  LG++  G ++ + ++ +  +   +   + 
Sbjct: 249 KEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACII-RTNLQDHIYVGSA 307

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           ++++Y +   +  A + + ++M+ + + V W A++
Sbjct: 308 LIDMYCKCKCLHYAKT-VFDRMK-QKNVVSWTAMV 340


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 234/446 (52%), Gaps = 24/446 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL----------LRLYATF 139
              T  +LL    Q  A+  G  +H       L  N+   SKL          L +YA  
Sbjct: 112 NASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKC 171

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFT 196
           G +  A +VFD M  R      W++LI G+        A  L+  M  +G+    P   +
Sbjct: 172 GSLLYARRVFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--S 227

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
               L+ACA L  +R+GE++H    + G   D    N+L+ MYAK G I +A  +FD + 
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 287

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
            KD +SY+++++GY+ +G   EAF +F+ M     +PD   + S++   S    L+ G  
Sbjct: 288 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 347

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
            HG V+ RG+  +  I N+LI +Y+K G++D +  +F+ MP +D+VSWN++I     H  
Sbjct: 348 SHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGL 407

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EA   F +M   G  PD +TF+ LLSAC+H G V  G+  F VM   YG++PR+EHY 
Sbjct: 408 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI 467

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L  R G +DEAY  I + M   A   VW ALL AC ++ N+ +G+  ++ + EL P
Sbjct: 468 CMVDLLSRGGFLDEAYEFI-QSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 526

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVE 516
           +   NF LL  IY  AGR D+   V 
Sbjct: 527 EGTGNFVLLSNIYSAAGRFDEAAEVR 552



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 220/439 (50%), Gaps = 33/439 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF   L+ C  L     G  +HR      L+ +  +S+ LL +Y     + +A  +F  M
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 71

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIA--LYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
             R   A  WN++++GYA  G Y  A+A  L  QM+   + P+  T   +L   A  G +
Sbjct: 72  PARDLVA--WNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGAL 129

Query: 211 RVGEKVHLDAVRFGFG---------FDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDL 260
             G  VH   +R              DG +L  AL+DMYAKCG ++ AR VFD +  ++ 
Sbjct: 130 AQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 189

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSILANASL--LRIGAQVH 315
           +++++++ G++    + +AF +F+ M+  G     P  +A S++ A ASL  LR+G Q+H
Sbjct: 190 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA-SALRACASLDHLRMGEQLH 248

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
             + + GV  DL   NSL+ +Y+K G +DQA  LFD M  KD VS+++++  + ++    
Sbjct: 249 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 308

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA + F++M+   V PD  T VSL+ AC+HL +++ G      ++ + G++        +
Sbjct: 309 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNAL 367

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE--- 489
           +++Y + G ID   S  V  M      V W  ++    +HG   +G+ A     E+    
Sbjct: 368 IDMYAKCGRID--LSRQVFNMMPSRDIVSWNTMIAGYGIHG---LGKEATALFLEMNNLG 422

Query: 490 -PDNEHNFELLIKIYGNAG 507
            P +   F  L+    ++G
Sbjct: 423 FPPDGVTFICLLSACSHSG 441



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 173/391 (44%), Gaps = 54/391 (13%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M    V P+ +TFP  LKAC+ L     G  +H  A+  G   D FV  AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAIS 299
           +  A  +F  +  +DL+++N+ML GY HHG+   A      M +      P     VA+ 
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWD----------LCIANSLIVVYSKDGKLDQACWL 349
            +LA    L  G  VH + +R  +  +          + +  +L+ +Y+K G L  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 350 FDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV-LPDHLTFVSLLSACAHLGS 405
           FD MP ++ V+W+++I      S+  +A + F+ M   G+      +  S L ACA L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE---KMEFEASPVVW 462
           +++GE+L +++  K G+   +     ++++Y +AGLID+A ++  E   K     S +V 
Sbjct: 241 LRMGEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 463 GAL-------LYACYLHGNVCMGETAAQKLFELEPDNEHNFEL----------------- 498
           G +        +  +     C  E  A  +  L P   H   L                 
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 499 -------LIKIYGNAGRLDDVERVERMLVDR 522
                  LI +Y   GR+D   +V  M+  R
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 234/446 (52%), Gaps = 24/446 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL----------LRLYATF 139
              T  +LL    Q  A+  G  +H       L  N+   SKL          L +YA  
Sbjct: 227 NASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKC 286

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFT 196
           G +  A +VFD M  R      W++LI G+        A  L+  M  +G+    P   +
Sbjct: 287 GSLLYARRVFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--S 342

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
               L+ACA L  +R+GE++H    + G   D    N+L+ MYAK G I +A  +FD + 
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 402

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
            KD +SY+++++GY+ +G   EAF +F+ M     +PD   + S++   S    L+ G  
Sbjct: 403 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 462

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
            HG V+ RG+  +  I N+LI +Y+K G++D +  +F+ MP +D+VSWN++I     H  
Sbjct: 463 SHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGL 522

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EA   F +M   G  PD +TF+ LLSAC+H G V  G+  F VM   YG++PR+EHY 
Sbjct: 523 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYI 582

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L  R G +DEAY  I + M   A   VW ALL AC ++ N+ +G+  ++ + EL P
Sbjct: 583 CMVDLLSRGGFLDEAYEFI-QSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 641

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVE 516
           +   NF LL  IY  AGR D+   V 
Sbjct: 642 EGTGNFVLLSNIYSAAGRFDEAAEVR 667



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 194/438 (44%), Gaps = 58/438 (13%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE--DAIALYFQMEEEGVEPDQFTF 197
           G +  AH +FDQ+ +     +  N LI  Y+        D + LY +M    V P+ +TF
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTY--NDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           P  LKAC+ L     G  +H  A+  G   D FV  AL+DMY KC  +  A  +F  +  
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAISSILANASLLRIGA 312
           +DL+++N+ML GY HHG+   A      M +      P     VA+  +LA    L  G 
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 313 QVHGWVLRRGVEWD----------LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
            VH + +R  +  +          + +  +L+ +Y+K G L  A  +FD MP ++ V+W+
Sbjct: 249 SVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 363 SIIHAH---SKDHEALIYFEQMERDGV-LPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           ++I      S+  +A + F+ M   G+      +  S L ACA L  +++GE+L +++  
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLA- 367

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE---KMEFEASPVVWGAL-------LYA 468
           K G+   +     ++++Y +AGLID+A ++  E   K     S +V G +        + 
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFEL------------------------LIKIYG 504
            +     C  E  A  +  L P   H   L                        LI +Y 
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 487

Query: 505 NAGRLDDVERVERMLVDR 522
             GR+D   +V  M+  R
Sbjct: 488 KCGRIDLSRQVFNMMPSR 505


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 239/447 (53%), Gaps = 10/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G    + T+ SLL T     A E   ++H+      L  +  + S  + +Y   G ID
Sbjct: 328 QEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSID 387

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  +FD+++ R      WN++I G A+     +A++L+ QM  EG  PD  TF  +L A
Sbjct: 388 DAQLIFDKLAVRNVTT--WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
             G   +   ++VH  A+  G   D  V NALV MYAKCG+ + A+ VFD +  +++ ++
Sbjct: 446 NVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTW 504

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
             M++G   HG   EAF +F  M+  G  PD     SIL   A+   L    +VH   + 
Sbjct: 505 TVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVN 564

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G+  DL + N+L+ +Y+K G +D A  +FD M ++DV SW  +I     H +  +AL  
Sbjct: 565 AGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDL 624

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M+ +G  P+  +FV++LSAC+H G V  G R F  + + YGI P +EHY CMV+L G
Sbjct: 625 FVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLG 684

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG ++EA   I+  M  E     WGALL AC  +GN+ M E AA++  +L+P +   + 
Sbjct: 685 RAGQLEEAKHFIL-NMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYV 743

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  IY   G  +    V  M+  RG+
Sbjct: 744 LLSNIYAATGNWEQKLLVRSMMQRRGI 770



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 202/382 (52%), Gaps = 13/382 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+ C    +++ G K+H  I  +  + +  + + L+ +Y   G ID+A  +FD+M
Sbjct: 32  TYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKM 91

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W  +I G A  G  ++A   + QM+ EG  P+ +T+  +L A A  G +  
Sbjct: 92  VERNVIS--WTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH  AV  G   D  V NALV MYAK G I  AR VFD +  +D+ S+  M+ G   
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDL 327
           HG   EAF +F  M   G  P+     SIL  +++   GA     +VH    + G   DL
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            + N+LI +Y+K G +D A  +FD M  +DV+SWN++I   +++   HEA   F +M+++
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G +PD  T++SLL+     G+ +  + +    VE  G+   +   +  V++Y R G ID+
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE-VGLVSDLRVGSAFVHMYIRCGSIDD 388

Query: 445 AYSMIVEKMEFEASPVVWGALL 466
           A  +I +K+    +   W A++
Sbjct: 389 A-QLIFDKLAVR-NVTTWNAMI 408



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 224/454 (49%), Gaps = 23/454 (5%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G    + T+ S+L       A+E   ++H       L  +  + + L+ +YA  G ID
Sbjct: 124 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 183

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VFD M  R  F+  W  +I G A+ G  ++A +L+ QME  G  P+  T+  +L A
Sbjct: 184 DARVVFDGMVERDIFS--WTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241

Query: 204 CA--GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A    G +   ++VH  A + GF  D  V NAL+ MYAKCG I  AR VFD + ++D+I
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVI 301

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-----QVHG 316
           S+N+M+ G   +G   EAF IF  M   GF PD     S+L   + +  GA     +VH 
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL--NTHVSTGAWEWVKEVHK 359

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
             +  G+  DL + ++ + +Y + G +D A  +FD +  ++V +WN++I   ++     E
Sbjct: 360 HAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGRE 419

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F QM R+G  PD  TFV++LSA     +++  + + S  ++   +  RV +   +V
Sbjct: 420 ALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGN--ALV 477

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA---QKLFELEP 490
           ++Y + G  +  Y+  V     E +   W  ++     HG  C  E  +   Q L E   
Sbjct: 478 HMYAKCG--NTMYAKQVFDDMVERNVTTWTVMISGLAQHG--CGHEAFSLFLQMLREGIV 533

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +   +  ++    + G L+ V+ V    V+ GL
Sbjct: 534 PDATTYVSILSACASTGALEWVKEVHSHAVNAGL 567



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 195/373 (52%), Gaps = 20/373 (5%)

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I GYAE G  EDA+ +Y QM  EG +P++ T+  +LKAC     ++ G+K+H   ++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F  D  V  ALV+MY KCG I  A+ +FD++  +++IS+  M+ G  H+G   EAF  F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M   GF P+     SIL   A+A  L    +VH   +  G+  DL + N+L+ +Y+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            +D A  +FD M ++D+ SW  +I     H +  EA   F QMER G LP+  T++S+L+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 399 ACAHLGSVKVGERLFSV--MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           A A + S    E +  V     K G    +     ++++Y + G ID+A  ++ + M  +
Sbjct: 241 ASA-ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA-RLVFDGM-CD 297

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELE-----PDNEHNFELLIKIYGNAGRLDD 511
              + W A++    L  N C G  A     +++     PD+     LL   + + G  + 
Sbjct: 298 RDVISWNAMIGG--LAQNGC-GHEAFTIFLKMQQEGFVPDSTTYLSLL-NTHVSTGAWEW 353

Query: 512 VERVERMLVDRGL 524
           V+ V +  V+ GL
Sbjct: 354 VKEVHKHAVEVGL 366



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 200/395 (50%), Gaps = 15/395 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ +YA  G ID+A  VFD M +R   +  WN++I G A+ G   +A  ++ +M++
Sbjct: 271 VGNALIHMYAKCGSIDDARLVFDGMCDRDVIS--WNAMIGGLAQNGCGHEAFTIFLKMQQ 328

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG  PD  T+  +L      G     ++VH  AV  G   D  V +A V MY +CG I  
Sbjct: 329 EGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDD 388

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---N 304
           A+ +FD++  +++ ++N+M+ G        EA  +F  M   GF PD     +IL+    
Sbjct: 389 AQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVG 448

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L    +VH + +  G+  DL + N+L+ +Y+K G    A  +FD M +++V +W  +
Sbjct: 449 EEALEWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVM 507

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H   HEA   F QM R+G++PD  T+VS+LSACA  G+++  + + S  V   G
Sbjct: 508 ISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNA-G 566

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV--CMGE 479
           +   +     +V++Y + G +D+A  +  + +E +     W  ++     HG     +  
Sbjct: 567 LVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYS--WTVMIGGLAQHGRGLDALDL 624

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
               KL   +P N ++F  ++    +AG +D+  R
Sbjct: 625 FVKMKLEGFKP-NGYSFVAVLSACSHAGLVDEGRR 658



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ GI     T+ S+L  C    A+E   ++H       L  +  + + L+ +YA  G +
Sbjct: 528 LREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSV 587

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D+A +VFD M  R  ++  W  +I G A+ G   DA+ L+ +M+ EG +P+ ++F  VL 
Sbjct: 588 DDARRVFDDMLERDVYS--WTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLS 645

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKAR 249
           AC+  GL+  G +  L   +  +G +  +     +VD+  + G + +A+
Sbjct: 646 ACSHAGLVDEGRRQFLSLTQ-DYGIEPTMEHYTCMVDLLGRAGQLEEAK 693


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/422 (34%), Positives = 236/422 (55%), Gaps = 10/422 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G +LH L+  + L     + + L+ +YA    +D A +VF     R +    W+++I+GY
Sbjct: 244 GTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSIT--WSAMITGY 301

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+ GE   A  ++ QM   G  P +FTF  VL AC+ +G + VG++ H   V+ GF    
Sbjct: 302 AQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQV 361

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
           +V +ALVDMYAKCG I  A+  F ++ +  D++ + +M+TG++ +G   EA  ++  M  
Sbjct: 362 YVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDK 421

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G  P  + ++S+L   A  + L +G Q+H  +L+        +  +L  +YSK G L+ 
Sbjct: 422 QGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLED 481

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +  +F  MP +DV+SWNSII     H +  +AL  FE+M+ +G  PDH+TF++LLSAC+H
Sbjct: 482 SMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSH 541

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
           +G V  G   F  M + Y + P ++HYACMV++  RAG + EA   I + +  +    +W
Sbjct: 542 MGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQLKEAKDFI-DSITIDHGTCLW 600

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
             +L AC    +  +G  A ++L EL  ++   + LL  IY    + +DVERV  ++  R
Sbjct: 601 RIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLR 660

Query: 523 GL 524
           G+
Sbjct: 661 GV 662



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 141/269 (52%), Gaps = 9/269 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            +G T    TF  +L  C  + A+  G + H L+          + S L+ +YA  G I 
Sbjct: 319 SSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIG 378

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F Q+ +       W ++I+G+ + GE+E+A+ LY +M+++G+ P   T   VL+A
Sbjct: 379 DAKDGFHQLYDVDDVVL-WTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRA 437

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L  + +G+++H   ++  F   G V  AL  MY+KCG++  +  VF R+ ++D+IS+
Sbjct: 438 CACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISW 497

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           NS+++ +  HG   +A D+F  M L G  PD +   ++L+  S   +G    GW   R +
Sbjct: 498 NSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACS--HMGLVDRGWFYFRAM 555

Query: 324 EWDLCIANSL------IVVYSKDGKLDQA 346
             D  +  +L      + + S+ G+L +A
Sbjct: 556 TKDYNLIPTLDHYACMVDILSRAGQLKEA 584



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 130/223 (58%), Gaps = 8/223 (3%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV  AL++MY K G +  A+ VFD + +++ +S+ +M++GY       EAF++FR M+  
Sbjct: 159 FVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQK 218

Query: 290 G-FDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
              + +    +++L+  S+   L +G Q+HG VL+ G+   + + NSL+ +Y+K   +D 
Sbjct: 219 CPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDA 278

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F    +++ ++W+++I  ++++ EA      F QM   G  P   TFV +L+AC+ 
Sbjct: 279 AMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSD 338

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +G++ VG++   +MV K G   +V   + +V++Y + G I +A
Sbjct: 339 MGALVVGKQTHCLMV-KLGFETQVYVKSALVDMYAKCGCIGDA 380



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 54/219 (24%)

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--LDQACWLFDHMPQ--KDVVSWNSI 364
           R G  +HGW L+ G      ++NSLI  Y    +  L  A  +F  +P   +DV SWNS+
Sbjct: 31  RTGEALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALRDVASWNSL 90

Query: 365 IHAHSKDH--EALIYFEQM--ERDGVLPD-----------------------HLTFVSLL 397
           ++  S+ H   AL +F  M    + VLP                        H     L 
Sbjct: 91  LNPLSRHHPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHALACKLP 150

Query: 398 SACA---------------HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           S+C                 LG+V   +R+F  M+ +  +S     +A MV+ Y      
Sbjct: 151 SSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVS-----WAAMVSGYATGKCS 205

Query: 443 DEAYS---MIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           +EA+    ++++K   E +  V  A+L A  +   + MG
Sbjct: 206 EEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMG 244


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 246/446 (55%), Gaps = 18/446 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF   ++ C  +  ++   K+H L+    L  +  I S L+  Y  FGL++ A
Sbjct: 54  GVMPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHA 110

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              F+++  R      WN++++GYA++G++E  +  + +M +E V P +FT   +L   A
Sbjct: 111 QVAFEELPIRDVVL--WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFA 168

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G +  G  +H  A++ G+     V N+L+DMY KC  I  A  +F+ +  KD+ S+NS
Sbjct: 169 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 228

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           + + +   G       +   M+  G  PD V ++++L   S L     G ++HG+++  G
Sbjct: 229 IXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSG 288

Query: 323 VEW------DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           +        D+ + N++I +Y+K G +  A  +F+ M  KDV SWN +I     H   +E
Sbjct: 289 LGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNE 348

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F +M    + PD +TFV +LSAC+H G V  G    + M  KY ++P +EHY C++
Sbjct: 349 ALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVI 408

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++ GRAG +DEAY + +  M  EA+PVVW ALL AC LH +  + E AAQ++FELEP++ 
Sbjct: 409 DMLGRAGQLDEAYELAL-TMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHC 467

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
            ++ L+  +YG  GR ++V  V   +
Sbjct: 468 GSYVLMSNVYGAVGRYEEVLEVRHTM 493



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 191/399 (47%), Gaps = 51/399 (12%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F +N++ISG+   G  E+    Y +M  EGV PD+FTFP  +KAC  L ++ + +K+H  
Sbjct: 25  FAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKAC--LDVLEI-KKIHGL 81

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
             +FG   D F+ +ALV+ Y K G +  A+  F+ +  +D++ +N+M+ GY   G     
Sbjct: 82  LFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMV 141

Query: 280 FDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            + FR M      P    ++ IL+  ++   L  G  +HG+ ++ G +  + ++NSLI +
Sbjct: 142 LETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDM 201

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSI--IHAHSKDHEA-LIYFEQMERDGVLPDHLTF 393
           Y K   ++ A  +F+ M +KD+ SWNSI  +H    DH+  L   ++M   G+ PD +T 
Sbjct: 202 YGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 261

Query: 394 VSLLSACAHLGSVKVGERLFSVMV------------------------EKYG-------- 421
            ++L AC+HL ++  G  +   M+                         K G        
Sbjct: 262 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 321

Query: 422 ----ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNV 475
                +  V  +  M+  YG  G  +EA  M     E +  P  V +  +L AC   G V
Sbjct: 322 FERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 381

Query: 476 CMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
             G     ++   +++ P  EH +  +I + G AG+LD+
Sbjct: 382 SQGRNFLAQMKSKYDVAPTIEH-YTCVIDMLGRAGQLDE 419



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 120/226 (53%), Gaps = 16/226 (7%)

Query: 238 MYAKCGDIVKARTVF-DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD-- 294
           MY+KC  +  A ++F D     ++ ++N++++G+I +G   E F+ ++ M   G  PD  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 295 --PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
             P AI + L    +L I  ++HG + + G+E D+ I ++L+  Y K G ++ A   F+ 
Sbjct: 61  TFPCAIKACL---DVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 116

Query: 353 MPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           +P +DVV WN++++ +++  +    L  F +M  + V+P   T   +LS  A +G +  G
Sbjct: 117 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNG 176

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVEK 452
            R+      K G    V     ++++YG+   I++A   + M+ EK
Sbjct: 177 -RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK 221



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSK 131
           D  ++ L+  +  GI     T  ++L  C  L A+ HG ++H  +I + L +  K I   
Sbjct: 240 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 299

Query: 132 LLR-----LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
           LL+     +YA  G + +AH VF++M N+   +  WN +I GY   G   +A+ ++ +M 
Sbjct: 300 LLKNAVIDMYAKCGSMRDAHLVFERMXNKDVAS--WNIMIMGYGMHGYGNEALEMFSRMC 357

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVG 213
           E  ++PD+ TF  VL AC+  G +  G
Sbjct: 358 EVQLKPDEVTFVGVLSACSHAGFVSQG 384


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 251/453 (55%), Gaps = 9/453 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
             + +  G+   + TFAS L +  +  ++ H  ++H  I  + +  +  + S L+ +Y  
Sbjct: 302 FNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFK 361

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G ++ A ++F Q  N         ++ISGY   G   DAI  +  + +EG+  +  T  
Sbjct: 362 GGDVEMARKIFQQ--NILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMA 419

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL ACA +  ++ G+++H   ++        V +A+ DMYAKCG +  A   F R+ ++
Sbjct: 420 SVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDR 479

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVH 315
           D + +NSM++ +  +G    A D+FR M ++G   D V++SS L+   N   L  G ++H
Sbjct: 480 DSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMH 539

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
           G+V+R     D  +A++LI +YSK G L  A  +F+ M  K+ VSWNSII A   H    
Sbjct: 540 GYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPR 599

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           E L  + +M R G+ PDH+TF+ ++SAC H G V  G   F  M  +YGI  R+EHYACM
Sbjct: 600 ECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACM 659

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+LYGRAG + EA+  I + M F     VWG LL AC LHGNV + + A++ L EL+P N
Sbjct: 660 VDLYGRAGRVHEAFDTI-KSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKN 718

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              + LL  ++ +AG    V +V  ++ ++G++
Sbjct: 719 SGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQ 751



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 198/395 (50%), Gaps = 14/395 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           + +T Q E   SL   C     V+   ++H  +    +      SS++L LY   G   +
Sbjct: 8   DSLTTQLE---SLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRD 64

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F ++  R  +A PWN +I G   LG ++ A+  YF+M    V PD++TFP V+KAC
Sbjct: 65  AGNLFFELELR--YALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 122

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            GL  + +   VH  A   GF  D F  +AL+ +YA  G I  AR VFD +  +D I +N
Sbjct: 123 GGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWN 182

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV---AISSILANASLLRIGAQVHGWVLRR 321
            ML GY+  G    A   F  M  +    + V    I SI A       G Q+HG V+  
Sbjct: 183 VMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGS 242

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G E+D  +AN+L+ +YSK G L  A  LF+ MPQ D V+WN +I  + ++    EA   F
Sbjct: 243 GFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLF 302

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M   GV PD +TF S L +    GS++  + + S +V ++ +   V   + ++++Y +
Sbjct: 303 NAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIV-RHRVPFDVYLKSALIDVYFK 361

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            G ++ A  +  + +  + +  V  A++    LHG
Sbjct: 362 GGDVEMARKIFQQNILVDVA--VCTAMISGYVLHG 394



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 198/384 (51%), Gaps = 19/384 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +++ C  L  V   + +H    +     +    S L++LYA  G I +A +VFD++
Sbjct: 114 TFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDEL 173

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WN ++ GY + G++++AI  + +M       +  T+  +L  CA  G    
Sbjct: 174 PLRDTIL--WNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCA 231

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   +  GF FD  V N LV MY+KCG+++ AR +F+ +   D +++N ++ GY+ 
Sbjct: 232 GTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQ 291

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G   EA  +F  MI  G  PD V  +S L +   +  LR   +VH +++R  V +D+ +
Sbjct: 292 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYL 351

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            ++LI VY K G ++ A  +F      DV    ++I     H  + +A+  F  + ++G+
Sbjct: 352 KSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGM 411

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY----ACMVNLYGRAGLI 442
           + + LT  S+L ACA + ++K G+ L   +++K     R+E+     + + ++Y + G +
Sbjct: 412 VTNSLTMASVLPACAAVAALKPGKELHCHILKK-----RLENIVNVGSAITDMYAKCGRL 466

Query: 443 DEAYSMIVEKMEFEASPVVWGALL 466
           D AY     +M  +   V W +++
Sbjct: 467 DLAYEFF-RRMS-DRDSVCWNSMI 488


>gi|414877123|tpg|DAA54254.1| TPA: hypothetical protein ZEAMMB73_730789 [Zea mays]
          Length = 868

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 237/406 (58%), Gaps = 19/406 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + ++ +YA  G ++ + +VFD+M NR A +  WN+L+ GYA      +A++++ ++  
Sbjct: 454 VYTGMVDVYAKGGDMESSRKVFDEMLNRGAAS--WNALLVGYARNKMCLEALSVFRELAA 511

Query: 188 EG--VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGD 244
           +G  V  DQ +   VL ACA  G +  G +VH  A + G       V NAL+DMY +CG 
Sbjct: 512 QGREVSLDQVSVSSVLSACAVAGALNYGRQVHACATKVGLELSAVCVSNALLDMYTRCGC 571

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
             ++  + + +G +D++++N ++   IH     EA  +FR M+ NG  PD VA +++L  
Sbjct: 572 SRESSALLNAVGCRDVVTWNIIIRSCIHDNRFKEACVLFRSMVRNGTLPDDVAFATVLQA 631

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF----DHMPQKD 357
            A  S   IGA +H  V++ G  +   + +SLI +YSK G LD A   F    DH+    
Sbjct: 632 SACMSAWAIGASMHASVVKTGFLYSDGVTSSLITMYSKCGCLDDAHRAFVGAKDHL---H 688

Query: 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           ++SW ++I A   H    +A+  FE M  +G+ PDH+TFVS+LS+C+H G V+ G R F 
Sbjct: 689 IMSWTAMITALQQHGHGMQAIDVFENMLENGIPPDHITFVSVLSSCSHSGLVEQGRRYFD 748

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M   + I+P+ EHYACMV+++GRAGL+ EA   I  +M  +    V GALL+AC    +
Sbjct: 749 SMTRVHKITPQNEHYACMVDMFGRAGLLTEAKRFI-HQMGPKQDASVLGALLWACMNCRD 807

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           + MG+  A+KLF +EP N  N+ LL  IY + GRL++ + V R ++
Sbjct: 808 LEMGKEVAKKLFVIEPGNTGNYVLLANIYTSHGRLEEAKEVRRWMM 853



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 239/523 (45%), Gaps = 64/523 (12%)

Query: 50  PKSSPTPLLTNQ-KAFPKTKLQAL------DSIIQDLESSVQNGITVQTETFASLLETCY 102
           P  +P+ +L ++    P T LQA               S +  G         +LL T  
Sbjct: 265 PPDTPSDVLGSRLTNGPVTNLQATALRFAAHHTAAPSPSRMSTGGGTTLRELTALLSTLR 324

Query: 103 Q--LKAVEHGIKLH-RLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           +  L+   H  +LH RL+ +   R +    + ++L+ LYA  G + +A + F +    +A
Sbjct: 325 RARLQHPAHAAQLHARLLISAGARPHPHPVLLTQLVSLYAAAGRLADALRAF-RAHLPSA 383

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
               +  L+S +A    Y D     F      + P       VL ACAGL  +  G +VH
Sbjct: 384 NLHTYAVLVSAFAR--PYPDLAFSLFSGSRRQLRPSPHVISAVLAACAGLQPL-CGRQVH 440

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
             A +     D FV   +VD+YAK GD+  +R VFD + N+   S+N++L GY  + + +
Sbjct: 441 TCAAKVVPPGDVFVYTGMVDVYAKGGDMESSRKVFDEMLNRGAASWNALLVGYARNKMCL 500

Query: 278 EAFDIFRGMILNGFDP--DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD-LCIAN 331
           EA  +FR +   G +   D V++SS+L   A A  L  G QVH    + G+E   +C++N
Sbjct: 501 EALSVFRELAAQGREVSLDQVSVSSVLSACAVAGALNYGRQVHACATKVGLELSAVCVSN 560

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLP 388
           +L+ +Y++ G   ++  L + +  +DVV+WN II +   D+   EA + F  M R+G LP
Sbjct: 561 ALLDMYTRCGCSRESSALLNAVGCRDVVTWNIIIRSCIHDNRFKEACVLFRSMVRNGTLP 620

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D + F ++L A A + +  +G  + + +V K G        + ++ +Y + G +D+A+  
Sbjct: 621 DDVAFATVLQASACMSAWAIGASMHASVV-KTGFLYSDGVTSSLITMYSKCGCLDDAHRA 679

Query: 449 IV-------------------------------EKMEFEASP---VVWGALLYACYLHGN 474
            V                               E M     P   + + ++L +C   G 
Sbjct: 680 FVGAKDHLHIMSWTAMITALQQHGHGMQAIDVFENMLENGIPPDHITFVSVLSSCSHSGL 739

Query: 475 VCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
           V  G     +  ++ ++ P NEH +  ++ ++G AG L + +R
Sbjct: 740 VEQGRRYFDSMTRVHKITPQNEH-YACMVDMFGRAGLLTEAKR 781



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 2/181 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
             S V+NG       FA++L+    + A   G  +H  +       + G++S L+ +Y+ 
Sbjct: 610 FRSMVRNGTLPDDVAFATVLQASACMSAWAIGASMHASVVKTGFLYSDGVTSSLITMYSK 669

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D+AH+ F    +       W ++I+   + G    AI ++  M E G+ PD  TF 
Sbjct: 670 CGCLDDAHRAFVGAKDHLHI-MSWTAMITALQQHGHGMQAIDVFENMLENGIPPDHITFV 728

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
            VL +C+  GL+  G +      R             +VDM+ + G + +A+    ++G 
Sbjct: 729 SVLSSCSHSGLVEQGRRYFDSMTRVHKITPQNEHYACMVDMFGRAGLLTEAKRFIHQMGP 788

Query: 258 K 258
           K
Sbjct: 789 K 789


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 234/446 (52%), Gaps = 24/446 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL----------LRLYATF 139
              T  +LL    Q  A+  G  +H       L  N+   SKL          L +YA  
Sbjct: 112 NASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKC 171

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFT 196
           G +  A +VFD M  R      W++LI G+        A  L+  M  +G+    P   +
Sbjct: 172 GSLLYARRVFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--S 227

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
               L+ACA L  +R+GE++H    + G   D    N+L+ MYAK G I +A  +FD + 
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 287

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
            KD +SY+++++GY+ +G   EAF +F+ M     +PD   + S++   S    L+ G  
Sbjct: 288 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 347

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
            HG V+ RG+  +  I N+LI +Y+K G++D +  +F+ MP +D+VSWN++I     H  
Sbjct: 348 SHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGL 407

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EA   F +M   G  PD +TF+ LLSAC+H G V  G+  F VM   YG++PR+EHY 
Sbjct: 408 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI 467

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L  R G +DEAY  I + M   A   VW ALL AC ++ N+ +G+  ++ + EL P
Sbjct: 468 CMVDLLSRGGFLDEAYEFI-QSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 526

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVE 516
           +   NF LL  IY  AGR D+   V 
Sbjct: 527 EGTGNFVLLSNIYSAAGRFDEAAEVR 552



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 220/439 (50%), Gaps = 33/439 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF   L+ C  L     G  +HR      L+ +  +S+ LL +Y     + +A  +F  M
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 71

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIA--LYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
             R   A  WN++++GYA  G Y  A+A  L  QM+   + P+  T   +L   A  G +
Sbjct: 72  PARDLVA--WNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGAL 129

Query: 211 RVGEKVHLDAVRFGFG---------FDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDL 260
             G  VH   +R              DG +L  AL+DMYAKCG ++ AR VFD +  ++ 
Sbjct: 130 AQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 189

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSILANASL--LRIGAQVH 315
           +++++++ G++    + +AF +F+ M+  G     P  +A S++ A ASL  LR+G Q+H
Sbjct: 190 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA-SALRACASLDHLRMGEQLH 248

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
             + + GV  DL   NSL+ +Y+K G +DQA  LFD M  KD VS+++++  + ++    
Sbjct: 249 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 308

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EA + F++M+   V PD  T VSL+ AC+HL +++ G      ++ + G++        +
Sbjct: 309 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNAL 367

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE--- 489
           +++Y + G ID   S  V  M      V W  ++    +HG   +G+ A     E+    
Sbjct: 368 IDMYAKCGRID--LSRQVFNMMPSRDIVSWNTMIAGYGIHG---LGKEATALFLEMNNLG 422

Query: 490 -PDNEHNFELLIKIYGNAG 507
            P +   F  L+    ++G
Sbjct: 423 FPPDGVTFICLLSACSHSG 441



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 173/391 (44%), Gaps = 54/391 (13%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M    V P+ +TFP  LKAC+ L     G  +H  A+  G   D FV  AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-----VAIS 299
           +  A  +F  +  +DL+++N+ML GY HHG+   A      M +      P     VA+ 
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWD----------LCIANSLIVVYSKDGKLDQACWL 349
            +LA    L  G  VH + +R  +  +          + +  +L+ +Y+K G L  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 350 FDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV-LPDHLTFVSLLSACAHLGS 405
           FD MP ++ V+W+++I      S+  +A + F+ M   G+      +  S L ACA L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE---KMEFEASPVVW 462
           +++GE+L +++  K G+   +     ++++Y +AGLID+A ++  E   K     S +V 
Sbjct: 241 LRMGEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 463 GAL-------LYACYLHGNVCMGETAAQKLFELEPDNEHNFEL----------------- 498
           G +        +  +     C  E  A  +  L P   H   L                 
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 499 -------LIKIYGNAGRLDDVERVERMLVDR 522
                  LI +Y   GR+D   +V  M+  R
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 265/467 (56%), Gaps = 19/467 (4%)

Query: 66  KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           K  ++AL+  ++     V  G+     T +S ++ C++L  V  G   H ++ T+    N
Sbjct: 141 KEHVKALEVFVE----MVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWN 196

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             ISS L  +Y       +A +VFD+M         W +++S +++   YE+A+ L++ M
Sbjct: 197 HVISSTLAYMYGVNKEPVDARRVFDEMPEPDVIC--WTAVLSAFSKNDLYEEALGLFYAM 254

Query: 186 EE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
              +G+ PD  TF  VL AC  L  ++ G+++H   +  G G +  V ++L+DMY K G 
Sbjct: 255 HRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGS 314

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           + +AR VF+ +  K+++S++++L GY  +G   +A ++FR M     + D     ++L  
Sbjct: 315 VREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREME----EKDLYCFGTVLKA 370

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            A  + +R+G ++HG  +RRG   ++ + ++LI +Y K G +D A  ++  M  +++++W
Sbjct: 371 CAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITW 430

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N+++ A   + +  EA+ +F  M + G+ PD+++F+++L+AC H G V+ G   F++M +
Sbjct: 431 NAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAK 490

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV-CM 477
            YGI P  EHY+CM++L GRAGL +EA +++ ++ E      +WG LL  C  + +   +
Sbjct: 491 SYGIKPGTEHYSCMIDLLGRAGLFEEAENLL-DRAECRNDASLWGVLLGPCAANTDASSI 549

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            E  A+++ ELEP    ++ LL  +Y   GR  D  ++ +++V RG+
Sbjct: 550 AERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRKLMVRRGV 596



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 235/447 (52%), Gaps = 19/447 (4%)

Query: 35  QQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETF 94
           ++Q SR+   +    P +S +      +     KL  L   I+ L S+  + I+ ++  +
Sbjct: 6   KRQFSRH--ASLCLTPSNSSSAPTKQSRILELCKLGQLTDAIRILNSTHSSEISAKSNLY 63

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMS 153
           ASLL+TC ++ +  HG++ H  +  + L  ++ + + LL LY   G  + E  +VFD M 
Sbjct: 64  ASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMF 123

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            + A +  W S++SGY    E+  A+ ++ +M   G++P++FT    +KAC  LG +R+G
Sbjct: 124 VKDAIS--WTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLG 181

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
              H   +  GF ++  + + L  MY    + V AR VFD +   D+I + ++L+ +  +
Sbjct: 182 RCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKN 241

Query: 274 GLLVEAFDIFRGMIL-NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            L  EA  +F  M    G  PD     ++L    N   L+ G ++HG ++  G+  ++ +
Sbjct: 242 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 301

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGV 386
            +SL+ +Y K G + +A  +F+ MP+K++VSW++++  + ++ E   A+  F +ME    
Sbjct: 302 ESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREMEE--- 358

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             D   F ++L ACA L +V++G+ +    V + G    V   + +++LYG++G ID A 
Sbjct: 359 -KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRR-GCFGNVIVESALIDLYGKSGCIDYA- 415

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHG 473
           S +  KM    + + W A+L A   +G
Sbjct: 416 SRVYSKMSVR-NMITWNAMLSALAQNG 441


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 165/521 (31%), Positives = 278/521 (53%), Gaps = 25/521 (4%)

Query: 22  SKNKRSRKQRRQKQQQISRN----RITTFSSYPKSSPTPLLTNQKAFPKTK-------LQ 70
           ++N  S  QR +  + +S++    R T+      S  + L++     P+T+        +
Sbjct: 205 NRNFDSLVQRTEPMRGVSKHLQLLRPTSSRCCSYSVNSSLVSPHYVPPETESLLNHCYRR 264

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
            L S +  L+S  + G+   + T++ L++ C    AV  G ++HR I +N       +++
Sbjct: 265 DLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTN 324

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
            L+ +Y  F L++EA  +FD+M  R   +  W ++IS Y+     + A+ L   M  +GV
Sbjct: 325 ILINMYVKFNLLEEAQVLFDKMPERNVVS--WTTMISAYSNAQLNDRAMRLLAFMFRDGV 382

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
            P+ FTF  VL+AC  L  ++   ++H   ++ G   D FV +AL+D+Y+K G++++A  
Sbjct: 383 MPNMFTFSSVLRACERLYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALK 439

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
           VF  +   D + +NS++  +  H    EA  +++ M   GF  D   ++S+L    + SL
Sbjct: 440 VFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSL 499

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L +G Q H  VL+   + DL + N+L+ +Y K G L+ A ++F+ M +KDV+SW+++I  
Sbjct: 500 LELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAG 557

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
            +++    EAL  FE M+  G  P+H+T + +L AC+H G V  G   F  M   YGI P
Sbjct: 558 LAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDP 617

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
             EHY CM++L GRA  +D+   +I E M  E   V W  LL AC    NV +   AA++
Sbjct: 618 GREHYGCMLDLLGRAEKLDDMVKLIHE-MNCEPDVVTWRTLLDACRARQNVDLATYAAKE 676

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + +L+P +   + LL  IY  + R +DV  V R +  RG+ 
Sbjct: 677 ILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIR 717


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 230/417 (55%), Gaps = 42/417 (10%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           I  AH++FD +   T F +  N LI  Y+  G +    +LY QM  +G  P++ +F  + 
Sbjct: 32  IPYAHKLFDFIPKPTVFLY--NKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLF 89

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            ACA L   + G  +H   V+ GFG D F L ALVDMYAK G +  AR  FD +  +D+ 
Sbjct: 90  SACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVP 149

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF-------------------- 291
           ++NSM+ GY   G L  A ++FR M          +++G+                    
Sbjct: 150 TWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEET 209

Query: 292 --DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
              P+ V ++S+L   AN   L +G ++  +    G   +L ++N+L+ +Y++ G++D+A
Sbjct: 210 EMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKA 269

Query: 347 CWLFDHMP-QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
             +F+ +  ++++ SWNS+I     H +  EA+  F +M R+G  PD +TFV +L AC H
Sbjct: 270 WGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTH 329

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V  G+  F  M   + I+P++EHY CMV+L GRAG + EA+ +I+ +M  E   VVW
Sbjct: 330 GGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLIL-RMPMEPDSVVW 388

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           G LL AC  HG+V + E AA  LFELEP N  N+ +L  IY  AGR D V R+ +++
Sbjct: 389 GTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLM 445


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 242/449 (53%), Gaps = 11/449 (2%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           I QD+ S    G+     TF+S L  C  +  +  G ++      +    +  + + L+ 
Sbjct: 147 IYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALIN 206

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y+  G ++ A +VFD++ NR   A  WN++ISGYA+ G    A+ L+ +M     +P+ 
Sbjct: 207 MYSKCGSLESARKVFDRLKNRDVIA--WNTMISGYAKQGAATQALELFQRMGPNDPKPNV 264

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD-IVKARTVFD 253
            TF  +L AC  L  +  G  +H      G+  D  + N L++MY KC   + +AR VF+
Sbjct: 265 VTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFE 324

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RI 310
           R+  +D+I++N ++  Y+ +G   +A DIF+ M L    P+ + +S++L+  ++L   R 
Sbjct: 325 RLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQ 384

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G  VH  +     + D+ + NSL+ +Y++ G LD    +F  +  K +VSW+++I A   
Sbjct: 385 GKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQ 444

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H      L +F ++ ++G+  D +T VS LSAC+H G +K G + F  MV  +G++P   
Sbjct: 445 HGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYR 504

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           H+ CMV+L  RAG ++ A ++I   M F    V W +LL  C LH +       A KLFE
Sbjct: 505 HFLCMVDLLSRAGRLEAAENLI-HDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563

Query: 488 LEPDNEHN-FELLIKIYGNAGRLDDVERV 515
           LE ++EH+   LL  +Y  AGR DDV + 
Sbjct: 564 LESEDEHSTVTLLSNVYAEAGRWDDVRKT 592



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 223/422 (52%), Gaps = 29/422 (6%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLI-PTNLLRKNKGISSKLLRLYATFGL 141
           V  G+      F   +  C   K ++ G  LH +I  T LL  +  + + L+ +YA    
Sbjct: 50  VLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRD 109

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---EEEGVEPDQFTFP 198
           ++ A + FD+M  +T     WN+LI+GY+  G++  A+ +Y  M     EG++PD  TF 
Sbjct: 110 LELARKTFDEMGKKTLVT--WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFS 167

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
             L AC+ +G I  G ++    V  G+  D  V NAL++MY+KCG +  AR VFDR+ N+
Sbjct: 168 SALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR 227

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI-----LANASLLRIGAQ 313
           D+I++N+M++GY   G   +A ++F+ M  N  DP P  ++ I       N   L  G  
Sbjct: 228 DVIAWNTMISGYAKQGAATQALELFQRMGPN--DPKPNVVTFIGLLTACTNLEDLEQGRA 285

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSK-DGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           +H  V   G E DL I N L+ +Y+K    L++A  +F+ +  +DV++WN +I A   + 
Sbjct: 286 IHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYG 345

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           +  +AL  F+QM+ + V P+ +T  ++LSACA LG+ + G+ + +++      +  V   
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 430 ACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           + M N+Y R G +D+    ++ I +K     S V W  L+ A   HG+     T  +  +
Sbjct: 406 SLM-NMYNRCGSLDDTVGVFAAIRDK-----SLVSWSTLIAAYAQHGH---SRTGLEHFW 456

Query: 487 EL 488
           EL
Sbjct: 457 EL 458



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 175/349 (50%), Gaps = 14/349 (4%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G + +A  VF  + +  + +  W  +++ +A  G Y +A+  Y +M  EG+ PD 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVS--WTLIVAAFARNGHYREALGYYRRMVLEGLRPDG 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             F   +  C+    ++ G+ +H   +      FD  +  AL+ MYA+C D+  AR  FD
Sbjct: 59  AMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFD 118

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN---GFDPDPVAISSILANASL--- 307
            +G K L+++N+++ GY  +G    A  I++ M+     G  PD +  SS L   S+   
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           +  G ++    +  G   D  + N+LI +YSK G L+ A  +FD +  +DV++WN++I  
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238

Query: 368 HSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           ++K     +AL  F++M  +   P+ +TF+ LL+AC +L  ++ G R     V+++G   
Sbjct: 239 YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYES 297

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            +     ++N+Y +     E    + E++      + W  L+ A   +G
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYG 345



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 149/303 (49%), Gaps = 22/303 (7%)

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-- 295
           MY KCG +  A  VF  I + + +S+  ++  +  +G   EA   +R M+L G  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 296 -VAISSILANASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            V    + +++  L+ G  +H  +L    +E+D+ +  +LI +Y++   L+ A   FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 354 PQKDVVSWNSIIHAHSK--DHE-ALIYFEQM---ERDGVLPDHLTFVSLLSACAHLGSVK 407
            +K +V+WN++I  +S+  DH  AL  ++ M     +G+ PD +TF S L AC+ +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G  + +  V     S  +   A ++N+Y + G ++ A   + ++++     + W  ++ 
Sbjct: 181 QGREIEARTVASGYASDSIVQNA-LINMYSKCGSLESARK-VFDRLK-NRDVIAWNTMIS 237

Query: 468 ACYLHGNVCMGETAAQKLFE-LEP-DNEHNFELLIKIYGNAGRLDDVER---VERMLVDR 522
                G      T A +LF+ + P D + N    I +      L+D+E+   + R + + 
Sbjct: 238 GYAKQG----AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEH 293

Query: 523 GLE 525
           G E
Sbjct: 294 GYE 296


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 253/449 (56%), Gaps = 11/449 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYATFGLI 142
           Q G+     TF ++L  C  + A+E    LH   I +  L ++  + + L+ LY   G +
Sbjct: 211 QAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGAL 270

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           +EA  VF Q+ N+   +  W+S+I+ +A+ G+ + AI L   M+ EGV P+  TF  VL+
Sbjct: 271 EEAFGVFVQIDNKDIVS--WSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLE 328

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A   L   + G+++H   V+ G+  D  + +ALV MY   G +  AR++F+    +D++S
Sbjct: 329 AVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVS 388

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASL--LRIGAQVHGWVL 319
           ++SM+ GY  +     A  +FR M ++G  P+ V  +S+I A A +  LR G Q+H  V 
Sbjct: 389 WSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVR 448

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
             G++ D+ +A +L+ +Y K G+L++A  +F  M +K++++W SI  A+ ++     +L 
Sbjct: 449 CLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLK 508

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
               ME  G+ PD + FV++L +C + G +  G   +++M + +GI+P VEH  CMV++ 
Sbjct: 509 LLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDIL 568

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA   ++  M+FE+S + W  LL AC  H +      AA+K+F+LEP N   +
Sbjct: 569 GRAGKL-EAAEQLINTMKFESS-LAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPY 626

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  ++  AG  +  E   R +  RG++
Sbjct: 627 VLLSSVFCAAGSWEAAEETRRRMDGRGVQ 655



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 202/395 (51%), Gaps = 22/395 (5%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL-----RLYATFGL 141
           I  +    A++L  C  L+A+  G ++H L+    L +++     LL     ++Y   G 
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGC 65

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
            D A  VFD+M ++   A  W SLIS +   G + DA+ L+ +M   GV PD+ TF  +L
Sbjct: 66  TDLALDVFDRMKDQNVVA--WTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSIL 123

Query: 202 KACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
              +G    +  G++VH   ++ G+  D  V+N +V+MY KCGD+ +A  VFD I + ++
Sbjct: 124 LKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNV 183

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
            S+  ++  Y  +G  +E   +   M   G  PD    +++L   +   +GA     +L 
Sbjct: 184 FSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTA--VGALEEAKILH 241

Query: 321 ------RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE- 373
                  G++ D  +  +LI +Y K G L++A  +F  +  KD+VSW+S+I A ++  + 
Sbjct: 242 AATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQA 301

Query: 374 --ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
             A+     M+ +GV P+++TFV++L A   L + + G+ + + +V+  G S  V   + 
Sbjct: 302 KSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQA-GYSDDVCLTSA 360

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +V +Y   G ++ A S+     E +   V W +++
Sbjct: 361 LVKMYCNWGWVETARSIFESSRERDV--VSWSSMI 393



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 147/279 (52%), Gaps = 12/279 (4%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD-----GFVLNALVDMY 239
           ME   ++ +      +L AC+ L  +  G++VH   +R     D       + N ++ MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
            +CG    A  VFDR+ +++++++ S+++ +   G   +A  +FR M+L+G  PD +  +
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 300 SILANAS----LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           SIL   S     L  G +VH  +++ G E D  + N ++ +Y K G ++QA  +FD +  
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQD 180

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
            +V SW  II A++++    E L    +M + GV PD  TF ++L AC  +G+++  + L
Sbjct: 181 PNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKIL 240

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            +  +   G+         ++NLYG+ G ++EA+ + V+
Sbjct: 241 HAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQ 279



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 23/337 (6%)

Query: 37  QISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFAS 96
           QI    I ++SS   +        Q    K+ +Q L  ++ DLE     G+     TF +
Sbjct: 279 QIDNKDIVSWSSMIAAFA------QSGQAKSAIQLL--MLMDLE-----GVRPNNVTFVN 325

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +LE    LKA ++G ++H  I       +  ++S L+++Y  +G ++ A  +F+  S+R 
Sbjct: 326 VLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFE--SSRE 383

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                W+S+I+GY++      A++L+ +ME +GV+P+  TF   + ACAG+G +R G ++
Sbjct: 384 RDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQL 443

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H      G   D  V  ALV++Y KCG + +A  VF  +  K+L+++ S+   Y  +G  
Sbjct: 444 HERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHG 503

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA------ 330
             +  +  GM L G  PD +   +IL + +    G    G      +  D  IA      
Sbjct: 504 SRSLKLLHGMELQGMKPDGIVFVAILVSCNY--AGQMSKGLHYYNLMTQDFGIAPAVEHC 561

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
             ++ +  + GKL+ A  L + M  +  ++W  ++ A
Sbjct: 562 GCMVDILGRAGKLEAAEQLINTMKFESSLAWMMLLTA 598


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 242/450 (53%), Gaps = 7/450 (1%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           S +++G +    +F  +L++C  L     G +LH  +          + + L+ +Y   G
Sbjct: 40  SMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCG 99

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           L+++A +VF++  + +     +N+LISGY    +  DA  ++ +M+E GV  D  T   +
Sbjct: 100 LVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGL 159

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           +  C     + +G  +H + V+ G   +  VLN+ + MY KCG +   R +FD +  K L
Sbjct: 160 VPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGL 219

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGW 317
           I++N++++GY  +GL  +  ++F  M  +G  PDP  + S+L++ + L   +IG +V   
Sbjct: 220 ITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGEL 279

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           V   G   ++ ++N+LI +Y++ G L +A  +FD MP K +VSW ++I     H      
Sbjct: 280 VEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETG 339

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F+ M + G+ PD   FV +LSAC+H G    G  LF  M  +Y + P  EHY+C+V+
Sbjct: 340 LTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 399

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAG +DEA   I + M  E    VWGALL AC +H NV M E A  K+ E EP N  
Sbjct: 400 LLGRAGRLDEAMEFI-DSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIG 458

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + L+  IY ++   + + R+  M+ +R  
Sbjct: 459 YYVLMSNIYSDSKNQEGIWRIRVMMRERAF 488



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 215/419 (51%), Gaps = 59/419 (14%)

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N    +  WN  +   A    + ++I+LY  M   G  PD F+FP +LK+CA L L   G
Sbjct: 10  NSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSG 69

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL--ISYNSMLTGYI 271
           +++H   +R G   + FVL AL+ MY KCG +  AR VF+   +     + YN++++GY 
Sbjct: 70  QQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYT 129

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
            +  + +A  +FR M   G   D V I  ++   ++   L +G  +HG  ++ G   ++ 
Sbjct: 130 ANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVA 189

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + NS I +Y K G ++    LFD MP K +++WN++I  +S++   ++ L  FEQM+  G
Sbjct: 190 VLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSG 249

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD  T VS+LS+CAHLG+ K+G+ +   +VE  G +P V     ++++Y R G + +A
Sbjct: 250 VCPDPFTLVSVLSSCAHLGAKKIGQEV-GELVEANGFAPNVFLSNALISMYARCGNLAKA 308

Query: 446 YSMIVEKMEFEASPVVWGALLYACY-LHGNVCMGET------------------------ 480
            + + + M  + S V W A++  CY +HG   MGET                        
Sbjct: 309 RA-VFDIMPVK-SLVSWTAMI-GCYGMHG---MGETGLTLFDDMIKRGIRPDGAVFVMVL 362

Query: 481 -----------------AAQKLFELEPDNEHNFELLIKIYGNAGRLDD-VERVERMLVD 521
                            A ++ ++LEP  EH +  L+ + G AGRLD+ +E ++ M V+
Sbjct: 363 SACSHSGLTDKGLELFRAMKREYKLEPGPEH-YSCLVDLLGRAGRLDEAMEFIDSMPVE 420



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +++  E    +G+     T  S+L +C  L A + G ++  L+  N    N  +S+ L+ 
Sbjct: 238 VLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALIS 297

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA  G + +A  VFD M  ++  +  W ++I  Y   G  E  + L+  M + G+ PD 
Sbjct: 298 MYARCGNLAKARAVFDIMPVKSLVS--WTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDG 355

Query: 195 FTFPRVLKACAGLGLIRVG 213
             F  VL AC+  GL   G
Sbjct: 356 AVFVMVLSACSHSGLTDKG 374


>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
          Length = 502

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 239/440 (54%), Gaps = 16/440 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            ++LL  C    A+  G +LH          +  + + L+ LY+  G +  A +VFD M 
Sbjct: 9   LSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVFDGMP 68

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           + +  A+  N L++        + A+ L  ++   G+ PD+++ P VL+ACA      +G
Sbjct: 69  SPSMHAY--NVLLAASPP----DAAVKLVSRLVASGLRPDRYSVPAVLRACAESRDALLG 122

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  AVR G   +  V  AL+DMYAK G +  A  VFD +  +D +++N M+TGY   
Sbjct: 123 SVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYARA 182

Query: 274 GLLVEAFDIFRGMILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLR-RGVEWDL 327
           G   E  ++FR   +   G   D  A+ S+L   A+   L  G ++HG + R      D 
Sbjct: 183 GRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASSSDT 242

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + N+LI +Y K G++D A  +F  M +K+VVSW+S+I     H    EAL  +E+M   
Sbjct: 243 VVGNALIDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVSV 302

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           GV P+ +TFVS+LS+C+H G V  G R+F  M + + + P  +HYACMV+L GRAG I+E
Sbjct: 303 GVKPNCVTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIEE 362

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  ++ E M  E    +WGALL AC +H NV +GE AA +LFELE DN  N+  L  IY 
Sbjct: 363 AVGLVNE-MPMEPGASLWGALLSACAIHNNVDVGEVAAYRLFELEEDNASNYVTLCGIYD 421

Query: 505 NAGRLDDVERVERMLVDRGL 524
             GR D V  +   + + G+
Sbjct: 422 AIGRSDSVAGLRSRMRELGM 441



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 151/303 (49%), Gaps = 10/303 (3%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D+ ++ +   V +G+     +  ++L  C + +    G  LH       L  N  +S  L
Sbjct: 85  DAAVKLVSRLVASGLRPDRYSVPAVLRACAESRDALLGSVLHGFAVRLGLLANVVVSGAL 144

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY--FQMEEEGV 190
           L +YA  G + +A +VFD+M  R A A  WN +++GYA  G  E+ + L+   Q+E  G+
Sbjct: 145 LDMYAKTGTLGDAGRVFDEMPERDAVA--WNCMVTGYARAGRSEETLELFRKAQIESAGM 202

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKAR 249
             D    P VL  CA  G +  G ++H    R      D  V NAL+DMY KCG +  A+
Sbjct: 203 ARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQ 262

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--- 306
            VF  +  K+++S++S+++ Y  HG+  EA  ++  M+  G  P+ V   SIL++ S   
Sbjct: 263 AVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCSHSG 322

Query: 307 LLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSI 364
           L+  G ++   + +   VE        ++ +  + G +++A  L + MP +   S W ++
Sbjct: 323 LVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPMEPGASLWGAL 382

Query: 365 IHA 367
           + A
Sbjct: 383 LSA 385



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 150/299 (50%), Gaps = 19/299 (6%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P       +L+ CA  G +  G ++H  A+  G   D  +   LV +Y++CG + +AR V
Sbjct: 4   PSSGRLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREV 63

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR-- 309
           FD + +  + +YN +L           A  +   ++ +G  PD  ++ ++L   +  R  
Sbjct: 64  FDGMPSPSMHAYNVLLAASPPDA----AVKLVSRLVASGLRPDRYSVPAVLRACAESRDA 119

Query: 310 -IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +G+ +HG+ +R G+  ++ ++ +L+ +Y+K G L  A  +FD MP++D V+WN ++  +
Sbjct: 120 LLGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGY 179

Query: 369 S---KDHEALIYFE--QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           +   +  E L  F   Q+E  G+  D     S+L+ CA  G +  G  +   M      S
Sbjct: 180 ARAGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASS 239

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY-LHGNVCMGETA 481
                   ++++YG+ G +D A + +   ME E + V W +L+ +CY +HG   MG+ A
Sbjct: 240 SDTVVGNALIDMYGKCGQVDGAQA-VFASME-EKNVVSWSSLI-SCYGVHG---MGKEA 292


>gi|222624644|gb|EEE58776.1| hypothetical protein OsJ_10296 [Oryza sativa Japonica Group]
          Length = 419

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/400 (37%), Positives = 223/400 (55%), Gaps = 37/400 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYF-----QMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEK 215
           W   ++  +  G + D + L+F     Q    G V+P     P  L+ACA L  +  G  
Sbjct: 9   WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 68

Query: 216 VH-LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHH 273
           +H L   R     D     AL+DMY+KCG +  AR VFD + ++ D + +N++L  Y  H
Sbjct: 69  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 128

Query: 274 GLLVEAFDI--------------------FRGMILNGFD--PDPVAISSIL---ANASLL 308
           GL   A  +                    FR M++ G    P    IS+IL   AN + +
Sbjct: 129 GLPEHALALAVKMRGIGLCPDLYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADV 188

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
           + G +VHG+ +  GVE +L ++++L+ +Y+K G + +A  LFD MPQ+  V+WNS+I   
Sbjct: 189 KHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGL 248

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           +      EA+  F++M RDG  PDHLTF ++L+AC++ G V+VG+ L+  M  +YG+ PR
Sbjct: 249 ANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPR 308

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           +EHYACMV+L GRAG +DEAY  I   M  E    VWGALL AC  HGN+ + E AA +L
Sbjct: 309 LEHYACMVHLLGRAGRLDEAYGFI-RAMPLEPDRFVWGALLGACRSHGNIELAELAASRL 367

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             +EPDN  +  LL     NAG+ DDV +++R++  R L+
Sbjct: 368 LAVEPDNAASCLLLSSALANAGKQDDVFKIKRLVKRRRLK 407



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 36/334 (10%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L  C  L  V  G  +H L+ T   L  +   ++ LL +Y+  GL+  A +VFD+M++R 
Sbjct: 54  LRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASR- 112

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--------------------- 195
                WN+L++ YA  G  E A+AL  +M   G+ PD +                     
Sbjct: 113 GDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLYGRARALFRAMMVAGGRVLPSS 172

Query: 196 -TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   +L A A +  ++ G++VH  +V  G   +  V +ALVDMYAKCG +++AR +FD+
Sbjct: 173 ATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDK 232

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           +  +  +++NSM+ G  + G   EA  +F  M+ +G  PD +  +++L   S    G  V
Sbjct: 233 MPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACS---YGGMV 289

Query: 315 H-GWVLRR------GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIH 366
             G +L R      GVE  L     ++ +  + G+LD+A      MP + D   W +++ 
Sbjct: 290 EVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALLG 349

Query: 367 A-HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           A  S  +  L          V PD+     LLS+
Sbjct: 350 ACRSHGNIELAELAASRLLAVEPDNAASCLLLSS 383



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 12/223 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            + T +++L     +  V+HG ++H       + +   +SS L+ +YA  GL+ EA ++F
Sbjct: 171 SSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLF 230

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+M  R+     WNS+I G A  G  ++A+ L+ +M  +G +PD  TF  VL AC+  G+
Sbjct: 231 DKMPQRSTVT--WNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGM 288

Query: 210 IRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSM 266
           + VG K+   A++  +G +  +     +V +  + G + +A      +    D   + ++
Sbjct: 289 VEVG-KILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 347

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVA----ISSILANA 305
           L     HG  +E  ++    +L   +PD  A    +SS LANA
Sbjct: 348 LGACRSHG-NIELAELAASRLL-AVEPDNAASCLLLSSALANA 388


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 242/449 (53%), Gaps = 11/449 (2%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           I QD+ S    G+     TF+S L  C  +  +  G ++      +    +  + + L+ 
Sbjct: 147 IYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALIN 206

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y+  G ++ A +VFD++ NR   A  WN++ISGYA+ G    A+ L+ +M     +P+ 
Sbjct: 207 MYSKCGSLESARKVFDRLKNRDVIA--WNTMISGYAKQGAATQALELFQRMGPNDPKPNV 264

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD-IVKARTVFD 253
            TF  +L AC  L  +  G  +H      G+  D  + N L++MY KC   + +AR VF+
Sbjct: 265 VTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFE 324

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RI 310
           R+  +D+I++N ++  Y+ +G   +A DIF+ M L    P+ + +S++L+  ++L   R 
Sbjct: 325 RMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQ 384

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G  VH  +     + D+ + NSL+ +Y++ G LD    +F  +  K +VSW+++I A   
Sbjct: 385 GKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQ 444

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H      L +F ++ ++G+  D +T VS LSAC+H G +K G + F  MV  +G++P   
Sbjct: 445 HGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYR 504

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           H+ CMV+L  RAG ++ A ++I   M F    V W +LL  C LH +       A KLFE
Sbjct: 505 HFLCMVDLLSRAGRLEAAENLI-HDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563

Query: 488 LEPDNEHN-FELLIKIYGNAGRLDDVERV 515
           LE ++EH+   LL  +Y  AGR DDV + 
Sbjct: 564 LESEDEHSTVTLLSNVYAEAGRWDDVRKT 592



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 222/422 (52%), Gaps = 29/422 (6%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLI-PTNLLRKNKGISSKLLRLYATFGL 141
           V  G+      F   +  C   K ++ G  LH +I  T LL  +  + + L+ +YA    
Sbjct: 50  VLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRD 109

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---EEEGVEPDQFTFP 198
           ++ A + FD+M  +T     WN+LI+GY+  G++  A+ +Y  M     EG++PD  TF 
Sbjct: 110 LELARKTFDEMGKKTLVT--WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFS 167

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
             L AC  +G I  G ++    V  G+  D  V NAL++MY+KCG +  AR VFDR+ N+
Sbjct: 168 SALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR 227

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI-----LANASLLRIGAQ 313
           D+I++N+M++GY   G   +A ++F+ M  N  DP P  ++ I       N   L  G  
Sbjct: 228 DVIAWNTMISGYAKQGAATQALELFQRMGPN--DPKPNVVTFIGLLTACTNLEDLEQGRA 285

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSK-DGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           +H  V   G E DL I N L+ +Y+K    L++A  +F+ M  +DV++WN +I A   + 
Sbjct: 286 IHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYG 345

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           +  +AL  F+QM+ + V P+ +T  ++LSACA LG+ + G+ + +++      +  V   
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 430 ACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           + M N+Y R G +D+    ++ I +K     S V W  L+ A   HG+     T  +  +
Sbjct: 406 SLM-NMYNRCGSLDDTVGVFAAIRDK-----SLVSWSTLIAAYAQHGH---SRTGLEHFW 456

Query: 487 EL 488
           EL
Sbjct: 457 EL 458



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 16/350 (4%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G + +A  VF  + +  + +  W  +++ +A  G Y +A+  Y +M  EG+ PD 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVS--WTLIVAAFARNGHYREALGYYRRMVLEGLRPDG 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVH--LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
             F   +  C+    ++ G+ +H  +   R    FD  +  AL+ MYA+C D+  AR  F
Sbjct: 59  AMFVVAIGVCSSSKDLKQGQLLHAMILETRL-LEFDIILGTALITMYARCRDLELARKTF 117

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN---GFDPDPVAISSILANASL-- 307
           D +G K L+++N+++ GY  +G    A  I++ M+     G  PD +  SS L   ++  
Sbjct: 118 DEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVG 177

Query: 308 -LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            +  G ++    +  G   D  + N+LI +YSK G L+ A  +FD +  +DV++WN++I 
Sbjct: 178 DISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMIS 237

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            ++K     +AL  F++M  +   P+ +TF+ LL+AC +L  ++ G R     V + G  
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVREDGYE 296

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             +     ++N+Y +     E    + E+M      + W  L+ A   +G
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYG 345



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 149/303 (49%), Gaps = 22/303 (7%)

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-- 295
           MY KCG +  A  VF  I + + +S+  ++  +  +G   EA   +R M+L G  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 296 -VAISSILANASLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            V    + +++  L+ G  +H  +L  R +E+D+ +  +LI +Y++   L+ A   FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 354 PQKDVVSWNSIIHAHSK--DHE-ALIYFEQM---ERDGVLPDHLTFVSLLSACAHLGSVK 407
            +K +V+WN++I  +S+  DH  AL  ++ M     +G+ PD +TF S L AC  +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G  + +  V     S  +   A ++N+Y + G ++ A   + ++++     + W  ++ 
Sbjct: 181 QGREIEARTVASGYASDSIVQNA-LINMYSKCGSLESARK-VFDRLK-NRDVIAWNTMIS 237

Query: 468 ACYLHGNVCMGETAAQKLFE-LEP-DNEHNFELLIKIYGNAGRLDDVER---VERMLVDR 522
                G      T A +LF+ + P D + N    I +      L+D+E+   + R + + 
Sbjct: 238 GYAKQG----AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293

Query: 523 GLE 525
           G E
Sbjct: 294 GYE 296


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 241/450 (53%), Gaps = 7/450 (1%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           S +++G +    +F  +L++C  L     G +LH  +          + + L+ +Y   G
Sbjct: 43  SMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCG 102

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           L+ +A +VF++    +  +  +N+LISGY    +  DA  ++ +M+E GV  D  T   +
Sbjct: 103 LVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGL 162

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           +  C     + +G  +H   V+ G   +  VLN+ + MY KCG +   R +FD +  K L
Sbjct: 163 VPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGL 222

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGW 317
           I++N++++GY  +GL  +  +++  M  +G  PDP  + S+L++ + L   +IG +V   
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           V   G   ++ ++N+ I +Y++ G L +A  +FD MP K +VSW ++I     H      
Sbjct: 283 VESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L+ F+ M + G+ PD   FV +LSAC+H G    G  LF  M  +Y + P  EHY+C+V+
Sbjct: 343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 402

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAG +DEA   I E M  E    VWGALL AC +H NV M E A  K+ E EP+N  
Sbjct: 403 LLGRAGRLDEAMEFI-ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIG 461

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + L+  IY ++   + + R+  M+ +R  
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAF 491



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/412 (31%), Positives = 211/412 (51%), Gaps = 59/412 (14%)

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
           PWN  +   A    + ++I+LY  M   G  PD F+FP +LK+CA L L   G+++H   
Sbjct: 20  PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS--YNSMLTGYIHHGLLVE 278
            + G   + FVL AL+ MY KCG +  AR VF+       +S  YN++++GY  +  + +
Sbjct: 80  TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A  +FR M   G   D V +  ++   ++   L +G  +HG  ++ G++ ++ + NS I 
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFIT 199

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLT 392
           +Y K G ++    LFD MP K +++WN++I  +S++   ++ L  +EQM+  GV PD  T
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFT 259

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
            VS+LS+CAHLG+ K+G  +   +VE  G  P V      +++Y R G + +A + + + 
Sbjct: 260 LVSVLSSCAHLGAKKIGHEV-GKLVESNGFVPNVFVSNASISMYARCGNLAKARA-VFDI 317

Query: 453 MEFEASPVVWGALLYACY-LHGNVCMGET------------------------------- 480
           M  + S V W A++  CY +HG   MGE                                
Sbjct: 318 MPVK-SLVSWTAMI-GCYGMHG---MGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSG 372

Query: 481 ----------AAQKLFELEPDNEHNFELLIKIYGNAGRLDD-VERVERMLVD 521
                     A ++ ++LEP  EH +  L+ + G AGRLD+ +E +E M V+
Sbjct: 373 LTDKGLELFRAMKREYKLEPGPEH-YSCLVDLLGRAGRLDEAMEFIESMPVE 423



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +++  E    +G+     T  S+L +C  L A + G ++ +L+ +N    N  +S+  + 
Sbjct: 241 VLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASIS 300

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA  G + +A  VFD M  ++  +  W ++I  Y   G  E  + L+  M + G+ PD 
Sbjct: 301 MYARCGNLAKARAVFDIMPVKSLVS--WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDG 358

Query: 195 FTFPRVLKACAGLGLIRVG 213
             F  VL AC+  GL   G
Sbjct: 359 AVFVMVLSACSHSGLTDKG 377


>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 246/442 (55%), Gaps = 19/442 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  LL  C   K  ++  K H  +      ++  I+++L+  Y+ F  +D A +VFD +S
Sbjct: 23  YTELLNLC---KTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLS 79

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
               F    N +I  YA    + +A+ +Y  M   G+ P+ +T+P VLKAC   G  + G
Sbjct: 80  EPDVFC--CNVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKG 137

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  AV+ G   D FV NALV  YAKC D+  +R VFD I ++D++S+NSM++GY  +
Sbjct: 138 RVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVN 197

Query: 274 GLLVEA----FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           G + +A    +D+ R   + G  PD     ++L   A A+ +  G  +H ++++  +  D
Sbjct: 198 GYVDDAILLFYDMLRDESVGG--PDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLD 255

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMER 383
             +   LI +YS  G +  A  +FD +  + V+ W++II     H    EAL  F Q+  
Sbjct: 256 SAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVG 315

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD + F+ LLSAC+H G ++ G  LF+ M E YG++    HYAC+V+L GRAG ++
Sbjct: 316 AGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAM-ETYGVAKSEAHYACIVDLLGRAGDLE 374

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           +A   I + M  +    ++GALL AC +H N+ + E AA+KLF L+PDN   + +L ++Y
Sbjct: 375 KAVEFI-QSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRYVILAQMY 433

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
            +A R  D  RV +++ D+ ++
Sbjct: 434 EDAERWQDAARVRKVVKDKEIK 455



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF ++L    Q   +  G  +H  I    +  +  + + L+ LY+  G +  A  +FD++
Sbjct: 223 TFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRI 282

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+R+     W+++I  Y   G  ++A+AL+ Q+   G+ PD   F  +L AC+  GL+  
Sbjct: 283 SDRSVIV--WSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQ 340

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G  +      +G          +VD+  + GD+ KA
Sbjct: 341 GWHLFNAMETYGVAKSEAHYACIVDLLGRAGDLEKA 376


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 238/449 (53%), Gaps = 43/449 (9%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           KLH  I    L +++ I + LL  Y   GLI +A Q+FD +  R   A  W SL++    
Sbjct: 24  KLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVA--WASLLTACNL 81

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV--GEKVHLDAVRFGFGFDG 229
                 A+++   +   G  PD F F  ++KACA LG++ V  G++VH       F  D 
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR----- 284
            V ++L+DMYAK G     R VFD I + + IS+ +M++GY   G   EAF +FR     
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR 201

Query: 285 ----------GMIL--NGFDP---------------DPVAISSIL---ANASLLRIGAQV 314
                     G++   NG D                DP+ +SS++   AN +L  +G Q+
Sbjct: 202 NLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQM 261

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKD 371
           HG V+  G E  L I+N+LI +Y+K   L  A ++F  M +KDVVSW SII     H + 
Sbjct: 262 HGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQA 321

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EAL  +++M   GV P+ +TFV L+ AC+H G V  G  LF  MVE +GISP ++HY C
Sbjct: 322 EEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTC 381

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +++L+ R+G +DEA ++I   M        W ALL +C  HGN  M    A  L  L+P+
Sbjct: 382 LLDLFSRSGHLDEAENLI-RTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPE 440

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLV 520
           +  ++ LL  IY  AG  +DV +V ++++
Sbjct: 441 DPSSYILLSNIYAGAGMWEDVSKVRKLMM 469



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 174/400 (43%), Gaps = 69/400 (17%)

Query: 94  FASLLETCYQLKA--VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           FASL++ C  L    V+ G ++H     +    +  + S L+ +YA FGL D    VFD 
Sbjct: 107 FASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDS 166

Query: 152 MSNRTAFA-----------------------------FPWNSLISGYAELGEYEDAIALY 182
           +S+  + +                             F W +LISG  + G   DA  L+
Sbjct: 167 ISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLF 226

Query: 183 FQMEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
            +M  EG+   D      V+ ACA L L  +G+++H   +  G+    F+ NAL+DMYAK
Sbjct: 227 VEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAK 286

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           C D+V A+ +F  +  KD++S+ S++ G   HG   EA  ++  M+L G  P+ V    +
Sbjct: 287 CSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGL 346

Query: 302 L---ANASLLRIGAQV-HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +   ++A L+  G  +    V   G+   L     L+ ++S+ G LD+A  L   MP   
Sbjct: 347 IHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMP--- 403

Query: 358 VVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
                                       V PD  T+ +LLS+C   G+ ++  R+   ++
Sbjct: 404 ----------------------------VNPDEPTWAALLSSCKRHGNTQMAVRIADHLL 435

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
                 P    Y  + N+Y  AG+ ++   +    M  EA
Sbjct: 436 NLKPEDP--SSYILLSNIYAGAGMWEDVSKVRKLMMTLEA 473



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 157/384 (40%), Gaps = 78/384 (20%)

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           + +K+H   ++ G      + N L++ Y KCG I  A  +FD +  +D +++ S+LT   
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI--GAQVHGWVLRRGVEWD 326
                  A  I R ++  GF PD    +S++   AN  +L +  G QVH          D
Sbjct: 81  LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH-------------- 372
             + +SLI +Y+K G  D    +FD +   + +SW ++I  +++                
Sbjct: 141 DVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPY 200

Query: 373 --------------------EALIYFEQMERDGV-LPDHLTFVSLLSACAHLGSVKVGER 411
                               +A   F +M  +G+ + D L   S++ ACA+L   ++G++
Sbjct: 201 RNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ 260

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRA-------------------------------G 440
           +  V++   G    +     ++++Y +                                G
Sbjct: 261 MHGVVI-TLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHG 319

Query: 441 LIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHN 495
             +EA ++  E +     P  V +  L++AC   G V  G T  + + E   + P  +H 
Sbjct: 320 QAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQH- 378

Query: 496 FELLIKIYGNAGRLDDVERVERML 519
           +  L+ ++  +G LD+ E + R +
Sbjct: 379 YTCLLDLFSRSGHLDEAENLIRTM 402


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 242/435 (55%), Gaps = 49/435 (11%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S+L+ C  +     G K+H  I       +  +SS L+ +Y+    +++A +VFD M+ +
Sbjct: 135 SVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVK 194

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
              A   N++++GY + G   +A+ L   M+  G++P+  T+                  
Sbjct: 195 DTVAL--NAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTW------------------ 234

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI----GNKDLISYNSMLTGYI 271
                            N+L+  +++ GD  +   +F  +       D++S+ S+++G++
Sbjct: 235 -----------------NSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFV 277

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +    EAFD F+ M+ +GF P    IS++L   A A+ + +G ++HG+ L  GVE D+ 
Sbjct: 278 QNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIY 337

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           + ++L+ +Y+K G + +A  LF  MP+K+ V+WNSII     H    EA+  F QME++G
Sbjct: 338 VRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEG 397

Query: 386 VLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           V   DHLTF + L+AC+H+G  ++G+RLF +M EKY I PR+EHYACMV+L GRAG + E
Sbjct: 398 VAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHE 457

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           AY MI + M  E    VWGALL AC  H +V + E AA  L ELEP++  N  LL  +Y 
Sbjct: 458 AYCMI-KTMPIEPDLFVWGALLAACRNHRHVELAEVAAMHLMELEPESAANPLLLSSVYA 516

Query: 505 NAGRLDDVERVERML 519
           +AG+    ERV++ +
Sbjct: 517 DAGKWGKFERVKKRI 531



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 187/393 (47%), Gaps = 46/393 (11%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           + E++A L++   + +A+  G KLH  + TN   +   ++S L+  Y   G +  A ++F
Sbjct: 26  EPESYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLF 85

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQ-FTFPRVLKACAGL 207
           D++   T     W +LI   A  G Y+ A+A++ +M+  +G+ P+  F  P VLKAC  +
Sbjct: 86  DKIP--TTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHV 143

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G    GEK+H   ++  F  D FV ++L+ MY+KC  +  AR VFD +  KD ++ N+++
Sbjct: 144 GDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVV 203

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDL 327
            GY+  G   EA  +   M L G  P+ V                    W          
Sbjct: 204 AGYVQQGAANEALGLVESMKLMGLKPNVVT-------------------W---------- 234

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHM----PQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
              NSLI  +S+ G   +   +F  M     + DVVSW S+I     + ++ EA   F+Q
Sbjct: 235 ---NSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQ 291

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M   G  P   T  +LL ACA    V VG  +    +   G+   +   + +V++Y + G
Sbjct: 292 MLSHGFHPTSATISALLPACATAARVSVGREIHGYALVT-GVEGDIYVRSALVDMYAKCG 350

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            I EA ++   +M  E + V W ++++    HG
Sbjct: 351 FISEARNLF-SRMP-EKNTVTWNSIIFGFANHG 381


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 159/500 (31%), Positives = 250/500 (50%), Gaps = 67/500 (13%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T   A+++  C  L A++ G ++H  I  + +  +  + S L+ LY   G ID A+ V +
Sbjct: 173 TFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLN 232

Query: 151 QMSNRTAFAFP-----------------------------WNSLISGYAELGEYEDAIAL 181
            M    AF+                               WNS+ISGY    E  +A+ L
Sbjct: 233 LMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALEL 292

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           +  M  +GV+ D  TF  VL AC+ LG+I  G +VH    + GF  D  + +ALVDMY+K
Sbjct: 293 FNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSK 352

Query: 242 C-------------------------------GDIVKARTVFDRIGNKDLISYNSMLTGY 270
           C                               G I  AR +FD + +K LIS+NSM+ G+
Sbjct: 353 CRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGF 412

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +   +EA D+F  M   G   D  +++ ++   A+ S L +G Q+       G+E+D 
Sbjct: 413 SQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQ 472

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERD 384
            I+ SL+  Y K G ++    LFD M + D V WNS++  ++ +    EAL  F+QM   
Sbjct: 473 IISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSV 532

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           GV P  +TFV +LSAC H G V+ G + F  M   Y I+P +EHY+CMV+LY RAGL+++
Sbjct: 533 GVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLED 592

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A ++I E+M  +A   +W ++L  C  HGN  +G+  A+++ +L+P+N   +  L  IY 
Sbjct: 593 AMNLI-EQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYA 651

Query: 505 NAGRLDDVERVERMLVDRGL 524
                    +V +++ D+ +
Sbjct: 652 TFEDWGRSAQVRKLMYDKKI 671



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 237/446 (53%), Gaps = 13/446 (2%)

Query: 86   GITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI     T+++LL     + +   G ++H  +I   +   N  + + L+ +Y  FG++D 
Sbjct: 837  GIRPSGFTYSTLLSF---VSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDY 893

Query: 145  AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
            A  VF  M      +  WNSLI    + G    A+  +  M   G  PDQFT   V+  C
Sbjct: 894  AFGVFITMEELDIIS--WNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVC 951

Query: 205  AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            + L  +  GE++    +R GF  +  V +A +D+++KC  +  +  VF+ I   D +  N
Sbjct: 952  SNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCN 1011

Query: 265  SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRR 321
            +M++ Y  HG    A  +F   +     P    +S +L+  S+L     G+Q+H  V++ 
Sbjct: 1012 AMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKS 1071

Query: 322  GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
            G+E D+ +A+SL+ +Y+K G +D A   F  +  +D++SWN++I     + +  +AL  F
Sbjct: 1072 GLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIF 1131

Query: 379  EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +++   G  PD +T   +L AC   G V  G  +FS M ++YG+ P +EHYAC+V++  R
Sbjct: 1132 KELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSR 1191

Query: 439  AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
             G + EA   IVE M  E S ++WG+LL AC ++G++   E  A+++ ELEP +   + +
Sbjct: 1192 GGKLKEAMD-IVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLV 1250

Query: 499  LIKIYGNAGRLDDVERVERMLVDRGL 524
            L + Y   GR + + RV R + ++G+
Sbjct: 1251 LAQAYEMRGRWESLVRVXRAMKEKGV 1276



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 187/411 (45%), Gaps = 78/411 (18%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE---P 192
           +A  G ++ A ++F++M  +   A  WNS+I GYA  G  ++A+ L+  +    +E    
Sbjct: 114 FAKEGNLEVARRLFNEMPWKNGIA--WNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCG 171

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK----- 247
           D F    V+ AC  LG +  G+++H   V     FD  + ++LV++Y KCGDI       
Sbjct: 172 DTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVL 231

Query: 248 --------------------------ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
                                     AR +F    N  ++ +NSM++GY+ +   +EA +
Sbjct: 232 NLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALE 291

Query: 282 IFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVE-------------- 324
           +F  M   G   D    +S+L+  S L I   G QVH  V + G                
Sbjct: 292 LFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYS 351

Query: 325 -----------------WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
                            +D  + NS+I VYS  G++D A  +FD MP K ++SWNS+I  
Sbjct: 352 KCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVG 411

Query: 368 HSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
            S++    EAL  F +M + G+  D  +   ++SACA + S+++GE++F+      G+  
Sbjct: 412 FSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFA-RATIIGLEF 470

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL--YACYLHG 473
                  +V+ Y + GL++    +    M+ +  P  W ++L  YA   HG
Sbjct: 471 DQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVP--WNSMLMGYATNGHG 519



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 172/342 (50%), Gaps = 31/342 (9%)

Query: 120  NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
            +++ KN    +  L+ +  FG ++ A  VFD+M  R   +  WN++ISGY   G ++DA 
Sbjct: 770  DIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVS--WNTMISGYVSFGLFDDAF 827

Query: 180  ALYFQMEEEGVEPDQFTFPRVL----KACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NA 234
              + +M++ G+ P  FT+  +L     AC        G+++H   +R G      V+ N+
Sbjct: 828  RFFSEMQKAGIRPSGFTYSTLLSFVSSACR-------GKQIHASMIRNGVDLSNVVVGNS 880

Query: 235  LVDMYAKCGDIVKARTVFDRIGNKDLISYNSML-----TGYIHHGLLVEAFDIFRGMILN 289
            L+ MY K G +  A  VF  +   D+IS+NS++     +GY    L +  F + R +   
Sbjct: 881  LIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGY--QNLALRQFVLMRSV--- 935

Query: 290  GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
            G+ PD   +S+++   +N   L  G Q+    +R G   +  ++++ I ++SK  +L+ +
Sbjct: 936  GYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDS 995

Query: 347  CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
              +F+ + Q D V  N++I +   H     AL  F    R+ + P   T   +LSA + L
Sbjct: 996  VRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSIL 1055

Query: 404  GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
              V  G ++ S++V K G+   V   + +V +Y + GLID A
Sbjct: 1056 LPVDQGSQIHSLVV-KSGLESDVIVASSLVEMYAKFGLIDSA 1096



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 83/400 (20%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           + +   + A  L +C    ++  G  LH L + + +L     I ++LL++Y+    + EA
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q+F++M  R  F+  WN++I GY + G    ++ L+  M  +                 
Sbjct: 62  QQLFEEMPKRNCFS--WNTMIEGYLKSGSKGKSLELFDSMPHK----------------- 102

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                                 D F  N ++  +AK G++  AR +F+ +  K+ I++NS
Sbjct: 103 ----------------------DAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNS 140

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSILA---NASLLRIGAQVHGWVL 319
           M+ GY  +G   EA  +F+ + LN    F  D   +++++    N   L  G Q+H  ++
Sbjct: 141 MIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIV 200

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD---------------------- 357
              VE+D  + +SL+ +Y K G +D A  + + M + D                      
Sbjct: 201 VDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARR 260

Query: 358 ---------VVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
                    VV WNS+I  +  ++   EAL  F  M R GV  D+ TF S+LSAC+ LG 
Sbjct: 261 IFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGI 320

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  G ++ +  V K G +  +   + +V++Y +    D+A
Sbjct: 321 IDQGIQVHA-HVYKVGFTNDIIIDSALVDMYSKCRRPDDA 359



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 157/301 (52%), Gaps = 14/301 (4%)

Query: 233  NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
            N  +  + + G++ +AR VFD +  +D++S+N+M++GY+  GL  +AF  F  M   G  
Sbjct: 780  NIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIR 839

Query: 293  PDPVAISSILANASLLRIGAQVHGWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFD 351
            P     S++L+  S    G Q+H  ++R GV+  ++ + NSLI +Y K G +D A  +F 
Sbjct: 840  PSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFI 899

Query: 352  HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
             M + D++SWNS+I +  K    + AL  F  M   G  PD  T  ++++ C++L  ++ 
Sbjct: 900  TMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEK 959

Query: 409  GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
            GE++F++ +    +S  +   A  ++L+ +   ++++  +  E  ++++  V+  A++ +
Sbjct: 960  GEQIFALCIRVGFLSNSIVSSAS-IDLFSKCNRLEDSVRVFEEIYQWDS--VLCNAMISS 1016

Query: 469  CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL----DDVERVERMLVDRGL 524
               HG    GE A Q       +N    E  + I  +A  +    D   ++  ++V  GL
Sbjct: 1017 YAWHG---FGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGL 1073

Query: 525  E 525
            E
Sbjct: 1074 E 1074



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 137/285 (48%), Gaps = 49/285 (17%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKA 248
           V+ D  +  R L +C   G I  G  +H+  ++ G       + N L+ MY++C  + +A
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
           + +F+ +  ++  S+N+M+ GY+  G   ++ ++F  M      P   A S         
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM------PHKDAFS--------- 106

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
                           W++ I+      ++K+G L+ A  LF+ MP K+ ++WNS+IH +
Sbjct: 107 ----------------WNVVISG-----FAKEGNLEVARRLFNEMPWKNGIAWNSMIHGY 145

Query: 369 S---KDHEALIYFEQMERDGV---LPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYG 421
           +   +  EA+  F+ +  + +     D     +++ AC +LG++  G+++ + ++V++  
Sbjct: 146 ACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVE 205

Query: 422 ISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWG 463
               +   + +VNLYG+ G ID A    +++ E   F  S ++ G
Sbjct: 206 FDSVLG--SSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISG 248



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +   + A ++  C  + ++E G ++        L  ++ IS+ L+  Y   GL++  
Sbjct: 432 GLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHG 491

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M        PWNS++ GYA  G   +A+ ++ QM   GV+P   TF  VL AC 
Sbjct: 492 RKLFDRMMKSD--EVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACD 549

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-DLIS 262
             GL+  G K    A++  +  +  +   + +VD+YA+ G +  A  + +++  K D   
Sbjct: 550 HCGLVEEGRK-WFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSM 608

Query: 263 YNSMLTGYIHHG 274
           ++S+L G + HG
Sbjct: 609 WSSVLRGCVAHG 620


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/503 (30%), Positives = 254/503 (50%), Gaps = 71/503 (14%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L +C    +   G K+H  +    L     +++ LL +YA  G +  A  VFD+M
Sbjct: 109 TLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRM 168

Query: 153 SNRTAFAF-----------------------------PWNSLISGYAELGEYEDAIALYF 183
             R   ++                              WNS+I+G  + G   +A+  + 
Sbjct: 169 KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 184 Q-MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
             +++  ++PD+F+    L ACA L  +  G+++H   VR  F   G V NAL+ MYAK 
Sbjct: 229 SILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKS 288

Query: 243 G---------------------------------DIVKARTVFDRIGNKDLISYNSMLTG 269
           G                                 DI  AR +F+ + + D++++ +M+ G
Sbjct: 289 GGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVG 348

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWD 326
           Y+ +GL  +A ++F+ M+  G  P+   ++++L+ +S    L  G Q+H   +R G    
Sbjct: 349 YVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALS 408

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHA---HSKDHEALIYFEQME 382
             + N+L  +Y+K G ++ A  +F+ + Q +D VSW S+I A   H    EA+  FEQM 
Sbjct: 409 PSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML 468

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ PDH+T+V +LSAC H G V+ G   F +M   + I P + HYACMV+L+GRAGL+
Sbjct: 469 TLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLL 528

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EAY   VE M  E   + WG+LL +C ++ NV + + AA++L  +EP+N   +  L  +
Sbjct: 529 QEAYK-FVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANV 587

Query: 503 YGNAGRLDDVERVERMLVDRGLE 525
           Y + G+ DD  ++ +++  RG++
Sbjct: 588 YSSCGKWDDAAKIRKLMKARGVK 610



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 208/439 (47%), Gaps = 87/439 (19%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  YA  G +++AHQVFD +  R + +  W ++I GY ++G +EDAI ++  M ++ V 
Sbjct: 47  ILSGYAKQGKLEKAHQVFDLIPVRDSVS--WTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P QFT   VL +CA  G   +G+KVH   V+ G      V N+L++MYAK GD+  A+ V
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 252 FDR-------------------------------IGNKDLISYNSMLTGYIHHGLLVEAF 280
           FDR                               +  +D++S+NSM+ G   HG   EA 
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 281 DIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
             F  ++ +    PD  +++S L   AN   L  G Q+HG+++R   +    + N+LI +
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 337 YSKDGKLD---------------------------------QACWLFDHMPQKDVVSWNS 363
           Y+K G ++                                  A  +F+ +   DVV+W +
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTA 344

Query: 364 IIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF-SVMVEK 419
           +I  + +   +++A+  F+ M  +G  P+  T  ++LSA + + S+  G+++  S +   
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
             +SP V +   +  +Y +AG I+ A   +   +      V W +++ A   HG   +GE
Sbjct: 405 EALSPSVGN--ALTTMYAKAGSINGARK-VFNLLRQNRDTVSWTSMIMALAQHG---LGE 458

Query: 480 TAAQKLFE------LEPDN 492
            A + LFE      ++PD+
Sbjct: 459 EAIE-LFEQMLTLGIKPDH 476



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 174/422 (41%), Gaps = 75/422 (17%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           NQ  F    LQ   SI++D        +     + AS L  C  L+ +  G ++H  I  
Sbjct: 215 NQHGFDNEALQFFSSILKD------TSLKPDRFSLASALSACANLEKLSFGKQIHGYIVR 268

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY---- 175
            +   +  + + L+ +YA  G ++ A ++ +Q          + +L++GY +LG+     
Sbjct: 269 TMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPAR 328

Query: 176 ---------------------------EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
                                       DAI ++  M  EG  P+ FT   +L A + + 
Sbjct: 329 QIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVT 388

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYNSML 267
            +  G+++H  A+R G      V NAL  MYAK G I  AR VF+ +  N+D +S+ SM+
Sbjct: 389 SLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMI 448

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDL 327
                HGL  EA ++F  M+  G  PD +    +L+        A  HG ++ +G  +  
Sbjct: 449 MALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS--------ACTHGGLVEQGRSYFD 500

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVL 387
            + N    V+  D  L     + D   +  ++             EA  + E M  +   
Sbjct: 501 LMKN----VHKIDPTLSHYACMVDLFGRAGLL------------QEAYKFVENMPME--- 541

Query: 388 PDHLTFVSLLSACAHLGSVKV----GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           PD + + SLLS+C    +V +     ERL  +     G       Y+ + N+Y   G  D
Sbjct: 542 PDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGA------YSALANVYSSCGKWD 595

Query: 444 EA 445
           +A
Sbjct: 596 DA 597



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 164/335 (48%), Gaps = 48/335 (14%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F  N ++  YAK G + KA  VFD I  +D +S+ +++ GY   G   +A  IF  M+ +
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD 101

Query: 290 GFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
              P    ++++LA+ +      IG +VH +V++ G+   + +ANSL+ +Y+K G L  A
Sbjct: 102 KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMA 161

Query: 347 CWLFDHM-------------------------------PQKDVVSWNSII---HAHSKDH 372
             +FD M                                ++D+VSWNS+I   + H  D+
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDN 221

Query: 373 EALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYA 430
           EAL +F  + +D  L PD  +  S LSACA+L  +  G+++   +V   +  S  V +  
Sbjct: 222 EALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN-- 279

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE-TAAQKLFE-L 488
            ++++Y ++G ++ A  +I +    +   + + AL     L+G V +G+ T A+++F  L
Sbjct: 280 ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTAL-----LNGYVKLGDITPARQIFNSL 334

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           +  +   +  +I  Y   G  +D   V + +V  G
Sbjct: 335 KDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEG 369



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 41/205 (20%)

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD------ 371
           +++ G+ + + + N+L+ +Y+K G    A  LF+ MP K   SWN+I+  ++K       
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 372 ----------------------------HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
                                        +A+  F  M +D VLP   T  ++L++CA  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           GS  +G+++ S +V K G+   V     ++N+Y + G +  A  ++ ++M+   +   W 
Sbjct: 121 GSRGIGKKVHSFVV-KLGLHACVPVANSLLNMYAKTGDLKMA-KVVFDRMKLRNTS-SWN 177

Query: 464 ALLYACYLHGNVCMGETAAQKLFEL 488
           A++    LH N C     A   FEL
Sbjct: 178 AMI---SLHMN-CGRVDLALAQFEL 198


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 246/442 (55%), Gaps = 13/442 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           V T   +SL  T Y    V  G ++H +   N L     +S+ L+ +Y+    ++EA ++
Sbjct: 223 VFTAVLSSLAATIY----VGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKM 278

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD   +R +    W+++++GY++ GE  +A+ L+ +M   G++P ++T   VL AC+ + 
Sbjct: 279 FDSSGDRNSIT--WSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDIC 336

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G+++H   ++ GF    F   ALVDMYAK G +  AR  FD +  +D+  + S+++
Sbjct: 337 YLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS 396

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDP-DPVAISSILANASL--LRIGAQVHGWVLRRGVEW 325
           GY+ +    EA  ++R M   G  P DP   S + A +SL  L +G QVHG  ++ G   
Sbjct: 397 GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGL 456

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           ++ I ++L  +YSK G L+    +F   P KDVVSWN++I   S +    EAL  FE+M 
Sbjct: 457 EVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEML 516

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
            +G+ PD +TFV+++SAC+H G V+ G   F++M ++ G+ P+V+HYACMV+L  RAG +
Sbjct: 517 AEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQL 576

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
            EA   I E    +    +W  LL AC  HG   +G  A +KL  L       +  L  I
Sbjct: 577 KEAKEFI-ESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGI 635

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           Y   GR+ DVERV + +   G+
Sbjct: 636 YTALGRMRDVERVWKHMRANGV 657



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 216/421 (51%), Gaps = 37/421 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A + +    L++   G + H L+       +  + + L+ +Y   GL+++  +VF  M
Sbjct: 120 TLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYM 179

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIA---LYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
             R    + W++++SGYA  G  E+AI    L+ + +EEG + D + F  VL + A    
Sbjct: 180 PERN--TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAATIY 236

Query: 210 IRVGEKVHLDAVRFGFGFDGFVL--NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           + +G ++H   ++   G  GFV   NALV MY+KC  + +A  +FD  G+++ I++++M+
Sbjct: 237 VGLGRQIHCITIK--NGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMV 294

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           TGY  +G  +EA  +F  M   G  P    I  +L   S    L  G Q+H ++L+ G E
Sbjct: 295 TGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFE 354

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQM 381
             L    +L+ +Y+K G L  A   FD + ++DV  W S+I  +   S + EALI + +M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
           +  G++P+  T  S+L AC+ L ++++G+++    + K+G    V   + +  +Y + G 
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTI-KHGFGLEVPIGSALSTMYSKCGS 473

Query: 442 IDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFE------LEPD 491
           +++        + F  +P    V W A++     +G    G+ A + LFE      +EPD
Sbjct: 474 LEDG------NLVFRRTPNKDVVSWNAMISGLSHNGQ---GDEALE-LFEEMLAEGMEPD 523

Query: 492 N 492
           +
Sbjct: 524 D 524



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 173/325 (53%), Gaps = 14/325 (4%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA---IALYFQMEEE 188
           L+  YA  G + +AH +F+ +  +   +  WNSLI+GY++ G    +   + L+ +M  +
Sbjct: 55  LVNFYAKCGKLAKAHSIFNAIICKDVVS--WNSLITGYSQNGGISSSYTVMQLFREMRAQ 112

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            + P+ +T   + KA + L    VG + H   V+     D +V  +LV MY K G +   
Sbjct: 113 DILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDG 172

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPDPV--AISSILA 303
             VF  +  ++  ++++M++GY   G + EA  +F   +     G D D V  A+ S LA
Sbjct: 173 LKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLA 232

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
               + +G Q+H   ++ G+   + ++N+L+ +YSK   L++AC +FD    ++ ++W++
Sbjct: 233 ATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSA 292

Query: 364 IIHAHSKDHEAL---IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           ++  +S++ E+L     F +M   G+ P   T V +L+AC+ +  ++ G++L S ++ K 
Sbjct: 293 MVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLL-KL 351

Query: 421 GISPRVEHYACMVNLYGRAGLIDEA 445
           G    +     +V++Y +AG + +A
Sbjct: 352 GFERHLFATTALVDMYAKAGCLADA 376



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T   +L  C  +  +E G +LH  +      ++   ++ L+ +YA  G + +A
Sbjct: 317 GIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADA 376

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + FD +  R      W SLISGY +  + E+A+ LY +M+  G+ P+  T   VLKAC+
Sbjct: 377 RKGFDCLQERDVAL--WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  + +G++VH   ++ GFG +  + +AL  MY+KCG +     VF R  NKD++S+N+
Sbjct: 435 SLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNA 494

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           M++G  H+G   EA ++F  M+  G +PD V   +I++  S
Sbjct: 495 MISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 134/266 (50%), Gaps = 16/266 (6%)

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH   +R G        N LV+ YAKCG + KA ++F+ I  KD++S+NS++TGY  
Sbjct: 33  GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92

Query: 273 HGLLVEAFDI---FRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWD 326
           +G +  ++ +   FR M      P+   ++ I    S L+   +G Q H  V++     D
Sbjct: 93  NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGD 152

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMER 383
           + +  SL+ +Y K G ++    +F +MP+++  +W++++  ++   +  EA+  F    R
Sbjct: 153 IYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR 212

Query: 384 ---DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
              +G   D++ F ++LS+ A    V +G ++  + + K G+   V     +V +Y +  
Sbjct: 213 EKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITI-KNGLLGFVALSNALVTMYSKCE 270

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALL 466
            ++EA  M       + + + W A++
Sbjct: 271 SLNEACKMF--DSSGDRNSITWSAMV 294


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 249/467 (53%), Gaps = 41/467 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +F  +L+   ++ A+  G++LH          +  + + L+ +YA  G I+ A  VFD+M
Sbjct: 116 SFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEM 175

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R      WN++I  Y   G  ++A  L+ +M++  V PD+     ++ AC   G +R 
Sbjct: 176 SQRDVVT--WNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 233

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYA-------------------------------K 241
              ++   +      D  +L ALV MYA                               K
Sbjct: 234 NRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSK 293

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
            G +  AR +FD+   KDL+ + +M++ Y       EA  +F  M  +G  PD V + S+
Sbjct: 294 AGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSV 353

Query: 302 LA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           ++   N   L     VH +    G+E  L I N+LI +Y+K G LD A  +F+ MP ++V
Sbjct: 354 ISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNV 413

Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSW+S+I+A   H +  ++L  F QM+++ V P+ +TFV +L  C+H G V+ G+++F+ 
Sbjct: 414 VSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 473

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M ++Y I+P++EHY CMV+L+GRA L+ EA   ++E M    + V+WG+L+ AC +HG +
Sbjct: 474 MTDEYNITPKIEHYGCMVDLFGRANLLREALE-VIESMPMAPNVVIWGSLMSACRVHGEL 532

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            +GE AA+++ +LEPD++    L+  IY    R D V R+ R ++++
Sbjct: 533 ELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYV-RIIRWIMEK 578



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 174/353 (49%), Gaps = 48/353 (13%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           +NSL+   +  GE    I  Y ++   G   D+ +FP +LKA + +  +  G ++H  A 
Sbjct: 82  FNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAF 141

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +     D FV   L+DMYA CG I  AR VFD +  +D++++N+M+  Y   GLL EAF 
Sbjct: 142 KIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFK 201

Query: 282 IFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWD------------ 326
           +F  M  +   PD + + +I++       +R    ++ +++   V  D            
Sbjct: 202 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYA 261

Query: 327 -------------------LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
                              L ++ +++  YSK G+LD A  +FD    KD+V W ++I A
Sbjct: 262 GAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISA 321

Query: 368 HSK-DH--EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---- 420
           +++ DH  EAL  FE+M   G+ PD +T +S++SAC +LG++   +      V +Y    
Sbjct: 322 YAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAK-----WVHRYTHLN 376

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G+   +     ++N+Y + G +D A   + EKM    + V W +++ A  +HG
Sbjct: 377 GLESVLPIDNALINMYAKCGGLDAARD-VFEKMPTR-NVVSWSSMINAFAMHG 427



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 23/255 (9%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            E    +GI     T  S++  C  L  ++    +HR    N L     I + L+ +YA 
Sbjct: 335 FEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAK 394

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D A  VF++M  R   +  W+S+I+ +A  GE  D+++L+ QM++E VEP++ TF 
Sbjct: 395 CGGLDAARDVFEKMPTRNVVS--WSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFV 452

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN-------ALVDMYAKCGDIVKARTV 251
            VL  C+  GL+  G+K+      F    D + +         +VD++ +   + +A  V
Sbjct: 453 GVLYGCSHSGLVEEGKKI------FASMTDEYNITPKIEHYGCMVDLFGRANLLREALEV 506

Query: 252 FDRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI 310
            + +    +++ + S+++    HG L E  ++    IL   +PD      +++N     I
Sbjct: 507 IESMPMAPNVVIWGSLMSACRVHGEL-ELGELAAKRILK-LEPDHDGALVLMSN-----I 559

Query: 311 GAQVHGWVLRRGVEW 325
            A+ + W   R + W
Sbjct: 560 YAREYRWDYVRIIRW 574


>gi|222629606|gb|EEE61738.1| hypothetical protein OsJ_16261 [Oryza sativa Japonica Group]
          Length = 767

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 235/417 (56%), Gaps = 10/417 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H          +  + S L+ ++   G +++A Q+F +M  +   +  WN+LI G+
Sbjct: 340 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVS--WNALIRGF 397

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            E G   DA+ L+  M +E + PD +T    LKAC  +G+    E +H   ++ G+  + 
Sbjct: 398 VERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEK 457

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY-IHHGLLVEAFDIFRGMIL 288
            V+ +L++ YAKC  +  AR ++D I   DL+S  ++++GY +      +A ++F  +  
Sbjct: 458 VVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHR 517

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G   D V +SS+L   A+ +  R G Q+H ++ ++    D+ + N+L+ +Y+K G+   
Sbjct: 518 KGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSD 577

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A   FD MP ++V+SW S+I A  ++    +A+  F +M  DGV P+ +TF+SLLSAC H
Sbjct: 578 AKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGH 637

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G    G   F+ M+ +YGI PR EHY+  ++L  R G +++A+  +V+K   + +  + 
Sbjct: 638 CGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWK-LVQKTNLKPNSSML 696

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           GA+L AC LHGN+ +GETAA+ LF ++P +  N+ +L  +Y      +D +R   ++
Sbjct: 697 GAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVI 753



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 187/380 (49%), Gaps = 36/380 (9%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W +++SGYA  G   +A+ L+  M   G  P+QFT+     ACAG G  R GE+VH  A 
Sbjct: 289 WTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAA 348

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  F  D FV +AL+DM+ +CG +  AR +F  +G KD++S+N+++ G++  G   +A  
Sbjct: 349 KGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALG 408

Query: 282 IFRGMILNGFDPDPVAISSILANASLLRIGAQV---HGWVLRRGVEWDLCIANSLIVVYS 338
           +F  M+     PD   + S L    ++ +   V   H  +++ G   +  +  SLI  Y+
Sbjct: 409 LFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYA 468

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH----EALIYFEQMERDGVLPDHLTFV 394
           K   +  A  ++D + + D+VS  ++I  ++ D     +A+  F ++ R G+  D +   
Sbjct: 469 KCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLS 528

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           S+L  CA + S + G ++ + M +K  +       A +V++Y +AG   +A      K  
Sbjct: 529 SVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNA-LVDMYAKAGEFSDA------KRA 581

Query: 455 FEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNA 506
           F+  P    + W +L+ AC  +G+   GE A      +  D    N+  F  L+   G+ 
Sbjct: 582 FDEMPYRNVISWTSLITACGRNGS---GEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHC 638

Query: 507 GRLDDVERVERMLVDRGLEF 526
           G           L ++G+E+
Sbjct: 639 G-----------LTNKGMEY 647



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 3/180 (1%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           + +    F  LL  C    A   G  +H R+   +    +  +S+KL+  YA FG +  A
Sbjct: 53  VELNLNIFRFLLLCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAA 112

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD M +R+  +  W +++SGYA  G   +A+ L+  M   G  P+QFT+     ACA
Sbjct: 113 RKVFDGMPHRSVVS--WTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACA 170

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G G  R GE+VH  A +  F  D FV +AL+DM+ +CG +  AR +F  +G KD+   +S
Sbjct: 171 GAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVCCISS 230



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANASLLRIGAQ 313
           ++ L+S+ +M++GY  +G   EA ++F  M  +G  P+       +S  A A   R G Q
Sbjct: 283 HRSLVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQ 342

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
           VH    +     D+ + ++L+ ++ + G ++ A  LF  M +KDVVSWN++I        
Sbjct: 343 VHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGH 402

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
           D +AL  F  M ++ ++PDH T  S L AC  +G V V   L    + K G         
Sbjct: 403 DGDALGLFSSMLKEAMIPDHYTLGSALKACGIVG-VAVNVELIHSCIIKLGYWDEKVVIG 461

Query: 431 CMVNLYGRAGLIDEA 445
            ++N Y +   +  A
Sbjct: 462 SLINSYAKCRSMSSA 476



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 20/230 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ +     +S+L  C  + +   G ++H  +       +  + + L+ +YA  G   
Sbjct: 517 RKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFS 576

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + FD+M  R   +  W SLI+     G  EDA+ L+ +M E+GV P+  TF  +L A
Sbjct: 577 DAKRAFDEMPYRNVIS--WTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSA 634

Query: 204 CAGLGLIRVGEKVHLDAV-RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           C   GL   G +     + R+G        ++ +D+ A+ G +  A   +  +   +L  
Sbjct: 635 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDA---WKLVQKTNLKP 691

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILN--------GFDPDPVAISSILAN 304
            +SML      G ++ A  +   M+L           DP      ++LAN
Sbjct: 692 NSSML------GAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLAN 735



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 7/180 (3%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLD-AVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           VE +   F  +L  C      R G+ VH   A       D  +   LV  YA+ GD+  A
Sbjct: 53  VELNLNIFRFLLLCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAA 112

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANA 305
           R VFD + ++ ++S+ +M++GY  +G   EA ++F  M  +G  P+       +S  A A
Sbjct: 113 RKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGA 172

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV---SWN 362
              R G QVH    +     D+ + ++L+ ++ + G ++ A  LF  M +KDV    SW 
Sbjct: 173 GCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVCCISSWQ 232



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 308 LRIGAQVHGWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            R G  VHG V        DL ++  L++ Y++ G +  A  +FD MP + VVSW +++ 
Sbjct: 73  FRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVS 132

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            ++++    EAL  F  M   G  P+  T+ S  SACA  G  + GE++ +   +     
Sbjct: 133 GYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAG 192

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVE 451
                 A M +++ R G +++A  +  E
Sbjct: 193 DMFVQSALM-DMHLRCGSVEDARQLFAE 219


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 235/436 (53%), Gaps = 9/436 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   LL    +L  V    +LH  I  +    N  + S L+  YA FGL+DEA   FD++
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+R      WN ++S YA  G    A  ++  M  EGV+ D FTF  ++ +C  LG   +
Sbjct: 240 SSRDLVL--WNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGL 297

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   +R  F  D  V +ALVDMY+K  +I  AR  FD +  K+++S+ +M  GY  
Sbjct: 298 GKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQ 357

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA---QVHGWVLRRGVEWDLCI 329
           HG   E   + + MI     PD +A++SIL++   L   +   QVH +V+  G E  L I
Sbjct: 358 HGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSI 417

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
           AN+L+  YSK G +  A   F  + + D++SW S++ A   H    + +  FE++    V
Sbjct: 418 ANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNV 477

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD + F+ +LSACAH G V  G   F++M+  Y I P  EHY  +++L GRAG +DEA 
Sbjct: 478 RPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAV 537

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           +++   M  E      GA L AC ++ NV +   A++KLF +EP+    + L+  +Y + 
Sbjct: 538 NLLTS-MPVEPRSDTLGAFLGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASV 596

Query: 507 GRLDDVERVERMLVDR 522
           G   DV RV +++ +R
Sbjct: 597 GHWFDVARVRKLMRER 612



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 229/479 (47%), Gaps = 40/479 (8%)

Query: 43  ITTFSSYPKSSPTPLLTNQKAF-------PKTKLQALDSIIQDLESSVQNGIT-----VQ 90
           I  F S+  +SPTP  T   A        P  +  +   +     S  + G T       
Sbjct: 12  IANFKSHSSASPTPSXTLTGATKNAPSHDPHRQSHSFPYLGXLRASLPETGFTXLVDSCS 71

Query: 91  TETFAS-LLETCYQLKAVEHGIKLH----RLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           T +F+S  L+   +L  +  G +LH    +L   NLL     + +++L +Y      ++ 
Sbjct: 72  THSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLS----LQNQVLHVYVKCKEFNDV 127

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA-----LYFQMEEEGVEPDQFTFPRV 200
            ++FD+M  +   +  WN+LI G  E G  + A+       + QM  E + P+  T   +
Sbjct: 128 CKMFDEMPLKNVVS--WNTLICGVVE-GNCKFALVRLGFHCFRQMVLEMMAPNCITLNGL 184

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L+A   L  + +  ++H   ++ GF  + FV +ALVD YAK G + +A++ FD + ++DL
Sbjct: 185 LRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDL 244

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGW 317
           + +N M++ Y  +G+  +AF +F+ M L G   D    +S++ +  +L    +G QVHG 
Sbjct: 245 VLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGL 304

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           ++R   + D+ +A++L+ +YSK+  ++ A   FD M  K++VSW ++      H    E 
Sbjct: 305 IIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEX 364

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +   ++M R    PD L   S+LS+C +L +     ++ + +VE  G    +     +V+
Sbjct: 365 MRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVEN-GFEAFLSIANALVS 423

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPD 491
            Y + G I  A+       E +   + W +L+ A   HG    G    +K+    + PD
Sbjct: 424 AYSKCGSIGSAFQSFSSVAEPDI--ISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPD 480


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 242/439 (55%), Gaps = 12/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SL ++C  L     G +LH          +  I + L+ +Y+  G +  A +VFD+M
Sbjct: 142 TFPSLFKSCGVLC---EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 198

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N++  +  W ++I  YA+     +AI L+ +ME   V+P++ T   VL ACA    +  
Sbjct: 199 VNKSVVS--WATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLET 256

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH      G GF   + +AL+D+Y KCG    AR +F+++  K+L  +N M+ G++ 
Sbjct: 257 AKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVE 316

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCI 329
                EA  +F  M L+G   D V ++S+L   +    L +G  +H ++ +  +E D+ +
Sbjct: 317 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVAL 376

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGV 386
             +L+ +Y+K G ++ A  +F  MP+KDV++W ++I   +   +  +AL  F +M+   V
Sbjct: 377 GTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEV 436

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TFV +L+AC+H G V  G   F+ M  KYGI P +EHY CMV++ GRAG I EA 
Sbjct: 437 KPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAE 496

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I + M       V   LL AC +HGN+ + E AAQ+L EL+P N   + LL  IY + 
Sbjct: 497 DLI-QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSM 555

Query: 507 GRLDDVERVERMLVDRGLE 525
              +  +++  ++V+R ++
Sbjct: 556 KNWEAAKKMRELMVERNIK 574



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 186/340 (54%), Gaps = 14/340 (4%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A  VF+Q+ N T F    NS+I GY        AI  Y  M  +G++PD+FTFP 
Sbjct: 88  GSLPYARLVFNQIPNPTTFT--CNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 145

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           + K+C   G++  G+++H  + + GF  D ++ N L++MY+ CG +V AR VFD++ NK 
Sbjct: 146 LFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 202

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           ++S+ +M+  Y    L  EA  +FR M +    P+ + + ++L   A +  L    QVH 
Sbjct: 203 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHK 262

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
           ++   G+ +   + ++L+ VY K G    A  LF+ MP+K++  WN +I+ H +D    E
Sbjct: 263 YIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEE 322

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F +M+  GV  D +T  SLL AC HLG++++G+ L  V +EK  I   V     +V
Sbjct: 323 ALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWL-HVYIEKEKIEVDVALGTALV 381

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++Y + G I+ A  +  E  E +   + W AL+    + G
Sbjct: 382 DMYAKCGSIESAMRVFQEMPEKDV--MTWTALIVGLAMCG 419



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 9/245 (3%)

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA--KCGDIVKARTVFDRIGNK 258
           L+ C  +  ++   ++H   +R     D F  + +V   A    G +  AR VF++I N 
Sbjct: 47  LEKCTTMSQLK---QIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318
              + NS++ GY +  L  +A   ++ M+L G DPD     S+  +  +L  G Q+H   
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHS 163

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEAL 375
            + G   D  I N+L+ +YS  G L  A  +FD M  K VVSW ++I A+++    HEA+
Sbjct: 164 TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAI 223

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F +ME   V P+ +T V++L+ACA    ++  +++    +++ GI       + ++++
Sbjct: 224 KLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKY-IDETGIGFHTVLTSALMDV 282

Query: 436 YGRAG 440
           Y + G
Sbjct: 283 YCKCG 287


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 245/446 (54%), Gaps = 18/446 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF   ++ C  +  ++   K+H L+    L  +  I S L+  Y  FGL++ A
Sbjct: 134 GVMPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHA 190

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              F+++  R      WN++++GYA++G++E  +  + +M +E V P +FT    L   A
Sbjct: 191 QVAFEELPIRDVVL--WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFA 248

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G +  G  +H  A++ G+     V N+L+DMY KC  I  A  +F+ +  KD+ S+NS
Sbjct: 249 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           +++ +   G       +   M+  G  PD V ++++L   S L     G ++HG+++  G
Sbjct: 309 IVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSG 368

Query: 323 VEW------DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           +        D+ + N++I +Y+K G +  A  +F+ M  KDV SWN +I     H   +E
Sbjct: 369 LGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNE 428

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F +M    + PD +TFV +LSAC+H G V  G      M  KY ++P +EHY C++
Sbjct: 429 ALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVI 488

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++ GRAG +DEAY + +  M  EA+PVVW ALL AC LH +  + E AAQ++FELEP++ 
Sbjct: 489 DMLGRAGQLDEAYELAL-TMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHC 547

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
            ++ L+  +YG  GR ++V  V   +
Sbjct: 548 GSYVLMSNVYGAVGRYEEVLEVRHTM 573



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 190/399 (47%), Gaps = 51/399 (12%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F +N++ISG+   G  E+    Y +M  EGV PD+FTFP  +KAC  L ++ + +K+H  
Sbjct: 105 FAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKAC--LDVLEI-KKIHGL 161

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
             +FG   D F+ +ALV+ Y K G +  A+  F+ +  +D++ +N+M+ GY   G     
Sbjct: 162 LFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMV 221

Query: 280 FDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            + FR M      P    ++   S+ A    L  G  +HG+ ++ G +  + ++NSLI +
Sbjct: 222 LETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDM 281

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DHEA-LIYFEQMERDGVLPDHLTF 393
           Y K   ++ A  +F+ M +KD+ SWNSI+  H +  DH+  L   ++M   G+ PD +T 
Sbjct: 282 YGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 341

Query: 394 VSLLSACAHLGSVKVGERLFSVMV------------------------EKYG-------- 421
            ++L AC+HL ++  G  +   M+                         K G        
Sbjct: 342 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 422 ----ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNV 475
                +  V  +  M+  YG  G  +EA  M     E +  P  V +  +L AC   G V
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461

Query: 476 CMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
             G     ++   +++ P  EH +  +I + G AG+LD+
Sbjct: 462 SQGRNFLVQMKSKYDVAPTIEH-YTCVIDMLGRAGQLDE 499



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 15/213 (7%)

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD----PVAISSILANASLLRIGAQV 314
           ++ ++N++++G+I +G   E F+ ++ M   G  PD    P AI + L    +L I  ++
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACL---DVLEI-KKI 158

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE- 373
           HG + + G+E D+ I ++L+  Y K G ++ A   F+ +P +DVV WN++++ +++  + 
Sbjct: 159 HGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQF 218

Query: 374 --ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
              L  F +M  + V+P   T    LS  A +G +  G R+      K G    V     
Sbjct: 219 EMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNG-RIIHGFAMKMGYDSGVAVSNS 277

Query: 432 MVNLYGRAGLIDEA---YSMIVEKMEFEASPVV 461
           ++++YG+   I++A   + M+ EK  F  + +V
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIV 310



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 8/147 (5%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSK 131
           D  ++ L+  +  GI     T  ++L  C  L A+ HG ++H  +I + L +  K I   
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 132 LLR-----LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
           LL+     +YA  G + +AH VF++MSN+   +  WN +I GY   G   +A+ ++ +M 
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVAS--WNIMIMGYGMHGYGNEALEMFSRMC 437

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVG 213
           E  ++PD+ TF  VL AC+  G +  G
Sbjct: 438 EVQLKPDEVTFVGVLSACSHAGFVSQG 464


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 143/469 (30%), Positives = 252/469 (53%), Gaps = 43/469 (9%)

Query: 63  AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL 122
           + P   LQ+ ++II     S   G+ +   + +     C  +K    G+++H L   +L 
Sbjct: 335 SLPNHNLQSYNAIIVGYARS-DKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLC 393

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           + N  +++ +L +Y   G + EA  VF++M +R A +  WN++I+ + + G  E  ++L+
Sbjct: 394 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS--WNAIIAAHEQNGNEEKTLSLF 451

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
                                            +H   ++   G D FV  AL+DMY+KC
Sbjct: 452 ---------------------------------IHNRIIKSRLGLDSFVGIALIDMYSKC 478

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G + KA  + DR+  + ++S+N++++G+       EA   F  M+  G DPD    ++IL
Sbjct: 479 GMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 538

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              AN   + +G Q+H  ++++ ++ D  I+++L+ +YSK G +     +F+  P +D V
Sbjct: 539 DTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV 598

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WN+++     H    EAL  FE M+ + V P+H TF+++L AC H+G V+ G   F  M
Sbjct: 599 TWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSM 658

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           +  YG+ P++EHY+C+V++ GR+G + +A  +I E M FEA  V+W  LL  C +HGNV 
Sbjct: 659 LSNYGLDPQLEHYSCVVDIMGRSGQVSKALELI-EGMPFEADAVIWRTLLSICKIHGNVE 717

Query: 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + E AA  + +LEP++   + LL  IY NAG  ++V ++ +M+   GL+
Sbjct: 718 VAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLK 766



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 211/442 (47%), Gaps = 34/442 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G      TFA +L++C  L+    GI++H L        +    S LL +YA    +D +
Sbjct: 169 GTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCS 228

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q F  M  +   +  W+++I+G  +  +    + L+ +M++ GV   Q TF  V ++CA
Sbjct: 229 IQFFHSMPEKNWVS--WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL  +R+G ++H  A++  FG D  +  A +DMY KC ++  A+ +F+ + N +L SYN+
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRG 322
           ++ GY                   G   D V++S      ++++    G QVHG  ++  
Sbjct: 347 IIVGYARSD--------------KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 392

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE-----ALIY 377
            + ++C+AN+++ +Y K G L +AC +F+ M  +D VSWN+II AH ++       +L  
Sbjct: 393 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFI 452

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             ++ +  +  D    ++L+   +  G ++  E+L   + E+  +S     +  +++ + 
Sbjct: 453 HNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVS-----WNAIISGFS 507

Query: 438 RAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLF--ELEPDNE 493
                +EA     + +E    P    +  +L  C     V +G+    ++   EL+ D  
Sbjct: 508 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD-A 566

Query: 494 HNFELLIKIYGNAGRLDDVERV 515
           +    L+ +Y   G + D + +
Sbjct: 567 YISSTLVDMYSKCGNMQDFQLI 588



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 167/346 (48%), Gaps = 27/346 (7%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G I  A ++FD M  R   +  WNSLISGY   G++   I ++ QM   G   D+ 
Sbjct: 118 YAGRGDIGVAQKLFDAMPERDVVS--WNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRT 175

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF  VLK+C+ L     G ++H  AV+ GF  D    +AL+DMYAKC  +  +   F  +
Sbjct: 176 TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
             K+ +S+++++ G + +  L    ++F+ M   G        +S+    A  S LR+G+
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
           Q+HG  L+     D+ I  + + +Y K   L  A  LF+ +P  ++ S+N+II  +++  
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +           G+  D ++      ACA    V  G+ L  + V    +    +   C+
Sbjct: 356 K-----------GLGLDEVSLSGAFRACA----VIKGD-LEGLQVHGLSMKSLCQSNICV 399

Query: 433 VN----LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            N    +YG+ G + EA  ++ E+M      V W A++ A   +GN
Sbjct: 400 ANAILDMYGKCGALVEA-CLVFEEM-VSRDAVSWNAIIAAHEQNGN 443



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 37/254 (14%)

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC------------- 242
           TF  + + C+    +  G++ H   +   F    FV N L+ MY KC             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 243 ------------------GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
                             GDI  A+ +FD +  +D++S+NS+++GY+H+G   +  D+F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 285 GMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M   G   D    + +L + S L     G Q+HG  ++ G + D+   ++L+ +Y+K  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLS 398
           KLD +   F  MP+K+ VSW++II    ++ +    L  F++M++ GV     TF S+  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 399 ACAHLGSVKVGERL 412
           +CA L ++++G +L
Sbjct: 284 SCAGLSALRLGSQL 297



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 38/320 (11%)

Query: 20  CGSKNKRSRKQRRQKQQQI-SRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQD 78
           CG   K  +   R  +Q + S N I +  S  K S       QK F K            
Sbjct: 478 CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEA----QKTFSKM----------- 522

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
               ++ G+     T+A++L+TC  L  VE G ++H  I    L+ +  ISS L+ +Y+ 
Sbjct: 523 ----LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSK 578

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G + +   +F++  NR      WN+++ GYA+ G  E+A+ ++  M+ E V+P+  TF 
Sbjct: 579 CGNMQDFQLIFEKAPNRDFVT--WNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFL 636

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG 256
            VL+AC  +GL+  G   +  ++   +G D  +   + +VD+  + G + KA  + + + 
Sbjct: 637 AVLRACGHMGLVEKGLH-YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMP 695

Query: 257 -NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA----ISSILANASL---- 307
              D + + ++L+    HG  VE  +     IL   +P+  A    +S+I ANA +    
Sbjct: 696 FEADAVIWRTLLSICKIHG-NVEVAEKAAYSILQ-LEPEDSAAYVLLSNIYANAGMWNEV 753

Query: 308 --LRIGAQVHGWVLRRGVEW 325
             LR   + +G     G  W
Sbjct: 754 TKLRKMMRFNGLKKEPGCSW 773



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 45/197 (22%)

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII----- 365
           G Q H  ++    +  + + N LI +Y K   L+ A  +FD MPQ+D VSWN+++     
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 366 ----------------------------HAHSKDHEALI-YFEQMERDGVLPDHLTFVSL 396
                                       + H+ DH  +I  F QM R G + D  TF  +
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L +C+ L     G ++  + V K G    V   + ++++Y +   +D +         F 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAV-KMGFDCDVVTGSALLDMYAKCKKLDCSIQF------FH 233

Query: 457 ASP----VVWGALLYAC 469
           + P    V W A++  C
Sbjct: 234 SMPEKNWVSWSAIIAGC 250


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 256/442 (57%), Gaps = 13/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF---GLIDEAHQVF 149
           T + ++  C ++  +  G + H L+  + L  +  +   L+ +YA     G +D+A +VF
Sbjct: 147 TLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVF 206

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           D+M      +  W ++I+GY + G  + +AI L+ +M +  V+P+ FTF  VLKACA L 
Sbjct: 207 DRMPVHNVMS--WTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLS 264

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            I +GE+V+   V+        V N+L+ MY++CG++  AR  FD +  K+L+SYN+++ 
Sbjct: 265 DIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVN 324

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEW 325
            Y       EAF++F  +   G   +    +S+L+ AS +     G Q+H  +L+ G + 
Sbjct: 325 AYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKS 384

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           +L I N+LI +YS+ G ++ A  +F+ M   +V+SW S+I   +K      AL  F +M 
Sbjct: 385 NLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKML 444

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             GV P+ +T++++LSAC+H+G +  G + F  M  ++GI PR+EHYAC+V+L GR+G +
Sbjct: 445 EAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHL 504

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
           +EA  + V  M F+A  +V    L AC +HGN+ +G+ AA+ + E +P +   + LL  +
Sbjct: 505 EEAMEL-VNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNL 563

Query: 503 YGNAGRLDDVERVERMLVDRGL 524
           + +AG+ ++V  + + + +R L
Sbjct: 564 HASAGQWEEVAEIRKKMKERNL 585



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 242/481 (50%), Gaps = 30/481 (6%)

Query: 59  TNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHG-IKLHRLI 117
            N+KAF     +A+ +    LE     G       F  +   C   + +  G I    L+
Sbjct: 19  NNEKAF-----EAISAFFDMLEC----GFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 118 PTNLLRKNKGISSKLLRLYAT-FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176
            T     +  +   L+ ++    G ++ A++VFD+M +R      W  +I+ + +LG   
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVT--WTLMITRFQQLGFSR 127

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           DA+ L+  M   G  PD+FT   V+ ACA +GL+ +G + H   ++ G   D  V  +LV
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 237 DMYAKC---GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL-VEAFDIFRGMILNGFD 292
           DMYAKC   G +  AR VFDR+   +++S+ +++TGY+  G    EA ++F  M+     
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK 247

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P+    SS+L   AN S + +G QV+  V++  +    C+ NSLI +YS+ G ++ A   
Sbjct: 248 PNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKA 307

Query: 350 FDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD + +K++VS+N+I++A++K     EA   F ++E  G   +  TF SLLS  + +G++
Sbjct: 308 FDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAI 367

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             GE++ S ++ K G    +     ++++Y R G I+ A+ +  E    + + + W +++
Sbjct: 368 GKGEQIHSRIL-KSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG--DGNVISWTSMI 424

Query: 467 YACYLHGNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDD-VERVERMLVDRG 523
                HG          K+ E  + P NE  +  ++    + G + + ++  + M V+ G
Sbjct: 425 TGFAKHGFATRALETFHKMLEAGVSP-NEVTYIAVLSACSHVGLISEGLKHFKSMKVEHG 483

Query: 524 L 524
           +
Sbjct: 484 I 484



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 181/311 (58%), Gaps = 24/311 (7%)

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            W++LIS YA   +  +AI+ +F M E G  P+++ F  V +AC+    I +G+ +    
Sbjct: 9   SWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFL 68

Query: 221 VRFG-FGFDGFVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
           ++ G F  D  V  AL+DM+ K  GD+  A  VFDR+ +++++++  M+T +   G   +
Sbjct: 69  LKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRD 128

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A D+F  M+L+G+ PD   +S ++   A   LL +G Q H  V++ G++ D+C+  SL+ 
Sbjct: 129 AVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVD 188

Query: 336 VYSK---DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQMERDGVLP 388
           +Y+K   DG +D A  +FD MP  +V+SW +II  + +    D EA+  F +M +  V P
Sbjct: 189 MYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKP 248

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC----MVNLYGRAGLID- 443
           +H TF S+L ACA+L  + +GE++++++V+      R+    C    ++++Y R G ++ 
Sbjct: 249 NHFTFSSVLKACANLSDIWLGEQVYALVVKM-----RLASINCVGNSLISMYSRCGNMEN 303

Query: 444 --EAYSMIVEK 452
             +A+ ++ EK
Sbjct: 304 ARKAFDVLFEK 314



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 180/382 (47%), Gaps = 52/382 (13%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           VQ  +     TF+S+L+ C  L  +  G +++ L+    L     + + L+ +Y+  G +
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNM 301

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A + FD +  +   ++  N++++ YA+    E+A  L+ ++E  G   + FTF  +L 
Sbjct: 302 ENARKAFDVLFEKNLVSY--NTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLS 359

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
             + +G I  GE++H   ++ GF  +  + NAL+ MY++CG+I  A  VF+ +G+ ++IS
Sbjct: 360 GASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVIS 419

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ------ 313
           + SM+TG+  HG    A + F  M+  G  P+ V   ++L+  S   L+  G +      
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMK 479

Query: 314 -VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
             HG V R  +E   C+ + L     + G L++A  L + MP K                
Sbjct: 480 VEHGIVPR--MEHYACVVDLL----GRSGHLEEAMELVNSMPFK---------------- 517

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
                           D L   + L AC   G++ +G+    +++E+    P    Y  +
Sbjct: 518 ---------------ADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAA--YILL 560

Query: 433 VNLYGRAGLIDEAYSMIVEKME 454
            NL+  AG  +E  + I +KM+
Sbjct: 561 SNLHASAGQWEEV-AEIRKKMK 581


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 155/440 (35%), Positives = 240/440 (54%), Gaps = 12/440 (2%)

Query: 93  TFASLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           TF ++L  C +  A        +H L+ +        + + L+  Y   G    A +VF 
Sbjct: 123 TFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH 182

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M+ +      W ++ISG A    Y+++ +L+ QM    V+ +  T+   L ACA     
Sbjct: 183 GMAEKNVI--TWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCTLLACARSLAA 239

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R G++VH   V+ GF  D  V + L+D+Y+KCG +  A TVF      D +    +L G+
Sbjct: 240 REGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGF 299

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDL 327
             +GL  +AF++F  M+  G + D   +S++L     ++   +G Q+H  V++R    + 
Sbjct: 300 AQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNT 359

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + N L+ +YSK G+L ++  +FD MP K+ VSWNSII A   H    E    FE M+ D
Sbjct: 360 YVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKAD 419

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  P  +TF+SLL AC+H+GS K G  + + M  +YG+ PR+EHYAC+V++ GRAGL+D+
Sbjct: 420 GAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDD 479

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A S I E   F  S ++W AL+ AC  HGN  +G+ AA+KL  L+P     + LL  IY 
Sbjct: 480 AKSFI-EDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIYS 538

Query: 505 NAGRLDDVERVERMLVDRGL 524
           + GR DD  +V + + + GL
Sbjct: 539 SEGRWDDRAKVMKRMSEMGL 558



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 197/404 (48%), Gaps = 35/404 (8%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTN-----------LLRKNKGISSKLLRLYATFGLI 142
           F+ LL +C +   +  G  LH  +  N            LR      + L+ +YA  G  
Sbjct: 14  FSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYARCGRR 73

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVL 201
           ++A +VFD+M  R A +  WNSLI+     G   DA+AL+ +M   +    D+ TF  VL
Sbjct: 74  EDAARVFDEMRVRDAVS--WNSLIAASRGAG---DALALFRRMLRSDARACDRATFTTVL 128

Query: 202 KAC--AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
             C  AG   +     VH   V  GF  +  V NALV  Y +CG    A  VF  +  K+
Sbjct: 129 SECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKN 188

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS-SILANASLL--RIGAQVHG 316
           +I++ +M++G     L  E+F +F G ++   D +    S ++LA A  L  R G QVHG
Sbjct: 189 VITWTAMISGMARAELYKESFSLF-GQMIRTVDANNATYSCTLLACARSLAAREGQQVHG 247

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHE 373
            V++ G E DL + + L+ VYSK G ++ A  +F    + D V    I+   ++   + +
Sbjct: 248 LVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEK 307

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYAC- 431
           A   F +M   G   D  T  ++L A        +G+++ ++++++ +G++     Y C 
Sbjct: 308 AFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNT----YVCN 363

Query: 432 -MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            +VN+Y + G + E+   + ++M  + S V W +++ A   HG+
Sbjct: 364 GLVNMYSKCGELRESV-QVFDEMPSKNS-VSWNSIIAAFARHGH 405


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 245/431 (56%), Gaps = 9/431 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +L+ C +  AV      H  I    L  +  + + L+  Y+  G ++ A QVFD M  R+
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN++I  Y       +A+ ++ +M  EG +  +FT   VL AC         +K+
Sbjct: 119 LVS--WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 176

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  +V+     + +V  AL+D+YAKCG I  A  VF+ + +K  ++++SM+ GY+ +   
Sbjct: 177 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 236

Query: 277 VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
            EA  ++R       + +   +SS++   +N + L  G Q+H  + + G   ++ +A+S 
Sbjct: 237 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSA 296

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           + +Y+K G L ++  +F  + +K++  WN+II     H++  E +I FE+M++DG+ P+ 
Sbjct: 297 VDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 356

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TF SLLS C H G V+ G R F +M   YG+SP V HY+CMV++ GRAGL+ EAY +I 
Sbjct: 357 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI- 415

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + + F+ +  +WG+LL +C ++ N+ + E AA+KLFELEP+N  N  LL  IY    + +
Sbjct: 416 KSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWE 475

Query: 511 DVERVERMLVD 521
           ++ +  ++L D
Sbjct: 476 EIAKSRKLLRD 486



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 93  TFASLLETC-YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T +S+L  C     A+E   KLH L     +  N  + + LL LYA  G+I +A QVF+ 
Sbjct: 156 TISSVLSACGVNCDALECK-KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 214

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M ++++    W+S+++GY +   YE+A+ LY + +   +E +QFT   V+ AC+ L  + 
Sbjct: 215 MQDKSSVT--WSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI 272

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H    + GFG + FV ++ VDMYAKCG + ++  +F  +  K+L  +N++++G+ 
Sbjct: 273 EGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFA 332

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            H    E   +F  M  +G  P+ V  SS+L+
Sbjct: 333 KHARPKEVMILFEKMQQDGMHPNEVTFSSLLS 364


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 245/458 (53%), Gaps = 13/458 (2%)

Query: 78  DLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
           DL   ++NG  T    T  S+ +   +L  V  G ++        +  N  + + L+ +Y
Sbjct: 254 DLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMY 313

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           +  G + +A  VFD          PWN++ISGY++ G  ++A+ LY QM + G+  D +T
Sbjct: 314 SKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYT 373

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL---NALVDMYAKCGDIVKARTVFD 253
           +  V  A A    ++ G  VH   +    G D  V+   NA+ D Y+KCG +   R VFD
Sbjct: 374 YCSVFNAIAASKSLQFGRVVH--GMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFD 431

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
           R+  +D++S+ +++T Y    L  EA   F  M   GF P+    SS+L   A+   L  
Sbjct: 432 RMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 491

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G QVHG + + G++ + CI ++LI +Y+K G + +A  +FD +   D+VSW +II  +++
Sbjct: 492 GRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQ 551

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                +AL  F +ME  G+  + +T + +L AC+H G V+ G   F  M + YG+ P +E
Sbjct: 552 HGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEME 611

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HYAC+++L GR G +D+A   I  KM  E + +VW  LL  C +HGNV +GE AA+K+  
Sbjct: 612 HYACIIDLLGRVGRLDDAMEFI-RKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILS 670

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + P+    + LL   Y   G  +D   +  ++ D+G++
Sbjct: 671 IRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVK 708



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 239/482 (49%), Gaps = 50/482 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +GI      +++++++C  L ++E G  +H  I       +  +S+ LL +YA  G I
Sbjct: 159 LNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI 218

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++++ VF+ M+     +  WN++ISG    G + +A  L+ +M+     P+ +T   V K
Sbjct: 219 EDSYWVFNMMTEHNQVS--WNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSK 276

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR--IGNKDL 260
           A   L  + +G++V   A   G   +  V  AL+DMY+KCG +  AR+VFD   I     
Sbjct: 277 AVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVN 336

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGW 317
             +N+M++GY   G   EA +++  M  NG   D     S+   +A +  L+ G  VHG 
Sbjct: 337 TPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGM 396

Query: 318 VLRRGVEWDLCIANSLIV-VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
           VL+ G++  +   N+ I   YSK G L+    +FD M ++D+VSW +++ A+S+     E
Sbjct: 397 VLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEE 456

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF---------------SVMVE 418
           AL  F  M  +G  P+  TF S+L +CA L  ++ G ++                S +++
Sbjct: 457 ALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALID 516

Query: 419 KYG---------------ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EASPV 460
            Y                 +P +  +  +++ Y + GL+++A  +   +ME    +A+ V
Sbjct: 517 MYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLF-RRMELSGIKANAV 575

Query: 461 VWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD-VERVE 516
               +L+AC   G V  G    Q++   + + P+ EH +  +I + G  GRLDD +E + 
Sbjct: 576 TLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEH-YACIIDLLGRVGRLDDAMEFIR 634

Query: 517 RM 518
           +M
Sbjct: 635 KM 636



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 197/404 (48%), Gaps = 19/404 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLI-PTNLLRKNKGI-SSKLLRLYATFGLIDEAH 146
            Q +    +L  C +  ++     +H L+  +N   K+  +  +    +Y+       A 
Sbjct: 62  TQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAAC 121

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            VFD+M  R  F+  W  +I G  E G + D    + +M   G+ PD+F +  ++++C G
Sbjct: 122 GVFDEMPQRNVFS--WTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 179

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L  + +G+ VH   V  GF    FV  +L++MYAK G I  +  VF+ +   + +S+N+M
Sbjct: 180 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAM 239

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGV 323
           ++G   +GL +EAFD+F  M      P+    V++S  +     + +G +V       G+
Sbjct: 240 ISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGI 299

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS--WNSIIHAHSK---DHEALIYF 378
           E ++ +  +LI +YSK G L  A  +FD       V+  WN++I  +S+     EAL  +
Sbjct: 300 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 359

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYG 437
            QM ++G+  D  T+ S+ +A A   S++ G R+   MV K G+   V      + + Y 
Sbjct: 360 VQMCQNGITSDLYTYCSVFNAIAASKSLQFG-RVVHGMVLKCGLDLMVVSVNNAIADAYS 418

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + G +++    + ++ME E   V W  L+ A   +    +GE A
Sbjct: 419 KCGFLEDVRK-VFDRME-ERDIVSWTTLVTA---YSQSSLGEEA 457


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 235/417 (56%), Gaps = 10/417 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H          +  + S L+ ++   G +++A Q+F +M  +   +  WN+LI G+
Sbjct: 132 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVS--WNALIRGF 189

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            E G   DA+ L+  M +E + PD +T    LKAC  +G+    E +H   ++ G+  + 
Sbjct: 190 VERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEK 249

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY-IHHGLLVEAFDIFRGMIL 288
            V+ +L++ YAKC  +  AR ++D I   DL+S  ++++GY +      +A ++F  +  
Sbjct: 250 VVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHR 309

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G   D V +SS+L   A+ +  R G Q+H ++ ++    D+ + N+L+ +Y+K G+   
Sbjct: 310 KGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSD 369

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A   FD MP ++V+SW S+I A  ++    +A+  F +M  DGV P+ +TF+SLLSAC H
Sbjct: 370 AKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGH 429

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G    G   F+ M+ +YGI PR EHY+  ++L  R G +++A+  +V+K   + +  + 
Sbjct: 430 CGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWK-LVQKTNLKPNSSML 488

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           GA+L AC LHGN+ +GETAA+ LF ++P +  N+ +L  +Y      +D +R   ++
Sbjct: 489 GAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVI 545



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 223/449 (49%), Gaps = 39/449 (8%)

Query: 94  FASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++SLL+ C    A   G  +H R+   +    +  +S+KL+  YA FG +  A ++FD M
Sbjct: 14  YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKMFDGM 73

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R+  +  W +++SGYA  G   +A+ L+  M   G  P+QFT+     ACAG G  R 
Sbjct: 74  PHRSVVS--WTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARS 131

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE+VH  A +  F  D FV +AL+DM+ +CG +  AR +F  +G KD++S+N+++ G++ 
Sbjct: 132 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVE 191

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV---HGWVLRRGVEWDLCI 329
            G   +A  +F  M+     PD   + S L    ++ +   V   H  +++ G   +  +
Sbjct: 192 RGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVV 251

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH----EALIYFEQMERDG 385
             SLI  Y+K   +  A  ++D + + D+VS  ++I  ++ D     +A+  F ++ R G
Sbjct: 252 IGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKG 311

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  D +   S+L  CA + S + G ++ + M +K  +       A +V++Y +AG   +A
Sbjct: 312 LWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNA-LVDMYAKAGEFSDA 370

Query: 446 YSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFE 497
                 K  F+  P    + W +L+ AC  +G+   GE A      +  D    N+  F 
Sbjct: 371 ------KRAFDEMPYRNVISWTSLITACGRNGS---GEDAVTLFNRMVEDGVRPNDVTFL 421

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLEF 526
            L+   G+ G           L ++G+E+
Sbjct: 422 SLLSACGHCG-----------LTNKGMEY 439



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 20/230 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ +     +S+L  C  + +   G ++H  +       +  + + L+ +YA  G   
Sbjct: 309 RKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFS 368

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + FD+M  R   +  W SLI+     G  EDA+ L+ +M E+GV P+  TF  +L A
Sbjct: 369 DAKRAFDEMPYRNVIS--WTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSA 426

Query: 204 CAGLGLIRVGEKVHLDAV-RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           C   GL   G +     + R+G        ++ +D+ A+ G +  A   +  +   +L  
Sbjct: 427 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDA---WKLVQKTNLKP 483

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILN--------GFDPDPVAISSILAN 304
            +SML      G ++ A  +   M+L           DP      ++LAN
Sbjct: 484 NSSML------GAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLAN 527


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 138/402 (34%), Positives = 231/402 (57%), Gaps = 10/402 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S LL +Y+  G + +A +VFD M  +   A  W+++++G+   G   +A+ +Y +M E
Sbjct: 148 VCSALLHVYSRCGAMGDAIRVFDGMPRKDHVA--WSTMVAGFVSAGRPVEALGMYSRMRE 205

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV  D+     V++AC   G  R+G  VH   +R G   D  +  +LVDMYAK G    
Sbjct: 206 HGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDV 265

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR VF  +  ++ +S+N++++G+  +G   EA D+FR M  +G  PD  A+ S L   A+
Sbjct: 266 ARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACAD 325

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L++G  +HG++LRR +E+   +  +++ +YSK G L+ A  LF+ +  +D+V WN++
Sbjct: 326 VGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAM 384

Query: 365 IH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H   H+AL  F+++   G+ PDH TF SLLSA +H G V+ G+  F  M+ ++G
Sbjct: 385 IACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFG 444

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P  +H  C+V+L  R+GL++EA  M+   M  E +  +W ALL  C  +  + +GET 
Sbjct: 445 IEPTEKHCVCVVDLLARSGLVEEANEMLAS-MHTEPTIPIWVALLSGCLNNKKLELGETI 503

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           A+K+ E +P++     L+  +Y  A + D V  + +++ D G
Sbjct: 504 AKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSG 545



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 220/430 (51%), Gaps = 32/430 (7%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH L+   ++  ++ +   L   YA  G +D A        +  +    WN+L++  + 
Sbjct: 33  RLHALL---VVSSSQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSR 89

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G    A+ + F+       PD  TF   L ACA LG +   E V + A   G+G D FV
Sbjct: 90  AGSPGAALRV-FRALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFV 148

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            +AL+ +Y++CG +  A  VFD +  KD +++++M+ G++  G  VEA  ++  M  +G 
Sbjct: 149 CSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGV 208

Query: 292 DPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             D V +  ++   +L    R+GA VHG  LR G+  D+ IA SL+ +Y+K+G  D A  
Sbjct: 209 AEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQ 268

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F  MP ++ VSWN++I   +++    EAL  F +M   G+ PD    VS L ACA +G 
Sbjct: 269 VFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGF 328

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACM-----VNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +K+G+ +       +G   R   + C+     +++Y + G ++ A  +  +    +   V
Sbjct: 329 LKLGKSI-------HGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDL--V 379

Query: 461 VWGALLYACYLHGNVCMGETAA--QKLFE--LEPDNEHNFELLIKIYGNAGRLDDVE-RV 515
           +W A++  C  HG  C  +  A  Q+L E  ++PD+   F  L+    ++G +++ +   
Sbjct: 380 LWNAMIACCGTHG--CGHDALALFQELNETGIKPDHA-TFASLLSALSHSGLVEEGKFWF 436

Query: 516 ERMLVDRGLE 525
           +RM+ + G+E
Sbjct: 437 DRMITEFGIE 446



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 30/335 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+         +++ C        G  +H     + +R +  I++ L+ +YA  G  D
Sbjct: 205 EHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFD 264

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A QVF  M  R A +  WN+LISG+A+ G  ++A+ L+ +M   G++PD       L A
Sbjct: 265 VARQVFRMMPYRNAVS--WNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLA 322

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +G +++G+ +H   +R    F   +  A++DMY+KCG +  AR +F+++ ++DL+ +
Sbjct: 323 CADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLW 381

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N+M+     HG   +A  +F+ +   G  PD    +S+L+  S        H  ++  G 
Sbjct: 382 NAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS--------HSGLVEEGK 433

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
            W     + +I  +  +        + D + +  +V             EA      M  
Sbjct: 434 FW----FDRMITEFGIEPTEKHCVCVVDLLARSGLV------------EEANEMLASMHT 477

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           +  +P    +V+LLS C +   +++GE +   ++E
Sbjct: 478 EPTIP---IWVALLSGCLNNKKLELGETIAKKILE 509


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 147/400 (36%), Positives = 231/400 (57%), Gaps = 14/400 (3%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +Y  FGL+ +A  VFD+M +R   +  W ++IS Y+     + A+     M  EGV 
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVS--WTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+ FT+  VL+AC GL  +R   ++H   ++ G   D FV +AL+D+Y++ G++  A  V
Sbjct: 64  PNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           FD +   DL+ ++S++ G+  +    EA  +F+ M   GF      ++S+L      +LL
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +G QVH  VL+   + DL + N+L+ +Y K G L+ A  +F  M +KDV+SW+++I   
Sbjct: 181 ELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 369 SKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           +++    EAL  FE M+  G+ P+++T V +L AC+H G V+ G   F  M E +GI P 
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPG 298

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
            EHY CM++L GRAG + EA  +I E ME E   V W ALL AC +H NV +   AA+++
Sbjct: 299 REHYGCMIDLLGRAGRLSEAVDLINE-MECEPDAVTWRALLNACRVHRNVDVAIHAAKQI 357

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L+P +   + LL  IY N  R +DV  V R + +RG++
Sbjct: 358 LRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIK 397



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 167/328 (50%), Gaps = 14/328 (4%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
            F   P  +     T   A+   KL   D  ++ L   ++ G+     T++S+L  C  L
Sbjct: 22  VFDKMPDRNVVSWTTMISAYSAAKLN--DKALEFLVLMLREGVRPNMFTYSSVLRACDGL 79

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
             +    +LH  I    L  +  + S L+ +Y+ +G ++ A +VFD+M   T     W+S
Sbjct: 80  FNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMV--TGDLVVWSS 134

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I+G+A+  + ++A+ L+ +M+  G    Q T   VL+AC GL L+ +G +VH+  ++  
Sbjct: 135 IIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK-- 192

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           +  D  + NAL+DMY KCG +  A  VF R+  KD+IS+++M+ G   +G   EA  +F 
Sbjct: 193 YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFE 252

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGA-QVHGWVLRRGVEWDLCIANSLIVVYSKD 340
            M + G  P+ V I  +L   ++A L+  G    H      G++        +I +  + 
Sbjct: 253 SMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRA 312

Query: 341 GKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           G+L +A  L + M  + D V+W ++++A
Sbjct: 313 GRLSEAVDLINEMECEPDAVTWRALLNA 340



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 162/321 (50%), Gaps = 43/321 (13%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F++N L++MY K G +  A+ VFD++ +++++S+ +M++ Y    L  +A +    M+  
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           G  P+    SS+L     L    Q+H  +++ G++ D+ + ++LI VYS+ G+L+ A  +
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD M   D+V W+SII     +S   EAL  F++M+R G L    T  S+L AC  L  +
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME------------ 454
           ++G R   V V KY     + +   ++++Y + G +++A ++ V  +E            
Sbjct: 181 ELG-RQVHVHVLKYDQDLILNN--ALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237

Query: 455 -------------FEASPVVW--------GALLYACYLHGNVCMGET---AAQKLFELEP 490
                        FE+  V+           +L+AC   G V  G     + ++LF ++P
Sbjct: 238 LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDP 297

Query: 491 DNEHNFELLIKIYGNAGRLDD 511
             EH +  +I + G AGRL +
Sbjct: 298 GREH-YGCMIDLLGRAGRLSE 317


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 249/490 (50%), Gaps = 60/490 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  ++L  C  LKAV    ++H     N    +  + + L+  YA  GL++ A +VF+ M
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--------------------- 191
             +   +  WN++++GY++ G +E A  L+  M +E +                      
Sbjct: 327 EFKDVVS--WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 384

Query: 192 --------------PDQFTFPRVLKACAGLGLIRVGEKVH----------LDAVRFGFGF 227
                         P+  T   VL ACA LG    G ++H          LD    G   
Sbjct: 385 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 444

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
           D  V NAL+DMY+KC     AR++FD I    ++++++  M+ G+  +G   +A  +F  
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 504

Query: 286 MILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLR--RGVEWDLCIANSLIVVYS 338
           MI    G  P+   IS IL   A+ + +RIG Q+H +VLR  R       +AN LI +YS
Sbjct: 505 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYS 564

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G +D A  +FD M QK  +SW S++     H +  EAL  F++M + G +PD +TF+ 
Sbjct: 565 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 624

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L AC+H G V  G   F  M   YG++PR EHYAC ++L  R+G +D+A+   V+ M  
Sbjct: 625 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWR-TVKDMPM 683

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           E + VVW ALL AC +H NV + E A  KL E+  +N+ ++ L+  IY  AGR  DV R+
Sbjct: 684 EPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARI 743

Query: 516 ERMLVDRGLE 525
             ++   G++
Sbjct: 744 RHLMKKSGIK 753



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 146/545 (26%), Positives = 241/545 (44%), Gaps = 100/545 (18%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LDS I      ++ G      T   +L+ C +L +   G   H LI  N    N  I + 
Sbjct: 136 LDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNA 195

Query: 132 LLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQM----- 185
           L+ +Y+  G ++EA  +FD+++ R       WNS++S + +      A+ L+ +M     
Sbjct: 196 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 255

Query: 186 -EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
            +      D  +   +L AC  L  +   ++VH +A+R G   D FV NAL+D YAKCG 
Sbjct: 256 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGL 315

Query: 245 IVKARTVFDRIGNKDLISYNSM-----------------------------------LTG 269
           +  A  VF+ +  KD++S+N+M                                   + G
Sbjct: 316 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAG 375

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRR----- 321
           Y   G   EA ++FR MI +G  P+ V I S+L A ASL     G ++H + L+      
Sbjct: 376 YSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTL 435

Query: 322 -----GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSK---D 371
                G + DL + N+LI +YSK      A  +FD +P  +++VV+W  +I  H++    
Sbjct: 436 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 495

Query: 372 HEALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           ++AL  F +M  E  GV P+  T   +L ACAHL ++++G+++ + ++  +         
Sbjct: 496 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV 555

Query: 430 A-CMVNLYGRAGLIDEA---------------------YSM---------IVEKME---F 455
           A C++++Y + G +D A                     Y M         I +KM    F
Sbjct: 556 ANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGF 615

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDV 512
               + +  +LYAC   G V  G +    +   + L P  EH +   I +   +GRLD  
Sbjct: 616 VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEH-YACAIDLLARSGRLDKA 674

Query: 513 ERVER 517
            R  +
Sbjct: 675 WRTVK 679



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 175/397 (44%), Gaps = 75/397 (18%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLI--------------------PTNLLRKN 125
           G+ V    FASLL+ C     V    ++H+ I                    P+      
Sbjct: 32  GVDVYPSHFASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 88

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
           + + + ++  Y   G  D A  V ++++   A    WN LI  + + G  + AI +  +M
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSPAVW--WNLLIREHIKQGRLDSAINVSCRM 146

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
              G  PD FT P VLKAC  L   R G   H      GF  + F+ NALV MY++CG +
Sbjct: 147 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 206

Query: 246 VKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL------NGFDPDPV 296
            +A  +FD I   G  D+IS+NS+++ ++       A D+F  M L           D +
Sbjct: 207 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 266

Query: 297 AISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
           +I +IL     L+   Q   VHG  +R G   D+ + N+LI  Y+K G ++ A  +F+ M
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 354 PQKDVVSWNSIIHAHSK--------------------------------------DHEAL 375
             KDVVSWN+++  +S+                                       HEAL
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
             F QM   G LP+ +T +S+LSACA LG+   G  +
Sbjct: 387 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 423


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 146/405 (36%), Positives = 229/405 (56%), Gaps = 15/405 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL-GEYEDAIALYFQME 186
           +S+ L+ +YA FGL+D+A ++FD+M  R      W ++++  A   G  E+A+     M 
Sbjct: 117 VSNSLVSMYAKFGLLDDALRLFDRMPERNVVT--WTTVVAALANADGRKEEALRFLVAMW 174

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            +GV P+ +TF  VL AC   G++     +H   V+ G   D FV ++L+D Y K GD+ 
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLD 231

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
             R VFD +  +DL+ +NS++ G+   G  V A ++F  M   GF  +   ++S+L   +
Sbjct: 232 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACT 291

Query: 307 ---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
              +L  G QVH  VL+   E DL + N+L+ +Y K G L+ A  LF  MPQ+DV+SW++
Sbjct: 292 GMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWST 349

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     + K  EAL  F+ M+ +GV P+ +T V +L AC+H G V+ G   F  M + +
Sbjct: 350 MISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLF 409

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           GI P  EH+ CMV+L GRAG +DEA   I   M  E   V+W  LL AC +H +  +   
Sbjct: 410 GIQPEREHHNCMVDLLGRAGKLDEAVEFI-RDMNLEPDAVIWRTLLGACRMHKSGNLAAY 468

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AA+++ +LEPD++    LL   Y +  +  D E+  + + DRG++
Sbjct: 469 AAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMK 513


>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g20730-like [Brachypodium distachyon]
          Length = 558

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 139/446 (31%), Positives = 247/446 (55%), Gaps = 10/446 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+     T+ S+   C     V  G ++H  +       +  + S L+ ++   G +
Sbjct: 104 LASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDVFVQSALMDMHLRCGSV 163

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A Q+F +M  +   A  WN+L+ G  E  +Y DA+ L   M    + PD FTF   LK
Sbjct: 164 VDAMQLFAEMERKDVVA--WNALLRGLVERAQYGDALGLLPSMLRGAMLPDHFTFGSALK 221

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  + ++   E +H   ++ G+  +  V+ +++D YAKC  +  AR ++D I   DL+S
Sbjct: 222 ACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVS 281

Query: 263 YNSMLTGY-IHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWV 318
             ++++GY +      +A ++F  +   G   D V +SS+    AN + LR G Q+H ++
Sbjct: 282 STALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYM 341

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
            +R    D+ + N+++ +Y+K G+   A   FD MP ++VVSW S+I A  K+    +A+
Sbjct: 342 CKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITACGKNGFGEDAV 401

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F++M  DGV P+ +TF+SLLSAC H G    G   F+ M+ KYGI PR EHY+  ++L
Sbjct: 402 SLFDRMVEDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDL 461

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             R G + +A+  +V+ ++ E +  ++GA+L AC  HG++ +GETAA+ LF + P++  +
Sbjct: 462 LARGGQLKDAWK-LVQNIDIEPNSSMFGAMLGACKTHGSMPLGETAAKNLFTIAPESSVH 520

Query: 496 FELLIKIYGNAGRLDDVERVERMLVD 521
           + +L  +Y  +   +D +R  +++ +
Sbjct: 521 YAVLANMYAESSLWEDAQRTRKLMAE 546



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 221/448 (49%), Gaps = 40/448 (8%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           + SLL++C  +     G  +H  I  +    +  +S+KL+  YA  G +  A +VFD M 
Sbjct: 16  YYSLLQSC--MSCFRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMP 73

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +R+  +  W +++SGY+  G+  +A+ L+  M   GV P+QFT+  V  ACAG G +R G
Sbjct: 74  HRSVVS--WTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSG 131

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           E+VH    +  F  D FV +AL+DM+ +CG +V A  +F  +  KD++++N++L G +  
Sbjct: 132 EQVHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVER 191

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV---HGWVLRRGVEWDLCIA 330
               +A  +   M+     PD     S L     + + A V   H  +++ G   +  + 
Sbjct: 192 AQYGDALGLLPSMLRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVI 251

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH----EALIYFEQMERDGV 386
            S+I  Y+K   L  A  ++D + + D+VS  ++I  +S D     +A+  F ++ R G+
Sbjct: 252 GSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGL 311

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             D +   SLL  CA++ S++ G ++ + M ++  ++      A +V++Y +AG   +A 
Sbjct: 312 RIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNA-VVDMYAKAGEFADA- 369

Query: 447 SMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFEL 498
                +  F+  P    V W +L+ AC  +G    GE A      +  D    N+  F  
Sbjct: 370 -----RRAFDEMPYRNVVSWTSLITACGKNG---FGEDAVSLFDRMVEDGVKPNDVTFLS 421

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLEF 526
           L+   G++G           L  +G+E+
Sbjct: 422 LLSACGHSG-----------LTSKGMEY 438


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 235/417 (56%), Gaps = 10/417 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H          +  + S L+ ++   G +++A Q+F +M  +   +  WN+LI G+
Sbjct: 132 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVS--WNALIRGF 189

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            E G   DA+ L+  M +E + PD +T    LKAC  +G+    E +H   ++ G+  + 
Sbjct: 190 VERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEK 249

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY-IHHGLLVEAFDIFRGMIL 288
            V+ +L++ YAKC  +  AR ++D I   DL+S  ++++GY +      +A ++F  +  
Sbjct: 250 VVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHR 309

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G   D V +SS+L   A+ +  R G Q+H ++ ++    D+ + N+L+ +Y+K G+   
Sbjct: 310 KGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSD 369

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A   FD MP ++V+SW S+I A  ++    +A+  F +M  DGV P+ +TF+SLLSAC H
Sbjct: 370 AKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGH 429

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G    G   F+ M+ +YGI PR EHY+  ++L  R G +++A+  +V+K   + +  + 
Sbjct: 430 CGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWK-LVQKTNLKPNSSML 488

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           GA+L AC LHGN+ +GETAA+ LF ++P +  N+ +L  +Y      +D +R   ++
Sbjct: 489 GAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVI 545



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 223/449 (49%), Gaps = 39/449 (8%)

Query: 94  FASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++SLL+ C    A   G  +H R+   +    +  +S+KL+  YA FG +  A +VFD M
Sbjct: 14  YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGM 73

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R+  +  W +++SGYA  G   +A+ L+  M   G  P+QFT+     ACAG G  R 
Sbjct: 74  PHRSVVS--WTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARS 131

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE+VH  A +  F  D FV +AL+DM+ +CG +  AR +F  +G KD++S+N+++ G++ 
Sbjct: 132 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVE 191

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV---HGWVLRRGVEWDLCI 329
            G   +A  +F  M+     PD   + S L    ++ +   V   H  +++ G   +  +
Sbjct: 192 RGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVV 251

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH----EALIYFEQMERDG 385
             SLI  Y+K   +  A  ++D + + D+VS  ++I  ++ D     +A+  F ++ R G
Sbjct: 252 IGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKG 311

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  D +   S+L  CA + S + G ++ + M +K  +       A +V++Y +AG   +A
Sbjct: 312 LWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNA-LVDMYAKAGEFSDA 370

Query: 446 YSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFE 497
                 K  F+  P    + W +L+ AC  +G+   GE A      +  D    N+  F 
Sbjct: 371 ------KRAFDEMPYRNVISWTSLITACGRNGS---GEDAVTLFNRMVEDGVRPNDVTFL 421

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLEF 526
            L+   G+ G           L ++G+E+
Sbjct: 422 SLLSACGHCG-----------LTNKGMEY 439



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 20/230 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ +     +S+L  C  + +   G ++H  +       +  + + L+ +YA  G   
Sbjct: 309 RKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFS 368

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + FD+M  R   +  W SLI+     G  EDA+ L+ +M E+GV P+  TF  +L A
Sbjct: 369 DAKRAFDEMPYRNVIS--WTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSA 426

Query: 204 CAGLGLIRVGEKVHLDAV-RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           C   GL   G +     + R+G        ++ +D+ A+ G +  A   +  +   +L  
Sbjct: 427 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDA---WKLVQKTNLKP 483

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILN--------GFDPDPVAISSILAN 304
            +SML      G ++ A  +   M+L           DP      ++LAN
Sbjct: 484 NSSML------GAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLAN 527


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 248/439 (56%), Gaps = 18/439 (4%)

Query: 99  ETCYQL----KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           E+C  L    + V H  ++H  +  N   ++  I++KLL  YA    ID+A+ +FD ++ 
Sbjct: 4   ESCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTM 63

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           R +    W+ ++ G+A+ G++    A + ++   GV PD +T P V++ C     +++G 
Sbjct: 64  RDSKT--WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGR 121

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            +H   ++ G   D FV  +LVDMYAKC  +  A+ +F+R+ +KDL+++  M+  Y    
Sbjct: 122 VIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN 181

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-----VHGWVLRRGVEWDLCI 329
              E+  +F  M   G  PD VA+ +++   +  ++GA       + +++R G   D+ +
Sbjct: 182 AY-ESLVLFDRMREEGVVPDKVAMVTVVNACA--KLGAMHRARFANDYIVRNGFSLDVIL 238

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             ++I +Y+K G ++ A  +FD M +K+V+SW+++I A   H +  +A+  F  M    +
Sbjct: 239 GTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAI 298

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           LP+ +TFVSLL AC+H G ++ G R F+ M E++ + P V+HY CMV+L GRAG +DEA 
Sbjct: 299 LPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEAL 358

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I E M  E    +W ALL AC +H  + + E AA  L EL+P N  ++ LL  IY  A
Sbjct: 359 RLI-EAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKA 417

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+ + V +   M+  R L+
Sbjct: 418 GKWEKVAKFRDMMTQRKLK 436



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 159/300 (53%), Gaps = 19/300 (6%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+T    T   ++ TC     ++ G  +H ++  + L  +  + + L+ +YA   ++
Sbjct: 93  LRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVV 152

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A ++F++M ++      W  +I  YA+   YE ++ L+ +M EEGV PD+     V+ 
Sbjct: 153 EDAQRLFERMLSKDLVT--WTVMIGAYADCNAYE-SLVLFDRMREEGVVPDKVAMVTVVN 209

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA LG +      +   VR GF  D  +  A++DMYAKCG +  AR VFDR+  K++IS
Sbjct: 210 ACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVIS 269

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG--W 317
           +++M+  Y +HG   +A D+F  M+     P+ V   S+L   ++A L+  G +     W
Sbjct: 270 WSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMW 329

Query: 318 ---VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA---HSK 370
               +R  V+   C+ + L     + G+LD+A  L + M  +KD   W++++ A   HSK
Sbjct: 330 EEHAVRPDVKHYTCMVDLL----GRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSK 385


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 246/454 (54%), Gaps = 11/454 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I+  ++ + +G      TF +++ TC     VE G +L  L           + + ++ +
Sbjct: 254 IEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITM 313

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQ 194
           Y   G+  EA ++F  MS +   +  W +LISGY+  G  + A+  +  + +E G+  D 
Sbjct: 314 YGNSGMPKEAERMFSSMSEKNLIS--WTALISGYSRSGYGKKAVDAFLGLHDELGINFDS 371

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
                +L  C+    + +G ++H   ++ G   D  V  ALVD+YAKC  +  AR VFD 
Sbjct: 372 TLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDH 431

Query: 255 IGNKDLISYNSMLTGYIHH-GLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRI 310
           + NK + S+N++L G++   G   +   +F  + L G  PD V  S   S+LAN + L  
Sbjct: 432 LSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEK 491

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G   H + ++ G + ++ +ANS+I +Y+K G ++ A  +F+ M  +D +SWN++I A   
Sbjct: 492 GRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYAL 551

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H +  ++L  FE+M+R G  PD  T +++L AC + G  K G  LF++M  KYGI P +E
Sbjct: 552 HGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLE 611

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HYACM +L GRAG + EA   I+++  F  S ++W  L+  C LHGN+  G+ A++ L +
Sbjct: 612 HYACMADLLGRAGYLSEAMD-IIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLD 670

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           L P    ++ L+  +Y +    D+  +V +++ D
Sbjct: 671 LSPVEAGSYILVSNMYASEKMSDEAAKVRKVMND 704



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 203/420 (48%), Gaps = 19/420 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G      T   +L+ C        G ++H  +  +   +N  + + L+ +Y   G  D A
Sbjct: 163 GENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVA 222

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD M  +       N +I  Y   G    AI ++  +  +G EP  +TF  ++  C 
Sbjct: 223 EKVFDSMGFKDIRCL--NFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCN 280

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   +  G+++   A ++GF  +  V NA++ MY   G   +A  +F  +  K+LIS+ +
Sbjct: 281 GDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTA 340

Query: 266 MLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +++GY   G   +A D F G+    G + D   +++IL   ++ + L +G Q+HG+V++ 
Sbjct: 341 LISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKL 400

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI----IHAHSKDHEALIY 377
           G   D+ +A +L+ +Y+K  KL  A  +FDH+  K + S+N+I    + +   + + +I 
Sbjct: 401 GCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMIL 460

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F Q+   GV PD +TF  LLS  A+  S++ G R F     K G    +     ++++Y 
Sbjct: 461 FNQLRLAGVKPDMVTFSRLLSLLANQASLEKG-RSFHAYTVKTGFDTNISVANSVISMYA 519

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           + G I++A+ M    M    S + W AL+ A  LHG       A + LF  E      F+
Sbjct: 520 KCGSIEDAHQMF-NIMNCRDS-ISWNALISAYALHGQ------AQKSLFLFEEMKRKGFD 571



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 164/323 (50%), Gaps = 10/323 (3%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + +L LY  F  +D A +VFD+M  RT     W SLI GY E  +++ A ++   M + G
Sbjct: 106 NNVLNLYVKFNRLDLAQKVFDRM--RTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFG 163

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
              ++ T   +L+AC+      +GE++H   ++ GF  + FV  +L+ MY K G    A 
Sbjct: 164 ENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAE 223

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA--NASL 307
            VFD +G KD+   N M+  Y   G   +A ++F+ ++ +GF+P     ++I++  N  L
Sbjct: 224 KVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDL 283

Query: 308 -LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            +  G Q+ G   + G   +  + N++I +Y   G   +A  +F  M +K+++SW ++I 
Sbjct: 284 GVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALIS 343

Query: 367 AHSKD---HEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
            +S+     +A+  F  +  + G+  D     ++L  C+   ++++G ++    V K G 
Sbjct: 344 GYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHG-FVMKLGC 402

Query: 423 SPRVEHYACMVNLYGRAGLIDEA 445
           +  V     +V+LY +   +  A
Sbjct: 403 ACDVNVATALVDLYAKCEKLQSA 425



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 9/276 (3%)

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           +P ++K   G     +G+ VH   V+ G   D F  N ++++Y K   +  A+ VFDR+ 
Sbjct: 70  WPELIKISIGSRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMR 129

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQ 313
            ++ I++ S++ GY+       AF I   M   G + +    + IL   S      +G Q
Sbjct: 130 TRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQ 189

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           +H +V++ G + ++ +  SLI +Y+K G  D A  +FD M  KD+   N +I  + +   
Sbjct: 190 IHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGN 249

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             +A+  F+ +  DG  P   TF +++S C     V+ G++L   +  KYG         
Sbjct: 250 GGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQL-QGLAFKYGFLSETSVGN 308

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            ++ +YG +G+  EA  M       E + + W AL+
Sbjct: 309 AIITMYGNSGMPKEAERMFSSMS--EKNLISWTALI 342


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/417 (33%), Positives = 232/417 (55%), Gaps = 8/417 (1%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           R+I T L R    I+  L   YA    I    ++F  +     F F  +SLI+  ++   
Sbjct: 41  RIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLF--HSLITLTSKFSF 98

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
            ++++  Y +M    +    +TF  V+K+ A L    +GE +H      G+G D +V  A
Sbjct: 99  PQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAA 158

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           LV  YAK G ++ AR VFD++  K ++++NSM++GY  +G   EA ++F  M   G  PD
Sbjct: 159 LVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPD 218

Query: 295 PVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                S+L   A    + +G  VH ++ R   + ++ +  +L+ +YS+ G + +A  +FD
Sbjct: 219 SSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFD 278

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M +K++V+W ++I     H    +A+  F +M  DG  P+++TFV++LSACAH G V  
Sbjct: 279 SMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDE 338

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G ++F+ M ++YG+ P VEH  CMV++ GRAG ++EAY  I      E +P VW A+L A
Sbjct: 339 GRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGA 398

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C +H N  +G   A+ L  +EP+N  ++ +L  IY  AGR+D VE++  +++   L+
Sbjct: 399 CKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLK 455



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           Q  F K  ++ L  ++QDL      G+   + TF SLL  C Q+ A+  G  +H  I  N
Sbjct: 196 QNGFGKEAVE-LFFLMQDL------GVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARN 248

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
               N  + + L+ +Y+  G + +A +VFD M  +   A  W ++ISGY   G    AI 
Sbjct: 249 CFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVA--WTAMISGYGMHGHGSQAIE 306

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDM 238
           L+ +M  +G  P+  TF  VL ACA  GL+  G ++    ++  +G    V +   +VDM
Sbjct: 307 LFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQI-FTTMKQEYGLVPSVEHQVCMVDM 365

Query: 239 YAKCGDIVKA 248
             + G + +A
Sbjct: 366 LGRAGHLNEA 375


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 245/431 (56%), Gaps = 9/431 (2%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +L+ C +  AV      H  I    L  +  + + L+  Y+  G ++ A QVFD M  R+
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             +  WN++I  Y       +A+ ++ +M  EG +  +FT   VL AC         +K+
Sbjct: 127 LVS--WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 184

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  +V+     + +V  AL+D+YAKCG I  A  VF+ + +K  ++++SM+ GY+ +   
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 244

Query: 277 VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
            EA  ++R       + +   +SS++   +N + L  G Q+H  + + G   ++ +A+S 
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSA 304

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           + +Y+K G L ++  +F  + +K++  WN+II     H++  E +I FE+M++DG+ P+ 
Sbjct: 305 VDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 364

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TF SLLS C H G V+ G R F +M   YG+SP V HY+CMV++ GRAGL+ EAY +I 
Sbjct: 365 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI- 423

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + + F+ +  +WG+LL +C ++ N+ + E AA+KLFELEP+N  N  LL  IY    + +
Sbjct: 424 KSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWE 483

Query: 511 DVERVERMLVD 521
           ++ +  ++L D
Sbjct: 484 EIAKSRKLLRD 494



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 93  TFASLLETC-YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T +S+L  C     A+E   KLH L     +  N  + + LL LYA  G+I +A QVF+ 
Sbjct: 164 TISSVLSACGVNCDALECK-KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 222

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M ++++    W+S+++GY +   YE+A+ LY + +   +E +QFT   V+ AC+ L  + 
Sbjct: 223 MQDKSSVT--WSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI 280

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G+++H    + GFG + FV ++ VDMYAKCG + ++  +F  +  K+L  +N++++G+ 
Sbjct: 281 EGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFA 340

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            H    E   +F  M  +G  P+ V  SS+L+
Sbjct: 341 KHARPKEVMILFEKMQQDGMHPNEVTFSSLLS 372


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 169/585 (28%), Positives = 276/585 (47%), Gaps = 86/585 (14%)

Query: 26  RSRKQRRQKQQQISRNRITTFSSYP---------KSSPTPLLTNQKA--FPKTKLQALDS 74
           R  K   Q    IS   I ++S+Y          +S P P + +  +  +  TK +    
Sbjct: 40  RILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQ 99

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
            I        +G+   T    +L + C +L A + G ++H +   + L  +  +   L  
Sbjct: 100 SIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFH 159

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFA---------------------------------FP 161
           +Y   G + +A +VFD+MS +                                       
Sbjct: 160 MYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVS 219

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN ++SG+   G +++A+ ++ +M   G  PDQ T   VL +      + +G ++H   +
Sbjct: 220 WNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVI 279

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFD------------------RIGNKD---- 259
           + G   D  V++A++DMY K G +     +FD                  R G  D    
Sbjct: 280 KQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALE 339

Query: 260 -------------LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
                        ++S+ S++ G   +G  +EA ++FR M + G  P+ V I S+L    
Sbjct: 340 MFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACG 399

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           N + L  G   HG+ +R  +  D+ + ++LI +Y+K G++  +  +F+ MP K++V WNS
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNS 459

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +++    H K  E +  FE + R  + PD ++F SLLSAC  +G    G + F++M E+Y
Sbjct: 460 LMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEY 519

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           GI PR+EHY+CMVNL GRAG + EAY +I E + FE    VWGALL +C L  NV + E 
Sbjct: 520 GIKPRLEHYSCMVNLLGRAGKLQEAYDLIKE-IPFEPDSCVWGALLNSCRLQNNVDLAEI 578

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           AAQKLF LEP+N   + L+  IY   G   +V+ +   +   GL+
Sbjct: 579 AAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLK 623



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 131/332 (39%), Gaps = 73/332 (21%)

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           + H   ++ G   DG++   L+  Y+       A  +   I +  + S++S++       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISS---ILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L  ++  +F  M  +G  PD   + +   + A  S  + G Q+H      G++ D  +  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDV--------------------------------- 358
           SL  +Y + G++  A  +FD M +KDV                                 
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 359 --VSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL- 412
             VSWN I+   ++     EA+I F++M   G  PD +T  S+L +     ++ +G ++ 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 413 --------------FSVMVEKYGISPRV-------------EHYACMVNLYG--RAGLID 443
                          S M++ YG S  V             E   C   + G  R GL+D
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 444 EAYSM--IVEKMEFEASPVVWGALLYACYLHG 473
           +A  M  + ++ + E + V W +++  C  +G
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNG 367



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
            Q H  +L+ G + D  I+  LI  YS     + A  +   +P   V S++S+I+A +K 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94

Query: 372 H---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               +++  F +M   G++PD     +L   CA L + K G+++  V     G+      
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVS-GLDMDAFV 153

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              + ++Y R G + +A   + ++M  E   V   ALL
Sbjct: 154 QGSLFHMYMRCGRMGDARK-VFDRMS-EKDVVTCSALL 189


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 233/408 (57%), Gaps = 13/408 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           I + LLR+YA  G I +A +VFD M +R      WN++IS Y++ G  + +I L+ Q+  
Sbjct: 180 IGTNLLRMYAEVGEIGDARKVFDGMPSRGLVT--WNAMISCYSKYGRGDKSIGLFRQLXR 237

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG+  D++T+  VL   A    +    +VH   +  GF  D F  NALV++Y+KCG +  
Sbjct: 238 EGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVAS 297

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A  +F+ I ++D++S+  ++ G++  G + EA  +F  M L   +P+      +L   A+
Sbjct: 298 ASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACAD 357

Query: 305 ASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           A+  + G   HG VL+ G +  D+ + ++++ +YSK G++  A   F  MP++D+ SWN 
Sbjct: 358 ANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNG 417

Query: 364 IIHAHSKD---HEALIYFEQM---ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           II  ++++    +AL  + +M      G+ P+ +TFV +L AC+H G +K G   F  MV
Sbjct: 418 IICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMV 477

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           +K+ I P  EHY CMV+L GRAGL+ EA ++I+  +  +   V+WGALL AC LHG+V M
Sbjct: 478 DKHLIKPTAEHYTCMVDLLGRAGLLQEAEALIL-ALPIKPDNVMWGALLGACKLHGDVQM 536

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
               A+ L+  EP N  N+ LL   Y + G   +   +  ++  RG+E
Sbjct: 537 TRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVE 584



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 187/381 (49%), Gaps = 18/381 (4%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           S V+NG+         LL+     +A+    KL   +P   +     I S     Y  FG
Sbjct: 40  SLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSG----YFKFG 95

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           L+ EA ++FD  S R   +  WN ++SG  +  +  + +  + +M    V PD FT+  +
Sbjct: 96  LVSEAIKLFDGTSKRDCHS--WNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYA-I 152

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           +  C  LG    G++VH D V+     D F+   L+ MYA+ G+I  AR VFD + ++ L
Sbjct: 153 IIPCCDLGF---GQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGL 209

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGW 317
           +++N+M++ Y  +G   ++  +FR +   G   D    + +L   A+  ++    QVH  
Sbjct: 210 VTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSL 269

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
           ++ RG   D    N+L+ +YSK G +  A  LF+ +P +DVVSW  II    +     EA
Sbjct: 270 IIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEA 329

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG-ISPRVEHYACMV 433
           +  F QM+   + P+  TF  LL ACA   + + G R F  +V K+G +   V   + +V
Sbjct: 330 MWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKG-RHFHGLVLKFGLLGADVVVGSAVV 388

Query: 434 NLYGRAGLIDEAYSMIVEKME 454
           ++Y + G + +A     E  E
Sbjct: 389 DMYSKCGEMGDALRAFQEMPE 409


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 256/477 (53%), Gaps = 19/477 (3%)

Query: 63  AFPKTKLQALDSIIQD------LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-R 115
            FP      L+  I D      L      G+    + + ++L  C + +A+  G ++H  
Sbjct: 24  TFPSNSHHVLNIHIHDTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAH 83

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
           +I T+ L     + ++L+  Y     + +A  VFD M  R   +  W ++IS Y++ G  
Sbjct: 84  MIKTHYL-PCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVS--WTAMISAYSQRGYA 140

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
             A++L+ QM   G EP++FTF  VL +C G     +G ++H   ++  +    +V ++L
Sbjct: 141 SQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSL 200

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +DMYAK G I +AR +F  +  +D++S  ++++GY   GL  EA ++FR +   G   + 
Sbjct: 201 LDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNY 260

Query: 296 VAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           V  +S+L   S    L  G QVH  +LR  V   + + NSLI +YSK G L  A  +FD 
Sbjct: 261 VTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDT 320

Query: 353 MPQKDVVSWNSIIHAHSKDHEALIYFE----QMERDGVLPDHLTFVSLLSACAHLGSVKV 408
           + ++ V+SWN+++  +SK  E     E     ++ + V PD +T +++LS C+H G    
Sbjct: 321 LHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDK 380

Query: 409 GERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
           G  +F  M   K  + P  +HY C+V++ GRAG ++ A+   V+KM FE S  +WG LL 
Sbjct: 381 GMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEF-VKKMPFEPSAAIWGCLLG 439

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           AC +H N+ +GE    +L ++EP+N  N+ +L  +Y +AGR +DV  +  +++ + +
Sbjct: 440 ACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAV 496


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 241/439 (54%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L      + +  G+ +H  +          +S+ L+ +Y+  G +  A  +FD M
Sbjct: 133 TIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGM 192

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +RT  +  WNS+I GY + G+ E A+ ++ +M +EGV+P   T    L ACA LG +  
Sbjct: 193 DHRTVVS--WNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLER 250

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH    +     D  V+N+L+ MY+KC  +  A  +F  + NK L+S+N+M+ GY  
Sbjct: 251 GKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQ 310

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G + EA + F  M      PD   + S+   LA  S+ R    +HG V+RR ++ ++ +
Sbjct: 311 NGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFV 370

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +L+ +Y+K G +  A  LFD M  + V++WN++I     H     ++  F++M++  +
Sbjct: 371 MTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTI 430

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+  LSAC+H G V+ G   F  M + YGI P ++HY  MV+L GRAG +++A+
Sbjct: 431 KPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAW 490

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I +KM  +    V+GA+L AC +H NV +GE AA ++F+L PD+     LL  IY  A
Sbjct: 491 DFI-QKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATA 549

Query: 507 GRLDDVERVERMLVDRGLE 525
                V +V  ++   GL+
Sbjct: 550 SMWGKVAKVRTIMEKSGLQ 568



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 244/505 (48%), Gaps = 57/505 (11%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           K  +LDS +        + +      F  LL+ C     ++ G ++H  + T+    N  
Sbjct: 7   KSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLF 66

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
             + ++ +YA    I++A+ +FD+M  R      WN++ISGYA+ G  + A+ L  +M E
Sbjct: 67  AMTGVVNMYAKCRQINDAYNMFDRMPERDLVC--WNTMISGYAQNGFAKVALMLVLRMSE 124

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG  PD  T   +L A A   L+R+G  VH   +R GF     V  ALVDMY+KCG +  
Sbjct: 125 EGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSI 184

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR +FD + ++ ++S+NSM+ GY+  G    A  IF+ M+  G  P  V +   L   A+
Sbjct: 185 ARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACAD 244

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L  G  VH  V +  ++ D+ + NSLI +YSK  ++D A  +F ++  K +VSWN++
Sbjct: 245 LGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAM 304

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHL------------------ 403
           I  ++++   +EAL  F +M+   + PD  T VS++ A A L                  
Sbjct: 305 ILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFL 364

Query: 404 -----------------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
                            G++    +LF +M  ++ I+     +  M++ YG  GL   + 
Sbjct: 365 DKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT-----WNAMIDGYGTHGLGKTSV 419

Query: 447 SMIVE--KMEFEASPVVWGALLYACYLHG----NVCMGETAAQKLFELEPDNEHNFELLI 500
            +  E  K   + + + +   L AC   G     +C  E+  +K + +EP  +H +  ++
Sbjct: 420 ELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFES-MKKDYGIEPTMDH-YGAMV 477

Query: 501 KIYGNAGRLDDV-ERVERMLVDRGL 524
            + G AGRL+   + +++M +  G+
Sbjct: 478 DLLGRAGRLNQAWDFIQKMPIKPGI 502



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 181/334 (54%), Gaps = 12/334 (3%)

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           ++ GYA+    + A++ + +M+ + V P  + F  +LK C     ++ G+++H   +  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F ++ F +  +V+MYAKC  I  A  +FDR+  +DL+ +N+M++GY  +G    A  +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M   G  PD + I SIL   A+  LLRIG  VHG+VLR G E  + ++ +L+ +YSK G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 342 KLDQACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQMERDGVLPDHLTFVSLLS 398
            +  A  +FD M  + VVSWNS+I  +  S D E A++ F++M  +GV P ++T +  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           ACA LG ++ G +    +V++  +   V     ++++Y +   +D A  +   K     +
Sbjct: 241 ACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIF--KNLRNKT 297

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
            V W A++     +G  C+ E A     E++  N
Sbjct: 298 LVSWNAMILGYAQNG--CVNE-ALNAFCEMQSRN 328


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 237/451 (52%), Gaps = 10/451 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  E+ V  G+ +   +  S+L  C Q + +  G  +HRL     L K   + + L+ +
Sbjct: 195 LEVFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDM 254

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQ 194
           Y   G +++A +VFD+ S        W  +I  Y        A AL  +M      +P+ 
Sbjct: 255 YGKCGSLEDARRVFDEDSYDKDV-VSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNA 313

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   +L ACA L   +  +  H   +R G G D  V  ALVD YAKCG +     V ++
Sbjct: 314 VTMAHLLSACASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMGVIDMVVEK 373

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
            G++   ++N+ ++GY       +A  +F+ M+     PD   ++S++   A ++ L   
Sbjct: 374 -GSRRTETWNAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQA 432

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H 368
             +H  +L RG      IA  LI +Y+K G L  A  LF  +P+KDVV+W ++I     H
Sbjct: 433 NNIHCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMH 492

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
                A++ + +M   GV+P+ +T  SLL +C+H G V  G RLF+ M   +G+ P  EH
Sbjct: 493 GHAQTAMLLYSRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEH 552

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y C+V++ GRAG I+EAY  I E M FE +  VW +LL AC LH NV  GE AA+ LFEL
Sbjct: 553 YLCLVDMLGRAGRIEEAYRRI-EDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFEL 611

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           EPDN  N+ LL K+Y  A R  DV+ + R++
Sbjct: 612 EPDNVGNYVLLGKVYAAAERWSDVQHLRRVM 642



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 163/329 (49%), Gaps = 15/329 (4%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           LL  Y   G   +A  +  QM    + +   N+L+  Y+ LG +  A+ALY QM      
Sbjct: 52  LLYSYCACGCPFDAQNLLAQMPQPASVSVS-NTLLRSYSGLGFHRQALALYSQMRHF--- 107

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D  TF    KACAGL L R G  VH  A+  GFG D +V NA+V MY +C D+  A  V
Sbjct: 108 -DHLTFTFAAKACAGLRLRRHGRAVHGRALAAGFGSDAYVQNAIVSMYMRCRDVAAAEAV 166

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           F  + ++  +S+N+++TG +  G    A ++F  M+  G   D  ++ S+L   A A  L
Sbjct: 167 FVALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRGVCIDRASVVSVLPACAQARDL 226

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             G  VH   + RG+   + + N+LI +Y K G L+ A  +FD     KDVVSW  +I A
Sbjct: 227 HTGRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLEDARRVFDEDSYDKDVVSWTVMIGA 286

Query: 368 HSKDHEALIYF----EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           +  +  A   F    E +      P+ +T   LLSACA L S K  +   ++ + + G+ 
Sbjct: 287 YVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACASLLSGKHAKCTHALCI-RLGLG 345

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
             +     +V+ Y + G +     M+VEK
Sbjct: 346 SDIVVETALVDCYAKCGYMG-VIDMVVEK 373


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 245/458 (53%), Gaps = 13/458 (2%)

Query: 78  DLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
           DL   ++NG  T    T  S+ +   +L  V  G ++        +  N  + + L+ +Y
Sbjct: 308 DLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMY 367

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           +  G + +A  VFD          PWN++ISGY++ G  ++A+ LY QM + G+  D +T
Sbjct: 368 SKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYT 427

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL---NALVDMYAKCGDIVKARTVFD 253
           +  V  A A    ++ G  VH   +    G D  V+   NA+ D Y+KCG +   R VFD
Sbjct: 428 YCSVFNAIAASKSLQFGRVVH--GMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFD 485

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
           R+  +D++S+ +++T Y    L  EA   F  M   GF P+    SS+L   A+   L  
Sbjct: 486 RMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 545

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G QVHG + + G++ + CI ++LI +Y+K G + +A  +FD +   D+VSW +II  +++
Sbjct: 546 GRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQ 605

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                +AL  F +ME  G+  + +T + +L AC+H G V+ G   F  M + YG+ P +E
Sbjct: 606 HGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEME 665

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HYAC+++L GR G +D+A   I  KM  E + +VW  LL  C +HGNV +GE AA+K+  
Sbjct: 666 HYACIIDLLGRVGRLDDAMEFI-RKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILS 724

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + P+    + LL   Y   G  +D   +  ++ D+G++
Sbjct: 725 IRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVK 762



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 239/482 (49%), Gaps = 50/482 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +GI      +++++++C  L ++E G  +H  I       +  +S+ LL +YA  G I
Sbjct: 213 LNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI 272

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++++ VF+ M+     +  WN++ISG    G + +A  L+ +M+     P+ +T   V K
Sbjct: 273 EDSYWVFNMMTEHNQVS--WNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSK 330

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR--IGNKDL 260
           A   L  + +G++V   A   G   +  V  AL+DMY+KCG +  AR+VFD   I     
Sbjct: 331 AVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVN 390

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGW 317
             +N+M++GY   G   EA +++  M  NG   D     S+   +A +  L+ G  VHG 
Sbjct: 391 TPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGM 450

Query: 318 VLRRGVEWDLCIANSLIV-VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
           VL+ G++  +   N+ I   YSK G L+    +FD M ++D+VSW +++ A+S+     E
Sbjct: 451 VLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEE 510

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF---------------SVMVE 418
           AL  F  M  +G  P+  TF S+L +CA L  ++ G ++                S +++
Sbjct: 511 ALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALID 570

Query: 419 KYG---------------ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EASPV 460
            Y                 +P +  +  +++ Y + GL+++A  +   +ME    +A+ V
Sbjct: 571 MYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLF-RRMELSGIKANAV 629

Query: 461 VWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD-VERVE 516
               +L+AC   G V  G    Q++   + + P+ EH +  +I + G  GRLDD +E + 
Sbjct: 630 TLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEH-YACIIDLLGRVGRLDDAMEFIR 688

Query: 517 RM 518
           +M
Sbjct: 689 KM 690



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 197/404 (48%), Gaps = 19/404 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLI-PTNLLRKNKGI-SSKLLRLYATFGLIDEAH 146
            Q +    +L  C +  ++     +H L+  +N   K+  +  +    +Y+       A 
Sbjct: 116 TQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAAC 175

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            VFD+M  R  F+  W  +I G  E G + D    + +M   G+ PD+F +  ++++C G
Sbjct: 176 GVFDEMPQRNVFS--WTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 233

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L  + +G+ VH   V  GF    FV  +L++MYAK G I  +  VF+ +   + +S+N+M
Sbjct: 234 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAM 293

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGV 323
           ++G   +GL +EAFD+F  M      P+    V++S  +     + +G +V       G+
Sbjct: 294 ISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGI 353

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS--WNSIIHAHSK---DHEALIYF 378
           E ++ +  +LI +YSK G L  A  +FD       V+  WN++I  +S+     EAL  +
Sbjct: 354 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 413

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYG 437
            QM ++G+  D  T+ S+ +A A   S++ G R+   MV K G+   V      + + Y 
Sbjct: 414 VQMCQNGITSDLYTYCSVFNAIAASKSLQFG-RVVHGMVLKCGLDLMVVSVNNAIADAYS 472

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + G +++    + ++ME E   V W  L+ A   +    +GE A
Sbjct: 473 KCGFLEDVRK-VFDRME-ERDIVSWTTLVTA---YSQSSLGEEA 511


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 249/490 (50%), Gaps = 60/490 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  ++L  C  LKAV    ++H     N    +  + + L+  YA  GL++ A +VF+ M
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--------------------- 191
             +   +  WN++++GY++ G +E A  L+  M +E +                      
Sbjct: 334 EFKDVVS--WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 391

Query: 192 --------------PDQFTFPRVLKACAGLGLIRVGEKVH----------LDAVRFGFGF 227
                         P+  T   VL ACA LG    G ++H          LD    G   
Sbjct: 392 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 451

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
           D  V NAL+DMY+KC     AR++FD I    ++++++  M+ G+  +G   +A  +F  
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 511

Query: 286 MILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLR--RGVEWDLCIANSLIVVYS 338
           MI    G  P+   IS IL   A+ + +RIG Q+H +VLR  R       +AN LI +YS
Sbjct: 512 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYS 571

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G +D A  +FD M QK  +SW S++     H +  EAL  F++M + G +PD +TF+ 
Sbjct: 572 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 631

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L AC+H G V  G   F  M   YG++PR EHYAC ++L  R+G +D+A+   V+ M  
Sbjct: 632 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWR-TVKDMPM 690

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           E + VVW ALL AC +H NV + E A  KL E+  +N+ ++ L+  IY  AGR  DV R+
Sbjct: 691 EPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARI 750

Query: 516 ERMLVDRGLE 525
             ++   G++
Sbjct: 751 RHLMKKSGIK 760



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 146/545 (26%), Positives = 241/545 (44%), Gaps = 100/545 (18%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LDS I      ++ G      T   +L+ C +L +   G   H LI  N    N  I + 
Sbjct: 143 LDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNA 202

Query: 132 LLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQM----- 185
           L+ +Y+  G ++EA  +FD+++ R       WNS++S + +      A+ L+ +M     
Sbjct: 203 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 262

Query: 186 -EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
            +      D  +   +L AC  L  +   ++VH +A+R G   D FV NAL+D YAKCG 
Sbjct: 263 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGL 322

Query: 245 IVKARTVFDRIGNKDLISYNSM-----------------------------------LTG 269
           +  A  VF+ +  KD++S+N+M                                   + G
Sbjct: 323 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAG 382

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRR----- 321
           Y   G   EA ++FR MI +G  P+ V I S+L A ASL     G ++H + L+      
Sbjct: 383 YSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTL 442

Query: 322 -----GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSK---D 371
                G + DL + N+LI +YSK      A  +FD +P  +++VV+W  +I  H++    
Sbjct: 443 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 502

Query: 372 HEALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           ++AL  F +M  E  GV P+  T   +L ACAHL ++++G+++ + ++  +         
Sbjct: 503 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV 562

Query: 430 A-CMVNLYGRAGLIDEA---------------------YSM---------IVEKME---F 455
           A C++++Y + G +D A                     Y M         I +KM    F
Sbjct: 563 ANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGF 622

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDDV 512
               + +  +LYAC   G V  G +    +   + L P  EH +   I +   +GRLD  
Sbjct: 623 VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEH-YACAIDLLARSGRLDKA 681

Query: 513 ERVER 517
            R  +
Sbjct: 682 WRTVK 686



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 175/397 (44%), Gaps = 75/397 (18%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLI--------------------PTNLLRKN 125
           G+ V    FASLL+ C     V    ++H+ I                    P+      
Sbjct: 39  GVDVYPSHFASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 95

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
           + + + ++  Y   G  D A  V ++++   A    WN LI  + + G  + AI +  +M
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSPAVW--WNLLIREHIKQGRLDSAINVSCRM 153

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
              G  PD FT P VLKAC  L   R G   H      GF  + F+ NALV MY++CG +
Sbjct: 154 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 213

Query: 246 VKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL------NGFDPDPV 296
            +A  +FD I   G  D+IS+NS+++ ++       A D+F  M L           D +
Sbjct: 214 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 273

Query: 297 AISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
           +I +IL     L+   Q   VHG  +R G   D+ + N+LI  Y+K G ++ A  +F+ M
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 354 PQKDVVSWNSIIHAHSK--------------------------------------DHEAL 375
             KDVVSWN+++  +S+                                       HEAL
Sbjct: 334 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 393

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
             F QM   G LP+ +T +S+LSACA LG+   G  +
Sbjct: 394 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 430


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 255/466 (54%), Gaps = 19/466 (4%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +AL+ ++Q ++SS   G+     T +S+L+ C    A   G ++H  +   +   ++ ++
Sbjct: 289 RALELLLQ-MKSS---GLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVA 344

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
             L+ +YA  G +D+A +VFD M  R      WN+LISG +  G + + ++L+ +M +EG
Sbjct: 345 VGLVDMYAKHGFLDDARKVFDFMPRRDLIL--WNALISGCSHDGRHGEVLSLFHRMRKEG 402

Query: 190 VEPD--QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           ++ D  + T   VLK+ A    I    +VH  A + G   D  V+N L+D Y KCG +  
Sbjct: 403 LDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDY 462

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A  VF    + D+IS  +M+T         +A  +F  M+  G +PD   +SS+L   + 
Sbjct: 463 AIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTS 522

Query: 308 LRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L     G QVH  +++R    D+   N+L+  Y+K G ++ A   F  +P++ +VSW+++
Sbjct: 523 LSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAM 582

Query: 365 I-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           I     H H K   AL  F +M  +GV P+H+T  S+LSAC H G V   ++ F  M E 
Sbjct: 583 IGGLAQHGHGK--RALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKET 640

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +GI    EHYACM+++ GRAG +++A  + V  M F+A+  VWGALL A  +H +  +G 
Sbjct: 641 FGIDRTEEHYACMIDILGRAGKLEDAMEL-VNNMPFQANAAVWGALLGASRVHRDPELGR 699

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            AA+KLF LEP+      LL   Y +AG  D++ +V +++ D  ++
Sbjct: 700 MAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVK 745



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 204/398 (51%), Gaps = 32/398 (8%)

Query: 92  ETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           ET  S L      +++  G  LH  L+ + LL    G S+ LL LY+   L   A  VFD
Sbjct: 5   ETIGSALARFGTSRSLFAGAHLHSHLLKSGLL---AGFSNHLLTLYSRCRLPSAARAVFD 61

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           ++ +    +  W+SL++ Y+  G   DA+  +  M   GV  ++F  P VLK       +
Sbjct: 62  EIPDPCHVS--WSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---V 116

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI----GNKDLISYNSM 266
           R G +VH  AV      D FV NALV +Y   G + +AR +FD      G ++ +S+N+M
Sbjct: 117 RFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTM 176

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           ++ Y+ +    +A  +FR M+ +G  P+    S ++     +  L  G QVHG V+R G 
Sbjct: 177 ISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGY 236

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           E D+  AN+L+ +YSK G ++ A  +F+ MP  DVVSWN+ I     H  DH AL    Q
Sbjct: 237 EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQ 296

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC-MVNLYGRA 439
           M+  G++P+  T  S+L ACA  G+  +G ++   MV+   ++   E  A  +V++Y + 
Sbjct: 297 MKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK--AVADFDEFVAVGLVDMYAKH 354

Query: 440 GLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHG 473
           G +D+A  +      F+  P    ++W AL+  C   G
Sbjct: 355 GFLDDARKV------FDFMPRRDLILWNALISGCSHDG 386



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 192/357 (53%), Gaps = 15/357 (4%)

Query: 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM----SNRTAFAFPW 162
           V  G ++H L     L  +  +++ L+ +Y  FG++DEA ++FD+       R A +  W
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS--W 173

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N++IS Y +  +  DAI ++ +M   G  P++F F  V+ AC G   +  G +VH   VR
Sbjct: 174 NTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR 233

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G+  D F  NALVDMY+K GDI  A TVF+++   D++S+N+ ++G + HG    A ++
Sbjct: 234 TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALEL 293

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
              M  +G  P+   +SS+L   A A    +G Q+HG++++   ++D  +A  L+ +Y+K
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAK 353

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD--HLTFV 394
            G LD A  +FD MP++D++ WN++I   S D    E L  F +M ++G+  D    T  
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           S+L + A   ++    R    + EK G+         +++ Y + G +D A  +  E
Sbjct: 414 SVLKSTASSEAI-CHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE 469



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N L+ +Y++C     AR VFD I +   +S++S++T Y ++G+  +A   FR M   G  
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVP 100

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
            +  A+  +L  A  +R GAQVH   +   +  D+ +AN+L+ VY   G +D+A  +FD 
Sbjct: 101 CNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDE 160

Query: 353 M----PQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
                 +++ VSWN++I A+ K+ +   A+  F +M   G  P+   F  +++AC     
Sbjct: 161 YVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRD 220

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           ++ G ++   +V + G    V     +V++Y + G I+ A + + EKM   A  V W A 
Sbjct: 221 LEAGRQVHGAVV-RTGYEKDVFTANALVDMYSKLGDIEMA-ATVFEKMP-AADVVSWNAF 277

Query: 466 LYACYLHGN 474
           +  C  HG+
Sbjct: 278 ISGCVTHGH 286


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 211/363 (58%), Gaps = 7/363 (1%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           NS+I  Y +  ++  ++ +Y QM + G+ PD  TFP VLK+ A L    +G+ +H   ++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GF  + +V  ALV+MY  C  +  AR VFD I +++++S+N+++TGY H+ +  +  D+
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           FR M + G  P  V +  +L   A+   L  G  +  ++    +  ++ +  +LI +Y+K
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSL 396
            G +D+A  +F  M  K+V +WN +I  ++   +   AL  F +M  +   PD +TF+ +
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGV 350

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L AC H G V  G   F+ M E++G+ PR+EHY CMV+L GRAG +DEA  +I + M  +
Sbjct: 351 LCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLI-QAMSMQ 409

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
             P++W  LL AC +HGN+ +GE A +KL ELEP+N  N+ LL  +Y    R D V  V 
Sbjct: 410 PDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVR 469

Query: 517 RML 519
            M+
Sbjct: 470 EMM 472



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 164/366 (44%), Gaps = 53/366 (14%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NGI   + TF ++L++  QL   E G  +H  I       N  +S+ L+ +Y T   + 
Sbjct: 135 KNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVS 194

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A QVFD++ +R   +  WN+LI+GY     +   I ++ +M+  G +P + T   VL A
Sbjct: 195 DARQVFDEIPDRNIVS--WNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLA 252

Query: 204 CAGLGLIRVGEKV--HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           CA LG +  G  +  ++D  R       FV  AL+DMYAKCG + +A  +F  +  K++ 
Sbjct: 253 CAHLGALNQGRWIDDYIDHNRLRLNV--FVGTALIDMYAKCGVVDEAEKIFKAMRVKNVY 310

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA--------NASLLRIGAQ 313
           ++N +++GY  +G    A   F  MI+  F PD V    +L         N       + 
Sbjct: 311 TWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSM 370

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE 373
              + LR  +E   C+ + L     + G LD+A  L   M  +                 
Sbjct: 371 KEEFGLRPRIEHYGCMVDLL----GRAGFLDEAQQLIQAMSMQ----------------- 409

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACM 432
                         PD + +  LL AC   G++++GE     ++E   + P   E+Y  +
Sbjct: 410 --------------PDPIIWRELLGACRIHGNIQLGEFAIKKLLE---LEPNNGENYVLL 452

Query: 433 VNLYGR 438
            NLY R
Sbjct: 453 ANLYAR 458


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 241/453 (53%), Gaps = 20/453 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA---TF 139
           ++NG      T +S+L  C +L +   G +LH L     L  +  +S  L+ +YA     
Sbjct: 247 LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNG 306

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF-QMEEEGVEPDQFTFP 198
             +  A +VF++M      A  W +L+SGY + G  ++ + + F +M  EG+ P+  T+ 
Sbjct: 307 QSLHNAREVFNRMPKHNVMA--WTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYS 364

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +LKACA LG    G ++H   V+        V NALV MYA+ G I +AR  FD++  K
Sbjct: 365 SMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEK 424

Query: 259 DLISYNSMLTG----YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           +++S++  L G      +    +E  ++       G      ++ S  A+  +L  G ++
Sbjct: 425 NMVSFSGNLDGDGRSNTYQDYQIERMELGISTFTFG------SLISAAASVGMLTKGQRL 478

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           H   L+ G   D  I NSL+ +YS+ G L  AC +FD M   +V+SW S+I     H   
Sbjct: 479 HALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYA 538

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
             AL  F  M   GV P+ +T++++LSAC+H G VK G+  F +M + +G+ PR+EHYAC
Sbjct: 539 ARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYAC 598

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV+L GR+GL+++A   I E M  +   +VW  LL AC  H N+ +GE AA  + +LEP 
Sbjct: 599 MVDLLGRSGLVEDALDFINE-MPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQ 657

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +   + LL  +Y  AG  D V R+  ++ D+ L
Sbjct: 658 DPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNL 690



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 187/344 (54%), Gaps = 13/344 (3%)

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H L   +LL  +  +++ LL LY+    +  A  VFD M         W ++ S  +  G
Sbjct: 72  HLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNG 131

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV-RFGF-GFDGFV 231
              +A+ L+ +  EEG+ P+ FT     +AC    L  +     L  V + GF G D  V
Sbjct: 132 AEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSV 191

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
             AL+DM+AK GD+V  R VFD +  + ++ +  ++T Y   G   EA ++F  M+ NGF
Sbjct: 192 GCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGF 251

Query: 292 DPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSK--DGK-LDQ 345
            PD   +SS+L+  + L   R+G Q+H   LR G+E D C++  L+ +Y+K  +G+ L  
Sbjct: 252 QPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHN 311

Query: 346 ACWLFDHMPQKDVVSWNSIIHAH----SKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           A  +F+ MP+ +V++W +++  +    S+D++ +I F +M  +G+ P+H+T+ S+L ACA
Sbjct: 312 AREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACA 371

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +LG    G ++ +  V+       V   A +V++Y  +G I+EA
Sbjct: 372 NLGDQDSGRQIHTHCVKSNLADLNVVGNA-LVSMYAESGSIEEA 414



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 199/401 (49%), Gaps = 16/401 (3%)

Query: 82  SVQNGITVQTETFASLLETCY--QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           +++ G+     T  +  + C+  +L  +  G  L  +        +  +   L+ ++A  
Sbjct: 143 TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKN 202

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +    +VFD +  RT     W  LI+ YA+ G  ++A+ L+  M E G +PDQ+T   
Sbjct: 203 GDLVAMRRVFDGLFERTVVV--WTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSS 260

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD---IVKARTVFDRIG 256
           +L AC  LG  R+G+++H  A+R G   D  V   LVDMYAK  +   +  AR VF+R+ 
Sbjct: 261 MLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMP 320

Query: 257 NKDLISYNSMLTGYIHHGLL-VEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
             +++++ ++L+GY+  G    +   +F  M+  G  P+ +  SS+L   AN      G 
Sbjct: 321 KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGR 380

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
           Q+H   ++  +     + N+L+ +Y++ G +++A   FD + +K++VS++  +    + +
Sbjct: 381 QIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSN 440

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
               Y  Q+ER  +     TF SL+SA A +G +  G+RL ++ + K G          +
Sbjct: 441 TYQDY--QIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSL-KAGFGSDRAIGNSL 497

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           V++Y R G + +A  +  E  +     + W +++     HG
Sbjct: 498 VSMYSRCGYLVDACQVFDEMNDHNV--ISWTSMISGLAKHG 536


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 240/439 (54%), Gaps = 17/439 (3%)

Query: 96  SLLETCYQLKAVEH----GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           SLL  C  L+ ++      IK H     ++L K     S    L  T   +  AH +FDQ
Sbjct: 25  SLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCS----LNPTTTSMQHAHHLFDQ 80

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +       F  N++  GYA       A  L+ Q+   G+ PD +TFP +LKACA    + 
Sbjct: 81  IPQPDIVLF--NTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALE 138

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G ++H  A++ G   + +V   L++MY  C ++  AR VFD+I    +++YN+M+TGY 
Sbjct: 139 EGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYA 198

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
                 EA  +FR +      P  V + S+L++ +L   L +G  +H +V + G    + 
Sbjct: 199 RGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVK 258

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +  +LI +Y+K G LD A  +F++M  +D  +W+++I A   H    +A+  F++M + G
Sbjct: 259 VDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAG 318

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             PD +TF+ LL AC+H G V+ G   F  M +KYG+ P ++HY CMV+L GRAG ++EA
Sbjct: 319 TEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEA 378

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y  IV  +    +P++W  LL AC  HGNV +G+   +++FEL+  +  ++ +L  +   
Sbjct: 379 YEFIV-GLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCAR 437

Query: 506 AGRLDDVERVERMLVDRGL 524
           AGR +DV  V +++ +RG+
Sbjct: 438 AGRWEDVNYVRKLMNERGV 456



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 176/381 (46%), Gaps = 49/381 (12%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           T L+A     Q L S    G+     TF SLL+ C   KA+E G +LH L     L +N 
Sbjct: 101 TPLRAFTLFTQILFS----GLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENV 156

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            +   L+ +Y     +D A +VFD++       +  N++I+GYA      +A++L+ +++
Sbjct: 157 YVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY--NAMITGYARGSRPNEALSLFRELQ 214

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              ++P   T   VL +CA LG + +G+ +H    + GF     V  AL+DMYAKCG + 
Sbjct: 215 ARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLD 274

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
            A  VF+ +  +D  ++++M+  Y  HG  ++A  +F+ M   G +PD +    +L   +
Sbjct: 275 DAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACS 334

Query: 304 NASLLRIGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +  L+  G +  +G   + GV   +     ++ +  + G+L++A      +P        
Sbjct: 335 HTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLP-------- 386

Query: 363 SIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE---K 419
                                  + P  + + +LLSAC   G+V++G+R+   + E    
Sbjct: 387 -----------------------IRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDS 423

Query: 420 YGISPRVEHYACMVNLYGRAG 440
           +G       Y  + NL  RAG
Sbjct: 424 HG-----GDYIILSNLCARAG 439


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 236/436 (54%), Gaps = 10/436 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F+S +  C  L ++E G ++H L     +     + S L  +Y+  G + +A +VF++M
Sbjct: 43  AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 102

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W ++I GY+++GE+E+A+  + +M +E V  DQ      L AC  L   + 
Sbjct: 103 PCKDEVS--WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKF 160

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYI 271
           G  VH   V+ GF  D FV NAL DMY+K GD+  A  VF      ++++SY  ++ GY+
Sbjct: 161 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 220

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
               + +   +F  +   G +P+    SS++   AN + L  G Q+H  V++   + D  
Sbjct: 221 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 280

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +++ L+ +Y K G L+QA   FD +     ++WNS++     H    +A+  FE+M   G
Sbjct: 281 VSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG 340

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P+ +TF+SLL+ C+H G V+ G   F  M + YG+ P  EHY+C+++L GRAG + EA
Sbjct: 341 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEA 400

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I  +M FE +   W + L AC +HG+  MG+ AA+KL +LEP N     LL  IY N
Sbjct: 401 KEFI-NRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 459

Query: 506 AGRLDDVERVERMLVD 521
             + +DV  V   + D
Sbjct: 460 ERQWEDVRSVRMRMRD 475



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 179/334 (53%), Gaps = 16/334 (4%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W ++ISG ++  ++ +AI  +  M   G  P QF F   ++ACA LG I +G+++H  A+
Sbjct: 9   WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLAL 68

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +FG G + FV + L DMY+KCG +  A  VF+ +  KD +S+ +M+ GY   G   EA  
Sbjct: 69  KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALL 128

Query: 282 IFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
            F+ MI      D   + S L     L   + G  VH  V++ G E D+ + N+L  +YS
Sbjct: 129 AFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS 188

Query: 339 KDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFV 394
           K G ++ A  +F    + ++VVS+  +I  + +  +    L  F ++ R G+ P+  TF 
Sbjct: 189 KAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFS 248

Query: 395 SLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           SL+ ACA+  +++ G +L + VM   +   P V   + +V++YG+ GL+++A     E  
Sbjct: 249 SLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG 306

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
             + + + W +L+     HG   +G+ A  K+FE
Sbjct: 307 --DPTEIAWNSLVSVFGQHG---LGKDAI-KIFE 334



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 148/314 (47%), Gaps = 22/314 (7%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K+   +  +   +  +   +T+      S L  C  LKA + G  +H  +       + 
Sbjct: 118 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 177

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            + + L  +Y+  G ++ A  VF  + +       +  LI GY E  + E  ++++ ++ 
Sbjct: 178 FVGNALTDMYSKAGDMESASNVFG-IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 236

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            +G+EP++FTF  ++KACA    +  G ++H   ++  F  D FV + LVDMY KCG + 
Sbjct: 237 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLE 296

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +A   FD IG+   I++NS+++ +  HGL  +A  IF  M+  G  P+ +   S+L   S
Sbjct: 297 QAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 356

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVV-----YS-------KDGKLDQACWLFDHMP 354
                   H  ++  G+++   +  +  VV     YS       + G+L +A    + MP
Sbjct: 357 --------HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 408

Query: 355 -QKDVVSWNSIIHA 367
            + +   W S + A
Sbjct: 409 FEPNAFGWCSFLGA 422



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)

Query: 353 MPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MPQ+++VSW ++I     +SK  EA+  F  M   G +P    F S + ACA LGS+++G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +++  + + K+GI   +   + + ++Y + G + +A   + E+M  +   V W A++
Sbjct: 61  KQMHCLAL-KFGIGSELFVGSNLEDMYSKCGAMFDA-CKVFEEMPCK-DEVSWTAMI 114


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 242/447 (54%), Gaps = 40/447 (8%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           +LI   + ++N   S+ ++ L    G + EA ++F++M  +   +  W++LISGY + G 
Sbjct: 227 KLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVS--WSALISGYEQNGM 284

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
           YE+A+ ++ +M   G+  D+     VL ACA L +++ G+ +H   +R G      + NA
Sbjct: 285 YEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNA 344

Query: 235 LVDMYA-------------------------------KCGDIVKARTVFDRIGNKDLISY 263
           L+ MY+                               KCG + KAR +FD +  KD++S+
Sbjct: 345 LIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSW 404

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLR 320
           +++++GY  H    E   +F  M L    PD   + S+++  + L     G  VH ++ +
Sbjct: 405 SAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRK 464

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
            G++ ++ +  +L+ +Y K G ++ A  +F+ M +K V SWN++I   + +     +L  
Sbjct: 465 NGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDM 524

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M+ +GV+P+ +TF+ +L AC H+G V  G   F+ M+EK+GI P V+HY CMV+L G
Sbjct: 525 FSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLG 584

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAGL++EA  +I E M        WGALL AC  HG+  MGE   +KL EL+PD++    
Sbjct: 585 RAGLLNEAEKLI-ESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHV 643

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  I+ + G  +DV  V  M+  +G+
Sbjct: 644 LLSNIFASKGDWEDVLEVRGMMKQQGV 670



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 221/435 (50%), Gaps = 57/435 (13%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLET----CYQLKAVEHGIKLHRLIPTNLLR 123
           KL  L+ +   L+S+  +  T +     S+LET    C+ LK       L ++I T  + 
Sbjct: 14  KLSKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNR--ILSQMILTGFI- 70

Query: 124 KNKGISSKLLRLY--ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
            +   +S+LL+    + F  +D + Q+FD++ N   F   WN+++  Y +    E A+ L
Sbjct: 71  SDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFM--WNTMMRAYIQSNSAEKALLL 128

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           Y  M +  V PD +T+P V++ACA   L   G+++H   ++ GF  D +V N L++MYA 
Sbjct: 129 YKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAV 188

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG++  AR +FD     D +S+NS+L GY+  G + EA  IF          D +   +I
Sbjct: 189 CGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIF----------DQMPQRNI 238

Query: 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
           +A                          +NS+IV+  K G++ +A  LF+ M +KD+VSW
Sbjct: 239 VA--------------------------SNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSW 272

Query: 362 NSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           +++I  + ++    EAL+ F +M  +G+  D +  VS+LSACAHL  VK G+ +  +++ 
Sbjct: 273 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVI- 331

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           + GI   V     ++++Y  +G I +A  +       +   + W +++  C   G+V   
Sbjct: 332 RMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLD--QISWNSMISGCMKCGSV--- 386

Query: 479 ETAAQKLFELEPDNE 493
              A+ LF++ P+ +
Sbjct: 387 -EKARALFDVMPEKD 400


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 248/447 (55%), Gaps = 13/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +    F + L+ C Q + +    +LH  +  N     + I + L+  Y+    +DEA
Sbjct: 301 GVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F  M++       W ++I G+ +    E A+ L+ QM  EGV P+ FT+  VL    
Sbjct: 361 FKLF-SMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKP 419

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              L     ++H   ++  +     V  AL+D Y K G++V++  VF  I  KD++++++
Sbjct: 420 SSLL----SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSA 475

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRR 321
           MLTG        +A ++F  ++  G  P+    SS++    ++A+ +  G Q+H   ++ 
Sbjct: 476 MLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS 535

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G    LC++++L+ +YSK G ++ A  +F    ++D+VSWNS+I     H    +AL  F
Sbjct: 536 GKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVF 595

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           + M+  G+  D +TF+ +L+AC H G V+ GE+ F++M++ Y I  ++EHY+CMV+LY R
Sbjct: 596 QIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSR 655

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG+ D+A   I+  M F ASP +W  LL AC +H N+ +G+ AA+KL  L+P++   + L
Sbjct: 656 AGMFDKAMD-IINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  I+  AG  ++   V +++ +R ++
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKVK 741



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 167/332 (50%), Gaps = 12/332 (3%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           + +DL SS   G+ V   T +  L+ C  L     G ++H     +   ++  + + L+ 
Sbjct: 91  LFKDLHSS---GLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y      ++   +FD+M  +   +  W SL+SGYA  G  ++ I L  QM+ EGV P+ 
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVS--WTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FTF  VL A A   +I  G +VH   V+ GF F  FV NAL+ MY K   +  A  VFD 
Sbjct: 206 FTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDS 265

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIG 311
           +  +D +++N M+ GY   G  +E F +F  M L G         + L   S    L   
Sbjct: 266 MVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFT 325

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHA--- 367
            Q+H  V++ G E+   I  +L+V YSK   +D+A  LF       +VV+W ++I     
Sbjct: 326 KQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQ 385

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           ++ + +A+  F QM R+GV P+H T+ ++L+ 
Sbjct: 386 NNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG 417



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 10/328 (3%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AHQ+FD+   +    +  N L+  ++      +A+ L+  +   G+  D  T    LK C
Sbjct: 57  AHQLFDETPLKDISHY--NRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L    VG +VH  +++ GF  D  V  +LVDMY K  D    R +FD +G K+++S+ 
Sbjct: 115 GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWT 174

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRR 321
           S+L+GY  +GL  E   +   M + G +P+    +++   LA+ S++  G QVH  +++ 
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G E+   + N+LI +Y K   +  A  +FD M  +D V+WN +I  ++      E    F
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M   GV      F + L  C+    +   ++L   +V K G     +    ++  Y +
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVV-KNGYEFAQDIRTALMVTYSK 353

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
              +DEA+ +     +   + V W A++
Sbjct: 354 CSSVDEAFKLF-SMADAAHNVVTWTAMI 380


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 153/446 (34%), Positives = 242/446 (54%), Gaps = 17/446 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ++ L+ C  +  +  G+ +H          +  +++ L+ LY+  G I +A +VFD  
Sbjct: 108 TLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGT 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-----EEEGVEPDQFTFPRVLKACAGL 207
             R      WN++ISGYA  G   D++ ++ +M     EEE  +PD+FTF  +LKAC  L
Sbjct: 168 VFRNLV--TWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSL 225

Query: 208 GLIRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVK-ARTVFDRIGNKDLISYN 264
           G  R G +VH   V  G     +  +  AL+DMY KC  ++  A  VF+R+  K+ I + 
Sbjct: 226 GAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWT 285

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +++ G+   G + EA ++F     +G   D   +SS++   A+ +L+  G QVH + ++ 
Sbjct: 286 TVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKT 345

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
               D+ +ANSLI +Y K G  D+A   F  +P ++VVSW ++I+    H    EA+  F
Sbjct: 346 PAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMF 405

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M  +GV PD + +++LLSAC+H G V+   R FS +     + PR EHYACMV+L GR
Sbjct: 406 EEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGR 465

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + EA  ++   M    +  VW  LL AC +H NV +G  A + L  ++ DN  N+ +
Sbjct: 466 AGELSEAKDLVA-TMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVM 524

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  I+  AG   + +RV   +  RGL
Sbjct: 525 LSNIFAEAGDWRECQRVRGAMRRRGL 550



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 207/447 (46%), Gaps = 33/447 (7%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           + +  A +L       A+  G +LH  +       +  + + L+ +YA  G +  A +VF
Sbjct: 3   RRKMIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVF 62

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLG 208
             M  R   +  W +L+ G+   G+  + + L   M     V P++FT    LKAC  +G
Sbjct: 63  GGMPERNVVS--WTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVG 120

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G  +H   VR GF     V N+LV +Y+K G I  AR VFD    ++L+++N+M++
Sbjct: 121 DMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMIS 180

Query: 269 GYIHHGLLVEAFDIFRGMILN-----GFDPDPVAISSILANASLL---RIGAQVHGWVLR 320
           GY H G   ++  +FR M           PD    +S+L     L   R GAQVH  ++ 
Sbjct: 181 GYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVI 240

Query: 321 RGVEW--DLCIANSLIVVYSK-DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
           RGV    +  +A +L+ +Y K    L  A  +F+ + QK+ + W ++I  H+++    EA
Sbjct: 241 RGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEA 300

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMV 433
           +  F +    GV  D     S++   A    V+ G ++    V+   G+   V +   ++
Sbjct: 301 MELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANS--LI 358

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVCMGETAAQKLFEL---- 488
           ++Y + GL DEA        E  A  VV W A++     HG+   G+ A     E+    
Sbjct: 359 DMYHKCGLTDEAARRF---REVPARNVVSWTAMINGLGKHGH---GQEAIHMFEEMRAEG 412

Query: 489 -EPDNEHNFELLIKIYGNAGRLDDVER 514
            EPD E  +  L+    ++G +++  R
Sbjct: 413 VEPD-EVAYLALLSACSHSGLVEECRR 438


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 236/436 (54%), Gaps = 10/436 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F+S +  C  L ++E G ++H L     +     + S L  +Y+  G + +A +VF++M
Sbjct: 108 AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W ++I GY+++GE+E+A+  + +M +E V  DQ      L AC  L   + 
Sbjct: 168 PCKDEVS--WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKF 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYI 271
           G  VH   V+ GF  D FV NAL DMY+K GD+  A  VF      ++++SY  ++ GY+
Sbjct: 226 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 285

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
               + +   +F  +   G +P+    SS++   AN + L  G Q+H  V++   + D  
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 345

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +++ L+ +Y K G L+QA   FD +     ++WNS++     H    +A+  FE+M   G
Sbjct: 346 VSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG 405

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P+ +TF+SLL+ C+H G V+ G   F  M + YG+ P  EHY+C+++L GRAG + EA
Sbjct: 406 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEA 465

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I  +M FE +   W + L AC +HG+  MG+ AA+KL +LEP N     LL  IY N
Sbjct: 466 KEFI-NRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 524

Query: 506 AGRLDDVERVERMLVD 521
             + +DV  V   + D
Sbjct: 525 ERQWEDVRSVRMRMRD 540



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 213/405 (52%), Gaps = 18/405 (4%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T   A +++T  + K +  G +LH L+          +++ L+ +Y+  G +D A ++FD
Sbjct: 5   TNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  R   +  W ++ISG ++  ++ +AI  +  M   G  P QF F   ++ACA LG I
Sbjct: 65  TMPQRNLVS--WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSI 122

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G+++H  A++FG G + FV + L DMY+KCG +  A  VF+ +  KD +S+ +M+ GY
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDL 327
              G   EA   F+ MI      D   + S L     L   + G  VH  V++ G E D+
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 242

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSKDHE---ALIYFEQMER 383
            + N+L  +YSK G ++ A  +F    + ++VVS+  +I  + +  +    L  F ++ R
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNLYGRAGLI 442
            G+ P+  TF SL+ ACA+  +++ G +L + VM   +   P V   + +V++YG+ GL+
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLL 360

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           ++A     E    + + + W +L+     HG   +G+ A  K+FE
Sbjct: 361 EQAIQAFDEIG--DPTEIAWNSLVSVFGQHG---LGKDAI-KIFE 399



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 21/331 (6%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D      V++  A    +R G+++H   +  G+    F+ N LV+MY+KCG++  A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-ILANASL--LR 309
           D +  ++L+S+ +M++G   +    EA   F GM + G  P   A SS I A ASL  + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
           +G Q+H   L+ G+  +L + ++L  +YSK G +  AC +F+ MP KD VSW ++I  +S
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           K     EAL+ F++M  + V  D     S L AC  L + K G  + S +V K G    +
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFESDI 242

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG--ETAAQK 484
                + ++Y +AG ++ A ++    ++ E   VV     Y C + G V     E     
Sbjct: 243 FVGNALTDMYSKAGDMESASNVF--GIDSECRNVV----SYTCLIDGYVETEQIEKGLSV 296

Query: 485 LFEL-----EPDNEHNFELLIKIYGNAGRLD 510
             EL     EP NE  F  LIK   N   L+
Sbjct: 297 FVELRRQGIEP-NEFTFSSLIKACANQAALE 326



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 148/314 (47%), Gaps = 22/314 (7%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K+   +  +   +  +   +T+      S L  C  LKA + G  +H  +       + 
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 242

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            + + L  +Y+  G ++ A  VF  + +       +  LI GY E  + E  ++++ ++ 
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFG-IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            +G+EP++FTF  ++KACA    +  G ++H   ++  F  D FV + LVDMY KCG + 
Sbjct: 302 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLE 361

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +A   FD IG+   I++NS+++ +  HGL  +A  IF  M+  G  P+ +   S+L   S
Sbjct: 362 QAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 421

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVV-----YS-------KDGKLDQACWLFDHMP 354
                   H  ++  G+++   +  +  VV     YS       + G+L +A    + MP
Sbjct: 422 --------HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 473

Query: 355 -QKDVVSWNSIIHA 367
            + +   W S + A
Sbjct: 474 FEPNAFGWCSFLGA 487


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 162/495 (32%), Positives = 259/495 (52%), Gaps = 21/495 (4%)

Query: 43  ITTFSSYPKSSP---TPLLT--NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
           +  F+ YPK      T ++T   Q   P+  L     ++      V   ++    T  S 
Sbjct: 159 VKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMV------VLEQVSPDPVTLVSA 212

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
              C QL     G  +H  +          +++ +L LY   G I  A  +F +M  +  
Sbjct: 213 ASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDI 272

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            +  W+S+++ YA+ G   +A+ L+ +M ++ +E ++ T    L+ACA    +  G+++H
Sbjct: 273 IS--WSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIH 330

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
             AV +GF  D  V  AL+DMY KC     A  +F+R+  KD++S+  + +GY   G+  
Sbjct: 331 KLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAH 390

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLI 334
           ++  +F  M+ NG  PD +A+  ILA +S L I  Q   +H +V + G + +  I  SLI
Sbjct: 391 KSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLI 450

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER-DGVLPDH 390
            +Y+K   +D A  +F  +   DVV+W+SII A   H +  EAL    QM     V P+ 
Sbjct: 451 ELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPND 510

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFVS+LSAC+H G ++ G ++F VMV +Y + P +EHY  MV+L GR G +D+A  MI 
Sbjct: 511 VTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMI- 569

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
             M  +A P VWGALL AC +H N+ +GE AA  LF L+P++   + LL  IY       
Sbjct: 570 NNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWH 629

Query: 511 DVERVERMLVDRGLE 525
           D  ++  ++ +  L+
Sbjct: 630 DAAKLRTLIKENRLK 644



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 188/355 (52%), Gaps = 17/355 (4%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           +    LLETC    ++    +LH       L  +  + +KL  LYA +  +  AH++F++
Sbjct: 5   DLLVKLLETCCSKISI---TQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEE 61

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV---EPDQFTFPRVLKACAGLG 208
              +T +   WN+L+  Y   G++ + ++L+ QM  + V    PD +T    LK+C+GL 
Sbjct: 62  TPCKTVYL--WNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQ 119

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            + +G+ +H   ++     D FV +AL+++Y+KCG +  A  VF      D++ + S++T
Sbjct: 120 KLELGKMIH-GFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIIT 178

Query: 269 GYIHHGLLVEAFDIF-RGMILNGFDPDPVAI---SSILANASLLRIGAQVHGWVLRRGVE 324
           GY  +G    A   F R ++L    PDPV +   +S  A  S   +G  VHG+V RRG +
Sbjct: 179 GYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD 238

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
             LC+ANS++ +Y K G +  A  LF  MP KD++SW+S++  ++ +     AL  F +M
Sbjct: 239 TKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEM 298

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
               +  + +T +S L ACA   +++ G+++  + V  YG    +     ++++Y
Sbjct: 299 IDKRIELNRVTVISALRACASSSNLEEGKQIHKLAV-NYGFELDITVSTALMDMY 352



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 159/327 (48%), Gaps = 23/327 (7%)

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   ++ G   D FV+  L  +YA+   +  A  +F+    K +  +N++L  Y   G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 275 LLVEAFDIFRGMILNGFD---PDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC 328
             VE   +F  M  +      PD   +S  L + S    L +G  +HG+ L++ ++ D+ 
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMF 140

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM-ERD 384
           + ++LI +YSK G+++ A  +F   P+ DVV W SII  + ++     AL +F +M   +
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V PD +T VS  SACA L    +G  +    V++ G   ++     ++NLYG+ G I  
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHG-FVKRRGFDTKLCLANSILNLYGKTGSIRI 259

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL----- 499
           A ++  E M ++   + W +++ ACY        ET A  LF    D       +     
Sbjct: 260 AANLFRE-MPYK-DIISWSSMV-ACYADNG---AETNALNLFNEMIDKRIELNRVTVISA 313

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLEF 526
           ++   ++  L++ +++ ++ V+ G E 
Sbjct: 314 LRACASSSNLEEGKQIHKLAVNYGFEL 340


>gi|226505108|ref|NP_001141927.1| uncharacterized protein LOC100274076 [Zea mays]
 gi|194706472|gb|ACF87320.1| unknown [Zea mays]
 gi|413938142|gb|AFW72693.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 583

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 237/451 (52%), Gaps = 10/451 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++  E+ V  G+ +   +  S+L  C Q + +  G  +HRL     L K   + + L+ +
Sbjct: 124 LEVFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDM 183

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQ 194
           Y   G +++A +VFD+ S        W  +I  Y        A AL  +M      +P+ 
Sbjct: 184 YGKCGSLEDARRVFDEDSYDKDV-VSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNA 242

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   +L ACA L   +  +  H   +R G G D  V  ALVD YAKCG +     V ++
Sbjct: 243 VTMAHLLSACASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMGVIDMVVEK 302

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
            G++   ++N+ ++GY       +A  +F+ M+     PD   ++S++   A ++ L   
Sbjct: 303 -GSRRTETWNAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQA 361

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H 368
             +H  +L RG      IA  LI +Y+K G L  A  LF  +P+KDVV+W ++I     H
Sbjct: 362 NNIHCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMH 421

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
                A++ + +M   GV+P+ +T  SLL +C+H G V  G RLF+ M   +G+ P  EH
Sbjct: 422 GHAQTAMLLYSRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEH 481

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y C+V++ GRAG I+EAY  I E M FE +  VW +LL AC LH NV  GE AA+ LFEL
Sbjct: 482 YLCLVDMLGRAGRIEEAYRRI-EDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFEL 540

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           EPDN  N+ LL K+Y  A R  DV+ + R++
Sbjct: 541 EPDNVGNYVLLGKVYAAAERWSDVQHLRRVM 571



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 152/298 (51%), Gaps = 14/298 (4%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N+L+  Y+ LG +  A+ALY QM       D  TF    KACAGL L R G  VH  A+ 
Sbjct: 11  NTLLRSYSGLGFHRQALALYSQMRH----FDHLTFTFAAKACAGLRLRRHGRAVHGRALA 66

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GFG D +V NA+V MY +C D+  A  VF  + ++  +S+N+++TG +  G    A ++
Sbjct: 67  AGFGSDAYVQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEV 126

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M+  G   D  ++ S+L   A A  L  G  VH   + RG+   + + N+LI +Y K
Sbjct: 127 FETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYGK 186

Query: 340 DGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEALIYF----EQMERDGVLPDHLTFV 394
            G L+ A  +FD     KDVVSW  +I A+  +  A   F    E +      P+ +T  
Sbjct: 187 CGSLEDARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMA 246

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
            LLSACA L S K  +   ++ + + G+   +     +V+ Y + G +     M+VEK
Sbjct: 247 HLLSACASLLSGKHAKCTHALCI-RLGLGSDIVVETALVDCYAKCGYMG-VIDMVVEK 302



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 200/435 (45%), Gaps = 21/435 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF    + C  L+   HG  +H          +  + + ++ +Y     +  A  VF  +
Sbjct: 40  TFTFAAKACAGLRLRRHGRAVHGRALAAGFGSDAYVQNAIVSMYMRCRDVAAAEAVFVAL 99

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +RT  +  WN++I+G  + G  E A+ ++  M + GV  D+ +   VL ACA    +  
Sbjct: 100 PSRTTVS--WNTVITGCVKDGRAERALEVFETMVDRGVCIDRASVVSVLPACAQARDLHT 157

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTGYI 271
           G  VH  AV  G G    V NAL+DMY KCG +  AR VFD    +KD++S+  M+  Y+
Sbjct: 158 GRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLEDARRVFDEDSYDKDVVSWTVMIGAYV 217

Query: 272 HHGLLVEAFDIFRGMILNG-FDPDPVAISSIL-ANASLL--RIGAQVHGWVLRRGVEWDL 327
            +    +AF +   M+++    P+ V ++ +L A ASLL  +     H   +R G+  D+
Sbjct: 218 LNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACASLLSGKHAKCTHALCIRLGLGSDI 277

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKD---VVSWNSIIHAHS---KDHEALIYFEQM 381
            +  +L+  Y+K G +     + D + +K      +WN+ I  ++   +  +AL  F++M
Sbjct: 278 VVETALVDCYAKCGYMG----VIDMVVEKGSRRTETWNAAISGYTQRDQGKKALALFKRM 333

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
             + V PD  T  S++ A A    +     +   ++ + G     +    +++LY +AG 
Sbjct: 334 LAESVRPDSATMASVIPAYAESADLVQANNIHCCLLVR-GCLVSTDIATGLIDLYAKAGD 392

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP-DNEHNFELLI 500
           +  A+ +   +   E   V W  ++    +HG+         ++ EL    N      L+
Sbjct: 393 LGVAWELF--QCLPEKDVVAWTTVIAGYGMHGHAQTAMLLYSRMVELGVMPNTVTIASLL 450

Query: 501 KIYGNAGRLDDVERV 515
               +AG +D+  R+
Sbjct: 451 HSCSHAGMVDEGLRL 465


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 255/470 (54%), Gaps = 26/470 (5%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           PKT+L   +  I  L +S  N ++  T+  A +L+T         G++ + LI T     
Sbjct: 11  PKTRLT--EQTILTLLNSHCNTLSKLTQIHAFILKT---------GLQNNPLILTKFTST 59

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYF 183
           +  ++S     YAT  L   +H       +  AF F  N+LI  Y++  + + ++   Y 
Sbjct: 60  SSNLNSIH---YATSFLFPPSHTTSTPTPSYDAFLF--NTLIRAYSQTRDSKSNSFLFYR 114

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
            M   GV P++FTFP VLK CAG+G +R+G+ VH   V+FGF  D  VLN L+ MY   G
Sbjct: 115 TMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLG 174

Query: 244 D--IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           +     A  VFD     D +++++M+ G++  G    A D+FR M + G  PD + + S+
Sbjct: 175 EDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSV 234

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L   A+   L +G  V  +V ++ +   + + N+LI +++K G +D+A  LF  M  + +
Sbjct: 235 LSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTI 294

Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSW S+I     H +  +A+  F++M  +G+ PD + F+ +LSAC+H G V  G   F  
Sbjct: 295 VSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGS 354

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M   + I P+VEHY CMV+L  R G + EA+   V+KM FE + ++W  ++ AC+  G +
Sbjct: 355 MERNFSIVPKVEHYGCMVDLLCRGGFVKEAFE-FVQKMPFEPNQIIWRTIITACHATGEL 413

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +GE+ +++L + EP +E N+ LL  IY    + +   +V  M+  RG++
Sbjct: 414 KLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMK 463


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 245/439 (55%), Gaps = 10/439 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TF   L  C +L  +  G  +         + +  + S LL LYA +G + +A +VF 
Sbjct: 108 STTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFV 167

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  R      W+++++G+   G+  DAI +Y +M E+GV+ D+     V++AC     +
Sbjct: 168 RMPRRDRVT--WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R+G  VH   +R G   D     +LVDMYAK G +  A  VF  + +++ +S+++M++G+
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +G   EA  +FR M  +G  PD  A+ S L   +N   L++G  VHG+++RR  +++ 
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNC 344

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERD 384
            +  + I +YSK G L  A  LF+ +  +D++ WN++I    AH +  +AL  F++M   
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PDH TF SLLSA +H G V+ G+  F  MV  + I+P  +HY C+V+L  R+GL++E
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A S ++  M+ E +  +W ALL  C  +  + +GE+ A  + EL+PD+     L+  +Y 
Sbjct: 465 A-SDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 505 NAGRLDDVERVERMLVDRG 523
              + D V +V +++ D G
Sbjct: 524 ATKKWDKVRQVRKLMKDSG 542



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 181/337 (53%), Gaps = 13/337 (3%)

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           F+       PD  TF   L ACA LG +R GE V   A   G+  D FV ++L+ +YA+ 
Sbjct: 97  FRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARW 156

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G +  A  VF R+  +D +++++M+ G++  G  ++A  ++R M  +G   D V +  ++
Sbjct: 157 GAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVI 216

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
                A  +R+GA VHG +LR G+  D+  A SL+ +Y+K+G LD AC +F  M  ++ V
Sbjct: 217 QACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV 276

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SW+++I   +++    EAL  F  M+  G+ PD    VS L AC+++G +K+G  +   +
Sbjct: 277 SWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI 336

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V ++  +  +   A  +++Y + G +  A + ++  M  +   ++W A++  C  HG   
Sbjct: 337 VRRFDFNCILGTAA--IDMYSKCGSL--ASAQMLFNMISDRDLILWNAMIACCGAHGRGQ 392

Query: 477 MGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDD 511
              T  Q++ E  + PD+   F  L+    ++G +++
Sbjct: 393 DALTLFQEMNETGMRPDHA-TFASLLSALSHSGLVEE 428



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           Q LD+I Q      ++G+         +++ C   + V  G  +H  +  + +R +   +
Sbjct: 189 QPLDAI-QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTA 247

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +YA  GL+D A +VF  M +R   +  W+++ISG+A+ G+ ++A+ L+  M+  G
Sbjct: 248 TSLVDMYAKNGLLDVACRVFGLMVHRNDVS--WSAMISGFAQNGQSDEALRLFRNMQASG 305

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           ++PD       L AC+ +G +++G  VH   VR  F F+  +  A +DMY+KCG +  A+
Sbjct: 306 IQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQ 364

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            +F+ I ++DLI +N+M+     HG   +A  +F+ M   G  PD    +S+L+  S
Sbjct: 365 MLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 255/459 (55%), Gaps = 13/459 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           S  +++++S   GI +   +   +L  C     + +G ++H  +  + L  +  + + L+
Sbjct: 213 SCFREMQAS---GIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLV 269

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEP 192
            +YA  G +D A ++FDQ+++++  A  WN++I GY+   +  ++ A   +M+E G + P
Sbjct: 270 DMYAKCGRMDYAERLFDQITDKSIVA--WNAMIGGYSLNAQSFESFAYVRKMQEGGKLHP 327

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   +L  CA L  I +G+ VH  A+R GF     +  ALVDMY +CG +  A  +F
Sbjct: 328 DWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLF 387

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLR 309
            ++  ++LIS+N+M+  Y  +G   +A  +F+ +      PD   I+SIL   A  + LR
Sbjct: 388 GQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLR 447

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-- 367
              Q+HG+V +  ++ +  ++NS++ +Y K G L +A  +FD M  KDV+SWN++I A  
Sbjct: 448 EAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYA 507

Query: 368 -HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
            H     ++  F +M   G  P+  TFVSLL +C+  G V  G   F+ M   Y I+P +
Sbjct: 508 IHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGI 567

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           EHY C+++L GR G +D A + I E+M    +  +WG+LL A    G+V + E AA+ + 
Sbjct: 568 EHYGCILDLIGRTGNLDHAKNFI-EEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHIL 626

Query: 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LE DN   + LL  +Y  AGR +DVER++  +   GLE
Sbjct: 627 SLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLE 665



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 201/380 (52%), Gaps = 14/380 (3%)

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
           L+ +N    ++ L  Y   G +  A  +F+ M  R    F WN +I G+ + G + DA+ 
Sbjct: 55  LVERNSVSLTRALSSYVERGYMKNALDLFENM--RQCDTFIWNVMIRGFVDNGLFWDAVD 112

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
            Y +ME  GV  D FT+P V+KAC GL  +  GE+VH   ++ G   D ++ N+L+ MYA
Sbjct: 113 FYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYA 172

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           K G I  A  VF  +  +DL+S+NSM++GY+  G    +   FR M  +G   D  ++  
Sbjct: 173 KIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIG 232

Query: 301 ILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           IL   SL   LR G ++H  ++R  +E D+ +  SL+ +Y+K G++D A  LFD +  K 
Sbjct: 233 ILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKS 292

Query: 358 VVSWNSIIHAHS---KDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLF 413
           +V+WN++I  +S   +  E+  Y  +M+  G L PD +T ++LL  CA L ++ +G+ + 
Sbjct: 293 IVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVH 352

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
              + + G  P +     +V++YG  G +  A  +  +    E + + W A++ +   +G
Sbjct: 353 GFAI-RNGFLPHLVLETALVDMYGECGKLKPAECLFGQMN--ERNLISWNAMIASYTKNG 409

Query: 474 NVCMGETAAQKLFE--LEPD 491
                 T  Q L    L+PD
Sbjct: 410 ENRKAMTLFQDLCNKTLKPD 429



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 210/395 (53%), Gaps = 12/395 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T+  +++ C  L  +  G ++H  +  + L  +  I + L+ +YA  G I+ A
Sbjct: 121 GVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESA 180

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF +M  R   +  WNS+ISGY  +G+   +++ + +M+  G++ D+F+   +L AC+
Sbjct: 181 EMVFREMPVRDLVS--WNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACS 238

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             G +R G+++H   +R     D  V  +LVDMYAKCG +  A  +FD+I +K ++++N+
Sbjct: 239 LEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNA 298

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILANASLLR---IGAQVHGWVLRR 321
           M+ GY  +    E+F   R M   G   PD + + ++L   + L    +G  VHG+ +R 
Sbjct: 299 MIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRN 358

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYF 378
           G    L +  +L+ +Y + GKL  A  LF  M +++++SWN++I +++K+ E   A+  F
Sbjct: 359 GFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLF 418

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           + +    + PD  T  S+L A A L S++  E++    V K  +         +V +YG+
Sbjct: 419 QDLCNKTLKPDATTIASILPAYAELASLREAEQIHGY-VTKLKLDSNTFVSNSIVFMYGK 477

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            G +  A   I ++M F+   + W  ++ A  +HG
Sbjct: 478 CGNLLRARE-IFDRMTFK-DVISWNTVIMAYAIHG 510


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/479 (31%), Positives = 260/479 (54%), Gaps = 49/479 (10%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           IT  +    S+   C    ++ H     R +   +L K++   + ++  Y   G  D   
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSA---RKVFDEILEKDERSWTTMMTGYVKNGYFDLGE 239

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           ++ + M +       +N++ISGY   G Y++A+ +  +M   G+E D+FT+P V++ACA 
Sbjct: 240 ELLEGMDDNMKLV-AYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACAT 298

Query: 207 LGLIRVGEKVHLDAVR---FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            GL+++G++VH   +R   F F FD    N+LV +Y KCG   +AR +F+++  KDL+S+
Sbjct: 299 AGLLQLGKQVHAYVLRREDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSW 354

Query: 264 NSMLTGYIHHGLLVEAFDIFRGM----ILN---------------------------GFD 292
           N++L+GY+  G + EA  IF+ M    IL+                           GF+
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 293 PDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P   A S  + + ++L     G Q H  +L+ G +  L   N+LI +Y+K G +++A  +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQV 474

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F  MP  D VSWN++I A   H    EA+  +E+M + G+ PD +T +++L+AC+H G V
Sbjct: 475 FRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLV 534

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G + F  M   Y I P  +HYA +++L  R+G   +A S ++E + F+ +  +W ALL
Sbjct: 535 DQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAES-VIESLPFKPTAEIWEALL 593

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             C +HGN+ +G  AA KLF L P+++  + LL  ++   G+ ++V RV +++ DRG++
Sbjct: 594 SGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVK 652



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 192/420 (45%), Gaps = 92/420 (21%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G I  A  VF++          +N++I+G++   +   AI L+ +M+ EG +PD F
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 196 TFPRVLKACAGLGLIRVGEK----VHLDAVRFGFGFDGFVLNALVDMYAKCGD----IVK 247
           TF  VL   AGL L+   EK     H  A++ G G+   V NALV +Y+KC      +  
Sbjct: 150 TFASVL---AGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHS 206

Query: 248 ARTVFDRIGNKD--------------------------------LISYNSMLTGYIHHGL 275
           AR VFD I  KD                                L++YN+M++GY++ G 
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGF 266

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
             EA ++ R M+ +G + D     S++   A A LL++G QVH +VLRR  ++     NS
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNS 325

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-SKDH------------------- 372
           L+ +Y K GK D+A  +F+ MP KD+VSWN+++  + S  H                   
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 373 --------------EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
                         E L  F  M+R+G  P    F   + +CA LG+   G++  + ++ 
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL- 444

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGN 474
           K G    +     ++ +Y + G+++EA      +  F   P    V W AL+ A   HG+
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEA------RQVFRTMPCLDSVSWNALIAALGQHGH 498



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 158/373 (42%), Gaps = 85/373 (22%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC--------------------------- 242
           +++   VH + + FGF     +LN L+D+Y K                            
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 243 ----GDIVKARTVFDR--IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
               GDI  AR VF++  +  +D + YN+M+TG+ H+     A ++F  M   GF PD  
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 297 AISSILANASLL----RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK----LDQACW 348
             +S+LA  +L+    +   Q H   L+ G  +   ++N+L+ VYSK       L  A  
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD-----------------------------------HE 373
           +FD + +KD  SW +++  + K+                                    E
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL    +M   G+  D  T+ S++ ACA  G +++G+++ + ++ +   S   ++   +V
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLV 327

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +LY + G  DEA + I EKM  +   V W AL     L G V  G     KL   E   +
Sbjct: 328 SLYYKCGKFDEARA-IFEKMPAK-DLVSWNAL-----LSGYVSSGHIGEAKLIFKEMKEK 380

Query: 494 HNFELLIKIYGNA 506
           +    +I I G A
Sbjct: 381 NILSWMIMISGLA 393


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 248/440 (56%), Gaps = 10/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+    L+    G +LH L     L  +  +   +  +Y+  G +++A++VFD+M
Sbjct: 110 TFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEM 169

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R      WN+ IS     G  ED++  + ++   G +PD  TF   L AC+    +  
Sbjct: 170 PHRNLET--WNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGP 227

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   +R G+G +  V N L+D Y KCG++  +  VFDR+G ++ +S++S++  Y+ 
Sbjct: 228 GCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQ 287

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +    +A  +F        +P    +SS+L   A  S +  G  V    ++  VE ++ +
Sbjct: 288 NNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFV 347

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERDG 385
           A++L+ +Y K G +D A   F+ MP++++VSWN+++  ++     ++A+   E+M    G
Sbjct: 348 ASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAG 407

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           ++P +++ +  LSAC+  G +K G ++F  M E+YG+ P  EHYAC+V+L GRAG+++ A
Sbjct: 408 IVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECA 467

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y  I ++M F  +  +WGALL AC +HG   +G+ AA+KLFEL+P +  N  +L  ++  
Sbjct: 468 YDFI-KRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAA 526

Query: 506 AGRLDDVERVERMLVDRGLE 525
            GR ++V  V   + + G++
Sbjct: 527 TGRWEEVTVVRNEMKEVGIK 546



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 185/355 (52%), Gaps = 21/355 (5%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA    ++ A  + +    R+     W +LI+G  + G +  A+  +  M  + V 
Sbjct: 48  LVNMYAKLDHLNSAKLILELAPCRSVVT--WTALIAGSVQNGCFVSALLHFSDMLSDCVR 105

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+ FTFP VLKA  GL +   G+++H  AV+ G   D FV  ++ DMY+K G +  A  V
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LL 308
           FD + +++L ++N+ ++  + HG   ++   F  ++  G  PD +   + L   S    L
Sbjct: 166 FDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGL 225

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
             G Q+HG+++R G   ++ ++N LI  Y K G+++ +  +FD M +++ VSW+S+I A+
Sbjct: 226 GPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAY 285

Query: 369 SKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            +++E   A   F +  ++ + P      S+L ACA L  ++ G  + ++ V K  +   
Sbjct: 286 VQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAV-KACVEQN 344

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL--YACYLHGN 474
           +   + +V++YG+ G ID A      +  F A P    V W ALL  YA   H N
Sbjct: 345 IFVASALVDMYGKCGSIDNA------EQAFNAMPERNLVSWNALLGGYAHQGHAN 393



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 9/301 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DS+I  +E  ++ G    + TF + L  C     +  G +LH  I  +   +N  +S+ L
Sbjct: 192 DSVIAFIEL-LRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGL 250

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           +  Y   G ++ +  VFD+M  R + +  W+SLI+ Y +  E E A  L+ +  +E +EP
Sbjct: 251 IDFYGKCGEVECSEMVFDRMGERNSVS--WSSLIAAYVQNNEEEKASCLFLRARKEDIEP 308

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
             F    VL ACAGL  I  G  V   AV+     + FV +ALVDMY KCG I  A   F
Sbjct: 309 TDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAF 368

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILANASL---L 308
           + +  ++L+S+N++L GY H G   +A  +   M    G  P  V++   L+  S    L
Sbjct: 369 NAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDL 428

Query: 309 RIGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIH 366
           + G ++   +  R GVE        L+ +  + G ++ A      MP    +S W +++ 
Sbjct: 429 KTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLG 488

Query: 367 A 367
           A
Sbjct: 489 A 489



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVL 387
           N L+ +Y+K   L+ A  + +  P + VV+W ++I    ++     AL++F  M  D V 
Sbjct: 46  NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVR 105

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+  TF  +L A   L     G++L ++ V K G+   V     + ++Y + G +++AY 
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAV-KEGLINDVFVGCSVFDMYSKLGFLNDAYK 164

Query: 448 MIVEKMEFEASPVVWGALLYACYLHG 473
           +  E          W A +    LHG
Sbjct: 165 VFDEMPHRNLE--TWNAYISNSVLHG 188


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 248/448 (55%), Gaps = 12/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           G+     T+ + L  C  L A++ G  +H R+       ++  + + LL +YA  G +D 
Sbjct: 339 GVHADGVTYVTALGACASLGALKEGKAIHSRVFECGF--QSLVVHTALLTMYAKCGELDA 396

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF+++  +    + W ++IS YA+ G  ++A+ LY QM  EG  P+++TF  VL AC
Sbjct: 397 ARAVFNRVRQKRNV-YCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAAC 455

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +  G +  G K+H          +  V NALV MYAKCG +  A++ F+  G KDL+S+N
Sbjct: 456 SSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWN 515

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLR- 320
           +M+  Y  HGL  EA D+++ M   G  PD V I+S L+  ++   L++G ++H  VL+ 
Sbjct: 516 AMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKN 575

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIY 377
           +     L +  +L+ +Y + G+L+ A  +F+ M Q+DV+SW ++  A+++   A   L  
Sbjct: 576 QSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDL 635

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           + +M   G+ P+ +TF S+L  C+H G +  G   F  M  ++ + P  EH+ CMV+L G
Sbjct: 636 YLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLG 695

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R+G + +A ++ VE M ++   V W  +L +C  H +    + AA+++ EL+P+N   + 
Sbjct: 696 RSGRLRDAEAL-VESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYS 754

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  I+  AG   +   V+  + + GL+
Sbjct: 755 LLSSIFTAAGLPQEALEVQLSMKEMGLK 782



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 226/425 (53%), Gaps = 11/425 (2%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           E +  LL+ C +L ++  G  +HR +      +N+ + + L+++Y   G I  A   F  
Sbjct: 43  ELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQN 102

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
            ++  A A  +N ++S Y + G +  A+ LY +M EEG EPD+ T+  VL +C+ +G +R
Sbjct: 103 FASIKAVAC-YNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLR 161

Query: 212 VGEKVHLDAVRF-GFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
              ++H   +       D   L NALV+MY KCG + +AR VFD I N+D +S+ SM++ 
Sbjct: 162 EAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISS 221

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           Y ++G   EA D+++ M  +G  PD +  +S L   + L  G  +H  ++   +E D  +
Sbjct: 222 YANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDF-V 280

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            ++LI +Y++ G +  A   F+ +  K VV W S++ A+ +     EAL  + +M+ +GV
Sbjct: 281 GSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGV 340

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             D +T+V+ L ACA LG++K G+ + S + E  G    V H A ++ +Y + G +D A 
Sbjct: 341 HADGVTYVTALGACASLGALKEGKAIHSRVFE-CGFQSLVVHTA-LLTMYAKCGELDAAR 398

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMG-ETAAQKLFELEPDNEHNFELLIKIYGN 505
           + +  ++  + +   W A++ A    G+     E   Q + E    NE+ F  ++    +
Sbjct: 399 A-VFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSS 457

Query: 506 AGRLD 510
           +G L+
Sbjct: 458 SGDLE 462



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 163/332 (49%), Gaps = 25/332 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G      TF+++L  C     +E G+K+H  +  + L  N  + + L+ +YA  G +
Sbjct: 437 VAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSL 496

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A   F+    +   +  WN++I  YA+ G   +A+ LY  M  +GV PD+ T    L 
Sbjct: 497 ELAKSAFEASGRKDLVS--WNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLS 554

Query: 203 ACAGLGLIRVGEKVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           ACA  G +++G ++H   ++   F     V  ALV+MY +CG +  AR++F+ +G +D++
Sbjct: 555 ACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVL 614

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           S+ +M + Y   G   +  D++  M+L+G  P+ +  +SIL   S        H  +L R
Sbjct: 615 SWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCS--------HAGLLAR 666

Query: 322 GVEWDLCIANS------------LIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAH 368
           GVE  L + +             ++ +  + G+L  A  L + MP Q D V+W +++ + 
Sbjct: 667 GVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSC 726

Query: 369 SKDHEALIYFEQMERDGVL-PDHLTFVSLLSA 399
               +A        R   L P++ +  SLLS+
Sbjct: 727 KTHSDADTAKRAARRVKELDPENTSLYSLLSS 758


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 248/440 (56%), Gaps = 10/440 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+    L+    G +LH L     L  +  +   +  +Y+  G +++A++VFD+M
Sbjct: 110 TFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEM 169

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R      WN+ IS     G  ED++  + ++   G +PD  TF   L AC+    +  
Sbjct: 170 PHRNLET--WNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGP 227

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   +R G+G +  V N L+D Y KCG++  +  VFDR+G ++ +S++S++  Y+ 
Sbjct: 228 GCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQ 287

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +    +A  +F        +P    +SS+L   A  S +  G  V    ++  VE ++ +
Sbjct: 288 NNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFV 347

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM-ERDG 385
           A++L+ +Y K G +D A   F+ MP++++VSWN+++  ++     ++A+   E+M    G
Sbjct: 348 ASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAG 407

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           ++P +++ +  LSAC+  G +K G ++F  M E+YG+ P  EHYAC+V+L GRAG+++ A
Sbjct: 408 IVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECA 467

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y  I ++M F  +  +WGALL AC +HG   +G+ AA+KLFEL+P +  N  +L  ++  
Sbjct: 468 YDFI-KRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAA 526

Query: 506 AGRLDDVERVERMLVDRGLE 525
            GR ++V  V   + + G++
Sbjct: 527 TGRWEEVTVVRNEMKEVGIK 546



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 184/355 (51%), Gaps = 21/355 (5%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA    ++ A  + +    R+     W +LI+G  + G +  A+  +  M  + V 
Sbjct: 48  LVNMYAKLDHLNSAKLILELAPCRSVVT--WTALIAGSVQNGCFVSALLHFSDMLSDCVR 105

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+ FTFP VLKA  GL +   G+++H  AV+ G   D FV  ++ DMY+K G +  A  V
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LL 308
           FD + +++L ++N+ ++  + HG   ++   F  ++  G  PD +     L   S    L
Sbjct: 166 FDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGL 225

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
             G Q+HG+++R G   ++ ++N LI  Y K G+++ +  +FD M +++ VSW+S+I A+
Sbjct: 226 GPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAY 285

Query: 369 SKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            +++E   A   F +  ++ + P      S+L ACA L  ++ G  + ++ V K  +   
Sbjct: 286 VQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAV-KACVEQN 344

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL--YACYLHGN 474
           +   + +V++YG+ G ID A      +  F A P    V W ALL  YA   H N
Sbjct: 345 IFVASALVDMYGKCGSIDNA------EQAFNAMPERNLVSWNALLGGYAHQGHAN 393



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 9/301 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           DS+I  +E  ++ G    + TF   L  C     +  G +LH  I  +   +N  +S+ L
Sbjct: 192 DSVIAFIEL-LRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGL 250

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           +  Y   G ++ +  VFD+M  R + +  W+SLI+ Y +  E E A  L+ +  +E +EP
Sbjct: 251 IDFYGKCGEVECSEMVFDRMGERNSVS--WSSLIAAYVQNNEEEKASCLFLRARKEDIEP 308

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
             F    VL ACAGL  I  G  V   AV+     + FV +ALVDMY KCG I  A   F
Sbjct: 309 TDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAF 368

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILANASL---L 308
           + +  ++L+S+N++L GY H G   +A  +   M    G  P  V++   L+  S    L
Sbjct: 369 NAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDL 428

Query: 309 RIGAQVHGWVLRR-GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIH 366
           + G ++   +  R GVE        L+ +  + G ++ A      MP    +S W +++ 
Sbjct: 429 KTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLG 488

Query: 367 A 367
           A
Sbjct: 489 A 489



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVL 387
           N L+ +Y+K   L+ A  + +  P + VV+W ++I    ++     AL++F  M  D V 
Sbjct: 46  NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVR 105

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+  TF  +L A   L     G++L ++ V K G+   V     + ++Y + G +++AY 
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAV-KEGLINDVFVGCSVFDMYSKLGFLNDAYK 164

Query: 448 MIVEKMEFEASPVVWGALLYACYLHG 473
           +  E          W A +    LHG
Sbjct: 165 VFDEMPHRNLE--TWNAYISNSVLHG 188


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 228/384 (59%), Gaps = 12/384 (3%)

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           VF     R   AF ++++I  YAE  + + +AI  Y  M   G+ P+++ FP VLKACAG
Sbjct: 62  VFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAG 121

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNS 265
           L  + +G+ VH   V+FGF  D FV N +V MY  C G +  AR +FD +   D +++ +
Sbjct: 122 LRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTA 181

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M+ GY   G    A  +FR M + G  PD V + S+L+  +    L +G  +  ++ +  
Sbjct: 182 MIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKER 241

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFE 379
           V   + ++N+L+ +++K G +D+A  LF +M ++ +VSW S+I     H +  EA+  FE
Sbjct: 242 VLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFE 301

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+  G++P+ + F+ LLSAC+H G V+ G + FS M  ++GI P++EHY CMV+L  RA
Sbjct: 302 EMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRA 361

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           GL+ EA    VE+M  E +P++W  L+ AC +HG + +GE+ +++L   EP +E N+ LL
Sbjct: 362 GLVTEALE-FVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLL 420

Query: 500 IKIYGNAGRLDDVERVERMLVDRG 523
             IY   G++ D E+  ++ V  G
Sbjct: 421 SNIY---GKMLDWEKKSKIRVAMG 441


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 241/439 (54%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A  L++C ++  ++ G  +        L  ++ + S L+ +YA+   +  A  +FD +
Sbjct: 121 TVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAV 180

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WN++I+ Y + G + + + ++  M E GV  D+ T   V+ AC  +G  ++
Sbjct: 181 EENGVVM--WNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKL 238

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ V       G   +  ++ AL+DMYAKCG++ KAR +FD + ++D++++++M++GY  
Sbjct: 239 GKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQ 298

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
                EA  +F  M L   +P+ V + S+L+  ++L     G  VH ++ R+ +   + +
Sbjct: 299 ADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIIL 358

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +L+  Y+K G +D A   F+ MP K+  +W ++I     + +  EAL  F  M +  +
Sbjct: 359 GTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASI 418

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P  +TF+ +L AC+H   V+ G R F  M + YGI PR EHY C+V+L GRAGLIDEAY
Sbjct: 419 EPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAY 478

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I   M  E + V+W ALL +C +H NV +GE A +++  L P +  ++ LL  IY + 
Sbjct: 479 QFI-RTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASV 537

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+  +   + + + DRG+E
Sbjct: 538 GQWKNAAMIRKEMKDRGIE 556



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 182/335 (54%), Gaps = 19/335 (5%)

Query: 151 QMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLG 208
           ++  R   + P +N L+      G  EDA+ L+ +M +   V PDQ T    LK+C+ + 
Sbjct: 74  RLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMC 133

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            + VG  +   AV+ G   D FVL++L+ MYA C D+  A+ +FD +    ++ +N+++T
Sbjct: 134 TLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIIT 193

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEW 325
            Y+ +G  +E  ++F+GM+  G   D + + S++     +   ++G  V  +V  +G+  
Sbjct: 194 AYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR 253

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           +  +  +LI +Y+K G+L +A  LFD M  +DVV+W+++I  +++     EAL  F +M+
Sbjct: 254 NRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQ 313

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              V P+ +T VS+LSACA LG+++ G+ + S +  K  +S  +     +V+ Y + G I
Sbjct: 314 LAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR-LSLTIILGTALVDFYAKCGCI 372

Query: 443 DEAYSMIVEKMEFEASPV----VWGALLYACYLHG 473
           D+A         FE+ PV     W AL+     +G
Sbjct: 373 DDAVE------AFESMPVKNSWTWTALIKGMATNG 401



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 175/389 (44%), Gaps = 50/389 (12%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +++  +  ++ G+     T  S++  C ++   + G  +   +    L +N+ + + L+ 
Sbjct: 204 VVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALID 263

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA  G + +A ++FD M +R   A  W+++ISGY +  +  +A+AL+ +M+   VEP+ 
Sbjct: 264 MYAKCGELGKARRLFDGMQSRDVVA--WSAMISGYTQADQCREALALFSEMQLAEVEPND 321

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL ACA LG +  G+ VH    R        +  ALVD YAKCG I  A   F+ 
Sbjct: 322 VTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFES 381

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           +  K+  ++ +++ G   +G   EA ++F  M     +P  V    +L   +++ L+  G
Sbjct: 382 MPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEG 441

Query: 312 -----AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
                +    + ++   E   C+ + L     + G +D+A      MP            
Sbjct: 442 RRHFDSMTQDYGIKPRAEHYGCVVDLL----GRAGLIDEAYQFIRTMP------------ 485

Query: 367 AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-R 425
                              + P+ + + +LLS+CA   +V++GE     +V    ++P  
Sbjct: 486 -------------------IEPNAVIWRALLSSCAVHKNVEIGEEALKQIV---SLNPSH 523

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKME 454
              Y  + N+Y   G    A +MI ++M+
Sbjct: 524 SGDYILLSNIYASVGQWKNA-AMIRKEMK 551


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 245/439 (55%), Gaps = 10/439 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TF   L  C +L  +  G  +         + +  + S LL LYA +G + +A +VF 
Sbjct: 108 STTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFV 167

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  R      W+++++G+   G+  DAI +Y +M E+GV+ D+     V++AC     +
Sbjct: 168 RMPRRDRVT--WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R+G  VH   +R G   D     +LVDMYAK G +  A  VF  + +++ +S+++M++G+
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +G   EA  +FR M  +G  PD  A+ S L   +N   L++G  VHG+++RR  +++ 
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNC 344

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERD 384
            +  + I +YSK G L  A  LF+ +  +D++ WN++I    AH +  +AL  F++M   
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PDH TF SLLSA +H G V+ G+  F  MV  + I+P  +HY C+V+L  R+GL++E
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A S ++  M+ E +  +W ALL  C  +  + +GE+ A  + EL+PD+     L+  +Y 
Sbjct: 465 A-SDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 505 NAGRLDDVERVERMLVDRG 523
              + D V +V +++ D G
Sbjct: 524 ATKKWDKVRQVRKLMKDSG 542



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 181/337 (53%), Gaps = 13/337 (3%)

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           F+       PD  TF   L ACA LG +R GE V   A   G+  D FV ++L+ +YA+ 
Sbjct: 97  FRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARW 156

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G +  A  VF R+  +D +++++M+ G++  G  ++A  ++R M  +G   D V +  ++
Sbjct: 157 GAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVI 216

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
                A  +R+GA VHG +LR G+  D+  A SL+ +Y+K+G LD AC +F  M  ++ V
Sbjct: 217 QACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV 276

Query: 360 SWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SW+++I   +++    EAL  F  M+  G+ PD    VS L AC+++G +K+G  +   +
Sbjct: 277 SWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI 336

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           V ++  +  +   A  +++Y + G +  A + ++  M  +   ++W A++  C  HG   
Sbjct: 337 VRRFDFNCILGTAA--IDMYSKCGSL--ASAQMLFNMISDRDLILWNAMIACCGAHGRGQ 392

Query: 477 MGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDD 511
              T  Q++ E  + PD+   F  L+    ++G +++
Sbjct: 393 DALTLFQEMNETGMRPDHA-TFASLLSALSHSGLVEE 428



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           Q LD+I Q      ++G+         +++ C   + V  G  +H  +  + +R +   +
Sbjct: 189 QPLDAI-QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTA 247

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +YA  GL+D A +VF  M +R   +  W+++ISG+A+ G+ ++A+ L+  M+  G
Sbjct: 248 TSLVDMYAKNGLLDVACRVFGLMVHRNDVS--WSAMISGFAQNGQSDEALRLFRNMQASG 305

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           ++PD       L AC+ +G +++G  VH   VR  F F+  +  A +DMY+KCG +  A+
Sbjct: 306 IQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQ 364

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            +F+ I ++DLI +N+M+     HG   +A  +F+ M   G  PD    +S+L+  S
Sbjct: 365 MLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 260/470 (55%), Gaps = 20/470 (4%)

Query: 69  LQALDSIIQDLESSVQ-------NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL 121
           ++ L +I  D E ++        +G+     T+  +   C + + +  G  +H  +    
Sbjct: 100 IRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVG 159

Query: 122 LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
           L ++  IS  L+ +YA  GL+  A +VFD++++R   +  WNS+ISGY+E G  +DA+ L
Sbjct: 160 LERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVS--WNSMISGYSEAGRAKDAMDL 217

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           + +MEEEG EPD+ T   +L ACA LG +  G  +   A+    G   F+ + L+ MY K
Sbjct: 218 FRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGK 277

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CGD+  AR VF+++  KD +++N+M+T Y  +G   EAF +F  M   G  PD   +S++
Sbjct: 278 CGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTV 337

Query: 302 LA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L+   +   L +G ++        ++ ++ +A  L+ +Y K G +++A  +F+ MP K+ 
Sbjct: 338 LSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNE 397

Query: 359 VSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            +WN++I A++      EAL+ F+QM    V P  +TF+ +LSAC H G V  G R F  
Sbjct: 398 ATWNAMITAYAHQGHAKEALLLFDQMP---VPPSDVTFIGVLSACVHAGLVDQGCRYFHE 454

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M   +G+ P++EHY  +++L  RAGL+DEA+  + E+   +   ++  A+L AC+   +V
Sbjct: 455 MSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFM-ERFPGKPDEIMLAAILGACHKRKDV 513

Query: 476 CMGETAAQKLFEL-EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + E A + L E+ E  N  N+ +  K+  +    D+  ++  ++ DRG+
Sbjct: 514 AIREKAMRMLMEMKEAKNAGNYVISSKVLADMKMWDESAKMRALMRDRGV 563



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 178/328 (54%), Gaps = 27/328 (8%)

Query: 160 FPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           + +N +I G   +  ++E A++LY +M+  G++PD FT+  V  AC     I VG  VH 
Sbjct: 94  YSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHS 153

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              + G   D  + ++L+ MYAKCG +  AR VFD I ++  +S+NSM++GY   G   +
Sbjct: 154 SLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKD 213

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A D+FR M   GF+PD   + S+L   A+   L  G  +    + + +     + + LI 
Sbjct: 214 AMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLIT 273

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLT 392
           +Y K G LD A  +F+ M +KD V+WN++I  +S   K  EA   F +ME+ GV PD  T
Sbjct: 274 MYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGT 333

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLIDEAYSM 448
             ++LSAC  +G++++G+R     +E +     ++H       +V++YG+ G I+EA  +
Sbjct: 334 LSTVLSACGSVGALELGKR-----IETHASEISLQHNIYVATGLVDMYGKCGHIEEALRV 388

Query: 449 IVEKMEFEASPV----VWGALLYACYLH 472
                 FEA PV     W A++ A Y H
Sbjct: 389 ------FEAMPVKNEATWNAMITA-YAH 409


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 236/446 (52%), Gaps = 10/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  + + T  S+L  C Q +    G  +H       L     +++ LL +Y+        
Sbjct: 513 GQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQST 572

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           +Q+F  M  +   +  W ++I+ Y   G ++    L  +M  +G+ PD F     L A A
Sbjct: 573 NQIFRSMGQKNVVS--WTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFA 630

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   ++ G+ VH   +R G      V NAL++MY KC ++ +AR +FDR+ NKD+IS+N+
Sbjct: 631 GDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNT 690

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ GY  +    E+F +F  M+L  F P+ V ++ IL   A+ S L  G ++H + LRRG
Sbjct: 691 LIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRG 749

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D   +N+L+ +Y K G L  A  LFD + +K+++SW  +I     H     A+  FE
Sbjct: 750 FLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFE 809

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM   G+ PD  +F ++L AC H G    G R F  M ++Y I P+++HY C+V+L  R 
Sbjct: 810 QMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRT 869

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EA   I E M  E    +W +LL+ C +H NV + E  A K+F+LEP+N   + LL
Sbjct: 870 GDLKEALEFI-ESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLL 928

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY  A R + V++++  +  RGL 
Sbjct: 929 ANIYAEAERWEAVKKLKNKIGGRGLR 954



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 205/445 (46%), Gaps = 41/445 (9%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS----KLLRLYATFGLIDE 144
           V   ++  +++ C + +++E   + H LI  +      G  S    +L+  Y   G + E
Sbjct: 95  VDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGE 154

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VFD M  + A    W SL+S YA+ G++++A++L+ QM+  GV PD      VLK  
Sbjct: 155 ARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCV 214

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +  GE +H    + G G    V NAL+ +Y++CG +  A  VFD +  +D IS+N
Sbjct: 215 SSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWN 274

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRR 321
           SM+ G   +G    A D+F  M   G +   V + S+L   + L    IG  VHG+ ++ 
Sbjct: 275 SMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKS 334

Query: 322 GVEW----------DLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSK 370
           G+ W          D  + + L+ +Y K G +  A  +FD M  K +V  WN I+  ++K
Sbjct: 335 GLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAK 394

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                E+L  F QM   G+ PD      LL     L   + G      +V K G   +  
Sbjct: 395 VGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV-KLGFGAQCA 453

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
               +++ Y ++ +I +A  ++  +M  + + + W +++  C  +G              
Sbjct: 454 VCNALISFYAKSNMIGDAV-LVFNRMPRQDT-ISWNSVISGCSSNGL------------- 498

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDV 512
               N    EL I+++     LD V
Sbjct: 499 ----NSEAIELFIRMWTQGQELDSV 519



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 196/418 (46%), Gaps = 59/418 (14%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++      + +L+    L ++  G  +H L+    L +   +++ L+ +Y+  G +++A
Sbjct: 199 GVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDA 258

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD M  R A +  WNS+I G    G +  A+ L+ +M  +G E    T   VL ACA
Sbjct: 259 ARVFDSMHPRDAIS--WNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACA 316

Query: 206 GLGLIRVGEKVHLDAVRFGF---------GFDGFVLNA-LVDMYAKCGDIVKARTVFDRI 255
           GLG   +G+ VH  +V+ G          G D   L + LV MY KCGD+  AR VFD +
Sbjct: 317 GLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAM 376

Query: 256 GNKDLIS-YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIG 311
            +K  +  +N ++ GY   G   E+  +F  M   G  PD  AIS +L   + L   R G
Sbjct: 377 SSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDG 436

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK- 370
              HG++++ G      + N+LI  Y+K   +  A  +F+ MP++D +SWNS+I   S  
Sbjct: 437 LVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSN 496

Query: 371 --DHEALIYFEQMERDGVLPDHLTFVSLLSACA-----------HLGSVKVG-------- 409
             + EA+  F +M   G   D +T +S+L ACA           H  SVK G        
Sbjct: 497 GLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLA 556

Query: 410 ----------------ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
                            ++F  M +K  +S     +  M+  Y RAGL D+   ++ E
Sbjct: 557 NALLDMYSNCSDWQSTNQIFRSMGQKNVVS-----WTAMITSYMRAGLFDKVAGLLQE 609



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 190/380 (50%), Gaps = 22/380 (5%)

Query: 84  QNGITVQTETFASLLETCYQL------KAVEHGIKLHRLIPTNLLRKNKGI-----SSKL 132
             G  + + T  S+L  C  L      KAV HG  +   +   L     GI      SKL
Sbjct: 298 SQGTEISSVTVLSVLPACAGLGYGLIGKAV-HGYSVKSGLLWGLDSVQSGIDDAALGSKL 356

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G +  A +VFD MS++      WN ++ GYA++GE+E++++L+ QM E G+ P
Sbjct: 357 VFMYVKCGDMASARRVFDAMSSK-GNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAP 415

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D+     +LK    L   R G   H   V+ GFG    V NAL+  YAK   I  A  VF
Sbjct: 416 DEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVF 475

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR--- 309
           +R+  +D IS+NS+++G   +GL  EA ++F  M   G + D V + S+L   +  R   
Sbjct: 476 NRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWF 535

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G  VHG+ ++ G+  +  +AN+L+ +YS          +F  M QK+VVSW ++I ++ 
Sbjct: 536 AGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYM 595

Query: 370 K----DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
           +    D  A +  ++M  DG+ PD     S L A A   S+K G+ +    + + G+   
Sbjct: 596 RAGLFDKVAGL-LQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTI-RNGMEKL 653

Query: 426 VEHYACMVNLYGRAGLIDEA 445
           +     ++ +Y +   ++EA
Sbjct: 654 LPVANALMEMYVKCRNVEEA 673



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
            D +   L+  V +GI        S L      ++++ G  +H     N + K   +++ 
Sbjct: 600 FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANA 659

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +Y     ++EA  +FD+++N+   +  WN+LI GY+      ++ +L+  M  +   
Sbjct: 660 LMEMYVKCRNVEEARLIFDRVTNKDVIS--WNTLIGGYSRNNFPNESFSLFSDMLLQ-FR 716

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           P+  T   +L A A +  +  G ++H  A+R GF  D +  NALVDMY KCG ++ AR +
Sbjct: 717 PNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVL 776

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
           FDR+  K+LIS+  M+ GY  HG    A  +F  M  +G +PD  + S+IL       + 
Sbjct: 777 FDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLA 836

Query: 312 AQVHGWVLRRGVEWDL--------CIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWN 362
           A+   +      E+ +        CI + L    S+ G L +A    + MP + D   W 
Sbjct: 837 AEGRRFFKAMQKEYKIEPKLKHYTCIVDLL----SRTGDLKEALEFIESMPIEPDSSIWV 892

Query: 363 SIIHA 367
           S++H 
Sbjct: 893 SLLHG 897


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 257/476 (53%), Gaps = 25/476 (5%)

Query: 61  QKAFPKTKLQA-LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           Q  FP+  ++  LD ++   ES           T +S+   C +L+ +  G +LH     
Sbjct: 246 QMGFPREAIRFFLDMVLSGFES--------DKFTLSSVFSACAELENLSLGRQLHSWAIR 297

Query: 120 NLLRKNKGISSKLLRLYATF---GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-LGEY 175
           + L  +  +   L+ +YA     G +D+  +VFD+M + +  +  W +LI+GY +     
Sbjct: 298 SGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMS--WTALITGYMQNCNLA 353

Query: 176 EDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
            +AI L+ +M  +G VEP+ FTF    KAC  +   RVG++V   A + G   +  V N+
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNS 413

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           ++ M+ KC  +  ART F+ +  K+L+SYN+ L G   +     AF++   +        
Sbjct: 414 VISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVS 473

Query: 295 PVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
               +S+L   AN   LR G Q+H  VL+ G+  +  + N+LI +YSK G +D A  +F 
Sbjct: 474 AFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFS 533

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  ++V+SW S+I   +K       L  F QM ++GV P+ +T+V++LSAC+H+G V  
Sbjct: 534 LMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSE 593

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G R F+ M E + I P++EHYACMV+L  RAGL+ +A+  I   M F+A  +VW   L A
Sbjct: 594 GWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFI-NTMPFQADVLVWRTFLGA 652

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C +H N  +G+ AA+K+ E +P+    +  L  IY +AG+ ++   + R + +R L
Sbjct: 653 CRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNL 708



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 184/359 (51%), Gaps = 21/359 (5%)

Query: 72  LDSIIQDLESSVQNGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
           L   +  L+   ++GI  + + TF+SLL++C + +    G  +H  +    +  +  + +
Sbjct: 42  LRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYN 101

Query: 131 KLLRLYATFGLIDEAHQVFDQM---SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
            L+ LY+  G + +A  VF+ M     R   +  W+++++ +   G   DAI L+ +  E
Sbjct: 102 SLISLYSKSGDLTKAKDVFETMGRFGKRDVVS--WSAMMACFGNNGREFDAIKLFVEFLE 159

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKC-GDI 245
            G+ P+ + +  V++AC+    + VG  +    ++ G F  D  V  +L+DM+ K     
Sbjct: 160 MGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-AN 304
             A  VFD++   +++++  M+T  +  G   EA   F  M+L+GF+ D   +SS+  A 
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 305 ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DGKLDQACWLFDHMPQKDVV 359
           A L  L +G Q+H W +R G+  D  +  SL+ +Y+K   DG +D    +FD M    V+
Sbjct: 280 AELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVM 337

Query: 360 SWNSIIHAHSKD----HEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLF 413
           SW ++I  + ++     EA+  F +M   G V P+H TF S   AC ++   +VG+++ 
Sbjct: 338 SWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVL 396



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 189/377 (50%), Gaps = 34/377 (9%)

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGL 209
            +SNR   A   + LI  +   G+   A++    M  +G+ P D  TF  +LK+C     
Sbjct: 21  SISNRINVA---DRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARH 77

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD---RIGNKDLISYNSM 266
            R+G+ VH   + F    D  + N+L+ +Y+K GD+ KA+ VF+   R G +D++S+++M
Sbjct: 78  FRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAM 137

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG- 322
           +  + ++G   +A  +F   +  G  P+    ++++   +N+  + +G  + G++++ G 
Sbjct: 138 MACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGH 197

Query: 323 VEWDLCIANSLIVVYSK-DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
            E D+C+  SLI ++ K +   + A  +FD M + +VV+W  +I    +     EA+ +F
Sbjct: 198 FESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF 257

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M   G   D  T  S+ SACA L ++ +G +L S  + + G++  VE    +V++Y +
Sbjct: 258 LDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAI-RSGLADDVE--CSLVDMYAK 314

Query: 439 A---GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-------L 488
               G +D+    + ++M+ + S + W AL+   Y+    C   T A  LF        +
Sbjct: 315 CSADGSVDDCRK-VFDRMQ-DHSVMSWTALITG-YMQN--CNLATEAINLFSEMITQGHV 369

Query: 489 EPDNEHNFELLIKIYGN 505
           EP N   F    K  GN
Sbjct: 370 EP-NHFTFSSAFKACGN 385


>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 447

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/385 (36%), Positives = 221/385 (57%), Gaps = 13/385 (3%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH +  +       +F WN++I  Y  L   ++A+ +Y  M   GV PD++T P VLKA 
Sbjct: 48  AHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAV 107

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +    I++G++VH   ++ G   + +  +  +++Y K GD   A  VFD      L S+N
Sbjct: 108 SQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSWN 167

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLR- 320
           ++++G    GL ++A  +F  M  +GF+PD + + S+++       L +  Q+H +V + 
Sbjct: 168 ALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQA 227

Query: 321 RGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEA 374
           +  EW  + ++NSLI +Y K G++D A  +F  M  ++V SW S+I     H H+K  EA
Sbjct: 228 KTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAK--EA 285

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F  M   GV P+++TF+ +LSAC H G+V+ G   F +M   YGI+P+++HY CMV+
Sbjct: 286 LGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVD 345

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAGL D+A  M VE+M  + + VVWG L+ AC  HGNV M E  A+ L  LEP NE 
Sbjct: 346 LLGRAGLFDDARRM-VEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEG 404

Query: 495 NFELLIKIYGNAGRLDDVERVERML 519
            + +L  IY N G   +VER+   +
Sbjct: 405 VYVVLSNIYANKGLWKEVERIRSFM 429



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 25/340 (7%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
            + + +S+P     N      T+L++  + ++   S ++ G+     T   +L+   Q  
Sbjct: 52  LTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSF 111

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           A++ G ++H       L+ N+   S  + LY   G  D AH+VFD+  N       WN+L
Sbjct: 112 AIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDE--NHEPKLGSWNAL 169

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           ISG ++ G   DAI ++  M+  G EPD  T   V+ AC  +G + +  ++H    +   
Sbjct: 170 ISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQAKT 229

Query: 226 GFDGFVL--NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
                +L  N+L+DMY KCG +  A  VF  + ++++ S+ SM+ GY  HG   EA   F
Sbjct: 230 NEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCF 289

Query: 284 RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN------------ 331
             M  +G  P+ V    +L+        A VHG  ++ G  +   + N            
Sbjct: 290 HCMRESGVKPNYVTFIGVLS--------ACVHGGTVQEGRFYFDMMKNIYGITPQLQHYG 341

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSK 370
            ++ +  + G  D A  + + MP K + V W  ++ A  K
Sbjct: 342 CMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEK 381


>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
          Length = 447

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 223/385 (57%), Gaps = 13/385 (3%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH +  +       +F WN++I  Y  L   ++A+ +Y  M   GV PD++T P VLKA 
Sbjct: 48  AHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAV 107

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +    I++G++VH   ++ G   + +  +  +++Y K GD   A  VFD      L S+N
Sbjct: 108 SQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSWN 167

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLR- 320
           ++++G    GL ++A  +F  M  +GF+PD + + S++ A  S+  L +  Q+H +V + 
Sbjct: 168 ALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQA 227

Query: 321 RGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEA 374
           +  EW  + ++NSLI +Y K G++D A  +F  M  ++V SW S+I     H H+K  EA
Sbjct: 228 KTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAK--EA 285

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F  M   GV P+++TF+ +LSAC H G+V+ G   F +M   YGI+P+++HY CMV+
Sbjct: 286 LGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVD 345

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAGL D+A  M VE+M  + + VVWG L+ AC  HGNV M E  A+ L  LEP NE 
Sbjct: 346 LLGRAGLFDDARRM-VEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEG 404

Query: 495 NFELLIKIYGNAGRLDDVERVERML 519
            + +L  IY N G   +VER+   +
Sbjct: 405 VYVVLSNIYANKGLWKEVERIRSFM 429



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 25/340 (7%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
            + + +S+P     N      T+L++  + ++   S ++ G+     T   +L+   Q  
Sbjct: 52  LTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSF 111

Query: 106 AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165
           A++ G ++H       L+ N+   S  + LY   G  D AH+VFD+  N       WN+L
Sbjct: 112 AIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDE--NHEPKLGSWNAL 169

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           ISG ++ G   DAI ++  M+  G EPD  T   V+ AC  +G + +  ++H    +   
Sbjct: 170 ISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQAKT 229

Query: 226 GFDGFVL--NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
                +L  N+L+DMY KCG +  A  VF  + ++++ S+ SM+ GY  HG   EA   F
Sbjct: 230 NEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCF 289

Query: 284 RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN------------ 331
             M  +G  P+ V    +L+        A VHG  ++ G  +   + N            
Sbjct: 290 HCMRESGVKPNYVTFIGVLS--------ACVHGGTVQEGRFYFDMMKNIYGITPQLQHYG 341

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSK 370
            ++ +  + G  D A  + + MP K + V W  ++ A  K
Sbjct: 342 CMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEK 381


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/426 (33%), Positives = 244/426 (57%), Gaps = 10/426 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S L+ C  L   ++G ++H L   + L  N      L  +YA  G ++ A +VFDQ+ 
Sbjct: 273 FGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIE 332

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                +  WN +I+G A  G  ++A++++ QM   G  PD  +   +L A      +  G
Sbjct: 333 RPDTAS--WNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQG 390

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF-DRIGNKDLISYNSMLTGYIH 272
            ++H   +++GF  D  V N+L+ MY  C D+     +F D   N D +S+N++LT  + 
Sbjct: 391 MQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQ 450

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCI 329
           H   VE   +F+ M+++  +PD + + ++L      S L++G+QVH + L+ G+  +  I
Sbjct: 451 HEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFI 510

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N LI +Y+K G L QA  +FD M  +DVVSW+++I  +++     EALI F++M+  G+
Sbjct: 511 KNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGI 570

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+H+TFV +L+AC+H+G V+ G +L++ M  ++GISP  EH +C+V+L  RAG ++EA 
Sbjct: 571 EPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAE 630

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I ++M+ E   VVW  LL AC   GNV + + AA+ + +++P N     LL  ++ ++
Sbjct: 631 RFI-DEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASS 689

Query: 507 GRLDDV 512
           G  ++ 
Sbjct: 690 GNWENA 695



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 220/449 (48%), Gaps = 24/449 (5%)

Query: 38  ISRNRITTFSSYPKSSPTPLLTN-------QKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           +S ++I   SS   +  T  L N       +  F +  L+A D   ++      +   ++
Sbjct: 13  VSNSQILATSSVVSTIKTEELMNDHINSLCKSNFYREALEAFDFAQKN------SSFKIR 66

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
             T+ SL+  C   +++  G K+H  I  +  + +  +++ +L +Y   G + +A +VFD
Sbjct: 67  LRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFD 126

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  R   ++   S+I+GY++ G+  +AI LY +M +E + PDQF F  ++KACA    +
Sbjct: 127 FMPERNLVSY--TSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G+++H   ++          NAL+ MY +   +  A  VF  I  KDLIS++S++ G+
Sbjct: 185 GLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGF 244

Query: 271 IHHGLLVEAFDIFRGMILNG-FDPDPVAI-SSILANASLLR--IGAQVHGWVLRRGVEWD 326
              G   EA    + M+  G F P+     SS+ A +SLLR   G+Q+HG  ++  +  +
Sbjct: 245 SQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGN 304

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
                SL  +Y++ G L+ A  +FD + + D  SWN II   + +    EA+  F QM  
Sbjct: 305 AIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRS 364

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G +PD ++  SLL A     ++  G ++ S ++ K+G    +     ++ +Y     + 
Sbjct: 365 SGFIPDAISLRSLLCAQTKPMALSQGMQIHSYII-KWGFLADLTVCNSLLTMYTFCSDLY 423

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLH 472
             +++  E     A  V W  +L AC  H
Sbjct: 424 CCFNLF-EDFRNNADSVSWNTILTACLQH 451


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 228/388 (58%), Gaps = 9/388 (2%)

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           +++EA ++F+ M++R +    W ++++G+ + G   +A+ ++ +M  +G+  DQ+TF  +
Sbjct: 221 MVEEARRLFEVMTDRDSIT--WTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L AC  L  +  G+++H   +R  +  + FV +ALVDMY+KC  I  A TVF R+  K++
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           IS+ +++ GY  +G   EA  +F  M  +G DPD   + S++   AN + L  GAQ H  
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCL 398

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEA 374
            L  G+   + ++N+L+ +Y K G ++ A  LFD M   D VSW +++  ++   +  E 
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  FE+M   GV PD +TF+ +LSAC+  G V+ G   F  M + +GI P  +HY CM++
Sbjct: 459 IDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           LY R+G + EA   I ++M      + WG LL AC L G++ +G+ AA+ L E++P N  
Sbjct: 519 LYSRSGKLKEAEEFI-KQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPA 577

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522
           ++ LL  ++   G+ ++V ++ R + DR
Sbjct: 578 SYVLLCSMHAAKGQWNEVAQLRRGMRDR 605



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 190/374 (50%), Gaps = 44/374 (11%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEG 189
           LL   A   L+ +   +F  M+ R   ++  N++I+G++  G +  A+ +Y  +   +  
Sbjct: 78  LLSTLAHARLLSDMEALFASMTQRDIVSY--NAVIAGFSGGGSHAQAVRVYLALLQADSS 135

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK-------- 241
           V P + T   ++ A + LG   +G++ H   +R GFG + FV + LVDMYAK        
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 242 -----------------------CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
                                  C  + +AR +F+ + ++D I++ +M+TG+  +GL  E
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 279 AFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A +IFR M   G   D     SIL      S L  G Q+H +++R   + ++ + ++L+ 
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLT 392
           +YSK   +  A  +F  M  K+++SW ++I  + ++    EA+  F +M+RDG+ PD  T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
             S++S+CA+L S++ G + F  +    G+   +     +V LYG+ G I++A+ +  ++
Sbjct: 376 LGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLF-DE 433

Query: 453 MEFEASPVVWGALL 466
           M F    V W AL+
Sbjct: 434 MSFH-DQVSWTALV 446



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI +   TF S+L  C  L A+E G ++H  I       N  + S L+ +Y+    I  
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKL 325

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF +M+ +   +  W +LI GY + G  E+A+ ++ +M+ +G++PD +T   V+ +C
Sbjct: 326 AETVFRRMTCKNIIS--WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSC 383

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L  +  G + H  A+  G      V NALV +Y KCG I  A  +FD +   D +S+ 
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 443

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           ++++GY   G   E  D+F  M+  G  PD V    +L+  S  R G    G      ++
Sbjct: 444 ALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACS--RAGFVEKGRSYFHSMQ 501

Query: 325 WDLCIA------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
            D  I         +I +YS+ GKL +A      MP   D + W +++ A
Sbjct: 502 KDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSA 551



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 103/191 (53%), Gaps = 10/191 (5%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     T  S++ +C  L ++E G + H L   + L     +S+ L+ LY   G I+
Sbjct: 366 RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +AH++FD+MS     +  W +L+SGYA+ G  ++ I L+ +M  +GV+PD  TF  VL A
Sbjct: 426 DAHRLFDEMSFHDQVS--WTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSA 483

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGF----DGFVLNALVDMYAKCGDIVKARTVFDRIG-NK 258
           C+  G +  G + +  +++   G     D +    ++D+Y++ G + +A     ++  + 
Sbjct: 484 CSRAGFVEKG-RSYFHSMQKDHGIVPIDDHY--TCMIDLYSRSGKLKEAEEFIKQMPMHP 540

Query: 259 DLISYNSMLTG 269
           D I + ++L+ 
Sbjct: 541 DAIGWGTLLSA 551



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 155/392 (39%), Gaps = 109/392 (27%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM--- 286
           ++LN L+  Y K G   +AR VFD + + +L +YN++L+   H  LL +   +F  M   
Sbjct: 42  YLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQR 101

Query: 287 -------ILNGFD-----------------------PDPVAISSILANASLL---RIGAQ 313
                  ++ GF                        P  + +S+++  AS L    +G Q
Sbjct: 102 DIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQ 161

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSK-----DGK-------------------------- 342
            H  +LR G   +  + + L+ +Y+K     D K                          
Sbjct: 162 FHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKM 221

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           +++A  LF+ M  +D ++W +++   ++   + EAL  F +M   G+  D  TF S+L+A
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTA 281

Query: 400 CAHLGSVKVGERLF---------------SVMVEKYGISPRVE---------------HY 429
           C  L +++ G+++                S +V+ Y     ++                +
Sbjct: 282 CGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISW 341

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQ-KLF 486
             ++  YG+ G  +EA  +  E       P     G+++ +C    N+   E  AQ    
Sbjct: 342 TALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSC---ANLASLEEGAQFHCL 398

Query: 487 ELEPDNEHNFEL---LIKIYGNAGRLDDVERV 515
            L     H   +   L+ +YG  G ++D  R+
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRL 430


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 236/436 (54%), Gaps = 10/436 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F+S +  C  L ++E G ++H L     +     + S L  +Y+  G + +A +VF++M
Sbjct: 108 AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W ++I GY+++GE+E+A+  + +M +E V  DQ      L AC  L   + 
Sbjct: 168 PCKDEVS--WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKF 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYI 271
           G  VH   V+ GF  D FV NAL DMY+K GD+  A  VF      ++++SY  ++ GY+
Sbjct: 226 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 285

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
               + +   +F  +   G +P+    SS++   AN + L  G Q+H  V++   + D  
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 345

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +++ L+ +Y K G L+ A   FD +     ++WNS++     H    +A+ +FE+M   G
Sbjct: 346 VSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRG 405

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P+ +TF+SLL+ C+H G V+ G   F  M + YG+ P  EHY+C+++L GRAG + EA
Sbjct: 406 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEA 465

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I  +M FE +   W + L AC +HG+  MG+ AA+KL +LEP N     LL  IY N
Sbjct: 466 KEFI-NRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 524

Query: 506 AGRLDDVERVERMLVD 521
             + +DV  V   + D
Sbjct: 525 ERQWEDVRSVRMRMRD 540



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 230/471 (48%), Gaps = 46/471 (9%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T   A +++T  + K +  G +LH L+          +++ L+ +Y+  G +D A ++FD
Sbjct: 5   TNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  R   +  W ++ISG ++  ++ +AI  +  M   G  P QF F   ++ACA LG I
Sbjct: 65  TMPQRNLVS--WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSI 122

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G+++H  A++FG G + FV + L DMY+KCG +  A  VF+ +  KD +S+ +M+ GY
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDL 327
              G   EA   F+ MI      D   + S L     L   + G  VH  V++ G E D+
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 242

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSKDHE---ALIYFEQMER 383
            + N+L  +YSK G ++ A  +F    + ++VVS+  +I  + +  +    L  F ++ R
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLF---------------SVMVEKYGISPRVEH 428
            G+ P+  TF SL+ ACA+  +++ G +L                S++V+ YG    +EH
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEH 362

Query: 429 ---------------YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYL 471
                          +  +V+++G+ GL  +A       ++    P  + + +LL  C  
Sbjct: 363 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSH 422

Query: 472 HGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERM 518
            G V  G     +  K + + P  EH +  +I + G AGRL +  E + RM
Sbjct: 423 AGLVEEGLDYFYSMDKTYGVVPGEEH-YSCVIDLLGRAGRLKEAKEFINRM 472



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 21/331 (6%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D      V++  A    +R G+++H   +  G+    F+ N LV+MY+KCG++  A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-ILANASL--LR 309
           D +  ++L+S+ +M++G   +    EA   F GM + G  P   A SS I A ASL  + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
           +G Q+H   L+ G+  +L + ++L  +YSK G +  AC +F+ MP KD VSW ++I  +S
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           K     EAL+ F++M  + V  D     S L AC  L + K G  + S +V K G    +
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFESDI 242

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG--ETAAQK 484
                + ++Y +AG ++ A ++    ++ E   VV     Y C + G V     E     
Sbjct: 243 FVGNALTDMYSKAGDMESASNVF--GIDSECRNVV----SYTCLIDGYVETEQIEKGLSV 296

Query: 485 LFEL-----EPDNEHNFELLIKIYGNAGRLD 510
             EL     EP NE  F  LIK   N   L+
Sbjct: 297 FVELRRQGIEP-NEFTFSSLIKACANQAALE 326



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 22/314 (7%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K+   +  +   +  +   +T+      S L  C  LKA + G  +H  +       + 
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 242

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            + + L  +Y+  G ++ A  VF  + +       +  LI GY E  + E  ++++ ++ 
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFG-IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            +G+EP++FTF  ++KACA    +  G ++H   ++  F  D FV + LVDMY KCG + 
Sbjct: 302 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLE 361

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            A   FD IG+   I++NS+++ +  HGL  +A   F  M+  G  P+ +   S+L   S
Sbjct: 362 HAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCS 421

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVV-----YS-------KDGKLDQACWLFDHMP 354
                   H  ++  G+++   +  +  VV     YS       + G+L +A    + MP
Sbjct: 422 --------HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 473

Query: 355 -QKDVVSWNSIIHA 367
            + +   W S + A
Sbjct: 474 FEPNAFGWCSFLGA 487


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 237/440 (53%), Gaps = 9/440 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TFA  L+       + HG  +H         ++  + + L  +Y   G  D   ++F+
Sbjct: 225 SHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFE 284

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  R      W +LIS Y ++GE E A+  + +M +  V P+++TF  V+ +CA L   
Sbjct: 285 KM--RMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAA 342

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           + GE++H   +R G      V N+++ +Y+KCG +  A  VF  I  KD+IS++++++ Y
Sbjct: 343 KWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVY 402

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDL 327
              G   EAFD    M   G  P+  A+SS+L+   + +LL  G QVH  +L  G++ + 
Sbjct: 403 SQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEA 462

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + +++I +YSK G + +A  +F+ M   D++SW ++I+    H    EA+  FE++   
Sbjct: 463 MVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSV 522

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PD++ F+ +L+AC H G V +G   F +M   Y ISP  EHY C+++L  RAG + E
Sbjct: 523 GLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSE 582

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A   I+  M F    VVW  LL AC +HG+V  G   A++L +L+P++      L  IY 
Sbjct: 583 A-EHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYA 641

Query: 505 NAGRLDDVERVERMLVDRGL 524
             GR  +   + +++  +G+
Sbjct: 642 AKGRWKEAAHIRKLMKSKGV 661



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 203/433 (46%), Gaps = 44/433 (10%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +SS L+ +Y   G I++  +VF++M  R   +  W ++I+G    G   + +  + +M  
Sbjct: 161 VSSALIDMYMKVGKIEQGCRVFEKMMTRNVVS--WTAIIAGLVHAGYNMEGLLYFSEMWR 218

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             V  D  TF   LKA A   L+  G+ +H   ++ GF    FV+N L  MY KCG    
Sbjct: 219 SKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDY 278

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
              +F+++   D++S+ ++++ Y+  G    A + F+ M  +   P+    ++++   AN
Sbjct: 279 VMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCAN 338

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            +  + G Q+HG VLR G+   L +ANS+I +YSK G L  A  +F  + +KD++SW++I
Sbjct: 339 LAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTI 398

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER---------- 411
           I  +S+     EA  Y   M R+G  P+     S+LS C  +  ++ G++          
Sbjct: 399 ISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGI 458

Query: 412 -----LFSVMVEKYGISPRVEH---------------YACMVNLYGRAGLIDEAYSMI-- 449
                + S ++  Y     V+                +  M+N Y   G   EA ++   
Sbjct: 459 DHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEK 518

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNA 506
           +  +  +   V++  +L AC   G V +G         ++ + P  EH +  LI +   A
Sbjct: 519 ISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEH-YGCLIDLLCRA 577

Query: 507 GRLDDVERVERML 519
           GRL + E + R +
Sbjct: 578 GRLSEAEHIIRSM 590



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 189/357 (52%), Gaps = 22/357 (6%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L++   Q +  E+   +H ++  N         S+L +L    G + +A  +FD+M++R 
Sbjct: 38  LIQQPIQEQPAENAYSVHNMLELN---------SELKQLVKQ-GQLCKARYMFDKMTHRD 87

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGL-IRVGE 214
             +  W +LI+GY    +  +A+ L+  M    G + DQF     LKACA LG+ I  GE
Sbjct: 88  EIS--WTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACA-LGVNICFGE 144

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            +H  +V+ G     FV +AL+DMY K G I +   VF+++  ++++S+ +++ G +H G
Sbjct: 145 LLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAG 204

Query: 275 LLVEAFDIFRGMILN--GFDPDPVAIS-SILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             +E    F  M  +  G+D    AI+    A++SLL  G  +H   +++G +    + N
Sbjct: 205 YNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVIN 264

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLP 388
           +L  +Y+K GK D    LF+ M   DVVSW ++I  +    ++  A+  F++M +  V P
Sbjct: 265 TLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSP 324

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  TF +++S+CA+L + K GE++    V + G+   +     ++ LY + GL+  A
Sbjct: 325 NKYTFAAVISSCANLAAAKWGEQIHG-HVLRLGLVNALSVANSIITLYSKCGLLKSA 380


>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 226/412 (54%), Gaps = 36/412 (8%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +FD++S    FA  W +++  Y+  G  ++ +  Y +M+ +GV PD++ FP+V +AC
Sbjct: 416 AQALFDKLSQPNVFA--WTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRAC 473

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L  + VG +VH D V  G  FD  V N+L+DMY+K GD+   R VFD +  +D++S+N
Sbjct: 474 GQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWN 533

Query: 265 SMLTGY---IHHGL----LVEAFDI----------------------FRGMILNGFDPDP 295
           SM++GY   I   L    L++ FD+                      F  M  +G   + 
Sbjct: 534 SMISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQ 593

Query: 296 VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           + IS++L  A  L+ G QVH ++ +      + + N+LI +YSK G +  A  +F +M  
Sbjct: 594 ITISTVLP-ACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMIS 652

Query: 356 KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           +D+VSWN++I     H     AL     M    V P+ +TF S LSAC+H G V  G  L
Sbjct: 653 RDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMEL 712

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           F  M   +G +P +EH++C+V+L  RA  +++A   I EKM  + S  +W ALL AC   
Sbjct: 713 FHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFI-EKMPLKPSKHIWSALLAACRAQ 771

Query: 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            NV + + AA++LF+LEP++  N+  L  IY  AGR DD   V +++ DRGL
Sbjct: 772 QNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGL 823



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 172/396 (43%), Gaps = 72/396 (18%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+      F  +   C QL  +E GI++H+ +       +  + + L+ +Y+  G +   
Sbjct: 458 GVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSG 517

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYA----------ELGEYED------------------ 177
            +VFD+M  R   +  WNS+ISGY           EL +  D                  
Sbjct: 518 RRVFDEMVERDVLS--WNSMISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGH 575

Query: 178 -AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
            A+  + +M+  G+  +Q T   VL AC     ++ G++VH    +  F     V NAL+
Sbjct: 576 LALECFSKMQRSGIMNNQITISTVLPACD----LKSGKQVHAYITKNSFSSVIPVWNALI 631

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
            MY+KCG I  A ++F  + ++DL+S+N+M+ G+  HGL   A  + R M  +   P+ V
Sbjct: 632 HMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSV 691

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
             +S L+  S        H  ++  G+E        L    ++D         F   P  
Sbjct: 692 TFTSALSACS--------HSGLVDEGME--------LFHTMTRD---------FGFTPGM 726

Query: 357 DVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV----GERL 412
           +  S    + A +   E  + F  +E+  + P    + +LL+AC    +V V     E+L
Sbjct: 727 EHFSCVVDLLARADRLEDAVGF--IEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQL 784

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           F +  E  G      +Y  + N+Y RAG  D+A ++
Sbjct: 785 FQLEPEHAG------NYVTLSNIYARAGRWDDAVAV 814


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 243/478 (50%), Gaps = 9/478 (1%)

Query: 54  PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL 113
           P   L N            D  I    S    G      T   +L+ C +   V  G+K+
Sbjct: 77  PNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKI 136

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H L+       +  + + LL LY      D+A +VFD + ++   +  W ++I+GY   G
Sbjct: 137 HSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS--WTAIITGYISSG 194

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            + +AI  + ++ E G++PD F+  +VL ACA LG    GE +       G G + FV  
Sbjct: 195 HFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVAT 254

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           +L+DMY KCG++ +A  +F  +  KD++S+++M+ GY  +GL  +A D+F  M      P
Sbjct: 255 SLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKP 314

Query: 294 DP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D    V + S  A    L +G      + R     +  +  +LI +YSK G + QA  +F
Sbjct: 315 DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374

Query: 351 DHMPQKDVVSWNSIIHAHSKD-HEALIY--FEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
             M +KD V WN+++   S + H   ++  F  +E+ G+ PD  TF+ LL  C H G V 
Sbjct: 375 TAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVN 434

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G + F+ M   + ++P +EHY CMV+L GRAGL++EA+ +I   M  + + VVWGALL 
Sbjct: 435 EGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLI-NNMPMKPNAVVWGALLG 493

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            C LH +  + E   +KL ELEP N  N+  L  IY    R ++ E++   + ++ ++
Sbjct: 494 GCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQ 551



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 202/378 (53%), Gaps = 30/378 (7%)

Query: 120 NLLRKNKGISSKLLRLYAT---------------FGLIDEAHQVFDQMSNRTAFAFPWNS 164
           N   + K I ++LLRL+                 FG  + +  VF Q+     F   WN+
Sbjct: 27  NFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFL--WNT 84

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I G      ++DAI LY  M   G  P+ FT P VLKACA    +R+G K+H   V+ G
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           +  D FV  +L+ +Y KC +   A  VFD I +K+++S+ +++TGYI  G   EA   F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 285 GMILNGFDPDPVAISSILANASLLRIGAQVHG-WVLR----RGVEWDLCIANSLIVVYSK 339
            ++  G  PD  ++  +LA  +  R+G    G W+ R     G+  ++ +A SL+ +Y K
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACA--RLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSL 396
            G L++A  +F  MP+KD+VSW+++I  ++ +    +AL  F QM+ + + PD  T V +
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           LSACA LG++ +G    S+M     +S  V   A ++++Y + G + +A+  I   M+ +
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTA-LIDMYSKCGSVTQAWE-IFTAMK-K 379

Query: 457 ASPVVWGALLYACYLHGN 474
              VVW A++    ++G+
Sbjct: 380 KDRVVWNAMMVGLSMNGH 397



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 12/293 (4%)

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL      + +H   +R     D ++LN ++      G    ++ VF ++   ++  +N+
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG 322
           M+ G +      +A  ++  M   GF P+   I  +L   +    +R+G ++H  +++ G
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-SKDH--EALIYFE 379
            + D+ +  SL+ +Y K    D A  +FD +P K+VVSW +II  + S  H  EA+  F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           ++   G+ PD  + V +L+ACA LG    GE +    +   G+   V     ++++Y + 
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWI-DRYISDSGMGRNVFVATSLLDMYVKC 263

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           G ++ A ++I   M  E   V W  ++     +G   + + A    F+++ +N
Sbjct: 264 GNLERA-NLIFSAMP-EKDIVSWSTMIQGYAFNG---LPQQALDLFFQMQSEN 311


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 250/451 (55%), Gaps = 15/451 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +GI     T +++++ C ++  +  G   H ++       N  I S L+ +Y    + 
Sbjct: 154 LDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVS 213

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL-YFQMEEEGVEPDQFTFPRVL 201
            +A Q+FD++         W ++IS +     YE+A+   Y +     + PD +TF  VL
Sbjct: 214 SDARQLFDELLEPDPVC--WTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVL 271

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC  LG +R GE++H   + +GF  +    ++LVDMY KCG + K++ +FDR+ N++ +
Sbjct: 272 TACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSV 331

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWV 318
           S++++L  Y H+G   +A ++FR M     + D  +  +++ A A L  +  G ++H   
Sbjct: 332 SWSALLAVYCHNGDYEKAVNLFREMK----EVDLYSFGTVIRACAGLAAVTPGKEIHCQY 387

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---AL 375
           +R+G   D+ + ++L+ +Y+K G ++ A  +FD MP +++++WNS+IH  +++     A+
Sbjct: 388 IRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAI 447

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE M ++G+ PD ++F+ LL AC+H G V      F +M  KYGI P VEHY CMV+L
Sbjct: 448 QIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDL 507

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH-GNVCMGETAAQKLFELEPDNEH 494
            GRAGL++EA ++I E  E      +W  LL AC     N    E  A+KL ELEP    
Sbjct: 508 LGRAGLLEEAENLI-ENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYL 566

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           ++  L  +Y   GR DD  +V  ++ +R L+
Sbjct: 567 SYVHLANVYRAVGRWDDAVKVRELMKNRQLK 597



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 221/435 (50%), Gaps = 30/435 (6%)

Query: 46  FSSYPKSSPTPLLTNQKA-FPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           +S++P    + +L   K+      L  L+SI  DL  S  N    +   +ASLL+TC ++
Sbjct: 20  YSTHPSIKLSQILQFCKSGLLNDALHLLNSI--DLYDSRIN----KPLLYASLLQTCIKV 73

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE-AHQVFDQMSNRTAFAFPWN 163
            +   G + H  +  + L  ++ + + LL LY   G       +VFD +  +   +  W 
Sbjct: 74  DSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVS--WA 131

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           S+I+GY   G+   AI L++ M + G+EP+ FT   V+KAC+ +G + +G+  H   VR 
Sbjct: 132 SMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRR 191

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           GF  +  +L++L+DMY +      AR +FD +   D + + ++++ +  + L  EA   F
Sbjct: 192 GFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFF 251

Query: 284 ----RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
               R   L    PD     S+L    N   LR G ++H  V+  G   ++   +SL+ +
Sbjct: 252 YLKHRAHRLC---PDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDM 308

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSI--IHAHSKDHE-ALIYFEQMERDGVLPDHLTF 393
           Y K G ++++  LFD M  ++ VSW+++  ++ H+ D+E A+  F +M+      D  +F
Sbjct: 309 YGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKE----VDLYSF 364

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            +++ ACA L +V  G+ +    + K G    +   A +V+LY + G I+ AY  + ++M
Sbjct: 365 GTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESA-LVDLYAKCGCINFAYR-VFDRM 422

Query: 454 EFEASPVVWGALLYA 468
               + + W ++++ 
Sbjct: 423 PTR-NLITWNSMIHG 436


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 241/439 (54%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+TC +L  +E G ++H  I     + N  + S L+ +YA  G +D A  +  + 
Sbjct: 492 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +   +  W ++I+GY +    + A+  + QM + G+  D+      + ACAGL  ++ 
Sbjct: 552 AGKDVVS--WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  A   GF  D    NALV +Y++CG I ++   F++    D I++N++++G+  
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 669

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G   EA  +F  M   G D +     S +  AS    ++ G QVH  + + G + +  +
Sbjct: 670 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 729

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
            N+LI +Y+K G +  A   F  +  K+ VSWN+II+A+SK     EAL  F+QM    V
Sbjct: 730 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 789

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+H+T V +LSAC+H+G V  G   F  M  +YG+SP+ EHY C+V++  RAGL+  A 
Sbjct: 790 RPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAK 849

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E M  +   +VW  LL AC +H N+ +GE AA  L ELEP++   + LL  +Y  +
Sbjct: 850 EFIQE-MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVS 908

Query: 507 GRLDDVERVERMLVDRGLE 525
            + D  +   + + ++G++
Sbjct: 909 KKWDARDLTRQKMKEKGVK 927



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 195/398 (48%), Gaps = 17/398 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+   + T ASL+  C     +  G +LH          N  I   LL LYA    I+ 
Sbjct: 383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A   F  +         WN ++  Y  L +  ++  ++ QM+ E + P+Q+T+P +LK C
Sbjct: 443 ALDYF--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG + +GE++H   ++  F  + +V + L+DMYAK G +  A  +  R   KD++S+ 
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRR 321
           +M+ GY  +    +A   FR M+  G   D V ++   S  A    L+ G Q+H      
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
           G   DL   N+L+ +YS+ GK++++   F+     D ++WN+++    +   + EAL  F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M R+G+  ++ TF S + A +   ++K G+++ +V + K G     E    ++++Y +
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV-ITKTGYDSETEVCNALISMYAK 739

Query: 439 AGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHG 473
            G I +A     EK   E S    V W A++ A   HG
Sbjct: 740 CGSISDA-----EKQFLEVSTKNEVSWNAIINAYSKHG 772



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 203/396 (51%), Gaps = 14/396 (3%)

Query: 82  SVQN-GITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           SV+N GI    +T   LLE C +   +++ G KLH  I    L  N  +S KL   Y   
Sbjct: 74  SVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFK 133

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A +VFD+M  RT F   WN +I   A      +   L+ +M  E V P++ TF  
Sbjct: 134 GDLYGAFKVFDEMPERTIFT--WNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG 191

Query: 200 VLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           VL+AC G  +   V E++H   +  G      V N L+D+Y++ G +  AR VFD +  K
Sbjct: 192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           D  S+ +M++G   +    EA  +F  M + G  P P A SS+L+       L IG Q+H
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 311

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DH 372
           G VL+ G   D  + N+L+ +Y   G L  A  +F +M Q+D V++N++I+  S+     
Sbjct: 312 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 371

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +A+  F++M  DG+ PD  T  SL+ AC+  G++  G++L +    K G +   +    +
Sbjct: 372 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT-KLGFASNNKIEGAL 430

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           +NLY +   I+ A    +E  E E + V+W  +L A
Sbjct: 431 LNLYAKCADIETALDYFLE-TEVE-NVVLWNVMLVA 464



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 207/405 (51%), Gaps = 25/405 (6%)

Query: 83  VQNGITVQTETFASLLETC----YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           V   +T    TF+ +LE C         VE   ++H  I    LR +  + + L+ LY+ 
Sbjct: 178 VSENVTPNEGTFSGVLEACRGGSVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSR 234

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D A +VFD +  R      W ++ISG ++     +AI L+  M   G+ P  + F 
Sbjct: 235 NGFVDLARRVFDGL--RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 292

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL AC  +  + +GE++H   ++ GF  D +V NALV +Y   G+++ A  +F  +  +
Sbjct: 293 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 352

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQV 314
           D ++YN+++ G    G   +A ++F+ M L+G +PD   ++S++    A+ +L R G Q+
Sbjct: 353 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR-GQQL 411

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KD 371
           H +  + G   +  I  +L+ +Y+K   ++ A   F     ++VV WN ++ A+      
Sbjct: 412 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDL 471

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
             +   F QM+ + ++P+  T+ S+L  C  LG +++GE++ S +++    + ++  Y C
Sbjct: 472 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TNFQLNAYVC 528

Query: 432 --MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             ++++Y + G +D A+ +++    F    VV    + A Y   N
Sbjct: 529 SVLIDMYAKLGKLDTAWDILI---RFAGKDVVSWTTMIAGYTQYN 570



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 29/338 (8%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  +      +  GI        + +  C  L+A++ G ++H     +    +    + L
Sbjct: 573 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNAL 632

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + LY+  G I+E++  F+Q       A  WN+L+SG+ + G  E+A+ ++ +M  EG++ 
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDNIA--WNALVSGFQQSGNNEEALRVFVRMNREGIDN 690

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           + FTF   +KA +    ++ G++VH    + G+  +  V NAL+ MYAKCG I  A   F
Sbjct: 691 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF 750

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
             +  K+ +S+N+++  Y  HG   EA D F  MI +   P+ V +  +L+  S      
Sbjct: 751 LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS------ 804

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
             H  ++ +G+ +      S+   Y    K +    + D + +  ++S            
Sbjct: 805 --HIGLVDKGIAY----FESMNSEYGLSPKPEHYVCVVDMLTRAGLLS------------ 846

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            A  + ++M    + PD L + +LLSAC    ++++GE
Sbjct: 847 RAKEFIQEMP---IKPDALVWRTLLSACVVHKNMEIGE 881



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 24/313 (7%)

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEY--EDAIALYFQ------MEEEGVEPDQFTF 197
           H V  ++  RT F     +  + +A +  Y  ED     FQ      +E  G+ P+  T 
Sbjct: 31  HGVPRKLKTRTVFPTLCGTRRASFAAISVYISEDE---SFQEKRIDSVENRGIRPNHQTL 87

Query: 198 PRVLKACAGL-GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
             +L+ C    G +  G K+H   ++ G   +G +   L D Y   GD+  A  VFD + 
Sbjct: 88  KWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMP 147

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGA 312
            + + ++N M+       L+ E F +F  M+     P+    S +L      +    +  
Sbjct: 148 ERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVE 207

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
           Q+H  +L +G+     + N LI +YS++G +D A  +FD +  KD  SW ++I   SK+ 
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267

Query: 373 ---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EA+  F  M   G++P    F S+LSAC  + S+++GE+L   +V K G S   + Y
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHG-LVLKLGFSS--DTY 324

Query: 430 AC--MVNLYGRAG 440
            C  +V+LY   G
Sbjct: 325 VCNALVSLYFHLG 337


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/451 (32%), Positives = 248/451 (54%), Gaps = 13/451 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +GI     + AS+L  C  L+A+E G ++H  +  + L+      S L+ +Y   G I
Sbjct: 543 ILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAI 602

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A  VF  M +R+  +   N++I+GYA+  +  +AI L+ +M+ EG+ P + TF  +L 
Sbjct: 603 EAARYVFSCMPSRSVVSM--NAIIAGYAQ-NDLVEAIDLFQEMQNEGLNPSEITFASLLD 659

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRIG-NKDL 260
           AC G   + +G ++H    + G  +DG F+  +L+ MY        A  +F      K  
Sbjct: 660 ACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKST 719

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGW 317
           I + ++++G+  +G   EA  +++ M  N   PD    +S+L   S+L     G  +H  
Sbjct: 720 ILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSL 779

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HE 373
           +   G++ D    ++++ +Y+K G +  +  +F+ M  K DV+SWNS+I   +K+     
Sbjct: 780 IFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAEN 839

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F++M+   + PD +TF+ +L+AC+H G V  G  +F +MV  Y I PR++H ACM+
Sbjct: 840 ALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMI 899

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GR G + EA   I +K+ FE + ++W  LL AC +HG+   G  AA+KL ELEP+N 
Sbjct: 900 DLLGRWGFLKEAEEFI-DKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENS 958

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             + LL  IY  +G  D+V  V R + ++GL
Sbjct: 959 SPYVLLSNIYAASGNWDEVNSVRRAMREKGL 989



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 199/344 (57%), Gaps = 8/344 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T  S+L     L+A+ +G+ +H       L  N  + S L+ +YA    ++
Sbjct: 342 KTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKME 401

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD +  R      WN+++ GYA+ G     + L+ +M   G  PD+FT+  +L A
Sbjct: 402 AAKKVFDALDERNLVL--WNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSA 459

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L  + +G ++H   ++  F ++ FV N LVDMYAKCG + +AR  F+ I N+D +S+
Sbjct: 460 CACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSW 519

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+++ GY+      EAF++FR MIL+G  PD V+++SIL   AN   L  G QVH ++++
Sbjct: 520 NAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVK 579

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH--EALIYF 378
            G++  L   +SLI +Y K G ++ A ++F  MP + VVS N+II  ++++   EA+  F
Sbjct: 580 SGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAIDLF 639

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
           ++M+ +G+ P  +TF SLL AC     + +G R    +++K G+
Sbjct: 640 QEMQNEGLNPSEITFASLLDACTGPYKLNLG-RQIHCLIQKRGL 682



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 175/342 (51%), Gaps = 40/342 (11%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S ++ LYA  G ++ A + F+Q+  R   A  WNS++S Y+  G  E  I  +  ++ 
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILA--WNSVLSMYSRQGSLEQVIWCFGSLQN 175

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV P+QFT+  VL +CA L  I +G++VH   ++ GF F+ F   +L+DMY+KCG +V 
Sbjct: 176 CGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVD 235

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           AR +FD + + D +S+ +M+ GY+  GL  EA  +F  M   G  PD VA  +++     
Sbjct: 236 ARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVG 295

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L                                G+LD AC LF  MP  +VV+WN +I  
Sbjct: 296 L--------------------------------GRLDDACDLFVQMPNTNVVAWNVMISG 323

Query: 368 HSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           H K   D EA+ +F+ M + GV     T  S+LSA A L ++  G  L      K G++ 
Sbjct: 324 HVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYG-LLVHAQAIKQGLNS 382

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            V   + ++N+Y +   + EA   + + ++ E + V+W A+L
Sbjct: 383 NVYVGSSLINMYAKCEKM-EAAKKVFDALD-ERNLVLWNAML 422



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 120/212 (56%), Gaps = 6/212 (2%)

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R  + +H   ++FGFG  G + +A+VD+YAKCG++  A   F+++  +D++++NS+L+ Y
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDL 327
              G L +    F  +   G  P+    + +L++ + L    +G QVH  V++ G E++ 
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS 217

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERD 384
               SLI +YSK G L  A  +FD +   D VSW ++I  + +     EAL  FE M++ 
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL 277

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           G++PD + FV++++AC  LG +     LF  M
Sbjct: 278 GLVPDQVAFVTVITACVGLGRLDDACDLFVQM 309



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 176/411 (42%), Gaps = 47/411 (11%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLK 105
           FS  P  S   +      + +  L     + Q++++    G+     TFASLL+ C    
Sbjct: 609 FSCMPSRSVVSMNAIIAGYAQNDLVEAIDLFQEMQNE---GLNPSEITFASLLDACTGPY 665

Query: 106 AVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP--- 161
            +  G ++H LI    LL     +   LL +Y       +A  +F +      F +P   
Sbjct: 666 KLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSE------FQYPKST 719

Query: 162 --WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             W ++ISG+ + G  E+A+ LY +M      PDQ TF  VL+AC+ L  +  G  +H  
Sbjct: 720 ILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSL 779

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVE 278
               G   D    +A+VDMYAKCGD+  +  VF+ +G+K D+IS+NSM+ G+  +G    
Sbjct: 780 IFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAEN 839

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           A  IF  M      PD V    +L   S        H   +  G E    I + ++  Y 
Sbjct: 840 ALKIFDEMKHTRIRPDDVTFLGVLTACS--------HAGRVSEGRE----IFDIMVHSYK 887

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
              +LD    + D + +     W  +  A           E +++    P+ + + +LL 
Sbjct: 888 IVPRLDHCACMIDLLGR-----WGFLKEAE----------EFIDKLNFEPNAMIWATLLG 932

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEH-YACMVNLYGRAGLIDEAYSM 448
           AC   G    G R    ++E   + P     Y  + N+Y  +G  DE  S+
Sbjct: 933 ACRIHGDDIRGRRAAEKLIE---LEPENSSPYVLLSNIYAASGNWDEVNSV 980



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 23/237 (9%)

Query: 284 RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
           R  I + FD  P      LA AS  R    +H   L+ G      + ++++ +Y+K G +
Sbjct: 79  RIKIRHPFDETP----QRLAQAS--RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNV 132

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDH--EALIY-FEQMERDGVLPDHLTFVSLLSAC 400
           + A   F+ + ++D+++WNS++  +S+    E +I+ F  ++  GV P+  T+  +LS+C
Sbjct: 133 EFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSC 192

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           A L  + +G+++   ++ K G          ++++Y + G + +A  +       +   V
Sbjct: 193 ARLVDIDLGKQVHCGVI-KMGFEFNSFCEGSLIDMYSKCGSLVDARKIF--DAVVDPDTV 249

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDD 511
            W A++ A Y+   V + E A  K+FE      L PD +  F  +I      GRLDD
Sbjct: 250 SWTAMI-AGYVQ--VGLPEEAL-KVFEDMQKLGLVPD-QVAFVTVITACVGLGRLDD 301


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 241/439 (54%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+L+TC +L  +E G ++H  I     + N  + S L+ +YA  G +D A  +  + 
Sbjct: 452 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 511

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +   +  W ++I+GY +    + A+  + QM + G+  D+      + ACAGL  ++ 
Sbjct: 512 AGKDVVS--WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 569

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  A   GF  D    NALV +Y++CG I ++   F++    D I++N++++G+  
Sbjct: 570 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 629

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G   EA  +F  M   G D +     S +  AS    ++ G QVH  + + G + +  +
Sbjct: 630 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 689

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
            N+LI +Y+K G +  A   F  +  K+ VSWN+II+A+SK     EAL  F+QM    V
Sbjct: 690 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 749

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+H+T V +LSAC+H+G V  G   F  M  +YG+SP+ EHY C+V++  RAGL+  A 
Sbjct: 750 RPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAK 809

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E M  +   +VW  LL AC +H N+ +GE AA  L ELEP++   + LL  +Y  +
Sbjct: 810 EFIQE-MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVS 868

Query: 507 GRLDDVERVERMLVDRGLE 525
            + D  +   + + ++G++
Sbjct: 869 KKWDARDLTRQKMKEKGVK 887



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 195/398 (48%), Gaps = 17/398 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+   + T ASL+  C     +  G +LH          N  I   LL LYA    I+ 
Sbjct: 343 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 402

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A   F  +         WN ++  Y  L +  ++  ++ QM+ E + P+Q+T+P +LK C
Sbjct: 403 ALDYF--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 460

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG + +GE++H   ++  F  + +V + L+DMYAK G +  A  +  R   KD++S+ 
Sbjct: 461 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 520

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRR 321
           +M+ GY  +    +A   FR M+  G   D V ++   S  A    L+ G Q+H      
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 580

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
           G   DL   N+L+ +YS+ GK++++   F+     D ++WN+++    +   + EAL  F
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 640

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M R+G+  ++ TF S + A +   ++K G+++ +V + K G     E    ++++Y +
Sbjct: 641 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV-ITKTGYDSETEVCNALISMYAK 699

Query: 439 AGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHG 473
            G I +A     EK   E S    V W A++ A   HG
Sbjct: 700 CGSISDA-----EKQFLEVSTKNEVSWNAIINAYSKHG 732



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 203/396 (51%), Gaps = 14/396 (3%)

Query: 82  SVQN-GITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           SV+N GI    +T   LLE C +   +++ G KLH  I    L  N  +S KL   Y   
Sbjct: 34  SVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFK 93

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A +VFD+M  RT F   WN +I   A      +   L+ +M  E V P++ TF  
Sbjct: 94  GDLYGAFKVFDEMPERTIFT--WNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG 151

Query: 200 VLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
           VL+AC G  +   V E++H   +  G      V N L+D+Y++ G +  AR VFD +  K
Sbjct: 152 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 211

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           D  S+ +M++G   +    EA  +F  M + G  P P A SS+L+       L IG Q+H
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 271

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DH 372
           G VL+ G   D  + N+L+ +Y   G L  A  +F +M Q+D V++N++I+  S+     
Sbjct: 272 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 331

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +A+  F++M  DG+ PD  T  SL+ AC+  G++  G++L +    K G +   +    +
Sbjct: 332 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT-KLGFASNNKIEGAL 390

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           +NLY +   I+ A    +E  E E + V+W  +L A
Sbjct: 391 LNLYAKCADIETALDYFLE-TEVE-NVVLWNVMLVA 424



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 207/405 (51%), Gaps = 25/405 (6%)

Query: 83  VQNGITVQTETFASLLETC----YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           V   +T    TF+ +LE C         VE   ++H  I    LR +  + + L+ LY+ 
Sbjct: 138 VSENVTPNEGTFSGVLEACRGGSVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSR 194

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D A +VFD +  R      W ++ISG ++     +AI L+  M   G+ P  + F 
Sbjct: 195 NGFVDLARRVFDGL--RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 252

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL AC  +  + +GE++H   ++ GF  D +V NALV +Y   G+++ A  +F  +  +
Sbjct: 253 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 312

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQV 314
           D ++YN+++ G    G   +A ++F+ M L+G +PD   ++S++    A+ +L R G Q+
Sbjct: 313 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR-GQQL 371

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKD 371
           H +  + G   +  I  +L+ +Y+K   ++ A   F     ++VV WN ++ A+      
Sbjct: 372 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDL 431

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
             +   F QM+ + ++P+  T+ S+L  C  LG +++GE++ S +++    + ++  Y C
Sbjct: 432 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TNFQLNAYVC 488

Query: 432 --MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             ++++Y + G +D A+ +++    F    VV    + A Y   N
Sbjct: 489 SVLIDMYAKLGKLDTAWDILI---RFAGKDVVSWTTMIAGYTQYN 530



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 29/338 (8%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D  +      +  GI        + +  C  L+A++ G ++H     +    +    + L
Sbjct: 533 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNAL 592

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + LY+  G I+E++  F+Q       A  WN+L+SG+ + G  E+A+ ++ +M  EG++ 
Sbjct: 593 VTLYSRCGKIEESYLAFEQTEAGDNIA--WNALVSGFQQSGNNEEALRVFVRMNREGIDN 650

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           + FTF   +KA +    ++ G++VH    + G+  +  V NAL+ MYAKCG I  A   F
Sbjct: 651 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF 710

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312
             +  K+ +S+N+++  Y  HG   EA D F  MI +   P+ V +  +L+  S      
Sbjct: 711 LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS------ 764

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
             H  ++ +G+ +      S+   Y    K +    + D + +  ++S            
Sbjct: 765 --HIGLVDKGIAY----FESMNSEYGLSPKPEHYVCVVDMLTRAGLLS------------ 806

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            A  + ++M    + PD L + +LLSAC    ++++GE
Sbjct: 807 RAKEFIQEMP---IKPDALVWRTLLSACVVHKNMEIGE 841


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/440 (32%), Positives = 235/440 (53%), Gaps = 9/440 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T TFA  L+ C  L+ V++G  +H  +          +++ L  +Y   G + +   +F+
Sbjct: 209 TYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFE 268

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            MS R   +  W SLI  Y  +G+   A+  + +M    V P++ TF  +  ACA L  +
Sbjct: 269 NMSERDVVS--WTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             GE++H + +  G      V N+++ MY+ CG++V A  +F  +  +D+IS+++++ GY
Sbjct: 327 VWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGY 386

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDL 327
              G   E F  F  M  +G  P   A++S+L+   N +++  G QVH   L  G+E + 
Sbjct: 387 CQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNS 446

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + +SLI +YSK G + +A  +F    + D+VS  ++I+    H K  EA+  FE+  + 
Sbjct: 447 TVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKV 506

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  PD +TF+S+L+AC H G + +G   F++M E Y + P  EHY CMV+L  RAG + +
Sbjct: 507 GFRPDSVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSD 566

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  MI E M ++   VVW  LL AC   G++  G  AA+++ EL+P        L  IY 
Sbjct: 567 AEKMINE-MSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYS 625

Query: 505 NAGRLDDVERVERMLVDRGL 524
           + G L++   V + +  +G+
Sbjct: 626 STGNLEEAANVRKNMKAKGV 645



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 220/475 (46%), Gaps = 46/475 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V + ++  T   + +L+ C Q   + +G  LH       L  +  + S LL +Y   G I
Sbjct: 100 VDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKI 159

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D++ +VF +M  R A    W ++I+G    G Y++ +  + +M       D +TF   LK
Sbjct: 160 DKSCRVFSEMPFRNAVT--WTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALK 217

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAGL  ++ G+ +H   +  GF     V N+L  MY +CG++     +F+ +  +D++S
Sbjct: 218 ACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVS 277

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVL 319
           + S++  Y   G  V+A + F  M  +   P+    +S+  A ASL R+  G Q+H  VL
Sbjct: 278 WTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVL 337

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
             G+   L ++NS++ +YS  G L  A  LF  M  +D++SW++II  + +     E   
Sbjct: 338 SLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFK 397

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           YF  M + G  P      SLLS   ++  ++ G ++ ++ +  +G+       + ++N+Y
Sbjct: 398 YFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALAL-CFGLEQNSTVRSSLINMY 456

Query: 437 GRAGLIDEAYSMIVE---------------------------------KMEFEASPVVWG 463
            + G I EA  +  E                                 K+ F    V + 
Sbjct: 457 SKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFI 516

Query: 464 ALLYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           ++L AC   G + +G       Q+ + + P  EH +  ++ +   AGRL D E++
Sbjct: 517 SVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEH-YGCMVDLLCRAGRLSDAEKM 570



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 16/278 (5%)

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM--ILNGFDPDPVAISS 300
           G++  AR VFD++ + D++S+ S++  Y+      EA  +F  M  + +   PD   +S 
Sbjct: 54  GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSV 113

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L     +S +  G  +H + ++  +   + + +SL+ +Y + GK+D++C +F  MP ++
Sbjct: 114 VLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRN 173

Query: 358 VVSWNSII----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
            V+W +II    HA  +  E L YF +M R   L D  TF   L ACA L  VK G+ + 
Sbjct: 174 AVTWTAIITGLVHA-GRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIH 232

Query: 414 S-VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           + V+V  +  +  V +   +  +Y   G + +   +  E M  E   V W +L+ A    
Sbjct: 233 THVIVRGFVTTLCVANS--LATMYTECGEMQDGLCLF-ENMS-ERDVVSWTSLIVAYKRI 288

Query: 473 GN-VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509
           G  V   ET  +      P NE  F  +     +  RL
Sbjct: 289 GQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 60/296 (20%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q+G        ASLL     +  +E G ++H L     L +N  + S L+ +Y+  G I 
Sbjct: 404 QSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIK 463

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA  +F +       +    ++I+GYAE G+ ++AI L+ +  + G  PD  TF  VL A
Sbjct: 464 EASMIFGETDRDDIVSL--TAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTA 521

Query: 204 CAGLGLIRVG--------EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           C   G + +G        E  ++   +  +G        +VD+  + G +  A  + + +
Sbjct: 522 CTHSGQLDLGFHYFNMMQETYNMRPAKEHYG-------CMVDLLCRAGRLSDAEKMINEM 574

Query: 256 G-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
              KD + + ++L      G      DI RG                       R  A+ 
Sbjct: 575 SWKKDDVVWTTLLIACKAKG------DIERG-----------------------RRAAE- 604

Query: 315 HGWVLRRGVEWDLCIANSLIV---VYSKDGKLDQACWLFDHMPQKDVV---SWNSI 364
                 R +E D   A +L+    +YS  G L++A  +  +M  K V+    W+SI
Sbjct: 605 ------RILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSI 654


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 243/478 (50%), Gaps = 9/478 (1%)

Query: 54  PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL 113
           P   L N            D  I    S    G      T   +L+ C +   V  G+K+
Sbjct: 77  PNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKI 136

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H L+       +  + + LL LY      D+A +VFD + ++   +  W ++I+GY   G
Sbjct: 137 HSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS--WTAIITGYISSG 194

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            + +AI  + ++ E G++PD F+  +VL ACA LG    GE +       G G + FV  
Sbjct: 195 HFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVAT 254

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           +L+DMY KCG++ +A  +F  +  KD++S+++M+ GY  +GL  +A D+F  M      P
Sbjct: 255 SLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKP 314

Query: 294 DP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
           D    V + S  A    L +G      + R     +  +  +LI +YSK G + QA  +F
Sbjct: 315 DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374

Query: 351 DHMPQKDVVSWNSIIHAHSKD-HEALIY--FEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
             M +KD V WN+++   S + H   ++  F  +E+ G+ PD  TF+ LL  C H G V 
Sbjct: 375 TAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVN 434

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G + F+ M   + ++P +EHY CMV+L GRAGL++EA+ +I   M  + + VVWGALL 
Sbjct: 435 EGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLI-NNMPMKPNAVVWGALLG 493

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            C LH +  + E   +KL ELEP N  N+  L  IY    R ++ E++   + ++ ++
Sbjct: 494 GCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQ 551



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 201/378 (53%), Gaps = 30/378 (7%)

Query: 120 NLLRKNKGISSKLLRLYAT---------------FGLIDEAHQVFDQMSNRTAFAFPWNS 164
           N   + K I ++LLRL+                 FG  + +  VF Q+     F   WN+
Sbjct: 27  NFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFL--WNT 84

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I G      ++DAI LY  M   G  P+ FT P VLKACA    +R+G K+H   V+ G
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           +  D FV  +L+ +Y KC +   A  VFD I +K+++S+ +++TGYI  G   EA   F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 285 GMILNGFDPDPVAISSILANASLLRIGAQVHG-WVLR----RGVEWDLCIANSLIVVYSK 339
            ++  G  PD  ++  +LA  +  R+G    G W+ R     G+  ++ +A SL+ +Y K
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACA--RLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSL 396
            G L++A  +F  MP+KD+VSW+++I  ++ +    +AL  F QM+ + + PD  T V +
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           LSACA LG++ +G    S+M     +S  V   A ++++Y + G + +A+  I   M+  
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTA-LIDMYSKCGSVTQAWE-IFTAMK-R 379

Query: 457 ASPVVWGALLYACYLHGN 474
              VVW A++    ++G+
Sbjct: 380 KDRVVWNAMMVGLSMNGH 397



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 12/293 (4%)

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL      + +H   +R     D ++LN ++      G    ++ VF ++   ++  +N+
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG 322
           M+ G +      +A  ++  M   GF P+   I  +L   +    +R+G ++H  +++ G
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-SKDH--EALIYFE 379
            + D+ +  SL+ +Y K    D A  +FD +P K+VVSW +II  + S  H  EA+  F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           ++   G+ PD  + V +L+ACA LG    GE +    +   G+   V     ++++Y + 
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWI-DRYISDSGMGRNVFVATSLLDMYVKC 263

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           G ++ A ++I   M  E   V W  ++     +G   + + A    F+++ +N
Sbjct: 264 GNLERA-NLIFSAMP-EKDIVSWSTMIQGYAFNG---LPQQALDLFFQMQSEN 311


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 250/453 (55%), Gaps = 29/453 (6%)

Query: 82  SVQNGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           ++ NG+  + + T  SLL  C +      G+ +H            G+ S+LLR      
Sbjct: 170 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSY------SIKHGLESELLR------ 217

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPR 199
              +  +VFD+M  R   +  WNS+I  Y EL E    AI+L+ +M    ++PD  T   
Sbjct: 218 ---DCQKVFDRMYVRDLIS--WNSIIKAY-ELNEQPLRAISLFQEMRLSRIQPDCLTLIS 271

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNK 258
           +    + LG IR    V    +R G+  +   + NA+V MYAK G +  AR VF+ + N 
Sbjct: 272 LASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNT 331

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNG----FDPDPVAISSILANASLLRIGAQV 314
           D+IS+N++++GY  +G   EA +++  M   G         V++    + A  LR G ++
Sbjct: 332 DVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKL 391

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KD 371
           HG +L+ G+  D+ +  SL  +Y K G+L+ A  LF  +P+ + V WN++I  H      
Sbjct: 392 HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHG 451

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            +A++ F++M  +GV PDH+TFV+LLSAC+H G V  G+  F +M   YGI+P ++HY C
Sbjct: 452 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC 511

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV++YGRAG ++ A   I + M  +    +WGALL AC +HGNV +G+ A++ LFE+EP+
Sbjct: 512 MVDMYGRAGQLETALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPE 570

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +     LL  +Y +AG+ + V+ +  +   +GL
Sbjct: 571 HVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 603



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 230/459 (50%), Gaps = 51/459 (11%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+T    TF S+L+ C   + V  G K+H L        +  +++ L+ LY+ +  +
Sbjct: 78  LSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAV 134

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVL 201
             A  +FD+M  R   +  WN++ISGY + G  ++A+ L       G+   D  T   +L
Sbjct: 135 GNARILFDEMPVRDMGS--WNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLL 187

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC   G    G  +H  +++ G            ++   C      + VFDR+  +DLI
Sbjct: 188 SACTEAGDFNRGVTIHSYSIKHGLE---------SELLRDC------QKVFDRMYVRDLI 232

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWV 318
           S+NS++  Y  +   + A  +F+ M L+   PD    ++++SIL+    +R    V G+ 
Sbjct: 233 SWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFT 292

Query: 319 LRRGVEW---DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
           LR+G  W   D+ I N+++V+Y+K G +D A  +F+ +P  DV+SWN+II  ++++    
Sbjct: 293 LRKG--WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFAS 350

Query: 373 EALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
           EA+  +  ME +G +  +  T+VS+L AC+  G+++ G +L   ++ K G+   V     
Sbjct: 351 EAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL-KNGLYLDVFVVTS 409

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL--- 488
           + ++YG+ G +++A S+  +     + P  W  L+     HG+   GE A     E+   
Sbjct: 410 LADMYGKCGRLEDALSLFYQIPRVNSVP--WNTLIACHGFHGH---GEKAVMLFKEMLDE 464

Query: 489 --EPDNEHNFELLIKIYGNAGRLDDVERV-ERMLVDRGL 524
             +PD+   F  L+    ++G +D+ +   E M  D G+
Sbjct: 465 GVKPDH-ITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 502



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 183/412 (44%), Gaps = 74/412 (17%)

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACA 205
             FD + NR  +A  WN +ISGY   G   + I  +   M   G+ PD  TFP VLKAC 
Sbjct: 40  HTFDHIQNRDVYA--WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR 97

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G K+H  A++FGF +D +V  +L+ +Y++   +  AR +FD +  +D+ S+N+
Sbjct: 98  ---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNA 154

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRG 322
           M++GY   G   EA  +  G+       D V + S+L+    A     G  +H + ++ G
Sbjct: 155 MISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG 210

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFE 379
           +E +L               L     +FD M  +D++SWNSII A+  + +   A+  F+
Sbjct: 211 LESEL---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQ 255

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M    + PD LT +SL S  + LG ++    +    + K      +     +V +Y + 
Sbjct: 256 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL 315

Query: 440 GLIDEA----------------------------------YSMIVEKMEFEASPVVWGAL 465
           GL+D A                                  Y+++ E+ E  A+   W ++
Sbjct: 316 GLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSV 375

Query: 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI-----KIYGNAGRLDDV 512
           L AC   G +  G     +L +    N    ++ +      +YG  GRL+D 
Sbjct: 376 LPACSQAGALRQGMKLHGRLLK----NGLYLDVFVVTSLADMYGKCGRLEDA 423


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 243/448 (54%), Gaps = 11/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G      T+ASLL  C     +  G +LH  I       +  +++ L+ +YA  G ++
Sbjct: 346 QKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLE 405

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA +VF+QM  + A +  WN+ I+     G  ++A  ++ QM  + V PD  TF  +L +
Sbjct: 406 EARKVFNQMPEKNAVS--WNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNS 463

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C        G  +H    ++G   +  V NAL+ MY +CG +  AR VF RI  +DL S+
Sbjct: 464 CTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSW 523

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+M+  Y+ HG    AFD+F      G   D     ++L   AN   L  G ++HG V +
Sbjct: 524 NAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEK 583

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS-KDH--EALIY 377
            G+E D+ I  +LI +YSK G L  A  +F ++ +KDVV WN+++ A++  DH  +AL  
Sbjct: 584 AGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALKL 643

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+QM  +GV PD  T+ S+L+ACA LG+++ G++ F   +++  +     HYACMV   G
Sbjct: 644 FQQMRLEGVNPDSATYTSVLNACARLGAIEHGKK-FHTQLKEAAMETDTRHYACMVAALG 702

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF- 496
           RA L+ EA   I E    E+  ++W +LL AC +H NV + ETA + L +++  +     
Sbjct: 703 RASLLKEAEEFIEEISS-ESDALMWESLLVACRIHHNVGLAETAVEHLLDVKAQSSPAVC 761

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
           E L+ IY  AGR +DV  ++  + + GL
Sbjct: 762 EQLMNIYAAAGRWEDVSVIKATMREAGL 789



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 224/396 (56%), Gaps = 10/396 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+      +A  L+ C Q K++  G K+H  + +     +  +++ L+ +Y+  G I+
Sbjct: 44  KRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIE 103

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A+ VF  M ++   +  WN++ISGYA  G  ++A+ L++QM+ EG++P+Q +F  +L A
Sbjct: 104 DANNVFQSMEDKDVVS--WNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSA 161

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C    ++  GE++H    + G+  D  V  AL++MY KCG +  AR VF+ +  ++++S+
Sbjct: 162 CQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSW 221

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR 320
            +M++GY+ HG   EAF +F+ +I +G  P+ V+ +SIL    N + L  G ++H ++ +
Sbjct: 222 TAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQ 281

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--HEALIYF 378
            G+E ++ + N+LI +Y++ G L  A  +FD++   + VSWN++I  + +    EA   F
Sbjct: 282 AGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGEGFMEEAFRLF 341

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M++ G  PD  T+ SLL+ CA    +  G+ L S +V +      V     ++++Y +
Sbjct: 342 RDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIV-RTAWEADVTVATALISMYAK 400

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            G ++EA  +  +  E  A  V W A +  C  HG+
Sbjct: 401 CGSLEEARKVFNQMPEKNA--VSWNAFIACCCRHGS 434



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 213/398 (53%), Gaps = 13/398 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++G      +FAS+L  C     +E G+KLH  I    L +   + + L+ +YA  G +
Sbjct: 245 IRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSL 304

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A QVFD +  R+     WN++I+GY E G  E+A  L+  M+++G +PD+FT+  +L 
Sbjct: 305 ANARQVFDNL--RSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLA 361

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA    +  G+++H   VR  +  D  V  AL+ MYAKCG + +AR VF+++  K+ +S
Sbjct: 362 ICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVS 421

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVL 319
           +N+ +     HG   EAF +F+ M  +   PD V   ++L + +       G  +HG + 
Sbjct: 422 WNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKID 481

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + G+  +  +AN+LI +Y + GKL  A  +F  + ++D+ SWN++I A   H  +  A  
Sbjct: 482 QWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFD 541

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F + + +G   D  TF+++L A A+L  +  G ++   +VEK G+   +     ++ +Y
Sbjct: 542 LFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHG-LVEKAGLEKDIRILTTLIKMY 600

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + G + +AYS+   K   E   V W A+L A Y H +
Sbjct: 601 SKCGSLRDAYSVF--KNVQEKDVVCWNAML-AAYNHSD 635


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 256/476 (53%), Gaps = 25/476 (5%)

Query: 61  QKAFPKTKLQA-LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           Q  FP+  ++  LD ++   ES           T +S+   C +L+ +  G +LH     
Sbjct: 246 QMGFPREAIRFFLDMVLSGFES--------DKFTLSSVFSACAELENLSLGKQLHSWAIR 297

Query: 120 NLLRKNKGISSKLLRLYATF---GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-LGEY 175
           + L  +  +   L+ +YA     G +D+  +VFD+M + +  +  W +LI+GY +     
Sbjct: 298 SGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS--WTALITGYMKNCNLA 353

Query: 176 EDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
            +AI L+ +M  +G VEP+ FTF    KAC  L   RVG++V   A + G   +  V N+
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANS 413

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           ++ M+ K   +  A+  F+ +  K+L+SYN+ L G   +    +AF +   +        
Sbjct: 414 VISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473

Query: 295 PVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
               +S+L   AN   +R G Q+H  V++ G+  +  + N+LI +YSK G +D A  +F+
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533

Query: 352 HMPQKDVVSWNSIIHAHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  ++V+SW S+I   +K   A   L  F QM  +GV P+ +T+V++LSAC+H+G V  
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSE 593

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G R F+ M E + I P++EHYACMV+L  RAGL+ +A+  I   M F+A  +VW   L A
Sbjct: 594 GWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFI-NTMPFQADVLVWRTFLGA 652

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           C +H N  +G+ AA+K+ EL+P+    +  L  IY  AG+ ++   + R + +R L
Sbjct: 653 CRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNL 708



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 235/504 (46%), Gaps = 56/504 (11%)

Query: 72  LDSIIQDLESSVQNGI-TVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGIS 129
           L   +  L+   ++GI  + + TF+SLL++C + +    G  +H RLI  + +  +  + 
Sbjct: 42  LRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFD-IEPDSVLY 100

Query: 130 SKLLRLYATFGLIDEAHQVFDQM---SNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
           + L+ LY+  G   +A  VF+ M     R   +  W+++++ Y   G   DAI ++ +  
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVS--WSAMMACYGNNGRELDAIKVFVEFL 158

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKC-GD 244
           E G+ P+ + +  V++AC+    + VG       ++ G F  D  V  +L+DM+ K    
Sbjct: 159 ELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENS 218

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-A 303
              A  VFD++   +++++  M+T  +  G   EA   F  M+L+GF+ D   +SS+  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 304 NASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DGKLDQACWLFDHMPQKDV 358
            A L  L +G Q+H W +R G+  D  +  SL+ +Y+K   DG +D    +FD M    V
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 359 VSWNSIIHAHSKD----HEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLF 413
           +SW ++I  + K+     EA+  F +M   G V P+H TF S   AC +L   +VG+++ 
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL 396

Query: 414 ---------------SVMVEKYGISPRVE---------------HYACMVNLYGRAGLID 443
                          + ++  +  S R+E                Y   ++   R    +
Sbjct: 397 GQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE 456

Query: 444 EAYSMIVEKMEFE--ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLI 500
           +A+ ++ E  E E   S   + +LL      G++  GE    ++ +L    N+     LI
Sbjct: 457 QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALI 516

Query: 501 KIYGNAGRLDDVERVERMLVDRGL 524
            +Y   G +D   RV   + +R +
Sbjct: 517 SMYSKCGSIDTASRVFNFMENRNV 540



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 187/377 (49%), Gaps = 34/377 (9%)

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGL 209
            +SNR   A   + LI  +   G+   A++    M  +G+ P D  TF  +LK+C     
Sbjct: 21  SVSNRINVA---DRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARD 77

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD---RIGNKDLISYNSM 266
            R+G+ VH   + F    D  + N+L+ +Y+K GD  KA  VF+   R G +D++S+++M
Sbjct: 78  FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAM 137

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG- 322
           +  Y ++G  ++A  +F   +  G  P+    ++++   +N+  + +G    G++++ G 
Sbjct: 138 MACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGH 197

Query: 323 VEWDLCIANSLIVVYSK-DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYF 378
            E D+C+  SLI ++ K +   + A  +FD M + +VV+W  +I    +     EA+ +F
Sbjct: 198 FESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF 257

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M   G   D  T  S+ SACA L ++ +G++L S  + + G+   VE    +V++Y +
Sbjct: 258 LDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAI-RSGLVDDVE--CSLVDMYAK 314

Query: 439 A---GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-------L 488
               G +D+    + ++ME + S + W AL+   Y+    C   T A  LF        +
Sbjct: 315 CSADGSVDDCRK-VFDRME-DHSVMSWTALITG-YMKN--CNLATEAINLFSEMITQGHV 369

Query: 489 EPDNEHNFELLIKIYGN 505
           EP N   F    K  GN
Sbjct: 370 EP-NHFTFSSAFKACGN 385


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 239/439 (54%), Gaps = 10/439 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S+   C  L   E G ++H +     L +N      L  +YA FG +  A + F Q+ 
Sbjct: 363 FGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIE 422

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +    +  WN++I+ +++ G+  +AI  + QM   G+ PD  TF  +L AC     I  G
Sbjct: 423 SPDLVS--WNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQG 480

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTGYIH 272
            ++H   ++ G   +  V N+L+ MY KC ++  A  VF  +  N +L+S+N++L+  + 
Sbjct: 481 TQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQ 540

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           H    E F +F+ M+ +   PD + I++IL   A  + L +G QVH + ++ G+  D+ +
Sbjct: 541 HKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSV 600

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
           +N LI +Y+K G L  A  +F      D+VSW+S+I  +++    HEAL  F  M+  GV
Sbjct: 601 SNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGV 660

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +T++ +LSAC+H+G V+ G   ++ M  + GI P  EH +CMV+L  RAG + EA 
Sbjct: 661 QPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAE 720

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           + I +KM F     +W  LL +C  HGNV + E AA+ + +L+P N     LL  I+ + 
Sbjct: 721 NFI-KKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASV 779

Query: 507 GRLDDVERVERMLVDRGLE 525
           G   +V R+  ++   G++
Sbjct: 780 GNWKEVARLRNLMKQMGVQ 798



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/422 (32%), Positives = 223/422 (52%), Gaps = 21/422 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
            + I +++ T+ +L+  C  ++++++G K+H  I  +  + +  + + +L +Y   G + 
Sbjct: 150 NSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLK 209

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + FD M  R   +  W  +ISGY++ G+  DAI +Y QM + G  PD  TF  ++KA
Sbjct: 210 DARKAFDTMQLRNVVS--WTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKA 267

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C   G I +G ++H   ++ G+       NAL+ MY + G IV A  VF  I  KDLIS+
Sbjct: 268 CCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISW 327

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSIL-ANASLL--RIGAQVHGWVL 319
            SM+TG+   G  +EA  +FR M   GF  P+     S+  A  SLL    G Q+HG   
Sbjct: 328 ASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCA 387

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           + G+  ++    SL  +Y+K G L  A   F  +   D+VSWN+II A S     +EA+ 
Sbjct: 388 KFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIY 447

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           +F QM   G++PD +TF+SLL AC    ++  G ++ S ++ K G+         ++ +Y
Sbjct: 448 FFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYII-KIGLDKEAAVCNSLLTMY 506

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL------EP 490
            +   + +A+++  +  E  A+ V W A+L AC  H     GE    +LF+L      +P
Sbjct: 507 TKCSNLHDAFNVFKDVSE-NANLVSWNAILSACLQHKQA--GEVF--RLFKLMLFSENKP 561

Query: 491 DN 492
           DN
Sbjct: 562 DN 563



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 197/384 (51%), Gaps = 12/384 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           Q  D+II  ++  +Q+G      TF S+++ C     ++ G +LH  +  +    +    
Sbjct: 238 QENDAIIMYIQM-LQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQ 296

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +Y  FG I  A  VF  +S +   +  W S+I+G+ +LG   +A+ L+  M  +G
Sbjct: 297 NALISMYTRFGQIVHASDVFTMISTKDLIS--WASMITGFTQLGYEIEALYLFRDMFRQG 354

Query: 190 V-EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
             +P++F F  V  AC  L     G ++H    +FG G + F   +L DMYAK G +  A
Sbjct: 355 FYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSA 414

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL 307
              F +I + DL+S+N+++  +   G + EA   F  M+  G  PD +   S+L A  S 
Sbjct: 415 IRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSP 474

Query: 308 LRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSI 364
           + I  G Q+H ++++ G++ +  + NSL+ +Y+K   L  A  +F  + +  ++VSWN+I
Sbjct: 475 VTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAI 534

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           + A   H +  E    F+ M      PD++T  ++L  CA L S++VG ++    V K G
Sbjct: 535 LSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSV-KSG 593

Query: 422 ISPRVEHYACMVNLYGRAGLIDEA 445
           +   V     ++++Y + G +  A
Sbjct: 594 LVVDVSVSNRLIDMYAKCGSLKHA 617



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 166/322 (51%), Gaps = 13/322 (4%)

Query: 163 NSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           NS I+   +   Y +A+  + F  +   ++ +  T+  ++ AC  +  ++ G+K+H   +
Sbjct: 125 NSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHIL 184

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +     D  + N +++MY KCG +  AR  FD +  ++++S+  M++GY  +G   +A  
Sbjct: 185 KSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAII 244

Query: 282 IFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           ++  M+ +G+ PDP+   SI+    +   + +G Q+HG V++ G +  L   N+LI +Y+
Sbjct: 245 MYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYT 304

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVL-PDHLTFV 394
           + G++  A  +F  +  KD++SW S+I   ++   + EAL  F  M R G   P+   F 
Sbjct: 305 RFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFG 364

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           S+ SAC  L   + G ++   M  K+G+   V     + ++Y + G +  A   I    +
Sbjct: 365 SVFSACRSLLEPEFGRQIHG-MCAKFGLGRNVFAGCSLCDMYAKFGFLPSA---IRAFYQ 420

Query: 455 FEASPVV-WGALLYACYLHGNV 475
            E+  +V W A++ A    G+V
Sbjct: 421 IESPDLVSWNAIIAAFSDSGDV 442



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 148/330 (44%), Gaps = 30/330 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     TF SLL  C     +  G ++H  I    L K   + + LL +Y     +
Sbjct: 453 MHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNL 512

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A  VF  +S   A    WN+++S   +  +  +   L+  M     +PD  T   +L 
Sbjct: 513 HDAFNVFKDVS-ENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILG 571

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            CA L  + VG +VH  +V+ G   D  V N L+DMYAKCG +  AR VF    N D++S
Sbjct: 572 TCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVS 631

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           ++S++ GY   GL  EA ++FR M   G  P+ V    +L+  S   IG    GW     
Sbjct: 632 WSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACS--HIGLVEEGWHFYNT 689

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD-HEALIYFEQM 381
           +E +L I                        P ++ VS    + A +   +EA  + ++M
Sbjct: 690 MEIELGIP-----------------------PTREHVSCMVDLLARAGCLYEAENFIKKM 726

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
              G  PD   + +LL++C   G+V + ER
Sbjct: 727 ---GFNPDITMWKTLLASCKTHGNVDIAER 753


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 239/424 (56%), Gaps = 11/424 (2%)

Query: 110 GIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           G ++H L I    L  +  +S   L +Y   G +  A  +F +M NR   A  WN++++ 
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVA--WNAVMTN 194

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
               G   + I  YF + E G  P+  +      ACAG   + +GE+ H   V+ GF  D
Sbjct: 195 AVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMD 254

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             VLN++VD Y KC    KAR VFD +G ++ +S+ SM+  Y  +G   EAF  + G   
Sbjct: 255 VSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARR 314

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G +P    +SS L   +    L +G  +H   +R  ++ ++ +A++L+ +Y K G ++ 
Sbjct: 315 SGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVED 374

Query: 346 ACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQMERDG-VLPDHLTFVSLLSACA 401
           A  +F   PQ+++V+WN++I  +AH  D + AL+ F+ M R G   P+++T V+++++C+
Sbjct: 375 AEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCS 434

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
             G  K G  LF  M E++GI PR EHYAC+V+L GRAG+ ++AY  +++ M    S  V
Sbjct: 435 RGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYE-VIQGMPMRPSISV 493

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WGALL AC +HG   +G  AA+KLFEL+P +  N  LL  ++ +AGR  +   + + + +
Sbjct: 494 WGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKN 553

Query: 522 RGLE 525
            G++
Sbjct: 554 VGIK 557



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 163/313 (52%), Gaps = 11/313 (3%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL-GLIRVGEKVHLDA 220
           + + ISG A+ G    A++ +  M   G+ P+ FTFP   KA A       +G ++H  A
Sbjct: 85  YTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLA 144

Query: 221 VRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           +RFG+   D FV  A +DMY K G +  AR +F  + N++++++N+++T  +  G  +E 
Sbjct: 145 IRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLET 204

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            + + G+   G  P+ V+  +     A A  L +G Q HG+V++ G E D+ + NS++  
Sbjct: 205 IEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDF 264

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTF 393
           Y K     +A  +FD M  ++ VSW S++ A+++   + EA   +    R G  P     
Sbjct: 265 YGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMV 324

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            S L+ CA L  + +G  L +V V +  I   +   + +V++YG+ G +++A  +  E  
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAV-RSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383

Query: 454 EFEASPVVWGALL 466
             + + V W A++
Sbjct: 384 --QRNLVTWNAMI 394



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 55/316 (17%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +S L TC  L  +  G  LH +   + +  N  ++S L+ +Y   G +++A Q+F +   
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQ 384

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 213
           R      WN++I GYA +G+ ++A+ ++  M   G   P+  T   V+ +C+  GL + G
Sbjct: 385 RNLVT--WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDG 442

Query: 214 EKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNKDLIS-YNSMLTGY 270
            ++  + +R  FG +        +VD+  + G   +A  V   +  +  IS + ++L   
Sbjct: 443 YEL-FETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGAC 501

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDP------VAISSILANASLLRIGAQVHGWVLRRGVE 324
             HG      ++ R      F+ DP      V +S++ A+A        +   +   G++
Sbjct: 502 KMHG----KTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFE---- 379
            D                           P    V+W +++H   +KD +  +Y E    
Sbjct: 558 KD---------------------------PGCSWVTWKNVVHVFRAKDTKHEMYNEIQAL 590

Query: 380 ------QMERDGVLPD 389
                 QM+  G +PD
Sbjct: 591 LSKLRKQMQAAGYMPD 606


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/488 (32%), Positives = 256/488 (52%), Gaps = 43/488 (8%)

Query: 78  DLESSVQNGITVQTETFASLLET--CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           DL SS+ +   V   +   LL++   + L  V+ G ++H  +       +  + + L+  
Sbjct: 111 DLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITY 170

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQ 194
           Y+    +D + +VFD+M+ R   +  WNS+ISGY++ G YED   LY +M +  G  P+ 
Sbjct: 171 YSKCYDLDLSRKVFDRMTKRDVVS--WNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNG 228

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            T   VL+AC     +  G +VH   V      D  V NAL+ +YAKCG +  AR +FD 
Sbjct: 229 VTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDE 288

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM---ILN---------------------- 289
           +  KD ++Y ++++G + HG + ++ ++FRGM   IL+                      
Sbjct: 289 MSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLV 348

Query: 290 ------GFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
                 GF P+ V +SS+L+     S L+ G ++H + ++ G   ++ +A ++I +Y+K 
Sbjct: 349 REMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKS 408

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G L  A  +FD    + +V W +II A   H   + AL  F +M + G+ PD +TF ++L
Sbjct: 409 GYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVL 468

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
           +ACAH G V     +F  M +KYGI P VEHYAC+V   G+A  + EA    V KM  E 
Sbjct: 469 AACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEF-VSKMPIEP 527

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           S  VWGALL+   +  +V +G++    LFE+EP+N  N+ ++  +Y  AGR  + + V  
Sbjct: 528 SAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRE 587

Query: 518 MLVDRGLE 525
            +   GL+
Sbjct: 588 RMNKVGLQ 595



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 237/476 (49%), Gaps = 52/476 (10%)

Query: 94  FASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  LL    +L+      +LH RLI  ++  +N  ++SKL+ LY+    +  A  VFDQ+
Sbjct: 27  YGHLLHHLTELRLPLQAKQLHARLILFSVTPENY-LASKLVALYSKTNHLAFARYVFDQI 85

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL--I 210
            ++  F++  N+++  Y+    + DA+ L+  +    +  +  +   +LK+ +   L  +
Sbjct: 86  PHKNTFSY--NAMLISYSLHNRHGDALDLFSSLASSNL-VNNISITCLLKSLSSFTLSDV 142

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           ++G++VH   +R GF  D FV NAL+  Y+KC D+  +R VFDR+  +D++S+NSM++GY
Sbjct: 143 KLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGY 202

Query: 271 IHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
              GL  +   ++R M+  +GF P+ V + S+L        L  G +VH +++   VE D
Sbjct: 203 SQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEID 262

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV--------------------------- 359
           + + N+LI +Y+K G LD A  LFD M +KD V                           
Sbjct: 263 ISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKT 322

Query: 360 ----SWNSIIHA--HSKDHEALI-YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
               +WN++I     +  HE ++    +M+  G  P+ +T  S+LS  A+  S+K G+ +
Sbjct: 323 QILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEI 382

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            S  + K G    +     ++++Y ++G +  A  +  +    + S V+W A++ A  +H
Sbjct: 383 HSYAI-KIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSK--DRSLVIWTAIISAYAVH 439

Query: 473 GNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDRGLE 525
           G+  +      ++ +  ++PD    F  ++    + G +D   E  E M    G++
Sbjct: 440 GDANLALGLFHEMLKQGIQPD-PVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQ 494


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 250/450 (55%), Gaps = 10/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+     TF+SLL +  + + +E+  ++H  I  + +  +  ++S L+  Y     +
Sbjct: 328 ISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGV 387

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++F Q ++     F   ++ISGY   G   DA+ ++  + +  + P++ T   +L 
Sbjct: 388 SMAQKIFSQCNSVDVVVF--TAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILP 445

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
              GL  +++G ++H   ++ GF     +  A++DMYAKCG +  A  +F R+  +D++S
Sbjct: 446 VIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVS 505

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +NSM+T          A DIFR M ++G   D V+IS+ L   AN      G  +HG+++
Sbjct: 506 WNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMI 565

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           +  +  D+   ++LI +Y+K G L  A  +FD M +K++VSWNSII A   H K  ++L 
Sbjct: 566 KHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLC 625

Query: 377 YFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
            F +M E+ G  PD +TF+ ++S C H+G V  G R F  M + YGI P+ EHYAC+V+L
Sbjct: 626 LFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDL 685

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           +GRAG + EAY   V+ M F     VWG LL A  LH NV + + A+ +L +L+P N   
Sbjct: 686 FGRAGRLSEAYE-TVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGY 744

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + L+   + N G  + V +V  ++ +R ++
Sbjct: 745 YVLISNAHANTGEWESVTKVRSLMKEREVQ 774



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 249/470 (52%), Gaps = 18/470 (3%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
            K  A DS+I+       + I+    TF  +L  C     ++ G++LH L+  + L    
Sbjct: 211 AKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEG 270

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            I + LL +Y+  G  D+A ++F  MS   A    WN +ISGY + G  E+++  +++M 
Sbjct: 271 SIKNSLLSMYSKCGRFDDAIKLFRMMSR--ADTVTWNCMISGYVQSGLMEESLIFFYEMI 328

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
             GV PD  TF  +L + +    +    ++H   +R     D F+ +AL+D Y KC  + 
Sbjct: 329 SSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVS 388

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
            A+ +F +  + D++ + +M++GY+H+GL ++A ++FR ++     P+ + + SIL    
Sbjct: 389 MAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIG 448

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
               L++G ++HG+++++G +    I  ++I +Y+K G+++ A  +F  + ++D+VSWNS
Sbjct: 449 GLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNS 508

Query: 364 IIH--AHSKDHEALI-YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I   A S +  A I  F QM   G+  D ++  + LSACA+L S   G+ +   M+ K+
Sbjct: 509 MITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMI-KH 567

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG----NVC 476
            ++  V   + ++++Y + G +  A + + + M+ E + V W +++ A   HG    ++C
Sbjct: 568 SLALDVYSESTLIDMYAKCGNLKAAMN-VFDTMK-EKNIVSWNSIIAAYGNHGKLKDSLC 625

Query: 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER-MLVDRGLE 525
           +     +K     PD +  F  +I +  + G +D+  R  R M  D G++
Sbjct: 626 LFHEMVEKSGN-RPD-QITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQ 673



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 6/309 (1%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL+ C  L  +  G ++H  +  N +  +     ++L +YA  G      ++F ++ +R 
Sbjct: 37  LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRL 96

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
           +   PWNS+IS +  +G    A+A YF+M   GV PD  TFP ++KAC  L   +  E +
Sbjct: 97  SSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFL 156

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
                  G   + FV ++L+  Y + G I  A  +FDR+  KD + +N ML GY   G  
Sbjct: 157 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGAS 216

Query: 277 VEAFDIFRGMILNGFDPDPV---AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
                 F  M ++   P+ V    + S+ A+  L+ +G Q+HG V+  G++++  I NSL
Sbjct: 217 DSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSL 276

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
           + +YSK G+ D A  LF  M + D V+WN +I  + +     E+LI+F +M   GVLPD 
Sbjct: 277 LSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDA 336

Query: 391 LTFVSLLSA 399
           +TF SLL +
Sbjct: 337 ITFSSLLPS 345



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 197/390 (50%), Gaps = 11/390 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++    TF  L++ C  LK  +    L   + +  +  N+ ++S L++ Y  +G ID A
Sbjct: 129 GVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVA 188

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD++  +      WN +++GYA+ G  +  I  +  M  + + P+  TF  VL  CA
Sbjct: 189 GKLFDRVLQKDCVI--WNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCA 246

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              LI +G ++H   V  G  F+G + N+L+ MY+KCG    A  +F  +   D +++N 
Sbjct: 247 SKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNC 306

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG 322
           M++GY+  GL+ E+   F  MI +G  PD +  SS+L + S    L    Q+H +++R  
Sbjct: 307 MISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHS 366

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFE 379
           +  D+ + ++LI  Y K   +  A  +F      DVV + ++I  +  +    +AL  F 
Sbjct: 367 ISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFR 426

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            + +  + P+ +T VS+L     L ++K+G  L   +++K G   R      ++++Y + 
Sbjct: 427 WLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKC 485

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           G ++ AY +     + +   V W +++  C
Sbjct: 486 GRMNLAYEIFGRLSKRDI--VSWNSMITRC 513


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 241/422 (57%), Gaps = 10/422 (2%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           +G ++H     N    N  + + L+ +YA    +    + FD M+++   +  W +  +G
Sbjct: 279 NGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLIS--WTTAAAG 336

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           YA+   Y  A+ L  Q++ EG++ D      +L AC GL  +   +++H   +R G   D
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-D 395

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             + N ++D+Y +CG I  A  +F+ I  KD++S+ SM++ Y+H+GL  +A ++F  M  
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 289 NGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G +PD V + SIL+   + S L+ G ++HG+++R+G   +  I+N+L+ +Y++ G ++ 
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVED 515

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F     ++++ W ++I A   H     A+  F +M+ + ++PDH+TF++LL AC+H
Sbjct: 516 AYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSH 575

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V  G+    +M  +Y + P  EHY C+V+L GR   ++EAY  IV+ M+ E +P VW
Sbjct: 576 SGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQ-IVKSMQNEPTPEVW 634

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            ALL AC +H N  +GE AA+KL EL+ DN  N+ L+  ++   GR  DVE V   +   
Sbjct: 635 CALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGS 694

Query: 523 GL 524
           GL
Sbjct: 695 GL 696



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 190/348 (54%), Gaps = 13/348 (3%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G + +A  +FD+MS R+ F   WN+++ GY   GE   A+ +Y +M   GV  D 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIF--TWNAMMGGYVSNGEALGALEMYREMRHLGVSFDS 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           +TFP +LKAC  +  +  G ++H  A+++G     FV+N+LV +YAKC DI  AR +FDR
Sbjct: 59  YTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 255 I-GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRI 310
           +    D++S+NS+++ Y  +G+  EA  +F  M+  G   +    ++ L    ++S +++
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKL 178

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q+H  +L+ G   D+ +AN+L+ +Y + GK+ +A  +F ++  KD+V+WNS++    +
Sbjct: 179 GMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQ 238

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           +    EAL +F  ++   + PD ++ +S++ A   LG +  G+ + +  + K G    + 
Sbjct: 239 NGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAI-KNGFDSNIL 297

Query: 428 HYACMVNLYGRAGLID---EAYSMIVEKMEFEASPVVWGALLYACYLH 472
               ++++Y +   +     A+ ++  K     +    G     CYL 
Sbjct: 298 VGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQ 345



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 215/415 (51%), Gaps = 15/415 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++  + TF  LL+ C  ++ +  G ++H L           + + L+ LYA    I+ A
Sbjct: 53  GVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGA 112

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M  R      WNS+IS Y+  G   +A+ L+ +M + GV  + +TF   L+AC 
Sbjct: 113 RKLFDRMYVRNDVV-SWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACE 171

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               I++G ++H   ++ G   D +V NALV MY + G + +A  +F  +  KD++++NS
Sbjct: 172 DSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNS 231

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           MLTG+I +GL  EA + F  +      PD V+I SI+  +  L     G ++H + ++ G
Sbjct: 232 MLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNG 291

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFE 379
            + ++ + N+LI +Y+K   +      FD M  KD++SW +    ++++    +AL    
Sbjct: 292 FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLR 351

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           Q++ +G+  D     S+L AC  L  +   + +    +      P +++   ++++YG  
Sbjct: 352 QLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNT--IIDVYGEC 409

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLH---GNVCMGETAAQKLFELEPD 491
           G+ID A   I E +E +   V W +++ +CY+H    N  +   ++ K   LEPD
Sbjct: 410 GIIDYAVR-IFESIECK-DVVSWTSMI-SCYVHNGLANKALEVFSSMKETGLEPD 461



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 7/241 (2%)

Query: 66  KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           K  LQAL+ +++ L+     G+ V      S+L  C  L  +    ++H       L  +
Sbjct: 341 KCYLQALE-LLRQLQ---MEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SD 395

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             + + ++ +Y   G+ID A ++F+ +  +   +  W S+IS Y   G    A+ ++  M
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVS--WTSMISCYVHNGLANKALEVFSSM 453

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           +E G+EPD  T   +L A   L  ++ G+++H   +R GF  +G + N LVDMYA+CG +
Sbjct: 454 KETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSV 513

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             A  +F    N++LI + +M++ Y  HG    A ++F  M      PD +   ++L   
Sbjct: 514 EDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573

Query: 306 S 306
           S
Sbjct: 574 S 574


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 241/479 (50%), Gaps = 40/479 (8%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             GIT    T   L + C ++  +  G K+H             +S+ L+ +YA  G + 
Sbjct: 109 HQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLG 168

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A ++FD M +R   +  WN+LI GY++  +Y++ + L+  M    ++ D  T  +++ A
Sbjct: 169 FAQKMFDGMLDRDLVS--WNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILA 226

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY------------------------ 239
           C+ LG     + +           D ++ N L+DMY                        
Sbjct: 227 CSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSW 286

Query: 240 -------AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
                  AK G++  AR +FD +  +D+IS+ SM+TGY       +A  +F+ M+     
Sbjct: 287 NALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 346

Query: 293 PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           PD V ++S+L   A+   L +G  VH ++ R GV+ D+ + NSLI +Y K G +++A  +
Sbjct: 347 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 406

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F  M  KD VSW S+I   + +   + AL  F QM R+GV P H TFV +L ACAH G V
Sbjct: 407 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLV 466

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G   F  M   +G+ P ++HY C+V+L  R+G ID+AY  I +KM      VVW  LL
Sbjct: 467 NKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFI-KKMPIVPDVVVWRILL 525

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            AC LHGNV + E A ++L EL+P +  N+ LL   Y    R DD  ++  ++ D  ++
Sbjct: 526 SACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQ 584



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 198/400 (49%), Gaps = 43/400 (10%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
           +LH  +    L  +  + S ++R Y+     + +AH VF+Q+   T     WN +I G +
Sbjct: 35  ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVV--WNHMIRGLS 92

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           +     +AI +Y +M  +G+  +  T   + KACA +  I  G K+H+ A++ GF    F
Sbjct: 93  QSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLF 152

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V NAL+ MYA CG +  A+ +FD + ++DL+S+N+++ GY  +    E   +F  M    
Sbjct: 153 VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN 212

Query: 291 FDPDPVAISSILANASLL----------------------------------RIGAQVHG 316
              D V +  I+   S L                                  R  A++  
Sbjct: 213 IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQ 272

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE--- 373
            V  R  E ++   N+L++ ++K G L  A  LFD+MP++DV+SW S+I  +S+  +   
Sbjct: 273 GVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSD 332

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  F++M    V PD +T  S+LSACAHLG + VG  +    + ++G+   +     ++
Sbjct: 333 AVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHY-IRRHGVQADIYVGNSLI 391

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++Y + G++++A   +  +M+ +   V W +++    ++G
Sbjct: 392 DMYCKCGMVEKALE-VFHRMK-DKDSVSWTSVISGLAVNG 429


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 239/439 (54%), Gaps = 10/439 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S+   C  L  +E+G ++H +     LR+N      L  +YA FG +  A   F Q+ 
Sbjct: 365 FGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIK 424

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N    +  WN++I+ +A+ G+  +AI  + QM   G+ PD  T+  +L  C     +  G
Sbjct: 425 NPDIVS--WNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQG 482

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTGYIH 272
            ++H   V+ GF  +  V N+L+ MY KC  +  A  VF  I  N +L+S+N++L+  + 
Sbjct: 483 RQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQ 542

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
                E F +++ M  +G  PD + I+++L   A  + L +G QVH + ++ G+  D+ +
Sbjct: 543 KKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSV 602

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
            N LI +Y+K G L  A  +FD     D+VSW+S+I  +++    HEAL  F  M   GV
Sbjct: 603 CNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGV 662

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +T++  LSAC+H+G V+ G RL+  M  ++GI P  EH++C+V+L  RAG + EA 
Sbjct: 663 QPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAE 722

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           + I +K   +A    W  LL AC  H NV + E  A  + +L+P N     +L  I+ +A
Sbjct: 723 TFI-QKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASA 781

Query: 507 GRLDDVERVERMLVDRGLE 525
           G  ++V ++ +++   G++
Sbjct: 782 GNWEEVAKLRKLMKQMGVQ 800



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 224/435 (51%), Gaps = 22/435 (5%)

Query: 46  FSSYPKSSPTP----LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETC 101
           FS+  K  PT      L  Q  + K  L+A D  +++  S  +        T+ SL+  C
Sbjct: 117 FSNLSKELPTNSYIIFLCKQHHY-KEALEAFDFHLKNSNSHFE------PSTYTSLVLAC 169

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
              +++++  K+H  +  +  + +  + + ++ +Y   G + +A +VFD M  +      
Sbjct: 170 ANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM--QLPNVVS 227

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W S+ISGY++ G+  DAI +Y QM   G  PDQ TF  V+KAC   G I +G ++H   +
Sbjct: 228 WTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVI 287

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  FG      NAL+ MY   G I  A  VF RI  KDLIS+ +M+TGYI  G  VEA  
Sbjct: 288 KSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALY 347

Query: 282 IFRGMILNG-FDPDPVAISSIL-ANASLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVY 337
           +FR ++  G + P+     S+  A +SLL +  G QVHG  ++ G+  ++    SL  +Y
Sbjct: 348 LFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMY 407

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
           +K G L  A   F  +   D+VSWN+II A + +   +EA+ +F QM   G+ PD +T++
Sbjct: 408 AKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYI 467

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           SLL  C     +  G ++ S +V K G    +     ++ +Y +   + +A + +   + 
Sbjct: 468 SLLCTCGSPVRLNQGRQIHSYIV-KIGFDKEITVCNSLLTMYTKCSHLHDALN-VFRDIS 525

Query: 455 FEASPVVWGALLYAC 469
             A+ V W A+L AC
Sbjct: 526 RNANLVSWNAILSAC 540



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 3/239 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+T  + T+ SLL TC     +  G ++H  I      K   + + LL +Y     + +A
Sbjct: 458 GLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDA 517

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF  +S R A    WN+++S   +  +  +   LY +M   G +PD  T   +L  CA
Sbjct: 518 LNVFRDIS-RNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCA 576

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  + VG +VH  +++ G   D  V N L+DMYAKCG +  AR VFD   N D++S++S
Sbjct: 577 ELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSS 636

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           ++ GY   GL  EA ++FR M   G  P+ V     L+  S   IG    GW L + +E
Sbjct: 637 LIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACS--HIGLVEEGWRLYKSME 693


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 248/439 (56%), Gaps = 10/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  S+L    +L  + +G ++H     N L  N  I + L+ +Y+    +  A  VFD+M
Sbjct: 215 SLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKM 274

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N+   +  W ++I+ YA+   + +A+ L  +++ +G++ D       L AC+GL  +  
Sbjct: 275 INKDLIS--WTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSH 332

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH   ++ G   D  + N ++D+YA CG+I  A  +F+ I  KD++S+ SM++ Y+H
Sbjct: 333 AKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVH 391

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
           +GL  EA  +F  M     +PD + + SIL+ A+ L     G ++HG++ R+G   +   
Sbjct: 392 NGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGST 451

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            NSL+ +Y+  G L+ A  +F     K +V W ++I+A   H +   A+  F  ME   +
Sbjct: 452 VNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKL 511

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PDH+TF++LL AC+H G +  G+RL   M  KY + P  EHYAC+V+L GRA  ++EAY
Sbjct: 512 IPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAY 571

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
              V+ M+ E +  VW A L AC +H N  +GE AAQKL +L+PD+  ++ L+  ++  +
Sbjct: 572 H-FVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAAS 630

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR  DVE V   +   GL+
Sbjct: 631 GRWKDVEEVRMRMKGGGLK 649



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 219/416 (52%), Gaps = 15/416 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+   + TF  +L+ C  ++ +  G ++H LI          +++ L+ +YA    I  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M+ R      WNS+IS Y+  G+  +A+ L+ +M++ GV  + +T    L+AC 
Sbjct: 65  RKLFDRMNERNDVV-SWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACE 123

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
                ++G ++H   ++     D +V NALV M+ + G +  A  +FD +  KD I++NS
Sbjct: 124 DSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNS 183

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           M+ G+  +GL  EA   F G+      PD V++ SILA +  L     G ++H + ++  
Sbjct: 184 MIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFE 379
           ++ +L I N+LI +YSK   +  A  +FD M  KD++SW ++I A+++++   EAL    
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLR 303

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +++  G+  D +   S L AC+ L  +   + +    +++ G+S  +     ++++Y   
Sbjct: 304 KVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR-GLSDLMMQNM-IIDVYADC 361

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLH---GNVCMGETAAQKLFELEPDN 492
           G I+ A  M  E ++ +   V W +++ +CY+H    N  +G     K   +EPD+
Sbjct: 362 GNINYATRMF-ESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPDS 414



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 11/225 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLH----RLIPTNLLRKNKGISSKLLRLYATFGL 141
           G+ V T    S L  C  L+ + H  ++H    +   ++L+ +N      ++ +YA  G 
Sbjct: 309 GMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNM-----IIDVYADCGN 363

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           I+ A ++F+ +  +   +  W S+IS Y   G   +A+ +++ M+E  VEPD  T   +L
Sbjct: 364 INYATRMFESIKCKDVVS--WTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSIL 421

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A A L  +  G+++H    R GF  +G  +N+LVDMYA CG +  A  VF    +K L+
Sbjct: 422 SAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLV 481

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            + +M+  Y  HG    A ++F  M      PD +   ++L   S
Sbjct: 482 LWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACS 526


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 240/447 (53%), Gaps = 10/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G+   + T+ SLL T     A+E   ++H+      L  +  + S  + +Y   G ID
Sbjct: 517 QEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSID 576

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  +FD++S R      WN++I G A+     +A++L+ QM+ EG  PD  TF  +L A
Sbjct: 577 DARLLFDKLSVR--HVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
                 +   ++VH  A   G   D  V NALV  Y+KCG++  A+ VFD +  +++ ++
Sbjct: 635 NVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTW 693

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
             M+ G   HG   +AF  F  M+  G  PD     SIL   A+   L    +VH   + 
Sbjct: 694 TMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVS 753

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
            G+  DL + N+L+ +Y+K G +D A  +FD M ++DV SW  +I     H +  EAL +
Sbjct: 754 AGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDF 813

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M+ +G  P+  ++V++L+AC+H G V  G R F  M + YGI P +EHY CMV+L G
Sbjct: 814 FVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLG 873

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAGL++EA  + +  M  E     WGALL AC  +GN+ M E AA++  +L+P +   + 
Sbjct: 874 RAGLLEEA-ELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYV 932

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  IY   G+ +    V  M+  +G+
Sbjct: 933 LLSNIYAATGKWEQKLLVRSMMQRKGI 959



 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 246/459 (53%), Gaps = 22/459 (4%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L+  VQ GI + + ++ ++L+ C + + +    ++H  I  + + +N  +++KLLR+Y  
Sbjct: 106 LKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIR 165

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +  A QVFD++  +  +   W ++I GYAE G  EDA+ +Y +M +E  +P++ T+ 
Sbjct: 166 CGRLQCARQVFDKLLKKNIYI--WTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYL 223

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +LKAC     ++ G+K+H   ++ GF  D  V  ALV+MY KCG I  A+ +FD++  +
Sbjct: 224 SILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVER 283

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           ++IS+  M+ G  H+G   EAF +F  M   GF P+     SIL   A+A  L    +VH
Sbjct: 284 NVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVH 343

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
              +  G+  DL + N+L+ +Y+K G +D A  +FD M ++D+ SW  +I     H +  
Sbjct: 344 SHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQ 403

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE--RLFSVMVEKYGISPRVEHYA 430
           EA   F QM+R+G LP+  T++S+L+A A + S    E  ++     E+ G    +    
Sbjct: 404 EAFSLFLQMQRNGCLPNLTTYLSILNASA-IASTSALEWVKVVHKHAEEAGFISDLRIGN 462

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE- 489
            ++++Y + G ID+A  ++ + M  +   + W A++    L  N C G  A     +++ 
Sbjct: 463 ALIHMYAKCGSIDDA-RLVFDGM-CDRDVISWNAMMGG--LAQNGC-GHEAFTVFLQMQQ 517

Query: 490 ----PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
               PD+     LL   +G+   L+ V  V +  V+ GL
Sbjct: 518 EGLVPDSTTYLSLL-NTHGSTDALEWVNEVHKHAVETGL 555



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 209/428 (48%), Gaps = 47/428 (10%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           I + L+ +YA  G ID+A  VFD M +R   +  WN+++ G A+ G   +A  ++ QM++
Sbjct: 460 IGNALIHMYAKCGSIDDARLVFDGMCDRDVIS--WNAMMGGLAQNGCGHEAFTVFLQMQQ 517

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG+ PD  T+  +L        +    +VH  AV  G   D  V +A + MY +CG I  
Sbjct: 518 EGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDD 577

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---N 304
           AR +FD++  + + ++N+M+ G        EA  +F  M   GF PD     +IL+   +
Sbjct: 578 ARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVD 637

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L    +VH      G+  DL + N+L+  YSK G +  A  +FD M +++V +W  +
Sbjct: 638 EEALEWVKEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMM 696

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H   H+A  +F QM R+G++PD  T+VS+LSACA  G+++  + + +  V   G
Sbjct: 697 IGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSA-G 755

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSM---IVEKMEFEASPVVWG--------------- 463
           +   +     +V++Y + G ID+A S+   +VE+  F  + ++ G               
Sbjct: 756 LVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFV 815

Query: 464 ---------------ALLYACYLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGN 505
                          A+L AC   G V  G     +  + + +EP  EH +  ++ + G 
Sbjct: 816 KMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEH-YTCMVDLLGR 874

Query: 506 AGRLDDVE 513
           AG L++ E
Sbjct: 875 AGLLEEAE 882



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 160/293 (54%), Gaps = 11/293 (3%)

Query: 163 NSLISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           N+ + G AE    +   +DA+A+     ++G+  D F++  +L+ C     I + ++VH+
Sbjct: 83  NASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHV 142

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             ++ G   + +V N L+ +Y +CG +  AR VFD++  K++  + +M+ GY  +G   +
Sbjct: 143 CIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAED 202

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A  ++  M      P+ +   SIL        L+ G ++H  +++ G + D+ +  +L+ 
Sbjct: 203 AMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVN 262

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLT 392
           +Y K G ++ A  +FD M +++V+SW  +I     + +  EA   F QM+R+G +P+  T
Sbjct: 263 MYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYT 322

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +VS+L+A A  G+++  + + S  V   G++  +     +V++Y ++G ID+A
Sbjct: 323 YVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDA 374



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ GI     T+ S+L  C    A+E   ++H    +  L  +  + + L+ +YA  G I
Sbjct: 717 LREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSI 776

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D+A  VFD M  R  F+  W  +I G A+ G   +A+  + +M+ EG +P+ +++  VL 
Sbjct: 777 DDARSVFDDMVERDVFS--WTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLT 834

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCG 243
           AC+  GL+  G +  L   +  +G +  +     +VD+  + G
Sbjct: 835 ACSHAGLVDEGRRQFLSMTQ-DYGIEPTMEHYTCMVDLLGRAG 876


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/426 (34%), Positives = 241/426 (56%), Gaps = 19/426 (4%)

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATF--GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           H L+    L  N   SSKL+   A    G ++ A ++F QM N   F    N++I GYA 
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFI--CNTMIRGYAR 88

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
                +A++LY+ M E GV  D +T+P VL ACA LG +++G + H + ++ GFG D FV
Sbjct: 89  SQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFV 148

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNG 290
           +NAL+  Y  CG    A  VFD    +D++++N M+  +++ GL  +AFD+   M  L+ 
Sbjct: 149 INALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDN 208

Query: 291 FDPDPVAISSIL-ANASL--LRIGAQVHGW---VLRRGVEWDLCIANSLIVVYSKDGKLD 344
             PD V + S++ A A L  L  G  +H +   + +  +  DL +  +L+ +Y+K G +D
Sbjct: 209 LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSID 268

Query: 345 QACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
            A  +F  M  ++V +WN++I     H H +D  A+  F+QME D ++PD +TF++LL A
Sbjct: 269 LALQVFRRMRVRNVFTWNALIGGLAMHGHGED--AISLFDQMEHDKLMPDDVTFIALLCA 326

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+H G V  G  +F  M  K+ I PR+EHY C+V+L  RA  +D+A + I E M  +A+ 
Sbjct: 327 CSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFI-ENMPIKANS 385

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           V+W  LL AC   G+  + E   +++ ELEPD+   + +L  +Y    + D   ++ + +
Sbjct: 386 VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQM 445

Query: 520 VDRGLE 525
            ++G+E
Sbjct: 446 KNKGIE 451



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 5/124 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLH---RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           T  SL+  C QL  +E G  LH   + +    +  +  + + L+ +YA  G ID A QVF
Sbjct: 215 TMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVF 274

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
            +M  R  F   WN+LI G A  G  EDAI+L+ QME + + PD  TF  +L AC+  GL
Sbjct: 275 RRMRVRNVFT--WNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGL 332

Query: 210 IRVG 213
           +  G
Sbjct: 333 VDEG 336


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 210/377 (55%), Gaps = 38/377 (10%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M  +GV+P+QFT   V+KACA +  +  G++ H   ++ GF  D  V  ALV MYA+CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 245 IVKARTVFDRIGNK-------------------------------DLISYNSMLTGYIHH 273
           +  A  VFD++  +                               D++S+ +++ GY  +
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   E+ ++F  M   G   D   + S+L   A+ + L +G Q H +V++ G   D+ + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
           ++L+ +Y+K G ++ AC +FD MPQ++ VSWNSII     H + ++A++ FEQM + G+ 
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ ++FV +LSAC+H G V  G   F++M + YGI P V HY CM++L GRAG +DEA +
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
            I   M  E    VWGALL AC +HGN  + +  A+ L  +E      + LL  IY  AG
Sbjct: 301 FI-NGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359

Query: 508 RLDDVERVERMLVDRGL 524
           + DD  +V +++ DRG+
Sbjct: 360 QWDDAAKVRKLMKDRGV 376



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 177/400 (44%), Gaps = 74/400 (18%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     T +++++ C  + ++E G + H  I       +  + + L+ +YA  G +
Sbjct: 2   VGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSL 61

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
           ++A  VFD+MS R+   +                              W ++I+GYA+ G
Sbjct: 62  EDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNG 121

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
             ++++ ++ QM + G++ D+F    VL ACA L  + +G + H   V+ GF  D  V +
Sbjct: 122 YGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGS 181

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           ALVDMYAK G +  A  VFD++  ++ +S+NS++TG   HG   +A  +F  M+  G  P
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKP 241

Query: 294 DPVAISSILANASLLRIGAQVHGW----VLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           + ++   +L+  S   +  +  G+        G+  D+     +I +  + G LD+A   
Sbjct: 242 NEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENF 301

Query: 350 FDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV--- 406
            + MP                               V PD   + +LL AC   G+    
Sbjct: 302 INGMP-------------------------------VEPDVSVWGALLGACRIHGNTELA 330

Query: 407 -KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            ++ E L  + V+  GI      Y  + N+Y  AG  D+A
Sbjct: 331 KRIAEHLLGMEVQIAGI------YVLLSNIYAAAGQWDDA 364


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 245/434 (56%), Gaps = 14/434 (3%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +S+L +C  L A+E G ++H       L  +  +++ L+ +YA    + EA +VFD  + 
Sbjct: 354 SSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAA 413

Query: 155 RTAFAFPWNSLISGYAELG---EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
                F  N++I GY+ LG   E  DA+ ++  M    + P   TF  +L+A A L  + 
Sbjct: 414 DDVVLF--NAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           + +++H    +FG   D F  +AL+ +Y+ C  +  +R VFD +  KDL+ +NSM +GY+
Sbjct: 472 LSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYV 531

Query: 272 HHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
                 EA ++F  + L+   PD    V + +   N + L++G + H  +L+RG+E +  
Sbjct: 532 QQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPY 591

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           I N+L+ +Y+K G  + A   FD    +DVV WNS+I +   H +  +AL   E+M  +G
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEG 651

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+++TFV +LSAC+H G V+ G + F +M+ ++GI P  EHY CMV+L GRAG ++EA
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAGRLNEA 710

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I EKM  + + +VW +LL  C   GNV + E AA+     +P +  +F LL  IY +
Sbjct: 711 RELI-EKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYAS 769

Query: 506 AGRLDDVERV-ERM 518
            G   D ++V ERM
Sbjct: 770 KGMWTDAKKVRERM 783



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 235/470 (50%), Gaps = 49/470 (10%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            +++L  C  L  +E G ++H  I      K+  + + L+  Y   G +  AH++FD M 
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMP 311

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N+   +  W +L+SGY +   +++A+ L+  M + G++PD F    +L +CA L  +  G
Sbjct: 312 NKNIIS--WTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFG 369

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +VH   ++   G D +V N+L+DMYAKC  + +AR VFD     D++ +N+M+ GY   
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRL 429

Query: 274 GL---LVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRIG--AQVHGWVLRRGVEWDL 327
           G    L +A +IF  M      P  +   S+L A+ASL  +G   Q+HG + + G+  D+
Sbjct: 430 GTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDI 489

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERD 384
              ++LI VYS    L  +  +FD M  KD+V WNS+   +   S++ EAL  F +++  
Sbjct: 490 FAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLS 549

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
              PD  TFV +++A  +L S+++G+  F   + K G+         ++++Y + G  ++
Sbjct: 550 RDRPDEFTFVDMVTAAGNLASLQLGQE-FHCQLLKRGLECNPYITNALLDMYAKCGSPED 608

Query: 445 AYS------------------------------MIVEKME---FEASPVVWGALLYACYL 471
           A+                                ++EKM     E + + +  +L AC  
Sbjct: 609 AHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSH 668

Query: 472 HGNVCMGETAAQKL--FELEPDNEHNFELLIKIYGNAGRLDDV-ERVERM 518
            G V  G    + +  F +EP+ EH +  ++ + G AGRL++  E +E+M
Sbjct: 669 AGLVEDGLKQFELMLRFGIEPETEH-YVCMVSLLGRAGRLNEARELIEKM 717



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 216/412 (52%), Gaps = 23/412 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+  Y   G ID A  VFD +  ++     W ++ISG  ++G    ++ L++Q+ E
Sbjct: 185 VGTLLIDFYLKEGNIDYARLVFDALPEKSTVT--WTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             V PD +    VL AC+ L  +  G+++H   +R+G   D  ++N L+D Y KCG +  
Sbjct: 243 GNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRA 302

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-AS 306
           A  +FD + NK++IS+ ++L+GY  + L  EA ++F  M   G  PD  A SSIL + AS
Sbjct: 303 AHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCAS 362

Query: 307 L--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L  L  G QVH + ++  +  D  + NSLI +Y+K   L +A  +FD     DVV +N++
Sbjct: 363 LHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAM 422

Query: 365 IHAHSK------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           I  +S+       H+AL  F  M    + P  LTFVSLL A A L S+ + +++  +M  
Sbjct: 423 IEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF- 481

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           K+G++  +   + ++ +Y     + ++  ++ ++M+ +   V+W + +++ Y+  +    
Sbjct: 482 KFGLNLDIFAGSALIAVYSNCYCLKDS-RLVFDEMKVK-DLVIWNS-MFSGYVQQS--EN 536

Query: 479 ETAAQKLFELE-----PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           E A     EL+     PD E  F  ++   GN   L   +     L+ RGLE
Sbjct: 537 EEALNLFLELQLSRDRPD-EFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLE 587



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 185/366 (50%), Gaps = 22/366 (6%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNL----LRKNKGISSKLLRLYATFGLIDEAHQVF 149
           FA LL    QL+A++  +  H ++   +    L  +  +S+ L+ LY+  G +  A +VF
Sbjct: 47  FARLL----QLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVF 102

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLG 208
           ++M  R      W++++S     G YE+++ ++          P+++     ++AC+GL 
Sbjct: 103 EKMPERNLVT--WSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLD 160

Query: 209 LIRVGEKVHLDA--VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
                    L +  V+  F  D +V   L+D Y K G+I  AR VFD +  K  +++ +M
Sbjct: 161 GSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTM 220

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGV 323
           ++G +  G    +  +F  ++     PD   +S++L+  S+L     G Q+H  +LR G 
Sbjct: 221 ISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGH 280

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQ 380
           E D  + N LI  Y K G++  A  LFD MP K+++SW +++  + ++    EA+  F  
Sbjct: 281 EKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTS 340

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRA 439
           M + G+ PD     S+L++CA L +++ G ++ +  ++   G    V +   ++++Y + 
Sbjct: 341 MPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTN--SLIDMYAKC 398

Query: 440 GLIDEA 445
             + EA
Sbjct: 399 DCLTEA 404



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 175/368 (47%), Gaps = 39/368 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL     L ++    ++H L+    L  +    S L+ +Y+    + ++  VFD+M
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEM 515

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WNS+ SGY +  E E+A+ L+ +++     PD+FTF  ++ A   L  +++
Sbjct: 516 KVKDLVI--WNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQL 573

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++ H   ++ G   + ++ NAL+DMYAKCG    A   FD   ++D++ +NS+++ Y +
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HG   +A  +   M+  G +P+ +    +L   ++A L+  G +    +LR G+E +   
Sbjct: 634 HGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEH 693

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389
              ++ +  + G+L++A  L + MP K                               P 
Sbjct: 694 YVCMVSLLGRAGRLNEARELIEKMPTK-------------------------------PA 722

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            + + SLLS CA  G+V++ E  ++  +           +  + N+Y   G+  +A   +
Sbjct: 723 AIVWRSLLSGCAKAGNVELAE--YAAEMAILSDPKDSGSFTLLSNIYASKGMWTDA-KKV 779

Query: 450 VEKMEFEA 457
            E+M+FE 
Sbjct: 780 RERMKFEG 787



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 132/264 (50%), Gaps = 20/264 (7%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH   +  G   D ++ N L+++Y++ G +V AR VF+++  ++L+++++M++   HHG 
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 276 LVEAFDIFRGMILNGFD-PDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDLCI 329
             E+  +F        + P+   +SS +   S L         Q+  ++++   + D+ +
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYV 185

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
              LI  Y K+G +D A  +FD +P+K  V+W ++I    K    + +L  F Q+    V
Sbjct: 186 GTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNV 245

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PD     ++LSAC+ L  ++ G+++ + ++ +YG          +++ Y + G +  A+
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHIL-RYGHEKDASLMNVLIDSYVKCGRVRAAH 304

Query: 447 SMIVEKMEFEASP----VVWGALL 466
            +      F+  P    + W  LL
Sbjct: 305 KL------FDGMPNKNIISWTTLL 322



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +Q LE  +  GI     TF  +L  C     VE G+K   L+    +         ++ L
Sbjct: 641 LQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSL 700

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA-----ELGEYEDAIALYFQMEEEGV 190
               G ++EA ++ ++M  + A A  W SL+SG A     EL EY   +A+    ++ G 
Sbjct: 701 LGRAGRLNEARELIEKMPTKPA-AIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSG- 758

Query: 191 EPDQFTFPRVLKACAGL 207
               FT    + A  G+
Sbjct: 759 ---SFTLLSNIYASKGM 772


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/438 (33%), Positives = 241/438 (55%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SLL  C +L+    G +LH  +  + L  +  +   L+ +YA    ++ + ++F+ M
Sbjct: 250 TLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +    +  W +LISGY +  + ++AI L+  M    V P+ FTF  VLKACA L    +
Sbjct: 310 LHHNVMS--WTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGI 367

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++ G      V N+L++MYA+ G +  AR  F+ +  K+LISYN+       
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK 427

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
                E+F+    +   G    P   + +L+ A+ +     G Q+H  +++ G   +LCI
Sbjct: 428 ALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCI 485

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+LI +YSK G  + A  +F+ M  ++V++W SII   +K     +AL  F +M   GV
Sbjct: 486 NNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGV 545

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +T++++LSAC+H+G +    + F+ M   + ISPR+EHYACMV+L GR+GL+ EA 
Sbjct: 546 KPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAI 605

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I   M F+A  +VW   L +C +H N  +GE AA+K+ E EP +   + LL  +Y + 
Sbjct: 606 EFI-NSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASE 664

Query: 507 GRLDDVERVERMLVDRGL 524
           GR DDV  + + +  + L
Sbjct: 665 GRWDDVAALRKSMKQKKL 682



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 218/451 (48%), Gaps = 43/451 (9%)

Query: 69  LQALDSIIQDLESSVQN-GITVQTETFAS--LLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
           LQA D   + L  ++    +T  +    S  LL+ C +   +E G  LH  +  + L  +
Sbjct: 14  LQAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLD 73

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             + + L+ LY+  G  + A  +F  M +       W+++IS +A       A+  +  M
Sbjct: 74  SVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHM 133

Query: 186 ---EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDMYA 240
                  + P+++ F  +L++C+       G  +    ++ G+ FD  V    AL+DM+ 
Sbjct: 134 LQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGY-FDSHVCVGCALIDMFT 192

Query: 241 KCG-DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           K G DI  AR VFD++ +K+L+++  M+T Y   GLL +A D+F  ++++ + PD   ++
Sbjct: 193 KGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLT 252

Query: 300 SILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S+L+         +G Q+H WV+R G+  D+ +  +L+ +Y+K   ++ +  +F+ M   
Sbjct: 253 SLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHH 312

Query: 357 DVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           +V+SW ++I  +    ++ EA+  F  M    V P+  TF S+L ACA L    +G++L 
Sbjct: 313 NVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLH 372

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLID---EAYSMIVEK------------------ 452
              + K G+S        ++N+Y R+G ++   +A++++ EK                  
Sbjct: 373 GQTI-KLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDS 431

Query: 453 -----MEFEASPVVWGALLYACYLHGNVCMG 478
                 E E + V      YAC L G  C+G
Sbjct: 432 DESFNHEVEHTGVGASPFTYACLLSGAACIG 462



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 211/410 (51%), Gaps = 12/410 (2%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGI 128
           +AL + +  L+ S +N I      F +LL +C        G+ +   L+ T     +  +
Sbjct: 125 RALLTFLHMLQCS-RNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCV 183

Query: 129 SSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
              L+ ++   GL I  A  VFD+M ++      W  +I+ Y++LG  +DA+ L+ ++  
Sbjct: 184 GCALIDMFTKGGLDIQSARMVFDKMQHKNLVT--WTLMITRYSQLGLLDDAVDLFCRLLV 241

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
               PD+FT   +L AC  L    +G+++H   +R G   D FV   LVDMYAK   +  
Sbjct: 242 SEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVEN 301

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANAS 306
           +R +F+ + + +++S+ ++++GY+      EA  +F  M+     P+    SS+L A AS
Sbjct: 302 SRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACAS 361

Query: 307 L--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L    IG Q+HG  ++ G+    C+ NSLI +Y++ G ++ A   F+ + +K+++S+N+ 
Sbjct: 362 LPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTA 421

Query: 365 IHAHSKDHEALIYFE-QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
             A++K  ++   F  ++E  GV     T+  LLS  A +G++  GE++ +++V K G  
Sbjct: 422 ADANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIV-KSGFG 480

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             +     ++++Y + G   EA   +   M +  + + W +++     HG
Sbjct: 481 TNLCINNALISMYSKCG-NKEAALQVFNDMGYR-NVITWTSIISGFAKHG 528


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 244/446 (54%), Gaps = 8/446 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G    + T  + + +C +L  +  G+++H  +  +    +  ISS L+ +Y   G ++ A
Sbjct: 202 GFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMA 261

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F+QM  +T  A  WNS+ISGY   G+    I L+ +M  EGV+P   T   ++  C+
Sbjct: 262 IEIFEQMPKKTVVA--WNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +  G+ VH   +R     D FV ++L+D+Y KCG +  A  +F  I    ++S+N 
Sbjct: 320 RSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNV 379

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M++GY+  G L EA  +F  M  +  + D +  +S+L   S    L  G ++H  ++ + 
Sbjct: 380 MISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKK 439

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           ++ +  +  +L+ +Y+K G +D+A  +F  +P++D+VSW S+I A   H   + AL  F 
Sbjct: 440 LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFA 499

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M +  V PD + F+++LSAC H G V  G   F+ M+  YGI PRVEHY+C+++L GRA
Sbjct: 500 EMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRA 559

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EAY ++ +  E      +   L  AC LH N+ +G   A+ L + +PD+   + LL
Sbjct: 560 GRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILL 619

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y +A + D+V  V   + + GL+
Sbjct: 620 SNMYASAHKWDEVRVVRSKMKELGLK 645



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 230/435 (52%), Gaps = 30/435 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ S+ + C  L     G  +H  +    L  +  + S L+ +Y      ++A  +F++M
Sbjct: 108 TYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEM 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WN++IS Y + G ++DA+  +  M   G EP+  T    + +CA L  +  
Sbjct: 168 PEKDVAC--WNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNR 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H + +  GF  D F+ +ALVDMY KCG +  A  +F+++  K ++++NSM++GY  
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGL 285

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G ++    +F+ M   G  P    +SS++   + ++ L  G  VHG+ +R  ++ D+ +
Sbjct: 286 KGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFV 345

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGV 386
            +SL+ +Y K GK++ A  +F  +P+  VVSWN +I    A  K  EAL  F +M +  V
Sbjct: 346 NSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYV 405

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             D +TF S+L+AC+ L +++ G+ + ++++EK   +  V   A ++++Y + G +DEA+
Sbjct: 406 ESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGA-LLDMYAKCGAVDEAF 464

Query: 447 SMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLF------ELEPDNEHNF 496
           S+      F+  P    V W +++ A   HG+       A +LF       ++PD    F
Sbjct: 465 SV------FKCLPKRDLVSWTSMITAYGSHGHA----YGALELFAEMLQSNVKPDRV-AF 513

Query: 497 ELLIKIYGNAGRLDD 511
             ++   G+AG +D+
Sbjct: 514 LAILSACGHAGLVDE 528



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 227/481 (47%), Gaps = 51/481 (10%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           + T     LL  C   K+++ G  +H+ + T  L+ +  +   L+  Y +  L D A  V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGL 207
           FD M N    +  WN L++GY +   Y +A+ L+ ++     ++PD +T+P V KAC GL
Sbjct: 61  FDNMENPCEISL-WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGL 119

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
               +G+ +H   ++ G   D  V ++LV MY KC    KA  +F+ +  KD+  +N+++
Sbjct: 120 HRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVI 179

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRI--GAQVHGWVLRRGVE 324
           + Y   G   +A + F  M   GF+P+ V I++ +++ A LL +  G ++H  ++  G  
Sbjct: 180 SCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM 381
            D  I+++L+ +Y K G L+ A  +F+ MP+K VV+WNS+I  +    +    +  F++M
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM 299

Query: 382 ERDGVLPDHLTFVSLLSACAH-----------------------------------LGSV 406
             +GV P   T  SL+  C+                                     G V
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKV 359

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE--KMEFEASPVVWGA 464
           ++ E++F ++ +   +S  V     M++ Y   G + EA  +  E  K   E+  + + +
Sbjct: 360 ELAEKIFKLIPKSKVVSWNV-----MISGYVAEGKLFEALGLFSEMRKSYVESDAITFTS 414

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           +L AC     +  G+     + E + D NE     L+ +Y   G +D+   V + L  R 
Sbjct: 415 VLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRD 474

Query: 524 L 524
           L
Sbjct: 475 L 475


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/479 (31%), Positives = 259/479 (54%), Gaps = 49/479 (10%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           +T  +    S+   C    ++ H     R +  ++  K++   + ++  Y   G  D   
Sbjct: 183 VTSVSNALVSVYSRCASSPSLLHSA---RKVFDDIPEKDERSWTTMMTGYVKNGCFDLGK 239

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           ++   M         +N++ISGY   G Y++A+ +  +M   G+E D+FT+P V++ACA 
Sbjct: 240 ELLKGMDENMKLV-AYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACAN 298

Query: 207 LGLIRVGEKVHLDAVR---FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
             L+++G++VH   +R   F F FD    N+LV +Y KCG   +AR +F+++  KDL+S+
Sbjct: 299 ARLLQLGKQVHAYVLRREDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSW 354

Query: 264 NSMLTGYIHHGLLVEAFDIFRGM----ILN---------------------------GFD 292
           N++L+GY+  G + EA  IF+ M    IL+                           GF+
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 293 PDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P   A S  + + ++L     G Q H  +++ G +  L   N+LI +Y+K G +++A  +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQV 474

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F  MP  D VSWN++I A   H    EA+  +E+M + G+ PD +TF+++L+AC+H G V
Sbjct: 475 FRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLV 534

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G + F+ M   Y I P  +HYA +++L  R+G   EA S I+E + F+ +  +W ALL
Sbjct: 535 DQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAES-IIESLPFKPTAEIWEALL 593

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             C +HGN+ +G  AA KLF L P+++  + LL  +Y   G+ ++V RV +++ DRG++
Sbjct: 594 SGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVK 652



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 194/420 (46%), Gaps = 92/420 (21%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G I  A  VF++          +N++I+G++   +   AI L+ +M+ EG +PD F
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 196 TFPRVLKACAGLGLIRVGEK----VHLDAVRFGFGFDGFVLNALVDMYAKCGD----IVK 247
           T+  VL   AGL L+   EK     H  A++ G G+   V NALV +Y++C      +  
Sbjct: 150 TYASVL---AGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHS 206

Query: 248 ARTVFDRIGNKD--------------------------------LISYNSMLTGYIHHGL 275
           AR VFD I  KD                                L++YN+M++GY++ GL
Sbjct: 207 ARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGL 266

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
             EA ++ R M+ +G + D     S++   ANA LL++G QVH +VLRR  ++     NS
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNS 325

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-SKDH------------------- 372
           L+ +Y K GK ++A  +F+ MP KD+VSWN+++  + S  H                   
Sbjct: 326 LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 373 --------------EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
                         E L  F  M+R+G  P    F   + +CA LG+   G++  + +V 
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLV- 444

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGN 474
           K G    +     ++ +Y + G+++EA  +      F   P    V W AL+ A   HG+
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEAQQV------FRTMPCLDSVSWNALIAALGQHGH 498



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 158/373 (42%), Gaps = 85/373 (22%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK---------------------------- 241
           +++   VH + + FGF     +LN L+D+Y K                            
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 242 ---CGDIVKARTVFDR--IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
               GDI  AR+VF+   +  +D + YN+M+TG+ H+     A ++F  M   GF PD  
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 297 AISSILANASLL----RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK----LDQACW 348
             +S+LA  +L+    +   Q H   L+ G  +   ++N+L+ VYS+       L  A  
Sbjct: 150 TYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARK 209

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD-----------------------------------HE 373
           +FD +P+KD  SW +++  + K+                                    E
Sbjct: 210 VFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQE 269

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL    +M   G+  D  T+ S++ ACA+   +++G+++ + ++ +   S   ++   +V
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN--SLV 327

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
            LY + G  +EA + I EKM  +   V W AL     L G V  G     KL   E   +
Sbjct: 328 TLYYKCGKFNEARA-IFEKMPAK-DLVSWNAL-----LSGYVSSGHIGEAKLIFKEMKEK 380

Query: 494 HNFELLIKIYGNA 506
           +    +I I G A
Sbjct: 381 NILSWMIMISGLA 393


>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
 gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 225/396 (56%), Gaps = 10/396 (2%)

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  G ++ A  VF+++ +  AF F  N++I G+ +  +   A   Y +M+E G+  D FT
Sbjct: 33  AEHGDMNYAVSVFEKIGDPDAFIF--NTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFT 90

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           F  +LK C  LGL+ +G  +H   ++ G     FV N LV MY    DI  +R +F+ I 
Sbjct: 91  FSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIP 150

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
           N +L+++N ++  ++  G   EA ++F  M+  G +PD      IL+  S    L  G  
Sbjct: 151 NPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRW 210

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSK 370
           VH  +   G      + NSL+ +Y+K G L +A  +F+ M +K+ V+WN++I    +H  
Sbjct: 211 VHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGY 270

Query: 371 DHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
            +EAL  F  M E+    PD +TF+ +LSAC+H G V  G R F +M ++Y I P ++HY
Sbjct: 271 ANEALALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPTIKHY 330

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            CMV++ GRAG ++EAY +I   M  + + +VW  LL AC LHGNV +G+   ++L ELE
Sbjct: 331 GCMVDILGRAGFVEEAYRLI-SNMPMQCNAIVWRTLLAACRLHGNVELGKQVRKQLLELE 389

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           PD+  ++ LL   Y +AGR ++  RV + +  RG++
Sbjct: 390 PDHSSDYVLLANTYASAGRWNEAMRVRKTMHKRGVQ 425



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 175/371 (47%), Gaps = 48/371 (12%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+   + TF+ LL+ C QL  V  G  +H       L  +  + + L+ +Y TF  I+
Sbjct: 81  ERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIE 140

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + Q+F+++ N    A  WN +I  +   G++ +A+ ++ +M + G+EPD+ TF  +L A
Sbjct: 141 ASRQLFEEIPNPELVA--WNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSA 198

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ LG +  G  VH      G G    V N+L+DMYAKCG + +A  +F+ +  K+ +++
Sbjct: 199 CSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTW 258

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILANASLLRIGAQVHGW----V 318
           N+M+ G   HG   EA  +F  M+    + PD +    +L+  S    G    GW    +
Sbjct: 259 NTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACS--HGGMVDKGWRFFDI 316

Query: 319 LRRGVEWDLCIAN--SLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEAL 375
           +++       I +   ++ +  + G +++A  L  +MP Q + + W              
Sbjct: 317 MKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLISNMPMQCNAIVWR------------- 363

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVN 434
                              +LL+AC   G+V++G+++   ++E   + P     Y  + N
Sbjct: 364 -------------------TLLAACRLHGNVELGKQVRKQLLE---LEPDHSSDYVLLAN 401

Query: 435 LYGRAGLIDEA 445
            Y  AG  +EA
Sbjct: 402 TYASAGRWNEA 412


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 241/447 (53%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q+ +     T A+++  C  L  +  G  +H  +    L  N  IS+ LL +Y   G ++
Sbjct: 226 QDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELE 285

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VFD++S        W ++I GY + G   DA+ L+   +   + P+  T   VL A
Sbjct: 286 DAQCVFDELSYIDLVL--WTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSA 343

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A L  + +G  +H  AV+ G      V+NALVDMYAKC  + +A  +F  I NKD++++
Sbjct: 344 SAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAW 403

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           NSML+GY  + +  +A  +F+ M L G  PD +++   L+ +  L    IG   HG+ ++
Sbjct: 404 NSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVK 463

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIY 377
                ++ ++ +L+ +Y+K G L  A  +FD M  ++ V+W ++I  +    +   ++  
Sbjct: 464 HAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDL 523

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M +DGV P+ + F S+LS C+H G V   +R F  M + + I+P ++HYACMV++  
Sbjct: 524 FGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLA 583

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG ++EA   I + M  +A   VWGA L+ C LH  +  GE A +++  L P+    + 
Sbjct: 584 RAGNLEEALEFI-DNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYV 642

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  +Y + G  +  + + R + ++GL
Sbjct: 643 LISNLYTSNGMWEKSQAIRRWMQEKGL 669



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 202/383 (52%), Gaps = 12/383 (3%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           L+ C +     +G +LH      +   +  + + L+ +YA  G ++ A +VF+++  R  
Sbjct: 140 LKACIRSADYGYGTRLH-CDAVKVGGADGFVMNSLVDMYAKAGDLECARKVFERIPGRNV 198

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            +  W S++SG  + G   D + L+ +M ++ V P ++T   V+ AC+ L  +  G  +H
Sbjct: 199 VS--WTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMH 256

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
              ++ G   + F+  AL+DMY KCG++  A+ VFD +   DL+ + +M+ GY  +G  +
Sbjct: 257 GSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPL 316

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLI 334
           +A  +F         P+ V I+++L+ ++ LR   +G  +HG  ++ G+     + N+L+
Sbjct: 317 DALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALV 376

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHL 391
            +Y+K   + +A  +F  +  KDVV+WNS++  ++++   ++AL+ F+QM   G  PD +
Sbjct: 377 DMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAI 436

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           + V  LSA   LG + +G+      V K+     +     ++NLY + G +  A   + +
Sbjct: 437 SVVHALSASVCLGDLLIGKSFHGYAV-KHAFLSNIYVSTALLNLYNKCGDLPSARR-VFD 494

Query: 452 KMEFEASPVVWGALLYACYLHGN 474
           +M  + + V W A++    + G+
Sbjct: 495 EMN-DRNSVTWCAMIGGYGMQGD 516



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 197/399 (49%), Gaps = 36/399 (9%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI-------SSKLLRLYATFGLIDEAHQVF 149
           LL +C  L ++       R++   LL   +G+        +KLL  YA  G +  A  VF
Sbjct: 35  LLPSCGTLPSL-------RVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVF 87

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP---DQFTFPRVLKACAG 206
           D      A+++    ++    +   + +A+AL+  M      P   D F     LKAC  
Sbjct: 88  DGTPRPDAYSY--GVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIR 145

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
                 G ++H DAV+ G G DGFV+N+LVDMYAK GD+  AR VF+RI  ++++S+ SM
Sbjct: 146 SADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSM 204

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGV 323
           L+G + +G   +   +F  M  +   P    I++++   S    L  G  +HG V+++G+
Sbjct: 205 LSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGL 264

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQ 380
             +  I+ +L+ +Y K G+L+ A  +FD +   D+V W ++I  ++++    +AL  F  
Sbjct: 265 MSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLD 324

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
            +   ++P+ +T  ++LSA A L  + +G  +  + V K G+         +V++Y +  
Sbjct: 325 KKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAV-KLGLVEYTVVVNALVDMYAKCQ 383

Query: 441 LIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
            + EA   +  I  K       V W ++L   Y   N+C
Sbjct: 384 AVSEANRIFGSISNK-----DVVAWNSMLSG-YAENNMC 416



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 157/307 (51%), Gaps = 11/307 (3%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LD++   L+    N I   + T A++L    QL+ +  G  +H +     L +   + + 
Sbjct: 316 LDALRLFLDKKFAN-IVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNA 374

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA    + EA+++F  +SN+   A  WNS++SGYAE     DA+ L+ QM  +G  
Sbjct: 375 LVDMYAKCQAVSEANRIFGSISNKDVVA--WNSMLSGYAENNMCNDALMLFKQMSLKGPS 432

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD  +    L A   LG + +G+  H  AV+  F  + +V  AL+++Y KCGD+  AR V
Sbjct: 433 PDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRV 492

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
           FD + +++ +++ +M+ GY   G    + D+F  M+ +G  P+ VA +SIL+  S   + 
Sbjct: 493 FDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMV 552

Query: 312 AQVHGWVLRRGVEWDLCIA----NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIH 366
                +       +++  +      ++ V ++ G L++A    D+MP Q D   W + +H
Sbjct: 553 TAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLH 612

Query: 367 A---HSK 370
               HS+
Sbjct: 613 GCELHSR 619


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 236/423 (55%), Gaps = 11/423 (2%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH L     L     + + L+  Y+  G + EA ++F  +S        WNS++  Y +
Sbjct: 159 QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRD-EVSWNSMVVAYMQ 217

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             E   A+ LY +M   G+  D FT   VL A   +  +  G + H   ++ G+  +  V
Sbjct: 218 HREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHV 277

Query: 232 LNALVDMYAKCGD-IVKARTVFDRIGNKDLISYNSMLTGY-IHHGLLVEAFDIFRGMILN 289
            + L+D+Y+KCG  ++  R VFD I N DL+ +N+M++GY ++  L  EA + FR + + 
Sbjct: 278 GSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVV 337

Query: 290 GFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVVYSKDGKLDQ 345
           G  PD    V + S  +N S    G QVHG  L+  +  + + + N+LI +YSK G L  
Sbjct: 338 GHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRD 397

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  LFD MP+ + VS+NS+I     H    ++L  F++M   G  P ++TF+S+L+ACAH
Sbjct: 398 AKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAH 457

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V+ G+  F++M +K+GI P   H++CM++L GRAG + EA  +I E + F+     W
Sbjct: 458 TGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLI-ETIPFDPGFFFW 516

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            ALL AC +HGNV +   AA +L +L+P N   + +L  IY + GRL D   V +++ DR
Sbjct: 517 SALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDR 576

Query: 523 GLE 525
           G++
Sbjct: 577 GVK 579



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 214/446 (47%), Gaps = 57/446 (12%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  YA    ++ AHQ+FD+M    + ++  N+LI+ YA  G+ + A  L+ +M E  
Sbjct: 78  NTLISAYAKESYVEVAHQLFDEMPQPDSVSY--NTLIAAYARRGDTQPAFQLFLEMREAF 135

Query: 190 VEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDMYAKCGDIV 246
           ++ D FT   ++ AC   +GLIR      L A+    G D +V   NAL+  Y+K G + 
Sbjct: 136 LDMDGFTLSGIITACGINVGLIR-----QLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 247 KARTVFDRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
           +AR +F  +  ++D +S+NSM+  Y+ H    +A +++  M + G   D   ++S+L   
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW-LFDHMPQKDVVSW 361
            N   L  G Q H  +++ G   +  + + LI +YSK G     C  +FD +   D+V W
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 362 NSIIHAHS----KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           N++I  +S       EAL  F Q++  G  PD  + V ++SAC+++ S   G ++  + +
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL 370

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMI---------------------------- 449
           +    S R+     ++ +Y + G + +A ++                             
Sbjct: 371 KLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSL 430

Query: 450 -----VEKMEFEASPVVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIK 501
                + +M F  + + + ++L AC   G V  G+      ++ F +EP+  H F  +I 
Sbjct: 431 HLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGH-FSCMID 489

Query: 502 IYGNAGRLDDVER-VERMLVDRGLEF 526
           + G AG+L + ER +E +  D G  F
Sbjct: 490 LLGRAGKLSEAERLIETIPFDPGFFF 515



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 12/219 (5%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F  N L+  YAK   +  A  +FD +   D +SYN+++  Y   G    AF +F  M   
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREA 134

Query: 290 GFDPDPVAISSILA----NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
             D D   +S I+     N  L+R   Q+H   +  G++  + + N+LI  YSK+G L +
Sbjct: 135 FLDMDGFTLSGIITACGINVGLIR---QLHALSVVTGLDSYVSVGNALITSYSKNGFLKE 191

Query: 346 ACWLFDHMPQ-KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           A  +F  + + +D VSWNS++ A   H +  +AL  + +M   G++ D  T  S+L+A  
Sbjct: 192 ARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFT 251

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ++  + +G   F   + K G        + +++LY + G
Sbjct: 252 NVQDL-LGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG 289



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 15/150 (10%)

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           LR G  +H   ++  V     ++N  +++YSK  +L  A  +FDH    +V S+N++I A
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 368 HSKDHEALI---YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---- 420
           ++K+    +    F++M +    PD +++ +L++A A  G  +   +LF  M E +    
Sbjct: 84  YAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           G +      AC +N+    GLI + +++ V
Sbjct: 140 GFTLSGIITACGINV----GLIRQLHALSV 165


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/440 (35%), Positives = 240/440 (54%), Gaps = 12/440 (2%)

Query: 93  TFASLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           TF ++L  C +  A        +H L+ +        + + L+  Y   G    A +VF 
Sbjct: 123 TFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH 182

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M+ +      W ++ISG A    Y+++ +L+ QM    V+ +  T+   L ACA     
Sbjct: 183 GMAEKNVI--TWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCALLACARSLAA 239

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R G++VH   V+ GF  D  V + L+D+Y+KCG +  A TVF      D +    +L G+
Sbjct: 240 REGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGF 299

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDL 327
             +GL  +AF++F  M+  G + D   +S++L     ++   +G Q+H  V++R    + 
Sbjct: 300 AQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNT 359

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + N L+ +YSK G+L ++  +FD MP K+ VSWNSII A   H    E    FE M+ D
Sbjct: 360 YVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKAD 419

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  P  +TF+SLL AC+H+GS K G  + + M  +YG+ PR+EHYAC+V++ GRAGL+D+
Sbjct: 420 GAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDD 479

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A S I E   F  + ++W AL+ AC  HGN  +G+ AA+KL  L+P     + LL  IY 
Sbjct: 480 AKSFI-EDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYS 538

Query: 505 NAGRLDDVERVERMLVDRGL 524
           + GR DD  +V + + + GL
Sbjct: 539 SEGRWDDRAKVMKRMSEMGL 558



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 197/404 (48%), Gaps = 35/404 (8%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTN-----------LLRKNKGISSKLLRLYATFGLI 142
           F+ LL +C +   +  G  LH  +  N            LR      + L+ +YA  G  
Sbjct: 14  FSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRR 73

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVL 201
           ++A +VFD+M  R A +  WNSLI+     G   DA+AL+ +M   +    D+ TF  VL
Sbjct: 74  EDAARVFDEMRVRDAVS--WNSLIAASRGAG---DALALFRRMLRSDARACDRATFTTVL 128

Query: 202 KAC--AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
             C  AG   +     VH   V  GF  +  V NALV  Y +CG    A  VF  +  K+
Sbjct: 129 SECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKN 188

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS-SILANASLL--RIGAQVHG 316
           +I++ +M++G     L  E+F +F G ++   D +    S ++LA A  L  R G QVHG
Sbjct: 189 VITWTAMISGMARAELYKESFSLF-GQMIRTVDANNATYSCALLACARSLAAREGQQVHG 247

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHE 373
            V++ G E DL + + L+ VYSK G ++ A  +F    + D V    I+   ++   + +
Sbjct: 248 LVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEK 307

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYAC- 431
           A   F +M   G   D  T  ++L A        +G+++ ++++++ +G++     Y C 
Sbjct: 308 AFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNT----YVCN 363

Query: 432 -MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            +VN+Y + G + E+   + ++M  + S V W +++ A   HG+
Sbjct: 364 GLVNMYSKCGELRESVR-VFDEMPSKNS-VSWNSIIAAFARHGH 405



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 112/270 (41%), Gaps = 74/270 (27%)

Query: 308 LRIGAQVHGWVLRRGVEWDLCIA-----------NSLIVVYSKDGKLDQACWLFDHMPQK 356
           LR+GA +H  V++    + LC +           NSL+ +Y++ G+ + A  +FD M  +
Sbjct: 27  LRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRREDAARVFDEMRVR 86

Query: 357 DVVSWNSIIHAHSKDHEALIYFEQMER-DGVLPDHLTFVSLLSACAHLGS---------- 405
           D VSWNS+I A     +AL  F +M R D    D  TF ++LS CA  G+          
Sbjct: 87  DAVSWNSLIAASRGAGDALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVH 146

Query: 406 -----------VKVG----------------ERLFSVMVEKYGISPRVEHYACMVNLYGR 438
                      V VG                ER+F  M EK  I+     +  M++   R
Sbjct: 147 GLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVIT-----WTAMISGMAR 201

Query: 439 AGLIDEAYSMIVEKME-FEASPVVWGALLYAC----------YLHGNVCMGETAAQKLFE 487
           A L  E++S+  + +   +A+   +   L AC           +HG V       +  FE
Sbjct: 202 AELYKESFSLFGQMIRTVDANNATYSCALLACARSLAAREGQQVHGLV------VKAGFE 255

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVER 517
              D+ H    L+ +Y   G ++D   V R
Sbjct: 256 ---DDLHVESGLMDVYSKCGLMEDALTVFR 282


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 240/430 (55%), Gaps = 10/430 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S    C +L   + G ++H L     L  +      L  +YA  G ++ A  VF  + 
Sbjct: 304 FGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIE 363

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                A  WN++I+G+A +   +++ + + QM   G+ P+  T   +L AC+   ++  G
Sbjct: 364 KPDLVA--WNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIH 272
            +VH   V+ GF  D  V N+L+ MY+KC ++  A  VF+ IGNK D++S+N++LT  + 
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
                E   + + M  +   PD V ++++L ++  +    +G+Q+H ++++ G+  D+ +
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISV 541

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
           +N+LI +Y+K G L+ A  +FD +   D++SW+S+I  +++     EA   F  M   GV
Sbjct: 542 SNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGV 601

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV +L+AC+H+G V+ G +L+  M E Y ISP  EH +CMV+L  RAG +D A 
Sbjct: 602 KPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAE 661

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I ++M F    VVW  LL AC +HGN+ +G+ AA+ + +++P N     +L  I+ ++
Sbjct: 662 DFI-KQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASS 720

Query: 507 GRLDDVERVE 516
           G   D  R+ 
Sbjct: 721 GHWKDFARLR 730



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 224/435 (51%), Gaps = 28/435 (6%)

Query: 53  SPTPLLTN-----------QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETC 101
           SP PL  +           +K   +  L+A D I Q   SS      +++ T+  L+  C
Sbjct: 55  SPCPLTVHYPHDDKIISLCKKNLHREALKAFD-IFQKCSSS-----PLKSVTYTHLINAC 108

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
             L+++EHG K+HR + T   + +  + + +L +Y   G + EA  +FD M  +   +  
Sbjct: 109 SSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVS-- 166

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W S+ISGY+  GE ++AI LY QM   G  PD FTF  ++K+C+GL   ++  ++H   +
Sbjct: 167 WTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVL 226

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  FG D    NAL+ MY K   +  A  VF RI  KDLIS+ SM+ G+   G  +EA  
Sbjct: 227 KSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALC 286

Query: 282 IFRGMILNG-FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            FR M+    + P+     S  +  S L     G Q+HG  ++ G+  DL    SL  +Y
Sbjct: 287 HFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMY 346

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFV 394
           +K G L+ A  +F H+ + D+V+WN+II      S   E+  +F QM   G++P+ +T +
Sbjct: 347 AKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVL 406

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           SLL AC+    +  G ++ S +V K G +  +     ++++Y +   +++A   + E + 
Sbjct: 407 SLLCACSEPVMLNHGIQVHSYIV-KMGFNLDIPVCNSLLSMYSKCSNLNDALQ-VFEDIG 464

Query: 455 FEASPVVWGALLYAC 469
            +A  V W  LL AC
Sbjct: 465 NKADIVSWNTLLTAC 479



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             G+     T  SLL  C +   + HGI++H  I       +  + + LL +Y+    ++
Sbjct: 395 HTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLN 454

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A QVF+ + N+ A    WN+L++   +  +  + + L   M    ++PD  T   VL +
Sbjct: 455 DALQVFEDIGNK-ADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVS 513

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +    VG ++H   ++ G   D  V NAL++MY KCG +  AR +FD IGN D+IS+
Sbjct: 514 SGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISW 573

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           +S++ GY   G   EAF++FR M   G  P+ +    IL   S   IG    G  L R +
Sbjct: 574 SSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACS--HIGMVEEGLKLYRTM 631

Query: 324 EWDLCIA------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           + D  I+      + ++ + ++ G LD A      MP   DVV W +++ A
Sbjct: 632 QEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAA 682


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 247/443 (55%), Gaps = 10/443 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF +++  C     VE    LH +           + + ++ +Y   G+++E
Sbjct: 274 SGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEE 333

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A + F  M  R   +  W +L+SGY + G  + A+  + Q+ E GV  D   F  +L  C
Sbjct: 334 AEKSFCGMGERNLVS--WTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGC 391

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +    + +G ++H   V+ G+  D  V  AL+D+YAKC  +  AR VF  + +K+++S+N
Sbjct: 392 SECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFN 451

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++L+GYI      +A  +F  + L    PD V  + +L   A+ + L  G  +H ++++ 
Sbjct: 452 AILSGYIGADE-EDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKT 510

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G E +  + N++I +Y+K G +  AC LF  M   D +SWN++I A   H +  +ALI F
Sbjct: 511 GFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILF 570

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M+++  +PD +T +S+L AC++ G ++ G  LF+ M  KYGI P +EH+ACMV+L GR
Sbjct: 571 EEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGR 630

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + EA S I  +  F  SP++W  L++ C LHG++  G+ A++ L +L P+   ++ L
Sbjct: 631 AGYLSEAMSFI-NRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYIL 689

Query: 499 LIKIYGNAGRLDDVERVERMLVD 521
           +  +Y   G L++  RV  ++ D
Sbjct: 690 VSNLYAGGGMLNEAARVRTVMND 712



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 197/386 (51%), Gaps = 10/386 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T + +L+ C  L+ +  G ++H  +      ++  + + L+ +Y+  G +  A +V+  +
Sbjct: 181 TCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNL 240

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +       N +IS Y + G  E AI ++  +   G+EP+ +TF  V+ AC G   + V
Sbjct: 241 AYKDVRCL--NFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEV 298

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
              +H   ++ G G +  V NA+V +Y K G + +A   F  +G ++L+S+ ++L+GY+ 
Sbjct: 299 LRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVK 358

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
           +G   +A + F  ++  G   D    +++L   S    L +G Q+HG+V++ G   D+ +
Sbjct: 359 NGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSV 418

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH--SKDHEALIYFEQMERDGVL 387
             +LI +Y+K  KL  A  +F  +  K++VS+N+I+  +  + + +A+  F Q+    + 
Sbjct: 419 GTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIGADEEDAMALFSQLRLADIK 478

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PD +TF  LLS  A    +  G+ L + ++ K G          ++ +Y + G I +A  
Sbjct: 479 PDSVTFARLLSLSADQACLVKGKCLHAYII-KTGFEANPSVGNAVITMYAKCGSIGDACQ 537

Query: 448 MIVEKMEFEASPVVWGALLYACYLHG 473
           +       ++  + W A++ A  LHG
Sbjct: 538 LFYSMNYLDS--ISWNAVISAYALHG 561



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 165/319 (51%), Gaps = 15/319 (4%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ LY  F  + +A  VFD+M  R      W +LI G+ ++ + E    +  +M   G
Sbjct: 117 NNLVNLYGKFNKLGDAQSVFDEMLVRNTIT--WTTLIKGHLQVNDVESVFRIAREMYWVG 174

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
            E ++ T   +L+AC  L  +  GE++H   ++ GF  D FV  +L+ MY++CGD+  A 
Sbjct: 175 EEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAE 234

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA------ 303
            V+  +  KD+   N M++ Y   G   +A  +F  ++ +G +P+    +++++      
Sbjct: 235 KVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDI 294

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +  +LR+   +HG  ++ G   ++ + N+++ VY K G L++A   F  M ++++VSW +
Sbjct: 295 DVEVLRV---LHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTA 351

Query: 364 IIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           ++  + K+    +AL  F Q+   GV  D   F +LL  C+   ++ +G ++   +V K 
Sbjct: 352 LLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVV-KL 410

Query: 421 GISPRVEHYACMVNLYGRA 439
           G    V     +++LY + 
Sbjct: 411 GYVHDVSVGTALIDLYAKC 429



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 172/380 (45%), Gaps = 44/380 (11%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +AL+   Q LE     G+   +  FA+LL+ C + K +  G+++H  +       +  + 
Sbjct: 364 KALEGFSQILEL----GVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVG 419

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ LYA    +  A  VF  + ++   +F  N+++SGY    E EDA+AL+ Q+    
Sbjct: 420 TALIDLYAKCRKLRSARLVFHSLLDKNIVSF--NAILSGYIGADE-EDAMALFSQLRLAD 476

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           ++PD  TF R+L   A    +  G+ +H   ++ GF  +  V NA++ MYAKCG I  A 
Sbjct: 477 IKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDAC 536

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309
            +F  +   D IS+N++++ Y  HG   +A  +F  M    F PD + I S+L   S   
Sbjct: 537 QLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACS--- 593

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
                +  +L  G     C+ N +   Y    +++    + D + +   +S         
Sbjct: 594 -----YSGLLEEG----FCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLS--------- 635

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE----RLFSVMVEKYGISPR 425
              EA+ +  +    G     L + +L+  C   G +  G+     L  +  E+ G    
Sbjct: 636 ---EAMSFINRSPFSG---SPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAG---- 685

Query: 426 VEHYACMVNLYGRAGLIDEA 445
              Y  + NLY   G+++EA
Sbjct: 686 --SYILVSNLYAGGGMLNEA 703



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 145/285 (50%), Gaps = 11/285 (3%)

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           +P++L+   G G + +G+ +H    + G+  D F  N LV++Y K   +  A++VFD + 
Sbjct: 81  WPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEML 140

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA----SLLRIGA 312
            ++ I++ +++ G++    +   F I R M   G + +    S IL       +L+R G 
Sbjct: 141 VRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVR-GE 199

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
           Q+HG+V++RG + D+ +  SLI +YS+ G L  A  ++ ++  KDV   N +I  + K  
Sbjct: 200 QIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAG 259

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              +A+  F  +   G+ P+  TF +++SAC     V+V  R+   M  K G    +   
Sbjct: 260 CGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEV-LRVLHGMCIKCGCGDEISVG 318

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
             +V++Y + G+++EA          E + V W ALL     +GN
Sbjct: 319 NAIVSVYVKHGMLEEAEKSFCGMG--ERNLVSWTALLSGYVKNGN 361


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 232/431 (53%), Gaps = 60/431 (13%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE---YEDAIALYFQMEEEG-VEPDQFTF 197
           ID A  VF QM     F   WN+++   AE  +     +A+ L+  M  +G V+P++FTF
Sbjct: 68  IDYARAVFRQMPEPNCFC--WNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTF 125

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC--------------- 242
           P VLKACA    +R G+++H   V+FGF  D FV++ LV MY  C               
Sbjct: 126 PSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVV 185

Query: 243 --------------------------------GDIVKARTVFDRIGNKDLISYNSMLTGY 270
                                           GDI  A+ +FD +  + ++S+N M++GY
Sbjct: 186 DFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGY 245

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
             +G  +EA ++F+ M  +  DP+ V + S+L   A    L +G  +H +  +  +E D 
Sbjct: 246 AQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDD 305

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + ++L+ +YSK G +D+A  +F+ +P+++ ++W++II A   H +  +A+I+F  M + 
Sbjct: 306 VLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKA 365

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           GV P+ + ++ +LSAC+H G V+ G   FS MV+  G+ PR+EHY CMV+L GRAG ++E
Sbjct: 366 GVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEE 425

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  +I   M  E   V+W ALL AC +H N+ MGE  A+ L EL P +  ++  L  +Y 
Sbjct: 426 AEELI-RNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYA 484

Query: 505 NAGRLDDVERV 515
           + G  + V RV
Sbjct: 485 SLGNWEAVARV 495



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 174/400 (43%), Gaps = 88/400 (22%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT-------------- 138
           TF S+L+ C +   +  G ++H LI      +++ + S L+R+Y                
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 139 ---------------------------------FGLIDEAHQVFDQMSNRTAFAFPWNSL 165
                                             G I  A  +FD+M  R+  +  WN +
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVS--WNVM 241

Query: 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225
           ISGYA+ G + +AI L+ +M+   ++P+  T   VL A A +G + +G+ +HL A +   
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301

Query: 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
             D  + +ALVDMY+KCG I +A  VF+ +  ++ I++++++  +  HG   +A   F  
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 286 MILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDG 341
           M   G  P+ VA   IL   ++A L+  G      +++  G++  +     ++ +  + G
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAG 421

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            L++A  L  +MP                               + PD + + +LL AC 
Sbjct: 422 HLEEAEELIRNMP-------------------------------IEPDDVIWKALLGACK 450

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAG 440
              ++K+GER+   ++E   ++P     Y  + NLY   G
Sbjct: 451 MHKNLKMGERVAETLME---LAPHDSGSYVALSNLYASLG 487



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           ++ Q+++SS    I     T  S+L    ++ A+E G  +H     N +  +  + S L+
Sbjct: 256 NLFQEMQSS---NIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALV 312

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            +Y+  G IDEA QVF+ +  R A    W+++I  +A  G  EDAI  +  M + GV P+
Sbjct: 313 DMYSKCGSIDEALQVFETLPKRNAIT--WSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPN 370

Query: 194 QFTFPRVLKACAGLGLIRVG 213
              +  +L AC+  GL+  G
Sbjct: 371 DVAYIGILSACSHAGLVEEG 390


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 241/448 (53%), Gaps = 10/448 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S + +G +V   TF S L  C+     E G  LH L+  + L  N+ I + L+ +Y  
Sbjct: 440 LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 499

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G + E+ +V  QM  R   A  WN+LI GYAE  + + A+A +  M  EGV  +  T  
Sbjct: 500 IGEMSESRRVLLQMPRRDVVA--WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVV 557

Query: 199 RVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
            VL AC   G L+  G+ +H   V  GF  D  V N+L+ MYAKCGD+  ++ +F+ + N
Sbjct: 558 SVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN 617

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQV 314
           +++I++N+ML    HHG   E   +   M   G   D  + S  L+ A+ L +   G Q+
Sbjct: 618 RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQL 677

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           HG  ++ G E D  I N+   +YSK G++ +   +      + + SWN +I A   H   
Sbjct: 678 HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYF 737

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            E    F +M   G+ P H+TFVSLL+AC+H G V  G   + ++   +G+ P +EH  C
Sbjct: 738 EEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCIC 797

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +++L GR+G + EA + I  KM  + + +VW +LL +C +HGN+  G  AA+ L +LEP+
Sbjct: 798 VIDLLGRSGRLAEAETFI-SKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 856

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERML 519
           ++  + L   ++   GR +DVE V + +
Sbjct: 857 DDSVYVLSSNMFATTGRWEDVENVRKQM 884



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 178/359 (49%), Gaps = 10/359 (2%)

Query: 122 LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
           L     + + L+ +  + G +D A+ +FDQMS R   +  WNS+ + YA+ G  E++  +
Sbjct: 281 LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTIS--WNSIAAAYAQNGHIEESFRI 338

Query: 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
           +  M     E +  T   +L     +   + G  +H   V+ GF     V N L+ MYA 
Sbjct: 339 FSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAG 398

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
            G  V+A  VF ++  KDLIS+NS++  +++ G  ++A  +   MI +G   + V  +S 
Sbjct: 399 AGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSA 458

Query: 302 LA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           LA          G  +HG V+  G+ ++  I N+L+ +Y K G++ ++  +   MP++DV
Sbjct: 459 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV 518

Query: 359 VSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           V+WN++I  +++D +   AL  F+ M  +GV  +++T VS+LSAC   G +    +    
Sbjct: 519 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 578

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            +   G          ++ +Y + G  D + S  +       + + W A+L A   HG+
Sbjct: 579 YIVSAGFESDEHVKNSLITMYAKCG--DLSSSQDLFNGLDNRNIITWNAMLAANAHHGH 635



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 177/368 (48%), Gaps = 31/368 (8%)

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           Q+     G  +H L    L+R +   ++ L+ +Y  FG +  A  +FD M  R   +  W
Sbjct: 84  QITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVS--W 141

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAV 221
           N+++SG   +G Y + +  + +M + G++P  F    ++ AC   G + R G +VH    
Sbjct: 142 NTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVA 201

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G   D +V  A++ +Y   G +  +R VF+ + +++++S+ S++ GY   G   E  D
Sbjct: 202 KSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVID 261

Query: 282 IFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           I++   L                      G Q+ G V++ G+E  L + NSLI +    G
Sbjct: 262 IYKDESL----------------------GRQIIGQVVKSGLESKLAVENSLISMLGSMG 299

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLS 398
            +D A ++FD M ++D +SWNSI  A++++    E+   F  M R     +  T  +LLS
Sbjct: 300 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 359

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
              H+   K G  +  ++V K G    V     ++ +Y  AG   EA +++ ++M  +  
Sbjct: 360 VLGHVDHQKWGRGIHGLVV-KMGFDSVVCVCNTLLRMYAGAGRSVEA-NLVFKQMPTK-D 416

Query: 459 PVVWGALL 466
            + W +L+
Sbjct: 417 LISWNSLM 424



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 27/318 (8%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           D  +   ++    G++    T  S+L  C      +E G  LH  I +     ++ + + 
Sbjct: 535 DKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNS 594

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA  G +  +  +F+ + NR      WN++++  A  G  E+ + L  +M   GV 
Sbjct: 595 LITMYAKCGDLSSSQDLFNGLDNRNIIT--WNAMLAANAHHGHGEEVLKLVSKMRSFGVS 652

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            DQF+F   L A A L ++  G+++H  AV+ GF  D F+ NA  DMY+KCG+I +   +
Sbjct: 653 LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 712

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
                N+ L S+N +++    HG   E    F  M+  G  P  V   S+L   S     
Sbjct: 713 LPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS----- 767

Query: 312 AQVHGWVLRRGVEWDLCIANS------------LIVVYSKDGKLDQACWLFDHMPQK--D 357
              HG ++ +G+ +   IA              +I +  + G+L +A      MP K  D
Sbjct: 768 ---HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPND 824

Query: 358 VVSWNSIIHAHSKDHEAL 375
           +V W S++ A  K H  L
Sbjct: 825 LV-WRSLL-ASCKIHGNL 840


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 228/402 (56%), Gaps = 13/402 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           I   L+ +YA +GL+D+A +VF+ +  +      WN+LISG +  G + ++++L+ +M +
Sbjct: 342 IGVALVDMYAKYGLLDDARKVFEWIPRKDLLL--WNALISGCSHGGCHGESLSLFCRMRK 399

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG + ++ T   VLK+ A L  I    +VH  A + GF  D  V+N L+D Y KC  +  
Sbjct: 400 EGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRY 459

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A  VF+   + ++I++ SM+T         +A  +F  M+  G +PDP  +SS+L   A+
Sbjct: 460 ANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACAS 519

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            S    G QVH  +++R    D+   N+L+  Y+K G ++ A   F  +P K VVSW+++
Sbjct: 520 LSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAM 579

Query: 365 I-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           I     H H K   AL  F +M  + + P+H+T  S+L AC H G V   +  FS M E 
Sbjct: 580 IGGLAQHGHGK--RALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEM 637

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +GI    EHY+CM++L GRAG +D+A  + V  M FEA+  VWGALL A  +H +  +G+
Sbjct: 638 FGIDRTEEHYSCMIDLLGRAGKLDDAMEL-VNSMPFEANAAVWGALLAASRVHRDPELGK 696

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
            AA+KLF LEP+      LL   Y +AG  D+V +V +++ D
Sbjct: 697 LAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKD 738



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 179/320 (55%), Gaps = 10/320 (3%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G+++H +  +  L  +  +++ L+ +Y  FG +DEA +VFD+ + R   A  WN ++S +
Sbjct: 119 GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAA-RDRNAVSWNGMMSAF 177

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            +     DA+ L+ +M   GV P++F F  V+ AC G   +  G KVH   VR G+  D 
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F  NALVDMY+K GDI  A  VF ++   D++S+N+ ++G + HG    A ++   M  +
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 290 GFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           G  P+   +SSIL   +    GA     Q+HG++++   + D  I  +L+ +Y+K G LD
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 345 QACWLFDHMPQKDVVSWNSIIH--AHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +F+ +P+KD++ WN++I   +H   H E+L  F +M ++G   +  T  ++L + A
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417

Query: 402 HLGSVKVGERLFSVMVEKYG 421
            L ++    ++ + + EK G
Sbjct: 418 SLEAISDTTQVHA-LAEKIG 436



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 202/403 (50%), Gaps = 31/403 (7%)

Query: 92  ETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           E+ + LL      +++  G  +H  L+ + LL       + LL  Y+   L   A +VFD
Sbjct: 5   ESISPLLTRYAATQSLFLGAHIHAHLLKSGLLH---AFRNHLLSFYSKCRLPGSARRVFD 61

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +  +    +  W+SL++ Y+      +A+A +  M   GV  ++F  P VLK     GL 
Sbjct: 62  ETPDPCHVS--WSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL- 118

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTG 269
             G +VH  AV  G   D FV NALV MY   G + +AR VFD    +++ +S+N M++ 
Sbjct: 119 --GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           ++ +    +A ++F  M+ +G  P+    S ++     +  L  G +VH  V+R G + D
Sbjct: 177 FVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKD 236

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           +  AN+L+ +YSK G +  A  +F  +P+ DVVSWN+ I     H  D  AL    QM+ 
Sbjct: 237 VFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 384 DGVLPDHLTFVSLLS--ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            G++P+  T  S+L   A A  G+  +G ++   M++    S      A +V++Y + GL
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVA-LVDMYAKYGL 355

Query: 442 IDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGET 480
           +D+A  +      FE  P    ++W AL+  C  HG  C GE+
Sbjct: 356 LDDARKV------FEWIPRKDLLLWNALISGCS-HGG-CHGES 390



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 169/366 (46%), Gaps = 41/366 (11%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G  +   T A++L++   L+A+    ++H L        +  + + L+  Y     + 
Sbjct: 399 KEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLR 458

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A++VF++ S+    AF   S+I+  ++    EDAI L+ +M  +G+EPD F    +L A
Sbjct: 459 YANKVFEEHSSDNIIAF--TSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA L     G++VH   ++  F  D F  NALV  YAKCG I  A   F  + +K ++S+
Sbjct: 517 CASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSW 576

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR-- 321
           ++M+ G   HG    A D+FR M+     P+ + ++S+L   +   +  +  G+      
Sbjct: 577 SAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKE 636

Query: 322 --GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEALIYF 378
             G++      + +I +  + GKLD A  L + MP + +   W +++ A           
Sbjct: 637 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAA----------- 685

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            ++ RD   P+             LG +   E+LF +  EK G       +  + N Y  
Sbjct: 686 SRVHRD---PE-------------LGKL-AAEKLFVLEPEKSGT------HVLLANTYAS 722

Query: 439 AGLIDE 444
           AG+ DE
Sbjct: 723 AGMWDE 728


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 153/498 (30%), Positives = 260/498 (52%), Gaps = 60/498 (12%)

Query: 86  GITVQTE--TFASLLETCYQLKAVEHGIKLHRL-------------IPTNLLRKNKGISS 130
           G+ V+ +   F  +L+ C  L AVE G ++H +             + +   RK+    +
Sbjct: 144 GVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHDGDMKSAFEMFSRFSRKSAASYN 203

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEE 188
            ++  Y   G + +A ++FD+M           WNS+ISGY +   +++A +L+  + +E
Sbjct: 204 AMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKE 263

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G+EPD FT   VL  CA +  IR G++ H  A+  G   +  V  ALV+MY+KC DIV A
Sbjct: 264 GIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAA 323

Query: 249 RTVFDRIGNKDLISYNSMLTGY-----------IHHGLLVEAFD---------------- 281
           +  FD +  +DL ++N++++GY           +H  +  + F+                
Sbjct: 324 QMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVEN 383

Query: 282 --------IFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIA 330
                   +F  M +    PD   +  ILA  S L     G QVH + +R G + D+ I 
Sbjct: 384 KQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIG 443

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
            +L+ +Y+K G +     +++ +   ++VS N+++ A   H    E +  F +M    V 
Sbjct: 444 AALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVR 503

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PDH+TF+++LS+C H GS+++G    ++MV  Y + P ++HY CMV+L  RAG + EAY 
Sbjct: 504 PDHVTFLAVLSSCVHAGSLEIGHECLALMV-AYNVMPSLKHYTCMVDLLSRAGQLYEAYE 562

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
           +I + +  EA  V W ALL  C++H  V +GE AA+KL ELEP+N  N+ +L  +Y +AG
Sbjct: 563 LI-KNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAG 621

Query: 508 RLDDVERVERMLVDRGLE 525
           +   + +  +++ D G++
Sbjct: 622 KWHYLTQTRQLMKDMGMQ 639



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 237/485 (48%), Gaps = 77/485 (15%)

Query: 56  PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV------QTETFASLLETCYQLKAVEH 109
           PLL++    P+T+  +  + +  L S++   +T+       + T+AS+L++C    +   
Sbjct: 13  PLLSHP---PRTRSSSNRASLSLLPSNLNPHLTLLYHEPPSSTTYASILDSC---GSPIL 66

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G +LH     +    ++ +++KLL++YA     + A  VFD M  R   +  W +L+  Y
Sbjct: 67  GKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHS--WTALLRVY 124

Query: 170 AELGEYEDAIALYFQMEEEGVEP--DQFTFPRVLKACAGLGLIRVGEKVHLDAVR----F 223
            E+G +E+A  L+ Q+  EGV    D F FP VLK C GL  + +G ++H  A++     
Sbjct: 125 IEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHDGDM 184

Query: 224 GFGFDGF---------VLNALVDMYAKCGDIVKARTVFDRIG----NKDLISYNSMLTGY 270
              F+ F           NA++  Y + G++ KA+ +FDR+      KD IS+NSM++GY
Sbjct: 185 KSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGY 244

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
           +   L  EA+ +FR ++  G +PD   + S+L   A+ + +R G + H   + RG++ + 
Sbjct: 245 VDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNS 304

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERD 384
            +  +L+ +YSK   +  A   FD + ++D+ +WN++I  +++ ++A    E   +M RD
Sbjct: 305 IVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRD 364

Query: 385 G-----------------------------------VLPDHLTFVSLLSACAHLGSVKVG 409
           G                                   + PD  T   +L+AC+ L +++ G
Sbjct: 365 GFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRG 424

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           +++ +  + + G    V   A +V++Y + G +   Y   V  M    + V   A+L A 
Sbjct: 425 KQVHAYSI-RAGHDSDVHIGAALVDMYAKCGDVKHCYR--VYNMISNPNLVSHNAMLTAY 481

Query: 470 YLHGN 474
            +HG+
Sbjct: 482 AMHGH 486



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 40/329 (12%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           S+ +DL   ++ GI   + T  S+L  C  + ++  G + H L     L+ N  +   L+
Sbjct: 255 SLFRDL---LKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALV 311

Query: 134 RLYATFGLIDEAHQVFDQMSNR---------TAFA------------------------F 160
            +Y+    I  A   FD +S R         + +A                        +
Sbjct: 312 EMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVY 371

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            WN +I+GY E  +Y+ A+ L+ +M+   + PD +T   +L AC+ L  I+ G++VH  +
Sbjct: 372 TWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYS 431

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
           +R G   D  +  ALVDMYAKCGD+     V++ I N +L+S+N+MLT Y  HG   E  
Sbjct: 432 IRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGI 491

Query: 281 DIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            +FR M+ +   PD V   ++L++   A  L IG +    ++   V   L     ++ + 
Sbjct: 492 ALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLL 551

Query: 338 SKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           S+ G+L +A  L  ++P + D V+WN+++
Sbjct: 552 SRAGQLYEAYELIKNLPTEADAVTWNALL 580


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 228/385 (59%), Gaps = 9/385 (2%)

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           +VF+ M  R   +  WN++ISG A+ G +EDA+ +  +M    + PD FT   VL   A 
Sbjct: 151 KVFEMMPKRDIVS--WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 208

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
              +  G+++H  A+R G+  D F+ ++L+DMYAKC  +  +  VF  +   D IS+NS+
Sbjct: 209 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 268

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           + G + +G+  E    F+ M++    P+ V+ SSI+   A+ + L +G Q+HG+++R   
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
           + ++ IA++L+ +Y+K G +  A W+FD M   D+VSW ++I     H   ++A+  F++
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ME +GV P+++ F+++L+AC+H G V    + F+ M + Y I P +EHYA + +L GR G
Sbjct: 389 MEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVG 448

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            ++EAY  I + M  E +  VW  LL AC +H N+ + E  ++KLF ++P N   + LL 
Sbjct: 449 RLEEAYEFISD-MHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLS 507

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            IY  AGR  D  ++   + D+G++
Sbjct: 508 NIYSAAGRWKDARKLRIAMRDKGMK 532



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 132/232 (56%), Gaps = 9/232 (3%)

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANA 305
           R VF+ +  +D++S+N++++G   +G+  +A  + R M      PD   +SS+L   A  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             L  G ++HG+ +R G + D+ I +SLI +Y+K  ++D +C +F  +PQ D +SWNSII
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
               ++    E L +F+QM    + P+H++F S++ ACAHL ++ +G++L   ++ +   
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII-RSRF 328

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
              V   + +V++Y + G I  A   I +KME     V W A++    LHG+
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTA-RWIFDKMEL-YDMVSWTAMIMGYALHGH 378



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 118/214 (55%), Gaps = 2/214 (0%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S+L    +   +  G ++H     N    +  I S L+ +YA    +D++ +VF  +
Sbjct: 198 TLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYML 257

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 +  WNS+I+G  + G +++ +  + QM    ++P+  +F  ++ ACA L  + +
Sbjct: 258 PQHDGIS--WNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHL 315

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   +R  F  + F+ +ALVDMYAKCG+I  AR +FD++   D++S+ +M+ GY  
Sbjct: 316 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 375

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           HG   +A  +F+ M + G  P+ VA  ++L   S
Sbjct: 376 HGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACS 409



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 132/306 (43%), Gaps = 47/306 (15%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M   G  PD   FP VLK+C  +  +R GE VH   +R G GFD +  NAL++MY+K   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIH----------HGLLVEAFDIFRGMILNGFDPD 294
           + +        G       + ML G             H L  E  +   G+  NG   D
Sbjct: 61  LEE--------GGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNG---D 109

Query: 295 PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK----LDQACWLF 350
              +S+IL   +  +        V   G   D         VYSK  K    L     +F
Sbjct: 110 LNQMSNILYQVNTYKK-------VFDEGKTSD---------VYSKKEKESYYLGSLRKVF 153

Query: 351 DHMPQKDVVSWNSIIHAHSKD--HE-ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           + MP++D+VSWN++I  ++++  HE AL+   +M    + PD  T  S+L   A   ++ 
Sbjct: 154 EMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLL 213

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G+ +    + + G    V   + ++++Y +   +D+  S  V  M  +   + W +++ 
Sbjct: 214 KGKEIHGYAI-RNGYDADVFIGSSLIDMYAKCTRVDD--SCRVFYMLPQHDGISWNSIIA 270

Query: 468 ACYLHG 473
            C  +G
Sbjct: 271 GCVQNG 276


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 239/424 (56%), Gaps = 11/424 (2%)

Query: 110 GIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           G ++H L I    L  +  +S   L +Y   G +  A  +F +M NR   A  WN++++ 
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVA--WNAVMTN 194

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
               G   + I  YF + E G  P+  +      ACAG   + +GE+ H   V+ GF  D
Sbjct: 195 AVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMD 254

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             VLN++VD Y KC    KAR VFD +G ++ +S+ SM+  Y  +G   EAF  + G   
Sbjct: 255 VSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARR 314

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G +P    +SS L   +    L +G  +H   +R  ++ ++ +A++L+ +Y K G ++ 
Sbjct: 315 SGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVED 374

Query: 346 ACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQMERDG-VLPDHLTFVSLLSACA 401
           A  +F   PQ+++V+WN++I  +AH  D + AL+ F+ M R G   P+++T V+++++C+
Sbjct: 375 AEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCS 434

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
             G  K G  LF  M E++GI PR EHYAC+V+L GRAG+ ++AY  +++ M    S  V
Sbjct: 435 RGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYE-VIQGMPMRPSISV 493

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WGALL AC +HG   +G  AA+KLFEL+P +  N  LL  ++ +AGR  +   + + + +
Sbjct: 494 WGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKN 553

Query: 522 RGLE 525
            G++
Sbjct: 554 VGIK 557



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 163/313 (52%), Gaps = 11/313 (3%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL-GLIRVGEKVHLDA 220
           + + ISG A+ G    A++ +  M   G+ P+ FTFP   KA A       +G ++H  A
Sbjct: 85  YTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLA 144

Query: 221 VRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           +RFG+   D FV  A +DMY K G +  AR +F  + N++++++N+++T  +  G  +E 
Sbjct: 145 IRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLET 204

Query: 280 FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
            + + G+   G  P+ V+  +     A A  L +G Q HG+V++ G E D+ + NS++  
Sbjct: 205 IEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDF 264

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTF 393
           Y K     +A  +FD M  ++ VSW S++ A+++   + EA   +    R G  P     
Sbjct: 265 YGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMV 324

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            S L+ CA L  + +G  L +V V +  I   +   + +V++YG+ G +++A  +  E  
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAV-RSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383

Query: 454 EFEASPVVWGALL 466
             + + V W A++
Sbjct: 384 --QRNLVTWNAMI 394



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 55/316 (17%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +S L TC  L  +  G  LH +   + +  N  ++S L+ +Y   G +++A Q+F +   
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQ 384

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 213
           R      WN++I GYA +G+ ++A+ ++  M   G   P+  T   V+ +C+  GL + G
Sbjct: 385 RNLVT--WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDG 442

Query: 214 EKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNKDLIS-YNSMLTGY 270
            ++  + +R  FG +        +VD+  + G   +A  V   +  +  IS + ++L   
Sbjct: 443 YEL-FETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGAC 501

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDP------VAISSILANASLLRIGAQVHGWVLRRGVE 324
             HG      ++ R      F+ DP      V +S++ A+A        +   +   G++
Sbjct: 502 KMHG----KTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFE---- 379
            D                           P    V+W +++H   +KD +  +Y E    
Sbjct: 558 KD---------------------------PGCSWVTWKNVVHVFRAKDTKHEMYNEIQAL 590

Query: 380 ------QMERDGVLPD 389
                 QM+  G +PD
Sbjct: 591 LSKLRKQMQAAGYMPD 606


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 231/439 (52%), Gaps = 49/439 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ ++L+ C     V  G+++H  +  + L  +  I S  +R+YA+FG + EA ++ D  
Sbjct: 140 TYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK 199

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 A  WN++I GY   GE E A  L+  M      PD+                  
Sbjct: 200 GGEVD-AVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMIS-------------- 238

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
                               NA++  +++CG +  AR  FD +  +D IS+++M+ GYI 
Sbjct: 239 ------------------TWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQ 280

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G  +EA +IF  M      P    + S+L   AN   L  G  +H +  R  ++ D  +
Sbjct: 281 EGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVL 340

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             SL+ +Y+K G++D A  +F+ M  K+V SWN++I     H +  +A+  F +M+   +
Sbjct: 341 GTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---I 397

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV +L+ACAH G V+ G  +F+ M ++YG+ P++EHY C+V+L GRAGL+ EA 
Sbjct: 398 YPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA- 456

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             +V  +  E +P VWGALL AC  HGNV +GE   + L ELEP N   + LL  IY  A
Sbjct: 457 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 516

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++V  V +++ +RG++
Sbjct: 517 GRWEEVGEVRKLMKERGIK 535


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 230/441 (52%), Gaps = 46/441 (10%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-- 185
           +S+ L+  YA  G +  A  VFD+M  R   +  WNSLIS  A  G Y + + L+ +   
Sbjct: 153 VSNALITAYANAGDMRSARAVFDEMPRRDVVS--WNSLISACARAGWYRECLDLFQEFVR 210

Query: 186 ----EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
               + +GV P+  T   VL ACA L ++  G  VH  A   G   D  V N+++  YAK
Sbjct: 211 VRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAK 270

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR---------------GM 286
           CG +  AR + D +  KD ISY++M+TGY+++G + E   +FR               G+
Sbjct: 271 CGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGL 330

Query: 287 ILNGFDPDPVAI------SSILANASLLRI------------GA-QVHGWVLRRGVEWDL 327
           + NG   D + +      S +L N++ L I            GA Q HG+ +R   +  +
Sbjct: 331 VQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSI 390

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + ++LI  Y+K G LD A  +F     +  + W SII A   H +  EAL  F QM   
Sbjct: 391 RLVSALIDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITA 450

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  PD +TF ++LSACAH G V    ++F+ M   +GISP +E YACMV+   RAG++ E
Sbjct: 451 GAKPDTVTFTTVLSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKE 510

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  + V KM FE +  VWGALL    + G+V  G  A  +LF +EP N  N+ ++  +Y 
Sbjct: 511 AVKL-VNKMPFEPNAKVWGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYS 569

Query: 505 NAGRLDDVERVERMLVDRGLE 525
           NAG+ ++ E +  ML   GLE
Sbjct: 570 NAGKWEEAETIRSMLWGVGLE 590



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 215/475 (45%), Gaps = 62/475 (13%)

Query: 92  ETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
             +  L++ C +   +    ++H RL+  ++   N  ++SKL+ LY+    + +A +VFD
Sbjct: 15  RAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNF-LASKLISLYSRADRLRDARRVFD 73

Query: 151 QMSNRTAFAFPWNS-LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
            +   + FA  WN+ LIS      +   A+ L+       V PD+ T   +L++ A  G 
Sbjct: 74  SIPQPSLFA--WNAILISLSLHSPDPSAAVRLF---ASSAVSPDEITLSTLLRSLAASGP 128

Query: 210 IR---VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
                V  ++H  A   GFG D FV NAL+  YA  GD+  AR VFD +  +D++S+NS+
Sbjct: 129 ALSPLVTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSL 188

Query: 267 LTGYIHHGLLVEAFDIFRGMIL------NGFDPDPVAISSILANASLLRI---GAQVHGW 317
           ++     G   E  D+F+  +       +G  P+ V ++S+L   + L++   G  VH +
Sbjct: 189 ISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRF 248

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS----------------- 360
               G++ D+ + NS+I  Y+K G+L  A  L D M +KD +S                 
Sbjct: 249 AAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEG 308

Query: 361 --------------WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
                         WNS+I     + +  + L   ++M    VLP+  T   ++ +    
Sbjct: 309 MQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSF 368

Query: 404 GSVKVGERLFSVMVEK-YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            ++   ++     +   Y  S R+   + +++ Y +AG +D A    V K+    S +VW
Sbjct: 369 STLLGAKQAHGYAIRNDYDQSIRL--VSALIDAYAKAGFLDTARK--VFKLTEHRSTIVW 424

Query: 463 GALLYACYLHGNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERV 515
            +++ A   HG      +   ++     +PD    F  ++    ++G++ +  +V
Sbjct: 425 TSIISAVAAHGEAVEALSLFNQMITAGAKPDTV-TFTTVLSACAHSGKVAEARKV 478



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 168/407 (41%), Gaps = 91/407 (22%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NG+TV      S+L  C QLK V+ GI +HR    + L  +  + + ++  YA  G +  
Sbjct: 222 NGVTVT-----SVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQY 276

Query: 145 AHQVFDQMSNRTAFAFP-----------------------------WNSLISGYAELGEY 175
           A Q+ D M+ + + ++                              WNS+I+G  + G  
Sbjct: 277 ARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQ 336

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
            D + L  +M    V P+  T   V+ +      +   ++ H  A+R  +     +++AL
Sbjct: 337 SDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSAL 396

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +D YAK G +  AR VF    ++  I + S+++    HG  VEA  +F  MI  G  PD 
Sbjct: 397 IDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDT 456

Query: 296 VAISSILANAS----------LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           V  +++L+  +          +      V G  +   +E   C+ ++L    S+ G L +
Sbjct: 457 VTFTTVLSACAHSGKVAEARKVFNSMQAVFG--ISPVIEQYACMVSAL----SRAGMLKE 510

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           A  L + MP                       FE        P+   + +LL+  A +G 
Sbjct: 511 AVKLVNKMP-----------------------FE--------PNAKVWGALLNGAAVVGD 539

Query: 406 VKVG----ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           V+ G    +RLF +  +  G      +Y  M NLY  AG  +EA ++
Sbjct: 540 VEFGRYAFDRLFVIEPKNTG------NYIVMANLYSNAGKWEEAETI 580



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%)

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            V PD   +  +++ CA  G +    ++H   V        F+ + L+ +Y++   +  A
Sbjct: 9   AVPPDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRDA 68

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----AN 304
           R VFD I    L ++N++L     H     A    R    +   PD + +S++L    A+
Sbjct: 69  RRVFDSIPQPSLFAWNAILISLSLHSPDPSA--AVRLFASSAVSPDEITLSTLLRSLAAS 126

Query: 305 ASLLR--IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
              L   +  ++H     RG   DL ++N+LI  Y+  G +  A  +FD MP++DVVSWN
Sbjct: 127 GPALSPLVTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWN 186

Query: 363 SIIHAHSKD---HEALIYFEQMER------DGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           S+I A ++     E L  F++  R      DGV P+ +T  S+L ACA L  V  G  + 
Sbjct: 187 SLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVH 246

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
               E  G+   +  +  ++  Y + G +  A  ++
Sbjct: 247 RFAAES-GLDMDMAVWNSIIGFYAKCGRLQYARQLL 281


>gi|357450533|ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484591|gb|AES65794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 958

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 239/421 (56%), Gaps = 15/421 (3%)

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
            H ++ T     N  +S  L+ +Y     +D+A +VFD++  +    F W S+IS +   
Sbjct: 509 FHSMVLTRGFDWNTVVSCSLIDMYGWNRAVDDARRVFDELFVKDD-VFCWTSIISCFTRN 567

Query: 173 GEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             +++++  ++ M    GV PD +TF  +L ACA LGL+R G++VH   V  GFG +  V
Sbjct: 568 DMFKESLKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVV 627

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
            ++L+DMY KCG +  +R VF+R+ + K+ +S+ +ML  Y  +       D+ R      
Sbjct: 628 ESSLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLGVYCQNKEYQNVLDLVR----ER 683

Query: 291 FDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            D +  A   +L   S L     G +VH   +R+G   D+ I ++L+ +Y+K G +D AC
Sbjct: 684 GDLNFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVIIESALVDLYAKCGMVDFAC 743

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +F  M  +++++WNS++   +++    EAL  FE M ++G+ PD +TFV++L AC+H G
Sbjct: 744 TMFASMEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACSHAG 803

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            V  G ++F++M E YGI P VEHY CM++L GRAG IDEA   ++E  +      +W A
Sbjct: 804 LVDEGRKVFTLMGE-YGIKPVVEHYNCMIDLLGRAGFIDEA-ECLLENADCRYDKSLWAA 861

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL AC    +    E  A+K+ ELEPD   ++ LL  IY   GR DD   + +++ DRG+
Sbjct: 862 LLGACTKCSDYRTAERVARKMIELEPDFHLSYVLLNNIYREVGRWDDALEIRKLMEDRGV 921

Query: 525 E 525
           +
Sbjct: 922 K 922



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 168/364 (46%), Gaps = 43/364 (11%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF ++L  C  L  +  G ++H  +       N  + S LL +Y   G +  +
Sbjct: 585 GVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHS 644

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF+++S+       W +++  Y +  EY++ + L   + E G + + + F  VL+AC+
Sbjct: 645 RIVFERLSDEKN-NVSWTAMLGVYCQNKEYQNVLDL---VRERG-DLNFYAFGIVLRACS 699

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           GL  +  G++VH   VR G   D  + +ALVD+YAKCG +  A T+F  +  ++LI++NS
Sbjct: 700 GLAAVNHGKEVHCMYVRKGGSKDVIIESALVDLYAKCGMVDFACTMFASMEVRNLITWNS 759

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           M++G+  +G  VEA  +F  MI  G  PD +   ++L   ++A L+  G +V   +   G
Sbjct: 760 MVSGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACSHAGLVDEGRKVFTLMGEYG 819

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           ++  +   N +I +  + G +D+A                          E L+      
Sbjct: 820 IKPVVEHYNCMIDLLGRAGFIDEA--------------------------ECLLENADCR 853

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGL 441
            D  L     + +LL AC      +  ER+   M+E   + P     Y  + N+Y   G 
Sbjct: 854 YDKSL-----WAALLGACTKCSDYRTAERVARKMIE---LEPDFHLSYVLLNNIYREVGR 905

Query: 442 IDEA 445
            D+A
Sbjct: 906 WDDA 909


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 244/416 (58%), Gaps = 10/416 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G+++H     + +  N  I + L+ +Y     +      F+ M  +   +  W ++I+GY
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLIS--WTTIIAGY 428

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+   + DA+ L  +++ E ++ D      +L AC+GL   ++ +++H   ++ G   D 
Sbjct: 429 AQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA-DI 487

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            + NA+V++Y +   +  AR VF+ I +KD++S+ SM+T  +H+GL +EA ++F  +I  
Sbjct: 488 LIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIET 547

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
             +PD + + S+L   A  S L+ G ++HG+++R+G   +  IANSL+ +Y++ G ++ A
Sbjct: 548 NIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENA 607

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F+++ Q+D++ W S+I+A   H    +A+  F +M  + VLPDH+TF++LL AC+H 
Sbjct: 608 RNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHS 667

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G++ F +M  +Y + P  EHYAC+V+L  R+  ++EAY   V  M  E S  VW 
Sbjct: 668 GLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYH-FVRNMPIEPSAEVWC 726

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           ALL AC +H N  +GE AA+KL +L  +N  N+ L+   +   GR +DVE V  ++
Sbjct: 727 ALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIM 782



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 225/438 (51%), Gaps = 19/438 (4%)

Query: 47  SSYPKSSPTPLLTNQKAFPKTKLQALDSIIQD-LESSVQNGITVQTETFASLLETCYQLK 105
           S+ P +   P  +++    K   Q+L     D L ++ +  +    + ++  LE C   K
Sbjct: 4   STLPPNHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQ---QAYSQALELCASHK 60

Query: 106 AVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
           A+  G +LH   + T     +  + +K + +Y   G   +A +VFD+MS RT F   WN+
Sbjct: 61  ALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFT--WNA 118

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           +I      G Y +AI LY +M   GV  D FTFP VLKAC      R+G ++H  AV+ G
Sbjct: 119 MIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCG 178

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDR--IGNKDLISYNSMLTGYIHHGLLVEAFDI 282
           +G   FV NAL+ MYAKCGD+  AR +FD   +   D +S+NS+++ ++  G  +EA  +
Sbjct: 179 YGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSL 238

Query: 283 FRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           FR M   G + +     S L      + ++IG  +H  +L+     D+ ++N+LI +Y+ 
Sbjct: 239 FRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYAN 298

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSL 396
            G+++ A  +F  M  KD VSWN+++    ++    +A+ +F+ M+  G  PD ++ +++
Sbjct: 299 CGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNM 358

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID---EAYSMIVEKM 453
           ++A     ++  G  + +  + K+GI   +     ++++YG+   +     A+  + EK 
Sbjct: 359 IAASGRSANLLAGMEVHAYAI-KHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKD 417

Query: 454 EFEASPVVWGALLYACYL 471
               + ++ G     C+L
Sbjct: 418 LISWTTIIAGYAQNECHL 435



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 218/415 (52%), Gaps = 14/415 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+++   TF  +L+ C   K    G ++H +           + + L+ +YA  G +  A
Sbjct: 143 GVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGA 202

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD           WNS+IS +   GE  +A++L+ +M+E GVE + +TF   L+AC 
Sbjct: 203 RVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACE 262

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   I++G  +H   ++     D +V NAL+ MYA CG +  A  VF  +  KD +S+N+
Sbjct: 263 GPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNT 322

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NASLLRIGAQVHGWVLRR 321
           +L+G + + +  +A + F+ M  +G  PD V++ +++A    +A+LL  G +VH + ++ 
Sbjct: 323 LLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLL-AGMEVHAYAIKH 381

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G++ ++ I NSLI +Y K   +      F++MP+KD++SW +II  ++++    +AL   
Sbjct: 382 GIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLL 441

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +++ + +  D +   S+L AC+ L S K+ + +   ++ K G++  +   A +VN+YG 
Sbjct: 442 RKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVL-KGGLADILIQNA-IVNVYGE 499

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPD 491
             L+D  Y+  V +       V W +++  C  +G           L E  +EPD
Sbjct: 500 LALVD--YARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPD 552


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 236/440 (53%), Gaps = 9/440 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T TFA  L+ C  L+ V++G ++H  +          +++ L  +Y   G + +   +F+
Sbjct: 203 TFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFE 262

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            MS R   +  W SLI  Y  +G  E A+  + +M    V P++ TF  +  ACA L  +
Sbjct: 263 NMSERDVVS--WTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRL 320

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             GE++H +    G      V N+++ MY+ CG +  A  +F  +  +D+IS+++++ GY
Sbjct: 321 VWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGY 380

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDL 327
              G   EAF  F  M  +G  P   A++S+L+   N ++L  G QVH      G+E + 
Sbjct: 381 SQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNS 440

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + ++LI +YSK G + +A  +F+   + D+VS  ++I+    H K  EA+  FE+  + 
Sbjct: 441 TVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKV 500

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G  PD +TF+S+L+AC H G + +G   F++M EKY + P  EHY CMV+L  RAG + E
Sbjct: 501 GFSPDSVTFISVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSE 560

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  MI ++M ++   VVW  LL AC   G++  G  AA+++ EL+P        L  IY 
Sbjct: 561 AEKMI-DEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYS 619

Query: 505 NAGRLDDVERVERMLVDRGL 524
           + G L++   V + +  +G+
Sbjct: 620 STGNLEEAANVRKNMKAKGV 639



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 220/475 (46%), Gaps = 46/475 (9%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V   ++  T   + +L+ C Q   + +G  LH       L  +  + S LL +Y   G I
Sbjct: 94  VDPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKI 153

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           +++ +VF +M  R A    W ++I+G    G Y++ +  + +M       D FTF   LK
Sbjct: 154 EKSCRVFSEMPFRNAVT--WTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALK 211

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACAGL  ++ G+++H   +  GF    +V N+L  MY +CG++     +F+ +  +D++S
Sbjct: 212 ACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVS 271

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVL 319
           + S++  Y   G   +A + F  M  +   P+    +++  A ASL R+  G Q+H  V 
Sbjct: 272 WTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVF 331

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
             G+   L ++NS++ +YS  GKLD A  LF  M  +D++SW++II  +S+     EA  
Sbjct: 332 SLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFK 391

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           YF  M + G  P      SLLS   ++  ++ G R    +   +G+       + ++N+Y
Sbjct: 392 YFSWMRQSGPKPTDFALASLLSVSGNMAVLE-GGRQVHALAFCFGLEQNSTVRSTLINMY 450

Query: 437 GRAGLIDEAYSMIVE---------------------------------KMEFEASPVVWG 463
            + G I EA  +  E                                 K+ F    V + 
Sbjct: 451 SKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFI 510

Query: 464 ALLYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           ++L AC   G + +G       Q+ + + P  EH +  ++ +   AGRL + E++
Sbjct: 511 SVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEH-YGCMVDLLCRAGRLSEAEKM 564



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 186/374 (49%), Gaps = 29/374 (7%)

Query: 82  SVQNGITVQTETFAS--LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           SV+NG T+Q    AS  LLE     K VE  I++      + LR    I++  LR+    
Sbjct: 4   SVRNGGTIQRFCTASISLLE-----KPVEKTIQVVTFDTNSHLRSL--INAGNLRV---- 52

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME--EEGVEPDQFTF 197
                A QVFD+M +R   +  W ++I GY      ++A+ L+  M   +  V PD    
Sbjct: 53  -----ARQVFDKMPHRDIVS--WTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVV 105

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             VLKAC     I  GE +H  AV+       FV ++L+DMY + G I K+  VF  +  
Sbjct: 106 SVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPF 165

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQV 314
           ++ +++ +++TG +H G   E    F  M  +    D    +  L   + LR    G Q+
Sbjct: 166 RNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQI 225

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---D 371
           H  V+ RG +  + +ANSL  +Y++ G++     LF++M ++DVVSW S+I A+++   +
Sbjct: 226 HTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHE 285

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            +A+  F +M    V P+  TF ++ SACA L  +  GE+L    V   G++  +     
Sbjct: 286 EKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLH-CNVFSLGLNDSLSVSNS 344

Query: 432 MVNLYGRAGLIDEA 445
           M+ +Y   G +D A
Sbjct: 345 MMKMYSTCGKLDSA 358



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 20/280 (7%)

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM--ILNGFDPDPVAISS 300
           G++  AR VFD++ ++D++S+ +++ GY+      EA  +F  M  +     PD   +S 
Sbjct: 48  GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSV 107

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L     +S +  G  +H + ++  +   + + +SL+ +Y + GK++++C +F  MP ++
Sbjct: 108 VLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRN 167

Query: 358 VVSWNSII----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
            V+W +II    HA  +  E L YF +M     L D  TF   L ACA L  VK G+++ 
Sbjct: 168 AVTWTAIITGLVHA-GRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIH 226

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           + ++ + G    V     +  +Y   G + +   +  E M  E   V W +L+ A   + 
Sbjct: 227 THVIVR-GFDATVWVANSLATMYTECGEMRDGLCLF-ENMS-ERDVVSWTSLIVA---YN 280

Query: 474 NVCMGETAAQKLFELE----PDNEHNFELLIKIYGNAGRL 509
            +   E A +   ++     P NE  F  +     +  RL
Sbjct: 281 RIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRL 320


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 251/450 (55%), Gaps = 14/450 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           QN          +LL +  + +++  G++LH  I    L+    +S  L+ LY+   L  
Sbjct: 18  QNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPL 77

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + QVFD+   +++    W+S+IS +A+      A+  + +M  +GV PD   +P   KA
Sbjct: 78  FSLQVFDETPKKSSTT--WSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKA 135

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L    VG+ VH  AV+ G+  D FV ++LVDMYAKCG+I  AR +FD +  ++++S+
Sbjct: 136 CGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSW 195

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           + M+ GY      VEA  +F+  ++   D +    SS++   ++++ L +G  +HG  L+
Sbjct: 196 SGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLK 255

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEAL 375
              +    + ++LI +YSK G ++ A  +FD +P +++  WNS++     HAH++    L
Sbjct: 256 MSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGL 315

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+M   G+ P+ ++F+S+L AC+H G V+ G   FS+M   YGI P  EHYA +V+L
Sbjct: 316 --FEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDL 372

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG + EA S ++++M    +  VWGALL  C +H +  M    A ++ E++  +   
Sbjct: 373 LGRAGKLQEAVS-VIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGL 431

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             LL   Y  AGR ++  R+ +ML DRG++
Sbjct: 432 HVLLSNAYAAAGRYEEAARMRKMLRDRGVK 461


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 239/430 (55%), Gaps = 10/430 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S    C +L   + G ++H L     L  +      L  +YA  G ++ A  VF  + 
Sbjct: 304 FGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIE 363

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                A  WN++I+G+A +   +++ + + QM   G+ P+  T   +L AC+   ++  G
Sbjct: 364 KPDLVA--WNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIH 272
            +VH   V+ GF  D  V N+L+ MY+KC ++  A  VF+ IGNK D++S+N++LT  + 
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
                E   + + M  +   PD V ++++L ++  +    +G+Q+H ++++ G+  D+ +
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISV 541

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGV 386
           +N+LI +Y+K G L+ A  +FD +   D++SW+S+I  +++     EA   F  M   GV
Sbjct: 542 SNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGV 601

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV +L+AC+H+G V+ G +L+  M E Y ISP  EH +CMV+L  RAG +D A 
Sbjct: 602 KPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAE 661

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I  +M F    VVW  LL AC +HGN+ +G+ AA+ + +++P N     +L  I+ ++
Sbjct: 662 DFI-RQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASS 720

Query: 507 GRLDDVERVE 516
           G   D  R+ 
Sbjct: 721 GHWKDFARLR 730



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 224/435 (51%), Gaps = 28/435 (6%)

Query: 53  SPTPLLTN-----------QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETC 101
           SP PL  +           +K   +  L+A D I Q   SS      +++ T+  L+  C
Sbjct: 55  SPCPLTVHYPHDDKIISLCKKNLHREALKAFD-IFQKCSSS-----PLKSVTYTHLINAC 108

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
             L+++EHG K+HR + T   + +  + + +L +Y   G + EA  +FD M  +   +  
Sbjct: 109 SSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVS-- 166

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W S+ISGY+  GE ++AI LY QM   G  PD FTF  ++K+C+GL   ++  ++H   +
Sbjct: 167 WTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVL 226

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +  FG D    NAL+ MY K   +  A  VF RI  KDLIS+ SM+ G+   G  +EA  
Sbjct: 227 KSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALC 286

Query: 282 IFRGMILNG-FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            FR M+    + P+     S  +  S L     G Q+HG  ++ G+  DL    SL  +Y
Sbjct: 287 HFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMY 346

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFV 394
           +K G L+ A  +F H+ + D+V+WN+II      S   E+  +F QM   G++P+ +T +
Sbjct: 347 AKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVL 406

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           SLL AC+    +  G ++ S +V K G +  +     ++++Y +   +++A   + E + 
Sbjct: 407 SLLCACSEPVMLNHGIQVHSYIV-KMGFNLDIPVCNSLLSMYSKCSNLNDALQ-VFEDIG 464

Query: 455 FEASPVVWGALLYAC 469
            +A  V W  LL AC
Sbjct: 465 NKADIVSWNTLLTAC 479



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
             G+     T  SLL  C +   + HGI++H  I       +  + + LL +Y+    ++
Sbjct: 395 HTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLN 454

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A QVF+ + N+ A    WN+L++   +  +  + + L   M    ++PD  T   VL +
Sbjct: 455 DALQVFEDIGNK-ADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVS 513

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +    VG ++H   ++ G   D  V NAL++MY KCG +  AR +FD IGN D+IS+
Sbjct: 514 SGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISW 573

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           +S++ GY   G   EAF++FR M   G  P+ +    IL   S   IG    G  L R +
Sbjct: 574 SSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACS--HIGMVEEGLKLYRTM 631

Query: 324 EWDLCIA------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           + D  I+      + ++ + ++ G LD A      MP   DVV W +++ A
Sbjct: 632 QEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAA 682


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 218/379 (57%), Gaps = 6/379 (1%)

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+ +  +F + SL    A  G    A+A Y ++    +    F F  V KACA L  +R 
Sbjct: 67  SHPSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRA 126

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH  AV  GFG D FV  ALV +Y+KCG +  AR +FD I ++ ++++N+M++GY  
Sbjct: 127 GMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQ 186

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL   A +++R M + G  PD    VA  S  A A  L +G +V   ++   +E ++ +
Sbjct: 187 NGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVL 246

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +L+ +Y++ G +++A   FD + +++VV+W S+I     H    EA+  F+ M + G 
Sbjct: 247 GAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGP 306

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV++LSACAH G V  G   F+ M   YG+ PR EHY  MV++YGRAGL+D+A 
Sbjct: 307 PPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAM 366

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + +  E  P VW A+L AC +H N  +G   A++L  LEP+N  +  LL  IY  +
Sbjct: 367 QFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALS 426

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+++ VE+V   ++ R L+
Sbjct: 427 GKMNHVEKVRNTMIKRRLK 445



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 165/343 (48%), Gaps = 26/343 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F S+ + C  L A+  G+ +H          ++ + + L+ LY+  G +D A ++FD +
Sbjct: 110 AFTSVAKACADLSALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAI 169

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R+  A  WN++ISGY + G    AI +Y +M   G  PD  TF   L ACA  G + +
Sbjct: 170 RDRSVVA--WNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDL 227

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +V    V      +  +  ALV+MYA+CG + KAR  FD +  ++++++ SM+ GY  
Sbjct: 228 GHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGM 287

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIG-------AQVHGWVLRRG 322
           HG   EA  +F  M   G  P+    VA+ S  A+A L+  G         V+G V R  
Sbjct: 288 HGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPR-- 345

Query: 323 VEWDLCIANSLIVVYSKDGKLDQAC-WLFDHMP-QKDVVSWNSIIHAHSKDHEALIYFEQ 380
                C   S++ +Y + G LD A  ++ D +P +     W +++ A        +  E 
Sbjct: 346 -AEHYC---SMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEV 401

Query: 381 MERDGVL----PDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
            ER   L    P H   +S + A +  G +   E++ + M+++
Sbjct: 402 AERLIALEPENPSHRVLLSNIYALS--GKMNHVEKVRNTMIKR 442



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 11/163 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G    + TF + L  C Q  A++ G ++ RLI +  +  N  + + L+ +YA  GL+++A
Sbjct: 204 GEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKA 263

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + FD +  R      W S+I+GY   G   +A+ L+  M ++G  P+  TF  VL ACA
Sbjct: 264 REWFDMLQERNVVT--WTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACA 321

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNA-----LVDMYAKCG 243
             GL+  G     DA        G V  A     +VDMY + G
Sbjct: 322 HAGLVSDGR----DAFASMKSVYGLVPRAEHYCSMVDMYGRAG 360


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 237/438 (54%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  L+  C Q   +E G++LH          +  +   L+ LYA  G ++ A +VF  +
Sbjct: 169 TFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDV 228

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA--GLGLI 210
           S R      WN ++S Y      E+A  ++  M  + V  D+FTF  +L   +   L   
Sbjct: 229 SCRDLVM--WNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYY 286

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G++VH   +R  F  D  V +AL++MYAK  +I+ AR VFD +  ++++++N+M+ G+
Sbjct: 287 DFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGF 346

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDL 327
            +HG   E   + + M+  GF PD + ISSI+++   AS +    QVH + ++   +  L
Sbjct: 347 GNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFL 406

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            +ANSLI  YSK G +  A   F+   Q D+V+W S+I+A   H    ++   FE+M   
Sbjct: 407 SVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSY 466

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PD + F+ +LSACAH G V  G   F +M   Y I P  EHY C+V+L GR GLI+E
Sbjct: 467 GIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINE 526

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A+  I+  M  E      GA + +C LH N+ + + AA+KLF +EP+   N+ ++  I+ 
Sbjct: 527 AFE-ILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFA 585

Query: 505 NAGRLDDVERVERMLVDR 522
           +     DVER+ + + D+
Sbjct: 586 SQKHWYDVERIRKTMEDK 603



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 184/363 (50%), Gaps = 23/363 (6%)

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL----- 181
            + +++L +Y      ++A ++F+++  R   +  WN +I       +  ++  +     
Sbjct: 96  SLQNQILSVYLKCQEAEDAKKLFEELPVRNVVS--WNIMIRASVGRNDENESSGMRLCFS 153

Query: 182 YFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
           YF+ M  E + PD  TF  ++  C     I +G ++H   V+ GF  D FV  ALV +YA
Sbjct: 154 YFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYA 213

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG +  AR VF  +  +DL+ +N M++ Y+ + L  EAF +F  M L+  + D    SS
Sbjct: 214 KCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSS 273

Query: 301 ILANAS-----LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +L+  S         G QVH  VLR+  + D+ +A++LI +Y+K   +  A  +FD M  
Sbjct: 274 LLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSI 333

Query: 356 KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           ++VV+WN++I     H   +E +   ++M R+G LPD LT  S++S+C +  ++    ++
Sbjct: 334 RNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQV 393

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACY 470
            +  V K      +     +++ Y + G I  A+       E  + P  V W +L+YA  
Sbjct: 394 HAFAV-KLSCQDFLSVANSLISAYSKCGSITSAFKCF----ELTSQPDLVTWTSLIYAYA 448

Query: 471 LHG 473
            HG
Sbjct: 449 FHG 451



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 292 DPDPVAISS-----ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           DP+ V +       I A    L  G Q+H  +++ G    L + N ++ VY K  + + A
Sbjct: 55  DPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDA 114

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEA------LIYFEQMERDGVLPDHLTFVSLL 397
             LF+ +P ++VVSWN +I A    + ++E+        YF +M  + ++PDH+TF  L+
Sbjct: 115 KKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLI 174

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
             C     +++G +L    V K G          +V LY + G ++ A  +     +   
Sbjct: 175 CLCTQFNDIEMGVQLHCFTV-KVGFDLDCFVGCALVGLYAKCGFVENARRVFC---DVSC 230

Query: 458 SPVVWGALLYACYLHGNV 475
             +V   ++ +CY+  ++
Sbjct: 231 RDLVMWNVMVSCYVFNSL 248


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 257/477 (53%), Gaps = 27/477 (5%)

Query: 61  QKAFPKTKLQA-LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIP 118
           Q  FP+  ++  LD ++   ES           T +S+   C +L+ +  G +LH   I 
Sbjct: 246 QMGFPREAIRFFLDMVLSGFES--------DKFTLSSVFSACAELENLSLGKQLHSWAIR 297

Query: 119 TNLLRKNKGISSKLLRLYATF---GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-LGE 174
           + L+     +   L+ +YA     G +D+  +VFD+M + +  +  W +LI+GY +    
Sbjct: 298 SGLV---DDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS--WTALITGYMKNCNL 352

Query: 175 YEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
             +AI L+ +M  +G VEP+ FTF    KAC  L   RVG++V   A + G   +  V N
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVAN 412

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
           +++ M+ K   +  A+  F+ +  K+L+SYN+ L G   +    +AF +   +       
Sbjct: 413 SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGV 472

Query: 294 DPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
                +S+L   AN   +R G Q+H  V++ G+  +  + N+LI +YSK G +D A  +F
Sbjct: 473 SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532

Query: 351 DHMPQKDVVSWNSIIHAHSKDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
           + M  ++V+SW S+I   +K   A   L  F QM  +GV P+ +T+V++LSAC+H+G V 
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVS 592

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G R F+ M E + I P++EHYACMV+L  RAGL+ +A+  I   M F+A  +VW   L 
Sbjct: 593 EGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFI-NTMPFQADVLVWRTFLG 651

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           AC +H N  +G+ AA+K+ EL+P+    +  L  IY  AG+ ++   + R + +R L
Sbjct: 652 ACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNL 708



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 247/541 (45%), Gaps = 71/541 (13%)

Query: 48  SYPKSSPTPLLTNQKAFPKTKLQALDSII------QDLESSV-------QNGIT-VQTET 93
           S+P  SP  L    +     ++   D +I       DL  +V       ++GI  + + T
Sbjct: 7   SFP--SPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVT 64

Query: 94  FASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           F+SLL++C + +    G  +H RLI  + +  +  + + L+ LY+  G   +A  VF+ M
Sbjct: 65  FSSLLKSCIRARDFRLGKLVHARLIEFD-IEPDSVLYNSLISLYSKSGDSAKAEDVFETM 123

Query: 153 ---SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
                R   +  W+++++ Y   G   DAI ++ +  E G+ P+ + +  V++AC+    
Sbjct: 124 RRFGKRDVVS--WSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDF 181

Query: 210 IRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNSML 267
           + VG       ++ G F  D  V  +L+DM+ K       A  VFD++   +++++  M+
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVE 324
           T  +  G   EA   F  M+L+GF+ D   +SS+  A A L  L +G Q+H W +R G+ 
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLV 301

Query: 325 WDLCIANSLIVVYSK---DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD----HEALIY 377
            D  +  SL+ +Y+K   DG +D    +FD M    V+SW ++I  + K+     EA+  
Sbjct: 302 DD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINL 359

Query: 378 FEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLF---------------SVMVEKYG 421
           F +M   G V P+H TF S   AC +L   +VG+++                + ++  + 
Sbjct: 360 FSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFV 419

Query: 422 ISPRVE---------------HYACMVNLYGRAGLIDEAYSMIVEKMEFE--ASPVVWGA 464
            S R+E                Y   ++   R    ++A+ ++ E  E E   S   + +
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           LL      G++  GE    ++ +L    N+     LI +Y   G +D   RV   + +R 
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRN 539

Query: 524 L 524
           +
Sbjct: 540 V 540


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 163/491 (33%), Positives = 253/491 (51%), Gaps = 16/491 (3%)

Query: 44  TTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
             F+  P   P   L N          A    +    S  Q+G      TF  +L+ C +
Sbjct: 56  VVFAQTPH--PNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113

Query: 104 LKAVEH-GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           L    H G+ LH L+       +  + + L+ LY+  G + +A +VFD++  +   +  W
Sbjct: 114 LPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVS--W 171

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
            ++I GY E G + +A+ L+  + E G+ PD FT  R+L AC+ +G +  G  +      
Sbjct: 172 TAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRE 231

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   + FV  +LVDMYAKCG + +AR VFD +  KD++ +++++ GY  +G+  EA D+
Sbjct: 232 SGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDV 291

Query: 283 FRGMILNGFDPDPVAISSILANASLLRIGA-QVHGWV--LRRGVEW--DLCIANSLIVVY 337
           F  M      PD  A+  + +  S  R+GA ++  W   L  G E+  +  +  +LI  Y
Sbjct: 292 FFEMQRENVRPDCYAMVGVFSACS--RLGALELGNWARGLMDGDEFLSNPVLGTALIDFY 349

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFV 394
           +K G + QA  +F  M +KD V +N++I   +       A   F QM + G+ PD  TFV
Sbjct: 350 AKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFV 409

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
            LL  C H G V  G R FS M   + ++P +EHY CMV+L  RAGL+ EA  +I   M 
Sbjct: 410 GLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLI-RSMP 468

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            EA+ +VWGALL  C LH +  + E   ++L ELEP N  ++ LL  IY  + R D+ E+
Sbjct: 469 MEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEK 528

Query: 515 VERMLVDRGLE 525
           +   L  +G++
Sbjct: 529 IRSSLNQKGMQ 539



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 218/431 (50%), Gaps = 17/431 (3%)

Query: 95  ASLLETCYQ--LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            S L+ C+   LK++    + H L+    L ++  + + LLR    F     A  VF Q 
Sbjct: 2   GSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQT 61

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-LIR 211
            +   F +  N+LI G      + DA+++Y  M + G  PD FTFP VLKAC  L     
Sbjct: 62  PHPNIFLY--NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFH 119

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           VG  +H   ++ GF +D FV   LV +Y+K G +  AR VFD I  K+++S+ +++ GYI
Sbjct: 120 VGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYI 179

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
             G   EA  +FRG++  G  PD   +  IL   S    L  G  + G++   G   ++ 
Sbjct: 180 ESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVF 239

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           +A SL+ +Y+K G +++A  +FD M +KDVV W+++I  ++ +    EAL  F +M+R+ 
Sbjct: 240 VATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQREN 299

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD    V + SAC+ LG++++G     +M     +S  V   A +++ Y + G + +A
Sbjct: 300 VRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTA-LIDFYAKCGSVAQA 358

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNV--CMGETAAQKLFELEPDNEHNFELLIKIY 503
             +   K       VV+ A++    + G+V    G         ++PD  + F  L+   
Sbjct: 359 KEVF--KGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDG-NTFVGLLCGC 415

Query: 504 GNAGRLDDVER 514
            +AG +DD  R
Sbjct: 416 THAGLVDDGHR 426


>gi|302782902|ref|XP_002973224.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
 gi|300158977|gb|EFJ25598.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
          Length = 546

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 238/441 (53%), Gaps = 13/441 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     TF ++L  C  + A+E G KL++   +     +  + S  + +Y+ FG + E
Sbjct: 105 DGVKPNESTFVNILAACTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVE 164

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A   FD +  ++  +  WN+++  Y + G    AI+LY +M+  G EPD FT   +L AC
Sbjct: 165 AKAAFDHLREKSTGS--WNAIVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGAC 222

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +  GE++H    R G   DG   +A+V MYAKCG I  A T F ++ + +++ +N
Sbjct: 223 SSLGALEEGERIH---ARMGDKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWN 279

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +++ GY+      EA D++  M L G + D    SS+L   + A  L  G  VH  ++  
Sbjct: 280 ALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVSG 339

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G+E  + + N L+ +++K G L  A  +F  M  ++ VSWNS++ A   H +   A   F
Sbjct: 340 GLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGEGGGAFELF 399

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M  +G  P   TF S+L+ C+H G ++ G   F  MV+++GI+P  EHY C+++L GR
Sbjct: 400 KEMLLEGAEPHEQTFTSILNFCSHSGLLQDGFGYFFDMVDEFGIAPVDEHYRCVIDLLGR 459

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            G I  A  M+  +  F  S + W +LL AC  + NV +   A ++L  + P+N      
Sbjct: 460 TGHIAAAEKMV--EHAFPGSVIAWTSLLAACRTYRNVEIAARATEELMRVRPENPAPLVQ 517

Query: 499 LIKIYGNAGRLDDVERVERML 519
           L  +   AGR D VERV+RM+
Sbjct: 518 LANLCAEAGRWDAVERVKRMM 538



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 217/433 (50%), Gaps = 15/433 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI   + TF  +L  C  L  VE G K+H  +       +  +S+ +L +Y+    + +A
Sbjct: 5   GIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGDA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD +  +   +  W ++I+ +++LG    A+ L+++M+ +GV+P++ TF  +L AC 
Sbjct: 65  KKVFDSLRRKDVVS--WTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACT 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +  +  G+K++  A+  G+G D FV +  V MY++ G++V+A+  FD +  K   S+N+
Sbjct: 123 YMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNA 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           ++  YI HG + +A  +++ M ++G +PD      +L   S    L  G ++H    R G
Sbjct: 183 IVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHA---RMG 239

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
            + D    ++++ +Y+K G ++ A   F  M   +VV WN++I  + +     EAL  + 
Sbjct: 240 DKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYH 299

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M  +G+  D  TF S+L AC+    +  G  + + +V   G+   V     +VN++ + 
Sbjct: 300 AMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVSG-GLEVVVPLQNGLVNMFAKC 358

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG-ETAAQKLFELEPDNEHNFEL 498
           G +  A  M   +     + V W +++ A   HG      E   + L E    +E  F  
Sbjct: 359 GSLTLALEMF--RGMASRNTVSWNSMVTAFCQHGEGGGAFELFKEMLLEGAEPHEQTFTS 416

Query: 499 LIKIYGNAGRLDD 511
           ++    ++G L D
Sbjct: 417 ILNFCSHSGLLQD 429



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 179/350 (51%), Gaps = 17/350 (4%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+ EG+ P+  TF  +L AC+ LG +  G K+H   V  G+  D  V  A++ MY+KC  
Sbjct: 1   MDLEGIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEK 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  A+ VFD +  KD++S+ +++T +   G    A ++F  M L+G  P+     +ILA 
Sbjct: 61  LGDAKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAA 120

Query: 305 ASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            +    L  G +++   +  G   D+ + ++ + +YS+ G L +A   FDH+ +K   SW
Sbjct: 121 CTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSW 180

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N+I+ A   H    +A+  +++M+  G  PD  T V LL AC+ LG+++ GER+ + M +
Sbjct: 181 NAIVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHARMGD 240

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG---NV 475
           K    P     + +V +Y + G I+ A +    KM   ++ VVW AL+ A Y+ G     
Sbjct: 241 K----PDGLAGSAIVAMYAKCGGIEHAMTAFT-KMS-SSNVVVWNALI-AGYVQGEHWQE 293

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +    A  L  LE D  + F  ++     A  L +   V   +V  GLE
Sbjct: 294 ALDLYHAMNLEGLEADI-YTFSSVLGACSGAKDLSEGRAVHARIVSGGLE 342



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 171/346 (49%), Gaps = 23/346 (6%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS-SKLLRLYATFGLID 143
           +G    T T   LL  C  L A+E G ++H      +  K  G++ S ++ +YA  G I+
Sbjct: 206 HGAEPDTFTHVCLLGACSSLGALEEGERIH----ARMGDKPDGLAGSAIVAMYAKCGGIE 261

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A   F +MS+       WN+LI+GY +   +++A+ LY  M  EG+E D +TF  VL A
Sbjct: 262 HAMTAFTKMSSSNVVV--WNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGA 319

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+G   +  G  VH   V  G      + N LV+M+AKCG +  A  +F  + +++ +S+
Sbjct: 320 CSGAKDLSEGRAVHARIVSGGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSW 379

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           NSM+T +  HG    AF++F+ M+L G +P     +SIL   +++ LL+ G    G+   
Sbjct: 380 NSMVTAFCQHGEGGGAFELFKEMLLEGAEPHEQTFTSILNFCSHSGLLQDG---FGYFFD 436

Query: 321 RGVEWDLCIANS----LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
              E+ +   +     +I +  + G +  A  + +H     V++W S++ A   +     
Sbjct: 437 MVDEFGIAPVDEHYRCVIDLLGRTGHIAAAEKMVEHAFPGSVIAWTSLLAACRTYRNVEI 496

Query: 374 ALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVE 418
           A    E++ R  V P++    V L + CA  G     ER+  +M E
Sbjct: 497 AARATEELMR--VRPENPAPLVQLANLCAEAGRWDAVERVKRMMEE 540


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 240/449 (53%), Gaps = 13/449 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q G+     +F S+L +CY         ++ R+       ++  + + L+ ++     +
Sbjct: 533 LQGGVLPDALSFTSVLSSCY----CSQEAQVLRMCILESGYRSACLETALISMHGRCREL 588

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A  VF++M +    +  W +++S  AE  ++++   L+ +M+ EGV PD+FT    L 
Sbjct: 589 EQARSVFNEMDHGDVVS--WTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLD 646

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C     + +G+ +H      G   D  V NAL++MY+ CGD  +A + F+ +  +DL+S
Sbjct: 647 TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N M   Y   GL  EA  +FR M L G  PD +  S+ L     ++L+  G   H    
Sbjct: 707 WNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAA 766

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
             G++ D+ +A  L+ +Y+K GKLD+A  LF       VV  N+II A   H    EA+ 
Sbjct: 767 ESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVK 826

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M+++GV PD  T VS++SAC H G V+ G   F  M E +GISP +EHYAC V+L 
Sbjct: 827 MFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLL 886

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG ++ A   I+ KM FE + +VW +LL  C L G+  +GE  AQ++ EL+P N    
Sbjct: 887 GRAGQLEHA-EQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAH 945

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +L  IY   G+  D +   + ++D  ++
Sbjct: 946 VVLSNIYCATGKWKDADVDRKKMLDENVK 974



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 228/481 (47%), Gaps = 57/481 (11%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN---KGISSKLLRLYATFGLI 142
           GI     +F ++L  C   +A++ G K+H LI T   R++     +++ L+ +Y   G I
Sbjct: 432 GIDPNKVSFIAILNACSNSEALDFGRKIHSLILTR--RRDYVESSVATMLVSMYGKCGSI 489

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA  VF +M   +     WN ++  YA+    ++A     +M + GV PD  +F  VL 
Sbjct: 490 SEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLS 549

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           +C      +V     L++     G+    L  AL+ M+ +C ++ +AR+VF+ + + D++
Sbjct: 550 SCYCSQEAQVLRMCILES-----GYRSACLETALISMHGRCRELEQARSVFNEMDHGDVV 604

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWV 318
           S+ +M++    +    E  ++FR M L G  PD   +++ L     ++ L +G  +H  V
Sbjct: 605 SWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV 664

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEAL 375
              G+E D+ + N+L+ +YS  G   +A   F+ M  +D+VSWN +  A+++     EA+
Sbjct: 665 TEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAV 724

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE-RLFSVMVEKYGISPRVEHYACMVN 434
           + F QM+ +GV PD LTF + L+     GS  V + +LF  +  + G+   V     +V 
Sbjct: 725 LLFRQMQLEGVKPDKLTFSTTLNVSG--GSALVSDGKLFHALAAESGLDSDVSVATGLVK 782

Query: 435 LYGRAGLIDEAYSMIVEKMEF-------------------EASPVVWG------------ 463
           LY + G +DEA S+     ++                   EA  + W             
Sbjct: 783 LYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 464 --ALLYACYLHGNV---CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
             +++ AC   G V   C      ++ F + P  EH +   + + G AG+L+  E++ R 
Sbjct: 843 LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEH-YACFVDLLGRAGQLEHAEQIIRK 901

Query: 519 L 519
           +
Sbjct: 902 M 902



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 199/412 (48%), Gaps = 22/412 (5%)

Query: 74  SIIQDLES---SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS 130
           SII+ L S   +V+       + + +LL++C     +  G   H LI    L ++  + +
Sbjct: 5   SIIRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGN 64

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEG 189
            L+ +Y   G ++EAH +F +M  R   +  W +LIS  A+ G +  A AL+  M  E  
Sbjct: 65  CLINMYVRCGSLEEAHAIFSKMEERNVVS--WTALISANAQCGAFARAFALFRTMLLESS 122

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD------GFVLNALVDMYAKCG 243
             P+ +T   +L ACA    + +G  +H  A+ +  G +        V NA+++MYAKCG
Sbjct: 123 AAPNSYTLVAMLNACANSRDLAIGRSIH--AMIWELGLERASTTATLVGNAMINMYAKCG 180

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV-EAFDIFRGMILNGFDPDPVAISSIL 302
            +  A  VF  I  KD++S+ +M   Y        +A  IFR M+L    P+ +   + L
Sbjct: 181 SLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITAL 240

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK---DVV 359
              + LR G  +H  +    + +D   +N+LI +Y K G  + A  +F  M  +   D+V
Sbjct: 241 GACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLV 300

Query: 360 SWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SWN++I A     +  +A+  F ++  +G+ P+ +T +++L+A A  G      R F   
Sbjct: 301 SWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGR 360

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           + + G    V     ++++Y + G    A++ +  ++ ++   + W  +L A
Sbjct: 361 IWESGYLRDVVIGNAIISMYAKCGFFSAAWA-VFRRIRWKCDVISWNTMLGA 411



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 196/388 (50%), Gaps = 22/388 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF + L  C  L+    G  LH L+    L  +   S+ L+ +Y   G  + A+ VF  M
Sbjct: 235 TFITALGACTSLR---DGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAM 291

Query: 153 SNRTAFAF-PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-I 210
           ++R       WN++IS   E G + DA+A++ ++  EG+ P+  T   +L A A  G+  
Sbjct: 292 ASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDF 351

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTG 269
                 H      G+  D  + NA++ MYAKCG    A  VF RI  K D+IS+N+ML  
Sbjct: 352 GAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW- 325
                   +  + F  M+L G DP+ V+  +IL   +N+  L  G ++H  +L R  ++ 
Sbjct: 412 SEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYV 471

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHM--PQKDVVSWNSIIHAHSKD---HEALIYFEQ 380
           +  +A  L+ +Y K G + +A  +F  M  P + +V+WN ++ A++++    EA     +
Sbjct: 472 ESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALME 531

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M + GVLPD L+F S+LS+C      +V   L   ++E    S  +E    +++++GR  
Sbjct: 532 MLQGGVLPDALSFTSVLSSCYCSQEAQV---LRMCILESGYRSACLE--TALISMHGRCR 586

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYA 468
            +++A S +  +M+     V W A++ A
Sbjct: 587 ELEQARS-VFNEMD-HGDVVSWTAMVSA 612


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 239/424 (56%), Gaps = 11/424 (2%)

Query: 110 GIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           G ++H L I    L  +  +S   L +Y   G +  A  +F +M NR   A  WN++++ 
Sbjct: 30  GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVA--WNAVMTN 87

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
               G   + I  YF + E G  P+  +      ACAG   + +GE+ H   V+ GF  D
Sbjct: 88  AVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMD 147

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             VLN++VD Y KC    KAR VFD +G ++ +S+ SM+  Y  +G   EAF  + G   
Sbjct: 148 VSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARR 207

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G +P    +SS L   +    L +G  +H   +R  ++ ++ +A++L+ +Y K G ++ 
Sbjct: 208 SGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVED 267

Query: 346 ACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQMERDG-VLPDHLTFVSLLSACA 401
           A  +F   PQ+++V+WN++I  +AH  D + AL+ F+ M R G   P+++T V+++++C+
Sbjct: 268 AEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCS 327

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
             G  K G  LF  M E++GI PR EHYAC+V+L GRAG+ ++AY  +++ M    S  V
Sbjct: 328 RGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYE-VIQGMPMRPSISV 386

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WGALL AC +HG   +G  AA+KLFEL+P +  N  LL  ++ +AGR  +   + + + +
Sbjct: 387 WGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKN 446

Query: 522 RGLE 525
            G++
Sbjct: 447 VGIK 450



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 150/286 (52%), Gaps = 11/286 (3%)

Query: 189 GVEPDQFTFPRVLKACAGL-GLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIV 246
           G+ P+ FTFP   KA A       +G ++H  A+RFG+   D FV  A +DMY K G + 
Sbjct: 5   GLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLK 64

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---A 303
            AR +F  + N++++++N+++T  +  G  +E  + + G+   G  P+ V+  +     A
Sbjct: 65  LARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACA 124

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
            A  L +G Q HG+V++ G E D+ + NS++  Y K     +A  +FD M  ++ VSW S
Sbjct: 125 GAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCS 184

Query: 364 IIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           ++ A+++   + EA   +    R G  P      S L+ CA L  + +G  L +V V + 
Sbjct: 185 MVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAV-RS 243

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            I   +   + +V++YG+ G +++A  +  E    + + V W A++
Sbjct: 244 CIDANIFVASALVDMYGKCGCVEDAEQIFYETP--QRNLVTWNAMI 287



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 55/316 (17%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +S L TC  L  +  G  LH +   + +  N  ++S L+ +Y   G +++A Q+F +   
Sbjct: 218 SSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQ 277

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 213
           R      WN++I GYA +G+ ++A+ ++  M   G   P+  T   V+ +C+  GL + G
Sbjct: 278 RNLVT--WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDG 335

Query: 214 EKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNKDLIS-YNSMLTGY 270
            ++  + +R  FG +        +VD+  + G   +A  V   +  +  IS + ++L   
Sbjct: 336 YEL-FETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGAC 394

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDP------VAISSILANASLLRIGAQVHGWVLRRGVE 324
             HG      ++ R      F+ DP      V +S++ A+A        +   +   G++
Sbjct: 395 KMHG----KTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 450

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFE---- 379
            D                           P    V+W +++H   +KD +  +Y E    
Sbjct: 451 KD---------------------------PGCSWVTWKNVVHVFRAKDTKHEMYNEIQAL 483

Query: 380 ------QMERDGVLPD 389
                 QM+  G +PD
Sbjct: 484 LSKLRKQMQAAGYMPD 499


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 241/448 (53%), Gaps = 10/448 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S + +G +V   TF S L  C+     E G  LH L+  + L  N+ I + L+ +Y  
Sbjct: 333 LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 392

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G + E+ +V  QM  R   A  WN+LI GYAE  + + A+A +  M  EGV  +  T  
Sbjct: 393 IGEMSESRRVLLQMPRRDVVA--WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVV 450

Query: 199 RVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
            VL AC   G L+  G+ +H   V  GF  D  V N+L+ MYAKCGD+  ++ +F+ + N
Sbjct: 451 SVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN 510

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQV 314
           +++I++N+ML    HHG   E   +   M   G   D  + S  L+ A+ L +   G Q+
Sbjct: 511 RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQL 570

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           HG  ++ G E D  I N+   +YSK G++ +   +      + + SWN +I A   H   
Sbjct: 571 HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYF 630

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            E    F +M   G+ P H+TFVSLL+AC+H G V  G   + ++   +G+ P +EH  C
Sbjct: 631 EEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCIC 690

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +++L GR+G + EA + I  KM  + + +VW +LL +C +HGN+  G  AA+ L +LEP+
Sbjct: 691 VIDLLGRSGRLAEAETFI-SKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 749

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERML 519
           ++  + L   ++   GR +DVE V + +
Sbjct: 750 DDSVYVLSSNMFATTGRWEDVENVRKQM 777



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 201/388 (51%), Gaps = 12/388 (3%)

Query: 86  GITVQTETFASLLETCYQLKAV-EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           GI   +   ASL+  C +  ++   G+++H  +  + L  +  +S+ +L LY  +GL+  
Sbjct: 36  GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 95

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           + +VF++M +R   +  W SL+ GY++ GE E+ I +Y  M  EGV  ++ +   V+ +C
Sbjct: 96  SRKVFEEMPDRNVVS--WTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC 153

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L    +G ++    V+ G      V N+L+ M    G++  A  +FD++  +D IS+N
Sbjct: 154 GLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWN 213

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRR 321
           S+   Y  +G + E+F IF  M     + +   +S   S+L +    + G  +HG V++ 
Sbjct: 214 SIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM 273

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G +  +C+ N+L+ +Y+  G+  +A  +F  MP KD++SWNS++ +   D    +AL   
Sbjct: 274 GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 333

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M   G   +++TF S L+AC      + G  L  ++V       ++   A +V++YG+
Sbjct: 334 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA-LVSMYGK 392

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G + E+  ++++    +   V W AL+
Sbjct: 393 IGEMSESRRVLLQMPRRDV--VAWNALI 418



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 198/396 (50%), Gaps = 12/396 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     + + ++ +C  LK    G ++   +  + L     + + L+ +  + G +D A
Sbjct: 138 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 197

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           + +FDQMS R   +  WNS+ + YA+ G  E++  ++  M     E +  T   +L    
Sbjct: 198 NYIFDQMSERDTIS--WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 255

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +   + G  +H   V+ GF     V N L+ MYA  G  V+A  VF ++  KDLIS+NS
Sbjct: 256 HVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNS 315

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRG 322
           ++  +++ G  ++A  +   MI +G   + V  +S LA          G  +HG V+  G
Sbjct: 316 LMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSG 375

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFE 379
           + ++  I N+L+ +Y K G++ ++  +   MP++DVV+WN++I  +++D +   AL  F+
Sbjct: 376 LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQ 435

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGS-VKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            M  +GV  +++T VS+LSAC   G  ++ G+ L + +V   G          ++ +Y +
Sbjct: 436 TMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAK 494

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            G  D + S  +       + + W A+L A   HG+
Sbjct: 495 CG--DLSSSQDLFNGLDNRNIITWNAMLAANAHHGH 528



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 165/312 (52%), Gaps = 10/312 (3%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDA 220
           WN+++SG   +G Y + +  + +M + G++P  F    ++ AC   G + R G +VH   
Sbjct: 9   WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFV 68

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
            + G   D +V  A++ +Y   G +  +R VF+ + +++++S+ S++ GY   G   E  
Sbjct: 69  AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVI 128

Query: 281 DIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           DI++GM   G   +  ++S ++++  LL+   +G Q+ G V++ G+E  L + NSLI + 
Sbjct: 129 DIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISML 188

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
              G +D A ++FD M ++D +SWNSI  A++++    E+   F  M R     +  T  
Sbjct: 189 GSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVS 248

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           +LLS   H+   K G  +  ++V K G    V     ++ +Y  AG   EA +++ ++M 
Sbjct: 249 TLLSVLGHVDHQKWGRGIHGLVV-KMGFDSVVCVCNTLLRMYAGAGRSVEA-NLVFKQMP 306

Query: 455 FEASPVVWGALL 466
            +   + W +L+
Sbjct: 307 TK-DLISWNSLM 317



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 27/318 (8%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           D  +   ++    G++    T  S+L  C      +E G  LH  I +     ++ + + 
Sbjct: 428 DKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNS 487

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA  G +  +  +F+ + NR      WN++++  A  G  E+ + L  +M   GV 
Sbjct: 488 LITMYAKCGDLSSSQDLFNGLDNRNIIT--WNAMLAANAHHGHGEEVLKLVSKMRSFGVS 545

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            DQF+F   L A A L ++  G+++H  AV+ GF  D F+ NA  DMY+KCG+I +   +
Sbjct: 546 LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 605

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
                N+ L S+N +++    HG   E    F  M+  G  P  V   S+L   S     
Sbjct: 606 LPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS----- 660

Query: 312 AQVHGWVLRRGVEWDLCIANS------------LIVVYSKDGKLDQACWLFDHMPQK--D 357
              HG ++ +G+ +   IA              +I +  + G+L +A      MP K  D
Sbjct: 661 ---HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPND 717

Query: 358 VVSWNSIIHAHSKDHEAL 375
           +V W S++ A  K H  L
Sbjct: 718 LV-WRSLL-ASCKIHGNL 733



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 121/225 (53%), Gaps = 10/225 (4%)

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NASLLRIGAQ 313
           ++ +S+N+M++G +  GL +E  + FR M   G  P    I+S++     + S+ R G Q
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ 63

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---K 370
           VHG+V + G+  D+ ++ +++ +Y   G +  +  +F+ MP ++VVSW S++  +S   +
Sbjct: 64  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 123

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             E +  ++ M  +GV  +  +   ++S+C  L    +G ++   +V K G+  ++    
Sbjct: 124 PEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVV-KSGLESKLAVEN 182

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
            ++++ G  G +D A + I ++M  E   + W ++  A   +G++
Sbjct: 183 SLISMLGSMGNVDYA-NYIFDQMS-ERDTISWNSIAAAYAQNGHI 225


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 231/439 (52%), Gaps = 49/439 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ ++L+ C     V  G+++H  +  + L  +  I S  +R+YA+FG + EA ++ D  
Sbjct: 139 TYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK 198

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 A  WN++I GY   GE E A  L+  M      PD+                  
Sbjct: 199 GGEVD-AVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMIS-------------- 237

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
                               NA++  +++CG +  AR  FD +  +D IS+++M+ GYI 
Sbjct: 238 ------------------TWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQ 279

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G  +EA +IF  M      P    + S+L   AN   L  G  +H +  R  ++ D  +
Sbjct: 280 EGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVL 339

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             SL+ +Y+K G++D A  +F+ M  K+V SWN++I     H +  +A+  F +M+   +
Sbjct: 340 GTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---I 396

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV +L+ACAH G V+ G  +F+ M ++YG+ P++EHY C+V+L GRAGL+ EA 
Sbjct: 397 NPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA- 455

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             +V  +  E +P VWGALL AC  HGNV +GE   + L ELEP N   + LL  IY  A
Sbjct: 456 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 515

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++V  V +++ +RG++
Sbjct: 516 GRWEEVGEVRKLMKERGIK 534


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 252/475 (53%), Gaps = 20/475 (4%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLET--CYQLKAVEHGIKLHRL-I 117
           Q A P   L A  ++++        G+     TF S  +   C   +    G ++H L +
Sbjct: 88  QHARPLAALSAFAAMLR-------VGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALAL 140

Query: 118 PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177
               L  +  +S   + +Y   G +  A ++F++M NR   A  WN++++     G   +
Sbjct: 141 RFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIA--WNAVMTNAVIDGRPLE 198

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
               YF + E G  P+  +      ACAG   + +GE+ H   V  GF  D  V NA+VD
Sbjct: 199 TFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVD 258

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
            Y KC    KAR VFD +  ++ +S+ SM+  Y  HG   +A  ++ G    G +P    
Sbjct: 259 FYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFM 318

Query: 298 ISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           +SS+L   +    L  G  +H   +R  ++ ++ +A++L+ +Y K G ++ A  +F  MP
Sbjct: 319 VSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMP 378

Query: 355 QKDVVSWNSII--HAHSKDHE-ALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGE 410
           ++++V+WN++I  +AH  D + AL  F+ M R  G  P+H+T V++++AC+  G  K G 
Sbjct: 379 ERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGY 438

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
            LF  M E++G+ PR EHYAC+V+L GRAG+ + AY  I+++M    S  VWGALL AC 
Sbjct: 439 ELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYE-IIQRMPMRPSISVWGALLGACK 497

Query: 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +HG   +G  A++KLFEL+P +  N  LL  +  +AGR  +   V + + + G++
Sbjct: 498 MHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIK 552


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 246/452 (54%), Gaps = 29/452 (6%)

Query: 96  SLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           SL ETC  +  ++  H   L    P         +  K+L+L ++F  ++ A +VFD + 
Sbjct: 44  SLAETCSDMSQLKQLHAFTLRTTYPEE--PATLFLYGKILQLSSSFSDVNYAFRVFDSIE 101

Query: 154 NRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIR 211
           N ++F   WN+LI   A ++   E+A  LY +M E G   PD+ TFP VLKACA +    
Sbjct: 102 NHSSFM--WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 159

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G++VH   V+ GFG D +V N L+ +Y  CG +  AR VFD +  + L+S+NSM+   +
Sbjct: 160 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 219

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR---GVEW 325
             G    A  +FR M    F+PD   + S+L   A    L +G   H ++LR+    V  
Sbjct: 220 RFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 278

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQM- 381
           D+ + NSLI +Y K G L  A  +F  M ++D+ SWN++I     H +  EA+ +F++M 
Sbjct: 279 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 338

Query: 382 -ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
            +R+ V P+ +TFV LL AC H G V  G + F +MV  Y I P +EHY C+V+L  RAG
Sbjct: 339 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 398

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHN---- 495
            I EA  M++  M  +   V+W +LL AC   G +V + E  A+ +   + DNE +    
Sbjct: 399 YITEAIDMVM-SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 457

Query: 496 ---FELLIKIYGNAGRLDDVERVERMLVDRGL 524
              + LL ++Y +A R +DV  V +++ + G+
Sbjct: 458 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 489



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 23/307 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  +     G ++H  I  +    +  +++ L+ LY + G +D A +VFD+M
Sbjct: 144 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 203

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R+  +  WNS+I      GEY+ A+ L+ +M +   EPD +T   VL ACAGLG + +
Sbjct: 204 PERSLVS--WNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 260

Query: 213 GEKVH---LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           G   H   L         D  V N+L++MY KCG +  A  VF  +  +DL S+N+M+ G
Sbjct: 261 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 320

Query: 270 YIHHGLLVEAFDIFRGMI--LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           +  HG   EA + F  M+       P+ V    +L   +    +  G Q    ++R    
Sbjct: 321 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---- 376

Query: 325 WDLCIANSL------IVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKDHEALIY 377
            D CI  +L      + + ++ G + +A  +   MP K D V W S++ A  K   ++  
Sbjct: 377 -DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 435

Query: 378 FEQMERD 384
            E++ R+
Sbjct: 436 SEEIARN 442


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 246/452 (54%), Gaps = 29/452 (6%)

Query: 96  SLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           SL ETC  +  ++  H   L    P         +  K+L+L ++F  ++ A +VFD + 
Sbjct: 53  SLAETCSDMSQLKQLHAFTLRTTYPEE--PATLFLYGKILQLSSSFSDVNYAFRVFDSIE 110

Query: 154 NRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIR 211
           N ++F   WN+LI   A ++   E+A  LY +M E G   PD+ TFP VLKACA +    
Sbjct: 111 NHSSFM--WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 168

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G++VH   V+ GFG D +V N L+ +Y  CG +  AR VFD +  + L+S+NSM+   +
Sbjct: 169 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 228

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR---GVEW 325
             G    A  +FR M    F+PD   + S+L   A    L +G   H ++LR+    V  
Sbjct: 229 RFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 287

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQM- 381
           D+ + NSLI +Y K G L  A  +F  M ++D+ SWN++I     H +  EA+ +F++M 
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347

Query: 382 -ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
            +R+ V P+ +TFV LL AC H G V  G + F +MV  Y I P +EHY C+V+L  RAG
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 407

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHN---- 495
            I EA  M++  M  +   V+W +LL AC   G +V + E  A+ +   + DNE +    
Sbjct: 408 YITEAIDMVM-SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 466

Query: 496 ---FELLIKIYGNAGRLDDVERVERMLVDRGL 524
              + LL ++Y +A R +DV  V +++ + G+
Sbjct: 467 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 498



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 23/307 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  +     G ++H  I  +    +  +++ L+ LY + G +D A +VFD+M
Sbjct: 153 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 212

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R+  +  WNS+I      GEY+ A+ L+ +M +   EPD +T   VL ACAGLG + +
Sbjct: 213 PERSLVS--WNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 269

Query: 213 GEKVH---LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           G   H   L         D  V N+L++MY KCG +  A  VF  +  +DL S+N+M+ G
Sbjct: 270 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 329

Query: 270 YIHHGLLVEAFDIFRGMI--LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           +  HG   EA + F  M+       P+ V    +L   +    +  G Q    ++R    
Sbjct: 330 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---- 385

Query: 325 WDLCIANSL------IVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKDHEALIY 377
            D CI  +L      + + ++ G + +A  +   MP K D V W S++ A  K   ++  
Sbjct: 386 -DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 444

Query: 378 FEQMERD 384
            E++ R+
Sbjct: 445 SEEIARN 451


>gi|115452179|ref|NP_001049690.1| Os03g0271300 [Oryza sativa Japonica Group]
 gi|113548161|dbj|BAF11604.1| Os03g0271300, partial [Oryza sativa Japonica Group]
          Length = 484

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/439 (36%), Positives = 243/439 (55%), Gaps = 42/439 (9%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           + L  C  L  V  G  +H L+ T   L  +   ++ LL +Y+  GL+  A +VFD+M++
Sbjct: 67  TALRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMAS 126

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           R      WN+L++ YA  G  E A+AL  +M   G+ PD  T+  V+             
Sbjct: 127 R-GDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVS------------ 173

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
                    GF   G  L A        GD+V A  + D     D++++ S ++G + + 
Sbjct: 174 ---------GFALAGDDLMA--------GDLVGA--MKDDGFQPDVVTWTSRVSGSVLNF 214

Query: 275 LLVEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
               A  +FR M++ G    P    IS+IL   AN + ++ G +VHG+ +  GVE +L +
Sbjct: 215 QYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTV 274

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
           +++L+ +Y+K G + +A  LFD MPQ+  V+WNS+I   +      EA+  F++M RDG 
Sbjct: 275 SSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGA 334

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PDHLTF ++L+AC++ G V+VG+ L+  M  +YG+ PR+EHYACMV+L GRAG +DEAY
Sbjct: 335 KPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAY 394

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I   M  E    VWGALL AC  HGN+ + E AA +L  +EPDN  +  LL     NA
Sbjct: 395 GFI-RAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASCLLLSSALANA 453

Query: 507 GRLDDVERVERMLVDRGLE 525
           G+ DDV +++R++  R L+
Sbjct: 454 GKQDDVFKIKRLVKRRRLK 472



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 169/415 (40%), Gaps = 87/415 (20%)

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF-----QMEEEG-VEPDQFTFPRVLKA 203
           DQ     A    W   ++  +  G + D + L+F     Q    G V+P     P  L+A
Sbjct: 12  DQRQMCPAKTSSWMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRA 71

Query: 204 CAGLGLIRVGEKVH-LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLI 261
           CA L  +  G  +H L   R     D     AL+DMY+KCG +  AR VFD + ++ D +
Sbjct: 72  CAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPV 131

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
            +N++L  Y  HGL   A  +   M   G  PD V  + +++  +L              
Sbjct: 132 VWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFAL-------------- 177

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYF 378
               D  +A  L+     DG             Q DVV+W S +     + +   A   F
Sbjct: 178 --AGDDLMAGDLVGAMKDDGF------------QPDVVTWTSRVSGSVLNFQYGRARALF 223

Query: 379 EQMERDG--VLPDHLTFVSLLSACAHLGSVKVGERL--FSVMVEKYGISPRVEHYACMVN 434
             M   G  VLP   T  ++L A A++  VK G+ +  +SV+    G+   +   + +V+
Sbjct: 224 RAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSVVA---GVEQELTVSSALVD 280

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWG------------------------------- 463
           +Y + GL+ EA  +  +KM  + S V W                                
Sbjct: 281 MYAKCGLVLEARRLF-DKMP-QRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDH 338

Query: 464 ----ALLYACYLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
               A+L AC   G V +G+    A Q  + +EP  EH +  ++ + G AGRLD+
Sbjct: 339 LTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEH-YACMVHLLGRAGRLDE 392



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 12/223 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            + T +++L     +  V+HG ++H       + +   +SS L+ +YA  GL+ EA ++F
Sbjct: 236 SSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLF 295

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+M  R+     WNS+I G A  G  ++A+ L+ +M  +G +PD  TF  VL AC+  G+
Sbjct: 296 DKMPQRSTVT--WNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGM 353

Query: 210 IRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSM 266
           + VG K+   A++  +G +  +     +V +  + G + +A      +    D   + ++
Sbjct: 354 VEVG-KILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 412

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVA----ISSILANA 305
           L     HG  +E  ++    +L   +PD  A    +SS LANA
Sbjct: 413 LGACRSHG-NIELAELAASRLL-AVEPDNAASCLLLSSALANA 453


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 245/461 (53%), Gaps = 15/461 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +  +  ++   S  + G+        S L +C  L  +  G + H       L  +  +S
Sbjct: 183 KCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVS 242

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG-EYEDAIALYFQMEEE 188
           + LL LYA    + E  +VF  M  R   +  WN++I   A+ G    +AI ++ +M   
Sbjct: 243 NTLLALYAETSRLAECQKVFSWMLERDQVS--WNTVIGALADSGASVSEAIEVFLEMMRA 300

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G  P++ TF  +L   + L   ++  ++H   +++    D  + NAL+  Y K G++   
Sbjct: 301 GWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENC 360

Query: 249 RTVFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
             +F R+  + D +S+NSM++GYIH+ LL +A D+   M+  G   D    +++L   A 
Sbjct: 361 EEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACAT 420

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            + L  G +VH   +R  +E D+ I ++L+ +YSK G++D A   F+ MP +++ SWNS+
Sbjct: 421 VATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSM 480

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H     AL  F +M+  G LPDH+TFV +LSAC+H+G V  G   F  M E YG
Sbjct: 481 ISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYG 540

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN---VCMG 478
           + PRVEHY+CMV+L GRAG +D+  + I  KM  + + ++W  +L AC   GN     +G
Sbjct: 541 LVPRVEHYSCMVDLLGRAGELDKIENFI-NKMPIKPNILIWRTVLGAC-CRGNGRKTELG 598

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
             AA+ LF ++P N  N+ LL  +Y + G+ +D+ R  R +
Sbjct: 599 RRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAM 639



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 189/354 (53%), Gaps = 14/354 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ +Y   G    A ++FD+M +R      W  LISGY + G  EDA  +  +M  
Sbjct: 37  LCNTLINVYVRIGDCVSARKLFDEMPDRNGVT--WACLISGYTQNGMPEDACGVLKEMIF 94

Query: 188 EGVEPDQFTFPRVLKACAGLGLI-RVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDI 245
           EG  P++F F   ++AC    L  R G +VH  A+R G       + N L++MYAKCGDI
Sbjct: 95  EGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDI 154

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             AR+VF  + +KD +S+NSM+TG   +    +A   +  M   G  P   A+ S L++ 
Sbjct: 155 DHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSC 214

Query: 306 SLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           + L    +G Q HG  ++ G++ D+ ++N+L+ +Y++  +L +   +F  M ++D VSWN
Sbjct: 215 ASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWN 274

Query: 363 SIIHAHSKD----HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           ++I A +       EA+  F +M R G  P+ +TF++LL+  + L + K+  ++ ++++ 
Sbjct: 275 TVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALIL- 333

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           KY +         ++  YG++G ++     I  +M      V W +++   Y+H
Sbjct: 334 KYNVKDDNAIENALLACYGKSGEMENCEE-IFSRMSERRDEVSWNSMISG-YIH 385



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 220/467 (47%), Gaps = 50/467 (10%)

Query: 93  TFASLLETCYQ-LKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
            F S +  C + +     G ++H   I T L      + + L+ +YA  G ID A  VF 
Sbjct: 103 AFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFG 162

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M ++ + +  WNS+I+G  +   +EDA+  Y  M + G+ P  F     L +CA LG I
Sbjct: 163 LMVDKDSVS--WNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCI 220

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G++ H + ++ G   D  V N L+ +YA+   + + + VF  +  +D +S+N+++   
Sbjct: 221 LLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGAL 280

Query: 271 IHHGLLV-EAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWD 326
              G  V EA ++F  M+  G+ P+ V   ++LA  S L   ++  Q+H  +L+  V+ D
Sbjct: 281 ADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDD 340

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSKDH---EALIYFEQME 382
             I N+L+  Y K G+++    +F  M + +D VSWNS+I  +  +    +A+     M 
Sbjct: 341 NAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMM 400

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLF---------------SVMVEKYGISPRVE 427
           + G   D  TF ++LSACA + +++ G  +                S +V+ Y    R++
Sbjct: 401 QRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRID 460

Query: 428 H---------------YACMVNLYGRAGLIDEAYSMIVEKMEFEA---SPVVWGALLYAC 469
           +               +  M++ Y R G  D A  +   +M+        + +  +L AC
Sbjct: 461 YASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFT-RMKLSGQLPDHITFVGVLSAC 519

Query: 470 YLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
              G V  G     +  +++ L P  EH +  ++ + G AG LD +E
Sbjct: 520 SHIGLVDEGFEYFKSMTEVYGLVPRVEH-YSCMVDLLGRAGELDKIE 565



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 144/260 (55%), Gaps = 13/260 (5%)

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           HL+ ++ GF  D F+ N L+++Y + GD V AR +FD + +++ +++  +++GY  +G+ 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 277 VEAFDIFRGMILNGFDPDPVAISSIL--ANASLL--RIGAQVHGWVLRRGV-EWDLCIAN 331
            +A  + + MI  GF P+  A  S +     S+L  R G QVHG+ +R G+ +  + + N
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
            LI +Y+K G +D A  +F  M  KD VSWNS+I    ++    +A+  +  M + G++P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--- 445
            +   +S LS+CA LG + +G++     + K G+   V     ++ LY     + E    
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGI-KLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 446 YSMIVEKMEFEASPVVWGAL 465
           +S ++E+ +   + V+ GAL
Sbjct: 262 FSWMLERDQVSWNTVI-GAL 280


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 12/465 (2%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISS 130
            D  +Q L   V  G+     TFAS L  C +L+ ++ G ++H  +I  + L  N  ++S
Sbjct: 254 FDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVAS 313

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-G 189
            L+ +YAT   + +A QVFD + +       WN++I GYA+ G  E+A+ L+ +ME E G
Sbjct: 314 ALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAG 373

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P + T   VL ACA        E VH   V+ G   + FV NAL+DMYA+ G    AR
Sbjct: 374 FVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 433

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPDPVAISSILANAS 306
            +F  +   D++S+N+++TG +  G + +AF + R M      G  P+ + + ++L   +
Sbjct: 434 RIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCA 493

Query: 307 LLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +L     G ++HG+ +R  ++ D+ + ++L+ +Y+K G L  +  +FD +P+++ ++WN 
Sbjct: 494 ILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNV 553

Query: 364 IIHA---HSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +I A   H    EA + F++M   G   P+ +TF++ L+AC+H G V  G +LF  M   
Sbjct: 554 LIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERD 613

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +G+ P  +  AC+V++ GRAG +DEAY+M+      E     W  +L AC LH NV +GE
Sbjct: 614 HGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGE 673

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A ++L ELEP+   ++ LL  IY  AG+      V   +  RG+
Sbjct: 674 IAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGV 718



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 222/468 (47%), Gaps = 45/468 (9%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHR-----LIPTNLLRKNKGIS-SKLLRLYAT 138
            G  + + T  S+L     L A    ++L R      +   LL  ++  + + LL +YA 
Sbjct: 158 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 217

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            GL+ +A ++F   +        WN+++S   + G +++A+   + M   GV PD  TF 
Sbjct: 218 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 277

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRI-- 255
             L AC+ L L+ VG ++H   ++      + FV +ALVDMYA    + KAR VFD +  
Sbjct: 278 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 337

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIG 311
             K L  +N+M+ GY   G+  EA  +F  M    GF P    ++S+L   A +      
Sbjct: 338 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 397

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----H 366
             VHG+V++RG+  +  + N+L+ +Y++ GK D A  +F  +   DVVSWN++I      
Sbjct: 398 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 457

Query: 367 AHSKDHEALIY-FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            H  D   L    +Q+E  GV+P+ +T ++LL  CA L +   G+ +    V ++ +   
Sbjct: 458 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV-RHALDTD 516

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           V   + +V++Y + G +  A S  V       + + W  L+ A  +HG    GE  A  L
Sbjct: 517 VAVGSALVDMYAKCGCL--ALSRAVFDRLPRRNTITWNVLIMAYGMHG--LGGE--ATVL 570

Query: 486 F-------ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           F       E  P NE  F   +    ++G           +VDRGL+ 
Sbjct: 571 FDRMTASGEARP-NEVTFMAALAACSHSG-----------MVDRGLQL 606



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 197/413 (47%), Gaps = 25/413 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           A+ L      +A+ H   L R +   L R +  +++ LL  YA  G +  A +VF  +S+
Sbjct: 69  AAALRDARSARAI-HAAALRRGL---LHRPSPAVANALLTAYARCGRLAAALEVFGSISD 124

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC----AGLGLI 210
               A  +NSLIS       ++ A+A    M   G     FT   VL+A     A    +
Sbjct: 125 SAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAV 184

Query: 211 RVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSM 266
           R+G + H  A++ G   G   F  NAL+ MYA+ G +  A+ +F     G  D++++N+M
Sbjct: 185 RLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTM 244

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG- 322
           ++  +  G+  EA      M+  G  PD V  +S L   S   LL +G ++H +V++   
Sbjct: 245 VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDE 304

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSK---DHEALIY 377
           +  +  +A++L+ +Y+   ++ +A  +FD +P   K +  WN++I  +++   D EAL  
Sbjct: 305 LAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 364

Query: 378 FEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           F +ME + G +P   T  S+L ACA   +    E +   +V++     R    A M ++Y
Sbjct: 365 FARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM-DMY 423

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            R G  D A  +    M      V W  L+  C + G+V      A+++ +LE
Sbjct: 424 ARLGKTDVARRIFA--MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 474


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 12/465 (2%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISS 130
            D  +Q L   V  G+     TFAS L  C +L+ ++ G ++H  +I  + L  N  ++S
Sbjct: 252 FDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVAS 311

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-G 189
            L+ +YAT   + +A QVFD + +       WN++I GYA+ G  E+A+ L+ +ME E G
Sbjct: 312 ALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAG 371

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P + T   VL ACA        E VH   V+ G   + FV NAL+DMYA+ G    AR
Sbjct: 372 FVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 431

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPDPVAISSILANAS 306
            +F  +   D++S+N+++TG +  G + +AF + R M      G  P+ + + ++L   +
Sbjct: 432 RIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCA 491

Query: 307 LLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +L     G ++HG+ +R  ++ D+ + ++L+ +Y+K G L  +  +FD +P+++ ++WN 
Sbjct: 492 ILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNV 551

Query: 364 IIHA---HSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +I A   H    EA + F++M   G   P+ +TF++ L+AC+H G V  G +LF  M   
Sbjct: 552 LIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERD 611

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +G+ P  +  AC+V++ GRAG +DEAY+M+      E     W  +L AC LH NV +GE
Sbjct: 612 HGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGE 671

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A ++L ELEP+   ++ LL  IY  AG+      V   +  RG+
Sbjct: 672 IAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGV 716



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 222/468 (47%), Gaps = 45/468 (9%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHR-----LIPTNLLRKNKGIS-SKLLRLYAT 138
            G  + + T  S+L     L A    ++L R      +   LL  ++  + + LL +YA 
Sbjct: 156 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 215

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            GL+ +A ++F   +        WN+++S   + G +++A+   + M   GV PD  TF 
Sbjct: 216 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 275

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRI-- 255
             L AC+ L L+ VG ++H   ++      + FV +ALVDMYA    + KAR VFD +  
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 335

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIG 311
             K L  +N+M+ GY   G+  EA  +F  M    GF P    ++S+L   A +      
Sbjct: 336 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 395

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----H 366
             VHG+V++RG+  +  + N+L+ +Y++ GK D A  +F  +   DVVSWN++I      
Sbjct: 396 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 455

Query: 367 AHSKDHEALIY-FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            H  D   L    +Q+E  GV+P+ +T ++LL  CA L +   G+ +    V ++ +   
Sbjct: 456 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV-RHALDTD 514

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           V   + +V++Y + G +  A S  V       + + W  L+ A  +HG    GE  A  L
Sbjct: 515 VAVGSALVDMYAKCGCL--ALSRAVFDRLPRRNTITWNVLIMAYGMHG--LGGE--ATVL 568

Query: 486 F-------ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           F       E  P NE  F   +    ++G           +VDRGL+ 
Sbjct: 569 FDRMTASGEARP-NEVTFMAALAACSHSG-----------MVDRGLQL 604



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 197/413 (47%), Gaps = 25/413 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           A+ L      +A+ H   L R +   L R +  +++ LL  YA  G +  A +VF  +S+
Sbjct: 67  AAALRDARSARAI-HAAALRRGL---LHRPSPAVANALLTAYARCGRLAAALEVFGSISD 122

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC----AGLGLI 210
               A  +NSLIS       ++ A+A    M   G     FT   VL+A     A    +
Sbjct: 123 SAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAV 182

Query: 211 RVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSM 266
           R+G + H  A++ G   G   F  NAL+ MYA+ G +  A+ +F     G  D++++N+M
Sbjct: 183 RLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTM 242

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG- 322
           ++  +  G+  EA      M+  G  PD V  +S L   S   LL +G ++H +V++   
Sbjct: 243 VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDE 302

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSK---DHEALIY 377
           +  +  +A++L+ +Y+   ++ +A  +FD +P   K +  WN++I  +++   D EAL  
Sbjct: 303 LAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 362

Query: 378 FEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           F +ME + G +P   T  S+L ACA   +    E +   +V++     R    A M ++Y
Sbjct: 363 FARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM-DMY 421

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            R G  D A  +    M      V W  L+  C + G+V      A+++ +LE
Sbjct: 422 ARLGKTDVARRIFA--MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 472


>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
 gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
 gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
          Length = 470

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 241/441 (54%), Gaps = 18/441 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            + LL  C    AV  G + H          +  + + L+ +Y   G    A +VFD M 
Sbjct: 9   LSGLLRRCAAAGAVRPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMR 68

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
             +  A+  N L++         DA+ ++ ++   G+ PD ++ P V++ACA L    +G
Sbjct: 69  APSMHAY--NVLLAASPP----RDAMEVFSRLLASGLRPDGYSVPAVVRACAELPDAVLG 122

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  AVR G   +  V  AL+DMYAK G +  A  VFD +  +D + +N M+ GY   
Sbjct: 123 GVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARA 182

Query: 274 GLLVEAFDIF-RGMI-----LNGFDPDPVAISSILANASLLRIGAQVHGWVLR-RGVEWD 326
           G  VE F+IF R  +     +NG    P ++ +I A    L  G ++HG ++R    + D
Sbjct: 183 GRAVETFEIFSRAQVEAVNMVNGLQAVP-SVLNICAKEGELMKGREIHGRMVRCLAFDSD 241

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           + + N+LI +Y+K G+++ +  +F  M Q+DVVSW+++IH+   H K  +AL  + +M  
Sbjct: 242 IAVGNALINMYAKCGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLS 301

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           +GV P+ +TF S+LS+C+H G V  G ++F  M + +G+ P  EHYACMV+L GRAG I+
Sbjct: 302 EGVKPNWITFTSVLSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIE 361

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA  +I  KM  E    VWGALL AC +H NV +GE AA +LFELE  +  N+  L  IY
Sbjct: 362 EAVGLI-RKMPMEPCASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIY 420

Query: 504 GNAGRLDDVERVERMLVDRGL 524
              G+ D V  +   + + G+
Sbjct: 421 DAVGQSDGVAGLRSRMRELGM 441



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 144/299 (48%), Gaps = 22/299 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+     +  +++  C +L     G  +H       L  N  +++ LL +YA  G +
Sbjct: 95  LASGLRPDGYSVPAVVRACAELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFL 154

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--TFPRV 200
           D+A +VFD+M+ R A    WN +++GYA  G   +   ++ + + E V         P V
Sbjct: 155 DDAVRVFDEMTERDAVV--WNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSV 212

Query: 201 LKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           L  CA  G +  G ++H   VR   F  D  V NAL++MYAKCG +  ++ VF  +  +D
Sbjct: 213 LNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQRD 272

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----------LLR 309
           ++S+++M+  Y  HG   +A  ++  M+  G  P+ +  +S+L++ S          +  
Sbjct: 273 VVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKIFE 332

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA 367
              +VHG  +    E   C+ + L     + G +++A  L   MP +   S W +++ A
Sbjct: 333 SMTKVHG--VHPAAEHYACMVDLL----GRAGAIEEAVGLIRKMPMEPCASVWGALLSA 385


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 242/446 (54%), Gaps = 14/446 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T +++++ C  L  +  G   H ++       N  IS+ L+ +Y     +D+A
Sbjct: 157 GIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDA 216

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKAC 204
             VF ++    A    W S+IS +     Y+ A+  ++ M  + G+ PD FTF  VL AC
Sbjct: 217 ILVFVELPQPDAIC--WTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTAC 274

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG ++ G++VH   +  G   + FV ++LVDMY KC  + +++ VFDR+  K+L+S+ 
Sbjct: 275 GNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWT 334

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           ++L GY  +G       IFR     G   D  +  ++L   A  + +R G +VH   ++R
Sbjct: 335 ALLGGYCQNGDFESVIRIFR----EGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKR 390

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
               D+   ++L+ +Y+K G +D A  +F  M  +++++WNS+I+  +++    E    F
Sbjct: 391 CCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLF 450

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M  +G+ PD+++FV +L AC+H G V  G++ F+ M E Y I P +EHY CM++L GR
Sbjct: 451 DEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGR 510

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL++EA ++I E       P +W  LL AC    +    E  A+K  EL+PD+  ++  
Sbjct: 511 AGLLEEAENLI-ENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVY 569

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  +Y   GR DD  ++  ++  RG+
Sbjct: 570 LANVYRAVGRWDDAVKIRNLMTKRGV 595



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 234/465 (50%), Gaps = 50/465 (10%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQM 152
           +ASLL+TC +  +  HGI+ H     + L  ++ + + LL LY   G  + EA +VFD +
Sbjct: 63  YASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGL 122

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W S+I+GY ++ + + ++ L+ +M   G+EP+ FT   V+KAC+GLG +R+
Sbjct: 123 FYKDLIS--WTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRL 180

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+  H   +  GF  +  +  AL+DMY +   +  A  VF  +   D I + S+++ +  
Sbjct: 181 GKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTR 240

Query: 273 HGLLVEAFDIFRGMIL-NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
           + +  +A   F  M   +G  PD     ++L    N   L+ G +VH  V+  G+  ++ 
Sbjct: 241 NDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVF 300

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHEALIYFEQMERDGV 386
           + +SL+ +Y K   ++Q+  +FD M  K++VSW +++  +  + D E++I   ++ R+G 
Sbjct: 301 VESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVI---RIFREGK 357

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             D  +F ++L ACA L +V+ G+ +    V++      V   A +V+LY + G ID AY
Sbjct: 358 KVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESA-LVDLYAKCGCIDFAY 416

Query: 447 SMIV-------------------------------EKMEFEASP--VVWGALLYACYLHG 473
            + V                               E +E    P  + +  +L+AC   G
Sbjct: 417 RIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAG 476

Query: 474 NVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            V  G+    A  +++E++P  EH +  +I + G AG L++ E +
Sbjct: 477 LVDQGKKYFAAMTEVYEIKPGIEH-YNCMIDLLGRAGLLEEAENL 520



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 184/349 (52%), Gaps = 25/349 (7%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G++    TF ++L  C  L  ++ G ++H  + T+ L  N  + S L+ +Y    L++
Sbjct: 257 KHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVN 316

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           ++  VFD+MS +   +  W +L+ GY + G++E  I ++     EG + D ++F  VL+A
Sbjct: 317 QSQCVFDRMSVKNLVS--WTALLGGYCQNGDFESVIRIF----REGKKVDTYSFGTVLRA 370

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CAGL  +R G++VH   V+     D    +ALVD+YAKCG I  A  +F R+  ++LI++
Sbjct: 371 CAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITW 430

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG-----AQVH 315
           NSM+ G+  +G   E F +F  MI  G  PD ++   +L   ++A L+  G     A   
Sbjct: 431 NSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTE 490

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA-HSKDHE 373
            + ++ G+E      N +I +  + G L++A  L ++   +D  S W  ++ A  +  H 
Sbjct: 491 VYEIKPGIEH----YNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAASPHS 546

Query: 374 ALIYFEQMERDGV--LPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           A    E++ +  V   PD HL++V L +    +G      ++ ++M ++
Sbjct: 547 ATA--ERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKR 593


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 246/452 (54%), Gaps = 29/452 (6%)

Query: 96  SLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           SL ETC  +  ++  H   L    P         +  K+L+L ++F  ++ A +VFD + 
Sbjct: 110 SLAETCSDMSQLKQLHAFTLRTTYPEE--PATLFLYGKILQLSSSFSDVNYAFRVFDSIE 167

Query: 154 NRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIR 211
           N ++F   WN+LI   A ++   E+A  LY +M E G   PD+ TFP VLKACA +    
Sbjct: 168 NHSSFM--WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 225

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G++VH   V+ GFG D +V N L+ +Y  CG +  AR VFD +  + L+S+NSM+   +
Sbjct: 226 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 285

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR---GVEW 325
             G    A  +FR M    F+PD   + S+L   A    L +G   H ++LR+    V  
Sbjct: 286 RFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 344

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQM- 381
           D+ + NSLI +Y K G L  A  +F  M ++D+ SWN++I     H +  EA+ +F++M 
Sbjct: 345 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 404

Query: 382 -ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
            +R+ V P+ +TFV LL AC H G V  G + F +MV  Y I P +EHY C+V+L  RAG
Sbjct: 405 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 464

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHN---- 495
            I EA  M++  M  +   V+W +LL AC   G +V + E  A+ +   + DNE +    
Sbjct: 465 YITEAIDMVMS-MPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 523

Query: 496 ---FELLIKIYGNAGRLDDVERVERMLVDRGL 524
              + LL ++Y +A R +DV  V +++ + G+
Sbjct: 524 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 555



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 23/307 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  +     G ++H  I  +    +  +++ L+ LY + G +D A +VFD+M
Sbjct: 210 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 269

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R+  +  WNS+I      GEY+ A+ L+ +M +   EPD +T   VL ACAGLG + +
Sbjct: 270 PERSLVS--WNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 326

Query: 213 GEKVH---LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           G   H   L         D  V N+L++MY KCG +  A  VF  +  +DL S+N+M+ G
Sbjct: 327 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 386

Query: 270 YIHHGLLVEAFDIFRGMI--LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           +  HG   EA + F  M+       P+ V    +L   +    +  G Q    ++R    
Sbjct: 387 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---- 442

Query: 325 WDLCIANSL------IVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKDHEALIY 377
            D CI  +L      + + ++ G + +A  +   MP K D V W S++ A  K   ++  
Sbjct: 443 -DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 501

Query: 378 FEQMERD 384
            E++ R+
Sbjct: 502 SEEIARN 508


>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 246/442 (55%), Gaps = 19/442 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  LL  C   K  ++  K H  +      ++  I+++L+  Y+ F  +D A +VFD +S
Sbjct: 23  YTELLNLC---KTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLS 79

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
               F    N +I  YA    + +A+ ++  M   G+ P+ +T+P VLKAC   G  + G
Sbjct: 80  EPDVFCC--NVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACGAEGASKKG 137

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  AV+ G   D FV NALV  YAKC D+  +R VFD I ++D++S+NSM++GY  +
Sbjct: 138 RVIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVN 197

Query: 274 GLLVEA----FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
           G + +A    +D+ R   + G  PD     ++L   A A+ +  G  +H ++++  +  D
Sbjct: 198 GYVDDAILLFYDMLRDESVGG--PDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLD 255

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
             +   LI +YS  G +  A  +FD +  + V+ W++II     H    EAL  F Q+  
Sbjct: 256 SAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVG 315

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD + F+ LLSAC+H G ++ G  LF+ M E YG++    HYAC+V+L GRAG ++
Sbjct: 316 AGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAM-ETYGVAKSEAHYACIVDLLGRAGDLE 374

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           +A   I + M  +    ++GALL AC +H N+ + E AA+KLF L+PDN   + +L ++Y
Sbjct: 375 KAVEFI-QSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRYVILAQMY 433

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
            +A R  D  RV +++ D+ ++
Sbjct: 434 EDAERWLDAARVRKVVKDKEIK 455



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF ++L    Q   +  G  +H  I    +  +  + + L+ LY+  G +  A  +FD++
Sbjct: 223 TFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRI 282

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+R+     W+++I  Y   G  ++A+AL+ Q+   G+ PD   F  +L AC+  GL+  
Sbjct: 283 SDRSVIV--WSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQ 340

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G  +      +G          +VD+  + GD+ KA
Sbjct: 341 GWHLFNAMETYGVAKSEAHYACIVDLLGRAGDLEKA 376


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 240/447 (53%), Gaps = 9/447 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q+ +     T A+++  C  L  +  G  +H  +    L  N  IS+ LL +Y   G +D
Sbjct: 259 QDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELD 318

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  VFD++S        W ++I GY + G   DA+ L+       + P+  T   VL A
Sbjct: 319 HARCVFDELSYIDLVL--WTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSA 376

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
            A L  + +G+ +H  AV+ G      V NALVDMYAKC  + +A  +F RI NKD++++
Sbjct: 377 SAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAW 436

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
           NSM++GY  + +  +A  +F+ M L G  PD +++ + L+ +  L    IG  +HG+ ++
Sbjct: 437 NSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVK 496

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS--KDHEALIY- 377
                ++ +  +L+ +Y+K G L  A  +FD M  ++ V+W ++I  +    D    I+ 
Sbjct: 497 HAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHL 556

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F +M +DGV P+ + F S+LS C+H G V  G+R F  M + + I+P ++HYACMV++  
Sbjct: 557 FGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLA 616

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +++A   I + M  +A   VWGA L+ C LH  +   E A +++  L P+    + 
Sbjct: 617 RAGNLEDALEFI-DNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYV 675

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           L+  +Y + G  D    + R + ++GL
Sbjct: 676 LISNLYTSNGMWDKSLAIRRWMQEKGL 702



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 196/354 (55%), Gaps = 13/354 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ +YA    ++ A +VF+++ +R   +  W S+ISG  + G   D + L+ +M +
Sbjct: 202 VMNSLVDMYAKAEDLECARKVFERIPDRNVVS--WTSMISGCVQNGFASDGLLLFNKMRQ 259

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           + V P ++T   V+ AC+ L  +  G  +H   ++ G   + F+  AL+DMY KCG++  
Sbjct: 260 DNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDH 319

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           AR VFD +   DL+ + +M+ GY  +G  ++A  +F         P+ V  +++L+ ++ 
Sbjct: 320 ARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQ 379

Query: 308 LR---IGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           LR   +G  +HG  ++ G VE+++ + N+L+ +Y+K   + +A  +F  +  KDVV+WNS
Sbjct: 380 LRDLSLGKSIHGLAVKLGLVEYNV-VGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNS 438

Query: 364 IIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I  +++++   +AL+ F+QM   G  PD ++ V+ LSA   LG + +G+ +    V K+
Sbjct: 439 MISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAV-KH 497

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
                +     ++NLY + G +  A   + ++M  + + V W A++    + G+
Sbjct: 498 AFVSNIYVDTALLNLYNKCGDLLSARR-VFDEMN-DRNSVTWCAMIGGYGMQGD 549



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 186/361 (51%), Gaps = 19/361 (5%)

Query: 97  LLETCYQLKAVEHGIKLH-RLI--PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           LL +C  L ++     LH RL+  P  LL  +    +KLL  YA  G +  A  VFD   
Sbjct: 68  LLPSCGTLLSLR---VLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 124

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP---DQFTFPRVLKACAGLGLI 210
              A+++   +++    +   + DA+AL+  M      P   D F     LKAC      
Sbjct: 125 RPDAYSY--GAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEY 182

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G  +H DA++ G G DGFV+N+LVDMYAK  D+  AR VF+RI +++++S+ SM++G 
Sbjct: 183 SYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGC 241

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDL 327
           + +G   +   +F  M  +   P    I++++   S    L  G  +HG V+++G+  + 
Sbjct: 242 VQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNS 301

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERD 384
            I+ +L+ +Y K G+LD A  +FD +   D+V W ++I  ++++    +AL  F      
Sbjct: 302 FISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFA 361

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + P+ +T  ++LSA A L  + +G+ +  + V+   +   V   A +V++Y +   + E
Sbjct: 362 NIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNA-LVDMYAKCQAVSE 420

Query: 445 A 445
           A
Sbjct: 421 A 421



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 159/315 (50%), Gaps = 27/315 (8%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LD++   L+    N I   + T A++L    QL+ +  G  +H L     L +   + + 
Sbjct: 349 LDALRLFLDKRFAN-IAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNA 407

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA    + EA ++F ++SN+   A  WNS+ISGYAE    +DA+ L+ QM  +G  
Sbjct: 408 LVDMYAKCQAVSEADRIFGRISNKDVVA--WNSMISGYAENNMGDDALMLFKQMSLQGSS 465

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD  +    L A   LG + +G+ +H  AV+  F  + +V  AL+++Y KCGD++ AR V
Sbjct: 466 PDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRV 525

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
           FD + +++ +++ +M+ GY   G    +  +F  M+ +G  P+ +A +SIL+  S     
Sbjct: 526 FDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCS----- 580

Query: 312 AQVHGWVLRRGVEWDLCIAN------------SLIVVYSKDGKLDQACWLFDHMP-QKDV 358
              H  ++  G  +   +A              ++ V ++ G L+ A    D+MP Q D 
Sbjct: 581 ---HSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADT 637

Query: 359 VSWNSIIHA---HSK 370
             W + +H    HS+
Sbjct: 638 SVWGAFLHGCELHSR 652


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 245/442 (55%), Gaps = 11/442 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SL+  C +L  +  G  +H  +  N +  N  +++ LL +Y   G I +A +VFD+ 
Sbjct: 236 TVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDES 295

Query: 153 SNRT--AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           S+ +       W ++I GY++ G    A+ L+   +  G+ P+  T   +L +CA LG  
Sbjct: 296 SSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNS 355

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G+ +H  AV+ G   D  V NALVDMYAKCG +  AR VF+ +  KD++S+NS+++G+
Sbjct: 356 VMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGF 414

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWD 326
           +  G   EA ++FR M L  F PD V +  IL   A+  +L +G  VHG  L+ G V   
Sbjct: 415 VQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSS 474

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMER 383
           + +  +L+  Y+K G    A  +FD M +K+ V+W ++I  +    +   +L  F  M  
Sbjct: 475 IYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLE 534

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           + V P+ + F ++L+AC+H G V  G RLF++M  +    P ++HYACMV++  RAG ++
Sbjct: 535 ELVEPNEVVFTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLE 594

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA   I E+M  + S  V+GA L+ C LH    +G  A +K+ EL PD    + L+  +Y
Sbjct: 595 EALDFI-ERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLY 653

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
            + GR   V++V  M+  RGL 
Sbjct: 654 ASDGRWGMVKQVREMIKQRGLN 675



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 208/400 (52%), Gaps = 17/400 (4%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+  YA F  +DEA + FD++         W S+I  Y +     + + L+ +M E  V+
Sbjct: 173 LVDAYAKFARVDEATRAFDEIHENDDVV-SWTSMIVAYVQNDCAREGLTLFNRMREAFVD 231

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            ++FT   ++ AC  L  +  G+ VH   ++ G   + ++  +L++MY KCG+I  A  V
Sbjct: 232 GNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKV 291

Query: 252 FDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           FD       ++DL+S+ +M+ GY   G    A ++F+    +G  P+ V +SS+L++ + 
Sbjct: 292 FDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQ 351

Query: 308 LR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L    +G  +HG  ++ G++ D  + N+L+ +Y+K G +  A  +F+ M +KDVVSWNSI
Sbjct: 352 LGNSVMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSI 410

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I    +    +EAL  F +M  +   PD +T V +LSACA LG + +G  +  + ++   
Sbjct: 411 ISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGL 470

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           +   +     ++N Y + G    A  M+ + M  E + V WGA++    + G+     T 
Sbjct: 471 VVSSIYVGTALLNFYAKCG-DARAARMVFDSMG-EKNAVTWGAMIGGYGMQGDGNGSLTL 528

Query: 482 AQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            + + E  +EP NE  F  ++    ++G + +  R+  ++
Sbjct: 529 FRDMLEELVEP-NEVVFTTILAACSHSGMVGEGSRLFNLM 567



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 181/398 (45%), Gaps = 45/398 (11%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           +Q+ +P   L+    + +D + S   GI   + T +SLL +C QL     G  LH L   
Sbjct: 315 SQRGYPHLALE----LFKDKKWS---GILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVK 367

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
             L  +  + + L+ +YA  G++ +A  VF+ M  +   +  WNS+ISG+ + GE  +A+
Sbjct: 368 CGL-DDHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVS--WNSIISGFVQSGEAYEAL 424

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDM 238
            L+ +M  E   PD  T   +L ACA LG++ +G  VH  A++ G      +V  AL++ 
Sbjct: 425 NLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNF 484

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           YAKCGD   AR VFD +G K+ +++ +M+ GY   G    +  +FR M+    +P+ V  
Sbjct: 485 YAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVF 544

Query: 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KD 357
           ++ILA  S        H  ++  G                     +  C   + +P  K 
Sbjct: 545 TTILAACS--------HSGMVGEGSRL-----------------FNLMCGELNFVPSMKH 579

Query: 358 VVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
                 ++       EAL + E+M    V P    F + L  C      ++G      M+
Sbjct: 580 YACMVDMLARAGNLEEALDFIERMP---VQPSVSVFGAFLHGCGLHSRFELGGAAIKKML 636

Query: 418 EKYGISPRVEHYACMVNLY---GRAGLIDEAYSMIVEK 452
           E +       +Y  + NLY   GR G++ +   MI ++
Sbjct: 637 ELH--PDEACYYVLVSNLYASDGRWGMVKQVREMIKQR 672



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 168/345 (48%), Gaps = 22/345 (6%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP--- 192
           YA+FG +  A ++F+ +  R  + F    +I  Y  L +    +   +++    + P   
Sbjct: 75  YASFGQLRHARKIFNHLPTRDLYCF--KVMIRAYF-LNDTPSGVVSLYRLMRLSLHPTPH 131

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D   F  V K+CA     +     H   V+     D FVL  LVD YAK   + +A   F
Sbjct: 132 DYVLFSIVFKSCAESRDFQTLTITHCHFVK-SLPSDSFVLTCLVDAYAKFARVDEATRAF 190

Query: 253 DRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LL 308
           D I  N D++S+ SM+  Y+ +    E   +F  M     D +   + S+++  +    L
Sbjct: 191 DEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWL 250

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVVSWNSI 364
             G  VHG+V++ G+  +  +  SL+ +Y K G +  AC +FD        +D+VSW ++
Sbjct: 251 HQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAM 310

Query: 365 IHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  +S+    H AL  F+  +  G+LP+ +T  SLLS+CA LG+  +G+ L  + V K G
Sbjct: 311 IVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAV-KCG 369

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +       A +V++Y + G++ +A   + E M  E   V W +++
Sbjct: 370 LDDHPVRNA-LVDMYAKCGVVSDA-RCVFEAM-LEKDVVSWNSII 411



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 17/298 (5%)

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           +LY    ++   P   TF  + + C  L  ++    +H   +  G   D  +   L+ +Y
Sbjct: 20  SLYHHHGQKQQPPSPPTF-YLSRLCTNLPSLKT---LHASFLIHGLTNDLLLSTKLLSLY 75

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---V 296
           A  G +  AR +F+ +  +DL  +  M+  Y  +        ++R M L+   P P   V
Sbjct: 76  ASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLS-LHPTPHDYV 134

Query: 297 AISSILANASLLR--IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
             S +  + +  R      +      + +  D  +   L+  Y+K  ++D+A   FD + 
Sbjct: 135 LFSIVFKSCAESRDFQTLTITHCHFVKSLPSDSFVLTCLVDAYAKFARVDEATRAFDEIH 194

Query: 355 QK-DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           +  DVVSW S+I A+ ++    E L  F +M    V  +  T  SL+SAC  L  +  G+
Sbjct: 195 ENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGK 254

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE--KMEFEASPVVWGALL 466
            +   ++ K GI         ++N+Y + G I +A  +  E     ++   V W A++
Sbjct: 255 WVHGFVI-KNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMI 311


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 12/465 (2%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISS 130
            D  +Q L   V  G+     TFAS L  C +L+ ++ G ++H  +I  + L  N  ++S
Sbjct: 252 FDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVAS 311

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-G 189
            L+ +YAT   + +A QVFD + +       WN++I GYA+ G  E+A+ L+ +ME E G
Sbjct: 312 ALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAG 371

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P + T   VL ACA        E VH   V+ G   + FV NAL+DMYA+ G    AR
Sbjct: 372 FVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 431

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPDPVAISSILANAS 306
            +F  +   D++S+N+++TG +  G + +AF + R M      G  P+ + + ++L   +
Sbjct: 432 RIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCA 491

Query: 307 LLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +L     G ++HG+ +R  ++ D+ + ++L+ +Y+K G L  +  +FD +P+++ ++WN 
Sbjct: 492 ILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNV 551

Query: 364 IIHA---HSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +I A   H    EA + F++M   G   P+ +TF++ L+AC+H G V  G +LF  M   
Sbjct: 552 LIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERD 611

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +G+ P  +  AC+V++ GRAG +DEAY+M+      E     W  +L AC LH NV +GE
Sbjct: 612 HGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGE 671

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A ++L ELEP+   ++ LL  IY  AG+      V   +  RG+
Sbjct: 672 IAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGV 716



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 222/468 (47%), Gaps = 45/468 (9%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHR-----LIPTNLLRKNKGIS-SKLLRLYAT 138
            G  + + T  S+L     L A    ++L R      +   LL  ++  + + LL +YA 
Sbjct: 156 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 215

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            GL+ +A ++F   +        WN+++S   + G +++A+   + M   GV PD  TF 
Sbjct: 216 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 275

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRI-- 255
             L AC+ L L+ VG ++H   ++      + FV +ALVDMYA    + KAR VFD +  
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 335

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIG 311
             K L  +N+M+ GY   G+  EA  +F  M    GF P    ++S+L   A +      
Sbjct: 336 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 395

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----H 366
             VHG+V++RG+  +  + N+L+ +Y++ GK D A  +F  +   DVVSWN++I      
Sbjct: 396 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 455

Query: 367 AHSKDHEALIY-FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            H  D   L    +Q+E  GV+P+ +T ++LL  CA L +   G+ +    V ++ +   
Sbjct: 456 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV-RHALDTD 514

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
           V   + +V++Y + G +  A S  V       + + W  L+ A  +HG    GE  A  L
Sbjct: 515 VAVGSALVDMYAKCGCL--ALSRAVFDRLPRRNTITWNVLIMAYGMHG--LGGE--ATVL 568

Query: 486 F-------ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           F       E  P NE  F   +    ++G           +VDRGL+ 
Sbjct: 569 FDRMTASGEARP-NEVTFMAALAACSHSG-----------MVDRGLQL 604



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 197/413 (47%), Gaps = 25/413 (6%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           A+ L      +A+ H   L R +   L R +  +++ LL  YA  G +  A +VF  +S+
Sbjct: 67  AAALRDARSARAI-HAAALRRGL---LHRPSPAVANALLTAYARCGRLAAALEVFGSISD 122

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC----AGLGLI 210
               A  +NSLIS       ++ A+A    M   G     FT   VL+A     A    +
Sbjct: 123 SAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAV 182

Query: 211 RVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSM 266
           R+G + H  A++ G   G   F  NAL+ MYA+ G +  A+ +F     G  D++++N+M
Sbjct: 183 RLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTM 242

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG- 322
           ++  +  G+  EA      M+  G  PD V  +S L   S   LL +G ++H +V++   
Sbjct: 243 VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDE 302

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSK---DHEALIY 377
           +  +  +A++L+ +Y+   ++ +A  +FD +P   K +  WN++I  +++   D EAL  
Sbjct: 303 LAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 362

Query: 378 FEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           F +ME + G +P   T  S+L ACA   +    E +   +V++     R    A M ++Y
Sbjct: 363 FARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM-DMY 421

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            R G  D A  +    M      V W  L+  C + G+V      A+++ +LE
Sbjct: 422 ARLGKTDVARRIFA--MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 472


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 241/448 (53%), Gaps = 10/448 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S + +G +V   TF S L  C+     E G  LH L+  + L  N+ I + L+ +Y  
Sbjct: 350 LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 409

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G + E+ +V  QM  R   A  WN+LI GYAE  + + A+A +  M  EGV  +  T  
Sbjct: 410 IGEMSESRRVLLQMPRRDVVA--WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVV 467

Query: 199 RVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
            VL AC   G L+  G+ +H   V  GF  D  V N+L+ MYAKCGD+  ++ +F+ + N
Sbjct: 468 SVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN 527

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQV 314
           +++I++N+ML    HHG   E   +   M   G   D  + S  L+ A+ L +   G Q+
Sbjct: 528 RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQL 587

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           HG  ++ G E D  I N+   +YSK G++ +   +      + + SWN +I A   H   
Sbjct: 588 HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYF 647

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            E    F +M   G+ P H+TFVSLL+AC+H G V  G   + ++   +G+ P +EH  C
Sbjct: 648 EEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCIC 707

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +++L GR+G + EA + I  KM  + + +VW +LL +C +HGN+  G  AA+ L +LEP+
Sbjct: 708 VIDLLGRSGRLAEAETFI-SKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 766

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERML 519
           ++  + L   ++   GR +DVE V + +
Sbjct: 767 DDSVYVLSSNMFATTGRWEDVENVRKQM 794



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 201/388 (51%), Gaps = 12/388 (3%)

Query: 86  GITVQTETFASLLETCYQLKAV-EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           GI   +   ASL+  C +  ++   G+++H  +  + L  +  +S+ +L LY  +GL+  
Sbjct: 53  GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 112

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           + +VF++M +R   +  W SL+ GY++ GE E+ I +Y  M  EGV  ++ +   V+ +C
Sbjct: 113 SRKVFEEMPDRNVVS--WTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC 170

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L    +G ++    V+ G      V N+L+ M    G++  A  +FD++  +D IS+N
Sbjct: 171 GLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWN 230

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRR 321
           S+   Y  +G + E+F IF  M     + +   +S   S+L +    + G  +HG V++ 
Sbjct: 231 SIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM 290

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G +  +C+ N+L+ +Y+  G+  +A  +F  MP KD++SWNS++ +   D    +AL   
Sbjct: 291 GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 350

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M   G   +++TF S L+AC      + G  L  ++V       ++   A +V++YG+
Sbjct: 351 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA-LVSMYGK 409

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G + E+  ++++    +   V W AL+
Sbjct: 410 IGEMSESRRVLLQMPRRDV--VAWNALI 435



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 198/396 (50%), Gaps = 12/396 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     + + ++ +C  LK    G ++   +  + L     + + L+ +  + G +D A
Sbjct: 155 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 214

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           + +FDQMS R   +  WNS+ + YA+ G  E++  ++  M     E +  T   +L    
Sbjct: 215 NYIFDQMSERDTIS--WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 272

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +   + G  +H   V+ GF     V N L+ MYA  G  V+A  VF ++  KDLIS+NS
Sbjct: 273 HVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNS 332

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRG 322
           ++  +++ G  ++A  +   MI +G   + V  +S LA          G  +HG V+  G
Sbjct: 333 LMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSG 392

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFE 379
           + ++  I N+L+ +Y K G++ ++  +   MP++DVV+WN++I  +++D +   AL  F+
Sbjct: 393 LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQ 452

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGS-VKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            M  +GV  +++T VS+LSAC   G  ++ G+ L + +V   G          ++ +Y +
Sbjct: 453 TMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAK 511

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            G  D + S  +       + + W A+L A   HG+
Sbjct: 512 CG--DLSSSQDLFNGLDNRNIITWNAMLAANAHHGH 545



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 177/339 (52%), Gaps = 12/339 (3%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y  FG +  A  +FD M  R   +  WN+++SG   +G Y + +  + +M + G++P  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVS--WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSS 58

Query: 195 FTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           F    ++ AC   G + R G +VH    + G   D +V  A++ +Y   G +  +R VF+
Sbjct: 59  FVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFE 118

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---I 310
            + +++++S+ S++ GY   G   E  DI++GM   G   +  ++S ++++  LL+   +
Sbjct: 119 EMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESL 178

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q+ G V++ G+E  L + NSLI +    G +D A ++FD M ++D +SWNSI  A+++
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           +    E+   F  M R     +  T  +LLS   H+   K G  +  ++V K G    V 
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVV-KMGFDSVVC 297

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
               ++ +Y  AG   EA +++ ++M  +   + W +L+
Sbjct: 298 VCNTLLRMYAGAGRSVEA-NLVFKQMPTK-DLISWNSLM 334



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 27/318 (8%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           D  +   ++    G++    T  S+L  C      +E G  LH  I +     ++ + + 
Sbjct: 445 DKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNS 504

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA  G +  +  +F+ + NR      WN++++  A  G  E+ + L  +M   GV 
Sbjct: 505 LITMYAKCGDLSSSQDLFNGLDNRNIIT--WNAMLAANAHHGHGEEVLKLVSKMRSFGVS 562

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            DQF+F   L A A L ++  G+++H  AV+ GF  D F+ NA  DMY+KCG+I +   +
Sbjct: 563 LDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 622

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
                N+ L S+N +++    HG   E    F  M+  G  P  V   S+L   S     
Sbjct: 623 LPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS----- 677

Query: 312 AQVHGWVLRRGVEWDLCIANS------------LIVVYSKDGKLDQACWLFDHMPQK--D 357
              HG ++ +G+ +   IA              +I +  + G+L +A      MP K  D
Sbjct: 678 ---HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPND 734

Query: 358 VVSWNSIIHAHSKDHEAL 375
           +V W S++ A  K H  L
Sbjct: 735 LV-WRSLL-ASCKIHGNL 750



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 132/245 (53%), Gaps = 10/245 (4%)

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
           MY K G +  AR +FD +  ++ +S+N+M++G +  GL +E  + FR M   G  P    
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 298 ISSILA----NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
           I+S++     + S+ R G QVHG+V + G+  D+ ++ +++ +Y   G +  +  +F+ M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 354 PQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           P ++VVSW S++  +S   +  E +  ++ M  +GV  +  +   ++S+C  L    +G 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           ++   +V K G+  ++     ++++ G  G +D A + I ++M  E   + W ++  A  
Sbjct: 181 QIIGQVV-KSGLESKLAVENSLISMLGSMGNVDYA-NYIFDQMS-ERDTISWNSIAAAYA 237

Query: 471 LHGNV 475
            +G++
Sbjct: 238 QNGHI 242


>gi|108707417|gb|ABF95212.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 469

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 242/437 (55%), Gaps = 42/437 (9%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L  C  L  V  G  +H L+ T   L  +   ++ LL +Y+  GL+  A +VFD+M++R 
Sbjct: 54  LRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASR- 112

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                WN+L++ YA  G  E A+AL  +M   G+ PD  T+  V+               
Sbjct: 113 GDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVS-------------- 158

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
                  GF   G  L A        GD+V A  + D     D++++ S ++G + +   
Sbjct: 159 -------GFALAGDDLMA--------GDLVGA--MKDDGFQPDVVTWTSRVSGSVLNFQY 201

Query: 277 VEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             A  +FR M++ G    P    IS+IL   AN + ++ G +VHG+ +  GVE +L +++
Sbjct: 202 GRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSS 261

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +L+ +Y+K G + +A  LFD MPQ+  V+WNS+I   +      EA+  F++M RDG  P
Sbjct: 262 ALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKP 321

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           DHLTF ++L+AC++ G V+VG+ L+  M  +YG+ PR+EHYACMV+L GRAG +DEAY  
Sbjct: 322 DHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGF 381

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I   M  E    VWGALL AC  HGN+ + E AA +L  +EPDN  +  LL     NAG+
Sbjct: 382 I-RAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASCLLLSSALANAGK 440

Query: 509 LDDVERVERMLVDRGLE 525
            DDV +++R++  R L+
Sbjct: 441 QDDVFKIKRLVKRRRLK 457



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 166/403 (41%), Gaps = 87/403 (21%)

Query: 162 WNSLISGYAELGEYEDAIALYF-----QMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEK 215
           W   ++  +  G + D + L+F     Q    G V+P     P  L+ACA L  +  G  
Sbjct: 9   WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 68

Query: 216 VH-LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHH 273
           +H L   R     D     AL+DMY+KCG +  AR VFD + ++ D + +N++L  Y  H
Sbjct: 69  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 128

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
           GL   A  +   M   G  PD V  + +++  +L                  D  +A  L
Sbjct: 129 GLPEHALALAVKMRGIGLCPDLVTWNIVVSGFAL----------------AGDDLMAGDL 172

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG--VLP 388
           +     DG             Q DVV+W S +     + +   A   F  M   G  VLP
Sbjct: 173 VGAMKDDGF------------QPDVVTWTSRVSGSVLNFQYGRARALFRAMMVAGGRVLP 220

Query: 389 DHLTFVSLLSACAHLGSVKVGERL--FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
              T  ++L A A++  VK G+ +  +SV+    G+   +   + +V++Y + GL+ EA 
Sbjct: 221 SSATISTILPAFANVADVKHGKEVHGYSVVA---GVEQELTVSSALVDMYAKCGLVLEAR 277

Query: 447 SMIVEKMEFEASPVVWG-----------------------------------ALLYACYL 471
            +  +KM  + S V W                                    A+L AC  
Sbjct: 278 RLF-DKMP-QRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSY 335

Query: 472 HGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            G V +G+    A Q  + +EP  EH +  ++ + G AGRLD+
Sbjct: 336 GGMVEVGKILYRAMQVEYGVEPRLEH-YACMVHLLGRAGRLDE 377



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 12/223 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            + T +++L     +  V+HG ++H       + +   +SS L+ +YA  GL+ EA ++F
Sbjct: 221 SSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLF 280

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+M  R+     WNS+I G A  G  ++A+ L+ +M  +G +PD  TF  VL AC+  G+
Sbjct: 281 DKMPQRSTVT--WNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGM 338

Query: 210 IRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSM 266
           + VG K+   A++  +G +  +     +V +  + G + +A      +    D   + ++
Sbjct: 339 VEVG-KILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 397

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVA----ISSILANA 305
           L     HG  +E  ++    +L   +PD  A    +SS LANA
Sbjct: 398 LGACRSHG-NIELAELAASRLL-AVEPDNAASCLLLSSALANA 438


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 248/453 (54%), Gaps = 29/453 (6%)

Query: 95  ASLLETCYQLKAVE--HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           A++L+TC  +  ++  H   L    P         +  K+L+L ++F  ++ A +VFD +
Sbjct: 29  ATVLQTCSDMSQLKQLHAFTLRTTYPEE--PATLFLYGKILQLSSSFSDVNYAFRVFDSI 86

Query: 153 SNRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLI 210
            N ++F   WN+LI   A ++   E+A  LY +M E G   PD+ TFP VLKACA +   
Sbjct: 87  ENHSSFM--WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 144

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G++VH   V+ GFG D +V N L+ +Y  CG +  AR VFD +  + L+S+NSM+   
Sbjct: 145 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 204

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR---GVE 324
           +  G    A  +FR M    F+PD   + S+L   A    L +G   H ++LR+    V 
Sbjct: 205 VRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 263

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQM 381
            D+ + NSLI +Y K G L  A  +F  M ++D+ SWN++I     H +  EA+ +F++M
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 323

Query: 382 --ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
             +R+ V P+ +TFV LL AC H G V  G + F +MV  Y I P +EHY C+V+L  RA
Sbjct: 324 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 383

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHN--- 495
           G I EA  M++  M  +   V+W +LL AC   G +V + E  A+ +   + DNE +   
Sbjct: 384 GYITEAIDMVM-SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 442

Query: 496 ----FELLIKIYGNAGRLDDVERVERMLVDRGL 524
               + LL ++Y +A R +DV  V +++ + G+
Sbjct: 443 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 475



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 23/307 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C  +     G ++H  I  +    +  +++ L+ LY + G +D A +VFD+M
Sbjct: 130 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 189

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R+  +  WNS+I      GEY+ A+ L+ +M +   EPD +T   VL ACAGLG + +
Sbjct: 190 PERSLVS--WNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 246

Query: 213 GEKVH---LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           G   H   L         D  V N+L++MY KCG +  A  VF  +  +DL S+N+M+ G
Sbjct: 247 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 306

Query: 270 YIHHGLLVEAFDIFRGMI--LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           +  HG   EA + F  M+       P+ V    +L   +    +  G Q    ++R    
Sbjct: 307 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---- 362

Query: 325 WDLCIANSL------IVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKDHEALIY 377
            D CI  +L      + + ++ G + +A  +   MP K D V W S++ A  K   ++  
Sbjct: 363 -DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 421

Query: 378 FEQMERD 384
            E++ R+
Sbjct: 422 SEEIARN 428


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 243/431 (56%), Gaps = 11/431 (2%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +S+L  C  L+ +E G ++H  +       +  + + L+  Y     +    ++FDQM  
Sbjct: 256 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 315

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           +   +  W ++ISGY +     +A+ L+ +M   G +PD F    VL +C     +  G 
Sbjct: 316 KNIIS--WTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGR 373

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH   ++     D FV N L+DMYAK   ++ A+ VFD +  +++ISYN+M+ GY    
Sbjct: 374 QVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQE 433

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIAN 331
            L EA ++F  M +    P+    ++++  AS    LR G Q H  +++ G+++   + N
Sbjct: 434 KLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN 493

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +L+ +Y+K G +++A  +F+    +DVV WNS+I  H++     EAL  F +M ++G+ P
Sbjct: 494 ALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP 553

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +++TFV++LSAC+H G V+ G   F+ M   +GI P  EHYAC+V+L GR+G + EA   
Sbjct: 554 NYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEF 612

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I EKM  E + +VW +LL AC + GNV +G+ AA+     +P +  ++ LL  I+ + G 
Sbjct: 613 I-EKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGM 671

Query: 509 LDDVERV-ERM 518
             DV++V +RM
Sbjct: 672 WADVKKVRDRM 682



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 228/430 (53%), Gaps = 22/430 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            AS++  C QL  VE G +LH  +  +   ++  + + L+  Y+  G I+EA  VFDQ+S
Sbjct: 154 LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS 213

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +TA    W ++I+GY + G    ++ L+ QM E  V PD++    VL AC+ L  +  G
Sbjct: 214 EKTAVT--WTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 271

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H   +R G   D  V+N L+D Y KC  +   R +FD++  K++IS+ +M++GY+ +
Sbjct: 272 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 331

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIA 330
               EA  +F  M   G+ PD  A +S+L +      L  G QVH + ++  +E D  + 
Sbjct: 332 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVK 391

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVL 387
           N LI +Y+K   L  A  +FD M +++V+S+N++I  +S   K  EAL  F +M      
Sbjct: 392 NGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQK 451

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS--PRVEHYACMVNLYGRAGLIDEA 445
           P+  TF +L++A ++L S++ G++  + +V K G+   P V +   +V++Y + G I+EA
Sbjct: 452 PNEFTFAALITAASNLASLRHGQQFHNQLV-KMGLDFCPFVTN--ALVDMYAKCGSIEEA 508

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIK 501
             M    +  +   V W +++     HG     E A     E+  +    N   F  ++ 
Sbjct: 509 RKMFNSSIWRDV--VCWNSMISTHAQHGE---AEEALGMFREMMKEGIQPNYVTFVAVLS 563

Query: 502 IYGNAGRLDD 511
              +AGR++D
Sbjct: 564 ACSHAGRVED 573



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 228/455 (50%), Gaps = 41/455 (9%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           FA+LL+       + H   +H  I  + L+ +  +++ L+ + +    +D A  VFD+M 
Sbjct: 52  FANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMP 111

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRV 212
           ++      W+S++S Y++ G  E+A+ ++  ++ + G  P++F    V++AC  LG++  
Sbjct: 112 HKNLIT--WSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK 169

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   VR GF  D +V  +L+D Y+K G+I +AR VFD++  K  +++ +++ GY  
Sbjct: 170 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 229

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
            G    + ++F  M      PD   +SS+L+  S+L     G Q+H +VLRRG E D+ +
Sbjct: 230 CGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSV 289

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
            N LI  Y+K  ++     LFD M  K+++SW ++I  +   S D EA+  F +M R G 
Sbjct: 290 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGW 349

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLI 442
            PD     S+L++C    +++ G +     V  Y I   +E        ++++Y ++ L+
Sbjct: 350 KPDGFACTSVLTSCGSREALEQGRQ-----VHAYTIKANLESDEFVKNGLIDMYAKSNLL 404

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-----------LEPD 491
            +A    V  +  E + + + A++           G ++ +KL E           L+  
Sbjct: 405 IDAKK--VFDVMAEQNVISYNAMIE----------GYSSQEKLSEALELFHEMRVRLQKP 452

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
           NE  F  LI    N   L   ++    LV  GL+F
Sbjct: 453 NEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF 487



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA+L+     L ++ HG + H  +    L     +++ L+ +YA  G I+EA ++F+  
Sbjct: 456 TFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSS 515

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WNS+IS +A+ GE E+A+ ++ +M +EG++P+  TF  VL AC+  G +  
Sbjct: 516 IWRDVVC--WNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVED 573

Query: 213 GEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKARTVFDRI 255
           G   H +++  GFG      +   +V +  + G + +A+   +++
Sbjct: 574 GLN-HFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKM 616


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 141/422 (33%), Positives = 237/422 (56%), Gaps = 10/422 (2%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G++LH L+  + L     + + L+ +YA    +D A  VF     R +    W+++I+GY
Sbjct: 244 GVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSIT--WSAMITGY 301

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           A+ GE + A  ++ QM   G  P +FTF  +L A + +G + VG++ H   V+ GF    
Sbjct: 302 AQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQV 361

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
           +V +ALVDMYAKCG    A+  F ++ +  D++ + +M+TG++ +G   EA  ++  M  
Sbjct: 362 YVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDK 421

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
            G  P  + ++S+L   A  + L  G Q+H  +L+ G      +  +L  +YSK G L+ 
Sbjct: 422 EGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLED 481

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +  +F  MP +D++SWNSII     H +  +AL  FE+M+ +G+ PDH+TF+++L AC+H
Sbjct: 482 SMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSH 541

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
           +G V  G   F  M + YG+ P+++HYAC+V++  RAG + EA   I E +  +    +W
Sbjct: 542 MGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFI-ESITIDHGTCLW 600

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
             +L AC    +  +G  A ++L EL  ++   + LL  IY    + +DVERV  ++  R
Sbjct: 601 RIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLR 660

Query: 523 GL 524
           G+
Sbjct: 661 GV 662



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 210/407 (51%), Gaps = 24/407 (5%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL---IPTNLLRKNKGISSKLLRLYAT 138
           S  + +     +FA++     ++ +   G   H     +P++    N  +S+ LL +Y  
Sbjct: 111 SSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCK 170

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTF 197
            G I +A +VFDQM +R A +  W +++SGYA     E+A  L+   ++E  +E ++F  
Sbjct: 171 LGAISDARRVFDQMPHRNAVS--WAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVA 228

Query: 198 PRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDMYAKCGDIVKARTVFDR 254
             VL A +  LGL+ +G ++H   +    G  GFV   N+LV MYAK   +  A  VF  
Sbjct: 229 TAVLSAVSVPLGLL-IGVQLH--GLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGS 285

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIG 311
              ++ I++++M+TGY  +G    A  +F  M   GF P       IL  +S    L +G
Sbjct: 286 SKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVG 345

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSK 370
            Q HG +++ G E  + + ++L+ +Y+K G    A   F  +    DVV W ++I  H +
Sbjct: 346 KQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQ 405

Query: 371 D---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRV 426
           +    EAL+ + +M+++GV+P +LT  S+L ACA L +++ G++L + +++  +G+   V
Sbjct: 406 NGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSV 465

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
                +  +Y + G +++  SM+V +   +   + W +++     HG
Sbjct: 466 G--TALSTMYSKCGNLED--SMVVFRRMPDRDIISWNSIISGFSQHG 508



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 9/267 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G +    TF  +L     + A+  G + H L+      +   + S L+ +YA  G   +A
Sbjct: 321 GFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDA 380

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              F Q+ +       W ++I+G+ + GE+E+A+ LY +M++EGV P   T   VL+ACA
Sbjct: 381 KDGFHQLYDVDDVVI-WTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACA 439

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  +  G+++H   ++ GFG  G V  AL  MY+KCG++  +  VF R+ ++D+IS+NS
Sbjct: 440 CLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNS 499

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           +++G+  HG   +A D+F  M L G  PD +   ++L   S   +G    GW   R +  
Sbjct: 500 IISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACS--HMGLVDRGWFYFRAMSK 557

Query: 326 DLCIANSL------IVVYSKDGKLDQA 346
           D  +   L      + + S+ G+L +A
Sbjct: 558 DYGLIPKLDHYACIVDILSRAGQLKEA 584



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 178/355 (50%), Gaps = 21/355 (5%)

Query: 128 ISSKLLRLYAT--FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL-YFQ 184
           +S+ L+  Y +    L+  A  VF  +         WNSL++    L  ++   AL +F+
Sbjct: 51  VSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSLLN---PLSRHQPLAALSHFR 107

Query: 185 M---EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG---FVLNALVDM 238
                 + V P   +F  V  A A +     G   H  A +          FV  AL++M
Sbjct: 108 SMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNM 167

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVA 297
           Y K G I  AR VFD++ +++ +S+ +M++GY       EAF++FR M+     + +   
Sbjct: 168 YCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFV 227

Query: 298 ISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
            +++L+  S+   L IG Q+HG VL+ G+   + + NSL+ +Y+K   +D A  +F    
Sbjct: 228 ATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSK 287

Query: 355 QKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +++ ++W+++I  ++++ E   A   F QM   G  P   TFV +L+A + +G++ VG++
Sbjct: 288 ERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQ 347

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              +MV K G   +V   + +V++Y + G   +A     +  + +   V+W A++
Sbjct: 348 AHGLMV-KLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVD-DVVIWTAMI 400



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--LDQACWLFDHMPQ--KDVVSWNSI 364
           R G  +HGW L+ G      ++NSLI  Y    +  L  A  +F  +P   +DV SWNS+
Sbjct: 31  RAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSL 90

Query: 365 IHAHSKDH--EALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVG--ERLFSVMVE 418
           ++  S+     AL +F  M    D VLP   +F ++ +A A + S   G     F+  + 
Sbjct: 91  LNPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLP 150

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
               S  V     ++N+Y + G I +A   + ++M    + V W A++
Sbjct: 151 SSSGSNNVFVSTALLNMYCKLGAISDARR-VFDQMPHR-NAVSWAAMV 196


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 252/458 (55%), Gaps = 14/458 (3%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +++L+  +   +      + S++  C Q K +     +H  +  + L  +  + + L+ +
Sbjct: 47  LRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHM 106

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G + +A  VFD +  R   +  W  LI+GYA+     +A+ L   M      P  F
Sbjct: 107 YCKCGAVSDARHVFDGIPTRDVVS--WTYLITGYAQNDMPAEALGLLPDMLRARFRPSGF 164

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF   LKA    G   +GE++H  AV++    D +V +AL+DMYA+C  +  A  VFD +
Sbjct: 165 TFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWL 224

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA--- 312
            +K+ +S+N+++ G+   G        F  M  NGF       SS+   ++L RIGA   
Sbjct: 225 DSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVF--SALARIGALEQ 282

Query: 313 --QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
              VH  +++ G +    +AN+++ +Y+K G +  A  +FD + Q+D+V+WN+++ A ++
Sbjct: 283 GRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQ 342

Query: 371 ---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                EA+ +FE++ + G+  + +TF+S+L+AC+H G VK G++ F  M++ Y + P ++
Sbjct: 343 YGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEID 401

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HY   V+L GRAGL+ EA  + V KM  E +  VWGALL AC +H N  +G+ AA  +FE
Sbjct: 402 HYVSFVDLLGRAGLLKEAL-IFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFE 460

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           L+P++     LL  IY + G+ DD  RV +M+   G++
Sbjct: 461 LDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVK 498


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 250/450 (55%), Gaps = 14/450 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           QN          +LL +  + +++  G++LH  I    L+    +S  L+ LY+   L  
Sbjct: 18  QNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPL 77

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            + QVFD+   +++    W+S+IS +A+      A+  + +M  +GV PD   +P   KA
Sbjct: 78  FSLQVFDETPKKSSTT--WSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKA 135

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L    VG+ VH  AV+ G+  D FV ++LVDMYAKCG+I  AR +FD +  ++++S+
Sbjct: 136 CGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSW 195

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           + M+ GY      VEA  +F+  ++   D +    SS++   ++++ L +G  +HG  L+
Sbjct: 196 SGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLK 255

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEAL 375
              +    + ++LI +YSK G ++ A  +FD +P +++  WNS++     HAH++    L
Sbjct: 256 MSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGL 315

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+M   G+ P+ + F+S+L AC+H G V+ G   FS+M   YGI P  EHYA +V+L
Sbjct: 316 --FEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDL 372

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG + EA S ++++M    +  VWGALL  C +H +  M    A ++ E++  +   
Sbjct: 373 LGRAGKLQEAVS-VIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGL 431

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             LL   Y  AGR ++  R+ +ML DRG++
Sbjct: 432 HVLLSNAYAAAGRYEEAARMRKMLRDRGVK 461


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 255/461 (55%), Gaps = 13/461 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D++++ L+     G      T  SLL  C Q++AV+ G+ ++  +    +  +  I + L
Sbjct: 205 DNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNAL 264

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G + +A + F  M  R   +  WN+LI G+ + G++++A+ ++ +M  +GV P
Sbjct: 265 IGMYVKCGCMSDAWKTFKGMPIRNTKS--WNTLIDGFVQNGKHKEALTMFEEMLSDGVIP 322

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   VL   A LG ++ G  +H          D  + N+L++MYAKCGD+  A  +F
Sbjct: 323 DVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIF 382

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLR 309
           + +  +D++S+ +M+ GY+       AF++F  M +       +A+ S+L+  S    L 
Sbjct: 383 ENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALD 442

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---H 366
            G ++H ++  + V  D+ + ++L+ +Y+K G +D A  +F  M  K  ++WN++I    
Sbjct: 443 KGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLA 502

Query: 367 AHSKDHEALIYFEQME--RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
           +  +  EA+  FEQ+   RD   PD +T   +L AC H+G V  G   F++M+   GI P
Sbjct: 503 SQGQGKEAVALFEQLLKLRDPK-PDAITLKVVLCACTHVGMVDEGLHYFNLML-TLGIVP 560

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQK 484
             EHY C+V+L GRAGL+DEAY+ I +KM  + +PV+WG+LL AC +H  + +G+   Q 
Sbjct: 561 DNEHYGCIVDLLGRAGLLDEAYNFI-QKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQH 619

Query: 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + +L P++     L+  ++   G+ DDVE+V  M+  R +E
Sbjct: 620 IIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVE 660



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 214/426 (50%), Gaps = 18/426 (4%)

Query: 52  SSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL---KAVE 108
           + PT ++ N          A    ++   +  ++G++    T A++ ++       K   
Sbjct: 80  AQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRA 139

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
            G  +H L+       +  + S L+  Y     +++A +VF++M  R   +  W  +IS 
Sbjct: 140 TGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVS--WTLMISA 197

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           +A+ G++++ +    +M+ EG +P++ T   +L AC  +  +  G  V+     +G   D
Sbjct: 198 FAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEAD 257

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             + NAL+ MY KCG +  A   F  +  ++  S+N+++ G++ +G   EA  +F  M+ 
Sbjct: 258 VDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLS 317

Query: 289 NGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +G  PD + + S+L   A    L+ G  +H ++    +  D+ + NSLI +Y+K G +  
Sbjct: 318 DGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAA 377

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F++M ++D+VSW +++  + K      A   F+ M+   V+   +  VSLLSAC+ 
Sbjct: 378 AEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQ 437

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           LG++  G  + S + EK   S R + +  + +V++Y + G ID A + I  +M  + + +
Sbjct: 438 LGALDKGREIHSYIKEK---SVRTDMWLESALVDMYAKCGCIDAA-AEIFSRMRHKQT-L 492

Query: 461 VWGALL 466
            W A++
Sbjct: 493 AWNAMI 498



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 163/331 (49%), Gaps = 14/331 (4%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +VFD+M+  TA    WN +I GY       DA+ L+  M   GV PD +T   V ++ 
Sbjct: 72  ARKVFDRMAQPTAIV--WNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSS 129

Query: 205 AGLGLIR---VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           A     +    G+ VH    R GF  D FV++ L++ Y     +  AR VF+ +  +D++
Sbjct: 130 AAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVV 189

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWV 318
           S+  M++ +   G           M   G  P+ + I S+L+    +R    G  V+  V
Sbjct: 190 SWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARV 249

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
              G+E D+ I N+LI +Y K G +  A   F  MP ++  SWN++I     + K  EAL
Sbjct: 250 DEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEAL 309

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+M  DGV+PD +T VS+LS  A LG ++ G  L +  ++ + I   +     ++N+
Sbjct: 310 TMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNY-IKDHEIHCDIILQNSLINM 368

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           Y + G  D A + I+ +       V W A++
Sbjct: 369 YAKCG--DMAAAEIIFENMARRDIVSWTAMV 397



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 16/258 (6%)

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC---GDIVKARTVFDRIGN 257
           L ACA    +    ++H   VR   G D  V   LV + A      D+  AR VFDR+  
Sbjct: 25  LDACASRANL---AELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQ 81

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL------RIG 311
              I +N M+ GY      ++A ++FR M  +G  PD   ++++  +++          G
Sbjct: 82  PTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATG 141

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
             VH  V R G   DL + + LI  Y     ++ A  +F+ M ++DVVSW  +I A ++ 
Sbjct: 142 DAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQC 201

Query: 372 HE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
            +    L   ++M+ +G  P+ +T +SLLSAC  + +V  G  +++  V++YGI   V+ 
Sbjct: 202 GQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYA-RVDEYGIEADVDI 260

Query: 429 YACMVNLYGRAGLIDEAY 446
              ++ +Y + G + +A+
Sbjct: 261 RNALIGMYVKCGCMSDAW 278


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 247/447 (55%), Gaps = 13/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +    F + L+ C Q + +    +LH  +  N     + I + L+  Y+    +DEA
Sbjct: 301 GVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F  M++       W ++I G+ +    + A+ L+ QM  EGV P+ FT+  VL    
Sbjct: 361 FKLF-SMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKP 419

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
              L     ++H   ++  +     V  AL+D Y K G++V++  VF  I  KD++++++
Sbjct: 420 SSLL----SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSA 475

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRR 321
           MLTG        +A ++F  ++  G  P+    SS++    ++A+ +  G Q+H   ++ 
Sbjct: 476 MLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS 535

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G    LC++++L+ +YSK G ++ A  +F    ++D+VSWNS+I     H    +AL  F
Sbjct: 536 GKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVF 595

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           + M+  G+  D +TF+ +L+AC H G V+ GE+ F++M++ Y I  + EHY+CMV+LY R
Sbjct: 596 QIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSR 655

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG+ D+A   I+  M F ASP +W  LL AC +H N+ +G+ AA+KL  L+P++   + L
Sbjct: 656 AGMFDKAMD-IINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  I+  AG  ++   V +++ +R ++
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKVK 741



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 167/332 (50%), Gaps = 12/332 (3%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           + +DL SS   G+ V   T +  L+ C  L     G ++H     +   ++  + + L+ 
Sbjct: 91  LFKDLHSS---GLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y      ++   +FD+M  +   +  W SL+SGYA  G  ++ I L  QM+ EGV P+ 
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVS--WTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FTF  VL A A   +I  G +VH   V+ GF F  FV NAL+ MY K   +  A  VFD 
Sbjct: 206 FTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDS 265

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIG 311
           +  +D +++N M+ GY   G  +E F +F  M L G         + L   S    L   
Sbjct: 266 MVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFT 325

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHA--- 367
            Q+H  V++ G E+   I  +L+V YSK   +D+A  LF       +VV+W ++I     
Sbjct: 326 KQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQ 385

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           ++ + +A+  F QM R+GV P+H T+ ++L+ 
Sbjct: 386 NNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG 417



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 10/328 (3%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AHQ+FD+   +    +  N L+  ++      +A+ L+  +   G+  D  T    LK C
Sbjct: 57  AHQLFDETPLKDISHY--NRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L    VG +VH  +++ GF  D  V  +LVDMY K  D    R +FD +G K+++S+ 
Sbjct: 115 GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWT 174

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRR 321
           S+L+GY  +GL  E   +   M + G +P+    +++   LA+ S++  G QVH  +++ 
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G E+   + N+LI +Y K   +  A  +FD M  +D V+WN +I  ++      E    F
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M   GV      F + L  C+    +   ++L   +V K G     +    ++  Y +
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVV-KNGYEFAQDIRTALMVTYSK 353

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
              +DEA+ +     +   + V W A++
Sbjct: 354 CSSVDEAFKLF-SMADAAHNVVTWTAMI 380


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 256/470 (54%), Gaps = 41/470 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ +L++ C Q +A+E G K+H  I T+       I +++L +YA  G + +A +VFD+M
Sbjct: 89  TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEM 148

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE------------------------ 188
             R   +  WN +++GYAE+G  E+A  L+ +M E                         
Sbjct: 149 PERDVCS--WNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVL 206

Query: 189 --------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
                     +P+ FT    + A A +  IR G+++H   VR G   D  + ++L+DMY 
Sbjct: 207 YSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYG 266

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           KCG I +AR +FD+I +KD++S+ SM+  Y       E F +F  +I +   P+    S 
Sbjct: 267 KCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSG 326

Query: 301 IL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L   A+ +   +G QVHG++ R G +     ++SLI +Y+K G ++ A  + D  P+ D
Sbjct: 327 VLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPD 386

Query: 358 VVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +VS  S+I  ++   K  EAL YF+ + + G  PDH+TFV++LSAC H G V+ G   F 
Sbjct: 387 LVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFY 446

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            + EK+ ++   +HY C+V+L  R+G  ++  S++ E M  + S  +W ++L  C  +GN
Sbjct: 447 SITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSE-MPMKPSKFLWASVLGGCSTYGN 505

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + + E AAQ+LF++EP+N   +  +  IY  AG+ ++  ++ + + + G+
Sbjct: 506 IDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGI 555



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 39/297 (13%)

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           +P   T+  +++ C+    +  G+KVH      GF     + N ++ MYAKCG +V AR 
Sbjct: 84  KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARK 143

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILNGF----DPD-- 294
           VFD +  +D+ S+N M+ GY   GLL EA ++F  M          ++ G+     P+  
Sbjct: 144 VFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEA 203

Query: 295 ----------PVAISSILANA---------SLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
                     P +  +I   +           +R G ++HG ++R G++ D  + +SL+ 
Sbjct: 204 LVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMD 263

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLT 392
           +Y K G +D+A  +FD +  KDVVSW S+I  +   S+  E    F ++      P+  T
Sbjct: 264 MYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYT 323

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           F  +L+ACA L + ++G ++   M  + G  P     + ++++Y + G I+ A  ++
Sbjct: 324 FSGVLNACADLTTEELGRQVHGYMT-RVGFDPYSFASSSLIDMYTKCGNIESARHVV 379


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 249/455 (54%), Gaps = 10/455 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I+ +   ++ G         SL      L  + +G ++H       L  +  + + L+ +
Sbjct: 351 IEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDM 410

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y     I+ +  VFD+M  R      W ++I+ YA+   + +A+ ++ + ++EG++ D  
Sbjct: 411 YMKCRYIEYSAHVFDRM--RIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPM 468

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
               +L+AC+GL  I + +++H  A+R G   D  V N ++D+Y +CG++  +  +F+ +
Sbjct: 469 MIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETV 527

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGA 312
             KD++++ SM+  Y + GLL EA  +F  M      PD VA+ SIL      S L  G 
Sbjct: 528 EQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGK 587

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HS 369
           +VHG+++RR    +  I +SL+ +YS  G L  A  +F+ +  KD+V W ++I+A   H 
Sbjct: 588 EVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHG 647

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              +A+  F++M + GV PDH++F++LL AC+H   V  G+    +M+  Y + P  EHY
Sbjct: 648 HGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHY 707

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           AC+V+L GR+G  +EAY  I + M  +   VVW +LL AC +H N  +   AA +L ELE
Sbjct: 708 ACVVDLLGRSGQTEEAYEFI-KSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELE 766

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           PDN  N+ L+  ++   G+ ++ + V   + +RGL
Sbjct: 767 PDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGL 801



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 212/401 (52%), Gaps = 27/401 (6%)

Query: 41  NRITTFSSYPKSSPTPLLTNQKAFPKTK--LQALDSIIQDLESSVQNGITVQTETFASLL 98
           N    FS+ P S   P  T+ K   K     QAL      L +S   G +   E +  +L
Sbjct: 11  NPYKKFSTTPPSISPPDPTSLKQLCKEGNLRQALR-----LLTSQTPGRSPPQEHYGWVL 65

Query: 99  ETCYQLKAVEHGIKLH-RLIPTNLLRKNKG-ISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +     KAV  G+++H   + T  L  + G +++KLL +Y   G + +A  +FD MS+RT
Sbjct: 66  DLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRT 125

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQME---EEGVEPDQFTFPRVLKACAGLGLIRVG 213
            F+  WN+LI  Y   G   +A+ +Y  M      GV PD  T   VLKA    G  R G
Sbjct: 126 VFS--WNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIH 272
            +VH  AV+ G     FV NAL+ MYAKCG +  A  VF+ + + +D+ S+NSM++G + 
Sbjct: 184 CEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQ 243

Query: 273 HGLLVEAFDIFRGM---ILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G+ ++A D+FRGM   +L+      V +  +    + L +G ++H  +L+ G E ++  
Sbjct: 244 NGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNI-Q 302

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N+L+V+Y+K G++D A  +F  + +KD +SWNS++  + ++    EA+ +  +M R G 
Sbjct: 303 CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF 362

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
            PDH   VSL SA  HLG +  G+      V  Y I  R++
Sbjct: 363 QPDHACIVSLSSAVGHLGWLLNGKE-----VHAYAIKQRLD 398



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 237/487 (48%), Gaps = 56/487 (11%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           LQALD + + ++ +V   +++ + T   +L+ C +L  +  G +LH      LL+    +
Sbjct: 248 LQALD-LFRGMQRAV---LSMNSYTTVGVLQVCTELAQLNLGRELH----AALLKSGSEV 299

Query: 129 S---SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
           +   + LL +Y   G +D A +VF ++  +   +  WNS++S Y + G Y +AI    +M
Sbjct: 300 NIQCNALLVMYTKCGRVDSALRVFREIDEKDYIS--WNSMLSCYVQNGLYAEAIEFISEM 357

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
              G +PD      +  A   LG +  G++VH  A++     D  V N L+DMY KC  I
Sbjct: 358 LRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYI 417

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
             +  VFDR+  KD IS+ +++T Y      +EA +IFR     G   DP+ I SIL   
Sbjct: 418 EYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEAC 477

Query: 306 SLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           S L    +  Q+H + +R G+  DL + N +I +Y + G++  +  +F+ + QKD+V+W 
Sbjct: 478 SGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWT 536

Query: 363 SIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV-- 417
           S+I+ ++     +EAL+ F +M+   V PD +  VS+L A   L S+  G+ +   ++  
Sbjct: 537 SMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRR 596

Query: 418 ----EKYGISPRVEHYA------------------------CMVNLYGRAGLIDEAYSMI 449
               E+  +S  V+ Y+                         M+N  G  G   +A  + 
Sbjct: 597 NFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLF 656

Query: 450 VEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYG 504
              ++   +P  V + ALLYAC     V  G+     +   + LEP  EH +  ++ + G
Sbjct: 657 KRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEH-YACVVDLLG 715

Query: 505 NAGRLDD 511
            +G+ ++
Sbjct: 716 RSGQTEE 722



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 206/413 (49%), Gaps = 37/413 (8%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           S  +G+     T AS+L+          G ++H L   + L ++  +++ L+ +YA  G+
Sbjct: 155 SAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGI 214

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +D A +VF+ M +    A  WNS+ISG  + G +  A+ L+  M+   +  + +T   VL
Sbjct: 215 LDSAMRVFELMHDGRDVA-SWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVL 273

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           + C  L  + +G ++H   ++ G   +    NAL+ MY KCG +  A  VF  I  KD I
Sbjct: 274 QVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYI 332

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWV 318
           S+NSML+ Y+ +GL  EA +    M+  GF PD    V++SS + +   L  G +VH + 
Sbjct: 333 SWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYA 392

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDH-EAL 375
           +++ ++ D  + N+L+ +Y K   ++ +  +FD M  KD +SW +II  +A S  H EAL
Sbjct: 393 IKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEAL 452

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV--------------MVEKYG 421
             F + +++G+  D +   S+L AC+ L ++ + ++L                 +++ YG
Sbjct: 453 EIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYG 512

Query: 422 ISPRVEH---------------YACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
               V H               +  M+N Y  +GL++EA  +  E    +  P
Sbjct: 513 ECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQP 565



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 155/302 (51%), Gaps = 17/302 (5%)

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCG 243
           +  G  P Q  +  VL   A    +  G +VH  AV  G   G DGF+   L+ MY KCG
Sbjct: 50  QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCG 109

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPDPVAISS 300
            +  AR +FD + ++ + S+N+++  Y+  G   EA  ++R M L   +G  PD   ++S
Sbjct: 110 RVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLAS 169

Query: 301 ILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-K 356
           +L  + +    R G +VHG  ++ G++    +AN+LI +Y+K G LD A  +F+ M   +
Sbjct: 170 VLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGR 229

Query: 357 DVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           DV SWNS+I    ++    +AL  F  M+R  +  +  T V +L  C  L  + +G  L 
Sbjct: 230 DVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELH 289

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           + ++ K G    ++  A +V +Y + G +D A  +  E  E +   + W ++L +CY+  
Sbjct: 290 AALL-KSGSEVNIQCNALLV-MYTKCGRVDSALRVFREIDEKDY--ISWNSML-SCYVQN 344

Query: 474 NV 475
            +
Sbjct: 345 GL 346


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 229/442 (51%), Gaps = 51/442 (11%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           +K+LR    FG  + +H++F Q      F F  N++I G      ++++I +Y  M +EG
Sbjct: 46  NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLF--NTMIHGLVLNDSFQESIEIYHSMRKEG 103

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           + PD FTFP +LKACA L   ++G K+H   V+ G   D FV  +LV +Y KCG I  A 
Sbjct: 104 LSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAF 163

Query: 250 TVFDRIGNK--------------------------------------DLISYNSMLTGYI 271
            VFD I  K                                      D++S++SM+ GY 
Sbjct: 164 KVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYA 223

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
            +GL  EA D+F  M+  GF PD  A+  +L   A    L +G      + R     +  
Sbjct: 224 SNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPV 283

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-----HSKDHEALIYFEQMER 383
           +  +LI +Y+K G++D A  +F  M +KD+V WN+ I       H K   A   F QME+
Sbjct: 284 LGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVK--AAFGLFGQMEK 341

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ PD  TFV LL AC H G V  G + F+ M   + ++P +EHY CMV+L GRAG +D
Sbjct: 342 SGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLD 401

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA+ + V+ M  EA+ +VWGALL  C LH +  + E   ++L  LEP N  N+ LL  IY
Sbjct: 402 EAHQL-VKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIY 460

Query: 504 GNAGRLDDVERVERMLVDRGLE 525
             + + +D  ++  ++ +RG++
Sbjct: 461 SASHKWEDAAKIRSIMSERGIK 482



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 153/341 (44%), Gaps = 52/341 (15%)

Query: 73  DSIIQDLE---SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           DS  + +E   S  + G++  + TF  LL+ C +L   + GIKLH L+       +  ++
Sbjct: 87  DSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVN 146

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAF----------------------------- 160
           + L+ LY   G ID A +VFD +  +   A+                             
Sbjct: 147 TSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDG 206

Query: 161 -------PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                   W+S+I GYA  G  ++A+ L+F+M  EG  PD +    VL ACA LG + +G
Sbjct: 207 MLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG 266

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
                   R  F  +  +  AL+DMYAKCG +  A  VF  +  KD++ +N+ ++G    
Sbjct: 267 NWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMS 326

Query: 274 GLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHG-----WVLRRGVEW 325
           G +  AF +F  M  +G +PD    V +     +A L+  G Q        + L   +E 
Sbjct: 327 GHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEH 386

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
             C+ + L     + G LD+A  L   MP + + + W +++
Sbjct: 387 YGCMVDLL----GRAGFLDEAHQLVKSMPMEANAIVWGALL 423



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 164/384 (42%), Gaps = 82/384 (21%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH   +R G   D ++LN ++      G+   +  +F +    ++  +N+M+ G + +  
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL-ANASLL--RIGAQVHGWVLRRGVEWDLCIANS 332
             E+ +I+  M   G  PD      +L A A LL  ++G ++HG V++ G E D  +  S
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTS 148

Query: 333 LIVVYSKDGKLD--------------------------------------QACWLFDHMP 354
           L+ +Y K G +D                                      +AC +FD M 
Sbjct: 149 LVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGML 208

Query: 355 QKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +KD+VSW+S+I  ++ +    EAL  F +M  +G  PD    V +L ACA LG++++G  
Sbjct: 209 EKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNW 268

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI---------------------- 449
             ++M     +   V   A ++++Y + G +D A+ +                       
Sbjct: 269 ASNLMDRNEFLGNPVLGTA-LIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSG 327

Query: 450 -----------VEKMEFEASPVVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNEHN 495
                      +EK   E     +  LL AC   G V  G     + +++F L P+ EH 
Sbjct: 328 HVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEH- 386

Query: 496 FELLIKIYGNAGRLDDVERVERML 519
           +  ++ + G AG LD+  ++ + +
Sbjct: 387 YGCMVDLLGRAGFLDEAHQLVKSM 410


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 247/464 (53%), Gaps = 16/464 (3%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LD  +      +++G    +  + +LL++    +A++ G ++H  +    L  N  I + 
Sbjct: 163 LDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETG 222

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           ++ +Y   G +  A +VFDQM+ +   A  W  L+ GY + G   DA+ L+  +  EGVE
Sbjct: 223 IVNMYVKCGWLVGAKRVFDQMAVKKPVA--WTGLMVGYTQAGRARDALKLFVDLITEGVE 280

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D F F  VLKACA L  +R G+++H    + G   +  V   LVD Y KC     A   
Sbjct: 281 WDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRA 340

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM------ILNGFDPDPV-AISSILAN 304
           F  I   + +S++++++GY       EA   F+ +      +LN F    +    S+LA+
Sbjct: 341 FQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLAD 400

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            +   IG QVH   ++R +       ++LI +YSK G LD A  +F+ M   D+V+W + 
Sbjct: 401 CN---IGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAF 457

Query: 365 IHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  H+      EAL  FE+M   G+ P+ +TF+++L+AC+H G V+ G+     M+ KY 
Sbjct: 458 ISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYN 517

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           ++P ++HY CM+++Y R+GL+DEA   + + M FE   + W   L  C+ H N+ +G+ A
Sbjct: 518 VAPTIDHYDCMIDIYARSGLLDEALRFM-KNMPFEPDAMSWKCFLSGCWTHKNLELGKIA 576

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++L +L+P++   + L   +Y  AG+ ++   V +++ +R L+
Sbjct: 577 GEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLK 620



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 213/409 (52%), Gaps = 16/409 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++V   ++  L E C +L+++ HG  LH  +   +   +  + + +L++Y   G +++A
Sbjct: 76  GVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDA 135

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+MS+  A +    ++IS YAE G  + A+ L+ +M E G +P    +  +LK+  
Sbjct: 136 DKLFDEMSDLNAVSR--TTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLV 193

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               + +G ++H   +R G   +  +   +V+MY KCG +V A+ VFD++  K  +++  
Sbjct: 194 NPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTG 253

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
           ++ GY   G   +A  +F  +I  G + D    S +L A ASL  LR G Q+H  V + G
Sbjct: 254 LMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLG 313

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFE 379
           +E ++ +   L+  Y K    + AC  F  + + + VSW++II  +   S+  EA+  F+
Sbjct: 314 LECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFK 373

Query: 380 QME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +  ++ V+ +  T+ S+  AC+ L    +G ++ +  +++  I  +    A ++ +Y +
Sbjct: 374 SLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESA-LITMYSK 432

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
            G +D+A+  + E M+     V W A +     +GN     + A +LFE
Sbjct: 433 CGCLDDAHE-VFESMD-NPDIVAWTAFISGHAYYGNA----SEALRLFE 475



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
           +K+ T   +I +K     N  L     HG L EAF+ F+ M   G      +   +    
Sbjct: 32  LKSSTSSVKISHKQGQVENLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEAC 91

Query: 306 SLLRIGAQVHGWVL----RRGVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             LR  +  HG +L    R G+E   + + N ++ +Y + G L+ A  LFD M   + VS
Sbjct: 92  RELR--SLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVS 149

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
             ++I A+++     +A+  F +M   G  P    + +LL +  +  ++ +G ++ + ++
Sbjct: 150 RTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVI 209

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            + G+         +VN+Y + G +  A   + ++M  +  PV W  L+
Sbjct: 210 -RAGLCSNASIETGIVNMYVKCGWLVGA-KRVFDQMAVK-KPVAWTGLM 255


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 256/491 (52%), Gaps = 20/491 (4%)

Query: 44  TTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
             F   P+ S     +   A+ +T     D ++      +  GI   + TF   L+ C  
Sbjct: 39  NVFEKMPQRSINAWNSMIIAYSRTNYP--DEVLNLYYRMISEGIKPDSSTFTVTLKACSS 96

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           L  ++ G     +I    +    G    + S +L LYA  G +D+A  VFD+M  R   +
Sbjct: 97  LMDLDMG----EIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVS 152

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             W ++I+G+A+ G   DAI +Y  M++E  E D      +++AC  LG  + G  VH  
Sbjct: 153 --WTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGH 210

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            VR     D  +  +L+DMYAK G +  A  VF+ I  K +IS+ ++++G+  +G   + 
Sbjct: 211 MVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKT 270

Query: 280 FDIFRGMILNGFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
                 M  +GF PD V+ ISS+ A A +  L++G  +HG +++R +  D     +LI +
Sbjct: 271 LASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKR-LYLDKVSGTALIDM 329

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y+K G L  A  LFD +  +D++ WN++I +   H    EAL  F +M+   + PDH TF
Sbjct: 330 YAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATF 389

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            SLLSAC+H G V+ G+  F V+++K  I P  +HYACMV+L  RAG ++EAY +I E M
Sbjct: 390 ASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLI-ESM 448

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
             +    +W ALL  C  H N+ +GE  A+K+ E  PD+   + L+   +  A + DD  
Sbjct: 449 HIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDAA 508

Query: 514 RVERMLVDRGL 524
              +++ + G+
Sbjct: 509 VFRKIMKNTGM 519



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 250/457 (54%), Gaps = 49/457 (10%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE---AHQVFDQMSNRTAFAFPWNSLISG 168
           ++H LI T  L  N   ++ + +L A++G I+    A  VF++M  R+  A  WNS+I  
Sbjct: 3   QIHALILTTGLFFND--ANSIAQLIASYGRINNIIPARNVFEKMPQRSINA--WNSMIIA 58

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y+     ++ + LY++M  EG++PD  TF   LKAC+ L  + +GE +   AV FG+GFD
Sbjct: 59  YSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFD 118

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
            FV+++++++YAK G + KA+ VFD++  +D++S+ +M+TG+   G  ++A DI+R M  
Sbjct: 119 VFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQK 178

Query: 289 NGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
              + D V +  ++   + L   + G  VHG ++RR +  D  +  SLI +Y+K+GKL+ 
Sbjct: 179 ERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLEL 238

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +F+ +P K V+SW ++I   +++   ++ L    +M+  G  PD ++ +S LSACA 
Sbjct: 239 ASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQ 298

Query: 403 LGSVKVG--------ERLF------SVMVEKYG--------------ISPR-VEHYACMV 433
           +G++KVG        +RL+      + +++ Y               I PR +  +  M+
Sbjct: 299 VGNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMI 358

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFE---L 488
           + YG  G   EA S+ ++  E   +P    + +LL AC   G V  G+     L +   +
Sbjct: 359 SSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKI 418

Query: 489 EPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDRGL 524
           +P  +H +  ++ +   AG++++  + +E M +  GL
Sbjct: 419 QPSEKH-YACMVDLLSRAGQVEEAYQLIESMHIKPGL 454


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 12/465 (2%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISS 130
            D  +Q L   V  G+     TFAS L  C +L+ ++ G ++H  +I  + L  N  ++S
Sbjct: 100 FDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVAS 159

Query: 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-G 189
            L+ +YAT   + +A QVFD + +       WN++I GYA+ G  E+A+ L+ +ME E G
Sbjct: 160 ALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAG 219

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P + T   VL ACA        E VH   V+ G   + FV NAL+DMYA+ G    AR
Sbjct: 220 FVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 279

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL---NGFDPDPVAISSILANAS 306
            +F  +   D++S+N+++TG +  G + +AF + R M      G  P+ + + ++L   +
Sbjct: 280 RIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCA 339

Query: 307 LLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +L     G ++HG+ +R  ++ D+ + ++L+ +Y+K G L  +  +FD +P+++ ++WN 
Sbjct: 340 ILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNV 399

Query: 364 IIHA---HSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           +I A   H    EA + F++M   G   P+ +TF++ L+AC+H G V  G +LF  M   
Sbjct: 400 LIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERD 459

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +G+ P  +  AC+V++ GRAG +DEAY+M+      E     W  +L AC LH NV +GE
Sbjct: 460 HGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGE 519

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            A ++L ELEP+   ++ LL  IY  AG+      V   +  RG+
Sbjct: 520 IAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGV 564



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 202/410 (49%), Gaps = 22/410 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHR-----LIPTNLLRKNKGIS-SKLLRLY 136
           +  G  + + T  S+L     L A    ++L R      +   LL  ++  + + LL +Y
Sbjct: 2   LAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMY 61

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
           A  GL+ +A ++F   +        WN+++S   + G +++A+   + M   GV PD  T
Sbjct: 62  ARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVT 121

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           F   L AC+ L L+ VG ++H   ++      + FV +ALVDMYA    + KAR VFD +
Sbjct: 122 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 181

Query: 256 --GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLR 309
               K L  +N+M+ GY   G+  EA  +F  M    GF P    ++S+L   A +    
Sbjct: 182 PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFA 241

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---- 365
               VHG+V++RG+  +  + N+L+ +Y++ GK D A  +F  +   DVVSWN++I    
Sbjct: 242 GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCV 301

Query: 366 -HAHSKDHEALIY-FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
              H  D   L    +Q+E  GV+P+ +T ++LL  CA L +   G+ +    V ++ + 
Sbjct: 302 VQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV-RHALD 360

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             V   + +V++Y + G +  A S  V       + + W  L+ A  +HG
Sbjct: 361 TDVAVGSALVDMYAKCGCL--ALSRAVFDRLPRRNTITWNVLIMAYGMHG 408


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 223/419 (53%), Gaps = 41/419 (9%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKA 203
           A  +FD+M +R   +  WNS+I+GY++ G YED   LY +M +  G+ P+  T   VL+A
Sbjct: 193 ARILFDRMHDRDIVS--WNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQA 250

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    +  G KVH   +      D    N+L+ +YAKCG +  AR +F+ + NKD ++Y
Sbjct: 251 CAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTY 310

Query: 264 NSMLTGYIHHGLLVEAFDIFR---------------GMILN----------------GFD 292
            S+++GY+ HG + +A D+FR               G++ N                GF 
Sbjct: 311 GSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFR 370

Query: 293 PDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           P+ V +SSIL   S    L+ G  +H + +R G   ++ +A S+I  Y+K G L  A W+
Sbjct: 371 PNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWV 430

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD    + ++ W +II A   H   + AL  F  M  +G  PD +TF ++L+ACAH G V
Sbjct: 431 FDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMV 490

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
               ++F  M  KYG  P VEHYACMV +  RAG++ EA   I  KM  E +  VWGALL
Sbjct: 491 NEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFIC-KMPIEPNAKVWGALL 549

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
               + G+V +G+     LF +EP+N  N+ ++  +Y  AGR ++ E +   +   GL+
Sbjct: 550 NGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLK 608



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 214/436 (49%), Gaps = 51/436 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F  L++ C   + +    +LH  I  + L  +  ++SKL+  Y+    + EAH+VFD++
Sbjct: 36  AFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKI 95

Query: 153 SNRTAFAFPWNSLISGYAELGEY---EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
            ++  F+  WN+++ GY+    +    + ++         ++PD FT   VLKA + L  
Sbjct: 96  LDKNIFS--WNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFP 153

Query: 210 IRV-GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
             +  ++V    +R GF  D FV+NAL+  Y++C +   AR +FDR+ ++D++S+NSM+ 
Sbjct: 154 DSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIA 213

Query: 269 GYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
           GY   G   +  +++R M+   G  P+ V + S+L   A  + L  G +VH +++ R VE
Sbjct: 214 GYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVE 273

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM 381
            D+   NSLI +Y+K G LD A  LF+ M  KD V++ SI+     H    +A+  F +M
Sbjct: 274 MDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREM 333

Query: 382 E-------------------RDGVL------------PDHLTFVSLLSACAHLGSVKVGE 410
           +                    +G+L            P+ +T  S+L   +   ++K G+
Sbjct: 334 KNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGK 393

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
            + +  + + G +  +     +++ Y + G +  A    V     + S +VW A++ A  
Sbjct: 394 AIHAYAI-RNGYAHNIYVATSIIDAYAKLGFLRGA--QWVFDQSKDRSLIVWTAIISAYS 450

Query: 471 LHGNVCMGETAAQKLF 486
            HG+      AA +LF
Sbjct: 451 AHGDA----NAALRLF 462



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 178/409 (43%), Gaps = 84/409 (20%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NG+TV      S+L+ C Q   +  G+K+H+ I    +  +    + L+ LYA  G +D 
Sbjct: 240 NGVTV-----VSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDY 294

Query: 145 AHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEY 175
           A ++F++MSN+    +                              WN++ISG  +    
Sbjct: 295 ARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCN 354

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
           E  + L  +M+E G  P+  T   +L   +    ++ G+ +H  A+R G+  + +V  ++
Sbjct: 355 EGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSI 414

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +D YAK G +  A+ VFD+  ++ LI + ++++ Y  HG    A  +F  M+ NG  PDP
Sbjct: 415 IDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDP 474

Query: 296 VAISSILANASLLRIGAQVHGW------VLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           V  +++LA  +    G     W       L+ G +  +     ++ V S+ G L +A   
Sbjct: 475 VTFTAVLAACA--HSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEF 532

Query: 350 FDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
              MP                               + P+   + +LL+  +  G V++G
Sbjct: 533 ICKMP-------------------------------IEPNAKVWGALLNGVSVSGDVELG 561

Query: 410 ----ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
               + LF++  E  G      +Y  M NLY +AG  +EA + I EKM+
Sbjct: 562 KFVCDHLFNMEPENTG------NYVIMANLYSQAGRWEEAEN-IREKMK 603



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 145/294 (49%), Gaps = 14/294 (4%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D   F R+++ C+   L+R  +++H   V      D F+ + L+  Y+K   + +A  VF
Sbjct: 33  DYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVF 92

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEA---FDIFRGMILNGFDPDPVAISSILANASLLR 309
           D+I +K++ S+N+ML GY  H + V                  PD   I+ +L   S+L 
Sbjct: 93  DKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLF 152

Query: 310 ----IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
               +  +V  +VLR G + D+ + N+LI  YS+  +   A  LFD M  +D+VSWNS+I
Sbjct: 153 PDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMI 212

Query: 366 HAHSK----DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
             +S+    +    +Y + ++  G+ P+ +T VS+L ACA    +  G ++   ++E+  
Sbjct: 213 AGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIER-K 271

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           +   V  +  ++ LY + G +D A  +  E        V +G+++     HG V
Sbjct: 272 VEMDVSAHNSLIGLYAKCGSLDYARELFNEMS--NKDEVTYGSIVSGYMTHGFV 323


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 247/446 (55%), Gaps = 8/446 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G    + TF  ++ +C +L  +E G ++HR +    +  +  + S L+ +Y   G ++ A
Sbjct: 202 GFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMA 261

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF+++  + A    WN++I+GY+  G+    I L  +M +EG +P   T   ++ A +
Sbjct: 262 KEVFEKIPRKNAIT--WNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASS 319

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +R G+ +H   +R     D F+  +L+D Y KCG +  A T+F  I   +++S+N 
Sbjct: 320 RSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNV 379

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRG 322
           M++G++  G  ++A  I+  M  +   PD +  SS L+  S L     G ++H  ++   
Sbjct: 380 MISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHK 439

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +E +  +  +L+ +Y+K G +D+A  LF  +P++D+VSW S+I A   H +  EAL  F+
Sbjct: 440 LEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFD 499

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M++  V  D +TF+++LSAC+H G V  G   F+ MV +Y I P +EHY+C+++L GRA
Sbjct: 500 EMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRA 559

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EAY ++    E  +   +   L  AC LH N  +G    + L E++PD+   + LL
Sbjct: 560 GRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILL 619

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             +Y +  + D+V +V R + + GL+
Sbjct: 620 SNMYASVNKWDEVRKVRRKMKELGLK 645



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 237/478 (49%), Gaps = 50/478 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  +L+ C  L  V +G ++H  +    L  +  + S L+ +YA      +A ++FD+ 
Sbjct: 108 TYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEF 167

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WN++IS Y + G+ E A+  + +M+E G EP+  TF  V+ +C  L  +  
Sbjct: 168 PQRDVGC--WNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLER 225

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH + +      D FVL+ALVDMY KCG +  A+ VF++I  K+ I++N+M+TGY  
Sbjct: 226 GKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSL 285

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
            G      ++   M   G  P  + ++SI+  +S    LR G  +HG++LR  ++ D+ I
Sbjct: 286 KGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFI 345

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DH-EALIYFEQMERDGV 386
             SLI  Y K G +  A  +F  + + +VVSWN +I  H    +H +AL  ++ M+   V
Sbjct: 346 DVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHV 405

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA- 445
            PD LTF S LSAC+ L ++  G  L   ++  + +         ++++Y + G +DEA 
Sbjct: 406 KPDALTFSSTLSACSQLAALDKGRELHYCII-NHKLEANEIVMGALLDMYAKCGDVDEAR 464

Query: 446 --------------YSMI------------------VEKMEFEASPVVWGALLYACYLHG 473
                          SMI                  ++K+   A  V + A+L AC   G
Sbjct: 465 KLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAG 524

Query: 474 NVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD----VERVERMLVDRGL 524
            V  G     ++   ++++P  EH +  LI + G AGRL +    ++R +    D GL
Sbjct: 525 LVDEGYMYFNEMVVQYDIKPGIEH-YSCLIDLLGRAGRLHEAYEILQRSKETRSDIGL 581



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 194/389 (49%), Gaps = 11/389 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S L TC   K ++ G  +H+ I +   + N  +S  L+  Y +      A  VF Q 
Sbjct: 5   TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF-QT 63

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIR 211
           ++       WN+L+S Y     + +A+ L+ Q+     V PD +T+P VLKAC GLG + 
Sbjct: 64  NDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVI 123

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G ++H   ++ G  +D FV ++L++MYAKC   V A  +FD    +D+  +N++++ Y 
Sbjct: 124 YGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYF 183

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
             G    A   F  M   GF+P+ V  + ++++ +    L  G +VH  ++ R +  D  
Sbjct: 184 KDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAF 243

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDG 385
           + ++L+ +Y K G L+ A  +F+ +P+K+ ++WN++I  +S   ++    E   +M  +G
Sbjct: 244 VLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEG 303

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
             P  +T  S++ A +    ++ G+ +   ++ +  I   +     +++ Y + G +  A
Sbjct: 304 TKPTLMTLTSIIYASSRSVQLRHGKFIHGYIL-RNRIDVDIFIDVSLIDFYFKCGYVSSA 362

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGN 474
            ++     + E   V W  ++    + GN
Sbjct: 363 ETIFRTISKNEV--VSWNVMISGHVMVGN 389


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 144/404 (35%), Positives = 227/404 (56%), Gaps = 12/404 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ LY   G   +A +VFD+M++R   +  W +L+S +   G + +A+ L  QM+ 
Sbjct: 150 VRNALVTLYGVCGECGDARRVFDEMASRDVVS--WTALVSAFVRGGRFAEALVLVGQMD- 206

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             V P++ T   VL AC  LG  R G+ VH   +R        V NA++DMY KC  +  
Sbjct: 207 --VVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDL 264

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS- 306
           AR VFDR+  +D+IS+  M++G +   L  +A ++F  M  +   PD V +S++L+  + 
Sbjct: 265 ARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTS 324

Query: 307 --LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L  G  VH ++ R+G+EWD+ +  SL+ +Y+K G L+ +  +F  MP K++ SWN++
Sbjct: 325 LGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNAL 384

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I+    H    EAL +F++M   G+ P+ ++F+ +L AC H G V+ G +LF  M   Y 
Sbjct: 385 INGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYK 444

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           +SP  EHY  +V+L GRAGLI EAYS + + M    +   WGALL AC  H  V   +  
Sbjct: 445 LSPWEEHYGSVVDLLGRAGLIHEAYS-VTKAMPMRPAVFTWGALLSACQAHRQVDFSQQI 503

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + + ELE      + LL  IY    R  DV+RV  ++ ++GL+
Sbjct: 504 LRHVHELESSESGVYALLSNIYAVNHRWADVKRVRGLMSEKGLQ 547



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 167/334 (50%), Gaps = 22/334 (6%)

Query: 157 AFAFPWNSLISGYAELGEYEDAI----ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           A A P+N+LIS     GE   A     AL      E   PD +T P  LKACA LG    
Sbjct: 66  ASAHPFNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAGGD 125

Query: 213 ------GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
                 G +VH  A + GF     V NALV +Y  CG+   AR VFD + ++D++S+ ++
Sbjct: 126 DGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTAL 185

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGV 323
           ++ ++  G   EA  +   M      P+   ++ +L     L   R G  VHGW LRR  
Sbjct: 186 VSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRES 242

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQ 380
           +  L + N+++ +Y K  KLD A  +FD +  +DV+SW  +I    +     +AL  F +
Sbjct: 243 DLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNE 302

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M++  V PD +   ++LSAC  LG+++ G R     +E+ GI   V     +V++Y + G
Sbjct: 303 MQKSRVKPDKVVLSTVLSACTSLGALESG-RWVHEYIERKGIEWDVHVGTSLVDMYAKCG 361

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            ++ + S I  KM  + +   W AL+    LHG+
Sbjct: 362 CLETSLS-IFRKMPLK-NLSSWNALINGFALHGH 393



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 149/308 (48%), Gaps = 32/308 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG----ISSKLLRLYATFGLIDEAHQV 148
           T A +L  C +L A   G  +H       LR+       + + +L +Y     +D A +V
Sbjct: 213 TLACVLVACGRLGAARAGKAVHGWY----LRRESDLKLIVGNAVLDMYVKCEKLDLARRV 268

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD++  R   +  W  +ISG  +      A+ ++ +M++  V+PD+     VL AC  LG
Sbjct: 269 FDRLLVRDVIS--WTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLG 326

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +  G  VH    R G  +D  V  +LVDMYAKCG +  + ++F ++  K+L S+N+++ 
Sbjct: 327 ALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALIN 386

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
           G+  HG   EA + F  M+ +G  P+ V+         ++ +GA  H  +++ G++    
Sbjct: 387 GFALHGHGREALEHFDRMVASGLAPNEVSF--------IIVLGACCHSGLVQEGLQLFES 438

Query: 329 IAN------------SLIVVYSKDGKLDQACWLFDHMPQKDVV-SWNSIIHAHSKDHEAL 375
           + N            S++ +  + G + +A  +   MP +  V +W +++ A  + H  +
Sbjct: 439 MKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSA-CQAHRQV 497

Query: 376 IYFEQMER 383
            + +Q+ R
Sbjct: 498 DFSQQILR 505


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 212/373 (56%), Gaps = 6/373 (1%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           +F ++SL    A  G    AIA Y  +    +    FTF  V KACA L  +R G  +H 
Sbjct: 70  SFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHA 129

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
            ++  GFG D FVL ALV +Y+KCG +  AR +FD I ++ ++++N+M++GY  +GL   
Sbjct: 130 HSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAER 189

Query: 279 AFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
              +++ M      PD    VA  S  A A  L +G +V   V+   ++  + + ++L+ 
Sbjct: 190 GIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVN 249

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLT 392
           +Y++ G +D+A   FD + +++VV+W S+I     H    EA+  F  M  +G  P+H+T
Sbjct: 250 MYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVT 309

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           FV++LSACAH G V  G   F+ M   YG+ PRVEHY  MV+++GRAGL+DEA   I + 
Sbjct: 310 FVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDY 369

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
           M  E  P VW A+L AC +H N  +G   A++L  LEP+N     LL  IY  +G++  V
Sbjct: 370 MPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHV 429

Query: 513 ERVERMLVDRGLE 525
           E+V   ++ R L+
Sbjct: 430 EKVRNTMIKRRLK 442



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 172/341 (50%), Gaps = 22/341 (6%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF ++ + C  L A+  G  +H          ++ + + L+ LY+  G +  A ++FD +
Sbjct: 107 TFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAI 166

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +R+  A  WN++ISGY + G  E  I +Y +M+     PD  TF   L ACA  G + +
Sbjct: 167 RDRSVVA--WNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDL 224

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +V    V        F+ +ALV+MYA+CG + KAR  FD +  ++++++ SM+ GY  
Sbjct: 225 GREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGM 284

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIG-------AQVHGWVLRRG 322
           HG   EA  +F  M   G  P+    VA+ S  A+A L+  G        +V+G V R  
Sbjct: 285 HGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPR-- 342

Query: 323 VEWDLCIANSLIVVYSKDGKLDQAC-WLFDHMP-QKDVVSWNSIIHAHSKDHEALIYFEQ 380
           VE   C   S++ ++ + G LD+A  ++ D+MP +     W +++ A        +  E 
Sbjct: 343 VE-HYC---SMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEV 398

Query: 381 MERDGVL-PDHLTFVSLLSACAHL-GSVKVGERLFSVMVEK 419
            ER   L P++ ++  LLS    L G +   E++ + M+++
Sbjct: 399 AERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKR 439


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 252/457 (55%), Gaps = 15/457 (3%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           ++ +E+  +N ++    T++ L++ C    AV+    +H  + +N       + + L+ +
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y  FGL+DEA  +FD+M +R   +  W ++IS Y+       A+     M  EGV P+ +
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVS--WTTMISAYSNSNLNHKALDFLILMLREGVRPNMY 118

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T+  VL+AC GL  +R   ++H   ++ G   D FV +AL+D Y+K G+   A  VF+ +
Sbjct: 119 TYSSVLRACDGLLNLR---QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM 175

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
              DL+ +NS++ G+  +    E   +++ M    F  D   ++S+L      +LL +G 
Sbjct: 176 ITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGR 235

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIHAHSKD 371
           QVH  VL+   + DL + N+L+ +Y K G L+ A  LF  M  +KDV+SW+++I   +++
Sbjct: 236 QVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQN 293

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               +AL  FE M+  G  P+++T + +L AC+H G V  G   F  M E +GI P  EH
Sbjct: 294 GFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREH 353

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           Y C+++L GRAG +DEA  +I E M  E   V W  LL AC +H NV +   AA+++ +L
Sbjct: 354 YGCIIDLLGRAGKLDEAVKLIHE-MNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKL 412

Query: 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +P +   + LL  IY N+ + +DV  V R +  RG++
Sbjct: 413 DPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVK 449


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 229/436 (52%), Gaps = 22/436 (5%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S L  C  L  V+   ++H  +    L +   +  KL+  ++    +  A  VF+Q+ + 
Sbjct: 22  SDLHRCSSLNQVK---QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
               +  N+LI  +    E   A +++F+M++ GV  D FT+P +LKAC+G   +RV E 
Sbjct: 79  DVLLY--NTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEM 136

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H    + GF  D FV N+L+D Y K G++ +AR +FD +  +D +S+N++L GY+  G 
Sbjct: 137 IHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGE 196

Query: 276 LVEAFDIFRGMILNGF-------------DPDPVAISSILANASLLRIGAQVHGWVLRRG 322
           +  AF++F  M                  D   ++I S  A + LL +G +VH  + R  
Sbjct: 197 MNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTR 256

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
            +    ++N+LI +Y+K G L+ A  +F  M +KDVVSWN+II     H    +AL  F 
Sbjct: 257 FKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFS 316

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+ +G +PD +TFV +L AC H G V  G   F  M   YG+ P VEHY CMV+L GR 
Sbjct: 317 RMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRG 376

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EA+ + V  M  E + ++WG LL AC +H    + E    +L + E  +  N  +L
Sbjct: 377 GRLKEAFRL-VHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSML 435

Query: 500 IKIYGNAGRLDDVERV 515
             IY  AG  D+   +
Sbjct: 436 SNIYAAAGDWDNFANI 451



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           S+++ G+     T  S+L  C     +  G ++H  I     + +  +S+ L+ +YA  G
Sbjct: 216 STMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCG 275

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            ++ A  +F  M  +   +  WN++I G A  G  E A+ L+ +M+ EG  PD+ TF  V
Sbjct: 276 SLENALSIFHGMVRKDVVS--WNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGV 333

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA-RTVFDRIGN 257
           L AC   G +  G   +  A+   +G    V     +VD+  + G + +A R V      
Sbjct: 334 LCACTHAGFVDEGLH-YFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLE 392

Query: 258 KDLISYNSMLTGYIHH---GLLVEAFD 281
            + I + ++L     H   GL  E FD
Sbjct: 393 PNAIIWGTLLGACRMHSATGLAEEVFD 419


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 247/447 (55%), Gaps = 42/447 (9%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI     T+  +L+     + +  G+++H  +    L  N  + + L+ +Y   G + E
Sbjct: 131 HGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVE 190

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A +V DQM  R   +  WNSL++G A  G+++DA+ +  +ME  G++PD  T   +L A 
Sbjct: 191 ACRVLDQMPCRDVVS--WNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAV 248

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                        LD V F                         + +F ++ NK L+S+N
Sbjct: 249 T---------NTCLDNVSF------------------------VKEMFMKLANKSLVSWN 275

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
            M+  Y+++ +  EA DIF  M  +  DPD ++I+S+L    + S L +G ++H +V+R+
Sbjct: 276 VMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK 335

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYF 378
            ++ +L + N+LI +Y+K G L+ A  +FD M  +DVVSW S+I A+    K  +A+  F
Sbjct: 336 RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLF 395

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M+  G+ PD + FVS+LSAC+H G +  G   F +M E+  I PR+EH+ CMV+L GR
Sbjct: 396 SRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGR 455

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG +DEAY  I ++M  E +  VWGALL AC ++ N+ +G  AA +LF+L P+    + L
Sbjct: 456 AGQVDEAYGFI-KQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVL 514

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  IY  AGR +DV  V  ++  +G++
Sbjct: 515 LSNIYAKAGRWEDVTTVRSIMKTKGIK 541



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 204/418 (48%), Gaps = 46/418 (11%)

Query: 62  KAFPKTK-LQALDSIIQDLESSVQNGITVQTETFA-SLLETCYQLKAVEHGIKLHRLIPT 119
           + FP  K LQ L   IQ  + + QN   V TE     +L+    +K ++   KLH  I  
Sbjct: 9   RHFPAVKQLQTLVLSIQKPKFTQQN--VVLTENLCGQILDKNPDIKYLK---KLHSKICI 63

Query: 120 NL-LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
           +  L  N  +  KL+R YA  G       +FD++  +    F  N +I  Y     Y DA
Sbjct: 64  DHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFF--NVMIRSYVNNHLYSDA 121

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
           + ++  M   G++PD +T+P VLKA +G   + VG ++H   VR G   + FV N L+ M
Sbjct: 122 LLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISM 181

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           Y KCG +V+A  V D++  +D++S+NS++ G   +G   +A ++ + M L G  PD   +
Sbjct: 182 YGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTM 241

Query: 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           +S+L   +                   + C+ N   V + K+        +F  +  K +
Sbjct: 242 ASLLPAVT-------------------NTCLDN---VSFVKE--------MFMKLANKSL 271

Query: 359 VSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSWN +I  +   S   EA+  F QME   V PD ++  S+L AC  L ++ +G R+   
Sbjct: 272 VSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEY 331

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +V K  + P +     ++++Y + G ++ A   + ++M+F    V W +++ A  ++G
Sbjct: 332 VVRKR-LQPNLLLENALIDMYAKCGCLEYARE-VFDQMKFR-DVVSWTSMISAYGMNG 386


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 249/454 (54%), Gaps = 22/454 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +QNG +    TF  +L+ C  +     G  +H  I  +    N  +++ LL +Y     +
Sbjct: 99  LQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNM 158

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           +   +VFD++      A  W  LI+GY    +  +A+ ++ +M   GVE ++ T    L 
Sbjct: 159 ESGLKVFDKIPKWNVVA--WTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALI 216

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL---------NALVDMYAKCGDIVKARTVFD 253
           ACA    +  G  VH    + G+  D FV           A+V+MYAKCG +  AR +F+
Sbjct: 217 ACARCRDVDTGRWVHERVCKAGY--DPFVFASNSNVILATAIVEMYAKCGWLNVARELFN 274

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRI 310
           ++  ++++++N M+  Y  +    EA  +F  M+ NGF PD    +++ S+ A   +L +
Sbjct: 275 KMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLAL 334

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH-MPQKDVVSWNSIIHA-- 367
           G  VH ++L+  +  D+ +A +L+ +Y+K+G+L  A  +F++ + +KDVV W S+I+A  
Sbjct: 335 GETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALA 394

Query: 368 -HSKDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            H   +EAL  F+ M+ D  L PDH+T++ +L AC+H+G V+  ++ F++M + YGI P 
Sbjct: 395 IHGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPE 454

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
            EHY+CMV+L  RAG   EA  ++ E M    +  +WGALL  C +H N+ +      +L
Sbjct: 455 KEHYSCMVDLLSRAGHFREAEKLM-ETMSIRPNIAIWGALLNGCQIHENIPVASQVKVRL 513

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            ELEP     + LL  IY N+G+ ++V R  +M+
Sbjct: 514 AELEPIQSGIYALLSNIYANSGKWEEVNRTRKMM 547



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 204/407 (50%), Gaps = 33/407 (8%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +   T  SLL  C  L   +    L    PT        I++K++ L        ++H  
Sbjct: 2   IHPNTILSLLPKCKTLLQFKTSHALILTTPTT-------INTKIIPLSKLIDFCVDSH-- 52

Query: 149 FDQMSNRTAFAFP---------WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           FD+  N     F          +NS+I GYA+      ++ LY QM + G  PD FTFP 
Sbjct: 53  FDEYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPF 112

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VLKAC+ +     G+ VH   ++ GF  + +V   L++MY +C ++     VFD+I   +
Sbjct: 113 VLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWN 172

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHG 316
           ++++  ++ GY+ +    EA ++F+ M   G + + V + + L   +  R    G  VH 
Sbjct: 173 VVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHE 232

Query: 317 WVLRRGVE-------WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            V + G +        ++ +A +++ +Y+K G L+ A  LF+ MP++++V+WN +I+A++
Sbjct: 233 RVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYN 292

Query: 370 ---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
              + +EAL  F  M  +G  PD  TF+S+LS CA    + +GE + + ++ K  ++  +
Sbjct: 293 QYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLL-KSNMAKDI 351

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
                ++++Y + G +  A  +    +E +   V+W +++ A  +HG
Sbjct: 352 ALATALLDMYAKNGELGSAQKIFNNSLE-KKDVVMWTSMINALAIHG 397


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 217/374 (58%), Gaps = 8/374 (2%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
            F + ++I GY     +E A+  Y +M E G+EPD FT+P +LKAC  L  IR G+++H 
Sbjct: 98  TFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQIHG 157

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              + G   D FV N+L++MY +CG++  + TVF+++  K   S++SM +  +  G+  E
Sbjct: 158 HVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSE 217

Query: 279 AFDIFRGMI----LNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334
              +FR M     L   +   V+  S  AN   L +G  +HG++LR   E ++ +  SL+
Sbjct: 218 CLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLV 277

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL 391
            +Y K G +D A  +F  M +++ ++++++I     H +   AL  F +M ++G+ PDH+
Sbjct: 278 DMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHV 337

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            +VSLL+AC+H G VK G R+F  M+++  + P  EHY C+V+L GRAGL++EA   I +
Sbjct: 338 VYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI-Q 396

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            +  E + VVW + L  C +H N+ +G+ AAQ+L +L   N  ++ L+  +Y  A   DD
Sbjct: 397 SIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDD 456

Query: 512 VERVERMLVDRGLE 525
           V R    +  +GL+
Sbjct: 457 VARSRTEIAIKGLK 470



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 150/290 (51%), Gaps = 10/290 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ GI     T+  LL+ C +LKA+  G ++H  +    L  +  + + L+ +Y   G +
Sbjct: 125 MERGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEM 184

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVL 201
           + +  VF+++  ++A +  W+S+ S    +G + + + L+ +M  E  ++ ++      L
Sbjct: 185 ELSSTVFEKLEFKSAAS--WSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSAL 242

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            ACA  G + +G  +H   +R     +  V  +LVDMY KCG I  A  +F ++  ++ +
Sbjct: 243 SACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNL 302

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           +Y++M++G+  HG    A  +F  MI  G +PD V   S+L   +++ L++ G +V G +
Sbjct: 303 TYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEM 362

Query: 319 LRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSII 365
           L+ G VE        L+ +  + G L++A      +P  Q DVV W S +
Sbjct: 363 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVV-WRSFL 411



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 18/257 (7%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A ++F  I +     + +M+ GY++      A   +  M+  G +PD      +L   + 
Sbjct: 86  AASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTR 145

Query: 308 L---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L   R G Q+HG V + G+E D+ + NSLI +Y + G+++ +  +F+ +  K   SW+S+
Sbjct: 146 LKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSM 205

Query: 365 IHA---HSKDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
             A        E L+ F +M R+  L  +    VS LSACA+ G++ +G  +   ++   
Sbjct: 206 FSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNI 265

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
                +     +V++Y + G ID A   I +KME + + + + A++    LHG    GE+
Sbjct: 266 S-ELNIIVKTSLVDMYVKCGCIDNALH-IFQKME-KRNNLTYSAMISGFALHGE---GES 319

Query: 481 AAQKLFE-----LEPDN 492
           A +   E     LEPD+
Sbjct: 320 ALRMFSEMIKEGLEPDH 336


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 232/422 (54%), Gaps = 40/422 (9%)

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           LID A ++F Q+ N   F F  N++I G++     + A   Y Q + +G+ PD  TFP +
Sbjct: 68  LIDYASRIFSQIQNPNLFIF--NAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFL 125

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA-------------------- 240
           +K+C  L  I +G + H   ++ GF  D +V N+LV MYA                    
Sbjct: 126 VKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDV 185

Query: 241 -----------KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
                      KCGD+  AR +FD++  K+L+++++M++GY  +    +A ++F+ +   
Sbjct: 186 VSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQ 245

Query: 290 GFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G   +   + S++++ +    L +G + H +V++ G+  +L +  +L+ +Y++ G +D+A
Sbjct: 246 GVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKA 305

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
            W+F+ +P++D +SW ++I     H     +L YF  M   G+ P  +TF ++LSAC+H 
Sbjct: 306 VWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHG 365

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V+ G ++F  M   + + PR+EHY CMV+L GRAG ++EA   ++ KM  + +  VWG
Sbjct: 366 GLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVL-KMPVKPNAPVWG 424

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           ALL AC +H N  +GE   + L +L P +   + LL  IY NA   + V  + +M+  +G
Sbjct: 425 ALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKG 484

Query: 524 LE 525
           L+
Sbjct: 485 LK 486



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 176/389 (45%), Gaps = 62/389 (15%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           S + G+     TF  L+++C +L  +  G + H  I  +   K+  + + L+ +YATFG 
Sbjct: 110 SQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGD 169

Query: 142 -------------------------------IDEAHQVFDQMSNRTAFAFPWNSLISGYA 170
                                          ++ A ++FDQM  +      W+++ISGYA
Sbjct: 170 TEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVT--WSTMISGYA 227

Query: 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           +   ++ A+ L+  ++ +GV  ++     V+ +CA LG + +GE+ H   V+ G   +  
Sbjct: 228 QNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLI 287

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           +  ALVDMYA+CG I KA  VF+ +  +D +S+ +++ G   HG    +   F  M+  G
Sbjct: 288 LGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAG 347

Query: 291 FDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350
             P  +  +++L+  S        HG ++ RG +    I  S+   +  + +L+    + 
Sbjct: 348 LTPRDITFTAVLSACS--------HGGLVERGFQ----IFESMKRDHRVEPRLEHYGCMV 395

Query: 351 DHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           D            ++    K  EA  +  +M    V P+   + +LL AC    + ++GE
Sbjct: 396 D------------LLGRAGKLEEAERFVLKMP---VKPNAPVWGALLGACRIHKNAEIGE 440

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           R+  ++++   +     +Y  + N+Y  A
Sbjct: 441 RVGKILIQL--LPQHSGYYVLLSNIYANA 467



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
            D  ++  +     G+        S++ +C  L A+E G + H  +  N +  N  + + 
Sbjct: 232 FDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTA 291

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA  G ID+A  VF+ +  R   +  W +LI+G A  G  E ++  +  M E G+ 
Sbjct: 292 LVDMYARCGSIDKAVWVFEDLPERDTLS--WTALIAGLAMHGYSERSLKYFATMVEAGLT 349

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKV 216
           P   TF  VL AC+  GL+  G ++
Sbjct: 350 PRDITFTAVLSACSHGGLVERGFQI 374


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 254/451 (56%), Gaps = 12/451 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
            + GI     T  S+L+ C  LK +  G  +H L+    L  +  + + L+ +Y+    +
Sbjct: 242 TEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNV 301

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A + F ++  +   +  WN ++S Y     + +A+AL   M  EG E D+ T   VL+
Sbjct: 302 HSAFKAFKEIPEKNIIS--WNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQ 359

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
                        VH   +R G+  +  +LN+++D YAKC  +  AR VFD +  KD+++
Sbjct: 360 IAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVA 419

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +++M+ G+  +G   EA  +F+ M      P+ V+I +++   A ++ LR     HG  +
Sbjct: 420 WSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAV 478

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           RRG+  ++ I  S+I +YSK G ++ +   F+ +PQK+VV W+++I A   +   HEAL+
Sbjct: 479 RRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALM 538

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+++++G  P+ +T +SLLSAC+H G ++ G   F+ MV+K+GI P +EHY+C+V++ 
Sbjct: 539 LFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKHGIEPGLEHYSCIVDML 598

Query: 437 GRAGLIDEAYSMIVEKM--EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
            RAG  +EA  +I EK+  E EA   +WG LL +C  +GN+ +G  AA ++ +LEP +  
Sbjct: 599 SRAGKFNEALELI-EKLPKEMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSA 657

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + L   +Y N G + D  ++ R+  ++G++
Sbjct: 658 GYMLASNLYANCGLMIDSAKMRRLAKEKGVK 688



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 203/387 (52%), Gaps = 19/387 (4%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +++   +LK    G   H  I  +       + + LL LYA   +   A+++F +MS R 
Sbjct: 154 VIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMY-FAYKLFGEMSVRN 212

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
                W+ +I G+ ++GE E    ++  M  E G+ PD  T   VLKAC  L  I +G  
Sbjct: 213 DVV-SWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTM 271

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH   +  G   D FV N+L+DMY+KC ++  A   F  I  K++IS+N ML+ YI +  
Sbjct: 272 VHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNES 331

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANS 332
            +EA  +   M+  G + D V ++++L  A       +   VHG ++R+G E +  + NS
Sbjct: 332 HLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNS 391

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           +I  Y+K   ++ A  +FD M +KDVV+W+++I     + K  EA+  F+QM  + V+P+
Sbjct: 392 VIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEE-VIPN 450

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID---EAY 446
           +++ ++L+ ACA    ++  +    + V + G++  V     ++++Y + G I+    A+
Sbjct: 451 NVSIMNLMEACAVSAELRQSKWAHGIAVRR-GLASEVAIGTSIIDMYSKCGDIEASIRAF 509

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHG 473
           + I +K     + V W A++ A  ++G
Sbjct: 510 NQIPQK-----NVVCWSAMISAFRING 531



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 181/406 (44%), Gaps = 41/406 (10%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T    S+L+ C    +   G  +H  +     + +  I++  +  Y  +G +D A + FD
Sbjct: 48  TWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFD 106

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
              N+ + +  WN ++ G    G     +  + +      +P+  +   V++A   L + 
Sbjct: 107 STKNKDSVS--WNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIY 164

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
             G   H    R GF     V N+L+ +YA+       +   +     D++S++ M+ G+
Sbjct: 165 SQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMYFAYKLFGEMSVRNDVVSWSVMIGGF 224

Query: 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWD 326
           +  G   + F +FR M+   G  PD V + S+L   + L+   +G  VHG V+ RG+E D
Sbjct: 225 VQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDD 284

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH--SKDH-EALIYFEQMER 383
           L + NSLI +YSK   +  A   F  +P+K+++SWN ++ A+  ++ H EAL     M R
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 384 DGVLPDHLTFVSLLSACAH-LGSVKV--------------GERLFSVMVEKYGISPRVE- 427
           +G   D +T  ++L    H L S+K                E L + +++ Y     VE 
Sbjct: 345 EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVEL 404

Query: 428 --------------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
                          ++ M+  + R G  DEA S + ++M  E  P
Sbjct: 405 ARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAIS-VFKQMNEEVIP 449



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 150/309 (48%), Gaps = 14/309 (4%)

Query: 173 GEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
           G +++A+ LY ++   G +  D +  P +LKAC+      +G  +H   ++ G      +
Sbjct: 26  GNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIKQGCQSSTSI 84

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            N+ +D Y K GD+  A+  FD   NKD +S+N M+ G   +G ++     F       F
Sbjct: 85  ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHF 144

Query: 292 DPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            P+  ++  ++     L+I +Q    HG++ R G    L + NSL+ +Y+ +  +  A  
Sbjct: 145 QPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYA-EVHMYFAYK 203

Query: 349 LFDHMP-QKDVVSWNSIIHAH---SKDHEALIYFEQMERD-GVLPDHLTFVSLLSACAHL 403
           LF  M  + DVVSW+ +I       +D +  + F  M  + G+ PD +T VS+L AC +L
Sbjct: 204 LFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNL 263

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
             + +G  +  +++ + G+   +     ++++Y +   +  A+    E    E + + W 
Sbjct: 264 KDISLGTMVHGLVIFR-GLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIP--EKNIISWN 320

Query: 464 ALLYACYLH 472
            +L A  L+
Sbjct: 321 LMLSAYILN 329


>gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1040

 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 245/444 (55%), Gaps = 16/444 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  +LL    +  +++ G  LH L+  + L K   +++ LL +YA    + +A  +F++M
Sbjct: 219 TLINLLRATVESNSLKIGKVLHSLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFEKM 278

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WN +IS Y+  G  ++++ L + M   G+ PD FT    + +   L  I  
Sbjct: 279 PEKDVVV--WNIMISVYSGSGCPKESLELVYCMVRSGIRPDMFTAIPAISSITKLKSIEW 336

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   +R G  +   V N+LVDMY+ C D+  AR +F  I ++ ++S+++M+ GY  
Sbjct: 337 GKQLHAQVIRNGSDYQVSVHNSLVDMYSTCADLNSARKIFGLIKDRTVVSWSAMIKGYAM 396

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDL 327
           H   +EA  +F  M L+G   D V + +IL   +  +IGA      +HG+ L+  ++   
Sbjct: 397 HDNCLEALSLFIEMKLSGTKVDLVIVINIL--PAFAKIGALHYVGYLHGYSLKTNLDSLK 454

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFE---QME 382
            +  SL+  Y+K G ++ A  LF+      KD+V+WNS+I A+S   E    FE   Q++
Sbjct: 455 SLKTSLLNSYAKCGCIEMARKLFNEEKSSLKDIVAWNSMITAYSNHGEWFQCFELYNQIK 514

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              V PDH+TF+ +L+AC + G V  G+ +F  MV+ YG  P  EH ACMV+L GRAG I
Sbjct: 515 LSIVKPDHVTFLGMLTACVNSGLVDKGKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKI 574

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHNFELLIK 501
           DEA   I+E  +  +   V+G LL AC +HG      E AA+KL ++EP+N  N+ LL  
Sbjct: 575 DEARK-IIETNQLNSDARVYGPLLSACKMHGLETDFAELAAEKLIKMEPENPANYVLLSN 633

Query: 502 IYGNAGRLDDVERVERMLVDRGLE 525
           I+  AG+ D   ++   L DRGL+
Sbjct: 634 IFAAAGKWDKFAKMRSFLRDRGLK 657



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 178/369 (48%), Gaps = 12/369 (3%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN+LI    E G+  ++  L+ +M  E V+P+  T   +L+A      +++G+ +H   V
Sbjct: 185 WNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLHSLVV 244

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
                 +  V  AL+ MYAK   +  AR +F+++  KD++ +N M++ Y   G   E+ +
Sbjct: 245 ASNLCKELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLE 304

Query: 282 IFRGMILNGFDPDPV----AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           +   M+ +G  PD      AISSI    S +  G Q+H  V+R G ++ + + NSL+ +Y
Sbjct: 305 LVYCMVRSGIRPDMFTAIPAISSITKLKS-IEWGKQLHAQVIRNGSDYQVSVHNSLVDMY 363

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           S    L+ A  +F  +  + VVSW+++I     H    EAL  F +M+  G   D +  +
Sbjct: 364 STCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVI 423

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           ++L A A +G++     L    + K  +         ++N Y + G I+ A  +  E+  
Sbjct: 424 NILPAFAKIGALHYVGYLHGYSL-KTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEEKS 482

Query: 455 FEASPVVWGALLYACYLHGN--VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
                V W +++ A   HG    C       KL  ++PD+   F  ++    N+G +D  
Sbjct: 483 SLKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHV-TFLGMLTACVNSGLVDKG 541

Query: 513 ERVERMLVD 521
           + + + +VD
Sbjct: 542 KEIFKEMVD 550



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 195/397 (49%), Gaps = 35/397 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S+L  C + + ++   ++H     + L +N  +SSKL+  Y+ FGL+  +H++F   
Sbjct: 23  TTSSILNLCTKPQYLQ---QIHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKIFSFT 79

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL----G 208
            N  +  +  N+ +      GEYE  + LY +M ++ + PD+     VLK+   +    G
Sbjct: 80  ENPDSIIY--NAFLRNLFMFGEYEKTLFLYKEMVQKSMCPDEDCCFSVLKSLFYVFHEKG 137

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
           LI +    H   V+ G      V N L+++Y      +    + +R     L  +N+++ 
Sbjct: 138 LIMMA---HGHVVKLGMDAFDLVGNTLIELYG----FLNGNGLVERKSVTKLNFWNNLIY 190

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
                G +VE+F++F  M      P+ V + ++L     ++ L+IG  +H  V+   +  
Sbjct: 191 EAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLHSLVVASNLCK 250

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS-----KDHEALIYFEQ 380
           +L +  +L+ +Y+K   L  A  +F+ MP+KDVV WN +I  +S     K+   L+Y   
Sbjct: 251 ELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLELVYC-- 308

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M R G+ PD  T +  +S+   L S++ G++L + ++ + G   +V  +  +V++Y    
Sbjct: 309 MVRSGIRPDMFTAIPAISSITKLKSIEWGKQLHAQVI-RNGSDYQVSVHNSLVDMYSTCA 367

Query: 441 LIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGN 474
            ++ A   + +I ++     + V W A++    +H N
Sbjct: 368 DLNSARKIFGLIKDR-----TVVSWSAMIKGYAMHDN 399



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 138/274 (50%), Gaps = 16/274 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++GI     T    + +  +LK++E G +LH  +  N       + + L+ +Y+T   +
Sbjct: 310 VRSGIRPDMFTAIPAISSITKLKSIEWGKQLHAQVIRNGSDYQVSVHNSLVDMYSTCADL 369

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + A ++F  + +RT  +  W+++I GYA      +A++L+ +M+  G + D      +L 
Sbjct: 370 NSARKIFGLIKDRTVVS--WSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVINILP 427

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD--RIGNKDL 260
           A A +G +     +H  +++        +  +L++ YAKCG I  AR +F+  +   KD+
Sbjct: 428 AFAKIGALHYVGYLHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEEKSSLKDI 487

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHG- 316
           +++NSM+T Y +HG   + F+++  + L+   PD V    +L    N+ L+  G ++   
Sbjct: 488 VAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHVTFLGMLTACVNSGLVDKGKEIFKE 547

Query: 317 ----WVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
               +  +   E + C+ + L     + GK+D+A
Sbjct: 548 MVDIYGFQPSKEHNACMVDLL----GRAGKIDEA 577


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/433 (32%), Positives = 238/433 (54%), Gaps = 8/433 (1%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           +  C +L  +E G ++HR         ++ ++S L+ +Y     ++ A +VF QM  ++ 
Sbjct: 214 ISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSL 273

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            A  WNS+I GY   G+ +  + L  +M  EG  P Q T   +L AC+    +  G+ VH
Sbjct: 274 VA--WNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVH 331

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
              +R     D ++  +L+D+Y KCG++  A TVF +     + S+N M++GY+  G   
Sbjct: 332 GYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWF 391

Query: 278 EAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLI 334
           +A D++  M+  G  PD V  +S+L+  S    L  G Q+H  +    +E D  + ++L+
Sbjct: 392 KAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALL 451

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL 391
            +YSK G + +A  +F+ +P+KDVVSW  +I A   H +  EAL +F++M++ GV PD +
Sbjct: 452 DMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGV 511

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           TF+++LSAC H G +  G + FS M  KYGI   +E Y+C++++ GRAG + EAY ++ +
Sbjct: 512 TFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQ 571

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           K E   +  +   L  AC LH +  +G T A+ L E  PD+   + +L  +Y +    D 
Sbjct: 572 KPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPDDASTYTVLFNLYASGESWDA 631

Query: 512 VERVERMLVDRGL 524
            +RV   + + G+
Sbjct: 632 AKRVRLKMKEVGM 644



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 211/424 (49%), Gaps = 46/424 (10%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++S L+ +YA F L +++ QVFD+M  R   +  WN++IS + + G+ E A+ L+ +ME 
Sbjct: 143 VASSLVGMYAKFNLFEDSVQVFDEMPERDVAS--WNTVISSFYQRGDAEKALELFGRMER 200

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
              EP+  +    + AC+ L  +  G+++H   ++  F  D +V +ALVDMY +C  +  
Sbjct: 201 SDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEM 260

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           AR VF ++  K L+++NSM+ GY+  G      ++   MI+ G  P    ++SIL   S 
Sbjct: 261 AREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSR 320

Query: 308 LRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV-SWNS 363
            R    G  VHG+V+R  V+ D+ I  SLI +Y K G++  A  +F    QKDVV SWN 
Sbjct: 321 SRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVF-LKTQKDVVESWNV 379

Query: 364 IIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG----------- 409
           +I  +       +A+  ++QM   GV PD +TF S+LS C+ L +++ G           
Sbjct: 380 MISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESR 439

Query: 410 ----ERLFSVMVEKYGISPRVEH---------------YACMVNLYGRAGLIDEAYSMIV 450
               E L S +++ Y     V+                +  M++ YG  G   EA     
Sbjct: 440 LETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFD 499

Query: 451 EKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGN 505
           E  +F   P  V + A+L AC   G +  G     ++   + +E   E  +  LI I G 
Sbjct: 500 EMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQ-YSCLIDILGR 558

Query: 506 AGRL 509
           AGRL
Sbjct: 559 AGRL 562



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 163/320 (50%), Gaps = 8/320 (2%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +++    SLL  C   K++     +H+ I T  LR +  +   L+ +Y        A  V
Sbjct: 1   MESSKLLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLV 60

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACAGL 207
           F+ +  R+   + WNSL+SGY++   + D + ++ ++    +  PD FT+P V+KA   L
Sbjct: 61  FENIDIRSD-VYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGAL 119

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G   +G  +H   V+ G   D  V ++LV MYAK      +  VFD +  +D+ S+N+++
Sbjct: 120 GREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVI 179

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVE 324
           + +   G   +A ++F  M  + F+P+ V+I+  ++  S    L  G ++H   L++  E
Sbjct: 180 SSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFE 239

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER- 383
            D  + ++L+ +Y +   L+ A  +F  M +K +V+WNS+I  +    ++    E + R 
Sbjct: 240 LDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRM 299

Query: 384 --DGVLPDHLTFVSLLSACA 401
             +G  P   T  S+L AC+
Sbjct: 300 IIEGTRPSQTTLTSILMACS 319



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 29/236 (12%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     TF S+L TC QL A+E G ++H  I  + L  ++ + S LL +Y+  G +
Sbjct: 401 VSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNV 460

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA ++F+ +  +   +  W  +IS Y   G+  +A+  + +M++ GV+PD  TF  VL 
Sbjct: 461 KEASRIFNSIPKKDVVS--WTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLS 518

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRI----G 256
           AC   GLI  G K +   +R  +G +  +   + L+D+  + G +++A  +  +      
Sbjct: 519 ACGHAGLIDEGVK-YFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRD 577

Query: 257 NKDLIS--------YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           N +L+S        +   L GY    LLVE +            PD  +  ++L N
Sbjct: 578 NAELLSTLFCACCLHRDHLLGYTIAKLLVEKY------------PDDASTYTVLFN 621


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 252/482 (52%), Gaps = 14/482 (2%)

Query: 53  SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIK 112
           +P P + N       + Q     +      V+ G+ V   T+  +L  C +L AV+ G +
Sbjct: 73  NPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRR 132

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
            H  +  N    +  + + L++ Y   G    A  VFD+ + R      WN +I+ +   
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVT--WNIMINAHLNK 190

Query: 173 GEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
           G  E A  L  +M + + + PD+ T   ++ ACA LG +  G+ +H  +   G   +  V
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRV 250

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NA++DMY KC DI  A+ VF+RI  KD++S+ SML+G    G   EA  +F+ M LN  
Sbjct: 251 NNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKI 310

Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           + D + +  +L   A    L  G  +H  + +  +  DL +  +L+ +Y+K G +D A  
Sbjct: 311 ELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQ 370

Query: 349 LFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
           +F  M  ++V +WN++I     H H +D  A+  F+QME D ++PD +TF++LL AC+H 
Sbjct: 371 VFRRMRVRNVFTWNALIGGLAMHGHGED--AISLFDQMEHDKLMPDDVTFIALLCACSHA 428

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G  +F  M  K+ I PR+EHY C+V+L  RA  +D+A + I E M  +A+ V+W 
Sbjct: 429 GLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFI-ENMPIKANSVLWA 487

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            LL AC   G+  + E   +++ ELEPD+   + +L  +Y    + D   ++ + + ++G
Sbjct: 488 TLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKG 547

Query: 524 LE 525
           +E
Sbjct: 548 IE 549



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 222/411 (54%), Gaps = 21/411 (5%)

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATF--GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           H L+    L  N   SSKL+   A    G ++ A ++F QM N   F    N++I GYA 
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFI--CNTMIRGYAR 88

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
                +A++LY+ M E GV  D +T+P VL ACA LG +++G + H + ++ GFG D FV
Sbjct: 89  SQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFV 148

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNG 290
           +NAL+  Y  CG    A  VFD    +D++++N M+  +++ GL  +AFD+   M  L+ 
Sbjct: 149 INALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDN 208

Query: 291 FDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
             PD V + S++ A A L  L  G  +H +    G++ +L + N+++ +Y K   ++ A 
Sbjct: 209 LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQ 268

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            +F+ + +KDV+SW S++   +K     EAL  F++M+ + +  D +T V +LSACA  G
Sbjct: 269 EVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTG 328

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
           ++  G +   ++++K+ I+  +     +V++Y + G ID A   +  +M    +   W A
Sbjct: 329 ALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQ-VFRRMRVR-NVFTWNA 385

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDD 511
           L+    +HG+   GE A     ++E D    ++  F  L+    +AG +D+
Sbjct: 386 LIGGLAMHGH---GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDE 433


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 245/451 (54%), Gaps = 25/451 (5%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E   Q G+     TF  L++   ++  V    K+H L+    L  +  + S L+  Y   
Sbjct: 49  EEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKS 108

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
            L+ EA ++FD++ +R      WNS+++GYA++G +++A+ +  +M +EGV   +FT   
Sbjct: 109 ELMKEARELFDEIPDRDVVL--WNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSG 166

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VL   AG G    G  VH   ++ GF     V NAL+DMY KC  +V A  +F+ +  KD
Sbjct: 167 VLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKD 226

Query: 260 LISYNSMLTG----YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GA 312
           + S+NS+L+       H G L     +F  M+ +G   D V I++IL   S L     G 
Sbjct: 227 IFSWNSILSANELCSDHDGTL----RLFDRMLGDGVQLDLVTITTILPACSHLAALVHGR 282

Query: 313 QVHGWVLRRGV--------EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           ++HG+++  G          ++L   N+L+ +Y+K G +  A  +F +M  +D  SWN +
Sbjct: 283 EIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIM 342

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H   +EAL  F  M + G+ P+ +TFV +L AC+H G +  G +    M  K+G
Sbjct: 343 IMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHG 402

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P ++HY C++++ GRAG ++EAY + V  M  + +PVVW ALL AC L+GNV + E A
Sbjct: 403 VVPTIQHYTCVIDMLGRAGQLEEAYKLAV-TMPIQTNPVVWRALLAACQLYGNVDLAEVA 461

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
           AQK+FEL P +  N+ L+   Y  AGR  +V
Sbjct: 462 AQKVFELNPAHCGNYVLMSNAYVAAGRYQEV 492



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 17/353 (4%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA    +++A  V ++ ++     F +N+LISG+   G  +D +  Y +M + GV PD+
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 195 FTFPRVLKA-CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           +TFP ++K  C  + + +V +K+H    + G   D +V ++LV  Y K   + +AR +FD
Sbjct: 61  YTFPCLIKGLCEVMEVFQV-KKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFD 119

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRI 310
            I ++D++ +NSM+ GY   G   EA  + R M   G       +S   S+ A       
Sbjct: 120 EIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDN 179

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-- 368
           G  VHG++++ G +  + + N+LI +Y K   +  A  +F+ M +KD+ SWNSI+ A+  
Sbjct: 180 GRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANEL 239

Query: 369 SKDHEA-LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV----EKYGIS 423
             DH+  L  F++M  DGV  D +T  ++L AC+HL ++  G  +   M+     K G S
Sbjct: 240 CSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGES 299

Query: 424 P---RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
                ++    ++++Y + G + +A  M+   M        W  ++    +HG
Sbjct: 300 ENMYNLQTINALMDMYAKCGSMRDA-GMVFYNMS-NRDTASWNIMIMGYGMHG 350



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK-------- 124
           D  ++  +  + +G+ +   T  ++L  C  L A+ HG ++H  +  N   K        
Sbjct: 244 DGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMY 303

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N    + L+ +YA  G + +A  VF  MSNR   +  WN +I GY   G   +A+ ++  
Sbjct: 304 NLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTAS--WNIMIMGYGMHGYGNEALYMFSD 361

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           M + G++P++ TF  VL AC+  G I  G K
Sbjct: 362 MCKSGLKPNEITFVGVLLACSHAGFISQGIK 392


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 260/482 (53%), Gaps = 41/482 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ GI     T+ S+L+ C +   +  G ++H  I  + ++ +  + + L+ +Y   G +
Sbjct: 267 VKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKV 326

Query: 143 DEAHQVFDQMSNRTAFAFP---------------------------------WNSLISGY 169
             A  +FD++  R A ++                                  WN++  GY
Sbjct: 327 GIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGY 386

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
              G Y+ A+ L  QM + G   D       L AC+ +G  ++G+++H  A+R  FG   
Sbjct: 387 LRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVD 446

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            V N+L+ MY++C D+  A  +F  +  K LIS+NS+++G  H     EA  + R M+L+
Sbjct: 447 TVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLS 506

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVVYSKDGKLDQ 345
           G +P+ V I+S+L   A  + L+ G + H ++ RR    D L + N+L+ +Y++ GK+ +
Sbjct: 507 GIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLE 566

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD + ++D +++ S+I  +    E   AL  FE+M    + PDH+T +++LSAC+H
Sbjct: 567 ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSH 626

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V  G+ LF  M   YG++P +EH+ACM +L+GRAGL+++A   I+  M ++ +P +W
Sbjct: 627 SGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKE-IIRNMPYKPTPAMW 685

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
             L+ AC +H N  +GE AA+KL E++P+N   + L+  +Y  AG  + + +V   + D 
Sbjct: 686 ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDL 745

Query: 523 GL 524
           G+
Sbjct: 746 GV 747



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 256/557 (45%), Gaps = 92/557 (16%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALD-----SIIQDLESSVQNGITVQTETFASLLE 99
           TF+S   S    LLT+ K F  ++   LD     S+I+   SS    + V     +SLL 
Sbjct: 126 TFTSVDASMIDSLLTSLKEF-TSRGNLLDAFKTVSLIRLHASSASQDLIVHP--ISSLLS 182

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           +C  +K++  G +LH  I +    ++  +  KL+  Y+ F L+ +AH V  + SN     
Sbjct: 183 SCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAH-VITENSN-ILHP 240

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH-- 217
           FPWN LIS Y   G  + A++ Y QM ++G+ PD FT+P VLKAC     +  G++VH  
Sbjct: 241 FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHES 300

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
           ++A R  +     V NAL+ MY KCG +  AR +FD+I  +D +S+NSM++ Y   G+  
Sbjct: 301 INASRIKWSL--IVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWN 358

Query: 278 EAFDIFRGM----------ILN-------------------------GFDPDPVAISSIL 302
           EAF++F  M          I N                         G   D VA+   L
Sbjct: 359 EAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGL 418

Query: 303 ANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              S +   ++G ++H + +R        + NSLI +YS+   L  A  LF  M  K ++
Sbjct: 419 GACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLI 478

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SWNSII       +  EA     +M   G+ P+++T  S+L  CA + +++ G+     M
Sbjct: 479 SWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYM 538

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWG---------- 463
             +      +  +  +V++Y R+G + EA   + M+ E+ +   + ++ G          
Sbjct: 539 TRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAA 598

Query: 464 --------------------ALLYACYLHGNVCMGETAAQK---LFELEPDNEHNFELLI 500
                               A+L AC   G V  G+   +K   L+ L P  EH F  + 
Sbjct: 599 LKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEH-FACMT 657

Query: 501 KIYGNAGRLDDVERVER 517
            ++G AG L+  + + R
Sbjct: 658 DLFGRAGLLNKAKEIIR 674



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 168/407 (41%), Gaps = 58/407 (14%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++ R IP    +  K +  + +   A+   ++ A + F  +      A   +SL++   E
Sbjct: 90  QIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVD-----ASMIDSLLTSLKE 144

Query: 172 L---GEYEDAIAL--YFQMEEEGVEPDQFTFP--RVLKACAGLGLIRVGEKVHLDAVRFG 224
               G   DA       ++       D    P   +L +C  +  +  G ++H   +  G
Sbjct: 145 FTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLG 204

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F     ++  LV  Y+    +V A  + +         +N +++ Y+ +G   +A   ++
Sbjct: 205 FEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYK 264

Query: 285 GMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M+  G  PD     S+L        L  G +VH  +    ++W L + N+LI +Y K G
Sbjct: 265 QMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCG 324

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAH-----------------SKDHE----------- 373
           K+  A  LFD +P++D VSWNS+I  +                 ++D E           
Sbjct: 325 KVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAG 384

Query: 374 ----------ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGI 422
                     AL    QM + G   D +  +  L AC+H+G  K+G+ + S  +   +G 
Sbjct: 385 GYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGE 444

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
              V++   ++ +Y R   +  AY ++ + ME + S + W +++  C
Sbjct: 445 VDTVKN--SLITMYSRCKDLKHAY-LLFQLMEAK-SLISWNSIISGC 487


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 244/449 (54%), Gaps = 23/449 (5%)

Query: 88  TVQTETFASLLETCYQLKAVEH----GIKLHRLIPTNLLRKNKGISSKLLRLYA---TFG 140
           T    +  S L  C  LK ++      IK H       L+ +  I +KL+       T  
Sbjct: 23  TTYPSSLLSCLPKCTSLKELKQIQAFSIKTH-------LQNDLQILTKLINSCTQNPTTA 75

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +D AHQ+F+ +       F  NS+  GY+       AI+L+ +     + PD +TFP +
Sbjct: 76  SMDYAHQLFEAIPQPDIVLF--NSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSL 133

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           LKAC      + G+++H  A++ G   + +V   L++MYA C D+  A+ VFD I    +
Sbjct: 134 LKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCV 193

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGW 317
           +SYN+++TGY       EA  +FR +      P+ V + S+L++ +L   L +G  +H +
Sbjct: 194 VSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEY 253

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
           V + G++  + +  +LI +Y+K G LD A  +F+ M  +D  +W+++I A   H +  + 
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDV 313

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  FE+M R  V PD +TF+ LL AC+H G V  G R F  M E YGI P ++HY CMV+
Sbjct: 314 MSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVD 373

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAGL+ EAY  I +++  + +P++W  LL +C  HGN+ + +    ++ EL+  +  
Sbjct: 374 LLGRAGLLHEAYKFI-DELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGG 432

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRG 523
           ++ +L  +   AG+ +DV+ + ++++ +G
Sbjct: 433 DYVILSNLCARAGKWEDVDTLRKLMIHKG 461


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 230/407 (56%), Gaps = 9/407 (2%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           N  +++ LL  Y+    +D+  ++FD+M  R   ++  N +I+ YA        + L+ +
Sbjct: 468 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSY--NVIIAAYAWNQCAATVLRLFRE 525

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M++ G +     +  +L     L  + +G+++H   V  G   +  + NAL+DMY+KCG 
Sbjct: 526 MQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 585

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  A++ F     K  IS+ +++TGY+ +G   EA  +F  M   G  PD    SSI+  
Sbjct: 586 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 645

Query: 305 AS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
           +S   ++ +G Q+H +++R G +  +   + L+ +Y+K G LD+A   FD MP+++ +SW
Sbjct: 646 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 705

Query: 362 NSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N++I A++   E   A+  FE M   G  PD +TF+S+L+AC+H G      + F +M  
Sbjct: 706 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 765

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           +Y ISP  EHYAC+++  GR G   +   M+VE M F+A P++W ++L++C +HGN  + 
Sbjct: 766 QYSISPWKEHYACVIDTLGRVGCFSQVQKMLVE-MPFKADPIIWTSILHSCRIHGNQELA 824

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             AA KLF +EP +   + +L  IY  AG+ +D   V++++ DRG+ 
Sbjct: 825 RVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVR 871



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 149/291 (51%), Gaps = 15/291 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G   Q   +A++L     L  V  G ++H  +    L     + + L+ +Y+  G++D A
Sbjct: 530 GFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 589

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              F   S ++A +  W +LI+GY + G++E+A+ L+  M   G+ PD+ TF  ++KA +
Sbjct: 590 KSNFSNRSEKSAIS--WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 647

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L +I +G ++H   +R G+    F  + LVDMYAKCG + +A   FD +  ++ IS+N+
Sbjct: 648 SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNA 707

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV--------HGW 317
           +++ Y H+G    A  +F GM+  GF+PD V   S+LA  S   +  +         H +
Sbjct: 708 VISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQY 767

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
            +    E   C+ ++L  V    G   Q   +   MP K D + W SI+H+
Sbjct: 768 SISPWKEHYACVIDTLGRV----GCFSQVQKMLVEMPFKADPIIWTSILHS 814



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 30/340 (8%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  Y++ G +  A  +F    +R A    W  ++  +A  G   DA++L+  M  EGV 
Sbjct: 294 ILSAYSSSGDLPAAQHLFLSSPHRNATT--WTIMMRAHAAAGRTSDALSLFRAMLGEGVI 351

Query: 192 PDQFTFPRVLK--ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           PD+ T   VL    C    L       H  A++FG     FV N L+D Y K G +  AR
Sbjct: 352 PDRVTVTTVLNLPGCTVPSL-------HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAAR 404

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309
            VF  + +KD ++YN+M+ G    GL  +A  +F  M   G+   P+ +     + S   
Sbjct: 405 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRS--- 461

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
                     R     ++ + NSL+  YSK   LD    LFD MP++D VS+N II A++
Sbjct: 462 ----------RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 511

Query: 370 KDHEA---LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
            +  A   L  F +M++ G     L + ++LS    L  V +G+++ + +V   G++   
Sbjct: 512 WNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV-LLGLASED 570

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
                ++++Y + G++D A S    +   E S + W AL+
Sbjct: 571 LLGNALIDMYSKCGMLDAAKSNFSNRS--EKSAISWTALI 608



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 11/244 (4%)

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVLKACAGLG 208
           Q   R     P  +  S      EY  A      +++   +  P   T   VL     LG
Sbjct: 204 QAGGRYGTTMPVPATPSTSPPWKEYAPAAPGVVPLKQPSSQAAPAGVTGFDVLTYRLNLG 263

Query: 209 LIRVGEKVHLDAVRFGFG----FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           L  +    HL   R  F      + F LN ++  Y+  GD+  A+ +F    +++  ++ 
Sbjct: 264 LRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWT 323

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
            M+  +   G   +A  +FR M+  G  PD V ++++L N     +   +H + ++ G++
Sbjct: 324 IMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-NLPGCTV-PSLHPFAIKFGLD 381

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQM 381
             + + N+L+  Y K G L  A  +F  M  KD V++N+++   SK+    +AL  F  M
Sbjct: 382 THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 441

Query: 382 ERDG 385
            R G
Sbjct: 442 RRAG 445


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 225/398 (56%), Gaps = 17/398 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + +L LY     + EA+ VF +M  R + +  WN++I+   +   YED I    +M  
Sbjct: 368 VRNAILDLYGKCKALVEAYLVFQEMEQRDSVS--WNTIIAALEQNECYEDTIVHLNEMLR 425

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+E D FT+  VLKACAGL  +  G  VH  A++ G G D FV + +VDMY KCG I +
Sbjct: 426 SGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITE 485

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A  + DRIG ++L+S+NS++ G+  +    EA   F  M+  G  PD    +++L   AN
Sbjct: 486 ALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCAN 545

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            + + +G Q+HG ++++ +  D  I+++L+ +Y+K G +  +  +F+ + + D VSWN++
Sbjct: 546 LATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAM 605

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H +  EAL  FE+ ++  V P+H TFV++L AC+H+G +  G R F +M  +Y 
Sbjct: 606 ICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYK 665

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           + P++EH+ACM           EA   I   M  EA  V+W  LL  C +  +V + ETA
Sbjct: 666 LEPQLEHFACMGP--------QEALKFI-RSMPLEADAVIWKTLLSICKIRQDVEVAETA 716

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           A  +  L+PD+   + LL  +Y  +G+  DV R  R++
Sbjct: 717 ASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLM 754



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 198/462 (42%), Gaps = 105/462 (22%)

Query: 91  TETFASLLETCYQL--KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           T TF+ + + C      A+  G   H  +  +       +S+ LL++YA  G    AH V
Sbjct: 29  TATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGV 88

Query: 149 FDQMSNR---------TAFA--------------------FPWNSLISGYAELGEYEDAI 179
           FD M +R         TA+A                      WN+L+SGY + G + D +
Sbjct: 89  FDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLV 148

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
            L  +M   GV PD+ T   +LKAC GL  + +G ++H  AV+ G   D    +ALVDMY
Sbjct: 149 GLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMY 208

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH-----GL-----------LVEAFDIF 283
            KC  +  A   F  +G ++ +S+ +++ G + +     GL           L  A  + 
Sbjct: 209 GKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLH 268

Query: 284 RGMILNGFDPDPV---AISSILANA--------------------------SLLRIG--- 311
              I N F  D V   AI  + A A                           L+R G   
Sbjct: 269 AHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGA 328

Query: 312 --AQVHGWVLRRGVEW--------------------DLCIANSLIVVYSKDGKLDQACWL 349
              Q+  ++ R G+ +                    D+C+ N+++ +Y K   L +A  +
Sbjct: 329 EAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLV 388

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           F  M Q+D VSWN+II A  ++    + +++  +M R G+  D  T+ S+L ACA L S+
Sbjct: 389 FQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSL 448

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           + G  +    + K G+       + +V++Y + G+I EA  +
Sbjct: 449 EYGLVVHGKAI-KSGLGLDAFVSSTVVDMYCKCGMITEALKL 489



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 210/451 (46%), Gaps = 44/451 (9%)

Query: 89  VQTETFASLLE---TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           VQ E +   LE    C  +  +    +LH     N    ++ + + ++ +YA    + +A
Sbjct: 240 VQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDA 299

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            + F  + N T      N+++ G    G   +A+ L+  M   G+     +   V  ACA
Sbjct: 300 RRAFFGLPNHTVET--CNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACA 357

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +                GF  D  V NA++D+Y KC  +V+A  VF  +  +D +S+N+
Sbjct: 358 EVK---------------GFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNT 402

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++     +    +       M+ +G + D     S+L   A    L  G  VHG  ++ G
Sbjct: 403 IIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSG 462

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFE 379
           +  D  ++++++ +Y K G + +A  L D +  +++VSWNSII   S   +  EA  +F 
Sbjct: 463 LGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFS 522

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M   GV PDH T+ ++L +CA+L ++++G+++   ++++  +       + +V++Y + 
Sbjct: 523 EMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFIS-STLVDMYAKC 581

Query: 440 GLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPD 491
           G + ++  M   V+K++F    V W A++    LHG        A ++FE      + P 
Sbjct: 582 GNMPDSQLMFEKVQKLDF----VSWNAMICGYALHGQ----GFEALEMFERTQKANVAP- 632

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           N   F  +++   + G LDD  R   ++  R
Sbjct: 633 NHATFVAVLRACSHVGLLDDGCRYFHLMTSR 663



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 134/234 (57%), Gaps = 3/234 (1%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D+I+  L   +++G+     T+ S+L+ C  L+++E+G+ +H     + L  +  +SS +
Sbjct: 415 DTIVH-LNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTV 473

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           + +Y   G+I EA ++ D++  +   +  WNS+I+G++   + E+A   + +M + GV+P
Sbjct: 474 VDMYCKCGMITEALKLHDRIGGQELVS--WNSIIAGFSLNKQSEEAQKFFSEMLDMGVKP 531

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D FT+  VL +CA L  I +G+++H   ++     D F+ + LVDMYAKCG++  ++ +F
Sbjct: 532 DHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMF 591

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +++   D +S+N+M+ GY  HG   EA ++F         P+     ++L   S
Sbjct: 592 EKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACS 645


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 245/465 (52%), Gaps = 36/465 (7%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+++L  C + + V+ G +++  I       +  + S L+ +Y   GLI +A + FD+M
Sbjct: 140 TFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEM 199

Query: 153 SNRTAF-----------------------------AFPWNSLISGYAELGEYEDAIALYF 183
             R                                +  W  +I+G  + G   +A+ ++ 
Sbjct: 200 PERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFR 259

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M   G   DQFTF  VL AC  L  +  G+++H   +R     + FV +ALVDMY+KC 
Sbjct: 260 EMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCR 319

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            I  A TVF R+  K++IS+ +ML GY  +G   EA  IF  M  NG +PD   + S++ 
Sbjct: 320 SIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVIS 379

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             AN + L  GAQ H   L  G+   + ++N+LI +Y K G  + +  LF  M  +D VS
Sbjct: 380 SCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS 439

Query: 361 WNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           W +++  ++   K +E +  FE+M   G+ PD +TF+ +LSAC+  G V+ G + F  M+
Sbjct: 440 WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMI 499

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           +++GI P V+H  C+++L GRAG ++EA + I   M      V W  LL +C +HG++ +
Sbjct: 500 KEHGIMPIVDHCTCIIDLLGRAGRLEEARNFI-NNMPCHPDVVGWATLLSSCRVHGDMEI 558

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           G+ AA  L  LEP N  ++ LL  +Y + G+ D V ++ R + D+
Sbjct: 559 GKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDK 603



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 220/445 (49%), Gaps = 53/445 (11%)

Query: 90  QTETFAS--LLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAH 146
           Q ETF S  L+   Y+L  + +   +   IP  NL   N      +L +Y+  GL+ +  
Sbjct: 37  QPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNT-----ILSVYSKLGLLSQMQ 91

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACA 205
           Q+F+ M  R   +  WN  ISGYA  G   DA+ +Y   +++  +  ++ TF  +L  C+
Sbjct: 92  QIFNLMPFRDGVS--WNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCS 149

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD------------ 253
               + +G +++   ++FGFG D FV + LVDMY K G I  A+  FD            
Sbjct: 150 KFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNT 209

Query: 254 ------RIG-------------NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
                 R G              +D IS+  M+TG + +GL  EA D+FR M L GF  D
Sbjct: 210 MITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMD 269

Query: 295 PVAISSIL-ANASLLRI--GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                S+L A  SLL +  G Q+H +V+R   + ++ + ++L+ +YSK   +  A  +F 
Sbjct: 270 QFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFK 329

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            MPQK+V+SW +++  + ++    EA+  F +M+R+GV PD  T  S++S+CA+L S++ 
Sbjct: 330 RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEE 389

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL-- 466
           G + F       G+   +     ++ LYG+ G  + ++ +  E M      V W ALL  
Sbjct: 390 GAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE-MNIR-DEVSWTALLAG 446

Query: 467 YACYLHGNVCMGETAAQKLFELEPD 491
           YA +   N  +G         L+PD
Sbjct: 447 YAQFGKANETIGLFERMLAHGLKPD 471



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  +   TF S+L  C  L A+  G ++H  +     + N  + S L+ +Y+    I  A
Sbjct: 265 GFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSA 324

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VF +M  +   +  W +++ GY + G  E+A+ ++F+M+  GVEPD FT   V+ +CA
Sbjct: 325 ETVFKRMPQKNVIS--WTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCA 382

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  +  G + H  A+  G      V NAL+ +Y KCG    +  +F  +  +D +S+ +
Sbjct: 383 NLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTA 442

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR- 321
           +L GY   G   E   +F  M+ +G  PD V    +L   + A L+  G Q    +++  
Sbjct: 443 LLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEH 502

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           G+   +     +I +  + G+L++A    ++MP   DVV W +++ +
Sbjct: 503 GIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSS 549



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 101/194 (52%), Gaps = 6/194 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     T  S++ +C  L ++E G + H     + L     +S+ L+ LY   G  +
Sbjct: 364 RNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTE 423

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            +H++F +M+ R   +  W +L++GYA+ G+  + I L+ +M   G++PD  TF  VL A
Sbjct: 424 NSHRLFTEMNIRDEVS--WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSA 481

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRI-GNKDL 260
           C+  GL+  G + + +++    G    V     ++D+  + G + +AR   + +  + D+
Sbjct: 482 CSRAGLVEKGLQ-YFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDV 540

Query: 261 ISYNSMLTGYIHHG 274
           + + ++L+    HG
Sbjct: 541 VGWATLLSSCRVHG 554



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 44/172 (25%)

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372
           ++H  +L+   + +  ++N+LI  Y K G L  A  +FDH+PQ ++ SWN+I+  +SK  
Sbjct: 26  KLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSK-- 83

Query: 373 EALIYFEQME--------RDGV-------------------------LPD------HLTF 393
             L    QM+        RDGV                         L D       +TF
Sbjct: 84  --LGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITF 141

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            ++L  C+    V +G R  +  + K+G    V   + +V++Y + GLI +A
Sbjct: 142 STMLILCSKFRCVDLG-RQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDA 192


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 172/464 (37%), Positives = 251/464 (54%), Gaps = 20/464 (4%)

Query: 71  ALDSIIQDLESSVQ-NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
            L+  +  L+  VQ N +T+ + T AS L +        HG+ + R   T++        
Sbjct: 280 GLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDV-----AFC 334

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+++YA+ G++ +A  VF +M  R A +  W ++ISGY + G  + A+ +Y  ME   
Sbjct: 335 NSLIQMYASLGMMGQARTVFSRMDTRDAMS--WTAMISGYEKNGFPDKALEVYALMEVNN 392

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD  T    L ACA LG + VG K+H  A   GF     V NAL++MYAK   I KA 
Sbjct: 393 VSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAI 452

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI-----LAN 304
            VF  +  KD++S++SM+ G+  +    EA   FR M+    D  P +++ I      A 
Sbjct: 453 EVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA---DVKPNSVTFIAALAACAA 509

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              LR G ++H  VLR G+ ++  + N+LI +Y K G+   A   F     KDVVSWN +
Sbjct: 510 TGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIM 569

Query: 365 IH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I    AH     AL +F QM + G  PD +TFV+LL AC+  G V  G  LF  M +KY 
Sbjct: 570 IAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYS 629

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P ++HYACMV+L  R G + EAY+ I E M       VWGALL  C +H +V +GE A
Sbjct: 630 IVPNLKHYACMVDLLSRVGQLTEAYNFINE-MPITPDAAVWGALLNGCRIHRHVELGELA 688

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A+ + ELEP++     LL  +Y +AG  D + RV + + ++GL+
Sbjct: 689 AKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLD 732



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 212/403 (52%), Gaps = 15/403 (3%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           LESS +       + + +L   C   +AVE G++               + + +L +   
Sbjct: 85  LESSAE---PPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVR 141

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
           FG    A +VF +M  R  F+  WN ++ GY + G  E+A+ LY +M   GV PD +TFP
Sbjct: 142 FGETWHAWRVFAKMPERDVFS--WNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFP 199

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL++C G+   R+G +VH   +RFGF  +  VLNAL+ MYAKCGD+V AR VFD +   
Sbjct: 200 CVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVM 259

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVH 315
           D IS+N+M+ G+  +G      ++F  M+ +   P+ + I+S+   + LL       ++H
Sbjct: 260 DCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMH 319

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
           G  ++RG   D+   NSLI +Y+  G + QA  +F  M  +D +SW ++I  + K+    
Sbjct: 320 GLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPD 379

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +AL  +  ME + V PD +T  S L+ACA LGS+ VG +L   + E  G    V     +
Sbjct: 380 KALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE-LAESKGFMSYVVVTNAL 438

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA-CYLHGN 474
           + +Y ++  ID+A    V K   E   V W +++   C+ H N
Sbjct: 439 LEMYAKSKRIDKAIE--VFKCMPEKDVVSWSSMIAGFCFNHRN 479


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/433 (33%), Positives = 243/433 (56%), Gaps = 15/433 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     TF S+L+  ++ +  EHG ++H  +  +    N  +++ L+ +Y + G +D+A
Sbjct: 209 GIKPDATTFVSVLDG-WKGEG-EHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDA 266

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG---VEPDQFTFPRVLK 202
             VFD ++ +T  +  WN++++ YA+ G Y  A+ L+++M+E     VEP+  TF  +L 
Sbjct: 267 RYVFDGIAEKTVVS--WNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLV 324

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA  G +  G K+H +    G      V  AL++MY++CG++V A++VFD + +K+L+S
Sbjct: 325 ACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVS 384

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N ++  Y   G   EA  + + M L G  PD     S+L   + +  L  G  +H  + 
Sbjct: 385 WNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIA 444

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHMPQKDVVSWNSIIHAHSKD---HEAL 375
             G+E D  I  +LI +Y K G L+QA  +F D   ++++V+WNS++ A        + +
Sbjct: 445 ASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCV 504

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
                M  +G++PD LTF+S+L AC+H GS++ G  LF      YGI+   +HY C+V++
Sbjct: 505 EIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDI 564

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GR G ++EA   ++ +M F+A+ V W  LL AC +H +   G  AA  + EL+P N   
Sbjct: 565 LGRVGRLEEAQE-VLNRMPFQANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAP 623

Query: 496 FELLIKIYGNAGR 508
           + LL  ++  AGR
Sbjct: 624 YALLSTMFSVAGR 636



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 212/424 (50%), Gaps = 22/424 (5%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           S  ++   +   + AS+L  C   + +    +    I  +    ++ + + L++ Y   G
Sbjct: 2   SGERDATAIAISSHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCG 61

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            + +A +VFD++  R  F+  W  ++  YA+ G   +A+ L+ +++  G+  D  T    
Sbjct: 62  SVRDAREVFDRIQRRNIFS--WTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSA 119

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           LKACA  G +  G  +H  A   G+  +  V  ALV MY KCG + +A+ VF  +  ++ 
Sbjct: 120 LKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNR 179

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-ASLLRIGAQVHGWVL 319
           +S+N+ML  Y  +G   EA  ++R M   G  PD     S+L         G ++H  VL
Sbjct: 180 VSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEHGTRIHDQVL 239

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
             G   +  +AN+L+ +Y   G++D A ++FD + +K VVSWN+++ A++++    +A+ 
Sbjct: 240 ESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVD 299

Query: 377 YF---EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
            F   ++M R  V P+ +TFV+LL ACA  G ++ G ++ +  V   G+   +     ++
Sbjct: 300 LFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHA-EVASLGLLSTLSVGGALI 358

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL--YACYLHGNVCMGETAAQKLFE 487
           N+Y   G      ++++ K  F++ P    V W  L+  YA    G   +G     +L  
Sbjct: 359 NMYSECG------NLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEG 412

Query: 488 LEPD 491
           L+PD
Sbjct: 413 LKPD 416


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/482 (31%), Positives = 252/482 (52%), Gaps = 41/482 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYAT--- 138
           V  G+   + T AS +  C  L  + HG ++H   I    L  +  + + L+  YA    
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 139 -------FGLIDE-----------------AHQVFDQMSNRTAFA------FPWNSLISG 168
                  FG+I +                 +H+   ++ +   F         WN L++G
Sbjct: 414 VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           + + G+ + A+  + +M   G++P+  T    L AC  +  +++G+++H   +R      
Sbjct: 474 FTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELS 533

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V +AL+ MY+ C  +  A +VF  +  +D++ +NS+++     G  V A D+ R M L
Sbjct: 534 TGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 593

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +  + + V + S L   S    LR G ++H +++R G++    I NSLI +Y + G + +
Sbjct: 594 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQK 653

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +  +FD MPQ+D+VSWN +I     H    +A+  F+Q    G+ P+H+TF +LLSAC+H
Sbjct: 654 SRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSH 713

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G ++ G + F +M  +Y + P VE YACMV+L  RAG  +E    I EKM FE +  VW
Sbjct: 714 SGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI-EKMPFEPNAAVW 772

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           G+LL AC +H N  + E AA+ LFELEP +  N+ L+  IY  AGR +D  ++  ++ +R
Sbjct: 773 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 832

Query: 523 GL 524
           G+
Sbjct: 833 GV 834



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 223/487 (45%), Gaps = 75/487 (15%)

Query: 21  GSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLE 80
            S N +S+  R+      +R RIT FS         +L N        L ++D    D  
Sbjct: 36  ASTNTKSQNLRKLTN---ARQRITGFSGGGSVHRNGVLNNAAML----LSSMDLTNPD-- 86

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
                      E +AS+L+ C +L  +  G ++H  +  N +   + + S+LL +Y   G
Sbjct: 87  --------ECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTG 138

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +++A ++FD+MS R  F+  W +++  Y  LG+YE+ I L++ M  EGV PD F FP+V
Sbjct: 139 CVEDARRMFDKMSERNVFS--WTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKV 196

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
            KAC+ L   RVG+ V+   +  GF  +  V  +++DM+ KCG +  AR  F+ I  KD+
Sbjct: 197 FKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV 256

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
             +N M++GY   G   +A      M L+G  PD V                    W   
Sbjct: 257 FMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT-------------------W--- 294

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-----QKDVVSWNSIIHAHSK---DH 372
                     N++I  Y++ G+ ++A   F  M      + +VVSW ++I    +   D 
Sbjct: 295 ----------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL  F +M  +GV P+ +T  S +SAC +L  ++ G  +    ++   +   +     +
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 433 VNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL- 488
           V+ Y +   ++ A   + MI      +   V W A+L    L G+    E A + L E+ 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIK-----QTDLVSWNAMLAGYALRGS---HEEAIELLSEMK 456

Query: 489 ----EPD 491
               EPD
Sbjct: 457 FQGIEPD 463


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 237/439 (53%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
              S L+    L +   G  +H      L      +   LL +YA  G I++AH +F+ +
Sbjct: 251 VLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMI 310

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +       W+ LIS YA+  + E A  ++ +M    V P++F+   VL+ACA +  + +
Sbjct: 311 PHDDVIL--WSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLEL 368

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H  A++ G+  + FV NAL+DMYAKC ++  +  +F  + + + +S+N+++ GY  
Sbjct: 369 GEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQ 428

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G   +A  +F  M         V  SS+L   AN S ++   Q+H  + +     D  +
Sbjct: 429 SGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIV 488

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            NSLI  Y+K G +  A  +F+ + + DVVSWNSII A   H +   AL  F++M +  +
Sbjct: 489 CNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDI 548

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             + +TFVSLLS C   G V  G  LF+ M+  + I P +EHY C+V L GRAG + +A 
Sbjct: 549 KANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDAL 608

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + +    SP+VW ALL +C +H NV +G  AA+K+ ++EP +E  + LL  +Y  A
Sbjct: 609 KFIGD-IPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAA 667

Query: 507 GRLDDVERVERMLVDRGLE 525
           G LD+V    + + + G++
Sbjct: 668 GILDEVALWRKSMRNVGVK 686



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 160/293 (54%), Gaps = 8/293 (2%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           LL  YA  G +  A ++FD M  R   +F   +L+ GYA  GE+E+A+ L+ +++ EG E
Sbjct: 88  LLNFYAKLGPLATARRLFDGMPERNRVSFV--TLMQGYALRGEFEEALELFRRLQREGHE 145

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            + F    +LK    +    +   +H  A + G   + FV  AL+D Y+ CG +  AR V
Sbjct: 146 VNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCV 205

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR-- 309
           FD I  KD +++ +M++ Y  + +   A + F  M + GF P+P  ++S L  A  L   
Sbjct: 206 FDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSA 265

Query: 310 -IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +G  +HG  ++   + +  +  +L+ +Y+K G ++ A  +F+ +P  DV+ W+ +I  +
Sbjct: 266 LLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRY 325

Query: 369 S---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           +   ++ +A   F +M R  V+P+  +   +L ACA++  +++GE++ ++ ++
Sbjct: 326 AQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIK 378



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 158/352 (44%), Gaps = 32/352 (9%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG--FGFDGFVLNALVDMYAKCGDIVKART 250
           D +   R L+ C   G  R G  VH   V+ G     D F  N L++ YAK G +  AR 
Sbjct: 44  DSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARR 103

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA-----NA 305
           +FD +  ++ +S+ +++ GY   G   EA ++FR +   G + +   +++IL      +A
Sbjct: 104 LFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDA 163

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             L  G  +H    + G + +  +  +LI  YS  G +  A  +FD +  KD V+W +++
Sbjct: 164 PGLACG--IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YG 421
             +S++     AL  F +M   G  P+     S L A   L S  +G+ +    V+  Y 
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYD 281

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCM 477
             P V     ++++Y + G I++A+++      FE  P    ++W  L+     +   C 
Sbjct: 282 TEPHVG--GALLDMYAKCGDIEDAHAI------FEMIPHDDVILWSFLISR---YAQSCQ 330

Query: 478 GETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            E A +    +       NE +   +++   N   L+  E++  + +  G E
Sbjct: 331 NEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYE 382


>gi|242089513|ref|XP_002440589.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
 gi|241945874|gb|EES19019.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
          Length = 613

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 233/418 (55%), Gaps = 10/418 (2%)

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           +H L  +  L     + + L+  Y        A +VFD M++R      W +++SG A  
Sbjct: 151 VHGLAVSCGLDAEVSVGNALITAYFECSSPGSAERVFDAMADRNVVT--WTAMVSGMARA 208

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
             Y ++++L+ QM    V+ ++ ++   L ACAG      G+++H   V+ GF  D  V 
Sbjct: 209 ERYRESLSLFRQMRH-AVDANRASYSSSLLACAGSLAASEGQQIHGLVVKAGFETDLHVE 267

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           + L+DMY+KCG +  A  VF    + D +    +L G+  +GL  +AF++F  M+  G D
Sbjct: 268 SELMDMYSKCGLMEDALRVFRSCQDPDEVFLTVILVGFAQNGLEEKAFELFAEMVGKGID 327

Query: 293 PDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
            D   +S++L     ++   +G Q+H  V+++    +  + N LI +YSK G+L ++  +
Sbjct: 328 IDANMVSAVLGAFGASAPFALGKQIHALVIKKCFGGNTYVCNGLINMYSKCGELQESIEV 387

Query: 350 FDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
           FD  P K+ V+WNSII A   H    E    FE M+ DGV P ++TF+SLL  C+H+GS 
Sbjct: 388 FDGTPSKNTVTWNSIIAAFARHGHGSEVFGLFESMKADGVKPTNVTFLSLLHGCSHVGSA 447

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G  + + M  +YGI P+VEHYAC+V++ GRA  +D+A + I E   F+ S ++W AL+
Sbjct: 448 SKGLEILNSMSSQYGIHPKVEHYACVVDMLGRASQLDDAKAFI-EDGPFKDSALLWQALM 506

Query: 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            AC  H +  +G+ AA+KL  L+PD    + LL  IY + GR DD  R+ + + ++GL
Sbjct: 507 GACSFHKDSEVGKYAAEKLLLLDPDCTAAYVLLSNIYSSEGRWDDRARILKRMREKGL 564



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 145/308 (47%), Gaps = 21/308 (6%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ +     +++S L  C    A   G ++H L+       +  + S+L+ +Y+  GL+
Sbjct: 221 MRHAVDANRASYSSSLLACAGSLAASEGQQIHGLVVKAGFETDLHVESELMDMYSKCGLM 280

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++A +VF    +          ++ G+A+ G  E A  L+ +M  +G++ D      VL 
Sbjct: 281 EDALRVFRSCQDPDEVFL--TVILVGFAQNGLEEKAFELFAEMVGKGIDIDANMVSAVLG 338

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A        +G+++H   ++  FG + +V N L++MY+KCG++ ++  VFD   +K+ ++
Sbjct: 339 AFGASAPFALGKQIHALVIKKCFGGNTYVCNGLINMYSKCGELQESIEVFDGTPSKNTVT 398

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG------ 316
           +NS++  +  HG   E F +F  M  +G  P  V   S+L   S   +G+   G      
Sbjct: 399 WNSIIAAFARHGHGSEVFGLFESMKADGVKPTNVTFLSLLHGCS--HVGSASKGLEILNS 456

Query: 317 ----WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD-VVSWNSIIHAHS-- 369
               + +   VE   C+ + L     +  +LD A    +  P KD  + W +++ A S  
Sbjct: 457 MSSQYGIHPKVEHYACVVDML----GRASQLDDAKAFIEDGPFKDSALLWQALMGACSFH 512

Query: 370 KDHEALIY 377
           KD E   Y
Sbjct: 513 KDSEVGKY 520



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 192/438 (43%), Gaps = 45/438 (10%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTN------------LLRKNKGISSKLLRLYATFGL 141
            + LL  C +   +  G  LH ++  N             L     + + L+ +YA  G 
Sbjct: 14  LSGLLARCGRAGDLRLGTALHAVVAKNPAHFRLCPHRSASLHHVLAVWNSLVAMYARCGR 73

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
             +A + FD+M  R + +  WNSL++  A   +    +    +        D  T   VL
Sbjct: 74  RGDAARAFDEMPLRDSVS--WNSLLAASASAADALALLRRMLRAAPGAAACDHATLTTVL 131

Query: 202 KACAGLGLIRVGEK-----VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
            ACA               VH  AV  G   +  V NAL+  Y +C     A  VFD + 
Sbjct: 132 SACARADGGGGTGAASLPVVHGLAVSCGLDAEVSVGNALITAYFECSSPGSAERVFDAMA 191

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI-SSILANASLLRI--GAQ 313
           +++++++ +M++G        E+  +FR M  +  D +  +  SS+LA A  L    G Q
Sbjct: 192 DRNVVTWTAMVSGMARAERYRESLSLFRQM-RHAVDANRASYSSSLLACAGSLAASEGQQ 250

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           +HG V++ G E DL + + L+ +YSK G ++ A  +F      D V    I+   ++   
Sbjct: 251 IHGLVVKAGFETDLHVESELMDMYSKCGLMEDALRVFRSCQDPDEVFLTVILVGFAQNGL 310

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHY 429
           + +A   F +M   G+  D     ++L A        +G+++ +++++K +G +     Y
Sbjct: 311 EEKAFELFAEMVGKGIDIDANMVSAVLGAFGASAPFALGKQIHALVIKKCFGGNT----Y 366

Query: 430 AC--MVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL--YACYLHGNVCMGETA 481
            C  ++N+Y + G + E+  +      F+ +P    V W +++  +A + HG+   G   
Sbjct: 367 VCNGLINMYSKCGELQESIEV------FDGTPSKNTVTWNSIIAAFARHGHGSEVFGLFE 420

Query: 482 AQKLFELEPDNEHNFELL 499
           + K   ++P N     LL
Sbjct: 421 SMKADGVKPTNVTFLSLL 438


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 239/441 (54%), Gaps = 11/441 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF    +    L++   G ++H L        +  +      +Y+  GL +EA ++FD+M
Sbjct: 110 TFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEM 169

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      WN+ +S     G Y+DA+  + +   EG EP+  TF   L ACAG   +R+
Sbjct: 170 PERNIAT--WNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRL 227

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   ++ GF  D  V N L+D Y KC  +  +  +F  I   + +S+ SM+  Y+ 
Sbjct: 228 GRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQ 287

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +    +A  +F      G +P    +SS+L   A  S+L +G  VH   ++  V  ++ +
Sbjct: 288 NDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFV 347

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQMERDG- 385
            ++L+ +Y K G ++ A   FD MP++++V+WN++I  +AH    + A+  F++M     
Sbjct: 348 GSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSH 407

Query: 386 -VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V P+++TFV +LSAC+  GSV VG  +F  M  +YGI P  EHYAC+V+L GRAG++++
Sbjct: 408 RVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQ 467

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           AY  I +KM    +  VWGALL A  + G   +G+ AA  LFEL+P +  N  LL  ++ 
Sbjct: 468 AYQFI-KKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFA 526

Query: 505 NAGRLDDVERVERMLVDRGLE 525
            AGR ++   V + + D G++
Sbjct: 527 AAGRWEEATLVRKEMKDVGIK 547



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 194/381 (50%), Gaps = 12/381 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG-ISSKLLRLYATFGLIDEAHQVFDQ 151
           + ASL+E+    +    G   H  I   L       I + L+ +Y+     + A  +   
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSL 67

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
             NR+     W +LI+G  + G +  A+  +  M  + ++P+ FTFP   KA   L    
Sbjct: 68  TPNRSVVT--WTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPL 125

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           VG++VH  AV+ G   D FV  +  DMY+K G   +AR +FD +  +++ ++N+ L+  +
Sbjct: 126 VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSV 185

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
             G   +A   F      G++P+ +   + L   A AS LR+G Q+HG+VL+ G E D+ 
Sbjct: 186 LEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVS 245

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           +AN LI  Y K  ++  +  +F  + + + VSW S+I ++ ++ E   A + F +  ++G
Sbjct: 246 VANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEG 305

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P      S+LSACA L  ++VG+ + ++ V K  +   +   + +V++YG+ G I++A
Sbjct: 306 IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV-KACVVGNIFVGSALVDMYGKCGSIEDA 364

Query: 446 YSMIVEKMEFEASPVVWGALL 466
                E    E + V W A++
Sbjct: 365 ERAFDEMP--ERNLVTWNAMI 383



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 7/190 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI       +S+L  C  L  +E G  +H L     +  N  + S L+ +Y   G I+
Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 362

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME--EEGVEPDQFTFPRVL 201
           +A + FD+M  R      WN++I GYA  G+ + A+ L+ +M      V P+  TF  VL
Sbjct: 363 DAERAFDEMPERNLVT--WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNKD 259
            AC+  G + VG ++  +++R  +G +        +VD+  + G + +A     ++  + 
Sbjct: 421 SACSRAGSVNVGMEI-FESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRP 479

Query: 260 LISYNSMLTG 269
            +S    L G
Sbjct: 480 TVSVWGALLG 489


>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Glycine max]
          Length = 722

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 248/449 (55%), Gaps = 18/449 (4%)

Query: 83  VQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           +Q G    TE TF S++ +C  L+A   G +               +++ ++ +Y+ FG 
Sbjct: 272 MQKGCFDPTEVTFVSVMSSCSSLRA---GCQAQSQAIKMGFVGCVAVNNAMMTMYSGFGE 328

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           + E   +F+ M  R   +  WN ++S + +    E+A+  Y +M  EG+EPD+FT+  +L
Sbjct: 329 VIEVQNIFEGMEERDVVS--WNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLL 386

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A   L   +V E +H    + G      VLNALV  Y + G I +A  +F  +  K LI
Sbjct: 387 AATDSL---QVVEMIHSLLCKSGL-VKIEVLNALVSAYCRHGKIKRAFQIFSGVPYKSLI 442

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWV 318
           S+NS+++G++ +G  ++  + F  ++     P+  ++S   SI ++ S +  G QVHG++
Sbjct: 443 SWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSLVLSICSSMSAMSHGKQVHGYI 502

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
           LR G   ++ + N+L+ +Y+K G LD+A  +FD M ++D ++WN+II A   H +  EA+
Sbjct: 503 LRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVERDTITWNAIISAYAQHGRGEEAV 562

Query: 376 IYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
             FE M+   G+ PD  TF S+LSAC+H G V  G R+F  MV+ YG  P V+H++C+V+
Sbjct: 563 CCFEAMQTSPGIKPDQATFTSVLSACSHAGLVDDGIRIFDTMVKVYGFVPSVDHFSCIVD 622

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GR+G +DEA  +I        S + W +L  AC  HGN+ +G T A+ + E + +N  
Sbjct: 623 LLGRSGYLDEAERVIKSGYFGAHSNICW-SLFSACAAHGNLGLGRTVARLILERDHNNPS 681

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRG 523
            + LL  I   AG+ ++   +  M+ + G
Sbjct: 682 VYVLLSNICAAAGQWEEAANLREMMREFG 710



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 211/403 (52%), Gaps = 19/403 (4%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + LL   A    ++ A +VFD +         WN++I+G AE G  + A  L+  M + G
Sbjct: 116 TTLLSACAKLDSVEHALKVFDGIPK--GHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMG 173

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V+ D++TF  +L  C+ L L   G  VH   ++ GF     V+N+L+ MY KCG +V A 
Sbjct: 174 VKADKYTFATMLSLCS-LELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDAC 232

Query: 250 TVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            VF+     G++D +SYN+M+ G+       +AF IFR M    FDP  V   S++++ S
Sbjct: 233 EVFEEAEEGGSRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCS 292

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN---S 363
            LR G Q     ++ G    + + N+++ +YS  G++ +   +F+ M ++DVVSWN   S
Sbjct: 293 SLRAGCQAQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGMEERDVVSWNIMVS 352

Query: 364 IIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           +    + + EA++ + +M R+G+ PD  T+ SLL+A     S++V E + S++  K G+ 
Sbjct: 353 MFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLLAA---TDSLQVVEMIHSLLC-KSGL- 407

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
            ++E    +V+ Y R G I  A+  I   + ++ S + W +++    ++G+   G     
Sbjct: 408 VKIEVLNALVSAYCRHGKIKRAFQ-IFSGVPYK-SLISWNSIISGFLMNGHPLQGLEQFS 465

Query: 484 KLF--ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            L   +++P N ++  L++ I  +   +   ++V   ++  G 
Sbjct: 466 ALLSTQVKP-NAYSLSLVLSICSSMSAMSHGKQVHGYILRHGF 507



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 168/405 (41%), Gaps = 55/405 (13%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           N +++  A   ++  ++ L+         PD +     + A A       G ++H  AVR
Sbjct: 15  NHMLAALARSNQHTQSLKLFVHAHSS-FTPDHYILSTAITAAANARRAAFGAQLHALAVR 73

Query: 223 FGFGFDGFVLNALVDMYAK----------------CGD----------------IVKART 250
            G G    V N+L+ +YAK                C D                +  A  
Sbjct: 74  TGLGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAKLDSVEHALK 133

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--LL 308
           VFD I    +  +N+++TG    G    AF +FR M   G   D    +++L+  S  L 
Sbjct: 134 VFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATMLSLCSLELF 193

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSII 365
             G  VH  V++ G      + NSLI +Y K G +  AC +F+   +   +D VS+N++I
Sbjct: 194 DYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMI 253

Query: 366 HAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
              +   +  +A + F  M++    P  +TFVS++S+C+   S++ G +  S  + K G 
Sbjct: 254 DGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCS---SLRAGCQAQSQAI-KMGF 309

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV---CMGE 479
              V     M+ +Y   G + E  + I E ME E   V W  ++ + +L  N+    M  
Sbjct: 310 VGCVAVNNAMMTMYSGFGEVIEVQN-IFEGME-ERDVVSWN-IMVSMFLQENLEEEAMLS 366

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
               +   +EPD      LL         L  VE +  +L   GL
Sbjct: 367 YLKMRREGIEPDEFTYGSLL----AATDSLQVVEMIHSLLCKSGL 407


>gi|302768953|ref|XP_002967896.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
 gi|300164634|gb|EFJ31243.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
          Length = 471

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 240/431 (55%), Gaps = 6/431 (1%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L+  C   + +  G ++H+ I       ++ +++ L+++Y   G  + A  VFD++++R 
Sbjct: 5   LMRFCGSRQLLGEGKRIHQHIVDRGHGDDRFLANLLVQMYGQCGAAEIARAVFDRIADRN 64

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
            F+  W  +I+ YA+ G    A+ L+ +M+  G   D+     +L  CA L L+  G+ +
Sbjct: 65  VFS--WTLMIAAYAQNGHDAAALRLFREMDLHGEPADRIVLVEILGVCARLELLAQGQTI 122

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H   V  GF  D     A+ +MYA+CG + +AR +FDR+  K ++S+N+M+T Y   G  
Sbjct: 123 HARIVALGFDADTVAATAIFNMYARCGFLRRARELFDRLEEKSVVSWNAMITAYARTGQA 182

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSL 333
            +A DIFR +   G + D ++ S +LA  ++   L  G  +H  +   G E  L +AN L
Sbjct: 183 RQALDIFRRLDQEGIEADEMSYSGLLAAFAMRQSLDKGRILHARIKACGFEAMLQVANPL 242

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTF 393
           I +Y K G +++A  +FD +P K++VSWN+I+ A++ +       +   +  + PD ++F
Sbjct: 243 INMYGKCGCVEEARRIFDAVPSKNIVSWNTILAAYAGNGRVTEALDLFAKIAMPPDWISF 302

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
             +L AC+H G V         M  ++GI PR  HY+ MV ++G+AG ++EA  +I   M
Sbjct: 303 CVVLQACSHAGLVDEAWDFLLSMRSQHGIEPRRAHYSAMVEIFGKAGKLEEAERLIA-AM 361

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
             E   V+W +LL AC +HG+   G  AA K+ EL+PD    + LL  ++  AGRLD+++
Sbjct: 362 PVEPDAVIWRSLLGACKIHGDTERGTRAALKVIELKPDESGPYILLSNLHAAAGRLDELD 421

Query: 514 RVERMLVDRGL 524
           +V +++ +R L
Sbjct: 422 KVRKLMKERRL 432



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 102/208 (49%), Gaps = 13/208 (6%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QALD I + L+   Q GI     +++ LL      ++++ G  LH  I          ++
Sbjct: 184 QALD-IFRRLD---QEGIEADEMSYSGLLAAFAMRQSLDKGRILHARIKACGFEAMLQVA 239

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +Y   G ++EA ++FD + ++   +  WN++++ YA  G   +A+ L+ ++    
Sbjct: 240 NPLINMYGKCGCVEEARRIFDAVPSKNIVS--WNTILAAYAGNGRVTEALDLFAKI---A 294

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDMYAKCGDIVK 247
           + PD  +F  VL+AC+  GL+       L ++R   G +      +A+V+++ K G + +
Sbjct: 295 MPPDWISFCVVLQACSHAGLVDEAWDFLL-SMRSQHGIEPRRAHYSAMVEIFGKAGKLEE 353

Query: 248 A-RTVFDRIGNKDLISYNSMLTGYIHHG 274
           A R +       D + + S+L     HG
Sbjct: 354 AERLIAAMPVEPDAVIWRSLLGACKIHG 381


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 242/439 (55%), Gaps = 45/439 (10%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA-IALYFQMEEE 188
           S+ +   ++ G    A+ +F  +++     + +N++I   +    +  A I LY  ++  
Sbjct: 14  SRFIHACSSLGFYSYAYSLFTSITHAPDI-YLYNNIIKALSSSPTHPKASIFLYNNIQLA 72

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-----------------FG----- 226
           G+ PD ++FP  LKA      I+ G ++H  ++RFG                 FG     
Sbjct: 73  GLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCIC 132

Query: 227 -----FDGFVL--------NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
                FDG  +        NA+++ YAK GD+  AR +F+R+  +++IS+ +++TGY   
Sbjct: 133 DARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQA 192

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV-EWDLCI 329
               +A  +FR M L   +PD +A+   L   A    L +G  +  ++ R G+   ++ +
Sbjct: 193 NRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPL 252

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N+LI +Y+K G +  A  +F++M  K +++W ++I     H    EAL  F +MER  V
Sbjct: 253 NNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARV 312

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+++LSAC+H+G V+ G   F+ M+ +YGI P++EHY CM++L GRAG + EA 
Sbjct: 313 KPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQ 372

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           +++ + M FE + V+WG+LL AC  HG+  +GE A Q L ELEPDN  N+ LL  IY + 
Sbjct: 373 TLLAQ-MPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASR 431

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++   V +++ D G++
Sbjct: 432 GRWNESRVVRKVMWDAGVK 450



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 97/181 (53%), Gaps = 7/181 (3%)

Query: 98  LETCYQLKAVEHGIKL-HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L  C +L A+E G  + H +    LL  N  +++ L+ +YA  G I  A QVF+ M+++T
Sbjct: 221 LTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKT 280

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                W ++I+G A  G   +A+ ++ +ME   V+P+  TF  +L AC+ +GL++ G + 
Sbjct: 281 IIT--WTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTG-RW 337

Query: 217 HLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTGYIHH 273
           + + +   +G +  +     ++D+  + G + +A+T+  ++    + + + S+L     H
Sbjct: 338 YFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTH 397

Query: 274 G 274
           G
Sbjct: 398 G 398


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 255/474 (53%), Gaps = 53/474 (11%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG---LIDEAHQVFDQMS 153
           +LE C  L   +   ++H  I    L+++  + +KLLRL        L      +F Q+ 
Sbjct: 14  ILERCSSLNQAK---EVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
               FA  W +LI  YA  G    A++ Y  M +  V P  FTF  +  ACA +    +G
Sbjct: 71  TPNPFA--WTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALG 128

Query: 214 EKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFD------------------R 254
            ++H   +  G F  D +V NA++DMY KCG +  AR VFD                  R
Sbjct: 129 AQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTR 188

Query: 255 IGN-------------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           IG+             KD++++ +M+TGY  + + ++A ++FR +   G + D V +  +
Sbjct: 189 IGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGV 248

Query: 302 LANASLLRIGAQVHGWVLRR-------GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
           ++  +  ++GA  +   +R        GV  ++ + ++LI +YSK G +++A  +F  M 
Sbjct: 249 ISACA--QLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMR 306

Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +++V S++S+I     H +   A+  F  M   GV P+H+TFV +L+AC+H G V  G++
Sbjct: 307 ERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQ 366

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           LF+ M + YG++P  E YACM +L  RAG +++A  + VE M  E+   VWGALL A ++
Sbjct: 367 LFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQL-VETMPMESDGAVWGALLGASHV 425

Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           HGN  + E A+++LFELEPDN  N+ LL   Y +AGR DDV +V ++L ++ L+
Sbjct: 426 HGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLK 479


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 248/430 (57%), Gaps = 11/430 (2%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           S+L +C  L+A+E G ++H       L  N+ + + L+ +YA   L+ +A +VFD M+ +
Sbjct: 244 SVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQ 303

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
              ++  N++I GY+   +  +A+ L+ +M      P   TF  +L   A L  + + ++
Sbjct: 304 NVISY--NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQ 361

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   ++ G   D F  +AL+D+Y+KC  +  AR VF+ +  KD++ +N+M  GY  H  
Sbjct: 362 IHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLE 421

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANS 332
             EA  ++  +  +   P+    ++++  AS    LR G Q H  +++ G+++   + N+
Sbjct: 422 NEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 481

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPD 389
           L+ +Y+K G +++A  +F+    +DVV WNS+I  H++     EAL  F +M ++G+ P+
Sbjct: 482 LVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN 541

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           ++TFV++LSAC+H G V+ G   F+ M   +GI P  EHYAC+V+L GR+G + EA   I
Sbjct: 542 YVTFVAVLSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFI 600

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509
            EKM  E + +VW +LL AC + GNV +G+ AA+     +P +  ++ LL  I+ + G  
Sbjct: 601 -EKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMW 659

Query: 510 DDVERV-ERM 518
            DV++V +RM
Sbjct: 660 ADVKKVRDRM 669



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 230/444 (51%), Gaps = 20/444 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            AS++  C QL  VE G +LH  +  +   ++  + + L+  Y+  G I+ A  VFDQ+ 
Sbjct: 40  LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLL 99

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +TA    W ++I+GY + G    ++ L+ QM E  V PD++    VL AC+ L  +  G
Sbjct: 100 EKTAVT--WTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 157

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H   +R G   D  V+N L+D Y KC  +   R +FD++  K++IS+ +M++GY+ +
Sbjct: 158 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 217

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIA 330
               EA  +F  M   G+ PD  A +S+L +   L     G QVH + ++  +E +  + 
Sbjct: 218 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVK 277

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVL 387
           N LI +Y+K   L  A  +FD M +++V+S+N++I  +S   K  EAL  F +M      
Sbjct: 278 NGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFP 337

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P  LTFVSLL   A L ++++ +++  +++ K G+S  +   + ++++Y +   + +A  
Sbjct: 338 PSLLTFVSLLGVSASLFALELSKQIHGLII-KXGVSLDLFAGSALIDVYSKCSYVKDARH 396

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL-----FELEPDNEHNFELLIKI 502
            + E+M  E   VVW A+ +    H    +    A KL     F  +  NE  F  LI  
Sbjct: 397 -VFEEMN-EKDIVVWNAMFFGYTQH----LENEEALKLYSTLQFSRQKPNEFTFAALITA 450

Query: 503 YGNAGRLDDVERVERMLVDRGLEF 526
             N   L   ++    LV  GL+F
Sbjct: 451 ASNLASLRHGQQFHNQLVKMGLDF 474



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 150/278 (53%), Gaps = 17/278 (6%)

Query: 173 GEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
           G  E+A+ ++  ++ + G  P++F    V++AC  LG++  G ++H   VR GF  D +V
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
             +L+D Y+K GBI  AR VFD++  K  +++ +++ GY   G    + ++F  M     
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 292 DPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD   +SS+L+  S+L     G Q+H +VLRRG E D+ + N LI  Y+K  ++     
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 349 LFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           LFD M  K+++SW ++I  +   S D EA+  F +M R G  PD     S+L++C  L +
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEA 254

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           ++ G +     V  Y I   +E      N + + GLID
Sbjct: 255 LEQGRQ-----VHAYTIKANLES-----NEFVKNGLID 282



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL     L A+E   ++H LI    +  +    S L+ +Y+    + +A  VF++M
Sbjct: 342 TFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 401

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +      WN++  GY +  E E+A+ LY  ++    +P++FTF  ++ A + L  +R 
Sbjct: 402 NEKDIVV--WNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRH 459

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++ H   V+ G  F  FV NALVDMYAKCG I +AR +F+    +D++ +NSM++ +  
Sbjct: 460 GQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQ 519

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ----VHGWVLRRGVEW 325
           HG   EA  +FR M+  G  P+ V   ++L   ++A  +  G      + G+ ++ G E 
Sbjct: 520 HGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEH 579

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             C+ + L     + GKL +A    + MP +   + W S++ A
Sbjct: 580 YACVVSLL----GRSGKLFEAKEFIEKMPIEPAAIVWRSLLSA 618


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 253/469 (53%), Gaps = 23/469 (4%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLR 134
           ++ L   V  G+     T +S+L  C  L+ +  G +LH     N  L +N  + S L+ 
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVD 346

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPD 193
           +Y     +    +VFD M +R      WN++I+GY++    ++A+ L+  MEE  G+  +
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN 404

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             T   V+ AC   G     E +H   V+ G   D FV N L+DMY++ G I  A  +F 
Sbjct: 405 STTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464

Query: 254 RIGNKDLISYNSMLTGYI---HHG---LLVEAFD-----IFRGMILNGFDPDPVAISSIL 302
           ++ ++DL+++N+M+TGY+   HH    LL+         + +G       P+ + + +IL
Sbjct: 465 KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  S L  G ++H + ++  +  D+ + ++L+ +Y+K G L  +  +FD +PQK+V+
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WN II A   H    EA+     M   GV P+ +TF+S+ +AC+H G V  G R+F VM
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-VEKMEFEASPVVWGALLYACYLHGNV 475
              YG+ P  +HYAC+V+L GRAG I EAY ++ +   +F  +   W +LL A  +H N+
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG-AWSSLLGASRIHNNL 703

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +GE AAQ L +LEP+   ++ LL  IY +AG  D    V R + ++G+
Sbjct: 704 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 202/397 (50%), Gaps = 26/397 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS-----KLLRLYATFG 140
           GI      F +LL+    L+ +E G ++H     ++ +   G+ S      L+ LY   G
Sbjct: 92  GIKPDNYAFPALLKAVADLQDMELGKQIH----AHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
                ++VFD++S R   +  WNSLIS      ++E A+  +  M +E VEP  FT   V
Sbjct: 148 DFGAVYKVFDRISERNQVS--WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205

Query: 201 LKACAGLGL---IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           + AC+ L +   + +G++VH   +R G   + F++N LV MY K G +  ++ +    G 
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQV 314
           +DL+++N++L+    +  L+EA +  R M+L G +PD   ISS+L   S   +LR G ++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 315 HGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           H + L+ G ++ +  + ++L+ +Y    ++     +FD M  + +  WN++I  +S+   
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 371 DHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           D EAL+ F  ME   G+L +  T   ++ AC   G+    E +   +V K G+       
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV-KRGLDRDRFVQ 443

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             ++++Y R G ID A   I  KME +   V W  ++
Sbjct: 444 NTLMDMYSRLGKIDIAMR-IFGKME-DRDLVTWNTMI 478



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 14/332 (4%)

Query: 118 PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS---NRTAFAFPWNSLISGYAELGE 174
           P+ LL  ++     LLR   T    D A  V    S   +++     W  L+        
Sbjct: 18  PSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNL 77

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VLN 233
             +A+  Y  M   G++PD + FP +LKA A L  + +G+++H    +FG+G D   V N
Sbjct: 78  LREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVAN 137

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
            LV++Y KCGD      VFDRI  ++ +S+NS+++          A + FR M+    +P
Sbjct: 138 TLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEP 197

Query: 294 DPVAISSILANASL------LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
               + S++   S       L +G QVH + LR+G E +  I N+L+ +Y K GKL  + 
Sbjct: 198 SSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSK 256

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            L      +D+V+WN+++ +  ++    EAL Y  +M  +GV PD  T  S+L AC+HL 
Sbjct: 257 VLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 316

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            ++ G+ L +  ++   +       + +V++Y
Sbjct: 317 MLRTGKELHAYALKNGSLDENSFVGSALVDMY 348


>gi|29893615|gb|AAP06869.1| chloroplast import-associated channel protein homolog [Oryza sativa
            Japonica Group]
          Length = 1273

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/439 (36%), Positives = 243/439 (55%), Gaps = 42/439 (9%)

Query: 96   SLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
            + L  C  L  V  G  +H L+ T   L  +   ++ LL +Y+  GL+  A +VFD+M++
Sbjct: 856  TALRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMAS 915

Query: 155  RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            R      WN+L++ YA  G  E A+AL  +M   G+ PD  T+  V+             
Sbjct: 916  R-GDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVS------------ 962

Query: 215  KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
                     GF   G  L A        GD+V A  + D     D++++ S ++G + + 
Sbjct: 963  ---------GFALAGDDLMA--------GDLVGA--MKDDGFQPDVVTWTSRVSGSVLNF 1003

Query: 275  LLVEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
                A  +FR M++ G    P    IS+IL   AN + ++ G +VHG+ +  GVE +L +
Sbjct: 1004 QYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTV 1063

Query: 330  ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            +++L+ +Y+K G + +A  LFD MPQ+  V+WNS+I   +      EA+  F++M RDG 
Sbjct: 1064 SSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGA 1123

Query: 387  LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             PDHLTF ++L+AC++ G V+VG+ L+  M  +YG+ PR+EHYACMV+L GRAG +DEAY
Sbjct: 1124 KPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAY 1183

Query: 447  SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
              I   M  E    VWGALL AC  HGN+ + E AA +L  +EPDN  +  LL     NA
Sbjct: 1184 GFI-RAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASCLLLSSALANA 1242

Query: 507  GRLDDVERVERMLVDRGLE 525
            G+ DDV +++R++  R L+
Sbjct: 1243 GKQDDVFKIKRLVKRRRLK 1261



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 189/473 (39%), Gaps = 95/473 (20%)

Query: 98   LETCYQLKAVEHGIKLH-----RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            +   Y    VEHG  L      +  PT   R+    SS    L    GL  + +   DQ 
Sbjct: 747  VRNTYVYGFVEHGTDLGSSKDVKGNPTEFFRRVGHGSS--YGLGVKLGL-PQRYTGSDQR 803

Query: 153  SNRTAFAFPWNSLISGYAELGEYEDAIALYF-----QMEEEG-VEPDQFTFPRVLKACAG 206
                A    W   ++  +  G + D + L+F     Q    G V+P     P  L+ACA 
Sbjct: 804  QMCPAKTSSWMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAH 863

Query: 207  LGLIRVGEKVH-LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYN 264
            L  +  G  +H L   R     D     AL+DMY+KCG +  AR VFD + ++ D + +N
Sbjct: 864  LADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWN 923

Query: 265  SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
            ++L  Y  HGL   A  +   M   G  PD V  + +++  +L                 
Sbjct: 924  ALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFAL----------------A 967

Query: 325  WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM 381
             D  +A  L+     DG             Q DVV+W S +     + +   A   F  M
Sbjct: 968  GDDLMAGDLVGAMKDDGF------------QPDVVTWTSRVSGSVLNFQYGRARALFRAM 1015

Query: 382  ERDG--VLPDHLTFVSLLSACAHLGSVKVGERL--FSVMVEKYGISPRVEHYACMVNLYG 437
               G  VLP   T  ++L A A++  VK G+ +  +SV+    G+   +   + +V++Y 
Sbjct: 1016 MVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSVVA---GVEQELTVSSALVDMYA 1072

Query: 438  RAGLIDEAYSMIVEKMEFEASPVVWGALLY------------------------------ 467
            + GL+ EA  +  +KM  + S V W ++++                              
Sbjct: 1073 KCGLVLEARRLF-DKMP-QRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTF 1130

Query: 468  -----ACYLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
                 AC   G V +G+    A Q  + +EP  EH +  ++ + G AGRLD+ 
Sbjct: 1131 TAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEH-YACMVHLLGRAGRLDEA 1182



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 91   TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
            + T +++L     +  V+HG ++H       + +   +SS L+ +YA  GL+ EA ++FD
Sbjct: 1026 SATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFD 1085

Query: 151  QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            +M  R+     WNS+I G A  G  ++A+ L+ +M  +G +PD  TF  VL AC+  G++
Sbjct: 1086 KMPQRSTVT--WNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMV 1143

Query: 211  RVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSML 267
             VG K+   A++  +G +  + +   +V +  + G + +A      +    D   + ++L
Sbjct: 1144 EVG-KILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALL 1202

Query: 268  TGYIHHGLLVEAFDIFRGMILNGFDPDPVA----ISSILANA 305
                 HG  +E  ++    +L   +PD  A    +SS LANA
Sbjct: 1203 GACRSHG-NIELAELAASRLL-AVEPDNAASCLLLSSALANA 1242


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/437 (35%), Positives = 243/437 (55%), Gaps = 25/437 (5%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           A+ ++ C+    V+  I L   +P     KN    + ++  Y   G +DEA Q+ +QM  
Sbjct: 272 AAYVQNCH----VDEAISLFMEMP----EKNSISWTTVINGYVRMGKLDEARQLLNQMPY 323

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           R   A    ++ISGY +    +DA  ++ Q+       D   +  ++   +  G  R+ E
Sbjct: 324 RNVAAQ--TAMISGYVQNKRMDDARQIFNQISIR----DVVCWNTMIAGYSQCG--RMDE 375

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            +HL   +     D    N +V  YA+ G +  A  +F+ +  K+++S+NS+++G   +G
Sbjct: 376 ALHL--FKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNG 433

Query: 275 LLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             ++A   F  M   G  PD    +   S  A+ + L++G Q+H  V++ G   DL ++N
Sbjct: 434 SYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN 493

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +LI +Y+K G +  A  LF  +   DVVSWNS+I A++ +    EAL  F +ME +GV P
Sbjct: 494 ALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAP 553

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TFV +LSAC+H+G +  G +LF  MV+ Y I P  EHYACMV+L GRAG ++EA+  
Sbjct: 554 DEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQ- 612

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           +V  M+  A+  +WGALL AC +HGN+ + + AA+KL E EP    N+ LL  +   AGR
Sbjct: 613 LVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGR 672

Query: 509 LDDVERVERMLVDRGLE 525
            D+V RV R++ ++G E
Sbjct: 673 WDEVARVRRLMKEKGAE 689



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 186/440 (42%), Gaps = 77/440 (17%)

Query: 96  SLLETCYQLKA-VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +L+ TCY     +     L  L+P    + N    + ++  YA     DEA ++FD M  
Sbjct: 112 TLMITCYTRNGELAKARNLFNLLP---YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPA 168

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE----------------------- 191
           +   +  WNS+++GY   GE    +  + +M E  V                        
Sbjct: 169 KDLVS--WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFE 226

Query: 192 --PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL------NALVDMYAKCG 243
             P+  T   V   C   G  R G+    +A R    FD   +      NA++  Y +  
Sbjct: 227 KIPNPNTVSWVTMLC---GFARFGKIA--EARRL---FDQMPIRNVVAWNAMIAAYVQNC 278

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            + +A ++F  +  K+ IS+ +++ GY+  G L EA  +   M           IS  + 
Sbjct: 279 HVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQ 338

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIA--------------------------NSLIVVY 337
           N  +       +   +R  V W+  IA                          N+++  Y
Sbjct: 339 NKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASY 398

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFV 394
           ++ G++D A  +F+ M +K++VSWNS+I   +++    +AL  F  M  +G  PD  TF 
Sbjct: 399 AQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFA 458

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
             LS+CAHL +++VG++L   +V K G +  +     ++ +Y + G I  A  +  +   
Sbjct: 459 CGLSSCAHLAALQVGKQLHQ-LVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDH 517

Query: 455 FEASPVVWGALLYACYLHGN 474
           F+   V W +L+ A  L+GN
Sbjct: 518 FDV--VSWNSLIAAYALNGN 535



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 145/315 (46%), Gaps = 48/315 (15%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N+++  +AK G I  AR +FD +  ++++S+NSM+  Y+H+  + EA  +F  M      
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              + I+    N  L    A+          +W+    N+++  Y+K+ + D+A  LFD 
Sbjct: 110 SWTLMITCYTRNGEL----AKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDA 165

Query: 353 MPQKDVVSWNSIIHAHSKDHE---ALIYFEQM-ERDGVL--------------------- 387
           MP KD+VSWNS++  ++++ E    L +FE+M ERD V                      
Sbjct: 166 MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 225

Query: 388 -----PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
                P+ +++V++L   A  G +    RLF  M  +      V  +  M+  Y +   +
Sbjct: 226 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR-----NVVAWNAMIAAYVQNCHV 280

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG--ETAAQKLFELEPDNEHNFELLI 500
           DEA S+ +E    E + + W  +     ++G V MG  + A Q L ++   N      +I
Sbjct: 281 DEAISLFMEMP--EKNSISWTTV-----INGYVRMGKLDEARQLLNQMPYRNVAAQTAMI 333

Query: 501 KIYGNAGRLDDVERV 515
             Y    R+DD  ++
Sbjct: 334 SGYVQNKRMDDARQI 348



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 172/417 (41%), Gaps = 84/417 (20%)

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
           ++  KN    + ++  +A  G I +A Q+FD M  R   +  WNS+I+ Y      E+A 
Sbjct: 40  HMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVS--WNSMIAAYLHNDRVEEAR 97

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
            L+ +M       D +++  ++      G L +     +L      + ++    NA+V  
Sbjct: 98  QLFDKMPTR----DLYSWTLMITCYTRNGELAKARNLFNL----LPYKWNPVCCNAMVAG 149

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------IL 288
           YAK     +AR +FD +  KDL+S+NSMLTGY  +G +      F  M          ++
Sbjct: 150 YAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMV 209

Query: 289 NGF---------------DPDPVAISSILANASLLRIGAQVHGWVL------RRGVEWDL 327
           +GF                P+P  +S +       R G       L      R  V W  
Sbjct: 210 DGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW-- 267

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERD 384
              N++I  Y ++  +D+A  LF  MP+K+ +SW ++I+ +    K  EA     QM   
Sbjct: 268 ---NAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR 324

Query: 385 GV---------------------------LPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
            V                           + D + + ++++  +  G +     LF  MV
Sbjct: 325 NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV 384

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +K  +S     +  MV  Y + G +D A   I E+M+ E + V W +L+     +G+
Sbjct: 385 KKDIVS-----WNTMVASYAQVGQMDAAIK-IFEEMK-EKNIVSWNSLISGLTQNGS 434



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 32/198 (16%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFA  L +C  L A++ G +LH+L+  +    +  +S+ L+ +YA  G I  A  +F  +
Sbjct: 456 TFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI 515

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +    +  WNSLI+ YA  G   +A+ L+ +ME EGV PD+ TF  +L AC+ +GLI  
Sbjct: 516 DHFDVVS--WNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQ 573

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G K+      F      + +  L + YA          + D +G                
Sbjct: 574 GLKL------FKCMVQAYNIEPLAEHYA---------CMVDLLGRA-------------- 604

Query: 273 HGLLVEAFDIFRGMILNG 290
            G L EAF + RGM +N 
Sbjct: 605 -GRLEEAFQLVRGMKINA 621



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 13/139 (9%)

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           N  I    K G++D+A  +F HM  K+ V+ NS+I A +K+    +A   F+ M +  + 
Sbjct: 19  NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI- 77

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
              +++ S+++A  H   V+   +LF  M  +   S     +  M+  Y R G + +A +
Sbjct: 78  ---VSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYS-----WTLMITCYTRNGELAKARN 129

Query: 448 MIVEKMEFEASPVVWGALL 466
           +    + ++ +PV   A++
Sbjct: 130 LF-NLLPYKWNPVCCNAMV 147


>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
          Length = 470

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 242/441 (54%), Gaps = 18/441 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            ++LL  C    AV  G + H          +  + + L+ LY   G  + A +VFD+M 
Sbjct: 9   LSALLRRCAAAGAVRPGAQAHARAVVGGWLPDATLETDLVLLYCRCGERERARRVFDRMP 68

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
             +  A+  N L++  A    Y  A+ ++ ++    + PD+++ P +++AC  L    +G
Sbjct: 69  APSMHAY--NVLLA--ASPPRY--AMEIFSRLLAADLLPDRYSVPAMVRACTELPDAVLG 122

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  AVR G   +  V  A +DMYAK   +  A  VFD +  +D I +N M+TGY   
Sbjct: 123 AVIHGFAVRLGLMANVVVAAAFLDMYAKAVLLDDAVRVFDEMPERDAIVWNCMVTGYARA 182

Query: 274 GLLVEAFDIFRGM------ILNGFDPDPVAISSILANASLLRIGAQVHGWVLR-RGVEWD 326
           G   E FDIF         I+NG    P ++ +I A  S L  G ++HG ++R    + D
Sbjct: 183 GRAAETFDIFSRAQVEAVNIVNGLQAVP-SVLNICAKESELMKGREIHGMMVRCLAFDSD 241

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           + + N+LI +Y+K G+++ +  +F  M ++DVVSW+++IH+   H K  +AL  + +M  
Sbjct: 242 IAVGNALINMYAKCGRVNVSQAVFSGMQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLS 301

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            GV P+ +TF S+LS+C+H G V  G+++F  M + +G+ P  EHYACMV+L GRAG I+
Sbjct: 302 QGVKPNWITFTSVLSSCSHSGLVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIE 361

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA  +I  KM  E    VWGALL AC +H NV +GE AA +LFELE  +  N+  L  IY
Sbjct: 362 EAVGLI-RKMPMEPCASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIY 420

Query: 504 GNAGRLDDVERVERMLVDRGL 524
              G+ D V  +   + + G+
Sbjct: 421 DAVGQSDGVAGLRSRMRELGM 441


>gi|302801760|ref|XP_002982636.1| hypothetical protein SELMODRAFT_116842 [Selaginella moellendorffii]
 gi|300149735|gb|EFJ16389.1| hypothetical protein SELMODRAFT_116842 [Selaginella moellendorffii]
          Length = 567

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 239/454 (52%), Gaps = 15/454 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           Q LD ++    SS  +  +  + ++A LL  C + +A+E G ++H  I +    +N  + 
Sbjct: 28  QTLDLVVSSSSSSCSSWTSALSSSYAELLRRCGRARALEDGRRVHAHIVSTGQSQNPFLG 87

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+++Y   G + EA + FD +       + W  +IS YA+ G ++ AI L+  M+E  
Sbjct: 88  NLLVQMYGKCGSLGEARRAFDGIPESKRNVYSWGLMISAYAQSGHHKQAIDLFQTMQETK 147

Query: 190 ---VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              V+ D      VL +CA  G ++ G+ +H          +  V  AL+DMYAKCG + 
Sbjct: 148 TMVVKADCVILASVLGSCAASGDLQTGKAIHEKISSGCLDSNLVVETALLDMYAKCGKVA 207

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
           +AR  FDR+  +D+IS+N+ML  Y   G    A +++ GM   G  PD    S+I+ + S
Sbjct: 208 EARGTFDRMKERDVISWNAMLAAYAQTGHNTHAINLYHGMCCEGVFPDEFTFSTIVTSCS 267

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            LR+   VH  ++  G++ D  I   LI  Y+K  +++++  +F     +D V WN++I 
Sbjct: 268 SLRLLNLVHAVIVESGMQHDDGIYCGLIKSYAKLNQIEESERIF-----RDPVYWNALIA 322

Query: 367 AH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
           AH         L  F  M+ +G+ PD +TF S+L+ C      + G  +F  M+  YG+ 
Sbjct: 323 AHGLYGHTPRVLRLFSAMQLEGLAPDEVTFTSVLATCGRSRVARCGRGVFQAMISDYGMR 382

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG---NVCMGET 480
           P + HY C+++L+GR G +  A  +I E ME+E   V W +LL  C LHG   NV +G  
Sbjct: 383 PSLAHYRCLIHLFGRGGHLGAAKELI-ESMEYEPGDVEWTSLLGFCRLHGGLANVKLGRE 441

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
           AA +  E+ P+NE  + LL+ +     RL+D +R
Sbjct: 442 AAIRALEINPENETAYVLLLNLNAAVHRLEDAKR 475


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 253/469 (53%), Gaps = 23/469 (4%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLR 134
           ++ L   V  G+     T +S+L  C  L+ +  G +LH     N  L +N  + S L+ 
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVD 346

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPD 193
           +Y     +    +VFD M +R      WN++I+GY++    ++A+ L+  MEE  G+  +
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN 404

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             T   V+ AC   G     E +H   V+ G   D FV N L+DMY++ G I  A  +F 
Sbjct: 405 STTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464

Query: 254 RIGNKDLISYNSMLTGYI---HHG---LLVEAFD-----IFRGMILNGFDPDPVAISSIL 302
           ++ ++DL+++N+M+TGY+   HH    LL+         + +G       P+ + + +IL
Sbjct: 465 KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  S L  G ++H + ++  +  D+ + ++L+ +Y+K G L  +  +FD +PQK+V+
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WN II A   H    EA+     M   GV P+ +TF+S+ +AC+H G V  G R+F VM
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-VEKMEFEASPVVWGALLYACYLHGNV 475
              YG+ P  +HYAC+V+L GRAG I EAY ++ +   +F  +   W +LL A  +H N+
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG-AWSSLLGASRIHNNL 703

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +GE AAQ L +LEP+   ++ LL  IY +AG  D    V R + ++G+
Sbjct: 704 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 202/397 (50%), Gaps = 26/397 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS-----KLLRLYATFG 140
           GI      F +LL+    L+ +E G ++H     ++ +   G+ S      L+ LY   G
Sbjct: 92  GIKPDNYAFPALLKAVADLQDMELGKQIH----AHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
                ++VFD++S R   +  WNSLIS      ++E A+  +  M +E VEP  FT   V
Sbjct: 148 DFGAVYKVFDRISERNQVS--WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205

Query: 201 LKACAGLGL---IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           + AC+ L +   + +G++VH   +R G   + F++N LV MY K G +  ++ +    G 
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQV 314
           +DL+++N++L+    +  L+EA +  R M+L G +PD   ISS+L   S   +LR G ++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 315 HGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           H + L+ G ++ +  + ++L+ +Y    ++     +FD M  + +  WN++I  +S+   
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 371 DHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           D EAL+ F  ME   G+L +  T   ++ AC   G+    E +   +V K G+       
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV-KRGLDRDRFVQ 443

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             ++++Y R G ID A   I  KME +   V W  ++
Sbjct: 444 NTLMDMYSRLGKIDIAMR-IFGKME-DRDLVTWNTMI 478



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 166/333 (49%), Gaps = 14/333 (4%)

Query: 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS---NRTAFAFPWNSLISGYAELG 173
           +P+ LL  ++     LLR   T    D A  V    S   +++     W  L+       
Sbjct: 17  LPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSN 76

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VL 232
              +A+  Y  M   G++PD + FP +LKA A L  + +G+++H    +FG+G D   V 
Sbjct: 77  LLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVA 136

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N LV++Y KCGD      VFDRI  ++ +S+NS+++          A + FR M+    +
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196

Query: 293 PDPVAISSILANASL------LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           P    + S++   S       L +G QVH + LR+G E +  I N+L+ +Y K GKL  +
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASS 255

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             L      +D+V+WN+++ +  ++    EAL Y  +M  +GV PD  T  S+L AC+HL
Sbjct: 256 KVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
             ++ G+ L +  ++   +       + +V++Y
Sbjct: 316 EMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 256/453 (56%), Gaps = 9/453 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
             + +  G+   + TFAS L +  +  ++ H  ++H  I  + +  +  + S L+ +Y  
Sbjct: 335 FNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFK 394

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G ++ A ++F Q  N         ++ISGY   G   DAI  +  + +EG+ P+  T  
Sbjct: 395 GGDVEMARKIFQQ--NTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMA 452

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL ACA L  +++G+++H D ++        V +A+ DMYAKCG +  A   F R+   
Sbjct: 453 SVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSET 512

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVH 315
           D I +NSM++ +  +G    A D+FR M ++G   D V++SS L++A+    L  G ++H
Sbjct: 513 DSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMH 572

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
           G+V+R     D  +A++LI +YSK GKL  A  +F+ M  K+ VSWNSII A   H    
Sbjct: 573 GYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCAR 632

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           E L  F +M R GV PDH+TF+ ++SAC H G V  G   F  M  +YGI  R+EHYACM
Sbjct: 633 ECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACM 692

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V+LYGRAG + EA+  I + M F     VWG LL AC LHGNV + + A++ L EL+P N
Sbjct: 693 VDLYGRAGRLHEAFDAI-KSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKN 751

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              + LL  ++ +AG    V +V R++ ++G++
Sbjct: 752 SGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQ 784



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/421 (33%), Positives = 211/421 (50%), Gaps = 18/421 (4%)

Query: 63  AFPKTKLQ--ALDSIIQDLESS--VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP 118
           AF ++KL   A  SI  ++ S    Q+ +T Q E   SL   C     V+   ++H  I 
Sbjct: 15  AFSRSKLMHTAGTSICNNVMSKPETQDYLTTQLE---SLFRACSDASVVQQARQVHTQII 71

Query: 119 TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
              +     +SS++L LY   G I +   +F  +      A PWN +I G   LG ++ A
Sbjct: 72  VGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGL--ELCNALPWNWMIRGLYMLGWFDFA 129

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
           +  YF+M    V PD++TFP V+KAC GL  + +   VH  A   GF  D FV +AL+ +
Sbjct: 130 LLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKL 189

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV-- 296
           YA  G I  AR VFD +  +D I +N ML GY+  G    A   F GM  +    + V  
Sbjct: 190 YADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTY 249

Query: 297 -AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
             I SI A      +G QVHG V+  G E+D  +AN+L+ +YSK G L  A  LF+ MPQ
Sbjct: 250 TCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQ 309

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
            D V+WN +I  + ++    EA   F  M   GV PD +TF S L +    GS++  + +
Sbjct: 310 TDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEV 369

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            S +V ++ +   V   + ++++Y + G ++ A  +  +    + +  V  A++    LH
Sbjct: 370 HSYIV-RHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVA--VCTAMISGYVLH 426

Query: 473 G 473
           G
Sbjct: 427 G 427



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 217/469 (46%), Gaps = 54/469 (11%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           V + T+  +L  C        G ++H L+  +    +  +++ L+ +Y+  G + +A ++
Sbjct: 244 VNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKL 303

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F+ M         WN LI+GY + G  ++A  L+  M   GV+PD  TF   L +    G
Sbjct: 304 FNTMPQTDTVT--WNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 361

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +R  ++VH   VR    FD ++ +AL+D+Y K GD+  AR +F +    D+    +M++
Sbjct: 362 SLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMIS 421

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEW 325
           GY+ HGL ++A + FR +I  G  P+ + ++S+    A  + L++G ++H  +L++ +E 
Sbjct: 422 GYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLEN 481

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE------------ 373
            + + +++  +Y+K G+LD A   F  M + D + WNS+I + S++ +            
Sbjct: 482 IVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMG 541

Query: 374 ----------------------ALIYFEQME----RDGVLPDHLTFVSLLSACAHLGSVK 407
                                 AL Y ++M     R+    D     +L+   +  G + 
Sbjct: 542 MSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLA 601

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGAL 465
           +   +F++M  K  +S     +  ++  YG  G   E   +  E +     P  V +  +
Sbjct: 602 LARCVFNLMAGKNEVS-----WNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVI 656

Query: 466 LYACYLHGNVCMG---ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           + AC   G V  G        + + +    EH +  ++ +YG AGRL +
Sbjct: 657 ISACGHAGLVGEGIHYFHCMTREYGIGARMEH-YACMVDLYGRAGRLHE 704


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 237/440 (53%), Gaps = 9/440 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TFA  L+       + HG  +H         ++  + + L  +Y   G  D   ++F+
Sbjct: 258 SHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFE 317

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +M  +      W +LI+ Y + GE E A+  + +M +  V P+++TF  V+ ACA L + 
Sbjct: 318 KM--KMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIA 375

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           + GE++H   +R G      V N++V +Y+K G +  A  VF  I  KD+IS+++++  Y
Sbjct: 376 KWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVY 435

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDL 327
              G   EAFD    M   G  P+  A+SS+L+   + +LL  G QVH  VL  G++ + 
Sbjct: 436 SQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEA 495

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + ++LI +YSK G +++A  +F+ M   +++SW ++I+    H    EA+  FE++   
Sbjct: 496 MVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSV 555

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PD++TF+ +L+AC+H G V +G   F +M  +Y ISP  EHY C+++L  RAG + E
Sbjct: 556 GLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSE 615

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  MI   M      VVW  LL +C +HG+V  G   A++L  L+P++      L  IY 
Sbjct: 616 AEHMI-RSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYA 674

Query: 505 NAGRLDDVERVERMLVDRGL 524
             GR  +   + +++  +G+
Sbjct: 675 AKGRWKEAAHIRKLMKSKGV 694



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 244/534 (45%), Gaps = 56/534 (10%)

Query: 5   LYPPSSFHTSLVIIH-----------CGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSS 53
           L+PPSS H+   +              G+  +     ++ KQ+Q+++N  +  +    +S
Sbjct: 36  LHPPSSLHSMTAVFSRNLDSPLTYSSPGTATECRELIQQAKQEQLAQNAYSVHNMLELNS 95

Query: 54  PTPLLTNQKAFPKTK---------------------LQALDS---IIQDLESSVQNGITV 89
               L  Q    K++                     + A DS   +I      VQ G+  
Sbjct: 96  ELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQR 155

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
                +  L+ C     +  G  LH     + L  +  +SS L+ +Y   G I++  +VF
Sbjct: 156 DQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVF 215

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
            +M+ R   +  W ++I+G    G   +A+  + +M    V  D  TF   LKA A   L
Sbjct: 216 KKMTKRNVVS--WTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSL 273

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +  G+ +H   ++ GF    FV+N L  MY KCG       +F+++   D++S+ +++T 
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWD 326
           Y+  G    A + F+ M  +   P+     A+ S  AN ++ + G Q+HG VLR G+   
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDA 393

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
           L +ANS++ +YSK G L  A  +F  + +KD++SW++II  +S+     EA  Y   M R
Sbjct: 394 LSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRR 453

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           +G  P+     S+LS C  +  ++ G+++ +  V   GI      ++ ++++Y + G ++
Sbjct: 454 EGPKPNEFALSSVLSVCGSMALLEQGKQVHA-HVLCIGIDHEAMVHSALISMYSKCGSVE 512

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------LEPD 491
           EA S I   M+   + + W A++     HG        A  LFE      L+PD
Sbjct: 513 EA-SKIFNGMKIN-NIISWTAMINGYAEHGY----SQEAINLFEKISSVGLKPD 560


>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
          Length = 470

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 241/441 (54%), Gaps = 18/441 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            + LL  C    AV  G + H          +  + + L+ +Y   G    A +VFD M 
Sbjct: 9   LSGLLRRCAVAGAVRPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMR 68

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
             +  A+  N L++         DA+ ++ ++   G+ PD ++ P V++AC+ L    +G
Sbjct: 69  APSMHAY--NVLLAASPP----RDAMEVFSRLLASGLRPDGYSVPAVVRACSELPDAVLG 122

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  AVR G   +  V  AL+DMYAK G +  A  VFD +  +D + +N M+ GY   
Sbjct: 123 GVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARA 182

Query: 274 GLLVEAFDIF-RGMI-----LNGFDPDPVAISSILANASLLRIGAQVHGWVLR-RGVEWD 326
           G  VE F+IF R  +     +NG    P ++ +I A    L  G ++HG ++R    + D
Sbjct: 183 GRAVETFEIFSRAQVEAVNMVNGLQAVP-SVLNICAKEGELMKGREIHGRMVRCLAFDSD 241

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           + + N+LI +Y+K G+++ +  +F  M Q+DVVSW+++IH+   H K  +AL  + +M  
Sbjct: 242 IAVGNALINMYAKCGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLS 301

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           +GV P+ +TF S+LS+C+H G V  G ++F  M + +G+ P  EHYACMV+L GRAG I+
Sbjct: 302 EGVKPNWITFTSVLSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIE 361

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA  +I  KM  E    VWGALL AC +H NV +GE AA +LFELE  +  N+  L  IY
Sbjct: 362 EAVGLI-RKMPMEPCASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIY 420

Query: 504 GNAGRLDDVERVERMLVDRGL 524
              G+ D V  +   + + G+
Sbjct: 421 DAVGQSDGVAGLRSRMRELGM 441



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 144/299 (48%), Gaps = 22/299 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +G+     +  +++  C +L     G  +H       L  N  +++ LL +YA  G +
Sbjct: 95  LASGLRPDGYSVPAVVRACSELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFL 154

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--TFPRV 200
           D+A +VFD+M+ R A    WN +++GYA  G   +   ++ + + E V         P V
Sbjct: 155 DDAVRVFDEMTERDAVV--WNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSV 212

Query: 201 LKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           L  CA  G +  G ++H   VR   F  D  V NAL++MYAKCG +  ++ VF  +  +D
Sbjct: 213 LNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQRD 272

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----------LLR 309
           ++S+++M+  Y  HG   +A  ++  M+  G  P+ +  +S+L++ S          +  
Sbjct: 273 VVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKIFE 332

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSIIHA 367
              +VHG  +    E   C+ + L     + G +++A  L   MP +   S W +++ A
Sbjct: 333 SMTKVHG--VHPAAEHYACMVDLL----GRAGAIEEAVGLIRKMPMEPCASVWGALLSA 385


>gi|302822438|ref|XP_002992877.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
 gi|300139325|gb|EFJ06068.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
          Length = 630

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 247/443 (55%), Gaps = 16/443 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + GI +      SL+  C +L+A+E G +LH  +     R +  + + LL++Y   G +D
Sbjct: 47  ERGIVMDKFIVTSLVAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLD 106

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF+ M  +  F   W+S+IS YA  G  E A+ LY +M  EGVEP+  TF   +  
Sbjct: 107 DAKRVFEGMEIKDLFT--WSSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGG 164

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA +  +  G  +H   +      D  + ++L++MY KC ++V++R VF+ +  +++ SY
Sbjct: 165 CASVAGLADGRAIHQRILVSKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNVRSY 224

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSILANA---SLLRIGAQVHGWVL 319
            +M++ Y+  G   EA ++   M  +   +P+P   ++IL        L  G +VH  + 
Sbjct: 225 TAMISAYVQAGEQAEALELVSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRKVHRHLA 284

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
            RG + ++ I N+L+ +Y K G L +A  +FD M  ++V+SW S+I A   H    EAL 
Sbjct: 285 SRGFDTNVVIQNALVTMYGKCGSLVEAQKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 344

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF--SVMVEKYGISPRVEHYACMVN 434
            F++M+   V P  ++F S L+ACA LG++  G  +   S+M++ +G+ P VEHY CMV+
Sbjct: 345 LFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRSLMMD-HGVVPLVEHYLCMVD 400

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           + GR+G + +A  + VE M ++A  V W  LL  C  HG++  GE AA+K+FEL P    
Sbjct: 401 VLGRSGRLGDAEEL-VETMPYQADAVAWMTLLSGCKHHGDLDRGERAARKVFELAPAETL 459

Query: 495 NFELLIKIYGNAGRLDDVERVER 517
            +  L  +Y  A R DD  RV++
Sbjct: 460 PYVFLSNMYAAAKRFDDARRVQK 482



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 174/375 (46%), Gaps = 56/375 (14%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     TFA  +  C  +  +  G  +H+ I  + + ++  +   LL +Y     +
Sbjct: 147 ISEGVEPNVVTFACAVGGCASVAGLADGRAIHQRILVSKVLQDDVLQDSLLNMYLKCDEM 206

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVL 201
            E+ +VF+ M  R   ++   ++IS Y + GE  +A+ L  +M + E +EP+ +TF  +L
Sbjct: 207 VESRKVFEGMKARNVRSY--TAMISAYVQAGEQAEALELVSRMSKVEAIEPNPYTFATIL 264

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            A  GLG +  G KVH      GF  +  + NALV MY KCG +V+A+ VFD +  +++I
Sbjct: 265 GAVEGLGNLEKGRKVHRHLASRGFDTNVVIQNALVTMYGKCGSLVEAQKVFDSMTARNVI 324

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVH--G 316
           S+ SM+  Y  HG   EA ++F+ M     +P  V+ SS L   +LL     G ++H   
Sbjct: 325 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRS 381

Query: 317 WVLRRG----VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKD 371
            ++  G    VE  LC+ +    V  + G+L  A  L + MP Q D V+W          
Sbjct: 382 LMMDHGVVPLVEHYLCMVD----VLGRSGRLGDAEELVETMPYQADAVAW---------- 427

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYA 430
                                 ++LLS C H G +  GER    + E   ++P     Y 
Sbjct: 428 ----------------------MTLLSGCKHHGDLDRGERAARKVFE---LAPAETLPYV 462

Query: 431 CMVNLYGRAGLIDEA 445
            + N+Y  A   D+A
Sbjct: 463 FLSNMYAAAKRFDDA 477



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 197/417 (47%), Gaps = 46/417 (11%)

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  VFD ++++    +    +I+     G     + L+ +MEE G+  D+F    ++ A
Sbjct: 6   DAKAVFDFIASKNDRTYAI--MIAACVRKGRPLQVLELWGEMEERGIVMDKFIVTSLVAA 63

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  L  +  G ++H   +  GF  D  +  AL+ MY KCG +  A+ VF+ +  KDL ++
Sbjct: 64  CTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLDDAKRVFEGMEIKDLFTW 123

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           +S+++ Y H G    A  ++R MI  G +P+ V  +  +   A+ + L  G  +H  +L 
Sbjct: 124 SSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGGCASVAGLADGRAIHQRILV 183

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIY 377
             V  D  + +SL+ +Y K  ++ ++  +F+ M  ++V S+ ++I A+    +  EAL  
Sbjct: 184 SKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNVRSYTAMISAYVQAGEQAEALEL 243

Query: 378 FEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
             +M + + + P+  TF ++L A   LG+++ G ++   +  + G    V     +V +Y
Sbjct: 244 VSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRKVHRHLASR-GFDTNVVIQNALVTMY 302

Query: 437 GRAGLIDEAY---------------SMIV---------------EKMEFEASPVVWGALL 466
           G+ G + EA                SMI                ++M+ E S V + + L
Sbjct: 303 GKCGSLVEAQKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSAL 362

Query: 467 YACYLHGNVCMGETAAQKLFELE----PDNEHNFELLIKIYGNAGRLDDVER-VERM 518
            AC L G +  G     +   ++    P  EH +  ++ + G +GRL D E  VE M
Sbjct: 363 NACALLGALDEGREIHHRSLMMDHGVVPLVEH-YLCMVDVLGRSGRLGDAEELVETM 418



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 40/314 (12%)

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG  + A+ VFD I +K+  +Y  M+   +  G  ++  +++  M   G   D   ++S+
Sbjct: 1   CGKFLDAKAVFDFIASKNDRTYAIMIAACVRKGRPLQVLELWGEMEERGIVMDKFIVTSL 60

Query: 302 LANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           +A  + L+    G Q+H  ++  G   D+ +  +L+ +Y K G LD A  +F+ M  KD+
Sbjct: 61  VAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLDDAKRVFEGMEIKDL 120

Query: 359 VSWNSII--HAHSKDHE-ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS- 414
            +W+SII  +AH+   E A++ + +M  +GV P+ +TF   +  CA +  +  G  +   
Sbjct: 121 FTWSSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGGCASVAGLADGRAIHQR 180

Query: 415 VMVEKY----------------------------GISPR-VEHYACMVNLYGRAGLIDEA 445
           ++V K                             G+  R V  Y  M++ Y +AG   EA
Sbjct: 181 ILVSKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNVRSYTAMISAYVQAGEQAEA 240

Query: 446 YSMIVEKMEFEA---SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE-LLIK 501
             ++    + EA   +P  +  +L A    GN+  G    + L     D     +  L+ 
Sbjct: 241 LELVSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVIQNALVT 300

Query: 502 IYGNAGRLDDVERV 515
           +YG  G L + ++V
Sbjct: 301 MYGKCGSLVEAQKV 314


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 244/447 (54%), Gaps = 9/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
             ++    T A+ +++C ++  +  G  +           ++ + + L+ +YA+ G +  
Sbjct: 165 TAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVA 224

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH +F  +  +   A  WN++I+GY + G++++ + ++  M E     D+ T   V  AC
Sbjct: 225 AHVLFHTVQVKGVIA--WNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATAC 282

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             LG   +G+ +   A   G      +  ALVDMYAKCG++ KAR +FDR+ ++D+++++
Sbjct: 283 GRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWS 342

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           +M++GY       EA  IF  M     +P+ V + S+L+  ++   L  G  VH ++ R+
Sbjct: 343 AMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK 402

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYF 378
            +   + +  +L+  Y+K G +  A   F+ MP ++  +W ++I    ++ +  EAL  F
Sbjct: 403 DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELF 462

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M    + P  +TF+ +L AC+H   V+ G R F+ M + YGI PR+EHY CMV+L GR
Sbjct: 463 SSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGR 522

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGLIDEAY  I   M  E + VVW ALL AC +H NV +GE A +++  L+P +  N+ L
Sbjct: 523 AGLIDEAYQFI-RNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYIL 581

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L   Y + G+  +   V + + ++G+E
Sbjct: 582 LSNTYASVGQWKNAAMVRKEMKEKGVE 608


>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
 gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
          Length = 688

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 238/409 (58%), Gaps = 20/409 (4%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM---EEE 188
           +LR Y   G++ EA + FD M +R      W  ++ G  + G+   A+AL+ +M   EE 
Sbjct: 146 VLRTYLECGMLAEARRAFDGMPDRNGVT--WGIMMGGLVDRGQPRAALALFREMLLAEEA 203

Query: 189 GVEPDQFTFPR----VLKACAGLGLIRVGEKVHLDAVRFGFG---FDGFVLNALVDMYAK 241
           G + D    PR     L+A    G  R G+++H   V+ G      D ++  AL+DMY+K
Sbjct: 204 GGDGDAPP-PRSLVVALRAATASGSARAGQQLHCCVVKAGACGDVADRYLACALLDMYSK 262

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG I +AR VFD +    ++++NSML  Y+ HG   EA ++++ M  +    D    S++
Sbjct: 263 CGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMDQFTFSTM 322

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L   +   LL    Q H  +++RG+  D+    +L+ +Y K G+++ A  +F+ MP++++
Sbjct: 323 LGVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERMPRRNL 382

Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SWN++I     H    +A+  FE++  +GV+P+H+TF+++L+AC   G V  G+R+F +
Sbjct: 383 ISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNHVTFLAVLNACRFSGLVDKGKRIFQL 442

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M E   + PR  HYAC++ L+GR GL+DEAYSMI  +  F  +  +WGALL A  +H N+
Sbjct: 443 MTENLRMKPRAMHYACVIELFGREGLLDEAYSMI-RRAPFTPTANMWGALLTASRIHKNM 501

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + + AA++L  +EP+  +++ +L+ +Y ++GR DD  +V   L  +GL
Sbjct: 502 HLAKLAAEQLLAMEPEKINSYAVLLNLYVSSGRQDDACKVVETLKRKGL 550



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 55/337 (16%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
           ++ ++  LL +Y+  GLIDEA +VFD +   +  A  WNS+++ Y   G  E+A+ LY +
Sbjct: 249 DRYLACALLDMYSKCGLIDEARRVFDGLPRASVVA--WNSMLAAYVLHGRSEEALELYQE 306

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M    V  DQFTF  +L   + LGL+   ++ H   ++ G   D     ALVD+Y K G 
Sbjct: 307 MCRSRVAMDQFTFSTMLGVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGR 366

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +  AR VF+R+  ++LIS+N+++ GY +HG+  +A ++F  +I  G  P+ V   ++L N
Sbjct: 367 MEDARNVFERMPRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNHVTFLAVL-N 425

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIAN-----------SLIVVYSKDGKLDQACWLFDHM 353
           A       +  G V +    + L   N            +I ++ ++G LD+A  +    
Sbjct: 426 A------CRFSGLVDKGKRIFQLMTENLRMKPRAMHYACVIELFGREGLLDEAYSMIRRA 479

Query: 354 PQKDVVS-WNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           P     + W +++ A S+ H+ +                          HL  +   E+L
Sbjct: 480 PFTPTANMWGALLTA-SRIHKNM--------------------------HLAKL-AAEQL 511

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            ++  EK      +  YA ++NLY  +G  D+A  ++
Sbjct: 512 LAMEPEK------INSYAVLLNLYVSSGRQDDACKVV 542



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 151/280 (53%), Gaps = 24/280 (8%)

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           GF  D +  N ++  Y +CG + +AR  FD + +++ +++  M+ G +  G    A  +F
Sbjct: 135 GFDLDLYTHNHVLRTYLECGMLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRAALALF 194

Query: 284 RGMIL------NGFDPDP----VAISSILANASLLRIGAQVHGWVLRRGVEWDLC---IA 330
           R M+L      +G  P P    VA+ +  A+ S  R G Q+H  V++ G   D+    +A
Sbjct: 195 REMLLAEEAGGDGDAPPPRSLVVALRAATASGS-ARAGQQLHCCVVKAGACGDVADRYLA 253

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
            +L+ +YSK G +D+A  +FD +P+  VV+WNS++ A   H +  EAL  +++M R  V 
Sbjct: 254 CALLDMYSKCGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVA 313

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
            D  TF ++L   + LG ++  ++  + ++++ G+   +     +V+LY + G +++A +
Sbjct: 314 MDQFTFSTMLGVFSRLGLLEHAKQAHAGLIQR-GLPLDIVGNTALVDLYCKWGRMEDARN 372

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
            + E+M    + + W AL+     HG   MG+ A + +FE
Sbjct: 373 -VFERMP-RRNLISWNALIAGYGYHG---MGDKAIE-MFE 406


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 240/443 (54%), Gaps = 14/443 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF +++ TC     VE G +LH L     +     + + ++ +Y   G+++EA
Sbjct: 106 GLDPNDYTFTNIISTC----NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEA 161

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F  M+ +   +  W +LISGY   G  E A+  + ++   GVE D      +L  C+
Sbjct: 162 ARMFSVMNKKNLIS--WTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCS 219

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               + +G ++H   ++ G+  D  +  AL+D+YAKC +   ARTVF+ +  +   S+N+
Sbjct: 220 ECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNA 279

Query: 266 MLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +L G+I +    E   +F   + L G  PD V+ S +L   AN + L  G  +H + ++ 
Sbjct: 280 ILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKT 339

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G    + ++N+LI +Y+K G ++ A   F+ M   D +SWN+II A   H +  +AL+ +
Sbjct: 340 GFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLY 399

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++ME  G  PD +T + +L AC + G  + G  LF+ M  KYGI P +EHYACMV+L GR
Sbjct: 400 QEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGR 459

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + +A   I+ +  F  S ++W  L+  C L G++ +G+ A++ L +L PD   ++ L
Sbjct: 460 AGYLSQAMD-IINRSPFSESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVL 518

Query: 499 LIKIYGNAGRLDDVERVERMLVD 521
           +  IY   G +D+  +V   + D
Sbjct: 519 VSNIYAGEGMIDEASKVRTTMKD 541



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 200/404 (49%), Gaps = 19/404 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T   +L+ C  +  V  G ++H  +  +   +N  + + L+ +Y+  G  DEA +VF+ +
Sbjct: 12  TCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGV 71

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +       N +I  Y + G  + AI ++  +   G++P+ +TF  ++  C     +  
Sbjct: 72  GCKDLRCL--NCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCN----VEE 125

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H  AV++G      V NA++ MY K G + +A  +F  +  K+LIS+ ++++GY  
Sbjct: 126 GKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTR 185

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCI 329
           +G   +A D F  +   G + D   +++IL   S    L +G Q+HG V++ G   D+ I
Sbjct: 186 NGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINI 245

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI----IHAHSKDHEALIYFEQMERDG 385
             +LI +Y+K      A  +F+ +  +   S+N+I    I   S + + +++  Q+   G
Sbjct: 246 GTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAG 305

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD ++F  LLS  A+  S+  G  L +  + K G +  +     ++ +Y + G++++A
Sbjct: 306 IKPDSVSFSRLLSLSANRASLVKGRGLHAYSI-KTGFAGHISVSNALITMYAKCGIVEDA 364

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           Y         +   + W A++ A  LHG    GE A     E+E
Sbjct: 365 YQAFNSMSANDC--ISWNAIISAYSLHGQ---GEKALLLYQEME 403



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 141/258 (54%), Gaps = 5/258 (1%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M E G + ++ T   +L+AC+ +G + +GE++H   ++ GF  + FV  +L+ MY++ G+
Sbjct: 1   MCEFGEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGN 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
             +A  VF+ +G KDL   N M+  Y   G    A  +F  +I  G DP+    ++I++ 
Sbjct: 61  FDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIIST 120

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            ++   G Q+HG  ++ GV     + N++I +Y K+G +++A  +F  M +K+++SW ++
Sbjct: 121 CNVEE-GKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTAL 179

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  ++++    +A+  F ++   GV  D     ++L  C+   ++ +G ++  +++ K G
Sbjct: 180 ISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVI-KLG 238

Query: 422 ISPRVEHYACMVNLYGRA 439
               +     +++LY + 
Sbjct: 239 YPCDINIGTALIDLYAKC 256


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 233/410 (56%), Gaps = 11/410 (2%)

Query: 122 LRKNKGISSKLLRLYATF--GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
           L ++  ++SKL+   A    G +  AH++F    +   F   WN++I GY+       AI
Sbjct: 35  LTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFM--WNTIIRGYSISDSPITAI 92

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           ALY  M   G+ P+ +TF  VLKAC  L  +  G+++H   V+ G  F+  ++N L+ +Y
Sbjct: 93  ALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLY 152

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           A CG +  A  +FD +   D  S+++M++GY  +G  VEA  +FR M       D   ++
Sbjct: 153 AACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLA 212

Query: 300 SIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S++    +   L +G  VH ++ + GV+ D+ +  +L+ +YSK G LD A  +F  M ++
Sbjct: 213 SVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAER 272

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           DV +W+++I     H    +AL  F+ M+R   +P+ +TF S+LSAC+H G V+ G ++F
Sbjct: 273 DVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIF 332

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M  +Y I+P+++HY CMV+L+ RAG++  A+  I + M  E + V+W  LL AC  HG
Sbjct: 333 ETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFI-QTMPIEPNVVLWRTLLGACKTHG 391

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
              +GE  ++K+ +L+P +  N+ L+  +Y + GR   V +V  ++ D+ 
Sbjct: 392 YKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKA 441



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 179/370 (48%), Gaps = 34/370 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI+  + TF  +L+ C +L  +  G +LH  I    L     + + L++LYA  G +D A
Sbjct: 102 GISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYA 161

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD+M    + +  W++++SGYA+ G+  +A+ L+ +M+ E V  D FT   V+  C 
Sbjct: 162 CVMFDEMPEPDSAS--WSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCG 219

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG + +G+ VH    + G   D  +  ALV MY+KCG +  A  VF  +  +D+ ++++
Sbjct: 220 DLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWST 279

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           M+ GY  HG   +A  +F  M  +   P+ V  +S+L+  S        H  ++ +G + 
Sbjct: 280 MIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACS--------HSGLVEKGHQ- 330

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG 385
              I  ++   Y    ++     + D   +  +V      HAH        + + M    
Sbjct: 331 ---IFETMWTEYKITPQIKHYGCMVDLFCRAGMVG-----HAHK-------FIQTMP--- 372

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY---GRAGLI 442
           + P+ + + +LL AC   G   +GE +   +++    SP  E+Y  + N+Y   GR   +
Sbjct: 373 IEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSP--ENYVLVSNVYASLGRWSSV 430

Query: 443 DEAYSMIVEK 452
            +  S++ +K
Sbjct: 431 CQVRSLMKDK 440


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 247/447 (55%), Gaps = 42/447 (9%)

Query: 85   NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            +GI     T+  +L+     + +  G+++H  +    L  N  + + L+ +Y   G + E
Sbjct: 1120 HGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVE 1179

Query: 145  AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
            A +V DZM  R   +  WNSL++G A  G+++DA+ +  +ME  G++PD  T   +L A 
Sbjct: 1180 ACRVLDZMPCRDVVS--WNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAV 1237

Query: 205  AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
                         LD V F                         + +F ++ NK L+S+N
Sbjct: 1238 TN---------TCLDNVSF------------------------VKEMFMKLANKSLVSWN 1264

Query: 265  SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
             M+  Y+++ +  EA DIF  M  +  DPD ++I+S+L    + S L +G ++H +V+R+
Sbjct: 1265 VMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK 1324

Query: 322  GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYF 378
             ++ +L + N+LI +Y+K G L+ A  +FD M  +DVVSW S+I A+    K  +A+  F
Sbjct: 1325 RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLF 1384

Query: 379  EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             +M+  G+ PD + FVS+LSAC+H G +  G   F +M E+  I PR+EH+ CMV+L GR
Sbjct: 1385 SRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGR 1444

Query: 439  AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
            AG +DEAY  I ++M  E +  VWGALL AC ++ N+ +G  AA +LF+L P+    + L
Sbjct: 1445 AGQVDEAYGFI-KQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVL 1503

Query: 499  LIKIYGNAGRLDDVERVERMLVDRGLE 525
            L  IY  AGR +DV  V  ++  +G++
Sbjct: 1504 LSNIYAKAGRWEDVTTVRSIMKTKGIK 1530



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 201/417 (48%), Gaps = 44/417 (10%)

Query: 63   AFPKTKLQALDSIIQDLESS--VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
            A P + ++ L +++  ++     Q  + +       +L+    +K ++   KLH  I  +
Sbjct: 997  ASPPSAVKQLQTLVLSIQKPKFTQQXVVLTENLCGQILDKNPDIKYLK---KLHSKICID 1053

Query: 121  L-LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
              L  N  +  KL+R YA  G       +FD++  +    F  N +I  Y     Y DA+
Sbjct: 1054 HDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFF--NVMIRSYVNNHLYSDAL 1111

Query: 180  ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
             ++  M   G++PD +T+P VLKA +G   + VG ++H   VR G   + FV N L+ MY
Sbjct: 1112 LVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMY 1171

Query: 240  AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
             KCG +V+A  V D +  +D++S+NS++ G   +G   +A ++ + M L G  PD   ++
Sbjct: 1172 GKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMA 1231

Query: 300  SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
            S+L   +                   + C+ N   V + K+        +F  +  K +V
Sbjct: 1232 SLLPAVT-------------------NTCLDN---VSFVKE--------MFMKLANKSLV 1261

Query: 360  SWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            SWN +I  +   S   EA+  F QME   V PD ++  S+L AC  L ++ +G R+   +
Sbjct: 1262 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 1321

Query: 417  VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            V K  + P +     ++++Y + G ++ A   + ++M+F    V W +++ A  ++G
Sbjct: 1322 VRKR-LQPNLLLENALIDMYAKCGCLEYARE-VFDQMKFR-DVVSWTSMISAYGMNG 1375


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 221/374 (59%), Gaps = 8/374 (2%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
            F +N++I GY  +  +E+A+  Y +M + G EPD FT+P +LKAC  L  IR G+++H 
Sbjct: 97  TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              + G   D FV N+L++MY +CG++  +  VF+++ +K   S++SM++     G+  E
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216

Query: 279 AFDIFRGMI--LNGFDPDPVAISSIL--ANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334
              +FRGM    N    +   +S++L  AN   L +G  +HG++LR   E ++ +  SL+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL 391
            +Y K G LD+A  +F  M +++ ++++++I     H +   AL  F +M ++G+ PDH+
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            +VS+L+AC+H G VK G R+F+ M+++  + P  EHY C+V+L GRAGL++EA   I +
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI-Q 395

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            +  E + V+W   L  C +  N+ +G+ AAQ+L +L   N  ++ L+  +Y      DD
Sbjct: 396 SIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDD 455

Query: 512 VERVERMLVDRGLE 525
           V R    +  +GL+
Sbjct: 456 VARTRTEIAIKGLK 469



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 150/289 (51%), Gaps = 8/289 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q G      T+  LL+ C +LK++  G ++H  +    L  +  + + L+ +Y   G +
Sbjct: 124 MQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEM 183

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVL 201
           + +  VF+++ ++TA +  W+S++S  A +G + + + L+  M  E  ++ ++      L
Sbjct: 184 ELSSAVFEKLESKTAAS--WSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            ACA  G + +G  +H   +R     +  V  +LVDMY KCG + KA  +F ++  ++ +
Sbjct: 242 LACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL 301

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           +Y++M++G   HG    A  +F  MI  G +PD V   S+L   +++ L++ G +V   +
Sbjct: 302 TYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEM 361

Query: 319 LRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           L+ G VE        L+ +  + G L++A      +P +K+ V W + +
Sbjct: 362 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFL 410


>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
          Length = 527

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 221/374 (59%), Gaps = 8/374 (2%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
            F +N++I GY  +  +E+A+  Y +M + G EPD FT+P +LKAC  L  IR G+++H 
Sbjct: 97  TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              + G   D FV N+L++MY +CG++  +  VF+++ +K   S++SM++     G+  E
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216

Query: 279 AFDIFRGMI--LNGFDPDPVAISSIL--ANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334
              +FRGM    N    +   +S++L  AN   L +G  +HG++LR   E ++ +  SL+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL 391
            +Y K G LD+A  +F  M +++ ++++++I     H +   AL  F +M ++G+ PDH+
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
            +VS+L+AC+H G VK G R+F+ M+++  + P  EHY C+V+L GRAGL++EA   I +
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI-Q 395

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            +  E + V+W   L  C +  N+ +G+ AAQ+L +L   N  ++ L+  +Y      DD
Sbjct: 396 SIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDD 455

Query: 512 VERVERMLVDRGLE 525
           V R    +  +GL+
Sbjct: 456 VARTRTEIAIKGLK 469



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 150/289 (51%), Gaps = 8/289 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q G      T+  LL+ C +LK++  G ++H  +    L  +  + + L+ +Y   G +
Sbjct: 124 MQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEM 183

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVL 201
           + +  VF+++ ++TA +  W+S++S  A +G + + + L+  M  E  ++ ++      L
Sbjct: 184 ELSSAVFEKLESKTAAS--WSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            ACA  G + +G  +H   +R     +  V  +LVDMY KCG + KA  +F ++  ++ +
Sbjct: 242 LACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL 301

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           +Y++M++G   HG    A  +F  MI  G +PD V   S+L   +++ L++ G +V   +
Sbjct: 302 TYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEM 361

Query: 319 LRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           L+ G VE        L+ +  + G L++A      +P +K+ V W + +
Sbjct: 362 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFL 410


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 251/452 (55%), Gaps = 38/452 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           + +  L  C  +K +  G++LH L   +   +N  +++  + +Y     +DEA +VFD+M
Sbjct: 385 SLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEM 444

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             + A +  WN++I+ + +  E    + +   M   G+EPD++TF  VLKACAG  L   
Sbjct: 445 GRKDAVS--WNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSLNH- 501

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI----------------- 255
           G ++H   V+ G   + ++ ++LVDMY+KCG I +A  + ++I                 
Sbjct: 502 GMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETI 561

Query: 256 ----GNKD------LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
               G +D      ++S+N++++GY+      +A   F  M+  G  PD    S++L   
Sbjct: 562 EEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTC 621

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           AN + + +G Q+H  V+++ +++D+ I ++L+ +YSK G L  +  +F+  P +D V+WN
Sbjct: 622 ANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWN 681

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I     H    EA+  FE M    ++P+H TFVSLL ACAH+G V+ G   F +M ++
Sbjct: 682 AMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKE 741

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH-GNVCMG 478
           YG+ PR+EHY+ MV++ G++G +++A  +I E M FEA  V+W  LL AC ++  NV   
Sbjct: 742 YGLDPRLEHYSNMVDILGKSGEVEKALELIQE-MPFEADDVIWRTLLSACKINRNNVEAA 800

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           E AA  L  L+P +   + LL  IY +AG  D
Sbjct: 801 EVAANALLRLDPQDSSTYILLSNIYADAGMWD 832



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 20/373 (5%)

Query: 84  QNGITVQTETFASLLETC-----YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           ++G+    ++F+ +L+ C     Y+L    HGI L     T+++       S LL +YA 
Sbjct: 174 RSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVS-----GSALLDMYAK 228

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
              +DE+  VF  M  +   +  W+++I+G  +    +  + ++ +M++ GV   Q  + 
Sbjct: 229 CKRLDESFTVFYAMPQKNWIS--WSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYA 286

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VLK+CA L  +R+G ++H  A++  F  DG V  A +DMYAKC ++  A+ +FD   N 
Sbjct: 287 SVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENL 346

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           +L SYN+M+TGY        A  +FR +  +    D +++S  L   A    L  G Q+H
Sbjct: 347 NLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLH 406

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE-- 373
           G   +     ++C+AN+ I +Y K   LD+AC +FD M +KD VSWN+II AH ++ E  
Sbjct: 407 GLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERS 466

Query: 374 -ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
             L     M R G+ PD  TF S+L ACA   S+  G  + + +V K G++      + +
Sbjct: 467 KTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIV-KLGMASNPYIGSSL 524

Query: 433 VNLYGRAGLIDEA 445
           V++Y + G+IDEA
Sbjct: 525 VDMYSKCGMIDEA 537



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 241/499 (48%), Gaps = 71/499 (14%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LD  ++  +   + G+ V    +AS+L++C  L  +  G +LH     +   K+  + + 
Sbjct: 263 LDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTA 322

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
            L +YA    + +A ++FD   N    ++  N++I+GY++      A+ L+ ++ +  + 
Sbjct: 323 TLDMYAKCNNMQDAQRLFDMSENLNLQSY--NAMITGYSQKDNGFRALLLFRKLSKSSLG 380

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D+ +    L+ACA +  +  G ++H  A +  F  +  V NA +DMY KC  + +A  V
Sbjct: 381 FDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRV 440

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--LLR 309
           FD +G KD +S+N+++  +  +    +  +I   M+ +G +PD     S+L   +   L 
Sbjct: 441 FDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSLN 500

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF------------------- 350
            G ++H  +++ G+  +  I +SL+ +YSK G +D+A  +                    
Sbjct: 501 HGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPET 560

Query: 351 --------DHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
                   D   Q+ +VSWN+II  +    +  +A  +F +M   G+ PD  T+ ++L  
Sbjct: 561 IEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDT 620

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEA 457
           CA+L S+ +G+++ + +++K     + + Y C  +V++Y + G + ++      ++ FE 
Sbjct: 621 CANLASIGLGKQIHAHVIKK---ELQYDVYICSTLVDMYSKCGNLHDS------RLMFEK 671

Query: 458 SP----VVWGALLYACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAG 507
           +P    V W A++     HG   MGE A  KLFE      + P N   F  L++   + G
Sbjct: 672 APIRDFVTWNAMICGYAHHG---MGEEAI-KLFESMVLMNIMP-NHATFVSLLRACAHMG 726

Query: 508 RLDDVERVERMLVDRGLEF 526
                      LV+RGL++
Sbjct: 727 -----------LVERGLDY 734



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 166/319 (52%), Gaps = 31/319 (9%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S +++G+     TF S+L+ C    ++ HG+++H  I    +  N  I S L+ +Y+ 
Sbjct: 472 LVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSK 530

Query: 139 FGLIDEAHQVFDQM-----SNRTAFAFP--------------------WNSLISGYAELG 173
            G+IDEA ++ +++      + T    P                    WN++ISGY    
Sbjct: 531 CGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRK 590

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
           + EDA   + +M E G+ PD+FT+  VL  CA L  I +G+++H   ++    +D ++ +
Sbjct: 591 QSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICS 650

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293
            LVDMY+KCG++  +R +F++   +D +++N+M+ GY HHG+  EA  +F  M+L    P
Sbjct: 651 TLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMP 710

Query: 294 DPVAISSIL---ANASLLRIGAQ-VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
           +     S+L   A+  L+  G    H      G++  L   ++++ +  K G++++A  L
Sbjct: 711 NHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALEL 770

Query: 350 FDHMP-QKDVVSWNSIIHA 367
              MP + D V W +++ A
Sbjct: 771 IQEMPFEADDVIWRTLLSA 789



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 198/411 (48%), Gaps = 38/411 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F+ + + C + +A E G + H  +  +  R    +S+ LL+LY   G +  A ++FD M
Sbjct: 51  NFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGM 110

Query: 153 -----------------SN---RTAFAF---------PWNSLISGYAELGEYEDAIALYF 183
                            SN   R +  F          WNS++SG+ + GE  +++ ++ 
Sbjct: 111 PLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFI 170

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M   GVE D  +F  +LK C+ L   ++G ++H  A+R G+  D    +AL+DMYAKC 
Sbjct: 171 EMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCK 230

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
            + ++ TVF  +  K+ IS+++++ G + +  L     +F+ M   G        +S+L 
Sbjct: 231 RLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLK 290

Query: 304 NASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
           + +    LR+G Q+H   L+     D  +  + + +Y+K   +  A  LFD     ++ S
Sbjct: 291 SCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQS 350

Query: 361 WNSIIHAHS-KDH--EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           +N++I  +S KD+   AL+ F ++ +  +  D ++    L ACA +  +  G +L   + 
Sbjct: 351 YNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHG-LA 409

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
            K   S  +      +++YG+   +DEA  +  E    +A  V W A++ A
Sbjct: 410 TKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDA--VSWNAIIAA 458


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 246/449 (54%), Gaps = 17/449 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GIT  +  F++L+ +      ++ G ++H  +       N  I + +  +Y   G +D A
Sbjct: 187 GITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGA 246

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
               ++M+ + A A     L+ GY +     DA+ L+ +M  EGVE D F F  +LKACA
Sbjct: 247 EVATNKMTRKNAVAC--TGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACA 304

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG +  G+++H   ++ G   +  V   LVD Y KC     AR  F+ I   +  S+++
Sbjct: 305 ALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSA 364

Query: 266 MLTGYIHHGLLVEAFDIFR-----GMILNGFDPDPV--AISSILANASLLRIGAQVHGWV 318
           ++ GY   G    A ++F+     G++LN F    +  A S++    S L  GAQ+H   
Sbjct: 365 LIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAV----SDLICGAQIHADA 420

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEAL 375
           +++G+   L   +++I +YSK G++D A   F  + + D V+W +II AH+   K  EAL
Sbjct: 421 IKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEAL 480

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F++M+  GV P+ +TF+ LL+AC+H G VK G+++   M ++YG++P ++HY CM+++
Sbjct: 481 RLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDV 540

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           Y RAGL+ EA   ++  + FE   + W +LL  C+ H N+ +G  AA  +F L+P +   
Sbjct: 541 YSRAGLLQEALE-VIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSAT 599

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + ++  +Y  AG+ D+  +  +M+ +R L
Sbjct: 600 YVIMFNLYALAGKWDEAAQFRKMMAERNL 628



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 221/454 (48%), Gaps = 30/454 (6%)

Query: 42  RITTFSSYP-----KSSPTPLLTNQKAFPKTKLQALDSI-----IQDLESSVQN----GI 87
           R   F+  P     KSS + L T+Q    + +   L S+     ++++   ++N    GI
Sbjct: 29  RHANFAQIPSWVSLKSSHSSLRTHQNQQGQVENLHLISLAKQGNLREVHEFIRNMDKVGI 88

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
           ++   ++  L + C  L A+  G   H  +   +   NK I + +L++Y        A +
Sbjct: 89  SINPRSYEYLFKMCGTLGALSDGKLFHNRLQ-RMANSNKFIDNCILKMYCDCKSFTSAER 147

Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
            FD++ ++   +  W+++IS Y E G  ++A+ L+ +M + G+ P+   F  ++ +    
Sbjct: 148 FFDKIVDQDLSS--WSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDP 205

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
            ++ +G+++H   +R GF  +  +   + +MY KCG +  A    +++  K+ ++   ++
Sbjct: 206 SMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLM 265

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRGVE 324
            GY       +A  +F  MI  G + D    S IL A A+L  L  G Q+H + ++ G+E
Sbjct: 266 VGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLE 325

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM 381
            ++ +   L+  Y K  + + A   F+ + + +  SW+++I  + +  +   AL  F+ +
Sbjct: 326 SEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAI 385

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
              GVL +   + ++  AC+ +  +  G ++ +  ++K G+   +   + M+++Y + G 
Sbjct: 386 RSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKK-GLVAYLSGESAMISMYSKCGQ 444

Query: 442 IDEAYS--MIVEKMEFEASPVVWGALLYACYLHG 473
           +D A+   + ++K +     V W A++ A   HG
Sbjct: 445 VDYAHQAFLTIDKPD----TVAWTAIICAHAYHG 474


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 240/450 (53%), Gaps = 20/450 (4%)

Query: 86  GITVQTETFASLLETCYQ-----LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           G  + + T  S++  C Q     +  V HG      + T L+ +   + + LL +Y+   
Sbjct: 80  GQELDSTTLLSVMPACVQSHYSFIGGVVHGYS----VRTGLISETS-LGNALLDMYSNCS 134

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
                +++F  M  +   +  W ++I+ Y   G ++    L+ +M  EG+ PD F     
Sbjct: 135 DWRSTNKIFRNMEQKNVVS--WTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSA 192

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L A AG   ++ G+ VH  A+R G      V NAL++MY KCG + +AR +FD +  KD 
Sbjct: 193 LDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDT 252

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           IS+N+++ GY    L  EAF +F  M+L    P+ V ++ IL   A+ S L  G ++H +
Sbjct: 253 ISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAY 311

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            +RRG   D  +AN+L+ +Y K G L  A  LFD +  K+++SW  +I     H +  +A
Sbjct: 312 AVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDA 371

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           +  FEQM+  G+ PD  +F ++L AC+H G    G R F+ M  ++ I P+++HYACMV+
Sbjct: 372 IALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVD 431

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L    G + EAY  I E M  E    +W +LL  C +H NV + E  A+ +FELEP+N  
Sbjct: 432 LLCHTGNLKEAYEFI-ETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTG 490

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + LL  IY  A R + V +++  +  RGL
Sbjct: 491 YYVLLANIYAEAERWEAVRKLKNKVGGRGL 520



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 184/355 (51%), Gaps = 18/355 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+  YA    I++A  VFD+M  R   +  WNS+I G A  G Y+ A+ L+ +M  
Sbjct: 21  VCNALISFYAKSNRIEDALMVFDEMPQRDIIS--WNSIIGGCASNGLYDKAVELFVRMWL 78

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EG E D  T   V+ AC       +G  VH  +VR G   +  + NAL+DMY+ C D   
Sbjct: 79  EGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRS 138

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
              +F  +  K+++S+ +M+T Y   G   +   +F+ M L G  PD  AI+S L   A 
Sbjct: 139 TNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAG 198

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L+ G  VHG+ +R G+E  L +AN+L+ +Y K G +++A ++FDH+ +KD +SWN++
Sbjct: 199 NESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTL 258

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  +S+    +EA   F +M    + P+ +T   +L A A L S++ G  + +  V +  
Sbjct: 259 IGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGY 317

Query: 422 ISPRVEHYACMVNLYGRAG---LIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +       A +V++Y + G   L    + M+  K     + + W  ++    +HG
Sbjct: 318 LEDNFVANA-LVDMYVKCGALLLARRLFDMLTNK-----NLISWTIMIAGYGMHG 366



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 9/240 (3%)

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH   V++GFG    V NAL+  YAK   I  A  VFD +  +D+IS+NS++ G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL  +A ++F  M L G + D   + S++     +    IG  VHG+ +R G+  +  +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQMERDG 385
            N+L+ +YS          +F +M QK+VVSW ++I ++++    D  A + F++M  +G
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGL-FQEMGLEG 181

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD     S L A A   S+K G+ +    + + GI   +     ++ +Y + G ++EA
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAI-RNGIEEVLPVANALMEMYVKCGYMEEA 240


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 253/489 (51%), Gaps = 10/489 (2%)

Query: 43  ITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCY 102
           I  F   P +S T  L N            ++ +    S  +  I   + TF+ +L+ C 
Sbjct: 57  ILVFHKTPTNSNT-FLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACA 115

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           +L     G+ +H L+       +  + + ++  Y+  G + +A +VFD M  +   +  W
Sbjct: 116 RLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVS--W 173

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
             +I G  E G++ +A+ L+  + E G+ PD F   RVL+ACA LG +  G  +      
Sbjct: 174 TGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRE 233

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            G   + FV  +LVDMY KCG + +AR VFD +  KD++ +++M+ GY  +GL  EA ++
Sbjct: 234 CGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIEL 293

Query: 283 FRGMILNGFDPDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M      PD  A+   L++ ASL  L +G    G +       +  +  SLI  Y+K
Sbjct: 294 FFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAK 353

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G +++A  ++  M +KD V +N++I     + +   A   F QM + G+ P+  TFV L
Sbjct: 354 CGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGL 413

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L  C H G V  G   F+ M   + ++P +EHY CMV+L  RAG +DEA+++I + M  +
Sbjct: 414 LCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLI-KGMPMK 472

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
           A+ +VWG+LL  C LH    + E   ++L ELEP N  ++ LL  IY  + R D+ E++ 
Sbjct: 473 ANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIR 532

Query: 517 RMLVDRGLE 525
             + ++G++
Sbjct: 533 STVNEKGMQ 541



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 133/423 (31%), Positives = 218/423 (51%), Gaps = 26/423 (6%)

Query: 104 LKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ---VFDQMSNRTAFA 159
           LK ++H    H RL+  NL   N  +S   + L +T    + A     VF +    +   
Sbjct: 14  LKCLKHAKLAHCRLLRLNLHHDNDLLS---IILRSTINFSNNAQYPILVFHKTPTNSN-T 69

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F +N++I G      + +A+ LY  M +  + PD FTF  VLKACA L L  +G  +H  
Sbjct: 70  FLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSL 129

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
             + GF  D FV   +V  Y+KCG +  A  VFD +  K+++S+  M+ G I  G   EA
Sbjct: 130 VFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREA 189

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG-WVLR----RGVEWDLCIANSLI 334
            D+FRG++ +G  PD   I  +L   +  R+G    G W+ R     G+  ++ +A SL+
Sbjct: 190 VDLFRGLLESGLRPDGFVIVRVLRACA--RLGDLESGRWIDRCMRECGLSRNVFVATSLV 247

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHL 391
            +Y+K G +++A ++FD M +KD+V W+++I  ++ +    EA+  F +M +  V PD  
Sbjct: 248 DMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCY 307

Query: 392 TFVSLLSACAHLGSVKVGERLFSVM-VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
             V  LS+CA LG++++G     +M  E++  +P +     +++ Y + G ++EA    V
Sbjct: 308 AMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEEALG--V 363

Query: 451 EKMEFEASPVVWGALLYACYLHGNV--CMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
            KM  E   VV+ A++    ++G V    G       F + P NEH F  L+    +AG 
Sbjct: 364 YKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPP-NEHTFVGLLCGCTHAGL 422

Query: 509 LDD 511
           +DD
Sbjct: 423 VDD 425


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 238/422 (56%), Gaps = 44/422 (10%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++ + M++  A A  WN++ISGY   G YE+A  L  +M   G++ D++T+  V+ A 
Sbjct: 227 ARELLEGMTDHIAVA--WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAA 284

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDG-FVL---NALVDMYAKCGDIVKARTVFDRIGNKDL 260
           +  GL  +G +VH   +R      G FVL   NAL+ +Y +CG +V+AR VFD++  KDL
Sbjct: 285 SNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDL 344

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFR---------------GMILNGF-------------- 291
           +S+N++L+G ++   + EA  IFR               G+  NGF              
Sbjct: 345 VSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLE 404

Query: 292 --DPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
             +P   A +  +A+ S+L     G Q+H  +++ G +  L + N+LI +YS+ G ++ A
Sbjct: 405 GLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAA 464

Query: 347 CWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +F  MP  D VSWN++I A   H    +A+  +E+M ++ +LPD +TF+++LSAC+H 
Sbjct: 465 DTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHA 524

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G VK G   F  M   YGI+P  +HY+ +++L  RAG+  EA + + E M FE    +W 
Sbjct: 525 GLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKN-VTESMPFEPGAPIWE 583

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           ALL  C++HGN+ +G  AA +L EL P  +  +  L  +Y   G+ D+V RV +++ +RG
Sbjct: 584 ALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERG 643

Query: 524 LE 525
           ++
Sbjct: 644 VK 645



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 194/433 (44%), Gaps = 93/433 (21%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ +L  Y+  G I  AHQ+F+           +N++I+ ++   +   A+ L+ QM+  
Sbjct: 65  ATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRL 124

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGE----KVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           G  PD FTF  VL A   L LI   E    ++H +  ++G      VLNAL+  Y  C  
Sbjct: 125 GFVPDPFTFSSVLGA---LSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCAS 181

Query: 245 ---------IVKARTVFDR------------------IGNKDL---------------IS 262
                    +  AR +FD                   + N DL               ++
Sbjct: 182 SPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVA 241

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+M++GY+H G   EAFD+ R M   G   D    +S++   +NA L  IG QVH +VL
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 320 RRGVE----WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-------- 367
           R  V+    + L + N+LI +Y++ GKL +A  +FD MP KD+VSWN+I+          
Sbjct: 302 RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIE 361

Query: 368 --------------------------HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
                                     +    E L  F QM+ +G+ P    +   +++C+
Sbjct: 362 EANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCS 421

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
            LGS+  G++L S +++  G    +     ++ +Y R GL+ EA   +   M +  S V 
Sbjct: 422 VLGSLDNGQQLHSQIIQ-LGHDSSLSVGNALITMYSRCGLV-EAADTVFLTMPYVDS-VS 478

Query: 462 WGALLYACYLHGN 474
           W A++ A   HG+
Sbjct: 479 WNAMIAALAQHGH 491



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 145/307 (47%), Gaps = 39/307 (12%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           I+EA+ +F +M  R+     W  +ISG A+ G  E+ + L+ QM+ EG+EP  + +   +
Sbjct: 360 IEEANSIFREMPVRSLLT--WTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAI 417

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            +C+ LG +  G+++H   ++ G      V NAL+ MY++CG +  A TVF  +   D +
Sbjct: 418 ASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSV 477

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           S+N+M+     HG  V+A  ++  M+     PD +   +IL+  S        H  +++ 
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACS--------HAGLVKE 529

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQM 381
           G  +     +++ V Y    + D    L D + +  + S        +K+    + FE  
Sbjct: 530 GRHY----FDTMRVCYGITPEEDHYSRLIDLLCRAGMFS-------EAKNVTESMPFE-- 576

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVG----ERLFSVMVEKYGISPRVEHYACMVNLYG 437
                 P    + +LL+ C   G++++G    +RL  +M ++ G       Y  + N+Y 
Sbjct: 577 ------PGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGT------YISLSNMYA 624

Query: 438 RAGLIDE 444
             G  DE
Sbjct: 625 ALGQWDE 631



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 131/352 (37%), Gaps = 91/352 (25%)

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--------- 255
           A L        VH   +  GF     ++N L+D Y K  +I  AR +FD+I         
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 256 ---------GN---------------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
                    GN               +D +SYN+M+T + H      A  +F  M   GF
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 292 DPDPVAISSILANASLL----RIGAQVHGWVLRRGVEWDLCIANSLIVVY---------- 337
            PDP   SS+L   SL+        Q+H  V + G      + N+L+  Y          
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186

Query: 338 --------------SKDGKLDQACW------------------LFDHMPQKDVVSWNSII 365
                         +  G+ D+  W                  L + M     V+WN++I
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMI 246

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
             +       EA     +M   G+  D  T+ S++SA ++ G   +G ++ + ++    +
Sbjct: 247 SGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTV-V 305

Query: 423 SPRVEHYACMVN-----LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
            P   H+   VN     LY R G + EA   + +KM  +   V W A+L  C
Sbjct: 306 QPS-GHFVLSVNNALITLYTRCGKLVEA-RRVFDKMPVK-DLVSWNAILSGC 354



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 94/254 (37%), Gaps = 64/254 (25%)

Query: 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ------ 355
           LA  S       VH  +L  G +    I N LI  Y K   +  A +LFD +P+      
Sbjct: 6   LAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAA 65

Query: 356 ---------------------------KDVVSWNSIIHA--HSKD-HEALIYFEQMERDG 385
                                      +D VS+N++I A  HS D H AL  F QM+R G
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG 125

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
            +PD  TF S+L A              S++ ++       +   C V  +G   +    
Sbjct: 126 FVPDPFTFSSVLGA-------------LSLIADE---ETHCQQLHCEVFKWGALSVPSVL 169

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
            +++   +   +SP+V            N C+   AA+KLF+  P    +      I   
Sbjct: 170 NALMSCYVSCASSPLV------------NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAG 217

Query: 506 AGRLDDVERVERML 519
             R DD+     +L
Sbjct: 218 YVRNDDLVAARELL 231


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 239/439 (54%), Gaps = 42/439 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C     +  G K+H       L     + + L+ +Y   G + EA  V D+M
Sbjct: 142 TFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R   +  WNSL+ GYA+   ++DA+ +  +ME   +  D  T   +L A +      V
Sbjct: 202 SRRDVVS--WNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
                                    MY K         +F ++G K L+S+N M+  Y+ 
Sbjct: 260 -------------------------MYVK--------DMFFKMGKKSLVSWNVMIGVYMK 286

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           + + VEA +++  M  +GF+PD V+I+S+L    + S L +G ++HG++ R+ +  +L +
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGV 386
            N+LI +Y+K G L++A  +F++M  +DVVSW ++I A+    +  +A+  F +++  G+
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PD + FV+ L+AC+H G ++ G   F +M + Y I+PR+EH ACMV+L GRAG + EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + M  E +  VWGALL AC +H +  +G  AA KLF+L P+    + LL  IY  A
Sbjct: 467 RFI-QDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++V  +  ++  +GL+
Sbjct: 526 GRWEEVTNIRNIMKSKGLK 544



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 176/367 (47%), Gaps = 38/367 (10%)

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           +H  I    LR N  +  KL+R YA+   +  A +VFD++  R       N +I  Y   
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIII--NVMIRSYVNN 118

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G Y + + ++  M    V PD +TFP VLKAC+  G I +G K+H  A + G     FV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N LV MY KCG + +AR V D +  +D++S+NS++ GY  +    +A ++ R M      
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
            D   ++S+L   S                   +    N   V+Y KD        +F  
Sbjct: 239 HDAGTMASLLPAVS-------------------NTTTEN---VMYVKD--------MFFK 268

Query: 353 MPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M +K +VSWN +I  + K+    EA+  + +ME DG  PD ++  S+L AC    ++ +G
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           +++    +E+  + P +     ++++Y + G +++A   + E M+     V W A++ A 
Sbjct: 329 KKIHG-YIERKKLIPNLLLENALIDMYAKCGCLEKARD-VFENMK-SRDVVSWTAMISAY 385

Query: 470 YLHGNVC 476
              G  C
Sbjct: 386 GFSGRGC 392



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      +  S+L  C    A+  G K+H  I    L  N  + + L+ +YA  G +++
Sbjct: 303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF+ M +R   +  W ++IS Y   G   DA+AL+ ++++ G+ PD   F   L AC
Sbjct: 363 ARDVFENMKSRDVVS--WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAAC 420

Query: 205 AGLGLIRVGE---KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           +  GL+  G    K+  D  +     +   L  +VD+  + G + +A
Sbjct: 421 SHAGLLEEGRSCFKLMTDHYKITPRLEH--LACMVDLLGRAGKVKEA 465


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 244/444 (54%), Gaps = 14/444 (3%)

Query: 84  QNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ IT+ TE T+++++  C  LK +    +LH  +  +       + + L+  Y   G +
Sbjct: 250 RSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQL 309

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D+A  VF  MS  +     W ++I G  + G+   A AL+ +M E+GV P+  T+  +L 
Sbjct: 310 DKALDVFLLMSG-SQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT 368

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
                       ++H   ++  +     V  AL+  Y+K     +A ++F  I  KD++S
Sbjct: 369 VSEA----SFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVS 424

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWV 318
           +++MLT Y   G    A + F  M ++G  P+   ISS +    + A+ + +G Q H   
Sbjct: 425 WSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAIS 484

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
           ++      LC++++L+ +Y++ G ++ A  +F+    +D++SWNS++     H    +AL
Sbjct: 485 IKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKAL 544

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F QME +G+  D LTF+S++  CAH G V+ G++ F +MV  YGI+P ++HYACMV+L
Sbjct: 545 DVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDL 604

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           Y RAG +DE  S+I E M F A P +W ALL AC +H NV +G+ AA+KL  LEP +   
Sbjct: 605 YSRAGKLDETMSLI-EGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSAT 663

Query: 496 FELLIKIYGNAGRLDDVERVERML 519
           + LL  IY  AG+  + + V +++
Sbjct: 664 YVLLSNIYSAAGKWKEKDEVRKLM 687



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 222/452 (49%), Gaps = 38/452 (8%)

Query: 47  SSYPKSSP--TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           + +P  +P   P  T  + F     QALD     L++  + G  V       +++ C  +
Sbjct: 15  TKFPTRTPWTMPFSTTWQGFVH---QALDHF---LDAHRRQGRCVGGGALLGIIKICGSV 68

Query: 105 KAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
                G +LH L +       +  + + L+ +Y  +  + +  +VF+ M  R      W 
Sbjct: 69  PDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVT--WT 126

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           SL++GY + G   D ++L+F+M  EGV P+ FTF  VL   A  G++ +G+ VH  +++F
Sbjct: 127 SLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKF 186

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G     FV N+L++MYAKCG + +AR VF R+  +D++S+N+++ G + +G  +EA  +F
Sbjct: 187 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLF 246

Query: 284 ---RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
              R  I    +     + ++ AN   L +  Q+H  VL+ G      +  +L+  Y+K 
Sbjct: 247 HDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKA 306

Query: 341 GKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSL 396
           G+LD+A  +F  M   ++VVSW ++I    ++ +   A   F +M  DGV P+ LT+ ++
Sbjct: 307 GQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTI 366

Query: 397 LSACAHLGSVKVGERLF------SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           L+         V E  F       V+   Y  +P V   A MV+ Y +    +EA S+  
Sbjct: 367 LT---------VSEASFPPQIHAQVIKTNYECTPTVG-TALMVS-YSKLCSTEEALSIF- 414

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
            KM  +   V W A+L  CY     C G T A
Sbjct: 415 -KMIDQKDVVSWSAML-TCYAQAGDCNGATNA 444


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 243/448 (54%), Gaps = 10/448 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q+G         SL      L  + +G + H       L  +  + + L+ +Y   G I
Sbjct: 359 LQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSI 418

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           + + +VF+ M  R   +  W ++++ +A+   + +A+ +  ++++EG+  D      +L+
Sbjct: 419 ECSAKVFESMGIRDHIS--WTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILE 476

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            C GL  I + ++VH  A+R G   D  + N L+D+Y +CG+   +  +F R+  KD++S
Sbjct: 477 TCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVS 535

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + SM+    ++G L  A  +F  M      PD VA+ SIL   A  S L  G QVHG+++
Sbjct: 536 WTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLI 595

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           RR    +  + +SL+ +YS  G ++ A  +F+    KDVV W ++I+A   H    +A+ 
Sbjct: 596 RRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAID 655

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F++M + G+ PDH++F++LL AC+H   V+ G+    +MV KY + P  EHYAC+V++ 
Sbjct: 656 LFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDIL 715

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR+G  +EAY  I + M  +    VW ALL AC +H N  +   AA KL ELEPDN  N+
Sbjct: 716 GRSGQTEEAYEFI-KTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNY 774

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            L+  ++   G+ ++ +     + +RGL
Sbjct: 775 ILVSNVFAEMGKWNNAKETRTRMAERGL 802



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 227/440 (51%), Gaps = 25/440 (5%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           + +S   G      T AS+L+ C        G ++H L     L K+  +++ L+ +YA 
Sbjct: 152 MRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAK 211

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            GL+D A +VF+ +         WNS++SG  + G   +A+AL+  M+  G   + +T  
Sbjct: 212 CGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSV 271

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL+ CA LGL+ +G ++H   ++ G   +    NAL+ MYAK G +  A  VF +I  K
Sbjct: 272 AVLQVCAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEK 330

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVH 315
           D IS+NSML+ Y+ +    EA D F  M+ +GF PD    V++SS L + S L  G + H
Sbjct: 331 DYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFH 390

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDH- 372
            + +++ +  DL + N+L+ +Y K G ++ +  +F+ M  +D +SW +I+   A S  H 
Sbjct: 391 AYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHS 450

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL    +++++G++ D +   S+L  C  L S+ + +++    +    +   +E+   +
Sbjct: 451 EALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENR--L 508

Query: 433 VNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF---- 486
           +++YG  G  D + ++   VEK +     V W +++  C  +G +      A  LF    
Sbjct: 509 IDIYGECGEFDHSLNLFQRVEKKDI----VSWTSMINCCTNNGRL----NGAVFLFTEMQ 560

Query: 487 --ELEPDNEHNFELLIKIYG 504
              ++PD+     +L+ I G
Sbjct: 561 KANIQPDSVALVSILVAIAG 580



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 199/372 (53%), Gaps = 19/372 (5%)

Query: 111 IKLHRLIPTNLLRKNKG-ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           +  H +   +L   + G +++KL+ +Y   G +D+A ++F+ M  RT F+  WN+L+  Y
Sbjct: 79  VHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFS--WNALVGAY 136

Query: 170 AELGEYEDAIALYFQMEEE---GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
              G   +A+ +Y  M      G  PD  T   VLKAC   G  R G +VH  AV+ G  
Sbjct: 137 LSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLD 196

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFR 284
               V NAL+ MYAKCG +  A  VF+ +    +D+ S+NS+++G + +G  +EA  +FR
Sbjct: 197 KSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFR 256

Query: 285 GMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           GM   GF  +    VA+  + A   LL +G ++H  +L+ G E ++   N+L+V+Y+K G
Sbjct: 257 GMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI-QCNALLVMYAKYG 315

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLS 398
           ++D A  +F  + +KD +SWNS++  + ++    EA+ +F +M + G  PDH   VSL S
Sbjct: 316 RVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSS 375

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           A  HL  +  G R F     K  +   ++    ++++Y + G I E  + + E M     
Sbjct: 376 ALGHLSRLNNG-REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSI-ECSAKVFESMGIR-D 432

Query: 459 PVVWGALLYACY 470
            + W  +L AC+
Sbjct: 433 HISWTTIL-ACF 443



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 205/399 (51%), Gaps = 21/399 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS---SKLLRLYATFGLI 142
           G  + + T  ++L+ C +L  +  G +LH      LL+    ++   + LL +YA +G +
Sbjct: 262 GFPMNSYTSVAVLQVCAELGLLSLGRELH----AALLKCGSELNIQCNALLVMYAKYGRV 317

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A +VF Q++ +   +  WNS++S Y +   Y +AI  + +M + G +PD      +  
Sbjct: 318 DSALRVFGQIAEKDYIS--WNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSS 375

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A   L  +  G + H  A++     D  V N L+DMY KCG I  +  VF+ +G +D IS
Sbjct: 376 ALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHIS 435

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVL 319
           + ++L  +       EA ++   +   G   D + I SIL     L+   +  QVH + +
Sbjct: 436 WTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAI 495

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           R G+  DL + N LI +Y + G+ D +  LF  + +KD+VSW S+I+  + +   + A+ 
Sbjct: 496 RNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVF 554

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHYACMVNL 435
            F +M++  + PD +  VS+L A A L S+  G+++   ++ + + I   V   + +V++
Sbjct: 555 LFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV--VSSLVDM 612

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           Y   G ++  Y++ V +       V+W A++ A  +HG+
Sbjct: 613 YSGCGSMN--YAIRVFERAKCKDVVLWTAMINATGMHGH 649


>gi|218192520|gb|EEC74947.1| hypothetical protein OsI_10926 [Oryza sativa Indica Group]
          Length = 469

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 159/437 (36%), Positives = 241/437 (55%), Gaps = 42/437 (9%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L  C  L  V  G  +H L+ T   L  +   ++ LL +Y+  GL+  A +VFD+M++R 
Sbjct: 54  LRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASR- 112

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                WN+L++ YA  G  E A+AL  +M   G+ PD  T+  V+               
Sbjct: 113 GDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVS-------------- 158

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
                  GF   G  L A        GD+V A  + D     D++++ S ++G + +   
Sbjct: 159 -------GFALAGDDLMA--------GDLVGA--MKDDGFQPDVVTWTSRVSGSVLNFQY 201

Query: 277 VEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             A  +FR M++ G    P    IS+IL   AN + ++ G +VHG+ +  GVE +L +++
Sbjct: 202 GRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSS 261

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +L+ +Y+K G + +A  LFD MPQ+  V+WNS+I   +      EA+  F++M RDG  P
Sbjct: 262 ALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKP 321

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           DHLTF ++L+AC++ G V+VG+ L+  M  +Y + PR+EHYACMV+L GRAG +DEAY  
Sbjct: 322 DHLTFTAVLTACSYGGMVEVGKILYRAMQVEYSVEPRLEHYACMVHLLGRAGRLDEAYGF 381

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I   M  E    VWGALL AC  HGN+ + E AA +L  +EPDN  +  LL     NAG+
Sbjct: 382 I-RAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASCLLLSSALANAGK 440

Query: 509 LDDVERVERMLVDRGLE 525
            DDV +++R++  R L+
Sbjct: 441 QDDVFKIKRLVKRRRLK 457



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 166/403 (41%), Gaps = 87/403 (21%)

Query: 162 WNSLISGYAELGEYEDAIALYF-----QMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEK 215
           W   ++  +  G + D + L+F     Q    G V+P     P  L+ACA L  +  G  
Sbjct: 9   WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 68

Query: 216 VH-LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHH 273
           +H L   R     D     AL+DMY+KCG +  AR VFD + ++ D + +N++L  Y  H
Sbjct: 69  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 128

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333
           GL   A  +   M   G  PD V  + +++  +L                  D  +A  L
Sbjct: 129 GLPEHALALAVKMRGIGLCPDLVTWNIVVSGFAL----------------AGDDLMAGDL 172

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG--VLP 388
           +     DG             Q DVV+W S +     + +   A   F  M   G  VLP
Sbjct: 173 VGAMKDDGF------------QPDVVTWTSRVSGSVLNFQYGRARALFRAMMVAGGRVLP 220

Query: 389 DHLTFVSLLSACAHLGSVKVGERL--FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
              T  ++L A A++  VK G+ +  +SV+    G+   +   + +V++Y + GL+ EA 
Sbjct: 221 SSATISTILPAFANVADVKHGKEVHGYSVVA---GVEQELTVSSALVDMYAKCGLVLEAR 277

Query: 447 SMIVEKMEFEASPVVWG-----------------------------------ALLYACYL 471
            +  +KM  + S V W                                    A+L AC  
Sbjct: 278 RLF-DKMP-QRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSY 335

Query: 472 HGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
            G V +G+    A Q  + +EP  EH +  ++ + G AGRLD+
Sbjct: 336 GGMVEVGKILYRAMQVEYSVEPRLEH-YACMVHLLGRAGRLDE 377



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            + T +++L     +  V+HG ++H       + +   +SS L+ +YA  GL+ EA ++F
Sbjct: 221 SSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLF 280

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+M  R+     WNS+I G A  G  ++A+ L+ +M  +G +PD  TF  VL AC+  G+
Sbjct: 281 DKMPQRSTVT--WNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGM 338

Query: 210 IRVGE 214
           + VG+
Sbjct: 339 VEVGK 343


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 231/398 (58%), Gaps = 21/398 (5%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G IDEA Q+FD+      F   W +++SGY +    E+A  L+ +M E     ++ 
Sbjct: 255 YAQNGEIDEARQLFDESPVHDVFT--WTAMVSGYIQNRMVEEARELFDRMPER----NEV 308

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFD 253
           ++  +L      G ++ GE+V +    F      +    N ++  YA+CG I +A+ +FD
Sbjct: 309 SWNAMLA-----GYVQ-GERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFD 362

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
           ++  +D +S+ +M+ GY   G   EA  +F  M   G   +  + SS L   A+   L +
Sbjct: 363 KMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALEL 422

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q+HG +++ G E    + N+L+++Y K G +++A  LF  M  KD+VSWN++I  +S+
Sbjct: 423 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 482

Query: 371 ---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                EAL +FE M+R+G+ PD  T V++LSAC+H G V  G + F  M + YG+ P  +
Sbjct: 483 HGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQ 542

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HYACMV+L GRAGL++EA++++ + M FE    +WG LL A  +HGN  + ETAA K+F 
Sbjct: 543 HYACMVDLLGRAGLLEEAHNLM-KNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 601

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +EP+N   + LL  +Y ++GR  DV ++   + D+G++
Sbjct: 602 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 639



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 11/280 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++ ++L    Q + VE   +L  ++P     +N    + ++  YA  G I EA  +FD+M
Sbjct: 309 SWNAMLAGYVQGERVEMAKELFDVMPC----RNVSTWNTMITGYAQCGKISEAKNLFDKM 364

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W ++I+GY++ G   +A+ L+  ME EG   ++ +F   L  CA +  + +
Sbjct: 365 PKRDPVS--WAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALEL 422

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   V+ G+    FV NAL+ MY KCG I +A  +F  +  KD++S+N+M+ GY  
Sbjct: 423 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 482

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQ-VHGWVLRRGVEWDLC 328
           HG   EA   F  M   G  PD    VA+ S  ++  L+  G Q  H      GV  +  
Sbjct: 483 HGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQ 542

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
               ++ +  + G L++A  L  +MP + D   W +++ A
Sbjct: 543 HYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGA 582



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 189/399 (47%), Gaps = 58/399 (14%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +++ Y     + +A ++F++M  R   +  WN+++SGYA+ G  +DA  ++ +M E+   
Sbjct: 127 MIKGYVRNRNLGKARELFERMPERDVCS--WNTILSGYAQNGCVDDARRVFDRMPEK--- 181

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL---NALVDMYAKCGDIVKA 248
            +  ++  +L A           K+    V FG   + + L   N L+  + K   IV+A
Sbjct: 182 -NDVSWNALLSAYV------QNSKLEEACVLFG-SRENWALVSWNCLLGGFVKKKKIVEA 233

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF---------------RGMILNGFDP 293
           R  FD +  +D++S+N+++TGY  +G + EA  +F                G I N    
Sbjct: 234 RQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVE 293

Query: 294 DPVAISSILANASLLRIGAQVHGWVLRRGVEW-----------DLCIANSLIVVYSKDGK 342
           +   +   +   + +   A + G+V    VE            ++   N++I  Y++ GK
Sbjct: 294 EARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGK 353

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           + +A  LFD MP++D VSW ++I  +S+    +EAL  F  MER+G   +  +F S LS 
Sbjct: 354 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALST 413

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           CA + ++++G++L   +V K G          ++ +Y + G I+EA  +  E    +   
Sbjct: 414 CADVVALELGKQLHGRLV-KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI-- 470

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFE------LEPDN 492
           V W  ++     HG    GE A  + FE      L+PD+
Sbjct: 471 VSWNTMIAGYSRHG---FGEEAL-RFFESMKREGLKPDD 505



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 160/339 (47%), Gaps = 39/339 (11%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y   G   EA +VF +M   ++ ++  N++ISGY   GE+E A  L+ +M E     D  
Sbjct: 69  YMRTGRCSEALRVFKRMPRWSSVSY--NAMISGYLRNGEFELARMLFDEMPER----DLV 122

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGF----GFDGFVLNALVDMYAKCGDIVKARTV 251
           ++  ++K     G +R     +L   R  F      D    N ++  YA+ G +  AR V
Sbjct: 123 SWNVMIK-----GYVR---NRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRV 174

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIG 311
           FDR+  K+ +S+N++L+ Y+ +  L EA  +F              +   +    ++   
Sbjct: 175 FDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEAR 234

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
                  +R  V W     N++I  Y+++G++D+A  LFD  P  DV +W +++  + ++
Sbjct: 235 QFFDSMKVRDVVSW-----NTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQN 289

Query: 372 H---EALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
               EA   F++M ER+ V     ++ ++L+       V++ + LF VM  +      V 
Sbjct: 290 RMVEEARELFDRMPERNEV-----SWNAMLAGYVQGERVEMAKELFDVMPCR-----NVS 339

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +  M+  Y + G I EA ++  +KM  +  PV W A++
Sbjct: 340 TWNTMITGYAQCGKISEAKNLF-DKMP-KRDPVSWAAMI 376



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 32/286 (11%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N  +  Y + G   +A  VF R+     +SYN+M++GY+ +G    A  +F  M      
Sbjct: 63  NVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLV 122

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              V I   + N +L +        +  R  E D+C  N+++  Y+++G +D A  +FD 
Sbjct: 123 SWNVMIKGYVRNRNLGKARE-----LFERMPERDVCSWNTILSGYAQNGCVDDARRVFDR 177

Query: 353 MPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MP+K+ VSWN+++ A+   SK  EA + F   E   +    +++  LL        +   
Sbjct: 178 MPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSWNCLLGGFVKKKKIVEA 233

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWGAL 465
            + F  M  +  +S     +  ++  Y + G IDEA  +      F+ SPV     W A+
Sbjct: 234 RQFFDSMKVRDVVS-----WNTIITGYAQNGEIDEARQL------FDESPVHDVFTWTAM 282

Query: 466 LYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLD 510
           + + Y+   +      A++LF+  P+ NE ++  ++  Y    R++
Sbjct: 283 V-SGYIQNRMV---EEARELFDRMPERNEVSWNAMLAGYVQGERVE 324



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G  +   +F+S L TC  + A+E G +LH  +          + + LL +Y   G I+
Sbjct: 397 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 456

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA+ +F +M+ +   +  WN++I+GY+  G  E+A+  +  M+ EG++PD  T   VL A
Sbjct: 457 EANDLFKEMAGKDIVS--WNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSA 514

Query: 204 CAGLGLIRVGEK-VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           C+  GL+  G +  H     +G   +      +VD+  + G + +A  +   +
Sbjct: 515 CSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567


>gi|218200446|gb|EEC82873.1| hypothetical protein OsI_27751 [Oryza sativa Indica Group]
          Length = 678

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 136/402 (33%), Positives = 231/402 (57%), Gaps = 10/402 (2%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE- 188
           +++LR+    G++ EA QVFD M +R+     W +++ G  + G    A+AL+ ++ EE 
Sbjct: 152 NRVLRMQLACGMLAEARQVFDGMPSRSEAT--WGTMMGGLIDAGRPRGALALFRELWEEV 209

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G +         ++A   LG    G+++H    + G   D ++  AL+DMY KCG + +A
Sbjct: 210 GGDAAPRVVVVAVRAVTALGSACAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGQLDEA 269

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANA 305
           R VFD +  K ++++NSML  Y  HG   EA D++  M   G D D    S++L   +  
Sbjct: 270 RRVFDGMPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRL 329

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
            LL    Q H  +++RG+  D+    +L+ +Y K G+++ A  +F+ MP ++++SWN++I
Sbjct: 330 GLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGQMEDARNVFERMPIRNLISWNALI 389

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                H    +A+  FE++  +G+ P+H+TF+++L+AC   G V+ G+R+F +M +    
Sbjct: 390 AGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEGKRIFQLMTQNQRT 449

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
            PR  HYAC++ L+G+ G +DEAYSMI  K  F  +  +WGALL A  +H N+ +   AA
Sbjct: 450 KPRAMHYACIIELFGQQGRLDEAYSMI-RKAPFIPTANMWGALLTASRIHKNLQLARLAA 508

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           ++L  +EP   +N+ +L+ +Y N+GR  +  +V   L  RGL
Sbjct: 509 EQLLAMEPQKTNNYVVLLNLYINSGRQTEASKVVDTLKRRGL 550



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 114/193 (59%), Gaps = 2/193 (1%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G +LH  +    + +++ +S  L+ +Y   G +DEA +VFD M  ++  A  WNS+++ Y
Sbjct: 234 GQQLHCCVAKTGMYEDQYLSCALIDMYNKCGQLDEARRVFDGMPQKSVVA--WNSMLASY 291

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
           +  G  E+A+ LY  M E GV+ DQFTF  +L+  + LGL+   ++ H   ++ G   D 
Sbjct: 292 SLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQRGLPLDI 351

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
               ALVD+Y K G +  AR VF+R+  ++LIS+N+++ GY +HG+  +A ++F  +I  
Sbjct: 352 VGNTALVDLYCKWGQMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAE 411

Query: 290 GFDPDPVAISSIL 302
           G  P+ V   ++L
Sbjct: 412 GIAPNHVTFLAVL 424



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 12/141 (8%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-----RLIPTNLLRKNKGISSKLLRL 135
           S  + G+ +   TF+++L    +L  +EH  + H     R +P +++      ++ L+ L
Sbjct: 306 SMCEGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQRGLPLDIVG-----NTALVDL 360

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y  +G +++A  VF++M  R   +  WN+LI+GY   G  + AI ++ ++  EG+ P+  
Sbjct: 361 YCKWGQMEDARNVFERMPIRNLIS--WNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHV 418

Query: 196 TFPRVLKACAGLGLIRVGEKV 216
           TF  VL AC   G +  G+++
Sbjct: 419 TFLAVLNACRFSGFVEEGKRI 439


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 243/453 (53%), Gaps = 21/453 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++NG +    TF  +L+ C  +   + G  +H  I  +    +   ++ LL +Y +   +
Sbjct: 96  IENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADM 155

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
               +VFD +      A  W  LI+GY +  +  +A+ ++  M    VEP++ T    L 
Sbjct: 156 KSGLKVFDNIPKWNVVA--WTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALI 213

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGF---------VLNALVDMYAKCGDIVKARTVFD 253
           ACA    I  G  VH   +R   G+D F         +  A+++MYAKCG +  AR +F+
Sbjct: 214 ACAHSRDIDTGRWVH-QRIRKA-GYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFN 271

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRI 310
           ++  ++++S+NSM+  Y  +    EA D+F  M  +G  PD    +++ S+ A+   L +
Sbjct: 272 KMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALAL 331

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G  VH ++L+ G+  D+ +A +L+ +Y+K G+L  A  +F  + +KDVV W S+I+    
Sbjct: 332 GQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAM 391

Query: 368 HSKDHEALIYFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           H   +EAL  F+ M+ D  L PDH+T++ +L AC+H+G V+  ++ F +M E YG+ P  
Sbjct: 392 HGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGR 451

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           EHY CMV+L  RAG   EA   ++E M  + +  +WGALL  C +H NVC+      +L 
Sbjct: 452 EHYGCMVDLLSRAGHFREA-ERLMETMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLK 510

Query: 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
           ELEP       LL  IY  AGR ++V    +++
Sbjct: 511 ELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVM 543



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 206/401 (51%), Gaps = 23/401 (5%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY--ATFGLIDEAH 146
           +   T  SLL  C  ++ ++   KLH LI T    K+    SKL+     + FG I+ A 
Sbjct: 2   IHQNTILSLLAKCKSMRELK---KLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYAD 58

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            V  Q+ N + +   WNS+I G+        ++ LY QM E G  PD FTFP VLKAC  
Sbjct: 59  LVLRQIHNPSVYI--WNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCV 116

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           +     G+ +H   V+ GF  D +    L+ MY  C D+     VFD I   +++++  +
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCL 176

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           + GY+ +    EA  +F  M     +P+ + + + L   A++  +  G  VH  + + G 
Sbjct: 177 IAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGY 236

Query: 324 EWDLCIANSLIVV-------YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHE 373
           +  +  +NS I++       Y+K G+L  A  LF+ MPQ+++VSWNS+I+A++   +  E
Sbjct: 237 DPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQE 296

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F  M   GV PD  TF+S+LS CAH  ++ +G+ + + ++ K GI+  +     ++
Sbjct: 297 ALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLL-KTGIATDISLATALL 355

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           ++Y + G +  A  +     + +   V+W +++    +HG+
Sbjct: 356 DMYAKTGELGNAQKIFSSLQKKDV--VMWTSMINGLAMHGH 394


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 239/439 (54%), Gaps = 11/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SL+  C +L A+  G  +H  +  +    N  + + LL LY   G I +A  VFD++
Sbjct: 240 TLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDEL 299

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S  T     W ++I GYA+ G   +A+ L+     + + P+  T   VL ACA  G + +
Sbjct: 300 S--TIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNM 357

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH   ++ G   D    NALVDMYAKC  I  AR VF+ + +KD+I++NS+++GY  
Sbjct: 358 GRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQ 416

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV-EWDLC 328
           +G   EA ++F  M  +   PD + + S+L   A+    R+G+ +HG+ ++ G+    + 
Sbjct: 417 NGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVY 476

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDG 385
           +  +L+  Y+K G  + A  +FD M +K+ ++W+++I  +    +   +L  F  M ++ 
Sbjct: 477 VGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEK 536

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+ + F ++LSAC+H G +  G R F+ M + Y   P ++HYACMV+L  RAG ++EA
Sbjct: 537 LEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEA 596

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I EK+  +    + GA L+ C LH    +GE A +++ EL PD    + L+  +Y +
Sbjct: 597 LDFI-EKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYAS 655

Query: 506 AGRLDDVERVERMLVDRGL 524
            GR     +V  ++  RGL
Sbjct: 656 EGRWSQANQVMELMKQRGL 674



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 229/432 (53%), Gaps = 21/432 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F+ +L+ C +L+  + G KLH  I   +   +  + + L+ +YA    ++++ +VFD++ 
Sbjct: 141 FSIVLKACSELRETDEGRKLHCQI-VKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEIL 199

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           +R      W S+I GY +    ++ + L+ +M E  VE +Q+T   ++ AC  LG +  G
Sbjct: 200 DRNVVC--WTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQG 257

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           + VH   ++ GF  + F++  L+D+Y KCGDI  A +VFD +   DL+S+ +M+ GY   
Sbjct: 258 KWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQR 317

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   EA  +F         P+ V  SS+L   A    L +G  VH   ++ G E D    
Sbjct: 318 GYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSE-DATFE 376

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           N+L+ +Y+K   +  A ++F+ +  KDV++WNSII  ++++   +EAL  F+QM  D V 
Sbjct: 377 NALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVY 436

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PD +T VS+LSACA +G+ +VG  L    ++   +S  V     ++N Y + G  + A  
Sbjct: 437 PDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESA-R 495

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVC-----MGETAAQKLFELEPDNEHNFELLIKI 502
           +I ++M  E + + W A++    + G+        G+   +K   LEP NE  F  ++  
Sbjct: 496 VIFDEMG-EKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEK---LEP-NEVIFTTILSA 550

Query: 503 YGNAGRLDDVER 514
             ++G L +  R
Sbjct: 551 CSHSGMLGEGWR 562



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 200/396 (50%), Gaps = 17/396 (4%)

Query: 78  DLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA 137
           +++ ++ +  ++ +    SLL  C   K V    K+H L+  + L ++    +KL+ LY 
Sbjct: 26  EIDRTIASIQSISSNPCFSLLGIC---KTVSSLRKIHALLVVHGLSEDLLCETKLVSLYG 82

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFT 196
           +FG ++ A  +FD++ N   ++  W  +I  Y     Y + +  Y  ++ +   E D   
Sbjct: 83  SFGHVECARLMFDRIRNPDLYS--WKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVV 140

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           F  VLKAC+ L     G K+H   V+ G   D FVL  LVDMYAKC ++  +R VFD I 
Sbjct: 141 FSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEIL 199

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQ 313
           +++++ + SM+ GY+ +  L E   +F  M     + +   + S++   +    L  G  
Sbjct: 200 DRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKW 259

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           VHG+V++ G + +  +   L+ +Y K G +  A  +FD +   D+VSW ++I  +++   
Sbjct: 260 VHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGY 319

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             EAL  F       +LP+ +T  S+LSACA  GS+ +G  +  + ++        E+  
Sbjct: 320 PREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFEN-- 377

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +V++Y +  +I +A    V +  F+   + W +++
Sbjct: 378 ALVDMYAKCHMIGDA--RYVFETVFDKDVIAWNSII 411


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 240/445 (53%), Gaps = 33/445 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T+  +L TC     ++ G ++H L        +  +S  L+ +Y+ +G +++A
Sbjct: 340 GIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +V + +  +   +  W S+I+GY +    +DA+A + +M++ G+ PD       +  CA
Sbjct: 400 RRVLEMLKEKDVVS--WTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCA 457

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G+  +R G ++H      G+  D  + NALV++YA+CG I +A + F+ I +KD I++N 
Sbjct: 458 GIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           +++G+   GL  EA  +F  M  +G   +     S L   AN + ++ G Q+H  V++ G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
             ++  + N+LI +Y K G  + A   F  M +++ VSWN+II +   H +  EAL +F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFD 637

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM+++G+                          F  M +KYGI PR +HYAC+++++GRA
Sbjct: 638 QMKKEGL------------------------SYFKSMSDKYGIRPRPDHYACVIDIFGRA 673

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +D A    VE+M   A  +VW  LL AC +H N+ +GE AA+ L ELEP +  ++ LL
Sbjct: 674 GQLDRA-KKFVEEMPIAADAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLL 732

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
              Y   G+  + ++V +M+ DRG+
Sbjct: 733 SNAYAVTGKWANRDQVRKMMRDRGV 757



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/470 (29%), Positives = 249/470 (52%), Gaps = 40/470 (8%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           I ++++SS   G++    T +SLL  C  L  ++ G +LH  +    +  +  +   LL 
Sbjct: 231 IFEEMQSS---GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLD 287

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           LY   G ++ A  +F+ + NRT     WN ++  + ++ +   +  L+ QM+  G+ P+Q
Sbjct: 288 LYVKCGDVETALVIFN-LGNRTNVVL-WNLILVAFGQINDLAKSFELFCQMQTAGIRPNQ 345

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FT+P +L+ C   G I +GE++H  +V+ GF  D +V   L+DMY+K G + KAR V + 
Sbjct: 346 FTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           +  KD++S+ SM+ GY+ H    +A   F+ M   G  PD + ++S +   A    +R G
Sbjct: 406 LKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQG 465

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
            Q+H  V   G   D+ I N+L+ +Y++ G++ +A   F+ +  KD ++WN ++   ++ 
Sbjct: 466 LQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQS 525

Query: 372 ---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
               EAL  F +M++ GV  +  TFVS LSA A+L  +K G+++ + ++ K G S   E 
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI-KTGHSFETEV 584

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEF----EASPVVWGALLYACYLHG----------- 473
              +++LYG+ G  ++A      KMEF    E + V W  ++ +C  HG           
Sbjct: 585 GNALISLYGKCGSFEDA------KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQ 638

Query: 474 ----NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
                +   ++ + K + + P  +H +  +I I+G AG+LD  ++ VE M
Sbjct: 639 MKKEGLSYFKSMSDK-YGIRPRPDH-YACVIDIFGRAGQLDRAKKFVEEM 686



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 212/405 (52%), Gaps = 18/405 (4%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++H    T  L K++ + + L+ LY+  GL+  A +VF+++S R   +  W +++SGYA+
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS--WVAMLSGYAQ 120

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
            G  E+A+ LY QM   GV P  +    VL +C    L   G  VH    + GF  + FV
Sbjct: 121 NGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFV 180

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            NAL+ +Y +CG    A  VF  + ++D +++N++++G+        A +IF  M  +G 
Sbjct: 181 GNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGL 240

Query: 292 DPDPVAISSILAN-ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            PD V ISS+LA  ASL  L+ G Q+H ++ + G+  D  +  SL+ +Y K G ++ A  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALV 300

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSLLSACAHLGS 405
           +F+   + +VV WN I+ A  + ++    FE   QM+  G+ P+  T+  +L  C   G 
Sbjct: 301 IFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGE 360

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           + +GE++ S+ V K G    +     ++++Y + G +++A  ++  +M  E   V W ++
Sbjct: 361 IDLGEQIHSLSV-KTGFESDMYVSGVLIDMYSKYGWLEKARRVL--EMLKEKDVVSWTSM 417

Query: 466 LYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAG 507
           + A Y+    C    AA K  +   + PD   N  L   I G AG
Sbjct: 418 I-AGYVQHEYCKDALAAFKEMQKCGIWPD---NIGLASAISGCAG 458



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 195/391 (49%), Gaps = 31/391 (7%)

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-I 210
           M+ R A +  W+  ++G+    +    ++L+     +        F   L+AC G G   
Sbjct: 1   MTRRGAASLGWS--LAGFLAQEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRW 58

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           +V  ++H  A+  G G D  V N L+D+Y+K G ++ AR VF+ +  +D +S+ +ML+GY
Sbjct: 59  QVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN---ASLLRIGAQVHGWVLRRGVEWDL 327
             +GL  EA  ++R M   G  P P  +SS+L++   A L   G  VH    ++G   + 
Sbjct: 119 AQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSET 178

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERD 384
            + N+LI +Y + G    A  +F  MP +D V++N++I  H++      AL  FE+M+  
Sbjct: 179 FVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSS 238

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PD +T  SLL+ACA LG ++ G +L S +  K G+S        +++LY + G ++ 
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLF-KAGMSSDYIMEGSLLDLYVKCGDVET 297

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNV----------CMGETAAQKLFELEPDNEH 494
           A  +++  +    + V+W  +L A    G +          C  +TA      + P N+ 
Sbjct: 298 A--LVIFNLGNRTNVVLWNLILVA---FGQINDLAKSFELFCQMQTAG-----IRP-NQF 346

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +  +++     G +D  E++  + V  G E
Sbjct: 347 TYPCILRTCTCTGEIDLGEQIHSLSVKTGFE 377


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 253/469 (53%), Gaps = 23/469 (4%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLR 134
           ++ L   V  G+     T +S+L  C  L+ +  G +LH     N  L +N  + S L+ 
Sbjct: 200 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVD 259

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPD 193
           +Y     +    +VFD M +R      WN++I+GY++    ++A+ L+  MEE  G+  +
Sbjct: 260 MYCNCKQVLSGRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN 317

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             T   V+ AC   G     E +H   V+ G   D FV N L+DMY++ G I  A  +F 
Sbjct: 318 STTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 377

Query: 254 RIGNKDLISYNSMLTGYI---HHG---LLVEAFD-----IFRGMILNGFDPDPVAISSIL 302
           ++ ++DL+++N+M+TGY+   HH    LL+         + +G       P+ + + +IL
Sbjct: 378 KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 437

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A  S L  G ++H + ++  +  D+ + ++L+ +Y+K G L  +  +FD +PQK+V+
Sbjct: 438 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 497

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WN II A   H    EA+     M   GV P+ +TF+S+ +AC+H G V  G R+F VM
Sbjct: 498 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 557

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-VEKMEFEASPVVWGALLYACYLHGNV 475
              YG+ P  +HYAC+V+L GRAG I EAY ++ +   +F  +   W +LL A  +H N+
Sbjct: 558 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG-AWSSLLGASRIHNNL 616

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +GE AAQ L +LEP+   ++ LL  IY +AG  D    V R + ++G+
Sbjct: 617 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 665



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 202/397 (50%), Gaps = 26/397 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS-----KLLRLYATFG 140
           GI      F +LL+    L+ +E G ++H     ++ +   G+ S      L+ LY   G
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIH----AHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
                ++VFD++S R   +  WNSLIS      ++E A+  +  M +E VEP  FT   V
Sbjct: 61  DFGAVYKVFDRISERNQVS--WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 118

Query: 201 LKACAGLGL---IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           + AC+ L +   + +G++VH   +R G   + F++N LV MY K G +  ++ +    G 
Sbjct: 119 VTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 177

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQV 314
           +DL+++N++L+    +  L+EA +  R M+L G +PD   ISS+L   S   +LR G ++
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 315 HGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           H + L+ G ++ +  + ++L+ +Y    ++     +FD M  + +  WN++I  +S+   
Sbjct: 238 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 297

Query: 371 DHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           D EAL+ F  ME   G+L +  T   ++ AC   G+    E +   +V K G+       
Sbjct: 298 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV-KRGLDRDRFVQ 356

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             ++++Y R G ID A   I  KME +   V W  ++
Sbjct: 357 NTLMDMYSRLGKIDIAMR-IFGKME-DRDLVTWNTMI 391


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/451 (32%), Positives = 252/451 (55%), Gaps = 24/451 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ GI     T+ S+L+ C +   +  G ++H  I  +L              YA+ G+ 
Sbjct: 193 VKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASL--------------YASMGMW 238

Query: 143 DEAHQVFDQM--SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           +EA ++F  M   +       WN++  GY   G Y+ A+ L  QM + G   D       
Sbjct: 239 NEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIG 298

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L AC+ +G  ++G+++H  A+R  FG    V NAL+ MY++C D+  A  +F  +  K L
Sbjct: 299 LGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSL 358

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           I++NS+++G  H     EA  + R M+L G +P+ V I+S+L   A  + L+ G + H +
Sbjct: 359 ITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCY 418

Query: 318 VLRRGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE--- 373
           + RR    D L + N+L+ +Y++ GK+ +A  +FD + ++D +++ S+I  +    E   
Sbjct: 419 MTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQA 478

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  FE+M    + PDH+T +++LSAC+H G V  G+ LF  M   YG++P +EH+ACM 
Sbjct: 479 ALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMT 538

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L+GRAGL+++A   I+  M ++ +P +W  L+ AC +H N  +GE AA+KL E++P+N 
Sbjct: 539 DLFGRAGLLNKAKE-IIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENP 597

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             + L+  +Y  AG  + + +V   + D G+
Sbjct: 598 GYYVLIANMYAAAGCWNKLAKVRIFMRDLGV 628



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 242/525 (46%), Gaps = 73/525 (13%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALD-----SIIQDLESSVQNGITVQTETFASLLE 99
           TF+S   S    LLT+ K F  ++   LD     S+I+   SS    + V     +SLL 
Sbjct: 52  TFTSVDASMIDSLLTSLKEF-TSRGNLLDAFKTVSLIRLHASSASQDLIVHP--ISSLLS 108

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           +C  +K++  G +LH  I +    ++  +  KL+  Y+ F L+ +AH V  + SN     
Sbjct: 109 SCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAH-VITENSN-ILHP 166

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           FPWN LIS Y   G  + A++ Y QM ++G+ PD FT+P VLKAC        GE++ L 
Sbjct: 167 FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC--------GEELDL- 217

Query: 220 AVRFGFGFDGF-VLNALVDMYAKCGDIVKARTVFDRIGNKD----LISYNSMLTGYIHHG 274
               GFG +    +NA   +YA  G   +A  +F  +  +D    +I +N++  GY+  G
Sbjct: 218 ----GFGKEVHESINA--SLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTG 271

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIAN 331
               A ++   M   G   D VA+   L   S +   ++G ++H + +R        + N
Sbjct: 272 NYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKN 331

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLP 388
           +LI +YS+   L  A  LF  M  K +++WNSII       +  EA     +M   G+ P
Sbjct: 332 ALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEP 391

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA--- 445
           +++T  S+L  CA + +++ G+     M  +      +  +  +V++Y R+G + EA   
Sbjct: 392 NYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRV 451

Query: 446 YSMIVEKMEFEASPVVWG------------------------------ALLYACYLHGNV 475
           + M+ E+ +   + ++ G                              A+L AC   G V
Sbjct: 452 FDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLV 511

Query: 476 CMGETAAQK---LFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
             G+   +K   L+ L P  EH F  +  ++G AG L+  + + R
Sbjct: 512 TQGQLLFEKMRSLYGLTPHLEH-FACMTDLFGRAGLLNKAKEIIR 555


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 242/438 (55%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQ 151
           T +S+L+ C  +K + +G  +H L   + L     + + L+ +YAT  + +D+A  VF  
Sbjct: 111 TISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRG 170

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +  +   +  W +LI+GY    +    + ++ QM  E VE + F+F   ++AC  +G   
Sbjct: 171 IHLKNEVS--WTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHT 228

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            GE++H    + GF  +  V+N+++DMY +C    +A   F  +  +DLI++N+++ GY 
Sbjct: 229 FGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY- 287

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC 328
                 E+  +F  M   GF P+    +SI+A  +    L  G Q+HG ++RRG++ +L 
Sbjct: 288 ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLA 347

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDG 385
           ++N+LI +YSK G +  +  +F  M ++D+VSW +++     H    EA+  F++M R G
Sbjct: 348 LSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSG 407

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD + F+++LSAC+H G V  G R F +MV  Y ISP  E Y C+V+L GRAG ++EA
Sbjct: 408 IRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEA 467

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y +I E M F+    VWG  L AC  H    +G+ AA ++ +L P     + +L  IY  
Sbjct: 468 YELI-ESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAA 526

Query: 506 AGRLDDVERVERMLVDRG 523
            G+  +  R+ +++   G
Sbjct: 527 DGKWGEFARLRKLMKRMG 544



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 209/407 (51%), Gaps = 26/407 (6%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +++ L++ Y   GLI EA  +FD+M  R   A  W  +I+GY     +  A  ++ +M  
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVA--WTVMIAGYTSCNNHTHAWMVFCEMMN 102

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDMYAKCG-D 244
           E ++P+ FT   VLKAC G+  +  G  VH  A++ G   DGF+   NAL+DMYA C   
Sbjct: 103 EELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGL--DGFIYVDNALMDMYATCCVS 160

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS-SILA 303
           +  A  VF  I  K+ +S+ +++ GY H         +FR M+L   + +P + S ++ A
Sbjct: 161 MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRA 220

Query: 304 NASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
             S+     G Q+H  V + G E +L + NS++ +Y +     +A   F  M Q+D+++W
Sbjct: 221 CTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITW 280

Query: 362 NSIIHAHSKDH--EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           N++I  + + +  E+L  F  ME +G  P+  TF S+++ACA L  +  G+++   ++ +
Sbjct: 281 NTLIAGYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR 340

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
            G+   +     ++++Y + G I +++ +       +   V W A++     HG    GE
Sbjct: 341 -GLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDL--VSWTAMMIGYGTHG---YGE 394

Query: 480 TAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
            A + LF+      + PD    F  ++    +AG +D+  R  +++V
Sbjct: 395 EAVE-LFDKMVRSGIRPDRV-VFMAILSACSHAGLVDEGLRYFKLMV 439



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G +    TF S++  C  L  +  G ++H  I    L  N  +S+ L+ +Y+  G I ++
Sbjct: 306 GFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADS 365

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           HQVF  MS R   +  W +++ GY   G  E+A+ L+ +M   G+ PD+  F  +L AC+
Sbjct: 366 HQVFGGMSRRDLVS--WTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACS 423

Query: 206 GLGLIRVGEK-VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
             GL+  G +   L    +    D  +   +VD+  + G + +A  + + +
Sbjct: 424 HAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESM 474


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 140/436 (32%), Positives = 240/436 (55%), Gaps = 10/436 (2%)

Query: 96  SLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           ++L T Y QL   E  +++   +  +    N+   S +L        +  A  +FD++  
Sbjct: 321 NILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK 380

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            +     WN+L+SGY +   +++ I L+ +M+ + V+PD+ T   +L +C+ LG   +G+
Sbjct: 381 PSVTT--WNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGK 438

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH  +VR     D FV + L+D+Y+KCG +  A  +F+ +  +D++ +NSM++G   H 
Sbjct: 439 QVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHS 498

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L  EAFD  + M  NG  P   + +S++   A  S +  G Q+H  VL+ G + ++ +  
Sbjct: 499 LSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGC 558

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           SLI +Y+K G +D A   F+ M  K++V+WN +IH ++++    +A+  FE M      P
Sbjct: 559 SLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKP 618

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TF+++L+ C+H G V      F+ M   YGI+P VEHY C+++   RA    E  + 
Sbjct: 619 DSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEA- 677

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           ++ KM ++  P++W  LL AC +H N  +GE +A+ LF L+P N   + LL  IY   GR
Sbjct: 678 VIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGR 737

Query: 509 LDDVERVERMLVDRGL 524
             D   V  ++  RG+
Sbjct: 738 HGDASAVRALMSSRGV 753



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 205/456 (44%), Gaps = 32/456 (7%)

Query: 86  GITVQTETFASLLETCYQLKAVE-HGIKLHRLIP-TNLLRKNKGISSKLLRLYATFGLID 143
           G+   T     L+E  Y L  +  H ++  R +P  N+   N  IS+         G + 
Sbjct: 40  GLAADTFLLNRLVEL-YSLSGLPCHALRAFRALPHPNVYSYNAAISAA-----CRAGDLA 93

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A  +  +M +R A +  WN++I+  A  G   +A+ +Y  M +EG+ P  FT   VL A
Sbjct: 94  AARDLLGRMPDRNAVS--WNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSA 151

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  +  +  G + H  AV+ G     FV N L+ MY KCG +  A  +FD + + + +S+
Sbjct: 152 CGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSF 211

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-----------ASLLRIGA 312
            +M+ G    G + +A  +F  M   G   DPVA+SS+L             A  +++  
Sbjct: 212 TAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQ 271

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
            +H  V+R+G   D  + NSL+ +Y+K  K+D+A  +F+ +    +VSWN +I  + +  
Sbjct: 272 SIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLG 331

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
               A+   E M+  G  P+ +T+ ++L++C     V     +F  + +     P V  +
Sbjct: 332 CYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK-----PSVTTW 386

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFE 487
             +++ YG+  L  E   +          P       +L +C   GN  +G+        
Sbjct: 387 NTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVR 446

Query: 488 LEPDNEHNFEL-LIKIYGNAGRLDDVERVERMLVDR 522
           L   N+      LI IY   G++     +  M+ +R
Sbjct: 447 LLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTER 482



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 16/254 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     ++AS++  C +L ++  G ++H  +  +   +N  +   L+ +YA  G +D
Sbjct: 512 ENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMD 571

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F+ M  +   A  WN +I GYA+ G  E A+ L+  M     +PD  TF  VL  
Sbjct: 572 DARLFFNCMIVKNLVA--WNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTG 629

Query: 204 CAGLGLIRVGEKV-HLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-D 259
           C+  GL  V E V   +++   +G    V     L+D  A+     +   V  ++  K D
Sbjct: 630 CSHSGL--VDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDD 687

Query: 260 LISYNSMLTG-YIHHGLLVEAFDIFRGMILNGFDPDP-VAISSILA------NASLLRIG 311
            I +  +L    +HH   +  F       L+  +P P V +S+I A      +AS +R  
Sbjct: 688 PILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRAL 747

Query: 312 AQVHGWVLRRGVEW 325
               G V  RG  W
Sbjct: 748 MSSRGVVKGRGYSW 761



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 101/281 (35%), Gaps = 83/281 (29%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYS-------------------------------KDGK 342
            H  VL  G+  D  + N L+ +YS                               + G 
Sbjct: 32  AHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGD 91

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSA 399
           L  A  L   MP ++ VSWN++I A ++     EAL  ++ M ++G+ P + T  S+LSA
Sbjct: 92  LAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSA 151

Query: 400 CAHLGSVKVGERLFSVMVEKYGI-------------------------------SPRVEH 428
           C  + ++  G R   + V K G+                               SP    
Sbjct: 152 CGAVAALDDGRRCHGLAV-KVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVS 210

Query: 429 YACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           +  M+    + G +D+A  +   + +      PV   ++L AC      C G+    +  
Sbjct: 211 FTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGAC---AQACAGDYNVARAI 267

Query: 487 ELEP------------DNEHNFELLIKIYGNAGRLDDVERV 515
           +L               ++H    L+ +Y    ++D+  +V
Sbjct: 268 QLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKV 308


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 239/439 (54%), Gaps = 42/439 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  +L+ C     +  G K+H       L     + + L+ +Y   G + EA  V D+M
Sbjct: 142 TFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R   +  WNSL+ GYA+   ++DA+ +  +ME   +  D  T   +L A +      V
Sbjct: 202 SRRDVVS--WNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
                                    MY K         +F ++G K L+S+N M+  Y+ 
Sbjct: 260 -------------------------MYVK--------DMFFKMGKKSLVSWNVMIGVYMK 286

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           + + VEA +++  M  +GF+PD V+I+S+L    + S L +G ++HG++ R+ +  +L +
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGV 386
            N+LI +Y+K G L++A  +F++M  +DVVSW ++I A+    +  +A+  F +++  G+
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
           +PD + FV+ L+AC+H G ++ G   F +M + Y I+PR+EH ACMV+L GRAG + EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + M  E +  VWGALL AC +H +  +G  AA KLF+L P+    + LL  IY  A
Sbjct: 467 RFI-QDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 507 GRLDDVERVERMLVDRGLE 525
           GR ++V  +  ++  +GL+
Sbjct: 526 GRWEEVTNIRNIMKSKGLK 544



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 195/414 (47%), Gaps = 41/414 (9%)

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           +H  I    LR N  +  KL+R YA+   +  A +VFD++  R       N +I  Y   
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIII--NVMIRSYVNN 118

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G Y + + ++  M    V PD +TFP VLKAC+  G I +G K+H  A + G     FV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N LV MY KCG + +AR V D +  +D++S+NS++ GY  +    +A ++ R M      
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
            D   ++S+L   S                   +    N   V+Y KD        +F  
Sbjct: 239 HDAGTMASLLPAVS-------------------NTTTEN---VMYVKD--------MFFK 268

Query: 353 MPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M +K +VSWN +I  + K+    EA+  + +ME DG  PD ++  S+L AC    ++ +G
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
           +++    +E+  + P +     ++++Y + G +++A   + E M+     V W A++ A 
Sbjct: 329 KKIHG-YIERKKLIPNLLLENALIDMYAKCGCLEKARD-VFENMK-SRDVVSWTAMISAY 385

Query: 470 YLHGNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
              G  C       KL +  L PD+   F   +    +AG L++     +++ D
Sbjct: 386 GFSGRGCDAVALFSKLQDSGLVPDS-IAFVTTLAACSHAGLLEEGRSCFKLMTD 438



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G      +  S+L  C    A+  G K+H  I    L  N  + + L+ +YA  G +++
Sbjct: 303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF+ M +R   +  W ++IS Y   G   DA+AL+ ++++ G+ PD   F   L AC
Sbjct: 363 ARDVFENMKSRDVVS--WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAAC 420

Query: 205 AGLGLIRVGE---KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           +  GL+  G    K+  D  +     +   L  +VD+  + G + +A
Sbjct: 421 SHAGLLEEGRSCFKLMTDHYKITPRLEH--LACMVDLLGRAGKVKEA 465


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 238/431 (55%), Gaps = 15/431 (3%)

Query: 102 YQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           +++  ++  I     +P  N++  N      L+  +   G +D A +VFD+M  R     
Sbjct: 3   FKMGEIQEAIAFFNAMPMRNIMSHNI-----LINGHVQHGDLDSAIKVFDEMLERNVAT- 56

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            WN+++SG  +    E+ + L+ +M E G  PD+FT   VL+ CAGL     G++VH   
Sbjct: 57  -WNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYV 115

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
           +++G+ F+  V ++L  MY K G + +   V   +  ++++++N+++ G   +G      
Sbjct: 116 LKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVL 175

Query: 281 DIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVY 337
           D++  M ++G  PD + + S++++++ L     G Q+H   ++ G    + + +SLI +Y
Sbjct: 176 DLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMY 235

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           SK G L+ +          D V W+S+I A   H +  EA+  FEQME++G+  + +TF+
Sbjct: 236 SKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFL 295

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           SLL AC+H G  + G   F +MVEKYG+ PR+EHY C+V+L GR+G +DEA +MI   M 
Sbjct: 296 SLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMI-RSMP 354

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            EA  V+W  LL AC +H N  M    A+++  L P +   + LL  I+ +A R  DV +
Sbjct: 355 LEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSK 414

Query: 515 VERMLVDRGLE 525
           V   + DR ++
Sbjct: 415 VRTTMRDRNVK 425


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 242/438 (55%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQ 151
           T +S+L+ C  +K + +G  +H L   + L     + + L+ +YAT  + +D+A  VF  
Sbjct: 95  TISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRG 154

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +  +   +  W +LI+GY    +    + ++ QM  E VE + F+F   ++AC  +G   
Sbjct: 155 IHLKNEVS--WTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHT 212

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            GE++H    + GF  +  V+N+++DMY +C    +A   F  +  +DLI++N+++ GY 
Sbjct: 213 FGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY- 271

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC 328
                 E+  +F  M   GF P+    +SI+A  +    L  G Q+HG ++RRG++ +L 
Sbjct: 272 ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLA 331

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDG 385
           ++N+LI +YSK G +  +  +F  M ++D+VSW +++     H    EA+  F++M R G
Sbjct: 332 LSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSG 391

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD + F+++LSAC+H G V  G R F +MV  Y ISP  E Y C+V+L GRAG ++EA
Sbjct: 392 IRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEA 451

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y +I E M F+    VWG  L AC  H    +G+ AA ++ +L P     + +L  IY  
Sbjct: 452 YELI-ESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAA 510

Query: 506 AGRLDDVERVERMLVDRG 523
            G+  +  R+ +++   G
Sbjct: 511 DGKWGEFARLRKLMKRMG 528



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 201/407 (49%), Gaps = 42/407 (10%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +++ L++ Y   GLI EA                   +I+GY     +  A  ++ +M  
Sbjct: 45  LATTLIKSYFGKGLIGEA------------------LMIAGYTSCNNHTHAWMVFCEMMN 86

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDMYAKCG-D 244
           E ++P+ FT   VLKAC G+  +  G  VH  A++ G   DGF+   NAL+DMYA C   
Sbjct: 87  EELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGL--DGFIYVDNALMDMYATCCVS 144

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS-SILA 303
           +  A  VF  I  K+ +S+ +++ GY H         +FR M+L   + +P + S ++ A
Sbjct: 145 MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRA 204

Query: 304 NASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
             S+     G Q+H  V + G E +L + NS++ +Y +     +A   F  M Q+D+++W
Sbjct: 205 CTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITW 264

Query: 362 NSIIHAHSKDH--EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           N++I  + + +  E+L  F  ME +G  P+  TF S+++ACA L  +  G+++   ++ +
Sbjct: 265 NTLIAGYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR 324

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
            G+   +     ++++Y + G I +++ +       +   V W A++     HG    GE
Sbjct: 325 -GLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDL--VSWTAMMIGYGTHG---YGE 378

Query: 480 TAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
            A + LF+      + PD    F  ++    +AG +D+  R  +++V
Sbjct: 379 EAVE-LFDKMVRSGIRPDRV-VFMAILSACSHAGLVDEGLRYFKLMV 423



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G +    TF S++  C  L  +  G ++H  I    L  N  +S+ L+ +Y+  G I ++
Sbjct: 290 GFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADS 349

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           HQVF  MS R   +  W +++ GY   G  E+A+ L+ +M   G+ PD+  F  +L AC+
Sbjct: 350 HQVFGGMSRRDLVS--WTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACS 407

Query: 206 GLGLIRVGEK-VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
             GL+  G +   L    +    D  +   +VD+  + G + +A  + + +
Sbjct: 408 HAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESM 458



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 10/231 (4%)

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G  V A T+      K LI    M+ GY        A+ +F  M+    DP+   ISS+L
Sbjct: 41  GPSVLATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVL 100

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG-KLDQACWLFDHMPQKDV 358
                   L  G  VHG  ++ G++  + + N+L+ +Y+     +D AC +F  +  K+ 
Sbjct: 101 KACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNE 160

Query: 359 VSWNSII--HAHSKD-HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           VSW ++I  + H  D +  L  F QM  + V  +  +F   + AC  +GS   GE+L + 
Sbjct: 161 VSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAA 220

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            V K+G    +     ++++Y R     EA     E  + +   + W  L+
Sbjct: 221 -VTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDL--ITWNTLI 268


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 254/451 (56%), Gaps = 12/451 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
            + GI     T  S+L+ C  LK +  G  +H L+    L  +  + + L+ +Y+    +
Sbjct: 242 TEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNV 301

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A + F ++  +   +  WN ++S Y     + +A+AL   M  EG E D+ T   VL+
Sbjct: 302 HSAFKAFKEIPEKNIIS--WNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQ 359

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
                        VH   +R G+  +  +LN+++D YAKC  +  AR VFD +  KD+++
Sbjct: 360 IAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVA 419

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +++M+ G+  +G   EA  +F+ M      P+ V+I +++   A ++ LR     HG  +
Sbjct: 420 WSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAV 478

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           RRG+  ++ I  S+I +YSK G ++ +   F+ +PQK+VV W+++I A   +   HEAL+
Sbjct: 479 RRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALM 538

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            FE+++++G  P+ +T +SLLSAC+H G ++ G   F+ MV+K+GI P +EHY+C+V++ 
Sbjct: 539 LFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHYSCIVDML 598

Query: 437 GRAGLIDEAYSMIVEKM--EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
            RAG  +EA  +I EK+  E EA   +WG LL +C  +GN+ +G  AA ++ +LEP +  
Sbjct: 599 SRAGKFNEALELI-EKLPKEMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSA 657

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + L   +Y N G + D  ++ R+  ++G++
Sbjct: 658 GYMLASNLYANCGLMIDSAKMRRLAKEKGVK 688



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 204/387 (52%), Gaps = 19/387 (4%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           +++   +LK    G   H  I  +       + + LL LYA   +   AH++F +MS R 
Sbjct: 154 VIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMY-FAHKLFGEMSVRN 212

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
                W+ +I G+ ++GE E    ++  M  E G+ PD  T   VLKAC  L  I +G  
Sbjct: 213 DVV-SWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTM 271

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH   +  G   D FV N+L+DMY+KC ++  A   F  I  K++IS+N ML+ YI +  
Sbjct: 272 VHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNES 331

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANS 332
            +EA  +   M+  G + D V ++++L  A       +   VHG ++R+G E +  + NS
Sbjct: 332 HLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNS 391

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           +I  Y+K   ++ A  +FD M +KDVV+W+++I     + K  EA+  F+QM  + V+P+
Sbjct: 392 VIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEE-VIPN 450

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID---EAY 446
           +++ ++L+ ACA    ++  +    + V + G++  V+    ++++Y + G I+    A+
Sbjct: 451 NVSIMNLMEACAVSAELRQSKWAHGIAVRR-GLASEVDIGTSIIDMYSKCGDIEASIRAF 509

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHG 473
           + I +K     + V W A++ A  ++G
Sbjct: 510 NQIPQK-----NVVCWSAMISAFRING 531



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 184/407 (45%), Gaps = 43/407 (10%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T    S+L+ C    +   G  +H  +     + +  I++  +  Y  +G +D A + FD
Sbjct: 48  TWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFD 106

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
              N+ + +  WN ++ G    G     +  + +      +P+  +   V++A   L + 
Sbjct: 107 STKNKDSVS--WNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIY 164

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSMLTG 269
             G   H    R GF     V N+L+ +YA+   +  A  +F  +    D++S++ M+ G
Sbjct: 165 SQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAHKLFGEMSVRNDVVSWSVMIGG 223

Query: 270 YIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEW 325
           ++  G   + F +FR M+   G  PD V + S+L   + L+   +G  VHG V+ RG+E 
Sbjct: 224 FVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLED 283

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH--SKDH-EALIYFEQME 382
           DL + NSLI +YSK   +  A   F  +P+K+++SWN ++ A+  ++ H EAL     M 
Sbjct: 284 DLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMV 343

Query: 383 RDGVLPDHLTFVSLLSACAH-LGSVKV--------------GERLFSVMVEKYGISPRVE 427
           R+G   D +T  ++L    H L S+K                E L + +++ Y     VE
Sbjct: 344 REGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVE 403

Query: 428 ---------------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
                           ++ M+  + R G  DEA S + ++M  E  P
Sbjct: 404 LARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAIS-VFKQMNEEVIP 449



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 150/309 (48%), Gaps = 14/309 (4%)

Query: 173 GEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
           G +++A+ LY ++   G +  D +  P +LKAC+      +G  +H   ++ G      +
Sbjct: 26  GNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIKQGCQSSTSI 84

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
            N+ +D Y K GD+  A+  FD   NKD +S+N M+ G   +G ++     F       F
Sbjct: 85  ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHF 144

Query: 292 DPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
            P+  ++  ++     L+I +Q    HG++ R G    L + NSL+ +Y+ +  +  A  
Sbjct: 145 QPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYA-EVHMYFAHK 203

Query: 349 LFDHMP-QKDVVSWNSIIHAH---SKDHEALIYFEQMERD-GVLPDHLTFVSLLSACAHL 403
           LF  M  + DVVSW+ +I       +D +  + F  M  + G+ PD +T VS+L AC +L
Sbjct: 204 LFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNL 263

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
             + +G  +  +++ + G+   +     ++++Y +   +  A+    E    E + + W 
Sbjct: 264 KDISLGTMVHGLVIFR-GLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIP--EKNIISWN 320

Query: 464 ALLYACYLH 472
            +L A  L+
Sbjct: 321 LMLSAYILN 329


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 240/440 (54%), Gaps = 9/440 (2%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           + TFA  L+   +   + +G  +H         +   + + L  +Y+     D   ++F 
Sbjct: 252 SHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFG 311

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +MS  T     W +LI  Y ++G+ E A+  + +M +  V P+++TF  V+ ACA L + 
Sbjct: 312 KMS--TPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAIT 369

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           + GE++H  A+R G      V N+++ +Y+KCG + +A  VFD +  KD+IS++++++ Y
Sbjct: 370 KWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVY 429

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDL 327
                  EAF+    M   G  P+  A++S+L+   + +LL  G QVH + L  G++ + 
Sbjct: 430 CQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHET 489

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            + ++LI +YS+ G L +A  +FD +   D+VSW ++I+    H    EA+  FE +   
Sbjct: 490 MVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSV 549

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G++PD++TF+ +L+AC H G V +G   + +M  +Y I+P  EHY C+++L  RAG + E
Sbjct: 550 GLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSE 609

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  M V  M F    VVW  LL AC  HG++     AA+++  L P++      L  IY 
Sbjct: 610 AEHM-VRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYS 668

Query: 505 NAGRLDDVERVERMLVDRGL 524
            +GR ++   V +++  +G+
Sbjct: 669 ASGRREEAAHVRKLMKSKGV 688



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 197/401 (49%), Gaps = 19/401 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V +G+       +  L+ C     V  G  LH     + L  +  +SS L+ +Y   G  
Sbjct: 143 VDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKT 202

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           ++   VF+ M+ R   +  W ++I G    G   D ++ + +M    V  D  TF   LK
Sbjct: 203 EQGCSVFENMTTRNVVS--WTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALK 260

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           A A  GL+  G+ +H   ++ GF    +V+N L  MY+KC        +F ++   D++S
Sbjct: 261 ASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVS 320

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + +++  Y+  G    A D F+ M  +   P+    +S++   AN ++ + G Q+HG  L
Sbjct: 321 WTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHAL 380

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALI 376
           R G+   L ++NS+I +YSK G L +A  +FD M +KD++SW++II  +   S   EA  
Sbjct: 381 RLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFN 440

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACM 432
           Y   M R+G  P+     S+LS C  +  ++ G++     V  Y +   ++H    ++ +
Sbjct: 441 YLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQ-----VHAYALCIGLDHETMVHSAL 495

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           +++Y R+G + EA S I + ++     V W A++     HG
Sbjct: 496 ISMYSRSGNLQEA-SKIFDSIK-NNDIVSWTAMINGYAEHG 534



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 178/344 (51%), Gaps = 13/344 (3%)

Query: 118 PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177
           PT     N    +  L+     G I EA  +F++MS+R   +  W +LI+GY       +
Sbjct: 76  PTAYYVPNMPELNSQLKQLMKLGKICEARDMFNKMSHRDEIS--WTNLIAGYVNAANSNE 133

Query: 178 AIALYFQM-EEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNAL 235
           A+ L+  M  + G++ DQF     LKACA LG+ +  GE +H  +V+ G     FV +AL
Sbjct: 134 ALILFSNMWVDSGLQKDQFVVSVALKACA-LGMNVYFGELLHGFSVKSGLINSVFVSSAL 192

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN--GFDP 293
           VDMY K G   +  +VF+ +  ++++S+ +++ G +H G  ++    F  M  +  G+D 
Sbjct: 193 VDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDS 252

Query: 294 DPVAIS-SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              A++    A + LL  G  +H   +++G      + N+L  +YSK  K D    LF  
Sbjct: 253 HTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGK 312

Query: 353 MPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           M   DVVSW ++I  + +   +  AL  F++M +  V P+  TF S++SACA+L   K G
Sbjct: 313 MSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWG 372

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           E++    + + G+   +     ++ LY + GL+ EA S++ + M
Sbjct: 373 EQIHGHAL-RLGLVDALSVSNSIITLYSKCGLLQEA-SLVFDGM 414


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 248/431 (57%), Gaps = 11/431 (2%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
            S+L +C   +A+E G ++H       L  ++ + + L+ +YA   L+ +A +VFD M+ 
Sbjct: 335 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 394

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           +   ++  N++I GY+   +  +A+ L+ +M      P   TF  +L   A L  + + +
Sbjct: 395 QNVISY--NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSK 452

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   ++FG   D F  +AL+D+Y+KC  +  AR VF+ +  KD++ +N+M  GY  H 
Sbjct: 453 QIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHL 512

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIAN 331
              EA  ++  +  +   P+    ++++  AS    LR G Q H  +++ G+++   + N
Sbjct: 513 ENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN 572

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +L+ +Y+K G +++A  +F+    +DVV WNS+I  H++     EAL  F +M ++G+ P
Sbjct: 573 ALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP 632

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +++TFV++LSAC+H G V+ G   F+ M   +GI P  EHYAC+V+L GR+G + EA   
Sbjct: 633 NYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEF 691

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           I EKM  E + +VW +LL AC + GNV +G+ AA+     +P +  ++ LL  I+ + G 
Sbjct: 692 I-EKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGM 750

Query: 509 LDDVERV-ERM 518
             DV++V +RM
Sbjct: 751 WADVKKVRDRM 761



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 233/444 (52%), Gaps = 20/444 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            AS++  C QL  VE G +LH  +  +   ++  + + L+  Y+  G I+EA  VFDQ+S
Sbjct: 132 LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS 191

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +TA    W ++I+GY + G    ++ L+ QM E  V PD++    VL AC+ L  +  G
Sbjct: 192 EKTAVT--WTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 249

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H   +R G   D  V+N L+D Y KC  +   R +FD++  K++IS+ +M++GY+ +
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 309

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIA 330
               EA  +F  M   G+ PD  A +S+L +      L  G QVH + ++  +E D  + 
Sbjct: 310 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVK 369

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVL 387
           N LI +Y+K   L  A  +FD M +++V+S+N++I  +S   K  EAL  F +M      
Sbjct: 370 NGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFP 429

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P  LTFVSLL   A L ++++ +++  +++ K+G+S  +   + ++++Y +   + +A  
Sbjct: 430 PSLLTFVSLLGVSASLFALELSKQIHGLII-KFGVSLDLFAGSALIDVYSKCSYVKDARH 488

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL-----FELEPDNEHNFELLIKI 502
            + E+M  E   VVW A+ +    H    +    A KL     F  +  NE  F  LI  
Sbjct: 489 -VFEEMN-EKDIVVWNAMFFGYTQH----LENEEALKLYSTLQFSRQKPNEFTFAALITA 542

Query: 503 YGNAGRLDDVERVERMLVDRGLEF 526
             N   L   ++    LV  GL+F
Sbjct: 543 ASNLASLRHGQQFHNQLVKMGLDF 566



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 195/363 (53%), Gaps = 18/363 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           FA+LL+       + H   +H  I  + L+ +  +++ L+ + +    +D A  VFD+M 
Sbjct: 30  FANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMP 89

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRV 212
           ++      W+S++S Y++ G  E+A+ ++  ++ + G  P++F    V++AC  LG++  
Sbjct: 90  HKNLIT--WSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK 147

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   VR GF  D +V  +L+D Y+K G+I +AR VFD++  K  +++ +++ GY  
Sbjct: 148 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 207

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCI 329
            G    + ++F  M      PD   +SS+L+  S+L     G Q+H +VLRRG E D+ +
Sbjct: 208 CGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSV 267

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
            N LI  Y+K  ++     LFD M  K+++SW ++I  +   S D EA+  F +M R G 
Sbjct: 268 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGW 327

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLI 442
            PD     S+L++C    +++ G +     V  Y I   +E        ++++Y ++ L+
Sbjct: 328 KPDGFACTSVLTSCGSREALEQGRQ-----VHAYTIKANLESDEFVKNGLIDMYAKSNLL 382

Query: 443 DEA 445
            +A
Sbjct: 383 IDA 385



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 147/283 (51%), Gaps = 14/283 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL     L A+E   ++H LI    +  +    S L+ +Y+    + +A  VF++M
Sbjct: 434 TFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 493

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + +      WN++  GY +  E E+A+ LY  ++    +P++FTF  ++ A + L  +R 
Sbjct: 494 NEKDIVV--WNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRH 551

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++ H   V+ G  F  FV NALVDMYAKCG I +AR +F+    +D++ +NSM++ +  
Sbjct: 552 GQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQ 611

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASL-------LRIGAQVHGWVLRRGVEW 325
           HG   EA  +FR M+  G  P+ V   ++L+  S        L     + G+ ++ G E 
Sbjct: 612 HGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEH 671

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
             C+ + L     + GKL +A    + MP +   + W S++ A
Sbjct: 672 YACVVSLL----GRSGKLFEAKEFIEKMPIEPAAIVWRSLLSA 710


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/436 (32%), Positives = 240/436 (55%), Gaps = 10/436 (2%)

Query: 96  SLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           ++L T Y QL   E  +++   +  +    N+   S +L        +  A  +FD++  
Sbjct: 220 NILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK 279

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
            +     WN+L+SGY +   +++ I L+ +M+ + V+PD+ T   +L +C+ LG   +G+
Sbjct: 280 PSVTT--WNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGK 337

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           +VH  +VR     D FV + L+D+Y+KCG +  A  +F+ +  +D++ +NSM++G   H 
Sbjct: 338 QVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHS 397

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
           L  EAFD  + M  NG  P   + +S++   A  S +  G Q+H  VL+ G + ++ +  
Sbjct: 398 LSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGC 457

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           SLI +Y+K G +D A   F+ M  K++V+WN +IH ++++    +A+  FE M      P
Sbjct: 458 SLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKP 517

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D +TF+++L+ C+H G V      F+ M   YGI+P VEHY C+++   RA    E  + 
Sbjct: 518 DSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEA- 576

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           ++ KM ++  P++W  LL AC +H N  +GE +A+ LF L+P N   + LL  IY   GR
Sbjct: 577 VIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGR 636

Query: 509 LDDVERVERMLVDRGL 524
             D   V  ++  RG+
Sbjct: 637 HGDASAVRALMSSRGV 652



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 212/435 (48%), Gaps = 66/435 (15%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKA----VEHGIKLHRLIPTNLLRKNK 126
           A+D  ++      + GI V     +S+L  C Q  A    V   I+L + I   ++RK  
Sbjct: 122 AVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGF 181

Query: 127 G----ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
           G    + + L+ LYA    +DEA +VF+ +S+ +  +  WN LI+GY +LG YE A+ + 
Sbjct: 182 GSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVS--WNILITGYGQLGCYERAMEVL 239

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
             M+E G EP++ T+  +L +C                                    K 
Sbjct: 240 EFMQESGFEPNEVTYSNMLASC-----------------------------------IKA 264

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
            D+  AR +FD+I    + ++N++L+GY    L  E  D+FR M      PD   ++ IL
Sbjct: 265 RDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVIL 324

Query: 303 ANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           ++ S L    +G QVH   +R  +  D+ +A+ LI +YSK G++  A  +F+ M ++DVV
Sbjct: 325 SSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVV 384

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            WNS+I     HS   EA  + +QM  +G+ P   ++ S+++ CA L S+  G ++ +  
Sbjct: 385 CWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHA-Q 443

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAY----SMIVEKMEFEASPVVWGALLYACYLH 472
           V K G    V     ++++Y ++G +D+A      MIV+ +      V W  +++    +
Sbjct: 444 VLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNL------VAWNEMIHGYAQN 497

Query: 473 GNVCMGETAAQKLFE 487
           G    GE A + LFE
Sbjct: 498 G---FGEKAVE-LFE 508



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 179/388 (46%), Gaps = 24/388 (6%)

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M +R A +  WN++I+  A  G   +A+ +Y  M +EG+ P  FT   VL AC  +  + 
Sbjct: 1   MPDRNAVS--WNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALD 58

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
            G + H  AV+ G     FV N L+ MY KCG +  A  +FD + + + +S+ +M+ G  
Sbjct: 59  DGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLA 118

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-----------ASLLRIGAQVHGWVLR 320
             G + +A  +F  M   G   DPVA+SS+L             A  +++   +H  V+R
Sbjct: 119 QGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVR 178

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIY 377
           +G   D  + NSL+ +Y+K  K+D+A  +F+ +    +VSWN +I  + +      A+  
Sbjct: 179 KGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEV 238

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
            E M+  G  P+ +T+ ++L++C     V     +F  + +     P V  +  +++ YG
Sbjct: 239 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK-----PSVTTWNTLLSGYG 293

Query: 438 RAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           +  L  E   +          P       +L +C   GN  +G+        L   N+  
Sbjct: 294 QEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMF 353

Query: 496 FEL-LIKIYGNAGRLDDVERVERMLVDR 522
               LI IY   G++     +  M+ +R
Sbjct: 354 VASGLIDIYSKCGQVGIALIIFNMMTER 381



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 16/254 (6%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     ++AS++  C +L ++  G ++H  +  +   +N  +   L+ +YA  G +D
Sbjct: 411 ENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMD 470

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A   F+ M  +   A  WN +I GYA+ G  E A+ L+  M     +PD  TF  VL  
Sbjct: 471 DARLFFNCMIVKNLVA--WNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTG 528

Query: 204 CAGLGLIRVGEKV-HLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRIGNK-D 259
           C+  GL  V E V   +++   +G    V     L+D  A+     +   V  ++  K D
Sbjct: 529 CSHSGL--VDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDD 586

Query: 260 LISYNSMLTG-YIHHGLLVEAFDIFRGMILNGFDPDP-VAISSILA------NASLLRIG 311
            I +  +L    +HH   +  F       L+  +P P V +S+I A      +AS +R  
Sbjct: 587 PILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRAL 646

Query: 312 AQVHGWVLRRGVEW 325
               G V  RG  W
Sbjct: 647 MSSRGVVKGRGYSW 660


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 240/449 (53%), Gaps = 65/449 (14%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+ +YA  G +++A +VF++M  R      WN++++GY++ G +EDA++L+ +M E
Sbjct: 76  VGNALVDMYAKCGKMEDASKVFERM--RFKDVVTWNAMVTGYSQNGRFEDALSLFGKMRE 133

Query: 188 EGVE-----------------------------------PDQFTFPRVLKACAGLGLIRV 212
           E +E                                   P+  T   +L ACA +G +  
Sbjct: 134 EKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLH 193

Query: 213 GEKVHLDAVRFGFGF-------DGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISY 263
           G++ H  +V+F           D  V+NAL+DMYAKC  +  AR +FD I   ++D++++
Sbjct: 194 GKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTW 253

Query: 264 NSMLTGYIHHGLLVEAFDIFRGM--ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
             M+ GY  HG    A  +F  M  I N   P+   IS +L   A  + L+ G Q+H +V
Sbjct: 254 TVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYV 313

Query: 319 LRRG-VEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI 376
           LRR  ++ D L +AN LI +YSK G +D A  +FD M +++ VSW S++  +     AL+
Sbjct: 314 LRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGAALV 373

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
                       D +TF+ +L AC+H G V  G  LF  M + + + P VEHYACM +L+
Sbjct: 374 L-----------DGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLF 422

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG + EA + ++  M  E +PVVW ALL AC  H N  + E AA+KL EL+ DN+  +
Sbjct: 423 GRAGRLCEA-TRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTY 481

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  IY NA R  DV R+  ++   G++
Sbjct: 482 TLLSNIYANARRWKDVARIRYLMKRTGIK 510



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 193/434 (44%), Gaps = 105/434 (24%)

Query: 162 WNSLISGYAELGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
           WNS++S Y+      DA+ L+ +M    G+ PD      +L     LG            
Sbjct: 26  WNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGF----------- 74

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL---- 276
                    FV NALVDMYAKCG +  A  VF+R+  KD++++N+M+TGY  +G      
Sbjct: 75  ---------FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDAL 125

Query: 277 -------------------------------VEAFDIFRGMILNGFDPDPVAISSILANA 305
                                           EA D+FR M      P+ V + S+L+  
Sbjct: 126 SLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSAC 185

Query: 306 SLLRIGAQVHG---------WVLR---RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
           +   +GA +HG         ++L+        DL + N+LI +Y+K   L+ A  +FD +
Sbjct: 186 A--SVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 354 PQK--DVVSWNSIIHA---HSKDHEALIYFEQMER--DGVLPDHLTFVSLLSACAHLGSV 406
             K  DVV+W  +I     H   + AL  F +M +  + ++P+  T   +L ACA L ++
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 407 KVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
           K G+++ + ++ +  I   V   A C++++Y ++G +D A  ++ + M  + + V W +L
Sbjct: 304 KFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA-QVVFDSMS-KRNAVSWTSL 361

Query: 466 ---------------------LYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIK 501
                                LYAC   G V  G     ++   F ++P  EH +  +  
Sbjct: 362 LTGYGMHGAALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEH-YACMAD 420

Query: 502 IYGNAGRLDDVERV 515
           ++G AGRL +  R+
Sbjct: 421 LFGRAGRLCEATRL 434



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 147/303 (48%), Gaps = 37/303 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLR-------KNKGISSKLLRLYATFGLIDEA 145
           T  SLL  C  + A+ HG + H      +L+        +  + + L+ +YA    ++ A
Sbjct: 177 TLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVA 236

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLKA 203
             +FD++  +      W  +I GYA+ G+   A+ L+ +M   +  + P+ FT   VL A
Sbjct: 237 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMA 296

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDG---FVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           CA L  ++ G+++H   +R     D    FV N L+DMY+K GD+  A+ VFD +  ++ 
Sbjct: 297 CARLAALKFGKQIHAYVLRRS-RIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNA 355

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV-----H 315
           +S+ S+LTGY  HG           ++L+G     + +    +++ ++  G  +      
Sbjct: 356 VSWTSLLTGYGMHGA---------ALVLDGI--TFLVVLYACSHSGMVDRGIDLFYRMSK 404

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV-VSWNSIIHA---HSKD 371
            +V+  GVE   C+A+    ++ + G+L +A  L + M  +   V W +++ A   HS +
Sbjct: 405 DFVVDPGVEHYACMAD----LFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNE 460

Query: 372 HEA 374
             A
Sbjct: 461 ELA 463



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 21/148 (14%)

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANASLLRIGAQVHGWVL 319
           +S+NS+++ Y H  +  +A  +FR M +  G  PD V + +IL  +  L           
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFL----------- 72

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
                    + N+L+ +Y+K GK++ A  +F+ M  KDVV+WN+++  +S++    +AL 
Sbjct: 73  ------GFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALS 126

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLG 404
            F +M  + +  D +T+ S++S  A  G
Sbjct: 127 LFGKMREEKIELDVVTWSSVISGYAQRG 154


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 246/462 (53%), Gaps = 20/462 (4%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE-HGIKLHRLIPTNLLRKNKGIS 129
           A +++IQ L    + G+     T  ++L  C ++   + HG  + ++    L  ++   S
Sbjct: 126 AAEALIQML----KQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKI---GLRSQSVYSS 178

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y+  G    A  VFD +  +   +  W S++  Y   G  E+A+ ++  M  EG
Sbjct: 179 TALIDFYSRNGEFKLAKAVFDSLHCKNVVS--WCSMMQLYIRDGRLEEALQVFGDMISEG 236

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V+P++F    VL AC  +GL   G ++H  A++     D  V NAL+ MY + G + +  
Sbjct: 237 VDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 293

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            + ++I N DL+S+ + ++    +G   +A  +   M   GF P+  A SS+L   A+ +
Sbjct: 294 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVA 353

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G Q H   L+ G + ++C  N+LI +YSK G++  A   FD M   DV SWNS+IH
Sbjct: 354 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 413

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            H++    ++AL  F +M  +G+ PD  TF+ +L  C H G V+ GE  F +M+++Y  +
Sbjct: 414 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFT 473

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P   HYACM+++ GR G  DEA  MI   M FE   ++W  LL +C LH N+ +G+ AA 
Sbjct: 474 PAPSHYACMIDMLGRNGRFDEALRMI-NDMPFEPDALIWKTLLASCKLHRNLDIGKLAAD 532

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L EL   +  ++ L+  IY   G  +D  +V R + + G++
Sbjct: 533 RLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVK 574



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 192/358 (53%), Gaps = 19/358 (5%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           W S++SGY   G  E A+A++  M E GV P+ F     L ACA LG +R GE+VH  AV
Sbjct: 9   WTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAV 68

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           R GF  D ++ + L++MY++CG +  A+ VFDR+ + D++ Y S+++ +  +G    A +
Sbjct: 69  RAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAE 128

Query: 282 IFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR-GVE-WDLCIANSLIVVYSK 339
               M+  G  P+   +++IL     + +G Q+HG+++++ G+    +  + +LI  YS+
Sbjct: 129 ALIQMLKQGLKPNEHTMTTILTACPRV-LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSR 187

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSL 396
           +G+   A  +FD +  K+VVSW S++  + +D    EAL  F  M  +GV P+      +
Sbjct: 188 NGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIV 247

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L AC   GS+ +G +L    + K+ +   +     ++++YGR GL++E  +M+  K+E  
Sbjct: 248 LGAC---GSIGLGRQLHCSAI-KHDLITDIRVSNALLSMYGRTGLVEELEAML-NKIE-N 301

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLD 510
              V W   + A + +G    GE A   L ++  +    N + F  ++    +   LD
Sbjct: 302 PDLVSWTTAISANFQNG---FGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLD 356



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 223/451 (49%), Gaps = 25/451 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+        + L  C  L A+  G ++H L        +  I S L+ +Y+  G +
Sbjct: 33  VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 92

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD+M +     +   SLIS +   GE+E A     QM ++G++P++ T   +L 
Sbjct: 93  PAAKEVFDRMDSPDVVGY--TSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 150

Query: 203 ACAGLGLIRVGEKVHLDAV-RFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           AC  +    +G+++H   + + G      +   AL+D Y++ G+   A+ VFD +  K++
Sbjct: 151 ACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNV 206

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           +S+ SM+  YI  G L EA  +F  MI  G DP+  A+S +L     + +G Q+H   ++
Sbjct: 207 VSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIK 266

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
             +  D+ ++N+L+ +Y + G +++   + + +   D+VSW + I A+ ++    +A+  
Sbjct: 267 HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIAL 326

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             QM  +G  P+   F S+LS+CA + S+  G + F  +  K G    +     ++N+Y 
Sbjct: 327 LCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYS 385

Query: 438 RAGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPD 491
           + G +  A      ++ F+         W +L++    HG+         K+    ++PD
Sbjct: 386 KCGQMGSA------RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPD 439

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           +     +L+    ++G +++ E   R+++D+
Sbjct: 440 DSTFLGVLMGC-NHSGMVEEGELFFRLMIDQ 469



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 19/158 (12%)

Query: 353 MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MP+K+VV+W S++  ++++     AL  F  M   GV P+     + L ACA LG+++ G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG--ALLY 467
           E++ S+ V + G +      +C++ +Y R G +  A   + ++M+   SP V G  +L+ 
Sbjct: 61  EQVHSLAV-RAGFAGDAWIGSCLIEMYSRCGSLPAAKE-VFDRMD---SPDVVGYTSLIS 115

Query: 468 ACYLHGNVCMGETAAQKLFE-----LEPDNEHNFELLI 500
           A   +G     E AA+ L +     L+P NEH    ++
Sbjct: 116 AFCRNGEF---ELAAEALIQMLKQGLKP-NEHTMTTIL 149


>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 242/470 (51%), Gaps = 50/470 (10%)

Query: 99  ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL--YATFGLIDEAHQVFDQMSNRT 156
           E C  +K ++     H  + T  L  +    S+LL    +   G +  A ++F Q+ + T
Sbjct: 13  EKCRHMKQLKEA---HAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPT 69

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
                 N++I  +   G+  + I +Y QM E G+ PD +T P VLKACAGL    +GE  
Sbjct: 70  ICIC--NTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESA 127

Query: 217 HLDAVRFGFGFDGFVLNALVDM-------------------------------YAKCGDI 245
           H  +V+ GF FD FV N L+ M                               YAK GD+
Sbjct: 128 HGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDV 187

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
             AR +FD    KD   + S+++GY+ +    E   +FR M   G +PD   + SIL   
Sbjct: 188 ETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCAC 247

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A+   + IG  VH ++ + G    + ++  LI +Y+K G LD A  LFD M Q+D + WN
Sbjct: 248 AHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWN 307

Query: 363 SIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I   + + +   AL  F +ME+ GV PD +TF+++ +AC++ G      RL + M   
Sbjct: 308 AMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTV 367

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNV 475
           Y + P+ EHY C+V+L GRAGL+ EA  +I+ KM   +SP    + W ALL AC  HG  
Sbjct: 368 YNMEPKSEHYGCIVDLLGRAGLLKEAKELIL-KMPNSSSPTEQAIAWRALLSACCSHGQT 426

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + E AAQ+LF LE  +   + LL  +Y  AG+ D V R+ +M+ +RG++
Sbjct: 427 EVAEDAAQRLFHLE-HHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVD 475


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 149/482 (30%), Positives = 251/482 (52%), Gaps = 41/482 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYAT--- 138
           V  G+   + T AS +  C  L  + HG ++H   I    L  +  + + L+  YA    
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 139 -------FGLIDE-----------------AHQVFDQMSNRTAFA------FPWNSLISG 168
                  FG+I +                 +H+   ++ +   F         WN L++G
Sbjct: 414 VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           + + G+ + A+  + +M   G++P+  T    L AC  +  +++G+++H   +R      
Sbjct: 474 FTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELS 533

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V +AL+ MY+ C  +  A +VF  +  +D++ +NS+++     G  V A D+ R M L
Sbjct: 534 TGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 593

Query: 289 NGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345
           +  + + V + S L   S    LR G ++H +++R G++    I NSLI +Y + G + +
Sbjct: 594 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQK 653

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +  +FD MPQ+D+VSWN +I     H    +A+  F+     G+ P+H+TF +LLSAC+H
Sbjct: 654 SRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSH 713

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G ++ G + F +M  +Y + P VE YACMV+L  RAG  +E    I EKM FE +  VW
Sbjct: 714 SGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI-EKMPFEPNAAVW 772

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           G+LL AC +H N  + E AA+ LFELEP +  N+ L+  IY  AGR +D  ++  ++ +R
Sbjct: 773 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 832

Query: 523 GL 524
           G+
Sbjct: 833 GV 834



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 223/487 (45%), Gaps = 75/487 (15%)

Query: 21  GSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLE 80
            S N +++  R+      +R RIT FS         +L N        L ++D    D  
Sbjct: 36  ASTNTKTQNLRKLTN---ARQRITGFSGGGSVHRNGVLNNAAML----LSSMDLTNPD-- 86

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
                      E +AS+L+ C +L  +  G ++H  +  N +   + + S+LL +Y   G
Sbjct: 87  --------ECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTG 138

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            +++A ++FD+MS R  F+  W +++  Y  LG+YE+ I L++ M  EGV PD F FP+V
Sbjct: 139 CVEDARRMFDKMSERNVFS--WTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKV 196

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
            KAC+ L   RVG+ V+   +  GF  +  V  +++DM+ KCG +  AR  F+ I  KD+
Sbjct: 197 FKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV 256

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
             +N M++GY   G   +A      M L+G  PD V                    W   
Sbjct: 257 FMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT-------------------W--- 294

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-----QKDVVSWNSIIHAHSK---DH 372
                     N++I  Y++ G+ ++A   F  M      + +VVSW ++I    +   D 
Sbjct: 295 ----------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL  F +M  +GV P+ +T  S +SAC +L  ++ G  +    ++   +   +     +
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 433 VNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL- 488
           V+ Y +   ++ A   + MI      +   V W A+L    L G+    E A + L E+ 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIK-----QTDLVSWNAMLAGYALRGS---HEEAIELLSEMK 456

Query: 489 ----EPD 491
               EPD
Sbjct: 457 FQGIEPD 463


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 247/463 (53%), Gaps = 22/463 (4%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI-- 128
           A +++IQ L    + G+     T  ++L  C ++     G ++H  +   +  +++ +  
Sbjct: 199 AAEALIQML----KQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSVYS 250

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           S+ L+  Y+  G    A  VFD +  +   +  W S++  Y   G  E+A+ ++  M  E
Sbjct: 251 STALIDFYSRNGEFKLAKAVFDSLHCKNVVS--WCSMMQLYIRDGRLEEALQVFGDMISE 308

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV+P++F    VL AC  +GL   G ++H  A++     D  V NAL+ MY + G + + 
Sbjct: 309 GVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEEL 365

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANA 305
             + ++I N DL+S+ + ++    +G   +A  +   M   GF P+  A SS+L   A+ 
Sbjct: 366 EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADV 425

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           + L  G Q H   L+ G + ++C  N+LI +YSK G++  A   FD M   DV SWNS+I
Sbjct: 426 ASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLI 485

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
           H H++    ++AL  F +M  +G+ PD  TF+ +L  C H G V+ GE  F +M+++Y  
Sbjct: 486 HGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSF 545

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +P   HYACM+++ GR G  DEA  MI   M FE   ++W  LL +C LH N+ +G+ AA
Sbjct: 546 TPAPSHYACMIDMLGRNGRFDEALRMI-NDMPFEPDALIWKTLLASCKLHRNLDIGKLAA 604

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +L EL   +  ++ L+  IY   G  +D  +V R + + G++
Sbjct: 605 DRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVK 647



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 206/392 (52%), Gaps = 21/392 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +  K L      G + +A  +FD+M  +   A  W S++SGY   G  E A+A++  M E
Sbjct: 50  LECKRLNRLVKSGRLADALDLFDRMPRKNVVA--WTSVMSGYTRNGRPEAALAMFADMVE 107

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV P+ F     L ACA LG +R GE+VH  AVR GF  D ++ + L++MY++CG +  
Sbjct: 108 SGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPA 167

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A+ VFDR+ + D++ Y S+++ +  +G    A +    M+  G  P+   +++IL     
Sbjct: 168 AKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR 227

Query: 308 LRIGAQVHGWVLRR-GV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           + +G Q+HG+++++ G+    +  + +LI  YS++G+   A  +FD +  K+VVSW S++
Sbjct: 228 V-LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMM 286

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
             + +D    EAL  F  M  +GV P+      +L AC   GS+ +G +L    + K+ +
Sbjct: 287 QLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLGRQLHCSAI-KHDL 342

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
              +     ++++YGR GL++E  +M+  K+E     V W   + A + +G    GE A 
Sbjct: 343 ITDIRVSNALLSMYGRTGLVEELEAML-NKIE-NPDLVSWTTAISANFQNG---FGEKAI 397

Query: 483 QKLFELEPD----NEHNFELLIKIYGNAGRLD 510
             L ++  +    N + F  ++    +   LD
Sbjct: 398 ALLCQMHSEGFTPNGYAFSSVLSSCADVASLD 429



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 223/451 (49%), Gaps = 25/451 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+        + L  C  L A+  G ++H L        +  I S L+ +Y+  G +
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD+M +     +   SLIS +   GE+E A     QM ++G++P++ T   +L 
Sbjct: 166 PAAKEVFDRMDSPDVVGY--TSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 223

Query: 203 ACAGLGLIRVGEKVHLDAV-RFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           AC  +    +G+++H   + + G      +   AL+D Y++ G+   A+ VFD +  K++
Sbjct: 224 ACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNV 279

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           +S+ SM+  YI  G L EA  +F  MI  G DP+  A+S +L     + +G Q+H   ++
Sbjct: 280 VSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIK 339

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
             +  D+ ++N+L+ +Y + G +++   + + +   D+VSW + I A+ ++    +A+  
Sbjct: 340 HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIAL 399

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             QM  +G  P+   F S+LS+CA + S+  G + F  +  K G    +     ++N+Y 
Sbjct: 400 LCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYS 458

Query: 438 RAGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPD 491
           + G +  A      ++ F+         W +L++    HG+         K+    ++PD
Sbjct: 459 KCGQMGSA------RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPD 512

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           +     +L+    ++G +++ E   R+++D+
Sbjct: 513 DSTFLGVLMGC-NHSGMVEEGELFFRLMIDQ 542


>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
 gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
          Length = 495

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 220/415 (53%), Gaps = 13/415 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     TF S+L+ C   +AVE G  +HRL+    L     + + L+ +Y     + 
Sbjct: 69  EEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLI 128

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA QVFD +  +      W+++IS YA+LG   +AI L+  M  +GV P++     +L A
Sbjct: 129 EARQVFDGIVEKDVV--TWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGA 186

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+  G +  G+  H   V  GFG D    N L+ MY KCGD+  A+ VF  +  +DLIS+
Sbjct: 187 CSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISW 246

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR--- 320
           ++ML     HG   +AF  FR M L G  PD V   S+L   SLL  GA V G V+    
Sbjct: 247 SAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLL--GALVEGHVIHTRI 304

Query: 321 --RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
              G +  + I NSLI +Y K G L  A  +FD M  ++V++W ++I A   H +  EAL
Sbjct: 305 RAEGFQSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEAL 364

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+ME+ GV PD + F+S++ +C+H G V+ G   F  MVE    +P VEH+  M++L
Sbjct: 365 ELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDL 424

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
            GR+G ++EA  ++ E M  E   V W  LL AC  H +       A  +  L P
Sbjct: 425 LGRSGKLNEAEELM-EFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGP 478



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 203/354 (57%), Gaps = 17/354 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + LL +Y   G ++EA + F+ M++R   +  W+++++ YA+ G+++ A+ L+ +MEE
Sbjct: 12  VGNSLLNMYGKCGGVEEAREFFESMTHRNVIS--WSTMVAAYAQRGDHDQALVLFQKMEE 69

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EGVEP++ TF  VL ACA    +  GE +H    R        V  ALV MY KC  +++
Sbjct: 70  EGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIE 129

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR VFD I  KD++++++M++ Y   G + EA  +F  M L+G  P+ + + SIL   ++
Sbjct: 130 ARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSS 189

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           A  L  G   H  V+  G   D+   N+LI +Y K G L  A  +F  M ++D++SW+++
Sbjct: 190 AGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAM 249

Query: 365 I-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVE 418
           +     H H KD  A ++F +M+ +GV PD++TFVSLL AC+ LG++  G  + + +  E
Sbjct: 250 LAVIAEHGHCKD--AFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAE 307

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            +     +E+   ++++YG+ G +  A   I ++M    + + W  ++ AC  H
Sbjct: 308 GFQSVMYIENS--LIDMYGKCGSLQAARE-IFDRMSHR-NVITWTTMITACVQH 357



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 140/253 (55%), Gaps = 13/253 (5%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV N+L++MY KCG + +AR  F+ + ++++IS+++M+  Y   G   +A  +F+ M   
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G +P+ V   S+L   ANA  +  G  +H  V R+ ++  L +  +L+ +Y K  +L +A
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIEA 130

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +FD + +KDVV+W+++I A+++     EA+  F  M  DGV P+ +  +S+L AC+  
Sbjct: 131 RQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSA 190

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVV 461
           G++  G+    ++V   G    V     ++ +YG+ G +  A ++   +E+ +     + 
Sbjct: 191 GALAEGKMTHELVV-ICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDL----IS 245

Query: 462 WGALLYACYLHGN 474
           W A+L     HG+
Sbjct: 246 WSAMLAVIAEHGH 258


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 142/425 (33%), Positives = 241/425 (56%), Gaps = 10/425 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S L+ C  L   ++G ++H L     L  N      L  +YA  G +D A +VF+Q+ 
Sbjct: 270 FGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIE 329

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
                +  WN +I+G A  G  ++A++++ +M   G  PD  +   +L A      +  G
Sbjct: 330 RPDTAS--WNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQG 387

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIH 272
            ++H   ++ GF  D  V N+L+ MY  C D+     +F+   NK D +S+N++LT  + 
Sbjct: 388 MQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQ 447

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCI 329
           H   VE   +F+ M+++  +PD + + ++L      S L++G+QVH +  + G+  +  I
Sbjct: 448 HEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFI 507

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
            N LI +Y+K G L QA  +FD M   DVVSW+++I  +++     EALI F +M+  G+
Sbjct: 508 KNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGI 567

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+H+TFV +L+AC+H+G V+ G +L+++M  ++GISP  EH +C+V+L  RAG ++EA 
Sbjct: 568 EPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAE 627

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I ++M+ E   VVW  LL AC   GNV + + AA+ + +++P N     LL  ++ ++
Sbjct: 628 RFI-DEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASS 686

Query: 507 GRLDD 511
           G  +D
Sbjct: 687 GNWED 691



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 222/449 (49%), Gaps = 24/449 (5%)

Query: 38  ISRNRITTFSSYPKSSPTPLLTN-------QKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           +S ++I   SS   +  T  L N       + +F +  L+A D   ++      +   ++
Sbjct: 10  VSNSQIPATSSVVSTIKTEELMNDHINSLCRNSFYREALEAFDFAQKN------SSFKIR 63

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
             T+ SL+  C   +++  G K+H  I  +  + +  +++ +L +Y   G + +A +VFD
Sbjct: 64  LRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFD 123

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            M  R   ++   S+I+GY++ G+  +AI LY +M +  + PDQF F  ++KACA  G +
Sbjct: 124 FMPERNLVSY--TSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDV 181

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            +G+++H   ++          NAL+ MY +   +  A  VF  I  KDLIS++S++ G+
Sbjct: 182 VLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGF 241

Query: 271 IHHGLLVEAFDIFRGMILNG-FDPDPVAI-SSILANASLLR--IGAQVHGWVLRRGVEWD 326
              G   EA    + M+  G F P+     SS+ A +SLLR   G+Q+HG  ++  +  +
Sbjct: 242 SQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGN 301

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
                SL  +Y++ G LD A  +F+ + + D  SWN II   + +    EA+  F +M  
Sbjct: 302 AIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRN 361

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G +PD ++  SLL A     ++  G ++ S ++ K G    +     ++ +Y     + 
Sbjct: 362 SGFIPDAISLRSLLCAQTKPMALCQGMQIHSFII-KCGFLADLSVCNSLLTMYTFCSDLY 420

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLH 472
             +++  E    +A  V W A+L AC  H
Sbjct: 421 CCFNLF-EDFRNKADSVSWNAILTACLQH 448


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 240/447 (53%), Gaps = 12/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF  L     +   V     +H  I  +   + KG+   ++ +Y   G + +A
Sbjct: 358 GVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDA 417

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
              FD M      +  WN+L+SG+      E  + ++ ++  EGV  +++T+  +L+ C 
Sbjct: 418 ILAFDLMQGPDIAS--WNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCT 475

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  +R G +VH   ++ GF  D  V   L+DMY + G    AR VFDR+  +D+ S+  
Sbjct: 476 SLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTV 535

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRG 322
           +++ Y       +A + FR M+     P+   ++   S+ ++ + L  G Q+H + ++ G
Sbjct: 536 VMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSG 595

Query: 323 VEWDLCIANSLIV-VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
             W+  + +S +V +Y K G L  A  LFD     D+V WN+II     H   ++AL  F
Sbjct: 596 --WNSSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAF 653

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M  +G +PD +TFV +LSAC+H G +  G R F ++   YGI+P +EHYACMV++  +
Sbjct: 654 QEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAK 713

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + EA S+I E M       +W  +L AC +HGN+ + E AA+KLFE +PD+  +  L
Sbjct: 714 AGKLAEAESLINE-MPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCIL 772

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  IY +  R +DV ++  MLVDRG++
Sbjct: 773 LSNIYADLKRWNDVAKLRSMLVDRGVK 799



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 184/396 (46%), Gaps = 18/396 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           +  ++A+ L+ C   +A+  G  LH  +  +  R +  +   LL +Y   G + +A  VF
Sbjct: 59  ELRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVF 118

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D M +R   A  W +++S     G+   A+ L+ +M EEGV P+ F     LKAC     
Sbjct: 119 DGMPHRDVVA--WTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSD 176

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI-VKARTVFDRIGNKDLISYNSMLT 268
           +    +VH  AV+    FD +V ++LV+ Y  CG++ V  R + D     D +S+N++L 
Sbjct: 177 LGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSD-VSWNALLN 235

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEW 325
            Y   G   +   +F  ++ +G +     + ++L       L + G  VHG V++RG+E 
Sbjct: 236 EYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLET 295

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D  + N LI +YSK    + A  +F  + + DVV  + +I     H    EA   F QM 
Sbjct: 296 DRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMS 355

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             GV P+  TFV L    +  G V +   + + +V K G S        +V +Y + G +
Sbjct: 356 DMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIV-KSGFSRTKGVCDAIVGMYVKTGAV 414

Query: 443 DEAYSMIVEKMEFEASPVV--WGALLYACYLHGNVC 476
            +A    +   +    P +  W  LL   Y  GN C
Sbjct: 415 QDA----ILAFDLMQGPDIASWNTLLSGFY-SGNNC 445



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 164/324 (50%), Gaps = 9/324 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +SS L+  Y + G +D A +       R+  +  WN+L++ YA  G+Y   + ++ ++ E
Sbjct: 198 VSSSLVEAYVSCGEVDVAERALLDSPVRSDVS--WNALLNEYARDGDYAKVMLVFDKLVE 255

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G E  ++T P VLK C  LGL + G+ VH   ++ G   D  + N L++MY+KC     
Sbjct: 256 SGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAED 315

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILAN 304
           A  VF RI   D++  + M++ +  H +  EAFDIF  M   G  P+    V ++ + + 
Sbjct: 316 AYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASR 375

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              + +   +H  +++ G      + ++++ +Y K G +  A   FD M   D+ SWN++
Sbjct: 376 TGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTL 435

Query: 365 I---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           +   ++ +     L  F+++  +GVL +  T+V +L  C  L  ++ G ++ + ++ K G
Sbjct: 436 LSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVL-KSG 494

Query: 422 ISPRVEHYACMVNLYGRAGLIDEA 445
                +    ++++Y +AG    A
Sbjct: 495 FQGDYDVSKMLLDMYVQAGCFTNA 518


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 256/477 (53%), Gaps = 47/477 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++A + +   +   ++ G + H  I  + L+ N  +++K++ +YA+ G +D A  VFD++
Sbjct: 79  SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRI 138

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDA---IALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
            N ++  +  NS+I  Y   G        +  Y +M   G+  D FT P VLK+CA L  
Sbjct: 139 DNPSSLLY--NSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSR 196

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           + +G  VH   +R G   D +V  +L+DMY KCG I  AR +FD++  +D+ S+N+++ G
Sbjct: 197 VCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAG 256

Query: 270 YIHHGLLVEAFDIFR---------------GMILNGF------------------DPDPV 296
           Y+  G +  A D+F                G   NGF                   P+ V
Sbjct: 257 YMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWV 316

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            I S+L   A ++ L  G ++H +    G+  +  +  +L  +Y+K   L +A   FD +
Sbjct: 317 TIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMI 376

Query: 354 PQ--KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            Q  K++++WN++I A   H    EA+  FE M R GV PD +TF+ LLS C+H G +  
Sbjct: 377 AQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDA 436

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G   F+ M   + + PRVEHYAC+V+L GRAG + EA  +I  +M  +A P VWGALL A
Sbjct: 437 GLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELI-SQMPMQAGPSVWGALLAA 495

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C  H N+ + E AA++LF LEPDN  N+ LL  +Y  AG  ++V+++  +L  +G++
Sbjct: 496 CRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMK 552


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 148/401 (36%), Positives = 220/401 (54%), Gaps = 11/401 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V  G+     T +S+L  C  L      + +H       L     + + L+ +Y   G++
Sbjct: 160 VGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGML 219

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            EA  VF  M+ R      WNS+IS Y + G+   A+ L+  M + GV PD  T   +  
Sbjct: 220 VEARWVFGGMALRDLVT--WNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLAS 277

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           A A  G  R  + VH    R G+     +  NA+VDMYAK   I  A+ VFD + ++D++
Sbjct: 278 AVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVV 337

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           S+N+++TGY+ +GL  EA  I+  M  + G  P      SIL   +N   L+ G ++H  
Sbjct: 338 SWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHAL 397

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            ++ G+  D+ ++  LI +Y+K GKL +A  LF+HMP++    WN+II     H    +A
Sbjct: 398 SIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKA 457

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F QM+++G+ PD++TFVSLL+AC+H G V  G   F +M   YGI P  +HYACMV+
Sbjct: 458 LNLFSQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVD 517

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           + GRAG +DEA+  I + M  +    VWGALL AC +HGNV
Sbjct: 518 MLGRAGQLDEAFEFI-QGMPIKPDSAVWGALLGACRIHGNV 557



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 221/405 (54%), Gaps = 24/405 (5%)

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
            LL  N   S  L+  Y  FG + EA++VFD+M  R   A  WN+++SG        DA+
Sbjct: 96  GLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPA--WNAMLSGLCRNARAVDAV 153

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           AL+ +M  EGV  D  T   VL  C  LG   +   +H+ AV+ G   + FV NAL+D+Y
Sbjct: 154 ALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVY 213

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---V 296
            K G +V+AR VF  +  +DL+++NS+++ Y   G +  A ++F GM+ +G  PD    V
Sbjct: 214 GKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLV 273

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +++S +A     R    VH +V RRG +  D+   N+++ +Y+K  K+D A  +FD++P 
Sbjct: 274 SLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPD 333

Query: 356 KDVVSWNSIIHAHSKD---HEAL-IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +DVVSWN++I  + ++   +EA+ IY +    +G+ P   TFVS+L A ++LG+++ G R
Sbjct: 334 RDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMR 393

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           + ++ + K G++  V    C+++LY + G + EA  +          P  W A++    +
Sbjct: 394 MHALSI-KTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGP--WNAIIAGLGV 450

Query: 472 HGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLD 510
           HG+       A  LF       ++PDN   F  L+    +AG +D
Sbjct: 451 HGH----GAKALNLFSQMQQEGIKPDNV-TFVSLLAACSHAGLVD 490



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 169/356 (47%), Gaps = 34/356 (9%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKA 248
           + PD FTFP +++A  G        + H  A+R G      F   +LV  Y + G + +A
Sbjct: 65  LRPDSFTFPPLVRAAPGPA---SAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
             VFD +  +D+ ++N+ML+G   +   V+A  +F  M+  G   D V +SS+L    LL
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLL 181

Query: 309 ---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
               +   +H + ++RG+  +L + N+LI VY K G L +A W+F  M  +D+V+WNSII
Sbjct: 182 GDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSII 241

Query: 366 HAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG- 421
            A+    K   A+  F  M + GV PD LT VSL SA A  G  + G +     V + G 
Sbjct: 242 SAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDER-GAKSVHCYVRRRGW 300

Query: 422 -ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVC 476
            +   +   A +V++Y +   ID A      +M F+  P    V W  L+   Y+   + 
Sbjct: 301 DVGDIIAGNA-VVDMYAKLSKIDAA------QMVFDNLPDRDVVSWNTLITG-YMQNGL- 351

Query: 477 MGETAAQKLFELEPDNE------HNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
                A +++    ++E        F  ++  Y N G L    R+  + +  GL  
Sbjct: 352 --SNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNL 405


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 148/423 (34%), Positives = 234/423 (55%), Gaps = 11/423 (2%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH L     L     + + L+  Y+  G + EA ++F  +S        WNS++  Y +
Sbjct: 159 QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRD-EVSWNSMVVAYMQ 217

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
             E   A+ LY +M   G+  D FT   VL A   +  +  G + H   ++ G+  +  V
Sbjct: 218 HREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHV 277

Query: 232 LNALVDMYAKCGD-IVKARTVFDRIGNKDLISYNSMLTGY-IHHGLLVEAFDIFRGMILN 289
            + L+D+Y+KCG  ++  R VFD I N DL+ +N+M++GY ++  L  EA + FR +   
Sbjct: 278 GSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGV 337

Query: 290 GFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVVYSKDGKLDQ 345
           G  PD    V + S  +N S    G QVHG  L+  +  + + + N+LI +YSK G L  
Sbjct: 338 GHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRD 397

Query: 346 ACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  LFD MP+ + VS+NS+I     H    ++L  F++M      P ++TF+S+L+ACAH
Sbjct: 398 AKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAH 457

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V+ G+  F++M +K+GI P   H++CM++L GRAG + EA  +I E + F+     W
Sbjct: 458 TGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLI-ETIPFDPGFFXW 516

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
            ALL AC +HGNV +   AA +L +L+P N   + +L  IY + GRL D   V +++ DR
Sbjct: 517 SALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDR 576

Query: 523 GLE 525
           G++
Sbjct: 577 GVK 579



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 235/512 (45%), Gaps = 88/512 (17%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRL-----IPTN---------LLRKNKGISS-------- 130
           +F   L+TC   + +  G  LH L     +PT+         L  K + +S+        
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 131 ---------KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL 181
                     L+  YA    ++ AHQ+FD+M    + ++  N+LI+ YA  G+ + A  L
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSY--NTLIAAYARRGDTQPAFQL 127

Query: 182 YFQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVL--NALVDM 238
           + +M E  ++ D FT   ++ AC   +GLIR      L A+    G D +V   NAL+  
Sbjct: 128 FLEMREAFLDMDGFTLSGIITACGINVGLIR-----QLHALSVVTGLDSYVSVGNALITS 182

Query: 239 YAKCGDIVKARTVFDRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
           Y+K G + +AR +F  +  ++D +S+NSM+  Y+ H    +A +++  M + G   D   
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 298 ISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW-LFDHM 353
           ++S+L    N   L  G Q H  +++ G   +  + + LI +YSK G     C  +FD +
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI 302

Query: 354 PQKDVVSWNSIIHAHS----KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
              D+V WN++I  +S       EAL  F Q++  G  PD  + V ++SAC+++ S   G
Sbjct: 303 SNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-------------------- 449
            ++  + ++    S R+     ++ +Y + G + +A ++                     
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 450 -------------VEKMEFEASPVVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNE 493
                        + +M+F  + + + ++L AC   G V  G+      ++ F +EP+  
Sbjct: 423 HGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482

Query: 494 HNFELLIKIYGNAGRLDDVER-VERMLVDRGL 524
           H F  +I + G AG+L + ER +E +  D G 
Sbjct: 483 H-FSCMIDLLGRAGKLSEAERLIETIPFDPGF 513


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 254/450 (56%), Gaps = 21/450 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           T ++L +   +L A+  G  +H + I T  +  +  +++ ++ +Y   G  DE+ +VFD+
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRTGFV-SDTVVANSIMSMYCKCGNFDESRKVFDE 184

Query: 152 MSNRTAFAFPWNSLISGYAELGEY---EDAIALYFQMEEEGVEPDQFTFPRVLKACAG-L 207
           M+ R + +  WN LI+GYA  G     E+      QM+ + V PD +T   +L  C G +
Sbjct: 185 MTIRNSGS--WNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDM 242

Query: 208 GLIRVGEKVHLDAVR----FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           G    G ++H   V+     G   D  +   L+DMY++   +V  R VFDR+  +++ S+
Sbjct: 243 GKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSW 302

Query: 264 NSMLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
            +M+ GY+ +G   EA  +FR M +++G +P+ V++ S+L   ++ S L  G Q+HG+ +
Sbjct: 303 TAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAV 362

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHMPQKDVVSWNSIIHA---HSKDHEAL 375
           R+ +  ++ + N+LI +YSK G LD A  +F D    KD +SW+S+I     H K  EA+
Sbjct: 363 RKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAI 422

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
           + +++M + G+ PD +T V +LSAC   G V  G  ++S ++  YGI P +E  AC+V++
Sbjct: 423 LLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDM 482

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
            GRAG +D A   I + +  E  P VWGAL+    +HG++ M E A + L +LEP N  N
Sbjct: 483 LGRAGQLDRALDFI-KAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSN 541

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +  +  +Y ++ R D V  V RM+ D+ L 
Sbjct: 542 YVSISNLYASSRRWDAVAEVRRMMKDKRLR 571



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 188/375 (50%), Gaps = 19/375 (5%)

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H  I +  L +N  +++KL+  YA       +  VFD + ++  F   WNSLI+G  +  
Sbjct: 46  HSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFL--WNSLINGCVKNR 103

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            Y +A  L+ QM    V PD FT   + K  + LG +  G+ +H  ++R GF  D  V N
Sbjct: 104 LYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVAN 163

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG---LLVEAFDIFRGMILNG 290
           +++ MY KCG+  ++R VFD +  ++  S+N ++ GY   G      E ++  + M ++ 
Sbjct: 164 SIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDE 223

Query: 291 FDPDPVAISSIL----ANASLLRIGAQVHGWVLRR----GVEWDLCIANSLIVVYSKDGK 342
             PD   ISS+L     +      G ++H ++++     G++ D+ +   LI +YS+  K
Sbjct: 224 VRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK 283

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER-DGVLPDHLTFVSLLS 398
           +     +FD M  ++V SW ++I+ + ++    EAL  F  M+  DGV P+ ++ VS+L 
Sbjct: 284 VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLP 343

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+    +  G ++    V K  ++  V     ++++Y + G +D A   + E       
Sbjct: 344 ACSSFSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSA-RRVFEDDSLCKD 401

Query: 459 PVVWGALLYACYLHG 473
            + W +++    LHG
Sbjct: 402 AISWSSMISGYGLHG 416



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +++  + H   +  G   + F+   L+  YA C     +R VFD + +K++  +NS++ G
Sbjct: 39  LKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWD 326
            + + L  EAF +F  M  +   PD   +S++   +S L     G  +HG  +R G   D
Sbjct: 99  CVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSD 158

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD------HEALIYFEQ 380
             +ANS++ +Y K G  D++  +FD M  ++  SWN +I  ++         E   + +Q
Sbjct: 159 TVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218

Query: 381 MERDGVLPDHLTFVSLLSAC-AHLGSVKVGERLFSVMVEK---YGISPRVEHYACMVNLY 436
           M+ D V PD  T  SLL  C   +G    G  L   +V+     G+   V    C++++Y
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY 278

Query: 437 GRAGLI 442
            R+  +
Sbjct: 279 SRSNKV 284



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           S+ +D++  V +G+     +  S+L  C     +  G ++H       L     + + L+
Sbjct: 320 SLFRDMQ--VIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 377

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            +Y+  G +D A +VF+  S     A  W+S+ISGY   G+ ++AI LY +M + G+ PD
Sbjct: 378 DMYSKCGSLDSARRVFEDDS-LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 436

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKA 248
             T   +L AC   GL+  G  ++   +  +G      +   +VDM  + G + +A
Sbjct: 437 MITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRA 492


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 253/467 (54%), Gaps = 24/467 (5%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG-- 127
           +A+D+  +  ES V+    V   T  S+L  C +L  ++ G  +H  I   L R+  G  
Sbjct: 287 EAIDAFKKMQESEVE----VNAVTMISVLCCCARLGWLKEGKSVHCFI---LRREMDGAD 339

Query: 128 --ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
             +   L+  YA    I    ++   + N +  +  WN+LIS YA  G  E+A+ L+  M
Sbjct: 340 LDLGPALMDFYAACWKISSCEKLLCLIGNSSVVS--WNTLISIYAREGLNEEAMVLFVCM 397

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
            E+G+ PD F+    + ACAG   +R G+++H    + GF  D FV N+L+DMY+KCG +
Sbjct: 398 LEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFA-DEFVQNSLMDMYSKCGFV 456

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
             A T+FD+I  K ++++N M+ G+  +G+ VEA  +F  M  N  D + V   S +   
Sbjct: 457 DLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQAC 516

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +N+  L  G  +H  ++  GV+ DL I  +L+ +Y+K G L  A  +F+ MP+K VVSW+
Sbjct: 517 SNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWS 576

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I A   H +   A   F +M    + P+ +TF+++LSAC H GSV+ G+  F+ M   
Sbjct: 577 AMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSM-RD 635

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-FEASPVVWGALLYACYLHGNVCMG 478
           YGI P  EH+A +V+L  RAG ID AY +I    +  +AS  +WGALL  C +HG + + 
Sbjct: 636 YGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDAS--IWGALLNGCRIHGRMDLI 693

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
               ++L E+  ++   + LL  IY   G   +  +V   +   GL+
Sbjct: 694 HNIHKELREIRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLK 740



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 209/424 (49%), Gaps = 14/424 (3%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G K+H  I    L  +  I + LL +Y   G + +A +VFD++  R   +  W+S+++ Y
Sbjct: 121 GRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVS--WSSVVACY 178

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
            E G   + + +   M  EGV PD  T   V +AC  +G +R+ + VH   +R     D 
Sbjct: 179 VENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDA 238

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            + N+L+ MY +C  +  A+ +F+ + +     + SM++    +G   EA D F+ M  +
Sbjct: 239 SLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQES 298

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW-DLCIANSLIVVYSKDGKLDQ 345
             + + V + S+L   A    L+ G  VH ++LRR ++  DL +  +L+  Y+   K+  
Sbjct: 299 EVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISS 358

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
              L   +    VVSWN++I  +++   + EA++ F  M   G++PD  +  S +SACA 
Sbjct: 359 CEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAG 418

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
             SV+ G+++    V K G +      + M ++Y + G +D AY+ I +K+ +E S V W
Sbjct: 419 ASSVRFGQQIHG-HVTKRGFADEFVQNSLM-DMYSKCGFVDLAYT-IFDKI-WEKSIVTW 474

Query: 463 GALLYACYLHG-NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
             ++     +G +V   +   +  F     NE  F   I+   N+G L   + +   LV 
Sbjct: 475 NCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVV 534

Query: 522 RGLE 525
            G++
Sbjct: 535 SGVQ 538



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 171/335 (51%), Gaps = 14/335 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  L  +C  L+++    +LH  +    L  +   S+KLL  YA  G +  +  VF+   
Sbjct: 4   YMPLFRSCSTLRSLS---QLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHP 60

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ---FTFPRVLKACAGLGLI 210
           +  +F F    LI  Y     ++  ++LY    ++G    Q   F +P V+KA + +G +
Sbjct: 61  SPDSFMF--GVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGL 118

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
            VG KVH   V+ G G D  +  +L+ MY + G +  AR VFD I  +DL+S++S++  Y
Sbjct: 119 VVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACY 178

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSI---LANASLLRIGAQVHGWVLRRGVEWDL 327
           + +G   E  ++ R M+  G  PD V + S+         LR+   VHG+V+R+ +  D 
Sbjct: 179 VENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDA 238

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
            + NSLIV+Y +   L  A  +F+ +       W S+I + +++    EA+  F++M+  
Sbjct: 239 SLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQES 298

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
            V  + +T +S+L  CA LG +K G+ +   ++ +
Sbjct: 299 EVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRR 333


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 238/445 (53%), Gaps = 15/445 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  SL+  C +L  +  G  +H  +  N +  N  +++ LL +Y   G I +A  VFD+ 
Sbjct: 237 TVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEF 296

Query: 153 SNRTA-----FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
           S  T        F W ++I GY + G  + A+ L+   +   + P+  T   +L ACA L
Sbjct: 297 SVSTCGGGDDLVF-WTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQL 355

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
             I +G+ +H+  V++G   D  + N+LVDMYAKCG I  A  VF    +KD++S+NS++
Sbjct: 356 ENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVI 414

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-V 323
           +GY   G   EA D+F  M +  F PD V +  +L   A+    +IG  +HG+ L+ G V
Sbjct: 415 SGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLV 474

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQ 380
              + +  +L+  Y+K G    A  +FD M +K+ V+W ++I       +   +L  F  
Sbjct: 475 SSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRD 534

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M ++ ++P+ + F +LL+AC+H G V+ G  +F  M ++    P ++HYACMV+L  RAG
Sbjct: 535 MLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAG 594

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            + EA   I +KM  +    V+GA L+ C LH N   GE A +++ EL PD    + L+ 
Sbjct: 595 NLQEALDFI-DKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELHPDQACYYVLIS 653

Query: 501 KIYGNAGRLDDVERVERMLVDRGLE 525
            +Y + GR   V+ V  M+  RGL 
Sbjct: 654 NLYASDGRWGMVKEVREMIKQRGLN 678



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 228/436 (52%), Gaps = 29/436 (6%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS---SKLLRLYATFGLIDEAHQVFD 150
           F+ LL+T  QL+ +    KLH     N+L+ N   S   + L+  Y+  G + +A +VFD
Sbjct: 138 FSILLKTASQLRDIVLTTKLH----CNILKSNAADSFVLTSLVDAYSKCGKLRDARKVFD 193

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           ++ +R+  +  W S+I  Y +    E+ + L+ +M E  ++ + FT   ++ AC  LG +
Sbjct: 194 EIPDRSVVS--WTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCL 251

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI------GNKDLISYN 264
             G+ VH   ++ G   + ++  +L++MY KCGDI  AR+VFD        G  DL+ + 
Sbjct: 252 HQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWT 311

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRR 321
           +M+ GY   G    A ++F         P+ V ++S+L+  + L    +G  +H  V++ 
Sbjct: 312 AMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKY 371

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ D  + NSL+ +Y+K G +  A ++F     KDVVSWNS+I  +++    +EAL  F
Sbjct: 372 GLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLF 430

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG-ISPRVEHYACMVNLYG 437
            +M  +  LPD +T V +LSACA +G+ ++G  L    + KYG +S  +     ++N Y 
Sbjct: 431 NRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFAL-KYGLVSSSIYVGTALLNFYA 489

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF--ELEPDNEHN 495
           + G    A  M+ + M  E + V W A++  C + G+        + +   EL P NE  
Sbjct: 490 KCGDATSA-RMVFDGMG-EKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVP-NEVV 546

Query: 496 FELLIKIYGNAGRLDD 511
           F  L+    ++G +++
Sbjct: 547 FTTLLAACSHSGMVEE 562



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 177/351 (50%), Gaps = 22/351 (6%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE- 188
           + L+ LYA+FG +  A  +F ++ + T  +F    LI  +  L +    +  ++ +    
Sbjct: 72  TTLISLYASFGFLRHARTLFHRLPSPTHHSF---KLIIRWHFLNDVHSHVVSFYNLARTT 128

Query: 189 -GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G   D   F  +LK  + L  I +  K+H + ++     D FVL +LVD Y+KCG +  
Sbjct: 129 LGSFNDLVVFSILLKTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRD 187

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS- 306
           AR VFD I ++ ++S+ SM+  Y+ +    E   +F  M     D +   + S++   + 
Sbjct: 188 ARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTK 247

Query: 307 --LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK------DV 358
              L  G  VHG+V++ G+E +  +A SL+ +Y K G +  A  +FD           D+
Sbjct: 248 LGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDL 307

Query: 359 VSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           V W ++I  +++      AL  F   +   +LP+ +T  SLLSACA L ++ +G +L  V
Sbjct: 308 VFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMG-KLLHV 366

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +V KYG+       + +V++Y + GLI +A+ +    ++ +   V W +++
Sbjct: 367 LVVKYGLDDTSLRNS-LVDMYAKCGLIPDAHYVFATTVDKDV--VSWNSVI 414


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 246/462 (53%), Gaps = 20/462 (4%)

Query: 71  ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE-HGIKLHRLIPTNLLRKNKGIS 129
           A +++IQ L    + G+     T  ++L  C ++   + HG  + ++    L  ++   S
Sbjct: 199 AAEALIQML----KQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKI---GLRSQSVYSS 251

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y+  G    A  VFD +  +   +  W S++  Y   G  E+A+ ++  M  EG
Sbjct: 252 TALIDFYSRNGEFKLAKAVFDSLHCKNVVS--WCSMMQLYIRDGRLEEALQVFGDMISEG 309

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V+P++F    VL AC  +GL   G ++H  A++     D  V NAL+ MY + G + +  
Sbjct: 310 VDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 366

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANAS 306
            + ++I N DL+S+ + ++    +G   +A  +   M   GF P+  A SS+L   A+ +
Sbjct: 367 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVA 426

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            L  G Q H   L+ G + ++C  N+LI +YSK G++  A   FD M   DV SWNS+IH
Sbjct: 427 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 486

Query: 367 AHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
            H++    ++AL  F +M  +G+ PD  TF+ +L  C H G V+ GE  F +M+++Y  +
Sbjct: 487 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFT 546

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P   HYACM+++ GR G  DEA  MI   M FE   ++W  LL +C LH N+ +G+ AA 
Sbjct: 547 PAPSHYACMIDMLGRNGRFDEALRMI-NDMPFEPDALIWKTLLASCKLHRNLDIGKLAAD 605

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L EL   +  ++ L+  IY   G  +D  +V R + + G++
Sbjct: 606 RLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVK 647



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 206/392 (52%), Gaps = 21/392 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +  K L      G + +A  +FD+M  +   A  W S++SGY   G  E A+A++  M E
Sbjct: 50  LECKRLNRLVKSGRLADALDLFDRMPRKNVVA--WTSVMSGYTRNGRPEAALAMFADMVE 107

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            GV P+ F     L ACA LG +R GE+VH  AVR GF  D ++ + L++MY++CG +  
Sbjct: 108 SGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPA 167

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A+ VFDR+ + D++ Y S+++ +  +G    A +    M+  G  P+   +++IL     
Sbjct: 168 AKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR 227

Query: 308 LRIGAQVHGWVLRR-GVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           + +G Q+HG+++++ G+    +  + +LI  YS++G+   A  +FD +  K+VVSW S++
Sbjct: 228 V-LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMM 286

Query: 366 HAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
             + +D    EAL  F  M  +GV P+      +L AC   GS+ +G +L    + K+ +
Sbjct: 287 QLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLGRQLHCSAI-KHDL 342

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
              +     ++++YGR GL++E  +M+  K+E     V W   + A + +G    GE A 
Sbjct: 343 ITDIRVSNALLSMYGRTGLVEELEAML-NKIE-NPDLVSWTTAISANFQNG---FGEKAI 397

Query: 483 QKLFELEPD----NEHNFELLIKIYGNAGRLD 510
             L ++  +    N + F  ++    +   LD
Sbjct: 398 ALLCQMHSEGFTPNGYAFSSVLSSCADVASLD 429



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 223/451 (49%), Gaps = 25/451 (5%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++G+        + L  C  L A+  G ++H L        +  I S L+ +Y+  G +
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD+M +     +   SLIS +   GE+E A     QM ++G++P++ T   +L 
Sbjct: 166 PAAKEVFDRMDSPDVVGY--TSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 223

Query: 203 ACAGLGLIRVGEKVHLDAV-RFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           AC  +    +G+++H   + + G      +   AL+D Y++ G+   A+ VFD +  K++
Sbjct: 224 ACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNV 279

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           +S+ SM+  YI  G L EA  +F  MI  G DP+  A+S +L     + +G Q+H   ++
Sbjct: 280 VSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIK 339

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
             +  D+ ++N+L+ +Y + G +++   + + +   D+VSW + I A+ ++    +A+  
Sbjct: 340 HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIAL 399

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
             QM  +G  P+   F S+LS+CA + S+  G + F  +  K G    +     ++N+Y 
Sbjct: 400 LCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYS 458

Query: 438 RAGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPD 491
           + G +  A      ++ F+         W +L++    HG+         K+    ++PD
Sbjct: 459 KCGQMGSA------RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPD 512

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           +     +L+    ++G +++ E   R+++D+
Sbjct: 513 DSTFLGVLMGC-NHSGMVEEGELFFRLMIDQ 542


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 237/449 (52%), Gaps = 16/449 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G+     T  S+L  C ++     G ++H  +   +  ++   S+ L+  Y+ +G  
Sbjct: 203 MRQGLQPNEHTMTSMLAECPRMI----GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDF 258

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A  VF+ + ++   +  W S++      G  EDA+ ++ +M  E VEP++F F   L 
Sbjct: 259 DMAETVFENLDSKNVVS--WCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALG 316

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC   G + +G ++H  A++     D  V NAL+ MY + G + +   V  +I N DL+S
Sbjct: 317 AC---GSVCLGRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVS 373

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + + ++    +G   +A  +   M   GF P+  A SS L   A+ +LL  G Q+H   L
Sbjct: 374 WTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLAL 433

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + G ++ +C  N+LI +YSK G++  A   FD M   DV+SWNS+IH    H   +  L 
Sbjct: 434 KLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLE 493

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F +M   G  PD  TF+++L  C H G VK GE  F +M ++YG++P   HYACM+++ 
Sbjct: 494 AFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDML 553

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR G  DEA  MI + M FE   ++W  LL +C LH N+ +G+ A  KL EL   +  ++
Sbjct: 554 GRNGRFDEALHMI-KNMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASY 612

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            L+  +Y       D ERV R + + G++
Sbjct: 613 VLMSNLYAMHEEWQDAERVRRRMDEIGVK 641



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 198/396 (50%), Gaps = 21/396 (5%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G + +A  +FD+M  +   A  W + ISG    G+ E A A++  M E GV  + F    
Sbjct: 56  GRLSDALDLFDRMPRKNVVA--WTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNA 113

Query: 200 VLKACAGLGLI--RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
            L ACA  G     +GE+VH  AVR GF  D ++ + L+++Y++CG +  A  VF R+  
Sbjct: 114 ALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEA 173

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGW 317
            D++ Y S+++    +G L  A ++   M+  G  P+   ++S+LA    + IG Q+HG+
Sbjct: 174 PDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM-IGEQIHGY 232

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
           +L+      +  + +LI  YS+ G  D A  +F+++  K+VVSW S++    +D    +A
Sbjct: 233 MLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDA 292

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F +M  + V P+   F   L AC   GSV +G ++    + K  +   +     +++
Sbjct: 293 LRVFSEMISEAVEPNEFAFSIALGAC---GSVCLGRQIHCSAI-KCNLMTDIRVSNALLS 348

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD--- 491
           +YGR+G + E  + ++ K+E     V W A + A + +G     E A   L ++  +   
Sbjct: 349 MYGRSGFVSEVEA-VLGKIE-NPDLVSWTAAISANFQNG---FSEKAVALLLQMHSEGFT 403

Query: 492 -NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
            N++ F   +    +   LD   ++  + +  G +F
Sbjct: 404 PNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDF 439



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 199/418 (47%), Gaps = 15/418 (3%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H L        +  I S L+ LY+  G +  A +VF +M       +   SL+S  
Sbjct: 129 GEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGY--TSLVSAL 186

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
              G+   A+ +  QM  +G++P++ T   +L  C  +    +GE++H   ++       
Sbjct: 187 CRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM----IGEQIHGYMLKVMGSQSV 242

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           +   AL+D Y++ GD   A TVF+ + +K+++S+ SM+   I  G L +A  +F  MI  
Sbjct: 243 YASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMISE 302

Query: 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
             +P+  A S  L     + +G Q+H   ++  +  D+ ++N+L+ +Y + G + +   +
Sbjct: 303 AVEPNEFAFSIALGACGSVCLGRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAV 362

Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
              +   D+VSW + I A+ ++    +A+    QM  +G  P+   F S LS+CA L  +
Sbjct: 363 LGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALL 422

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
             G +L  + + K G   +V     ++N+Y + G I  A  +  + M      + W +L+
Sbjct: 423 DQGRQLHCLAL-KLGCDFKVCTGNALINMYSKCGQIGSA-RLAFDVMNLH-DVMSWNSLI 479

Query: 467 YACYLHGNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           +    HG   +   A  ++     +PD+     +L+    +AG + + E   R++ DR
Sbjct: 480 HGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGC-NHAGLVKEGETFFRLMTDR 536



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 13/170 (7%)

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHL--TF 393
           K G+L  A  LFD MP+K+VV+W + I   +++ +   A   F  M   GV  +      
Sbjct: 54  KSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNA 113

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
                A A  G++ +GE++ S+ V + G +      +C++ LY R G +  A   +  +M
Sbjct: 114 ALAACAAAGAGALSLGEQVHSLAV-RAGFAADAWIGSCLIELYSRCGSM-WAAEEVFRRM 171

Query: 454 EFEASPVVWG--ALLYACYLHGNVCMG-ETAAQKLFELEPDNEHNFELLI 500
           E   +P V G  +L+ A   +G++    E   Q + +    NEH    ++
Sbjct: 172 E---APDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSML 218


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 241/456 (52%), Gaps = 17/456 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G      TF  +L+ C  +     G  +H  I       +   ++ LL++YA  G ++
Sbjct: 98  QKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDME 157

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VFD +      A  W SLI+G        +A+ +Y  ME   V P++ T   VL A
Sbjct: 158 AALKVFDDIPKWNVVA--WTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVA 215

Query: 204 CAGLGLIRVGEKVH-------LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           CA    +  G  VH       LD  +    F+  +  A+VDMYAKCG +  AR +F+++ 
Sbjct: 216 CARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMP 275

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ 313
           +++L+++NSM+  Y  +G   EA D+F  M + GFDPD      ++   A+   L  G  
Sbjct: 276 HRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQA 335

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSK 370
           +H +V +  +  D  I  +L+ +Y+K G  ++A  +F  + +KDV +W S+I     H  
Sbjct: 336 LHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGH 395

Query: 371 DHEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
             EAL +F++M+ D  ++PD +T++ +LSAC+H+G V+ G+  F  M   +GI P  +HY
Sbjct: 396 GEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHY 455

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
            CMV+L  RAG + EA   +VEKM  E +  +W ALL  C ++ N+ + +   +++ ELE
Sbjct: 456 GCMVDLLSRAGRLGEA-ERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELE 514

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            D    + LL  IY  A R ++V+    ++ +R ++
Sbjct: 515 VDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQ 550



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 241/481 (50%), Gaps = 64/481 (13%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL--YATFGLIDEAHQVFDQMS 153
           SLLE C  +  ++   +LH L+ T  + ++    S+L+    Y+  G ++ A  VF+Q+ 
Sbjct: 10  SLLEKCKTMAELK---RLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQID 66

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
             + +   WNS+I GY+     ++A+ +Y +M ++G  PD FTFP VLKAC+ +    +G
Sbjct: 67  RPSLYI--WNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLG 124

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           + VH   V+ GF  D +   AL+ MYA CGD+  A  VFD I   +++++ S++ G I +
Sbjct: 125 QCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISN 184

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE------ 324
               EA  +++ M L    P+ + + ++L   A +  L  G  VH    + G++      
Sbjct: 185 DCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNS 244

Query: 325 -WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQ 380
            +++ +A +++ +Y+K G L  A  LF+ MP +++V+WNS+I A++   + +EAL  F  
Sbjct: 245 NFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSD 304

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           M   G  PD  TF+ ++ ACAHLG++  G+ L +  V K  ++        +V++Y ++G
Sbjct: 305 MRIAGFDPDKATFLCVIGACAHLGALVSGQALHAY-VSKTNLTDDTAIGTALVDMYAKSG 363

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE------------- 487
             + A  +  E  + + +   W +L+    +HG+     T  +K+ E             
Sbjct: 364 DAERAQQVFSELQKKDVT--AWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIG 421

Query: 488 --------------------------LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLV 520
                                     +EP  +H +  ++ +   AGRL + ER VE+M V
Sbjct: 422 VLSACSHVGKVEDGKNHFISMKNVHGIEPTTQH-YGCMVDLLSRAGRLGEAERLVEKMPV 480

Query: 521 D 521
           +
Sbjct: 481 E 481


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 262/493 (53%), Gaps = 49/493 (9%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGI 128
           +ALD + Q +++   +GI   + TF S L  C +L     G  +H R++ +N+  ++  +
Sbjct: 41  EALD-LYQQMDA---DGIQPDSITFTSALLACTKLA---DGKAIHARIVSSNM--ESDFV 91

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            S L+ +YA  G +  A Q F+++ N+      W SL++ Y + G Y +A+ LY +M+ E
Sbjct: 92  GSALINMYARCGDVSSARQAFEKIQNKHVVC--WTSLMTAYVQTGHYREALDLYGRMDHE 149

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF----------------------- 225
           GV  D  T+   L ACA LG ++ G+ +HL     GF                       
Sbjct: 150 GVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGELDAAR 209

Query: 226 ------GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
                   +  V NALV MYAKCG +  A++ F+  G KDL+S+N+M+  Y  HGL  EA
Sbjct: 210 AVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREA 269

Query: 280 FDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLR-RGVEWDLCIANSLIV 335
            D+++ M   G  PD V I+S L+  ++   L++G ++H  VL+ +  +  L +  +L+ 
Sbjct: 270 LDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVN 329

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA---LIYFEQMERDGVLPDHLT 392
           +Y + G+L+ A  +F+ M Q+DV+SW ++   +++   A   L  + +M   G+ P+ +T
Sbjct: 330 MYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEIT 389

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           F S+L  C+H G +  G   F  M  ++ + P  EH+ CMV+L GR+G + +A + +VE 
Sbjct: 390 FTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEA-LVES 448

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
           M ++   V W  +L +C  H +    + AA+++ EL+P+N   + LL  I+  AG   + 
Sbjct: 449 MPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEA 508

Query: 513 ERVERMLVDRGLE 525
             V+  + + GL+
Sbjct: 509 LEVQLSMKEMGLK 521



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 222/458 (48%), Gaps = 83/458 (18%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G ++EA +VFD + NR A +  W S+IS YA  G  ++A+ LY QM+ +G++PD 
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVS--WTSMISSYANNGFCDEALDLYQQMDADGIQPDS 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            TF   L AC  L     G+ +H   V      D FV +AL++MYA+CGD+  AR  F++
Sbjct: 59  ITFTSALLACTKLA---DGKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEK 114

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASL--LRIG 311
           I NK ++ + S++T Y+  G   EA D++  M   G   D V  ++++ A ASL  L+ G
Sbjct: 115 IQNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEG 174

Query: 312 AQVHGWVLRRGVE-----------------------------WDLCIANSLIVVYSKDGK 342
             +H  V   G +                              ++ + N+L+ +Y+K G 
Sbjct: 175 KAIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGS 234

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           L+ A   F+   +KD+VSWN++I A   H    EAL  ++ M   GVLPD +T  S LSA
Sbjct: 235 LELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSA 294

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           CA  GS+++G  + S +++       +     +VN+YGR G ++ A SM  +  + +   
Sbjct: 295 CAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDV-- 352

Query: 460 VVWGAL--LYA--------------CYLHG---------NVCMGETAA------------ 482
           + W A+  +YA                LHG         ++ +G + A            
Sbjct: 353 LSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLE 412

Query: 483 -QKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERM 518
            Q   E+ P  EH F  ++ + G +GRL D E  VE M
Sbjct: 413 MQSEHEVVPIREH-FLCMVDLLGRSGRLRDAEALVESM 449


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 144/469 (30%), Positives = 251/469 (53%), Gaps = 14/469 (2%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEH---GIKLHR-LIPTNLL 122
           ++  ++D  +  L+     G      TF S+L     L + E    G  +H  LI   ++
Sbjct: 123 SRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIV 182

Query: 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
                +++ L+ +Y  F L+DEA +VFD M  ++  +  W ++I GY ++G   +A  L+
Sbjct: 183 YLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIIS--WTTMIGGYVKIGHAVEAYGLF 240

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
           +QM+ + V  D   F  ++  C  +  + +   VH   ++ G      V N L+ MYAKC
Sbjct: 241 YQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKC 300

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G++  AR +FD I  K ++S+ SM+ GY+H G   EA D+FR MI     P+   +++++
Sbjct: 301 GNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVV 360

Query: 303 ---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              A+   L IG ++  ++   G+E D  +  SLI +YSK G + +A  +F+ +  KD+ 
Sbjct: 361 SACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLT 420

Query: 360 SWNSIIHA---HSKDHEALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            W S+I++   H   +EA+  F +M   +G++PD + + S+  AC+H G V+ G + F  
Sbjct: 421 VWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKS 480

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           M + +GI+P VEH  C+++L GR G +D A + I + M  +    VWG LL AC +HGNV
Sbjct: 481 MQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAI-QGMPPDVQAQVWGPLLSACRIHGNV 539

Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +GE A  +L +  P +  ++ L+  +Y + G+  +   +   +  +GL
Sbjct: 540 ELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGL 588



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 127/477 (26%), Positives = 220/477 (46%), Gaps = 49/477 (10%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
            S   +G+     T+  LL+ C  L +++HG  LH  +     + +  + + L+ +Y+  
Sbjct: 35  SSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKC 94

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
             +  A QVFD+M  R+  +  WN+++S Y+     + A++L  +M   G EP   TF  
Sbjct: 95  SHVASARQVFDEMPQRSVVS--WNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVS 152

Query: 200 VLKACAGLGLIR---VGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRI 255
           +L   + L       +G+ +H   ++ G  +    L N+L+ MY +   + +AR VFD +
Sbjct: 153 ILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLM 212

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGA 312
             K +IS+ +M+ GY+  G  VEA+ +F  M       D V   ++++    +R   + +
Sbjct: 213 DEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLAS 272

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---S 369
            VH  VL+ G      + N LI +Y+K G L  A  +FD + +K ++SW S+I  +    
Sbjct: 273 SVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLG 332

Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL----------------- 412
              EAL  F +M R  + P+  T  +++SACA LGS+ +G+ +                 
Sbjct: 333 HPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQT 392

Query: 413 --------FSVMVEKYGISPRVEH-----YACMVNLYGRAGLIDEAYSMIVEKMEFEA-- 457
                      +V+   +  RV       +  M+N Y   G+ +EA S+  +    E   
Sbjct: 393 SLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIM 452

Query: 458 -SPVVWGALLYACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
              +V+ ++  AC   G V  G     + QK F + P  EH    LI + G  G+LD
Sbjct: 453 PDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEH-CTCLIDLLGRVGQLD 508



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 177/337 (52%), Gaps = 23/337 (6%)

Query: 152 MSNRTAF---AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           MS R +F    + WN +I      G +   + +Y  M   GV  +  T+P +LKACA L 
Sbjct: 1   MSLRPSFRRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLP 60

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            I+ G  +H   ++ GF  D FV  ALVDMY+KC  +  AR VFD +  + ++S+N+M++
Sbjct: 61  SIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVS 120

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR------IGAQVHGWVLRRG 322
            Y     + +A  + + M + GF+P      SIL+  S L       +G  +H  +++ G
Sbjct: 121 AYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLG 180

Query: 323 VEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-DH--EALIYF 378
           + + ++ +ANSL+ +Y +   +D+A  +FD M +K ++SW ++I  + K  H  EA   F
Sbjct: 181 IVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLF 240

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            QM+   V  D + F++L+S C  +  + +   + S +V K G + +      ++ +Y +
Sbjct: 241 YQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHS-LVLKCGCNEKDPVENLLITMYAK 299

Query: 439 AGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLH 472
            G +  A   + +I+EK     S + W +++ A Y+H
Sbjct: 300 CGNLTSARRIFDLIIEK-----SMLSWTSMI-AGYVH 330


>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
 gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 241/443 (54%), Gaps = 41/443 (9%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H  +    L ++  + + L+  Y+    +  A ++FD+M  R      WNS+I+GY
Sbjct: 143 GKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVT--WNSMIAGY 200

Query: 170 AELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           A+ G +++   LY +M    G +P+  T   VL+AC     +  G +VH   V      D
Sbjct: 201 AQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELD 260

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR---- 284
             V NAL+ +YAKCG +  AR +FD +  KD ++Y ++++GY+ HG++ +  ++FR    
Sbjct: 261 VLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKS 320

Query: 285 -----------GMILN----------------GFDPDPVAISSILANASL---LRIGAQV 314
                      G++ N                GF P+ V +SS+L   S    L+ G ++
Sbjct: 321 RVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEI 380

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--- 371
           HG+ ++ G + ++ +A ++I  Y+K G L  A ++FD   ++ ++ W +II AH+     
Sbjct: 381 HGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDA 440

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
           + AL +F++M  +G+ PDH+TF ++L+ACAH G V     +F+ M +KYGI P  EHYAC
Sbjct: 441 NSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYAC 500

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV + GRAG + +A   I   M  E +  VWGALL+   L  +V +G+ A   LFE+EP+
Sbjct: 501 MVGVLGRAGRLSQATEFI-STMPIEPNAKVWGALLHGASLCVDVELGKFACDHLFEIEPE 559

Query: 492 NEHNFELLIKIYGNAGRLDDVER 514
           N  N+ ++  +Y  AG+  + + 
Sbjct: 560 NTGNYAIMANLYSQAGKWKEADE 582



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 198/411 (48%), Gaps = 51/411 (12%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI---ALYFQ 184
           + ++L+ LY+    I  A  VFDQ+ ++  F++  N+L+  Y     +++ I   +    
Sbjct: 54  LGARLINLYSKTKHIHHARHVFDQIPHKNTFSY--NALLIAYTMNNHHKETINLFSSLLL 111

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIR---VGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
                ++P+ ++   +LK+ + L ++    +G+++H   +R G   D FV NAL+  Y+K
Sbjct: 112 SSSGDLQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYSK 171

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISS 300
           C  +  AR +FD++  +D++++NSM+ GY   G   E  +++R M  L GF P+ V + S
Sbjct: 172 CLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLS 231

Query: 301 ILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           +L     +  L  G +VH +++   VE D+ + N+LI +Y+K G LD A  LFD M +KD
Sbjct: 232 VLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKD 291

Query: 358 VV-------------------------------SWNSIIHA--HSKDHEALI-YFEQMER 383
            V                               +WN++I     +  HE ++    +M+ 
Sbjct: 292 EVTYGAIISGYMAHGVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQG 351

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G  P+ +T  S+L   ++  ++K G+ +    V K G    +     +++ Y + G + 
Sbjct: 352 LGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAV-KNGYDRNIYVATAIIDTYAKLGFLF 410

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE--LEPDN 492
            A    V     E S ++W A++ A   HG+     T   ++    ++PD+
Sbjct: 411 GA--QYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQPDH 459



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 163/396 (41%), Gaps = 72/396 (18%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G      T  S+L+ C Q + +  G+++HR I  N +  +  + + L+ LYA  G +D A
Sbjct: 221 GFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYA 280

Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
            ++FD+MS +    +                              WN++ISG  +   +E
Sbjct: 281 RELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHE 340

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
             + L  +M+  G  P+  T   VL   +    ++ G+++H  AV+ G+  + +V  A++
Sbjct: 341 GVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVATAII 400

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D YAK G +  A+ VFD+   + LI + ++++ +  HG    A   F  M+ NG  PD V
Sbjct: 401 DTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQPDHV 460

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIA------NSLIVVYSKDGKLDQACWLF 350
             +++LA  +    G     W +   +     I         ++ V  + G+L QA    
Sbjct: 461 TFTAVLAACA--HCGMVDKAWEIFNSMSKKYGIQPLGEHYACMVGVLGRAGRLSQATEFI 518

Query: 351 DHMP-QKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
             MP + +   W +++H  S                           L     LG     
Sbjct: 519 STMPIEPNAKVWGALLHGAS---------------------------LCVDVELGKFAC- 550

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + LF +  E  G      +YA M NLY +AG   EA
Sbjct: 551 DHLFEIEPENTG------NYAIMANLYSQAGKWKEA 580



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 133/269 (49%), Gaps = 24/269 (8%)

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI---HHGLLVEAFDIF 283
            D ++   L+++Y+K   I  AR VFD+I +K+  SYN++L  Y    HH   +  F   
Sbjct: 50  LDNYLGARLINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSL 109

Query: 284 RGMILNGFDPDPVAISSILANASLLR------IGAQVHGWVLRRGVEWDLCIANSLIVVY 337
                    P+  +I+ +L + S L       +G ++H +VLRRG+  D+ + N+LI  Y
Sbjct: 110 LLSSSGDLQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFY 169

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQMERDGVLPDHLTF 393
           SK   +  A  LFD M ++DVV+WNS+I  +++         +Y E     G  P+ +T 
Sbjct: 170 SKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTV 229

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN----LYGRAGLIDEAYSMI 449
           +S+L AC     ++  + +F + V +Y +  +VE    + N    LY + G +D A  + 
Sbjct: 230 LSVLQAC-----MQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELF 284

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMG 478
            E    E   V +GA++     HG V  G
Sbjct: 285 DEMS--EKDEVTYGAIISGYMAHGVVDKG 311


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 252/449 (56%), Gaps = 19/449 (4%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T ++L +   +L A+  G  +H          +  +++ ++ +Y   G  +E+ +VFD+M
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185

Query: 153 SNRTAFAFPWNSLISGYAELGE---YEDAIALYFQMEEEGVEPDQFTFPRVLKACAG-LG 208
           + R + +  WN LI+GYA  G     E+      QM+ + V PD +T   +L  C G  G
Sbjct: 186 TIRNSGS--WNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKG 243

Query: 209 LIRVGEKVHLDAVR----FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
               G ++H   V+     G   D  +   L+DMY++   +V  R VFDR+  +++ S+ 
Sbjct: 244 KWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWT 303

Query: 265 SMLTGYIHHGLLVEAFDIFRGM-ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           +M+ GY+ +G   EA  +FR M +++G +P+ V++ S+L   ++ S L  G Q+HG+ +R
Sbjct: 304 AMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVR 363

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + +  ++ + N+LI +YSK G LD A  +F D    KD +SW+S+I     H K  EA++
Sbjct: 364 KELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAIL 423

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            +++M + G+ PD +T V +LSAC+  G V  G  ++S ++  YGI P +E +AC+V++ 
Sbjct: 424 LYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDML 483

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG +D A   I + M  E  P VWGAL+    +HG++ M E A + L +LEP+N  N+
Sbjct: 484 GRAGQLDPALDFI-KAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNY 542

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             +  +Y ++ R D V  V RM+ D+ L 
Sbjct: 543 VSISNLYASSRRWDAVAEVRRMMKDKRLR 571



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 190/375 (50%), Gaps = 19/375 (5%)

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H  I +  L +N  +++KL+  YA       +  VFD + ++  F   WNSLI+GYA+  
Sbjct: 46  HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFL--WNSLINGYAKNR 103

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233
            Y +A  L+ QM    V PD FT   + K  + LG +  G+ +H  ++R GF  D  V N
Sbjct: 104 LYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVAN 163

Query: 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG---LLVEAFDIFRGMILNG 290
           +++ MY KCG+  ++R VFD +  ++  S+N ++ GY   G      E ++  + M ++ 
Sbjct: 164 SIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDE 223

Query: 291 FDPDPVAISSIL----ANASLLRIGAQVHGWVLRR----GVEWDLCIANSLIVVYSKDGK 342
             PD   ISS+L     +      G ++H ++++     G++ D+ +   LI +YS+  K
Sbjct: 224 VRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK 283

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER-DGVLPDHLTFVSLLS 398
           +     +FD M  ++V SW ++I+ + ++    EAL  F  M+  DG+ P+ ++ VS+L 
Sbjct: 284 VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLP 343

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+    +  G ++    V K  ++  V     ++++Y + G +D A   + E       
Sbjct: 344 ACSSFSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSA-RRVFEDDSLCKD 401

Query: 459 PVVWGALLYACYLHG 473
            + W +++    LHG
Sbjct: 402 AISWSSMISGYGLHG 416



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 146/359 (40%), Gaps = 58/359 (16%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +++  + H   +  G   +  +   L+  YA C     +R VFD + +K++  +NS++ G
Sbjct: 39  LKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWD 326
           Y  + L  EAF +F  M  +   PD   +S++   +S L     G  +HG  +R G   D
Sbjct: 99  YAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSD 158

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD------HEALIYFEQ 380
             +ANS++ +Y K G  +++  +FD M  ++  SWN +I  ++         E   + +Q
Sbjct: 159 TVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218

Query: 381 MERDGVLPDHLTFVSLLSAC-----------------------------AHLG------- 404
           M+ D V PD  T  SLL  C                              HLG       
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY 278

Query: 405 ----SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM---EFEA 457
                V VG R+F  M  +      V  +  M+N Y   G  DEA S+  +       E 
Sbjct: 279 SRSNKVVVGRRVFDRMKCR-----NVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEP 333

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF-ELLIKIYGNAGRLDDVERV 515
           + V   ++L AC     +  G          E +NE +    LI +Y   G LD   RV
Sbjct: 334 NRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRV 392



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           S+ +D++  V +GI     +  S+L  C     +  G ++H       L     + + L+
Sbjct: 320 SLFRDMQ--VIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 377

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            +Y+  G +D A +VF+  S     A  W+S+ISGY   G+ ++AI LY +M + G+ PD
Sbjct: 378 DMYSKCGSLDSARRVFEDDS-LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 436

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNALVDMYAKCG------DIV 246
             T   +L AC+  GL+  G  ++   +  +G      +   +VDM  + G      D +
Sbjct: 437 MITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFI 496

Query: 247 KARTV 251
           KA  V
Sbjct: 497 KAMPV 501


>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
 gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
          Length = 502

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 237/437 (54%), Gaps = 16/437 (3%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           L+  C    A+  G ++H       L  N  + +  + LY+  G +  A QVFD MS  +
Sbjct: 12  LIRRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVFDGMSFPS 71

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
             A+  N L++          A+ L  ++   G+ PD+++ P VL+ACA L  + +G   
Sbjct: 72  MHAY--NVLLAASPP----GTAVELISRLLASGLRPDRYSIPAVLRACAELRDMLLGAVF 125

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H  A+R G   +  V  AL+DMYAK G +  A  VFD +  +D + +N M+TGY   G  
Sbjct: 126 HGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAGRS 185

Query: 277 VEAFDIFRGMILNGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRR-GVEWDLCIA 330
            E  ++FR   +   D   D  A+ ++L   AN   L  G ++HG ++R    + D+ + 
Sbjct: 186 EETLELFRKAQIESVDMARDLRAVPNVLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVG 245

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVL 387
           N+L+ +Y+K G++D A  +F  M  ++V+SW+++I     H    EAL  +E+M   GV 
Sbjct: 246 NALVDMYAKCGQVDGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVK 305

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ +TF+S+LS+C+H G V  G R+F  M + + + P  +HYACMV+L GRAG I+EA  
Sbjct: 306 PNCITFISILSSCSHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVG 365

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
            I+ KM  E    +WGALL AC  H NV +GE AA KLFELE  N  N+  L  IY   G
Sbjct: 366 -IIRKMPMEPGASLWGALLSACATHNNVDVGEVAAYKLFELEEGNASNYVTLCGIYDAIG 424

Query: 508 RLDDVERVERMLVDRGL 524
           R D V  +   + + G+
Sbjct: 425 RSDSVSGIRSRMRELGM 441



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 192/415 (46%), Gaps = 56/415 (13%)

Query: 1   MVTILYPPSSFHTSLVIIH--CGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLL 58
           +V  L P ++  T  V+++  CG+ ++      RQ    +S   +  ++    +SP    
Sbjct: 33  LVGGLLPNTTLDTDFVLLYSRCGALHRA-----RQVFDGMSFPSMHAYNVLLAASP---- 83

Query: 59  TNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP 118
                 P T ++ +  ++        +G+     +  ++L  C +L+ +  G   H L  
Sbjct: 84  ------PGTAVELISRLLA-------SGLRPDRYSIPAVLRACAELRDMLLGAVFHGLAL 130

Query: 119 TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
              L  N  +S  LL +YA  G++ +A +VFD+M  R A    WN +++GYA  G  E+ 
Sbjct: 131 RLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPERDAVV--WNCMVTGYARAGRSEET 188

Query: 179 IALYFQMEEEGVE--PDQFTFPRVLKACAGLGLIRVGEKVHLDAVR-FGFGFDGFVLNAL 235
           + L+ + + E V+   D    P VL  CA  G +  G ++H   VR F F  D  V NAL
Sbjct: 189 LELFRKAQIESVDMARDLRAVPNVLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNAL 248

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           VDMYAKCG +  A+ VF  +  ++++S++++++ Y  HG+  EA  I+  M+  G  P+ 
Sbjct: 249 VDMYAKCGQVDGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNC 308

Query: 296 VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +   SIL++ S        H  ++  G      I  S+  V++ +   D    + D + +
Sbjct: 309 ITFISILSSCS--------HSGLVSDGRR----IFESMSKVHAVEPTADHYACMVDLLGR 356

Query: 356 KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
              +             EA+    +M  +   P    + +LLSACA   +V VGE
Sbjct: 357 AGAI------------EEAVGIIRKMPME---PGASLWGALLSACATHNNVDVGE 396


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 250/447 (55%), Gaps = 13/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T+  +   C +L+ +  G  +H  +    L ++  I+  L+ +YA  G +  
Sbjct: 122 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGY 181

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++FD+++ R   +  WNS+ISGY+E G  +DA+ L+ +MEEEG EPD+ T   +L AC
Sbjct: 182 ARKLFDEITERDTVS--WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGAC 239

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +R G  +   A+    G   F+ + L+ MY KCGD+  AR VF+++  KD +++ 
Sbjct: 240 SHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWT 299

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           +M+T Y  +G   EAF +F  M   G  PD   +S++L+   +   L +G Q+       
Sbjct: 300 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASEL 359

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
            ++ ++ +A  L+ +Y K G++++A  +F+ MP K+  +WN++I A++      EAL+ F
Sbjct: 360 SLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLF 419

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M    V P  +TF+ +LSAC H G V  G R F  M   +G+ P++EHY  +++L  R
Sbjct: 420 DRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSR 476

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-EPDNEHNFE 497
           AG++DEA+  + E+   +   ++  A+L AC+   +V + E A + L E+ E  N  N+ 
Sbjct: 477 AGMLDEAWEFM-ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYV 535

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +   +  +    D+  ++  ++ DRG+
Sbjct: 536 ISSNVLADMKMWDESAKMRALMRDRGV 562



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 179/328 (54%), Gaps = 27/328 (8%)

Query: 160 FPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           + +N +I G      ++E A++LY +M+  G++PD+FT+  V  ACA L  I VG  VH 
Sbjct: 93  YSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHS 152

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              + G   D  + ++L+ MYAKCG +  AR +FD I  +D +S+NSM++GY   G   +
Sbjct: 153 SLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKD 212

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A D+FR M   GF+PD   + S+L   S    LR G  +    + + +     + + LI 
Sbjct: 213 AMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLIS 272

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLT 392
           +Y K G LD A  +F+ M +KD V+W ++I  +S   K  EA   F +ME+ GV PD  T
Sbjct: 273 MYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGT 332

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLIDEAYSM 448
             ++LSAC  +G++++G++     +E +     ++H       +V++YG+ G ++EA  +
Sbjct: 333 LSTVLSACGSVGALELGKQ-----IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 387

Query: 449 IVEKMEFEASPV----VWGALLYACYLH 472
                 FEA PV     W A++ A Y H
Sbjct: 388 ------FEAMPVKNEATWNAMITA-YAH 408



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 153/336 (45%), Gaps = 34/336 (10%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G      T  S+L  C  L  +  G  L  +  T  +  +  + SKL+ +Y   G +D
Sbjct: 222 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLD 281

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VF+QM  +   A  W ++I+ Y++ G+  +A  L+F+ME+ GV PD  T   VL A
Sbjct: 282 SARRVFNQMIKKDRVA--WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 339

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  +G + +G+++   A       + +V   LVDMY KCG + +A  VF+ +  K+  ++
Sbjct: 340 CGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATW 399

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-VHGWVLRRG 322
           N+M+T Y H G   EA  +F  M +   D   + + S   +A L+  G +  H      G
Sbjct: 400 NAMITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFG 459

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           +   +    ++I + S+ G LD+A W F                              ME
Sbjct: 460 LVPKIEHYTNIIDLLSRAGMLDEA-WEF------------------------------ME 488

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           R    PD +   ++L AC     V + E+   +++E
Sbjct: 489 RFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLME 524


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 250/447 (55%), Gaps = 13/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T+  +   C +L+ +  G  +H  +    L ++  I+  L+ +YA  G +  
Sbjct: 126 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGY 185

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A ++FD+++ R   +  WNS+ISGY+E G  +DA+ L+ +MEEEG EPD+ T   +L AC
Sbjct: 186 ARKLFDEITERDTVS--WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGAC 243

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + LG +R G  +   A+    G   F+ + L+ MY KCGD+  AR VF+++  KD +++ 
Sbjct: 244 SHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWT 303

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           +M+T Y  +G   EAF +F  M   G  PD   +S++L+   +   L +G Q+       
Sbjct: 304 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASEL 363

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
            ++ ++ +A  L+ +Y K G++++A  +F+ MP K+  +WN++I A++      EAL+ F
Sbjct: 364 SLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLF 423

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M    V P  +TF+ +LSAC H G V  G R F  M   +G+ P++EHY  +++L  R
Sbjct: 424 DRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSR 480

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-EPDNEHNFE 497
           AG++DEA+   +E+   +   ++  A+L AC+   +V + E A + L E+ E  N  N+ 
Sbjct: 481 AGMLDEAWE-FMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYV 539

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           +   +  +    D+  ++  ++ DRG+
Sbjct: 540 ISSNVLADMKMWDESAKMRALMRDRGV 566



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 179/328 (54%), Gaps = 27/328 (8%)

Query: 160 FPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           + +N +I G      ++E A++LY +M+  G++PD+FT+  V  ACA L  I VG  VH 
Sbjct: 97  YSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHS 156

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              + G   D  + ++L+ MYAKCG +  AR +FD I  +D +S+NSM++GY   G   +
Sbjct: 157 SLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKD 216

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A D+FR M   GF+PD   + S+L   S    LR G  +    + + +     + + LI 
Sbjct: 217 AMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLIS 276

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLT 392
           +Y K G LD A  +F+ M +KD V+W ++I  +S   K  EA   F +ME+ GV PD  T
Sbjct: 277 MYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGT 336

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH----YACMVNLYGRAGLIDEAYSM 448
             ++LSAC  +G++++G++     +E +     ++H       +V++YG+ G ++EA  +
Sbjct: 337 LSTVLSACGSVGALELGKQ-----IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 391

Query: 449 IVEKMEFEASPV----VWGALLYACYLH 472
                 FEA PV     W A++ A Y H
Sbjct: 392 ------FEAMPVKNEATWNAMITA-YAH 412



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 153/336 (45%), Gaps = 34/336 (10%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G      T  S+L  C  L  +  G  L  +  T  +  +  + SKL+ +Y   G +D
Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLD 285

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VF+QM  +   A  W ++I+ Y++ G+  +A  L+F+ME+ GV PD  T   VL A
Sbjct: 286 SARRVFNQMIKKDRVA--WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 343

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C  +G + +G+++   A       + +V   LVDMY KCG + +A  VF+ +  K+  ++
Sbjct: 344 CGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATW 403

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ-VHGWVLRRG 322
           N+M+T Y H G   EA  +F  M +   D   + + S   +A L+  G +  H      G
Sbjct: 404 NAMITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFG 463

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
           +   +    ++I + S+ G LD+A W F                              ME
Sbjct: 464 LVPKIEHYTNIIDLLSRAGMLDEA-WEF------------------------------ME 492

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           R    PD +   ++L AC     V + E+   +++E
Sbjct: 493 RFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLME 528


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 229/433 (52%), Gaps = 36/433 (8%)

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF------------------------ 160
           N  + S L+ +YA  GLI +A +VFD+M  +    +                        
Sbjct: 174 NAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMT 233

Query: 161 -----PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
                 W ++++G+ + G    A+  + +M  +G+  DQ+TF  +L AC  L  +  G++
Sbjct: 234 DRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQ 293

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +H   +R  +  + FV +ALVDMY+KC  I  A T F R+  K++IS+ +++ GY  +G 
Sbjct: 294 IHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGC 353

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
             EA  +F  M  +G DPD   + S++   AN + L  GAQ H   L  G+   + ++N+
Sbjct: 354 SEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNA 413

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPD 389
           L+ +Y K G ++ A  LFD M   D VSW +++  ++   +  E +  FE+M    V PD
Sbjct: 414 LVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPD 473

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
            +TF+ +LSAC+  G V+ G   F  M + +GI P  +HY CM++LY R+G + EA   I
Sbjct: 474 GVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFI 533

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509
            ++M      + WG LL AC L G++ +G+ AA+ L E++P N  ++ LL  ++   G  
Sbjct: 534 -KQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNW 592

Query: 510 DDVERVERMLVDR 522
           + V ++ R + DR
Sbjct: 593 NQVAQLRRGMRDR 605



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 211/457 (46%), Gaps = 79/457 (17%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-- 189
           LL   A   L+D+   +F  M+ R   ++  N++I+G++  G +  A+ LY  +   G  
Sbjct: 78  LLSTLAHARLLDDMDSLFASMAQRDTVSY--NAVIAGFSGGGAHARAVRLYHTLLRAGSS 135

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V P + T   ++ A + LG   +G + H   +R GFG + FV + LV MYAK G I  A+
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195

Query: 250 TVFDRIGNKDLISYNSML-------------------------------TGYIHHGLLVE 278
            VFD +  K+++ YN+M+                               TG+  +GL  +
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQ 255

Query: 279 AFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A + FR M   G   D     SIL      S L  G Q+H +++R   + ++ + ++L+ 
Sbjct: 256 ALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVD 315

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLT 392
           +YSK   +  A   F  M  K+++SW ++I  + ++    EA+  F +M+RDG+ PD  T
Sbjct: 316 MYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFT 375

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM---- 448
             S++S+CA+L S++ G + F  +    G+   +     +V LYG+ G I++A+ +    
Sbjct: 376 LGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM 434

Query: 449 --------------------------IVEKM---EFEASPVVWGALLYACYLHGNV---C 476
                                     + EKM   + +   V +  +L AC   G V   C
Sbjct: 435 LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGC 494

Query: 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
               + QK   + P ++H +  +I +Y  +GRL + E
Sbjct: 495 SYFHSMQKDHGIVPIDDH-YTCMIDLYSRSGRLKEAE 530



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 139/290 (47%), Gaps = 11/290 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            GI +   TF S+L  C  L A+E G ++H  I       N  + S L+ +Y+    I  
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKP 325

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A   F +MS +   +  W +LI GY + G  E+A+ ++ +M+ +G++PD FT   V+ +C
Sbjct: 326 AETAFRRMSCKNIIS--WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSC 383

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A L  +  G + H  A+  G      V NALV +Y KCG I  A  +FD +   D +S+ 
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWT 443

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           +++TGY   G   E  D+F  M+     PD V    +L+  S  R G    G      ++
Sbjct: 444 ALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACS--RAGFVEKGCSYFHSMQ 501

Query: 325 WDLCIA------NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
            D  I         +I +YS+ G+L +A      MP   D + W +++ A
Sbjct: 502 KDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSA 551



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 100/191 (52%), Gaps = 10/191 (5%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++GI     T  S++ +C  L ++E G + H L   + L     +S+ L+ LY   G I+
Sbjct: 366 RDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +AH++FD+M      +  W +L++GYA+ G  ++ I L+ +M  + V+PD  TF  VL A
Sbjct: 426 DAHRLFDEMLFHDQVS--WTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSA 483

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGF----DGFVLNALVDMYAKCGDIVKARTVFDRIG-NK 258
           C+  G +  G   +  +++   G     D +    ++D+Y++ G + +A     ++  + 
Sbjct: 484 CSRAGFVEKGCS-YFHSMQKDHGIVPIDDHY--TCMIDLYSRSGRLKEAEEFIKQMPMHP 540

Query: 259 DLISYNSMLTG 269
           D I + ++L+ 
Sbjct: 541 DAIGWGTLLSA 551



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 150/361 (41%), Gaps = 78/361 (21%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           F  NAL+   A    +    ++F  +  +D +SYN+++ G+   G    A  ++  ++  
Sbjct: 73  FTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRA 132

Query: 290 G--FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSK----- 339
           G    P  + +S+++  AS L    +G Q H  +LR G   +  + + L+ +Y+K     
Sbjct: 133 GSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIG 192

Query: 340 ---------DGK-----------------LDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
                    DGK                 +++A  LF+ M  +D ++W +++   ++   
Sbjct: 193 DAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGL 252

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF---------------SV 415
           + +AL +F +M   G+  D  TF S+L+AC  L +++ G+++                S 
Sbjct: 253 ESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSA 312

Query: 416 MVEKY----GISP-----------RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP- 459
           +V+ Y     I P            +  +  ++  YG+ G  +EA  +  E       P 
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 460 -VVWGALLYACYLHGNVCMGETAAQ-KLFELEPDNEHNFEL---LIKIYGNAGRLDDVER 514
               G+++ +C    N+   E  AQ     L     H   +   L+ +YG  G ++D  R
Sbjct: 373 DFTLGSVISSC---ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 515 V 515
           +
Sbjct: 430 L 430


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 227/386 (58%), Gaps = 9/386 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +    Q+FD M   +  +  WN+++SGY +  ++ +A+ L+ +M+ +   PD+ T   
Sbjct: 364 GDVRTGRQIFDCMPCPSLTS--WNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAV 421

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L +CA LG +  G++VH  + +FGF  D +V ++L+++Y+KCG +  ++ VF ++   D
Sbjct: 422 ILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELD 481

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
           ++ +NSML G+  + L  +A   F+ M   GF P   + ++++   A  S L  G Q H 
Sbjct: 482 VVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHA 541

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HE 373
            +++ G   D+ + +SLI +Y K G ++ A   FD MP ++ V+WN +IH ++++   H 
Sbjct: 542 QIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHN 601

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  +  M   G  PD +T+V++L+AC+H   V  G  +F+ M++KYG+ P+V HY C++
Sbjct: 602 ALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCII 661

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +   RAG  +E   +I++ M  +   VVW  +L +C +H N+ + + AA++L+ L+P N 
Sbjct: 662 DCLSRAGRFNEV-EVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNS 720

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
            ++ LL  +Y + G+ DD   V  ++
Sbjct: 721 ASYVLLANMYSSLGKWDDAHVVRDLM 746



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 211/470 (44%), Gaps = 61/470 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
             A+L++ C   KA   G  +H  +    L  +  +S+  + LY+    I  A  VFD +
Sbjct: 8   NLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNI 67

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE------------------------- 187
            ++  F+  WN++++ Y +    + A  L+ QM +                         
Sbjct: 68  PHKNIFS--WNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDT 125

Query: 188 ------EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241
                 +GV P   TF  V  AC  L     G + H   ++ G   + +V+NAL+ MYAK
Sbjct: 126 YDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAK 185

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           CG    A  VF  I   + +++ +M+ G      + EA ++FR M+  G   D V++SS+
Sbjct: 186 CGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSM 245

Query: 302 LA-------------NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           L                S    G Q+H   ++ G E DL + NSL+ +Y+K G +D A  
Sbjct: 246 LGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEK 305

Query: 349 LFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F ++ +  VVSWN +I  +       +A  Y ++M+ DG  PD +T++++L+AC   G 
Sbjct: 306 VFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGD 365

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---SPVVW 462
           V+ G ++F  M       P +  +  +++ Y +     EA  +   KM+F+         
Sbjct: 366 VRTGRQIFDCMP-----CPSLTSWNAILSGYNQNADHREAVELF-RKMQFQCQHPDRTTL 419

Query: 463 GALLYACYLHGNVCMGET--AAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
             +L +C   G +  G+   AA + F    D+ +    LI +Y   G+++
Sbjct: 420 AVILSSCAELGFLEAGKEVHAASQKFGFY-DDVYVASSLINVYSKCGKME 468



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 190/410 (46%), Gaps = 54/410 (13%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QALD+     +S + +G+     TFA++   C  L   + G + H ++    L  N  + 
Sbjct: 121 QALDT----YDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVV 176

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + LL +YA  GL  +A +VF  +       F   +++ G A+  + ++A  L+  M  +G
Sbjct: 177 NALLCMYAKCGLNADALRVFRDIPEPNEVTF--TTMMGGLAQTNQIKEAAELFRLMLRKG 234

Query: 190 VEPDQFTFPRVLKACA----------GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           +  D  +   +L  CA          G+     G+++H  +V+ GF  D  + N+L+DMY
Sbjct: 235 IRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMY 294

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299
           AK GD+  A  VF  +    ++S+N M+ GY +     +A +  + M  +G++PD V   
Sbjct: 295 AKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYI 354

Query: 300 SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           ++L                         C+         K G +     +FD MP   + 
Sbjct: 355 NMLT-----------------------ACV---------KSGDVRTGRQIFDCMPCPSLT 382

Query: 360 SWNSIIHAHSK--DH-EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           SWN+I+  +++  DH EA+  F +M+     PD  T   +LS+CA LG ++ G+ + +  
Sbjct: 383 SWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAA- 441

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +K+G    V   + ++N+Y + G ++ +  +  +  E +   V W ++L
Sbjct: 442 SQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDV--VCWNSML 489


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 240/438 (54%), Gaps = 11/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S++  C  L     G +LH  +       N  + + L+++Y + G   EA  VF  M
Sbjct: 238 TMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGM 297

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W ++ISG  +    + A+  Y  ME  G  PD+ T   VL ACA LG + +
Sbjct: 298 ECRDVVS--WTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDM 355

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G K+H  A R G      V N+L+DMY+KC  I KA  +F +I +KD+IS+ S++ G   
Sbjct: 356 GMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRI 415

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +    EA   FR MIL    P+ V + S L   A    L  G ++H   L+ G+ +D  +
Sbjct: 416 NNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFL 474

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERDGV 386
            N+++ +Y + G++  A   F+ + +KDV +WN ++  +++  +  +    F++M    +
Sbjct: 475 PNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEI 533

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF+SLL AC+  G V  G   F  M   Y I+P ++HYAC+V+L GRAG ++EA+
Sbjct: 534 NPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAH 593

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I E+M  +  P +WGALL AC +H +V +GE AAQ +F+ + ++   + LL  +Y ++
Sbjct: 594 EFI-ERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADS 652

Query: 507 GRLDDVERVERMLVDRGL 524
           G+ D+V +V R + + GL
Sbjct: 653 GKWDEVAKVRRTMKEEGL 670



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/395 (32%), Positives = 221/395 (55%), Gaps = 12/395 (3%)

Query: 59  TNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP 118
           TN +         L+  ++ L S  +  I V+ + F +L+  C   +    G  + + + 
Sbjct: 1   TNSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVL 60

Query: 119 TNLLRK-NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177
           ++L+   +  + + LL ++  FG +  A  VF +M  R  F+  WN L+ GY + G +++
Sbjct: 61  SSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFS--WNVLVGGYTKAGFFDE 118

Query: 178 AIALYFQMEEEGVEPDQFTFPRVLKACAG-LGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           A+ LY ++   G+ PD +TFP VL++CAG + L+R G +VH   VRF F  D  V+NAL+
Sbjct: 119 ALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVR-GREVHAHVVRFDFDMDVDVVNALI 177

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
            MY KCGD+V AR +FD++  +D IS+N+M++GY  +   +E  ++F  M     DPD +
Sbjct: 178 TMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLM 237

Query: 297 AISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
            ++S+++   LL   R+G Q+H +V+R   + ++ + NSLI +Y   G   +A  +F  M
Sbjct: 238 TMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGM 297

Query: 354 PQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
             +DVVSW +II     +    +AL  ++ ME  G +PD +T  S+LSACA LG + +G 
Sbjct: 298 ECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM 357

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +L   + E+ G    V     ++++Y +   I++A
Sbjct: 358 KLHE-LAERTGHILYVVVANSLIDMYSKCKRIEKA 391


>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
           [Vitis vinifera]
 gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 212/374 (56%), Gaps = 9/374 (2%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F WN++I  Y  L  +  A+++Y  M   GV PD +T P VLKA         G +VH  
Sbjct: 95  FQWNNIIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSV 154

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A+R G   + +  +  + +Y+K G+   A  VF++   + L S+N+++ G    G   EA
Sbjct: 155 AIRHGLELNEYCESGFISVYSKAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEA 214

Query: 280 FDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVL--RRGVEWDLCIANSLI 334
             +F  M   GF+PD V + S+  A  SL  L +  Q+H  V   +     D    NSL+
Sbjct: 215 VTMFMEMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHKCVYQAKTSERSDTLTLNSLV 274

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHL 391
            +Y K G++D A  +F  M + +V SW S+I     H + ++AL  F  M   GV P+H+
Sbjct: 275 DMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDALECFRCMREAGVRPNHV 334

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           TF+ +LSAC H G+V+ G+  F +M   YG+ PR++HY CMV+L GRAGL++EA  M VE
Sbjct: 335 TFIGVLSACVHGGAVQEGKYYFDMMTTAYGLVPRMQHYGCMVDLLGRAGLLEEARKM-VE 393

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           +M  +A+ +VWG L+ AC  +GNV MGE  A+ L ELEP N+  F +L  IY + G   +
Sbjct: 394 RMPMKANVIVWGCLMGACEKYGNVKMGEWVAEHLLELEPWNDGVFVVLSNIYASRGLWRE 453

Query: 512 VERVERMLVDRGLE 525
           VERV  ++ +R L+
Sbjct: 454 VERVRGVMKERKLD 467



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 25/332 (7%)

Query: 54  PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKL 113
           P P   N      T+L+A    +    +  + G++  + T   +L+   Q  A   G ++
Sbjct: 92  PAPFQWNNIIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQV 151

Query: 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173
           H +   + L  N+   S  + +Y+  G    AH+VF+Q  NR      WN++I G ++ G
Sbjct: 152 HSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKVFEQ--NRFRKLGSWNAIIGGLSQGG 209

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH--LDAVRFGFGFDGFV 231
             ++A+ ++ +M + G EPD+ T   V  AC  LG + +  ++H  +   +     D   
Sbjct: 210 RAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHKCVYQAKTSERSDTLT 269

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
           LN+LVDMY KCG +  A  VF R+   ++ S+ SM+ GY  HG L +A + FR M   G 
Sbjct: 270 LNSLVDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDALECFRCMREAGV 329

Query: 292 DPDPVAISSILANASLLRIGAQVHGWVLRRGVEW-DLCIA-----------NSLIVVYSK 339
            P+ V    +L+        A VHG  ++ G  + D+                ++ +  +
Sbjct: 330 RPNHVTFIGVLS--------ACVHGGAVQEGKYYFDMMTTAYGLVPRMQHYGCMVDLLGR 381

Query: 340 DGKLDQACWLFDHMPQK-DVVSWNSIIHAHSK 370
            G L++A  + + MP K +V+ W  ++ A  K
Sbjct: 382 AGLLEEARKMVERMPMKANVIVWGCLMGACEK 413


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 237/433 (54%), Gaps = 13/433 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S L +C  L  +  G +LH       L  +  +S+ LL LY   G + E  + F  M
Sbjct: 492 TMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM 551

Query: 153 SNRTAFAFPWNSLISGYAEL-GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
            +    +  WNSLI   A+      +A+  +  M   G +P++ TF  +L A + L L  
Sbjct: 552 LDYDHVS--WNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHE 609

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGY 270
           +G+++H   ++     D  + NAL+  Y KCGD+     +F R+ ++ D +S+NSM++GY
Sbjct: 610 LGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGY 669

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
           IH+ LL +A D+   M+  G   D    +++L   A  + L  G +VHG  +R  +E D+
Sbjct: 670 IHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDI 729

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
            I ++L+ +Y+K G++D A   F+ MP +++ SWNS+I     H    ++L  F QM+  
Sbjct: 730 VIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQ 789

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G LPDH+TFV +LSAC+H G V  G   F  M E YG++PR+EH++CMV+L GR G +++
Sbjct: 790 GPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNK 849

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHG--NVCMGETAAQKLFELEPDNEHNFELLIKI 502
               +  +M  + + ++W  +L AC      N  +G  AA+ L E+EP N  N+ LL  +
Sbjct: 850 MEDFL-NQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNM 908

Query: 503 YGNAGRLDDVERV 515
           Y + G+ DDV + 
Sbjct: 909 YASGGKWDDVAKT 921



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 210/428 (49%), Gaps = 42/428 (9%)

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
           LI + LL     I + L+ +YA  G I++A  VF  M N+ +    WNS+I+G  +  ++
Sbjct: 414 LIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVT--WNSMITGLDQNKQF 471

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
            +A+  + +M    + P  FT    L +CA LG I VGE++H + ++ G   D  V NAL
Sbjct: 472 LEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNAL 531

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI-HHGLLVEAFDIFRGMILNGFDPD 294
           + +Y +CG + + +  F  + + D +S+NS++         ++EA + F  M+  G+DP+
Sbjct: 532 LALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPN 591

Query: 295 PVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
            V   +ILA   + SL  +G Q+H  VL+R V  D  I N+L+  Y K G +     +F 
Sbjct: 592 RVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFS 651

Query: 352 HMP-QKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
            M  ++D VSWNS+I  +  +    +A+     M + G   D  TF ++LSACA + +++
Sbjct: 652 RMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLE 711

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWG 463
            G  +    V +  +   +   + +V++Y + G ID A         FE  P      W 
Sbjct: 712 RGMEVHGCSV-RACLESDIVIGSALVDMYAKCGRIDYASRF------FEMMPARNLYSWN 764

Query: 464 ALL--YACYLHGNVCMGETAAQKLFELEPD-----------------NE--HNFELLIKI 502
           +++  YA + HG   +   A  KL    PD                 NE   +F+ + +I
Sbjct: 765 SMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEI 824

Query: 503 YGNAGRLD 510
           YG A R++
Sbjct: 825 YGLAPRME 832



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 207/408 (50%), Gaps = 30/408 (7%)

Query: 83  VQNGITVQTETFASLLETCYQLK--AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT-F 139
           V +G       F S++  C +     ++ G+++H L+       +   S+ L+ +Y    
Sbjct: 166 VSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNAL 225

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE----GVEPDQF 195
           G++D A + FD +  R   +   NS+IS Y + G+   A  ++  M++E    G++P+++
Sbjct: 226 GMVDYARRAFDSIWPRNLVSL--NSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEY 283

Query: 196 TFPRVLKACAGL---GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           TF  ++ A   L   GL+ + E++     + GF  D +V +ALV  +AK G I  A+ +F
Sbjct: 284 TFGSLISATCSLANSGLVLL-EQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIF 342

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAIS-------SILAN 304
            ++  ++++S N ++ G +      EA ++F  M  +   +P+   I         +L N
Sbjct: 343 QKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLEN 402

Query: 305 ASLLRIGAQVHGWVLRRG-VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
               R G++VH +++R G +   + I N LI +Y+K G ++ AC +F  M  KD V+WNS
Sbjct: 403 GK--RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNS 460

Query: 364 IIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I    ++    EA+  F++M R  + P + T +S LS+CA LG + VGE+L    + K 
Sbjct: 461 MITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGL-KL 519

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G+   V     ++ LYG  G + E        ++++   V W +L+ A
Sbjct: 520 GLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDH--VSWNSLIGA 565



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 208/454 (45%), Gaps = 32/454 (7%)

Query: 39  SRNRITTF----SSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQ--NGITVQTE 92
           S + + TF    SS P S   PLL N    P         ++ DL  S Q  +      E
Sbjct: 15  SHSSVFTFPRSASSIPHSHHYPLLFNPFTNPLPPSSIPLQVLVDLYKSSQLHHNPVQHDE 74

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
              SL +        +   +LH  +  N    +  + + L+ +YA  G +    +VFD+M
Sbjct: 75  KIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEM 134

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL--I 210
             R   +  W+ LISGY       +A  L+ +M  +G  P+ + F  V++AC   G   +
Sbjct: 135 PLRNLVS--WSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGL 192

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNSMLTG 269
           + G ++H    +  +  D    N L+ MY    G +  AR  FD I  ++L+S NSM++ 
Sbjct: 193 KFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISV 252

Query: 270 YIHHGLLVEAFDIFRGM----ILNGFDPDPVAISSI------LANASLLRIGAQVHGWVL 319
           Y   G  V AFDIF  M    + +G  P+     S+      LAN+ L+ +  Q+   V 
Sbjct: 253 YCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLL-EQLLTRVE 311

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
           + G   DL + ++L+  ++K G +  A  +F  M  ++VVS N +I       +  EA+ 
Sbjct: 312 KSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVE 371

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER----LFSVMVEKYGISPRVEHYACM 432
            F +M +D V  +  +++ +L+A      ++ G+R    + + ++    ++ ++     +
Sbjct: 372 LFMEM-KDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGL 430

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +N+Y + G I++A   +V ++      V W +++
Sbjct: 431 INMYAKCGAINDA--CVVFRLMDNKDSVTWNSMI 462


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 240/448 (53%), Gaps = 11/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  S+L  C  LK VE G ++H L+       N  + + L+ +Y   G + EA
Sbjct: 209 GVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEA 268

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +   M ++      W +LI+GY   G+   A+ L   M+ EGV+P+  +   +L AC 
Sbjct: 269 WLLAKGMDDKDVVT--WTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACG 326

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  +  G+ +H  A+R     +  V  AL++MYAKC     +  VF     K    +N+
Sbjct: 327 SLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNA 386

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
           +L+G+I + L  EA ++F+ M++    PD    +S+L   ++L   +    +H +++R G
Sbjct: 387 LLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSG 446

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD-----VVSWNSIIHAHSKDHEALIY 377
             + L +A+ L+ +YSK G L  A  +F+ +  KD       +  +    H     A+  
Sbjct: 447 FLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKL 506

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F QM + GV P+H+TF S+L AC+H G V  G  LF+ M++++ I   V+HY CM++L G
Sbjct: 507 FNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLG 566

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +++AY++I   M    +  VWGALL AC +H NV +GE AA+  F+LEP+N  N+ 
Sbjct: 567 RAGRLNDAYNLI-RTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKLEPENTGNYV 625

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL K+Y   GR  D ERV  M+ + GL 
Sbjct: 626 LLAKLYAAVGRWGDAERVRDMVNEVGLR 653



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 191/362 (52%), Gaps = 12/362 (3%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH LI T  +  +  + SKL   YA       A  +FD++S    F+  WN+++  Y +
Sbjct: 32  RLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFS--WNAMMRMYVQ 89

Query: 172 LGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
           +G   DA+ L+ +M   G   PD+FT+P V+KAC  L LI VG  +H    +FG+  D F
Sbjct: 90  IGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTF 149

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V N L+ MY   G+   A+ VFD +  + +IS+N+M+ GY  +    +A +++  M+  G
Sbjct: 150 VQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVG 209

Query: 291 FDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            +PD   + S+L    LL+   +G +VH  V  +G   ++ + N+L+ +Y K G++ +A 
Sbjct: 210 VEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAW 269

Query: 348 WLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            L   M  KDVV+W ++I+ +        AL+    M+ +GV P+ ++  SLLSAC  L 
Sbjct: 270 LLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLV 329

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            +  G+ L +  + +  I   V     ++N+Y +    + +Y + +   +   +P  W A
Sbjct: 330 YLNHGKCLHAWAIRQ-KIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAP--WNA 386

Query: 465 LL 466
           LL
Sbjct: 387 LL 388



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 189/362 (52%), Gaps = 9/362 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+  +++ C  L  ++ G+ +H          +  + + LL +Y   G  + A  VFD M
Sbjct: 115 TYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPM 174

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             RT  +  WN++I+GY      EDA+ +Y +M + GVEPD  T   VL AC  L  + +
Sbjct: 175 QERTVIS--WNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVEL 232

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G +VH      GF  +  V NALVDMY KCG + +A  +   + +KD++++ +++ GYI 
Sbjct: 233 GREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYIL 292

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLRRGVEWDLCI 329
           +G    A  +   M   G  P+ V+I+S+L A  SL+ +  G  +H W +R+ +E ++ +
Sbjct: 293 NGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIV 352

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGV 386
             +LI +Y+K    + +  +F    +K    WN+++    ++    EA+  F+QM    V
Sbjct: 353 ETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDV 412

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PDH TF SLL A A L  ++    +   ++ + G   R+E  + +V++Y + G +  A+
Sbjct: 413 QPDHATFNSLLPAYAILADLQQAMNIHCYLI-RSGFLYRLEVASILVDIYSKCGSLGYAH 471

Query: 447 SM 448
            +
Sbjct: 472 QI 473



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 143/269 (53%), Gaps = 12/269 (4%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H   +  G      + + L   YA+C     A  +FD++    L S+N+M+  Y+  
Sbjct: 31  KRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQI 90

Query: 274 GLLVEAFDIFRGMILNGFD-PD----PVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
           G   +A ++F  M+ +G   PD    PV I +   + SL+ +G  +HG   + G + D  
Sbjct: 91  GRPFDALNLFVEMLGSGRTLPDKFTYPVVIKAC-GDLSLIDVGVGIHGQTFKFGYDSDTF 149

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDG 385
           + N+L+ +Y   G+ + A  +FD M ++ V+SWN++I+ + +++   +A+  + +M   G
Sbjct: 150 VQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVG 209

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD  T VS+L AC  L +V++G  + +++ EK G    +     +V++Y + G + EA
Sbjct: 210 VEPDCATVVSVLPACGLLKNVELGREVHTLVQEK-GFWGNIVVRNALVDMYVKCGQMKEA 268

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGN 474
           + ++ + M+ +   V W  L+    L+G+
Sbjct: 269 W-LLAKGMD-DKDVVTWTTLINGYILNGD 295


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 251/450 (55%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ I   + T   LL    +  A       H L+    L  +      L+ +Y+     
Sbjct: 144 LRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLITMYSYLDDP 203

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVL 201
             A +VFD +  R   +  WN+++  Y  +G   +   ++  M +EG V P+  T   VL
Sbjct: 204 GAARKVFDGIPTRDVVS--WNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVL 261

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC   G + +G  V   +       D  V +AL+ MY KCG+I +AR VFD I +KD++
Sbjct: 262 AACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIV 321

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWV 318
           ++N+M+TGY  +G+  EA  +F  M + G  PD + ++ +L+  S    L +G+++ G+ 
Sbjct: 322 AWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYA 381

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            RRG+  ++ +  +L+ +Y+K G LD+A  +F  MP K+V SWN++I     + +  EA+
Sbjct: 382 SRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAI 441

Query: 376 IYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            +F+ M   +G+ PD +TF+ +LSAC H G VK G+R F+ +  ++ I P++EHY+CMV+
Sbjct: 442 QHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVD 501

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L  R+G ++EA+  I EK+  +   V+ GALL AC    NV +GE    ++ +LEP N  
Sbjct: 502 LLARSGHLEEAWDFI-EKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSW 560

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           N+ +  KIY ++ RLDD  ++  ++ +RG+
Sbjct: 561 NYVVSSKIYASSDRLDDSAKMRGLMRERGV 590



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 172/348 (49%), Gaps = 15/348 (4%)

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+    AF +N  I  +A       ++ L+  M    + PD +T P +L A A      +
Sbjct: 112 SHSAPTAFSYNVAIRFFAS-SRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSL 170

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
               H    + G       +++L+ MY+   D   AR VFD I  +D++S+N+M+  Y  
Sbjct: 171 ARAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR 230

Query: 273 HGLLVEAFDIFRGMILNG-FDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLC 328
            G+  E   +FR M+  G   P+ V ++ +LA   +   L +G  V  W     +E D  
Sbjct: 231 VGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSL 290

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + ++L+ +Y K G++ +A  +FD +  KD+V+WN++I  ++++   +EA+  F  M   G
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAG 350

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD +T   +LSAC+ +G++++G  L      + G+   V     +V++Y + G +D+A
Sbjct: 351 MRPDKITLAGVLSACSAVGALELGSEL-DGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
              +  KM  + +   W AL+     +G    G+ A Q  F+L  + E
Sbjct: 410 IE-VFRKMPCK-NVASWNALICGLAFNGR---GDEAIQH-FQLMRNEE 451


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 228/415 (54%), Gaps = 40/415 (9%)

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  +FD+M  R   +  WN++ISGYA+ GE  +A  L+    EE    D FT+  ++  
Sbjct: 222 DARGIFDRMPERDEVS--WNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSG 275

Query: 204 CAGLGLIRVGEKV-----HLDAVRFGFGFDGFV----------------------LNALV 236
               G++    +V       ++V +     G+V                       N ++
Sbjct: 276 YVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMI 335

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
             YA+ GDI +AR  FDR+  +D IS+ +++ GY   G   EA  +F  M  +G   +  
Sbjct: 336 TGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRS 395

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
             +S L   A  + L +G QVHG V++ G+E    + N+L+V+Y K G +D A  +F+ +
Sbjct: 396 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 455

Query: 354 PQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            +K+VVSWN++I  +++     EAL+ FE M++ G+LPD +T V +LSAC+H G V  G 
Sbjct: 456 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT 515

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
             F  M + YGI+   +HY CM++L GRAG +D+A +++ + M FE     WGALL A  
Sbjct: 516 EYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM-KNMPFEPDAATWGALLGASR 574

Query: 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +HGN  +GE AA+ +FE+EPDN   + LL  +Y  +GR  DV R+   + DRG++
Sbjct: 575 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 629



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 179/362 (49%), Gaps = 43/362 (11%)

Query: 31  RRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           R  ++ ++S N  T  S Y ++    LL  Q+ F ++ ++ + +    +   VQNG+  +
Sbjct: 229 RMPERDEVSWN--TMISGYAQNGE--LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 284

Query: 91  TE------------TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
                         ++ +++    Q K ++   +L   +P     +N    + ++  YA 
Sbjct: 285 ARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC----QNVSSWNTMITGYAQ 340

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G I +A   FD+M  R + +  W ++I+GYA+ G  E+A+ L+ +M+ +G   ++ TF 
Sbjct: 341 NGDIAQARNFFDRMPQRDSIS--WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 398

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
             L  CA +  + +G++VH   V+ G     +V NAL+ MY KCG+I  A  VF+ I  K
Sbjct: 399 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 458

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318
           +++S+N+M+ GY  HG   EA  +F  M   G  PD V +  +L+  S        H  +
Sbjct: 459 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS--------HTGL 510

Query: 319 LRRGVEW------DLCI-ANS-----LIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           + +G E+      D  I ANS     +I +  + G+LD A  L  +MP + D  +W +++
Sbjct: 511 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 570

Query: 366 HA 367
            A
Sbjct: 571 GA 572



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 191/437 (43%), Gaps = 79/437 (18%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +FDQM  R   +  WN+++SGYA+ G  ++A  ++ +M  +    +  ++  +L A 
Sbjct: 130 ARLLFDQMPERDVVS--WNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAY 183

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
              G I    ++      +         N ++  Y K   +V AR +FDR+  +D +S+N
Sbjct: 184 VQNGRIEDARRLFESKADWEL----ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 239

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           +M++GY  +G L+EA  +F    +         +S  + N  L        G   +  V 
Sbjct: 240 TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS 299

Query: 325 WDLCIA--------------------------NSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           W+  IA                          N++I  Y+++G + QA   FD MPQ+D 
Sbjct: 300 WNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS 359

Query: 359 VSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SW +II  +++     EAL  F +M+RDG   +  TF S LS CA + ++++G+++   
Sbjct: 360 ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 419

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG-- 473
           +V K G+         ++ +Y + G ID+AY ++ E +E E   V W  ++     HG  
Sbjct: 420 VV-KAGLESGCYVGNALLVMYCKCGNIDDAY-IVFEGIE-EKEVVSWNTMIAGYARHGFG 476

Query: 474 --------------------------NVC----MGETAAQKLFELEPD-----NEHNFEL 498
                                     + C    + +   +  + +  D     N  ++  
Sbjct: 477 KEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTC 536

Query: 499 LIKIYGNAGRLDDVERV 515
           +I + G AGRLDD + +
Sbjct: 537 MIDLLGRAGRLDDAQNL 553



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 166/374 (44%), Gaps = 69/374 (18%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G  D A ++F+ M  R++ +  WN++ISG        D   L  Q+ E+    D  ++  
Sbjct: 63  GQCDSALRLFNSMPRRSSIS--WNAMISGCLS----NDKFYLARQLFEKMPTRDLVSWNV 116

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           ++  C                VR+                    ++  AR +FD++  +D
Sbjct: 117 MISGC----------------VRYR-------------------NLRAARLLFDQMPERD 141

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-QVHGWV 318
           ++S+N+ML+GY  +G + EA +IF  M      P   +IS     A+ ++ G  +    +
Sbjct: 142 VVSWNAMLSGYAQNGYVKEAKEIFDEM------PCKNSISWNGMLAAYVQNGRIEDARRL 195

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378
                +W+L   N ++  Y K  +L  A  +FD MP++D VSWN++I  ++++ E L+  
Sbjct: 196 FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE-LLEA 254

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           +++  +  + D  T+ +++S     G +    R+F  M EK  +S     +  ++  Y +
Sbjct: 255 QRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQ 309

Query: 439 AGLIDEAYSMIVEKMEFEASPV----VWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
              +D+A  +      FEA P      W  ++     +G++      A+  F+  P  + 
Sbjct: 310 CKRMDQAREL------FEAMPCQNVSSWNTMITGYAQNGDI----AQARNFFDRMPQRDS 359

Query: 495 -NFELLIKIYGNAG 507
            ++  +I  Y  +G
Sbjct: 360 ISWAAIIAGYAQSG 373



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 23/174 (13%)

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFE 379
           V+W++ I N +     ++G+ D A  LF+ MP++  +SWN++I    ++ K + A   FE
Sbjct: 50  VKWNIAITNHM-----RNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFE 104

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M       D +++  ++S C    +++    LF  M E+  +S     +  M++ Y + 
Sbjct: 105 KMP----TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVS-----WNAMLSGYAQN 155

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           G + EA   I ++M  + S + W  +L A   +G +      A++LFE + D E
Sbjct: 156 GYVKEAKE-IFDEMPCKNS-ISWNGMLAAYVQNGRI----EDARRLFESKADWE 203


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 251/450 (55%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ I   + T   LL    +  A       H L+    L  +      L+ +Y+     
Sbjct: 144 LRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLITMYSYLDDP 203

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVL 201
             A +VFD +  R   +  WN+++  Y  +G   +   ++  M +EG V P+  T   VL
Sbjct: 204 GAARKVFDGIPTRDVVS--WNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVL 261

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC   G + +G  V   +       D  V +AL+ MY KCG+I +AR VFD I +KD++
Sbjct: 262 AACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIV 321

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWV 318
           ++N+M+TGY  +G+  EA  +F  M + G  PD + ++ +L+  S    L +G+++ G+ 
Sbjct: 322 AWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYA 381

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            RRG+  ++ +  +L+ +Y+K G LD+A  +F  MP K+V SWN++I     + +  EA+
Sbjct: 382 SRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAI 441

Query: 376 IYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            +F+ M   +G+ PD +TF+ +LSAC H G VK G+R F+ +  ++ I P++EHY+CMV+
Sbjct: 442 QHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVD 501

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L  R+G ++EA+  I EK+  +   V+ GALL AC    NV +GE    ++ +LEP N  
Sbjct: 502 LLARSGHLEEAWDFI-EKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSW 560

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           N+ +  KIY ++ RLDD  ++  ++ +RG+
Sbjct: 561 NYVVSSKIYASSDRLDDSAKMRGLMRERGV 590



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 172/348 (49%), Gaps = 15/348 (4%)

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+    AF +N  I  +A       ++ L+  M    + PD +T P +L A A      +
Sbjct: 112 SHSAPTAFSYNVAIRFFAS-SRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSL 170

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
               H    + G       +++L+ MY+   D   AR VFD I  +D++S+N+M+  Y  
Sbjct: 171 ARAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR 230

Query: 273 HGLLVEAFDIFRGMILNG-FDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLC 328
            G+  E   +FR M+  G   P+ V ++ +LA   +   L +G  V  W     +E D  
Sbjct: 231 VGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSL 290

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + ++L+ +Y K G++ +A  +FD +  KD+V+WN++I  ++++   +EA+  F  M   G
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAG 350

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD +T   +LSAC+ +G++++G  L      + G+   V     +V++Y + G +D+A
Sbjct: 351 MRPDKITLAGVLSACSAVGALELGSEL-DGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
              +  KM  + +   W AL+     +G    G+ A Q  F+L  + E
Sbjct: 410 IE-VFRKMPCK-NVASWNALICGLAFNGR---GDEAIQH-FQLMRNEE 451


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 259/482 (53%), Gaps = 41/482 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ GI     T+ S+L+ C +   +  G ++H  I  + ++ +  + + L+ +Y   G +
Sbjct: 193 VKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKV 252

Query: 143 DEAHQVFDQMSNRTAFAFP---------------------------------WNSLISGY 169
             A  +FD++  R A ++                                  WN++  GY
Sbjct: 253 GIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGY 312

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
              G Y+ A+ L  QM + G   D       L AC+ +G  ++G+++H  A+R  FG   
Sbjct: 313 LRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVD 372

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            V NAL+ MY++C D+  A  +F  +  K LI++NS+++G  H     EA  + R M+L 
Sbjct: 373 TVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLF 432

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVVYSKDGKLDQ 345
           G +P+ V I+S+L   A  + L+ G + H ++ RR    D L + N+L+ +Y++ GK+ +
Sbjct: 433 GIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLE 492

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           A  +FD + ++D +++ S+I  +    E   AL  FE+M    + PDH+T +++LSAC+H
Sbjct: 493 ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSH 552

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G V  G+ LF  M   YG++P +EH+ACM +L+GRAGL+++A   I+  M ++ +P +W
Sbjct: 553 SGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKE-IIRNMPYKPTPAMW 611

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
             L+ AC +H N  +GE AA+KL E++P+N   + L+  +Y  AG  + + +V   + D 
Sbjct: 612 ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDL 671

Query: 523 GL 524
           G+
Sbjct: 672 GV 673



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 157/557 (28%), Positives = 256/557 (45%), Gaps = 92/557 (16%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALD-----SIIQDLESSVQNGITVQTETFASLLE 99
           TF+S   S    LLT+ K F  ++   LD     S+I+   SS    + V     +SLL 
Sbjct: 52  TFTSVDASMIDSLLTSLKEF-TSRGNLLDAFKTVSLIRLHASSASQDLIVHP--ISSLLS 108

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           +C  +K++  G +LH  I +    ++  +  KL+  Y+ F L+ +AH V  + SN     
Sbjct: 109 SCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAH-VITENSN-ILHP 166

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH-- 217
           FPWN LIS Y   G  + A++ Y QM ++G+ PD FT+P VLKAC     +  G++VH  
Sbjct: 167 FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHES 226

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
           ++A R  +     V NAL+ MY KCG +  AR +FD+I  +D +S+NSM++ Y   G+  
Sbjct: 227 INASRIKWSL--IVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWN 284

Query: 278 EAFDIFRGM----------ILN-------------------------GFDPDPVAISSIL 302
           EAF++F  M          I N                         G   D VA+   L
Sbjct: 285 EAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGL 344

Query: 303 ANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
              S +   ++G ++H + +R        + N+LI +YS+   L  A  LF  M  K ++
Sbjct: 345 GACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLI 404

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           +WNSII       +  EA     +M   G+ P+++T  S+L  CA + +++ G+     M
Sbjct: 405 TWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYM 464

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWG---------- 463
             +      +  +  +V++Y R+G + EA   + M+ E+ +   + ++ G          
Sbjct: 465 TRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAA 524

Query: 464 --------------------ALLYACYLHGNVCMGETAAQK---LFELEPDNEHNFELLI 500
                               A+L AC   G V  G+   +K   L+ L P  EH F  + 
Sbjct: 525 LKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEH-FACMT 583

Query: 501 KIYGNAGRLDDVERVER 517
            ++G AG L+  + + R
Sbjct: 584 DLFGRAGLLNKAKEIIR 600



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 168/407 (41%), Gaps = 58/407 (14%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           ++ R IP    +  K +  + +   A+   ++ A + F  +      A   +SL++   E
Sbjct: 16  QIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVD-----ASMIDSLLTSLKE 70

Query: 172 L---GEYEDAIAL--YFQMEEEGVEPDQFTFP--RVLKACAGLGLIRVGEKVHLDAVRFG 224
               G   DA       ++       D    P   +L +C  +  +  G ++H   +  G
Sbjct: 71  FTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLG 130

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F     ++  LV  Y+    +V A  + +         +N +++ Y+ +G   +A   ++
Sbjct: 131 FEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYK 190

Query: 285 GMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M+  G  PD     S+L        L  G +VH  +    ++W L + N+LI +Y K G
Sbjct: 191 QMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCG 250

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAH-----------------SKDHE----------- 373
           K+  A  LFD +P++D VSWNS+I  +                 ++D E           
Sbjct: 251 KVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAG 310

Query: 374 ----------ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGI 422
                     AL    QM + G   D +  +  L AC+H+G  K+G+ + S  +   +G 
Sbjct: 311 GYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGE 370

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
              V++   ++ +Y R   +  AY ++ + ME + S + W +++  C
Sbjct: 371 VDTVKN--ALITMYSRCKDLKHAY-LLFQLMEAK-SLITWNSIISGC 413


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 225/381 (59%), Gaps = 13/381 (3%)

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACA 205
            +FDQ+ + TAF +  NSLI      G    A+A+Y +M   G   P+ FT    LKACA
Sbjct: 130 NLFDQIPDPTAFCY--NSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACA 186

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYN 264
            +     G ++H  A+R G     +V   L+++YAKC  +  ARTVFD + G+K+L++++
Sbjct: 187 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 246

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +M++GY   G++ EA  +FR M   G +PD V + S++   A A  L +G  VH ++ R+
Sbjct: 247 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 306

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYF 378
           G+  DL ++ +LI +Y+K G +++A  +FD M +KD  +W+++I     H    +AL  F
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 366

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M    V P+++TF+ +LSACAH G V+ G R +S+M +  GI P +E+Y CMV+L  R
Sbjct: 367 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCR 425

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           +GL+D+AYS ++  M    + V+W  LL AC     + + E+A ++L ELEP N  N+ L
Sbjct: 426 SGLLDDAYSFVI-GMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVL 484

Query: 499 LIKIYGNAGRLDDVERVERML 519
           L  +Y +  + D V  + R +
Sbjct: 485 LSNLYASNSQWDRVSYLRRKM 505



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 37/348 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A  L+ C  + A   G +LH       L  +  + + LL LYA    +  A  VFD M
Sbjct: 177 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 236

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +        W++++SGY+ +G   +A+ L+ +M+  GVEPD+ T   V+ ACA  G + +
Sbjct: 237 AGDKNL-VAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDL 295

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH    R G   D  +  AL+DMYAKCG I +AR VFD +  KD  ++++M+ G+  
Sbjct: 296 GKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAI 355

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HGL+ +A  +F  M+     P+ V    +L   A++ L+  G +    +   G++  +  
Sbjct: 356 HGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMEN 415

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389
              ++ +  + G LD A      MP    VS NS+I                        
Sbjct: 416 YGCMVDLLCRSGLLDDAYSFVIGMP----VSPNSVI------------------------ 447

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
              + +LL AC     + + E     ++E    +P  E+Y  + NLY 
Sbjct: 448 ---WRTLLVACKSSNRIDIAESATKRLLELEPHNP--ENYVLLSNLYA 490



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  S++  C +  A++ G  +H  I    +  +  +S+ L+ +YA  GLI+ A
Sbjct: 272 GVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERA 331

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD M  +   A  W+++I G+A  G  EDA+ L+ +M E  V P+  TF  VL ACA
Sbjct: 332 RGVFDAMVEKDTKA--WSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACA 389

Query: 206 GLGLIRVGEK 215
             GL+  G +
Sbjct: 390 HSGLVEDGRR 399


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 166/552 (30%), Positives = 270/552 (48%), Gaps = 49/552 (8%)

Query: 16  VIIHCGSKNKRSRKQRRQKQQQISRNRITTFSSYPKS-SPTPLLTNQKAFPKTKLQALDS 74
            ++H    +  +R         + R+ + + S  P   S T LL+     P   ++    
Sbjct: 121 TVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQ 180

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +   +  S   G+   +    +L   C  L+A     K+   +P     K+    + ++ 
Sbjct: 181 LQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPD----KDALTWTTMVV 236

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
            Y   G +  A  VF+++  +  F   WN++ISGY   G   +A  L+ +M  E V  D+
Sbjct: 237 GYVRRGDVGAARSVFEEVDVK--FDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDE 294

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG----FVLNALVDMYAKCGDIVKART 250
           FTF  VL ACA  G    G+ VH    R    F       V NALV +Y+KCG+I  AR 
Sbjct: 295 FTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARR 354

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR---------------GMILNGFDPDP 295
           +FD + +KD++S+N++L+GY+    L +A ++F                G +  GF  D 
Sbjct: 355 IFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDA 414

Query: 296 VAI-----------------SSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
           + +                  +I A   L  L+ G Q+HG +++ G E      N+LI +
Sbjct: 415 LKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITM 474

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           Y++ G + +A  +F  MP  D VSWN++I A   H    EAL  F++M  +G+ PD ++F
Sbjct: 475 YARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISF 534

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +++L+AC H G V  G + F  M   +GI P  +HY  +++L GRAG I EA  +I + M
Sbjct: 535 LTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLI-KTM 593

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            FE +P +W A+L  C   G++ +G  AA +LF++ P ++  + LL   Y  AGR  D  
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAA 653

Query: 514 RVERMLVDRGLE 525
           RV +++ DRG++
Sbjct: 654 RVRKLMRDRGVK 665



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 181/424 (42%), Gaps = 81/424 (19%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ L+  YA  G +  A   FD +          N++IS YA       A+A++  +   
Sbjct: 91  ATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 189 G-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF--VLNALVDMYAKC--- 242
           G + PD ++F  +L A   L  I V     L       G  G   V NALV +Y KC   
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 243 -------------------------------GDIVKARTVFDRIGNKDLISYNSMLTGYI 271
                                          GD+  AR+VF+ +  K  + +N+M++GY+
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYV 270

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG----VE 324
           H G++VEAF++FR M+L     D    +S+L   ANA     G  VHG + R       E
Sbjct: 271 HSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPE 330

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-------------- 370
             L + N+L+ +YSK G +  A  +FD+M  KDVVSWN+I+  + +              
Sbjct: 331 AALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEM 390

Query: 371 --------------------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
                                 +AL  F +M  + V P   T+   +SAC  LGS+K G+
Sbjct: 391 PYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGK 450

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
           +L   +V+  G          ++ +Y R G + EA  M +     ++  V W A++ A  
Sbjct: 451 QLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDS--VSWNAMISALG 507

Query: 471 LHGN 474
            HG+
Sbjct: 508 QHGH 511


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 252/490 (51%), Gaps = 81/490 (16%)

Query: 112 KLHR--LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           KLH   LI  NL   N  +  KL+R YA  G       +FD+++++    F  N +I  Y
Sbjct: 56  KLHSKILIDQNL-HPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFF--NVMIRSY 112

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH------------ 217
              G Y+DA+ ++  M  +G  PD +T+P VLKAC+  G + VG ++H            
Sbjct: 113 VNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNL 172

Query: 218 ---------------LDAVRFGF----GFDGFVLNALVDMYAK----------------- 241
                          LDA R       G D    N++V  YA+                 
Sbjct: 173 YIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDL 232

Query: 242 --------------------CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
                               C +++  + +F ++  K LIS+N M+  Y+++ +  EA D
Sbjct: 233 KLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVD 292

Query: 282 IFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           ++  M ++G +PD V+ISS+L    + S   +G ++H +V R+ +  +L + N+LI +Y+
Sbjct: 293 LYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYA 352

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVS 395
           K G L +A  +FD M  +DVVSW S+I A+    +  +A+  F++M   G  PD + FVS
Sbjct: 353 KCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVS 412

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +L+AC+H G V  G   F++M E YGI+P +EHY CMV+L GRAG IDEAY +   +M  
Sbjct: 413 VLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHL-TRQMPM 470

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           E +  VWG+LL AC ++ ++ +   AA  LF+L P+    + LL  IY  AGR  DVE V
Sbjct: 471 EPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETV 530

Query: 516 ERMLVDRGLE 525
             ++  +G++
Sbjct: 531 RSIMNSKGIK 540


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 251/450 (55%), Gaps = 11/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++ I   + T   LL    +  A       H L+    L  +      L+ +Y+     
Sbjct: 144 LRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLITMYSYLDDP 203

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVL 201
             A +VFD +  R   +  WN+++  Y  +G   +   ++  M +EG V P+  T   VL
Sbjct: 204 GAARKVFDGIPTRDVVS--WNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVL 261

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            AC   G + +G  V   +       D  V +AL+ MY KCG+I +AR VFD I +KD++
Sbjct: 262 AACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIV 321

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWV 318
           ++N+M+TGY  +G+  EA  +F  M + G  PD + ++ +L+  S    L +G+++ G+ 
Sbjct: 322 AWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYA 381

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
            RRG+  ++ +  +L+ +Y+K G LD+A  +F  MP K+V SWN++I     + +  EA+
Sbjct: 382 SRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAI 441

Query: 376 IYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
            +F+ M   +G+ PD +TF+ +LSAC H G VK G+R F+ +  ++ I P++EHY+CMV+
Sbjct: 442 QHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVD 501

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L  R+G ++EA+  I EK+  +   V+ GALL AC    NV +GE    ++ +LEP N  
Sbjct: 502 LLARSGHLEEAWDFI-EKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSW 560

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           N+ +  KIY ++ RLDD  ++  ++ +RG+
Sbjct: 561 NYVVSSKIYASSDRLDDSAKMRGLMRERGV 590



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 172/348 (49%), Gaps = 15/348 (4%)

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+    AF +N  I  +A       ++ L+  M    + PD +T P +L A A      +
Sbjct: 112 SHSAPTAFSYNVAIRFFAS-SRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSL 170

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
               H    + G       +++L+ MY+   D   AR VFD I  +D++S+N+M+  Y  
Sbjct: 171 ARAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR 230

Query: 273 HGLLVEAFDIFRGMILNG-FDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLC 328
            G+  E   +FR M+  G   P+ V ++ +LA   +   L +G  V  W     +E D  
Sbjct: 231 VGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSL 290

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           + ++L+ +Y K G++ +A  +FD +  KD+V+WN++I  ++++   +EA+  F  M   G
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAG 350

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + PD +T   +LSAC+ +G++++G  L      + G+   V     +V++Y + G +D+A
Sbjct: 351 MRPDKITLAGVLSACSAVGALELGSEL-DGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
              +  KM  + +   W AL+     +G    G+ A Q  F+L  + E
Sbjct: 410 IE-VFRKMPCK-NVASWNALICGLAFNGR---GDEAIQH-FQLMRNEE 451


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 241/448 (53%), Gaps = 13/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI+  + T   +L  C QL  +  G ++H LI    L  +  + + L+ +Y   G  + +
Sbjct: 243 GISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETS 302

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            Q+F +  N       W S++   A+ G   +A+  + +   +   PD       L+AC+
Sbjct: 303 LQIFKRSQNHNLVM--WGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACS 360

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L L   G  +H  A++ GF  D FV  ALVD Y KCGD+  A+ VF  +  +DL+S+N+
Sbjct: 361 FLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNA 420

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRG 322
           +++G+  +    EA   FR M      P+ V ++ IL+   + S++ +  +VH ++LR  
Sbjct: 421 LISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHW 480

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
            E +  + NSLI  Y+K G +  +  +F+ +P ++ V+WNSI+     H +  E    FE
Sbjct: 481 FETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFE 540

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +M+   + PDH TF SLLS+C+H G V  G + F+ M+E Y + PRVE Y CMV+L GRA
Sbjct: 541 KMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRA 600

Query: 440 GLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           G +++AY +I   M    SP   +WG+LL +C  HGN  + E  A  +FEL+  +     
Sbjct: 601 GNLNQAYDLI---MSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRV 657

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           LL  +Y ++G L++V RV   +   GL+
Sbjct: 658 LLANLYEDSGNLNEVFRVRTDIKQMGLK 685



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 214/439 (48%), Gaps = 14/439 (3%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           L +C  +K + HG+++H  +    +  ++ + S L+ +Y   G I  A  VF+++ +   
Sbjct: 149 LSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNEL 208

Query: 158 FA---FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
                  WN +I GY        A+ L+ +M E G+ PD  T   VL  C+ L  + VG+
Sbjct: 209 VGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGK 268

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   +  G   D  V  AL++MY KCGD   +  +F R  N +L+ + S++     +G
Sbjct: 269 QIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNG 328

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIAN 331
              EA + F   +L+   PDPV + + L   S L +   G  +HG+ ++ G + D+ +  
Sbjct: 329 YPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGG 388

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLP 388
           +L+  Y K G ++ A  +F  +  +D+VSWN++I   +++    EAL  F  M+   + P
Sbjct: 389 ALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKP 448

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           + +T   +LS C HL  + + + +   ++  +  +  + + + +++ Y + G I  + + 
Sbjct: 449 NTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNS-LISAYAKCGDIHSSRT- 506

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-NFELLIKIYGNAG 507
           + EK+    + V W ++L    +HG         +K+ E     +H  F  L+    ++G
Sbjct: 507 VFEKLPVR-NEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSG 565

Query: 508 RLD-DVERVERMLVDRGLE 525
           ++D   +    M+ D  LE
Sbjct: 566 KVDAGWKYFNSMMEDYNLE 584



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 189/386 (48%), Gaps = 18/386 (4%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F  L++    L  V  G ++H  +      ++  + + LL +Y   G    A  +F++M 
Sbjct: 42  FPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERME 101

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE--GVEPDQFTFPRVLKACAGLGLIR 211
            R + +  WN++ISG+ + G+Y  ++ ++ +M +E  G   ++      L +CA +  + 
Sbjct: 102 ERDSVS--WNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLT 159

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS-----YNSM 266
            G ++H   V+ G   D F+++AL++MY KCGDI  A  VF+RI + +L+      +N M
Sbjct: 160 HGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVM 219

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGV 323
           + GY+ +  L  A ++F  M+  G  PD   +  +L   S    L +G Q+HG +L  G+
Sbjct: 220 ILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGL 279

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQ 380
           + D+ +  +L+ +Y K G  + +  +F      ++V W S++   +++   +EAL +F +
Sbjct: 280 DDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSE 339

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
              D   PD +  ++ L AC+ L     G  +    + K G    V     +V+ YG+ G
Sbjct: 340 FMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAI-KMGFDSDVFVGGALVDFYGKCG 398

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALL 466
             D  Y+  V         V W AL+
Sbjct: 399 --DMEYAQQVFYGLSTRDLVSWNALI 422



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 174/325 (53%), Gaps = 17/325 (5%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF-PRVLKACAGLGLIRVGEKVHLDAV 221
           N +I    E G +EDAI +Y    E G   ++F F P ++KA  GL  +  G+++H   +
Sbjct: 7   NRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLL 66

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           +FGF  D FV N+L+ MY KCG    A  +F+R+  +D +S+N+M++G+   G  V++  
Sbjct: 67  KFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLV 126

Query: 282 IFRGMI--LNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVV 336
           +FR M+    G   + VA  + L++ + ++    G ++HG+++++GV+ D  + ++LI +
Sbjct: 127 MFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEM 186

Query: 337 YSKDGKLDQACWLFDHMPQKDVVS-----WNSIIHAHSKDHE---ALIYFEQMERDGVLP 388
           Y K G +  A  +F+ +   ++V      WN +I  +  +     AL  F +M   G+ P
Sbjct: 187 YMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISP 246

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D  T V +L  C+ L  + VG+++  +++   G+   V     ++ +Y + G  D   S+
Sbjct: 247 DSSTVVVVLVLCSQLLDLAVGKQIHGLIL-GLGLDDDVRVGTALMEMYFKCG--DPETSL 303

Query: 449 IVEKMEFEASPVVWGALLYACYLHG 473
            + K     + V+WG+++  C  +G
Sbjct: 304 QIFKRSQNHNLVMWGSVMLNCAQNG 328


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 247/448 (55%), Gaps = 16/448 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     TF  +++ C  L+  E GI++H+ +     +    IS+ L+ +Y      + +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            QVFD+M ++ A +  W+++I    +    ++  +L+ QM  EG  P +     +L A A
Sbjct: 65  RQVFDEMPDKNAVS--WSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA---ILNAMA 119

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +      + V+   V  G  FD  V +A   M+A+CG +  AR +FD I +KDL+++ +
Sbjct: 120 CVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWAT 179

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRG 322
            +  Y+   + +EA  + + M+L G  PD + +  ++   S L   ++   VHG ++  G
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTG 238

Query: 323 VEWD--LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
             ++  L +  +LI +Y K G L  A  +FD M ++++++W+++I     H    EAL  
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNL 298

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F+QM +  V PDH+TFVS+LSAC+H G V  G   F+ M   +G++PR EHYACMV++ G
Sbjct: 299 FDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILG 357

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG +DEA   I E+M    +  VWGALL AC +H NV + E  A+ LF+L+P N   + 
Sbjct: 358 RAGKLDEACDFI-ERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYV 416

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L  IY   G+  + + +  ++ +RG++
Sbjct: 417 ILYNIYTLTGKRKEADSIRTLMKNRGVK 444


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 236/403 (58%), Gaps = 12/403 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S +L LYA  G +D+A +VFD+M  R      W+++++G+   G+   AI +Y +M  
Sbjct: 140 VCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVT--WSTMVTGFVNAGQPVQAIEMYMRMRR 197

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           +G+E D+     V++ACA  G  R+G  VH   +R     D  +  +LVDMYAK G   +
Sbjct: 198 DGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQ 257

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD--PVAISSILA-- 303
           AR VF+ + +++ +S++++++    +G   EA  +FR M ++G  P+  PV + ++LA  
Sbjct: 258 ARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPV-VGALLACS 316

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           +  LL++G  +HG++LR  +E D  +  ++I +YSK G L  A  LFD +  +D++SWN 
Sbjct: 317 DLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNV 375

Query: 364 IIH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I    AH +  +AL  F++M+R+ V PDH TF SLLSA +H G V+ G+  F+ MV +Y
Sbjct: 376 MIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEY 435

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           GI P  +H  C+V+L  R+GL++EA  + V  +  + +  +  ALL  C  +  + +GE+
Sbjct: 436 GIEPGEKHLVCIVDLLARSGLVEEANGL-VASLHSKPTISILVALLSGCLNNNKLELGES 494

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
            A+K+ EL+P +     L+  +Y  A     V  V +++ D G
Sbjct: 495 TAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHG 537



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 218/427 (51%), Gaps = 24/427 (5%)

Query: 97  LLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           LL +C  L+ +    +LH L I ++    +  +SS L   YA  G +  A          
Sbjct: 9   LLSSCAALRTL---TRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTS 65

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
            +    WN+L++ ++      +A+ + F+       PD  TF   L ACA LG +  GE 
Sbjct: 66  PSSIPAWNALLAAHSRGASPHEALRV-FRALPPAARPDSTTFTLALSACARLGDLATGEV 124

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           V   A   G+G D FV ++++++YAKCG +  A  VFDR+  +D +++++M+TG+++ G 
Sbjct: 125 VTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQ 184

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
            V+A +++  M  +G + D V I  ++   A     R+GA VHG++LR  ++ D+ I+ S
Sbjct: 185 PVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTS 244

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGVLPD 389
           L+ +Y+K+G  DQA  +F+ MP ++ VSW+++I     +    EAL  F  M+  G+ P+
Sbjct: 245 LVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPN 304

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
               V  L AC+ LG +K+G+ +   ++    +   V     ++++Y + G +  A  M+
Sbjct: 305 SGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVG--TAVIDMYSKCGSLSSA-QML 361

Query: 450 VEKMEFEASPVVWGALLYACYLHGNVCMGETA-----AQKLFELEPDNEHNFELLIKIYG 504
            +K+      + W  ++  C  HG    G  A       K  E+ PD+   F  L+    
Sbjct: 362 FDKV-VSRDLISWNVMIACCGAHGR---GRDALSLFQEMKRNEVRPDHA-TFASLLSALS 416

Query: 505 NAGRLDD 511
           ++G +++
Sbjct: 417 HSGLVEE 423



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 11/248 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G+         +++ C        G  +H  +  + ++ +  IS+ L+ +YA  GL D
Sbjct: 197 RDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFD 256

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VF+ M +R   +  W++LIS  A+ G  ++A+ L+  M+  G+ P+       L A
Sbjct: 257 QARRVFELMPHRNDVS--WSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLA 314

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ LGL+++G+ +H   +R     D  V  A++DMY+KCG +  A+ +FD++ ++DLIS+
Sbjct: 315 CSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISW 373

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N M+     HG   +A  +F+ M  N   PD    +S+L+  S        H  ++  G 
Sbjct: 374 NVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALS--------HSGLVEEGK 425

Query: 324 EWDLCIAN 331
            W  C+ N
Sbjct: 426 FWFNCMVN 433


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 232/465 (49%), Gaps = 74/465 (15%)

Query: 132 LLRLYATF-GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG- 189
           LL   ATF G +  A +VFD +     F    N+++ GYA  G   DA A+Y +M E   
Sbjct: 38  LLSCVATFRGRMGYARKVFDGIPRPDLFMH--NAMVRGYAHAGAPGDAFAVYRRMTEASR 95

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI---- 245
           + PD FTF  +L+ACAGL   R G +VH   V+ GF  D +V NAL++M+AKCGD+    
Sbjct: 96  LRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVAS 155

Query: 246 ---------------------------VKARTVFDRIGNKDLISYNSML----------- 267
                                        AR +FD   +KD++ +N ML           
Sbjct: 156 VLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMEN 215

Query: 268 --------------------TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
                               TGY   G+L  A ++F  M   G+ PD   I S+L   AN
Sbjct: 216 ARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCAN 275

Query: 305 ASLLRIGAQVHGWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
             LL  G  +H  +      W  + + N+L+ +Y+K G L  A   F+ M   DV +WNS
Sbjct: 276 TGLLDAGRMIHHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNS 335

Query: 364 IIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I     H +  +++ +F++M    + P+ ++F+ +L AC+H G V+ G++ F +M ++Y
Sbjct: 336 VIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRY 395

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480
           GI P   HY+C+V++ GRAGL+DEAY+ IV  M  E S VVW  LL AC  HGN+ +G+ 
Sbjct: 396 GIEPNARHYSCIVDMLGRAGLLDEAYA-IVSNMRCEPSAVVWRTLLGACRTHGNMTLGKL 454

Query: 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             +KL  +  D   ++ LL  IY ++G    VE   R +  RG+ 
Sbjct: 455 VREKLLNMNEDASADYVLLSGIYASSGEWLGVETERRSMDRRGIR 499


>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 1157

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 242/453 (53%), Gaps = 18/453 (3%)

Query: 85   NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID- 143
            +G  V+     SLL+ C  +K   H  ++H  I  + L+ +  + ++L++  +     D 
Sbjct: 658  SGAQVERTPCLSLLKLCSSIK---HLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDL 714

Query: 144  -EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
              A  + D   +      PWN LI GYA+    +DA+ +Y  M  EG+ P+  TFP +LK
Sbjct: 715  SYAQSILDHSVH--PVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLK 772

Query: 203  ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
            ACA     + G++VH++ +++G   D +V N LV+ Y  C  I+ A  VFD +  + ++S
Sbjct: 773  ACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVS 832

Query: 263  YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVL 319
            +N+++T  +    L EA   F  M   GF+PD    V +  I A    L +G  +H  V+
Sbjct: 833  WNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVI 892

Query: 320  RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALI 376
             RG+  +  +  +L+ +Y+K G +  A  +FD M +K+V +W+++I     H    E L 
Sbjct: 893  ERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLE 952

Query: 377  YFEQMERDGVL-PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F  M R  ++ P+++TF+ +L AC+H G V  G R F  M   YGI P + HY  MV++
Sbjct: 953  LFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAMVDI 1012

Query: 436  YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH---GNVCMGETAAQKLFELEPDN 492
             GRAGL+ EAY+ I  KM F+  P+VW  LL AC +H    +  +     ++L ELEP  
Sbjct: 1013 LGRAGLLKEAYNFIT-KMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELEPRR 1071

Query: 493  EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              NF ++  +Y +AG  +   +V R++ D GL+
Sbjct: 1072 SGNFVMVANMYADAGMWEKAAKVRRVMRDGGLK 1104


>gi|224080943|ref|XP_002306238.1| predicted protein [Populus trichocarpa]
 gi|222855687|gb|EEE93234.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 245/433 (56%), Gaps = 22/433 (5%)

Query: 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP 161
           YQ K +   I L     +N L  N  + + LL  Y+  G + EA +VFD+M  R   +  
Sbjct: 23  YQAKQINAQIVL-----SNYL-SNVTLQTDLLLAYSKSGFLLEARKVFDRMPERNMHS-- 74

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN ++S YA+   Y DAI ++ +  + G  PD +T P + KA AG+G   +G  +H   +
Sbjct: 75  WNIMMSSYAQNYCYSDAICIFDEFLKMGFRPDHYTLPPLFKAVAGVGDCYLGFVLHGWVI 134

Query: 222 RFGFGFDGFVL--NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           R   GF+G+V+  ++++D Y K G +V+A+ VF  +  +D   +N M++G+   G  VEA
Sbjct: 135 R--LGFEGYVVVGSSVLDFYLKGGKLVEAKRVFSNMLWRDCGVWNLMISGFGRAGFYVEA 192

Query: 280 FDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRRGV-EWDLCIANSLI 334
             + R M+      D + + SIL        L++ G ++HG V++  +   D+ I+NSLI
Sbjct: 193 LSLVRNMVEEEEKLDALVVPSILNACGGEGDLMK-GKEIHGRVVKSTLFNVDVVISNSLI 251

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL 391
            +Y++ G L+ +  +F +M   +VV+W ++I     H +  E+L  F++M+  G+ P+ +
Sbjct: 252 DMYARCGCLNDSEKVFRNMRSLNVVTWTTMISCYGVHGRAEESLEVFKKMKGFGLKPNPV 311

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           T  ++L++C+H G +  G R+F  M   YG  P VEHYACMV+L GR G ++EA  + V+
Sbjct: 312 TLTAVLASCSHSGLIDEGRRIFYSMQSHYGFEPSVEHYACMVDLLGRFGYLEEALGL-VQ 370

Query: 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           +M+ EA+  VWGALL  C +H NV +GE AA  LFELEP N  N+  L  IY + G  D 
Sbjct: 371 RMKLEATASVWGALLGGCVMHKNVNIGEIAAHCLFELEPSNPGNYIALCYIYKSHGISDG 430

Query: 512 VERVERMLVDRGL 524
           +      + + GL
Sbjct: 431 ITITRAKMRELGL 443


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 245/448 (54%), Gaps = 10/448 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     TF+++L     +  +  G ++H L+       N  +++ LL  Y+    +D
Sbjct: 234 RKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLV-ARATSSNVFVNNSLLDFYSKCDCLD 292

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           E  ++F +M  R   ++  N +I+GYA        + L+ +M+    +     +  +L  
Sbjct: 293 EMKKLFHEMIERDNVSY--NVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSV 350

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
              +  I +G+++H   V  G   +  V NAL+DMY+KCG +  A+T F    +K  +S+
Sbjct: 351 AGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSW 410

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
            +M+TG + +G   EA  +F GM   G  PD    SS +   +N +++ +G Q+H +++R
Sbjct: 411 TAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIR 470

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIY 377
            G    +   ++L+ +Y+K G LD+A   FD MP+++ +SWN++I A++   +   A+  
Sbjct: 471 SGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKM 530

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           FE M   G  PD +TF+S+LSAC+H G  +   + F +M  +YGISP  EHY+C+++  G
Sbjct: 531 FEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLG 590

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           R G  D+   M+ E M FE  P++W ++L++C  HGN  +   AA+KLF +   +   + 
Sbjct: 591 RVGRFDKVQEMLGE-MPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYV 649

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L  I+  AG+ +D   V++++ DRGL 
Sbjct: 650 ILSNIFAKAGKWEDAAGVKKIMRDRGLR 677



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 196/441 (44%), Gaps = 39/441 (8%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLL------------RKNKGISSKLLRLYATFGLI 142
           A +++T +        + LH LI +  L            R N    +++L  Y+  G +
Sbjct: 23  ARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQL 82

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAEL--GEYEDAIALYFQMEEEGVEPDQFTFPRV 200
             AH +F         A  W  +I  +A        DA++L+  M  EGV PD+ T   V
Sbjct: 83  SAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATV 142

Query: 201 LK---ACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIG 256
           L    A  G     +   +H  A++ G      V+ N L+D Y K G +  AR VF  + 
Sbjct: 143 LNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMP 202

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQ 313
           ++D ++YN+M+ G    G   EA D+F  M   G        S++L  A+    L +G Q
Sbjct: 203 HRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQ 262

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE 373
           VHG V  R    ++ + NSL+  YSK   LD+   LF  M ++D VS+N +I  ++ +  
Sbjct: 263 VHGLVA-RATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRC 321

Query: 374 ALI---YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
           A I    F +M+        L + SLLS    +  + +G+++ + +V   G+S       
Sbjct: 322 ASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLV-LLGLSSEDLVGN 380

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF---- 486
            ++++Y + G++D A +  + K   + + V W A++  C  +G     +  A +LF    
Sbjct: 381 ALIDMYSKCGMLDAAKTNFINKN--DKTGVSWTAMITGCVQNGQ----QEEALQLFCGMR 434

Query: 487 --ELEPDNEHNFELLIKIYGN 505
              L PD    F   IK   N
Sbjct: 435 RAGLSPDRA-TFSSTIKASSN 454


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 206/344 (59%), Gaps = 11/344 (3%)

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC----GDIVK 247
           P++FT+P VLKACAG+G + +G+ VH   ++FGFG +  V N LV MY  C    G I  
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS- 306
           AR VFD +   D +S+++M+ GY+  G   +A ++FR M + G  PD + + S+L+  + 
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 307 --LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L +G  V  +V +  V+ ++ ++N+LI +++K G +D+A  LF  M ++++VSW S+
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV 187

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I     H +  EA+  FE+M R GV PD + F+ LLSAC+H G V  G+R F  M + + 
Sbjct: 188 IGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFS 247

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P++EHY CMV++  RAGL+ EA    V++M  + +PVVW  L+ AC  HG + +GE  
Sbjct: 248 IVPKIEHYGCMVDMLCRAGLVKEALK-FVQEMPIDPNPVVWRTLINACRAHGELKLGEKI 306

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++L   EP +E N+ LL  IY      +   R+   +  +G++
Sbjct: 307 TRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMK 350



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 184/379 (48%), Gaps = 38/379 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF----GLIDEAHQV 148
           T+  +L+ C  +  +  G  +H  +          + + L+ +Y       G I+ A +V
Sbjct: 12  TYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKV 71

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD+M    + +  W+++I GY  +G   DAI L+ +M+ +GV PD+ T   VL AC GLG
Sbjct: 72  FDEMYKSDSVS--WSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLG 129

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            + +G+ V     +     +  + NAL+DM+AKCGD+ KA  +F  +  ++++S+ S++ 
Sbjct: 130 ALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIG 189

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
           G   HG  VEA  +F  M+ +G  PD V    +L+  S        H  ++ +G  +   
Sbjct: 190 GLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACS--------HSGLVDKGKRY--- 238

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
             +S+   +S   K++    + D + +  +V             EAL + ++M  D   P
Sbjct: 239 -FDSMRKDFSIVPKIEHYGCMVDMLCRAGLVK------------EALKFVQEMPID---P 282

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID-EAYS 447
           + + + +L++AC   G +K+GE++   ++    +     +Y  + N+Y  A + D E  +
Sbjct: 283 NPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHE--SNYVLLSNIY--AKMSDWEKKT 338

Query: 448 MIVEKMEFEASPVVWGALL 466
            I E M+ +    + G+ +
Sbjct: 339 RIREAMDMKGMKKIPGSTM 357



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 8/226 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  S+L  C  L A+E G  +   +    ++KN  +S+ L+ ++A  G +D+A
Sbjct: 110 GVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKA 169

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F  M  R   +  W S+I G A  G   +A+A++ +M   GV PD   F  +L AC+
Sbjct: 170 TNLFRSMRERNIVS--WTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACS 227

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA-RTVFDRIGNKDLIS 262
             GL+  G++ + D++R  F     +     +VDM  + G + +A + V +   + + + 
Sbjct: 228 HSGLVDKGKR-YFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVV 286

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNG--FDPDPVAISSILANAS 306
           + +++     HG L     I R +I N    + + V +S+I A  S
Sbjct: 287 WRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMS 332


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/488 (30%), Positives = 264/488 (54%), Gaps = 49/488 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL-----RKNKGISSKLLRLYA 137
           V+ G+   + +  + L + Y  +A E GI    ++    L     ++++   + ++  Y 
Sbjct: 175 VKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYV 234

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
               ++ A +VF+ M      A  WN++ISGY   G +++A+ L  +M   G++ D  T+
Sbjct: 235 RNDDLNGAREVFEAMVENLGAA--WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITY 292

Query: 198 PRVLKACAGLGLIRVGEKVHL----DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             ++ ACA +G  ++G+++H     + +     F   V NAL+ +Y K   + +AR +F 
Sbjct: 293 TTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEA-------------------------------FDI 282
            +  +++I++N++L+GY++ G + EA                                 +
Sbjct: 353 AMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 283 FRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F+ M L+GF+P   A +  L   S+   L  G Q+H  ++  G E  L + N++I +Y+K
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAK 472

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G ++ A  +F  MP  D+VSWNS+I A   H    +A+  F+QM ++GV PD +TF+++
Sbjct: 473 CGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTV 532

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L+AC+H G V+ G   F+ M+E YGI+P  +HYA MV+L+ RAG+   A  ++++ M  +
Sbjct: 533 LTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA-RIVIDSMPSK 591

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
               VW ALL  C +HGN+ +G  AA++LF+L P N+  + LL  IY + GR +DV +V 
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVR 651

Query: 517 RMLVDRGL 524
           +++ D+ +
Sbjct: 652 KLMRDQAV 659



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 189/427 (44%), Gaps = 85/427 (19%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y   G ++   ++F+        +  +N++I+GYA  G+   A+ L+  M  + 
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 190 VEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAK------ 241
             PD FTF  VL A    +G  +   ++H   V+ G G     VLNAL+ +Y K      
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 242 --CGDIVKARTVFDRIGNKDLIS-------------------------------YNSMLT 268
             C  +V AR +FD +  +D ++                               +N+M++
Sbjct: 203 IPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE- 324
           GY+H G   EA  + R M   G   D +  ++I+   AN    ++G Q+H ++L+  +  
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNP 322

Query: 325 ---WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----------- 370
              + L ++N+LI +Y K+ K+D+A  +F  MP +++++WN+I+  +             
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 371 -----------------------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
                                    E L  F+QM  DG  P    F   L+AC+ LG+++
Sbjct: 383 EEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALE 442

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G +L + +V   G    +     M+++Y + G+++ A S+ V     +   V W +++ 
Sbjct: 443 NGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL--VSWNSMIA 499

Query: 468 ACYLHGN 474
           A   HG+
Sbjct: 500 ALGQHGH 506



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 165/389 (42%), Gaps = 112/389 (28%)

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS--------- 262
           +   VH   +  GF   G  LN L++MY K  ++V AR +F+ I N D I+         
Sbjct: 31  LARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYC 90

Query: 263 ------------------------YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
                                   YN+M+TGY H+G    A ++FR M  + F PD    
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 299 SSILANASLLRIG-----AQVHGWVLRRGVEWDLCIA----NSLIVVYSKDGK------- 342
           +S+L+ A +L +G      Q+H  V++ G+    C++    N+L+ VY K          
Sbjct: 151 TSVLS-ALVLFVGNEQQCGQMHCAVVKTGMG---CVSSSVLNALLSVYVKRASELGIPCS 206

Query: 343 -LDQACWLFDHMPQKDVVSWNSIIHAHSKD------------------------------ 371
            +  A  LFD MP++D ++W ++I  + ++                              
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 372 ----HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                EAL    +M   G+  D +T+ +++SACA++GS ++G+++ + ++ K  ++P   
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYIL-KNELNP--N 323

Query: 428 HYAC------MVNLYGRAGLIDEA----YSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           H  C      ++ LY +   +DEA    Y+M V  +      + W A+     L G V  
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI------ITWNAI-----LSGYVNA 372

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNA 506
           G     K F  E   ++   L + I G A
Sbjct: 373 GRMEEAKSFFEEMPVKNLLTLTVMISGLA 401


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 230/389 (59%), Gaps = 9/389 (2%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +    Q+FD MS+ +  +  WN+++SGY +  ++ +A+ L+ +M+ +   PD+ T   
Sbjct: 366 GDVKVGRQIFDCMSSPSLIS--WNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAI 423

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           +L +CA LGL+  G++VH  + + GF  D +V ++L+++Y+KCG +  ++ VF ++   D
Sbjct: 424 ILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELD 483

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA---ISSILANASLLRIGAQVHG 316
           ++ +NSM+ G+  + L  +A   F+ M   GF P   +   I+S  A  S L  G Q+H 
Sbjct: 484 VVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHA 543

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---E 373
            +++ G   ++ + +SL+ +Y K G +  A + FD MP K++V+WN +IH ++ +    E
Sbjct: 544 QIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLE 603

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  ++ M   G  PD +TFV++L+AC+H   V  G  +FS M++K+ + P+++HY C++
Sbjct: 604 AVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCII 663

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +  GR G  +E   +I++ M ++   +VW  +L +C +H NV + + AA++L  L P N 
Sbjct: 664 DCLGRVGRFNEV-EVILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNS 722

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDR 522
             + LL  +Y + GR DD + V  ++ D 
Sbjct: 723 APYVLLANMYSSMGRWDDAQVVRDLMSDN 751



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 199/420 (47%), Gaps = 58/420 (13%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           + V++    +LL++C   K++     +H  I    L  +  + + L+ LY+    I  AH
Sbjct: 1   MEVKSLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAH 60

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE------------------- 187
            VFD++ ++  F++  N+++S + +    + A  L+ QM E                   
Sbjct: 61  HVFDKIPHKNIFSY--NAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYE 118

Query: 188 -------------EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
                        E V+P   TF  V  AC GL  +  G + H   ++ GF  + +V NA
Sbjct: 119 RQALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNA 178

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+ MY KCG    A  VF+ I   + +++ +M+ G      + E  ++FR M+  G   D
Sbjct: 179 LLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVD 238

Query: 295 PVAISSILA---------------NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
            V++S+IL                  S    G Q+H   ++ G E DL + NSL+ +Y+K
Sbjct: 239 SVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAK 298

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSL 396
            G +D A  +F+++ +  VVSWN +I  +       +AL  F++M+  G  PD +T++++
Sbjct: 299 TGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINM 358

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L+AC   G VKVG ++F  M      SP +  +  +++ Y ++    EA  +   KM+F+
Sbjct: 359 LTACVKSGDVKVGRQIFDCMS-----SPSLISWNAILSGYNQSADHGEAVELF-RKMQFQ 412



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 157/284 (55%), Gaps = 15/284 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A +L +C +L  +E G ++H +        +  ++S L+ +Y+  G ++ +  VF ++
Sbjct: 420 TLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKL 479

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S        WNS+I+G++     +DA+A + +M + G  P +F+F  +  +CA L  +  
Sbjct: 480 SELDVVC--WNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQ 537

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++ G+  + FV ++LV+MY KCGD+  AR  FD +  K+++++N M+ GY H
Sbjct: 538 GQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAH 597

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR-----GVE 324
           +G  +EA  +++ MI +G  PD +   ++L   ++++L+  G ++   +L++      ++
Sbjct: 598 NGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLD 657

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
              CI + L     + G+ ++   + D MP K D + W  ++ +
Sbjct: 658 HYTCIIDCL----GRVGRFNEVEVILDTMPYKDDTIVWEVVLSS 697



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 162/358 (45%), Gaps = 61/358 (17%)

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           +E        +L++C     +   + +H    RF    D F+ N L+D+Y+KC  I  A 
Sbjct: 1   MEVKSLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAH 60

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF---------------RGMILNGFD-- 292
            VFD+I +K++ SYN++L+ +     L  A  +F                 M+ NG++  
Sbjct: 61  HVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQ 120

Query: 293 ---------------PDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLI 334
                          P  +  +++ +    L+    G + HG VL+ G + ++ ++N+L+
Sbjct: 121 ALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALL 180

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHL 391
            +Y+K G  + A  +F+ + + + V++ +++   S+ +   E L  F  M R G+  D +
Sbjct: 181 CMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSV 240

Query: 392 TFVSLLSACAH------------LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           +  ++L  CA             L +   G+++ ++ V K+G    +     ++++Y + 
Sbjct: 241 SLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAV-KHGFERDLHLCNSLLDMYAKT 299

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDN 492
           G +D A + + E ++ + S V W  ++     +GN C  E A +    +     EPD+
Sbjct: 300 GDMDSAEN-VFENLD-KHSVVSWNIMISG---YGNRCDSEKALECFQRMQCCGYEPDD 352


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 240/437 (54%), Gaps = 12/437 (2%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           ++LL       ++ +  ++H  +  +LL ++  I  +L+  Y   G  ++A ++FD M +
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           +   +  WNSLISG++    +    A Y    E  V+P++ T   ++ AC+G   +  G+
Sbjct: 103 KDLVS--WNSLISGFSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACSGA--LDAGK 157

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            +H   ++ G   +  V N+L++MY K GD+  A  +F+ I + + +S+NS++   + +G
Sbjct: 158 YIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNG 217

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA---QVHGWVLRRGVEWDLCIAN 331
              E  D F  M   G + D   I ++L     L +G     +HG +   G    + IA 
Sbjct: 218 CAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIAT 277

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGVLP 388
           +L+  Y+K G+L  +  +F  +   D V+W +++    AH    EA+  FE M   G+ P
Sbjct: 278 ALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEP 337

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           DH+TF  LLSAC+H G V  G+  F+VM E YGI PRV+HY+CMV+L GR GL+++AY  
Sbjct: 338 DHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYE- 396

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           +++ M  E +  VWGALL AC +HGN+ +G+  A+ L  +EP +  N+ +L  +Y  +  
Sbjct: 397 VIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRS 456

Query: 509 LDDVERVERMLVDRGLE 525
             D  +V  +L +RGL+
Sbjct: 457 WKDAAKVRALLKERGLK 473


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 225/381 (59%), Gaps = 13/381 (3%)

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACA 205
            +FDQ+ + TAF +  NSLI      G    A+A+Y +M   G   P+ FT    LKACA
Sbjct: 81  NLFDQIPDPTAFCY--NSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACA 137

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYN 264
            +     G ++H  A+R G     +V   L+++YAKC  +  ARTVFD + G+K+L++++
Sbjct: 138 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 197

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRR 321
           +M++GY   G++ EA  +FR M   G +PD V + S++   A A  L +G  VH ++ R+
Sbjct: 198 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 257

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYF 378
           G+  DL ++ +LI +Y+K G +++A  +FD M +KD  +W+++I     H    +AL  F
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M    V P+++TF+ +LSACAH G V+ G R +S+M +  GI P +E+Y CMV+L  R
Sbjct: 318 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCR 376

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           +GL+D+AYS ++  M    + V+W  LL AC     + + E+A ++L ELEP N  N+ L
Sbjct: 377 SGLLDDAYSFVI-GMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVL 435

Query: 499 LIKIYGNAGRLDDVERVERML 519
           L  +Y +  + D V  + R +
Sbjct: 436 LSNLYASNSQWDRVSYLRRKM 456



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 37/348 (10%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T A  L+ C  + A   G +LH       L  +  + + LL LYA    +  A  VFD M
Sbjct: 128 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 187

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +        W++++SGY+ +G   +A+ L+ +M+  GVEPD+ T   V+ ACA  G + +
Sbjct: 188 AGDKNL-VAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDL 246

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+ VH    R G   D  +  AL+DMYAKCG I +AR VFD +  KD  ++++M+ G+  
Sbjct: 247 GKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAI 306

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HGL+ +A  +F  M+     P+ V    +L   A++ L+  G +    +   G++  +  
Sbjct: 307 HGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMEN 366

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389
              ++ +  + G LD A      MP    VS NS+I                        
Sbjct: 367 YGCMVDLLCRSGLLDDAYSFVIGMP----VSPNSVI------------------------ 398

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
              + +LL AC     + + E     ++E    +P  E+Y  + NLY 
Sbjct: 399 ---WRTLLVACKSSNRIDIAESATKRLLELEPHNP--ENYVLLSNLYA 441



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  S++  C +  A++ G  +H  I    +  +  +S+ L+ +YA  GLI+ A
Sbjct: 223 GVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERA 282

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             VFD M  +   A  W+++I G+A  G  EDA+ L+ +M E  V P+  TF  VL ACA
Sbjct: 283 RGVFDAMVEKDTKA--WSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACA 340

Query: 206 GLGLIRVGEK 215
             GL+  G +
Sbjct: 341 HSGLVEDGRR 350


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 253/454 (55%), Gaps = 15/454 (3%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA-- 137
           +SS +  +  + + +  L++ C   K++E   ++H  I    L  +   SS +L   A  
Sbjct: 21  QSSSELNLKQKEQEYLCLVKKC---KSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALS 77

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
            +  +D A  +F Q+   T F F  N++I GY     +E+AI LY  M +  VEPD FT+
Sbjct: 78  DWNSMDYACSIFQQLDEPTTFDF--NTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTY 135

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           P VLKACA L +I+ G ++H    + G   D +V N+L++MY KC DI  +  +F R+  
Sbjct: 136 PVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQ 195

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSILANASLL---RIGAQ 313
           K + S+++++  +    +  E   +F  M   G +  +   + ++L+  + L    +G  
Sbjct: 196 KSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRC 255

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSK 370
            HG +L+   E ++ +  SL+ +Y K G L +   LF +M +K+ +S++ II     H  
Sbjct: 256 AHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGY 315

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
             +AL  F +M  +G+ PD +T+VS+LSAC+H G V  G  LF  M  +Y I P ++HY 
Sbjct: 316 GRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYG 375

Query: 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
           CMV+L GRAGL++EA+  +V+ M  +A+ V+W +LL AC +H N+ +GE AA+ LF L  
Sbjct: 376 CMVDLKGRAGLLEEAFQ-LVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSS 434

Query: 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            N  ++ +L  +Y  A + ++  ++   +++RGL
Sbjct: 435 HNPSDYLVLSNMYARAQQWENAAKIRTKMINRGL 468


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 242/441 (54%), Gaps = 50/441 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  S+L+ C +L A + G ++H  +    L  +  + + ++R+Y  FG I+ A +VFD+M
Sbjct: 111 SIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRM 170

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            NR   +  WNS+I+GY + GE E A  L+ +M E           R L +C        
Sbjct: 171 PNRDVVS--WNSMIAGYLKAGEIELASELFDEMPE-----------RDLVSC-------- 209

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
                               NA++D Y KCG    A  VF+ + +KD++++ SM++ Y+ 
Sbjct: 210 --------------------NAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQ 249

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC- 328
           +   ++A D+FR M+  G  PD  AI S+L   A+   +  G  +H +V    +E     
Sbjct: 250 NRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGF 309

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
           I ++LI +YSK G ++ A  +F  +  ++++  WNS+I     H    EAL  F +MER 
Sbjct: 310 IGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERM 369

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + P+ +TF+ LLS C+H G V+ G+  F  M EKY I PR++HY CM++L+GRAG +++
Sbjct: 370 DIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLED 429

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A   +++ M FEA  + W A+L A   HG++ +G++AA +  EL PD+  ++ LL  IY 
Sbjct: 430 ALG-VIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYA 488

Query: 505 NAGRLDDVERVERMLVDRGLE 525
            AGR DDV ++  M+  RG++
Sbjct: 489 KAGRWDDVAKIRLMMRQRGVK 509



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 218/473 (46%), Gaps = 95/473 (20%)

Query: 88  TVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISS--KLLRLYATFGLIDE 144
            + T    S+L+ C  L  +    ++H ++I TNLL     +S       L    G +D 
Sbjct: 3   AISTNPVVSVLDKCKSLCELR---QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDY 59

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-----EEEGVEPDQFTFPR 199
           A  VF ++ +  +F F   +LI G+++     +++ LY +M        GVE   F+ P 
Sbjct: 60  ASSVFSRIQHPNSFIF--FALIKGFSDTSNPVESLILYARMLSCLNYSSGVE---FSIPS 114

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           VLKAC  L     G +VH   ++    FD FV N++V MY   G+I  AR VFDR+ N+D
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319
           ++S+NSM+ GY+  G +  A ++F  M                                 
Sbjct: 175 VVSWNSMIAGYLKAGEIELASELFDEM--------------------------------- 201

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALI 376
               E DL   N++I  Y K G+ + A  +F+ M  KDVV+W S+I A+ ++    +AL 
Sbjct: 202 ---PERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALD 258

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVEKYGISPRVEHYACMVNL 435
            F +M   G+ PD    VS+LSA A LG V+ G+ L + V + K  +S      A ++++
Sbjct: 259 LFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSA-LIDM 317

Query: 436 YGRAGLIDEAY----------------SMI------------------VEKMEFEASPVV 461
           Y + G I+ AY                SMI                  +E+M+ E + + 
Sbjct: 318 YSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEIT 377

Query: 462 WGALLYACYLHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           +  LL  C   G V  G+    +  + +++ P  +H +  +I ++G AGRL+D
Sbjct: 378 FLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQH-YGCMIDLFGRAGRLED 429


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/408 (34%), Positives = 223/408 (54%), Gaps = 48/408 (11%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           KN    + ++  Y   G +DEA+++F Q+S R +    WNS+I+GYA  G  ++A+ L+ 
Sbjct: 324 KNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVC--WNSMITGYAHCGRTDEALRLFQ 381

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M                              V  D V +         N ++  YA+ G
Sbjct: 382 EM------------------------------VCKDMVSW---------NTMIAAYAQAG 402

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            + KA  +F+ +  ++++S+NS++TGY+ +GL  EA + F  M   G  PD   I   L 
Sbjct: 403 QMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLR 462

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             AN + L +G Q+H   ++ G   DL + N+++ +Y+K G++ +A  +F  +  KDVVS
Sbjct: 463 ASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVS 522

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WNS+I  ++ +    EA+  FE M   G++PD +TF  LLSAC H G V  G  LF  M 
Sbjct: 523 WNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMT 582

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           E Y I P+ EHYAC++NL GR G ++EA   IV+ M+  +S  +WGALL+AC +H N+ +
Sbjct: 583 ETYSIKPQSEHYACVINLLGRVGRLEEAVE-IVQGMKTVSSAKIWGALLWACRIHHNLEL 641

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + +A++L  LEP N  N+ LL  ++  AGR D VERV  ++ +   E
Sbjct: 642 AKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAE 689



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 173/369 (46%), Gaps = 70/369 (18%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  +A +G + EA  +F++M  +   +  WN++I  Y    + +DA  L+ +M E+   
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNLVS--WNAMIGAYVRENQIDDAYKLFMEMPEK--- 293

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
                                               D     A+++ Y + G +++AR +
Sbjct: 294 ------------------------------------DSVSWTAMINGYVRVGKLLQAREI 317

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----- 306
            + +  K++ +  +M+ GY+  G + EA +IF  + +     D V  +S++   +     
Sbjct: 318 LNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVR----DSVCWNSMITGYAHCGRT 373

Query: 307 --LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              LR+  ++   V +  V W     N++I  Y++ G++D+A  +F+ M +++VVSWNS+
Sbjct: 374 DEALRLFQEM---VCKDMVSW-----NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++    EAL  F  M++ G  PD  T V  L A A+L ++ VG +L  + + K G
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTI-KTG 484

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
               +     ++ +Y ++G + EA ++  E    +   V W +L+    L+G  C  E  
Sbjct: 485 FGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDV--VSWNSLIAGYALNG--CGKE-- 538

Query: 482 AQKLFELEP 490
           A +LFE+ P
Sbjct: 539 AVELFEVMP 547



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 169/395 (42%), Gaps = 91/395 (23%)

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           + ++ F  N  IS     G  E+A+A++ QM E  +                        
Sbjct: 11  KGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNI------------------------ 46

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
                             N+++  YAK G I  AR +FD +  ++L+S+NSM+ GY+H+ 
Sbjct: 47  ---------------VTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNE 91

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV--EWDLCIANS 332
           L+ +A  +F  M    F  D    S  L      RIG       L   +  + D    N+
Sbjct: 92  LVEDAARLFDRM----FKRD--IYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNA 145

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM-ERDGV-- 386
           LI  Y+K     +A  LFD M  K+VVSWNSI+  ++K+ +    L +FE M ER+ V  
Sbjct: 146 LIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSW 205

Query: 387 ------------------------LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                                    P+ +++V++LS  AH G +     LF+ M  K  +
Sbjct: 206 NLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLV 265

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE-TA 481
           S     +  M+  Y R   ID+AY + +E  E ++  V W A+     ++G V +G+   
Sbjct: 266 S-----WNAMIGAYVRENQIDDAYKLFMEMPEKDS--VSWTAM-----INGYVRVGKLLQ 313

Query: 482 AQKLFELEP-DNEHNFELLIKIYGNAGRLDDVERV 515
           A+++  L P  N      +I  Y  +GR+D+   +
Sbjct: 314 AREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 191/407 (46%), Gaps = 52/407 (12%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           ++   N++  N  IS+     YA  G I  A ++FD M  R   +  WNS+I+GY     
Sbjct: 40  QMTERNIVTYNSMISA-----YAKNGRIANARELFDLMPQRNLVS--WNSMIAGYLHNEL 92

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-----DG 229
            EDA  L+ +M     + D +++  ++         R+GE   L+  R  F       D 
Sbjct: 93  VEDAARLFDRM----FKRDIYSWTLMITC-----YTRIGE---LEKARELFNLLPDKQDT 140

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
              NAL+  YAK     +A+ +FD +  K+++S+NS+L+GY  +G +      F  M   
Sbjct: 141 VCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM--- 197

Query: 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA-NSLIVVYSKDGKLDQACW 348
               +   +S  L     + +G     W+  + +     ++  +++  ++  G++ +A  
Sbjct: 198 ---GERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARN 254

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEA----LIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
           LF+ MP K++VSWN++I A+ ++++      ++ E  E+D V     ++ ++++    +G
Sbjct: 255 LFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSV-----SWTAMINGYVRVG 309

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            +     + ++M  K      +     M+N Y ++G +DEA + I  ++    S V W +
Sbjct: 310 KLLQAREILNLMPYK-----NIAAQTAMINGYLQSGRMDEA-NEIFSQISVRDS-VCWNS 362

Query: 465 LLYACYLHGNVCMGETAAQKLF-ELEPDNEHNFELLIKIYGNAGRLD 510
           ++   Y H   C     A +LF E+   +  ++  +I  Y  AG++D
Sbjct: 363 MITG-YAH---CGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMD 405



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G      T    L     L A+  G++LH L        +  + + +L +YA  G + 
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVP 506

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA  VF ++ N+   +  WNSLI+GYA  G  ++A+ L+  M   G+ PD+ TF  +L A
Sbjct: 507 EAENVFAEIKNKDVVS--WNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 204 CAGLGLIRVG 213
           C   G +  G
Sbjct: 565 CNHGGFVDQG 574


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 233/447 (52%), Gaps = 10/447 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+       + L+  C ++  +  G  +H       +  +  + + L+ +Y  F L   A
Sbjct: 395 GLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYA 454

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F++M  +      WN+LI+G+ + G+   A+ ++ +++  G+ PD  T   +  ACA
Sbjct: 455 MTLFNRMQIKDIVV--WNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACA 512

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDLISYN 264
            +  + +G  +H    + GF  D  V  AL+DMYAKCG +     +F    + KD +S+N
Sbjct: 513 IMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWN 572

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRR 321
            M+ GY+H+G   EA   FR M L    P+ V   +IL   S   +LR     H  ++R 
Sbjct: 573 VMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRM 632

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
           G      I NSLI +Y+K G+L  +   F  M  KD +SWN+++ A   H +   A+  F
Sbjct: 633 GFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALF 692

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M+   V  D ++++S+LSAC H G ++ G  +F+ M EK+ + P +EHYACMV+L G 
Sbjct: 693 SVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGC 752

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AGL DE  S++  KM  E    VWGALL AC +H NV +GE A   L +LEP N  +  +
Sbjct: 753 AGLFDEVLSLL-NKMTTEPDARVWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVV 811

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGLE 525
           L  IY   GR +D  R    + + GL+
Sbjct: 812 LSDIYAQCGRWNDARRTRSHINNHGLK 838



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 183/354 (51%), Gaps = 17/354 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           +S+ L+ +Y   G +  A +VFD+M  R   +  W ++++GY + G Y + + L  +M  
Sbjct: 235 VSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVS--WATMMAGYVKNGCYFEGLQLLHKMRR 292

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
             V+ ++      L   A +  +  G++++  A++ G   D  V   +V MYAKCG++ K
Sbjct: 293 GNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKK 352

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA-- 305
           AR +F  +  +DL+++++ L+  +  G   E   IF+ M   G  PD  AI SIL +   
Sbjct: 353 ARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDK-AILSILVSGCT 411

Query: 306 --SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
             S + +G  +H + ++  +E D+ +  +L+ +Y +      A  LF+ M  KD+V WN+
Sbjct: 412 EISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNT 471

Query: 364 IIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I+  +K    H AL  F +++  G+LPD  T V L SACA +  + +G  L    +EK 
Sbjct: 472 LINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHG-GIEKS 530

Query: 421 GISPRVEHYACMVNLYGRAGLID--EAYSMIVEKMEFEASPVVWGALLYACYLH 472
           G    +     ++++Y + G +   E   ++ + ++ E S   W  ++ A YLH
Sbjct: 531 GFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVS---WNVMI-AGYLH 580



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 170/334 (50%), Gaps = 19/334 (5%)

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           + H  F Q+ N +   +  NS I  Y++   +  AI LY  + + G++PD+FTF  VLKA
Sbjct: 51  QIHTHFLQIKNPSLILY--NSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKA 108

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C        G  ++ D V  G   D ++  +L+DM+ K G +  AR VFD++  KD + +
Sbjct: 109 CTSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCW 168

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL-RIGA--QVHGWVLR 320
           N+M++G        EA ++F  M + GF+ D V+I ++    S L  +G    +HG+V+R
Sbjct: 169 NAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVR 228

Query: 321 RGVEWDLC--IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEAL 375
           R +    C  ++NSLI +Y K G +  A  +FD M  +D VSW +++  + K+    E L
Sbjct: 229 RSI----CGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGL 284

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
               +M R  V  + +  V+ L   A +  ++ G+ +++  ++  G+   +     +V +
Sbjct: 285 QLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQ-MGLMSDIVVATPIVCM 343

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYA 468
           Y + G + +A  +    +  E   +V W A L A
Sbjct: 344 YAKCGELKKARELF---LSLEGRDLVAWSAFLSA 374



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 161/362 (44%), Gaps = 32/362 (8%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI   + T   L   C  +  ++ G  LH  I  +    +  +   L+ +YA  G +  
Sbjct: 495 SGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCS 554

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
             ++F  ++        WN +I+GY   G   +AI+ + +M+ E V P+  TF  +L A 
Sbjct: 555 VERLF-LLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAV 613

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + L ++R     H   +R GF     + N+L+DMYAKCG +  +   F  + NKD IS+N
Sbjct: 614 SYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWN 673

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           +ML+ Y  HG    A  +F  M  +    D V+  S+L+        A  H  +++ G  
Sbjct: 674 AMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLS--------ACRHSGLIQEG-- 723

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
           WD  I  S+   +  +  ++    + D +    +              E L    +M  +
Sbjct: 724 WD--IFASMCEKHHVEPSMEHYACMVDLLGCAGLFD------------EVLSLLNKMTTE 769

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLID 443
              PD   + +LL+AC    +V +GE     +++   + PR   H+  + ++Y + G  +
Sbjct: 770 ---PDARVWGALLAACKIHSNVTLGEVAVHHLLK---LEPRNPVHHVVLSDIYAQCGRWN 823

Query: 444 EA 445
           +A
Sbjct: 824 DA 825


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 243/472 (51%), Gaps = 19/472 (4%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQN-GITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           Q  +P+  L         L  S+QN G+        S L  C ++ +++ G  +H     
Sbjct: 66  QSGYPQEALS--------LFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVK 117

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
             +  +  + + L+ +YA  G    A  +F++M  +      WN++I+GYA++GE   A+
Sbjct: 118 ANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVT--WNAMINGYAQIGEPFPAL 175

Query: 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
            ++ +++   + P+  T   +L A A L  +  G  +H   ++ GF  +  V  AL+DMY
Sbjct: 176 EMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMY 235

Query: 240 AKCGDIVKARTVFDRIG-NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           AKCG +  A  +F R G  KD +S+N M+ GY+H G  ++AF  F  M L    P+ V I
Sbjct: 236 AKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTI 295

Query: 299 SSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
            ++L   A+ S LR G  +H +V+R G +    + N LI +Y+K G LD +  +F  M  
Sbjct: 296 VTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKN 355

Query: 356 KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           KD VSWN ++     H +   A+  F +M+   +  D  +F+++LSAC H G +  G ++
Sbjct: 356 KDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKI 415

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
           F  M +++ + P +EHYACM +L GRAGL +E   +I + M  E    VWGALL A  +H
Sbjct: 416 FDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLI-KSMPMEPDAGVWGALLGASTMH 474

Query: 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            NV + E A   L +LE  N  ++  L   Y  +GR  DV      +   GL
Sbjct: 475 SNVQLAEFALHHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGL 526



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 210/397 (52%), Gaps = 16/397 (4%)

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           ++A+  G ++H       +  +  +++ ++ +YA  G +D A Q+F ++  R   A  W+
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVA--WS 58

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I+ + + G  ++A++L+  M+ EG++ ++      L ACA +  +++G+ +H  AV+ 
Sbjct: 59  AIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKA 118

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
               D  V  ALV MYAKCG    A T+F+R+  KD++++N+M+ GY   G    A ++F
Sbjct: 119 NVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMF 178

Query: 284 RGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             + L+  +P+   +  +L   +LL     G+ +HG +++ G E +  +  +LI +Y+K 
Sbjct: 179 HKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKC 238

Query: 341 GKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEALIYFE---QMERDGVLPDHLTFVSL 396
           G L  A +LF     +KD VSWN +I  +     A+  F    QM+ + + P+ +T V++
Sbjct: 239 GSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTV 298

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L A AHL +++ G  L + ++ + G   +     C++++Y + G +D +  +  E    +
Sbjct: 299 LPAVAHLSALRAGMTLHAYVI-RMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKD 357

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
              V W  +L    +HG      + A +LF    D+E
Sbjct: 358 T--VSWNVMLAGYAVHGR----GSCAIELFSRMQDSE 388


>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
 gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
          Length = 495

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 219/415 (52%), Gaps = 13/415 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     TF S+L+ C   +AVE G  +HRL     L     + + L+ +Y     + 
Sbjct: 69  EEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLI 128

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA QVFD +  +      W+++IS YA+LG   +AI L+  M  +GV P++     +L A
Sbjct: 129 EARQVFDGIVEKDVV--TWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGA 186

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+  G +  G+  H   V  GFG D    N L+ MY KCGD+  A+ VF  +  +DLIS+
Sbjct: 187 CSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISW 246

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR--- 320
           ++ML     HG   +AF  FR M L G  PD V   S+L   SLL  GA V G V+    
Sbjct: 247 SAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLL--GALVEGNVIHTRI 304

Query: 321 --RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
              G +  + I NSLI +Y K G L  A  +FD M  ++V++W ++I A   H +  EAL
Sbjct: 305 RAEGFQSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEAL 364

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             FE+ME+ GV PD + F+S++ +C+H G V+ G   F  MVE    +P VEH+  M++L
Sbjct: 365 ELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDL 424

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490
            GR+G ++EA  ++ E M  E   V W  LL AC  H +       A  +  L P
Sbjct: 425 LGRSGKLNEAEELM-EFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGP 478



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 204/354 (57%), Gaps = 17/354 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + LL +Y   G ++EA + F+ M++R   +  W+++++ YA+ G+++ A+ L+ +MEE
Sbjct: 12  VGNSLLNMYGKCGGVEEAREFFESMTHRNVIS--WSTMVAAYAQRGDHDQALVLFQKMEE 69

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           EGVEP++ TF  VL ACA    +  GE +H  A R        V  ALV MY KC  +++
Sbjct: 70  EGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIE 129

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           AR VFD I  KD++++++M++ Y   G + EA  +F  M L+G  P+ + + SIL   ++
Sbjct: 130 ARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSS 189

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           A  L  G   H  V+  G   D+   N+LI +Y K G L  A  +F  M ++D++SW+++
Sbjct: 190 AGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAM 249

Query: 365 I-----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS-VMVE 418
           +     H H KD  A ++F +M+ +GV PD++TFVSLL AC+ LG++  G  + + +  E
Sbjct: 250 LAVIAEHGHCKD--AFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAE 307

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH 472
            +     +E+   ++++YG+ G +  A   I ++M    + + W  ++ AC  H
Sbjct: 308 GFQSVMYIENS--LIDMYGKCGSLQAARG-IFDRMSHR-NVITWTTMITACVQH 357



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 139/253 (54%), Gaps = 13/253 (5%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           FV N+L++MY KCG + +AR  F+ + ++++IS+++M+  Y   G   +A  +F+ M   
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 290 GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G +P+ V   S+L   ANA  +  G  +H    R+ ++  L +  +L+ +Y K  +L +A
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIEA 130

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             +FD + +KDVV+W+++I A+++     EA+  F  M  DGV P+ +  +S+L AC+  
Sbjct: 131 RQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSA 190

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVV 461
           G++  G+    ++V   G    V     ++ +YG+ G +  A ++   +E+ +     + 
Sbjct: 191 GALAEGKMTHELVV-ICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDL----IS 245

Query: 462 WGALLYACYLHGN 474
           W A+L     HG+
Sbjct: 246 WSAMLAVIAEHGH 258


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 241/434 (55%), Gaps = 16/434 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF S++ +C   + V H  ++H             +S+  + +Y++ G +   H VFD++
Sbjct: 289 TFVSVMSSCSSAR-VSH--QVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRL 345

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  WN +I  YA+   Y  AI  + QM+  G+EPD+FT   +L +   L ++++
Sbjct: 346 EEKDLIS--WNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVKM 403

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            + +     + G      V NALV  ++K G I +A  VF+ + + +LIS+N++++G++ 
Sbjct: 404 FQAL---VSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLF 460

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G  ++  + F  ++++   P+   +S   SI A+ S LR G Q+HG++LR GV     +
Sbjct: 461 NGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSL 520

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME-RDG 385
            N+LI +Y+K G LD +  +F+ M  +D+VSWN++I A   H K  EA+ +F+ M+   G
Sbjct: 521 GNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGG 580

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD  TF ++LSAC+H G V  G R+F+ MV  YG  P  +H +C+V+L GRAG ++EA
Sbjct: 581 VKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEA 640

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I  K   +    +W  L  AC  HGN+ +G   A  L E+E ++   + LL  IY  
Sbjct: 641 ERLINSK-HLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAA 699

Query: 506 AGRLDDVERVERML 519
           AG+ ++      ++
Sbjct: 700 AGQWEEAANTRDLM 713



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 225/452 (49%), Gaps = 21/452 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G+     TFAS+L  C  L+ ++ G ++H L+          + + LL +Y   G + 
Sbjct: 178 QLGVRHDKYTFASVLSLC-SLELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVA 236

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A++VF++  +       +N +I G A +G  E+A+ ++ +M+E  + P + TF  V+ +
Sbjct: 237 DAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSS 296

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+     RV  +VH  A++ GF     V NA + MY+ CG++     VFDR+  KDLIS+
Sbjct: 297 CSS---ARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISW 353

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           N ++  Y        A   F  M   G +PD   I S+LA++  L I       V + G+
Sbjct: 354 NIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGL 413

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
              + ++N+L+  +SK G+++QA  +F++M   +++SWN+II     +    + L  F +
Sbjct: 414 NSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYE 473

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           +    + P+  T   +LS CA + +++ G+++   ++ + G+         ++ +Y + G
Sbjct: 474 LLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYIL-RSGVFSVTSLGNALITMYAKCG 532

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA------QKLFELEPDNEH 494
            +D  +S+ +  +      V W A++ A   HG    G+ A       Q    ++PD + 
Sbjct: 533 DLD--WSLRIFNVMNGRDIVSWNAMISAYAQHGK---GKEAVHFFKAMQDSGGVKPD-QA 586

Query: 495 NFELLIKIYGNAGRLDDVERV-ERMLVDRGLE 525
            F  ++    +AG +DD  R+   M+ D G E
Sbjct: 587 TFTAVLSACSHAGLVDDGTRIFNSMVNDYGFE 618



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 217/469 (46%), Gaps = 46/469 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S L  C  L+    G +LH       L+    + + LL  YA    +    +VF+++
Sbjct: 55  TLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEI 114

Query: 153 SNRTAFAFP-----------------------------WNSLISGYAELGEYEDAIALYF 183
            N   +++                              WN++I+G AE    E A+ L+ 
Sbjct: 115 ENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFR 174

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M + GV  D++TF  VL  C+ L L+  G +VH   ++ GF     V+NAL+ MY   G
Sbjct: 175 EMHQLGVRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSG 233

Query: 244 DIVKARTVFDRIGNK--DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
            +  A  VF+   +   D I++N M+ G    G   EA  +F+ M      P  +   S+
Sbjct: 234 KVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSV 293

Query: 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
           +++ S  R+  QVH   ++ G E    ++N+ + +YS  G L     +FD + +KD++SW
Sbjct: 294 MSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISW 353

Query: 362 NSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N II  +++ +    A++ F QM+R G+ PD  T  SLL++   L  VK    +F  +V 
Sbjct: 354 NIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVK----MFQALVS 409

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVC 476
           K G++ ++E    +V+ + + G I++AY  +   M   +SP  + W  ++     +G   
Sbjct: 410 KNGLNSKIEVSNALVSAFSKHGQIEQAYQ-VFNNM---SSPNLISWNTIISGFLFNGFTL 465

Query: 477 MG-ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            G E   + L      N +   +++ I  +   L   +++   ++  G+
Sbjct: 466 QGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGV 514



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 46/336 (13%)

Query: 178 AIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           ++ L+ Q+     ++PD FT    L ACA L     G ++H  +++ G      V N L+
Sbjct: 36  SVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLL 95

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLIS-------------------------------YNS 265
             YAK  D+V  + VF+ I N D+ S                               +N+
Sbjct: 96  SFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNA 155

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS--LLRIGAQVHGWVLRRGV 323
           ++TG   +     A ++FR M   G   D    +S+L+  S  LL  G +VH  V++ G 
Sbjct: 156 IITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCSLELLDFGREVHTLVIKTGF 215

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK--DVVSWNSIIHAHS---KDHEALIYF 378
                + N+L+ +Y   GK+  A  +F+       D +++N +I   +   +D EALI F
Sbjct: 216 LVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMF 275

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M+   + P  LTFVS++S+C+   S +V  ++ +  + K G           + +Y  
Sbjct: 276 KEMQEACLRPTELTFVSVMSSCS---SARVSHQVHAQAI-KMGFEACTPVSNAAMTMYSS 331

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            G +  A  M+ +++E E   + W  ++   Y  GN
Sbjct: 332 CGNL-HAVHMVFDRLE-EKDLISWNIIIMN-YAQGN 364


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/488 (30%), Positives = 264/488 (54%), Gaps = 49/488 (10%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL-----RKNKGISSKLLRLYA 137
           V+ G+   + +  + L + Y  +A E GI    ++    L     ++++   + ++  Y 
Sbjct: 175 VKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYV 234

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
               ++ A +VF+ M      A  WN++ISGY   G +++A+ L  +M   G++ D  T+
Sbjct: 235 RNDDLNGAREVFEAMVENLGAA--WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITY 292

Query: 198 PRVLKACAGLGLIRVGEKVHL----DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
             ++ ACA +G  ++G++VH     + +     F   V NAL+ +Y K   + +AR +F 
Sbjct: 293 TTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEA-------------------------------FDI 282
            +  +++I++N++L+GY++ G + EA                                 +
Sbjct: 353 AMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 283 FRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F+ M L+GF+P   A +  L   S+   L  G Q+H  ++  G E  L + N++I +Y+K
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAK 472

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396
            G ++ A  +F  MP  D+VSWNS+I A   H    +A+  F+QM ++GV PD +TF+++
Sbjct: 473 CGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTV 532

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           L+AC+H G V+ G   F+ M+E YGI+P  +HYA MV+L+ RAG+   A  ++++ M  +
Sbjct: 533 LTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA-RIVIDSMPSK 591

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516
               VW ALL  C +HGN+ +G  AA++LF+L P N+  + LL  IY + GR ++V +V 
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVR 651

Query: 517 RMLVDRGL 524
           +++ D+ +
Sbjct: 652 KLMRDQAV 659



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 189/427 (44%), Gaps = 85/427 (19%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+  Y   G ++   ++F+        +  +N++I+GYA  G+   A+ L+  M  + 
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 190 VEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAK------ 241
             PD FTF  VL A    +G  +   ++H   V+ G G     VLNAL+ +Y K      
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 242 --CGDIVKARTVFDRIGNKDLIS-------------------------------YNSMLT 268
             C  +V AR +FD +  +D ++                               +N+M++
Sbjct: 203 ISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE- 324
           GY+H G   EA  + R M   G   D +  ++I+   AN    ++G QVH ++L+  +  
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNP 322

Query: 325 ---WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK----------- 370
              + L ++N+LI +Y K+ K+D+A  +F  MP +++++WN+I+  +             
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 371 -----------------------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
                                    E L  F+QM  DG  P    F   L+AC+ LG+++
Sbjct: 383 EEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALE 442

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G +L + +V   G    +     M+++Y + G+++ A S+ V     +   V W +++ 
Sbjct: 443 NGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL--VSWNSMIA 499

Query: 468 ACYLHGN 474
           A   HG+
Sbjct: 500 ALGQHGH 506



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 167/389 (42%), Gaps = 112/389 (28%)

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS--------- 262
           +   VH   +  GF   G  LN L++MY K  ++V AR +F+ I N D I+         
Sbjct: 31  LARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYC 90

Query: 263 ------------------------YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
                                   YN+M+TGY H+G    A ++FR M  + F PD    
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 299 SSILANASLLRIG-----AQVHGWVLRRGVEWDLCIA----NSLIVVYSKDG-KLDQACW 348
           +S+L+ A +L +G      Q+H  V++ G+    C++    N+L+ VY K   +L  +C 
Sbjct: 151 TSVLS-ALVLFVGNEQQCGQMHCAVVKTGMG---CVSSSVLNALLSVYVKRASELGISCS 206

Query: 349 -------LFDHMPQKDVVSWNSIIHAHSKD------------------------------ 371
                  LFD MP++D ++W ++I  + ++                              
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 372 ----HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                EAL    +M   G+  D +T+ +++SACA++GS ++G+++ + ++ K  ++P   
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL-KNELNP--N 323

Query: 428 HYAC------MVNLYGRAGLIDEA----YSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           H  C      ++ LY +   +DEA    Y+M V  +      + W A+     L G V  
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI------ITWNAI-----LSGYVNA 372

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNA 506
           G     K F  E   ++   L + I G A
Sbjct: 373 GRMEEAKSFFEEMPVKNLLTLTVMISGLA 401


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 227/402 (56%), Gaps = 11/402 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++S L  +Y+  GL+ EA +VFDQM  + A A  W ++I GYA+ G  E A+  +  M+ 
Sbjct: 308 VASNLADMYSKCGLLSEACRVFDQMPQKDAVA--WTAMIDGYAKNGSLEAAVLSFRDMKR 365

Query: 188 EG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           EG V  DQ  F  VL A  GL    + + +H    + GF  +  V NAL+DMYAK  D+ 
Sbjct: 366 EGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVE 425

Query: 247 KARTVFD-RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
            A  V     G  +++S  SM+ GYI    + EA  I+  +   G +P+    SS++   
Sbjct: 426 SASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGC 485

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A  +LL  GAQ+H  V++  +  D  + ++L+ +Y K G +  +  LF+ +  +  ++WN
Sbjct: 486 AMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWN 545

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I+    H    EA+  F++M   G+ P+H+ FVSLL+AC+H G V  G + F  M E 
Sbjct: 546 AVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEA 605

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +GI P+ EHY+C+++ YGRAG +DEAY  I E M  + +   W +LL AC + G+  +GE
Sbjct: 606 HGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE-MPIKPNAYGWCSLLGACRMRGSKELGE 664

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
            AAQ L +LEP N      L  IY + G+ +DV+ V +++ D
Sbjct: 665 VAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRD 706



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 217/469 (46%), Gaps = 54/469 (11%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           T   ASLL++C +   +  G  LH RL+ +     +  +++ L+ +Y+    +  A ++F
Sbjct: 170 TVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLF 229

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
             M  R A +  W +L+SG ++   + DA+A +  M   GV P +F      +A A LG 
Sbjct: 230 AAMPRRNAVS--WTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 287

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
                     A   GF  + FV + L DMY+KCG + +A  VFD++  KD +++ +M+ G
Sbjct: 288 PLRARSCTASA-SVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDG 346

Query: 270 YIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIG---AQVHGWVLRRGVEW 325
           Y  +G L  A   FR M   G    D     S+L+ +  L+ G     +H  V + G E 
Sbjct: 347 YAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFEL 406

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQM 381
           ++ + N+LI +Y+K   ++ A  +    P   +VVS  S+I  + +     EAL+ + ++
Sbjct: 407 EVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVEL 466

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            R GV P+  TF S++  CA    ++ G +L + +++   I       + +V++YG+ GL
Sbjct: 467 RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGL 525

Query: 442 IDEAYSMIVEKMEFEASPVVWGA-----------------------------------LL 466
           I  +  +  E +E+  + + W A                                   LL
Sbjct: 526 ISLSMQLFNE-IEYR-TDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 583

Query: 467 YACYLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512
            AC   G V  G     + ++   +EP  EH +  +I  YG AGRLD+ 
Sbjct: 584 TACSHAGLVDEGLKYFYSMKEAHGIEPKEEH-YSCIIDTYGRAGRLDEA 631



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 210/474 (44%), Gaps = 73/474 (15%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           T   ASLL++C +   +  G  LH RL+ +     +  +++ L+ +Y+    +  A ++F
Sbjct: 20  TVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLF 79

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF---------PR- 199
             M  R A +  W +L+SG ++   + DA+A +  M   GV P +  +         P+ 
Sbjct: 80  AAMPRRNAVS--WTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKH 137

Query: 200 --------------------------------------VLKACAGLGLIRVGEKVHLDAV 221
                                                 +L++C   G +R G  +H   V
Sbjct: 138 TLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLV 197

Query: 222 RFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
             G      F+ N L+ MY+ C D+  A  +F  +  ++ +S+ ++++G   + +  +A 
Sbjct: 198 LSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADAL 257

Query: 281 DIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD--LCIANSLIVVYS 338
             F  M   G  P   A+SS    A+ L    +         V +D  L +A++L  +YS
Sbjct: 258 AAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLADMYS 317

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL-PDHLTFV 394
           K G L +AC +FD MPQKD V+W ++I  ++K+     A++ F  M+R+G++  D   F 
Sbjct: 318 KCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFC 377

Query: 395 SLLSACAHLGSVKVG--ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452
           S+LSA    G +K G   +     V K G    V     ++++Y ++  ++ A  ++  K
Sbjct: 378 SVLSAS---GGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL--K 432

Query: 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL-----EPDNEHNFELLIK 501
           ++     VV G  +   Y+  + C+ E A     EL     EP NE  F  +IK
Sbjct: 433 IDPGGWNVVSGTSMIDGYIETD-CV-EEALVIYVELRRQGVEP-NEFTFSSMIK 483



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + G+     TF+S+++ C     +E G +LH ++I T+L+R +  + S L+ +Y   GLI
Sbjct: 468 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR-DSFVGSTLVDMYGKCGLI 526

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             + Q+F+++  RT  A  WN++I+ +A+ G   +AI  + +M   G+ P+   F  +L 
Sbjct: 527 SLSMQLFNEIEYRTDIA--WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 584

Query: 203 ACAGLGLIRVGEK 215
           AC+  GL+  G K
Sbjct: 585 ACSHAGLVDEGLK 597



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 293 PDPVAISSI--------LANASLLRIGAQVHG-WVLRRGVEWDLCIANSLIVVYSKDGKL 343
           P P A +++           A  LR G  +H   VL         +AN LI +YS    L
Sbjct: 13  PAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADL 72

Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTF 393
             A  LF  MP+++ VSW +++   S++    +AL  F  M R GV P  L +
Sbjct: 73  ASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIY 125


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/477 (32%), Positives = 260/477 (54%), Gaps = 28/477 (5%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           QKA PKT   A+   +Q L  +++        T +S+L+ C QL+ +  G  LH ++   
Sbjct: 132 QKAQPKT---AVHLFLQMLGQAIEP----NAFTLSSILKACSQLENLHLGKTLHAVVFIR 184

Query: 121 LLRKNKGI-SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
               N  + +  L+ +Y    ++D+A +VFD++         W ++IS  A    + +A+
Sbjct: 185 GFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVC--WTAVISTLARNDRFREAV 242

Query: 180 ALYFQMEEEGV--EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237
            ++F M + G+  E D FTF  +L AC  LG +R+G +VH   V  G   + FV ++L+D
Sbjct: 243 RVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLD 302

Query: 238 MYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI---FRGMILNGFDPD 294
           MY KCG++  AR VFD +  K+ ++  +ML  Y H+G       +   +R M+      D
Sbjct: 303 MYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWRSMV------D 356

Query: 295 PVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
             +  +I+   S L   R G +VH   +RRG   D+ + ++L+ +Y+K G +D A  LF 
Sbjct: 357 VYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFS 416

Query: 352 HMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            M  +++++WN++I   +++    E +  FE+M ++GV PD ++FV++L AC+H G V  
Sbjct: 417 RMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLFACSHNGLVDQ 476

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G R F +M  +YGI P V HY CM+++ GRA LI+EA S++ E  +       W  LL A
Sbjct: 477 GRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLL-ESADCRYDHSRWAVLLGA 535

Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           C    +    E  A+K+ +LEPD   ++ LL  IY   G+ ++   + +++ +RG++
Sbjct: 536 CTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIRKLMEERGVK 592



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 211/436 (48%), Gaps = 21/436 (4%)

Query: 40  RNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLE 99
           ++R + F+S    +  P  T  +     KL AL   +  L++  Q    ++   +ASLL+
Sbjct: 7   KSRFSIFTS----TVVPSRTESQILHHCKLGALPKALILLKAQAQ-AQALKPVVYASLLQ 61

Query: 100 TCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158
            C +  +   G  LH  ++ +  L      +S L           +A  +FD +  +   
Sbjct: 62  ACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDALPFKDVI 121

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           A  W S+ISG+ +  + + A+ L+ QM  + +EP+ FT   +LKAC+ L  + +G+ +H 
Sbjct: 122 A--WTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGKTLH- 178

Query: 219 DAVRFGFGF---DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
            AV F  GF   +  V  AL+DMY +   +  AR VFD +   D + + ++++    +  
Sbjct: 179 -AVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDR 237

Query: 276 LVEAFDIFRGMILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
             EA  +F  M     G + D     ++L    N   LR+G +VHG V+  G++ ++ + 
Sbjct: 238 FREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVE 297

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH 390
           +SL+ +Y K G++  A  +FD + +K+ V+  +++  +  + E       +     + D 
Sbjct: 298 SSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWRSMVDV 357

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
            +F +++ AC+ L +V+ G  +    V + G    V   A +V+LY + G +D AY +  
Sbjct: 358 YSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESA-LVDLYAKCGSVDFAYRLF- 415

Query: 451 EKMEFEASPVVWGALL 466
            +ME   + + W A++
Sbjct: 416 SRMEAR-NLITWNAMI 430


>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 249/453 (54%), Gaps = 15/453 (3%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT--F 139
           S   G   + E   S+ + C  +K +E   +LH  +    L +N  +  K++   A    
Sbjct: 42  SENEGFDSREERVMSVFKQCESMKHLE---QLHAHVIQTGLEQNLFVMGKIIVFCAVSEC 98

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +D A +VF ++ N   F   WN++I G     + E A   Y +M+ +G   D FT+  
Sbjct: 99  GSMDYALRVFGKIENPDGFL--WNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSF 156

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           ++K C  LG   +G+++H + ++ G     FV N LV MY    DI  A  +F+ +    
Sbjct: 157 LVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSY 216

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASL--LRIGAQVHG 316
           L+++N+++   ++ G   EA ++F  M+ +G  PD    + ++ A A+L  L IG +VH 
Sbjct: 217 LVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHS 276

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHE 373
            +   G+   + ++NSLI +Y+K G ++ A  +F+ M  +++VSWN++I     H    E
Sbjct: 277 CIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDE 336

Query: 374 ALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           AL  F +M E     P+ +TF+ +L AC+H G V+ G R F +M   Y I P ++HY  M
Sbjct: 337 ALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSM 396

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
           V++ GRAGL++EAY +I + M  E++ +VW  LL AC +HGN+ + E   Q L ELEPD+
Sbjct: 397 VDILGRAGLVEEAYRLI-KSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPDH 455

Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             ++ LL  +Y +AG+ + V RV + +  RG++
Sbjct: 456 SSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQ 488


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/408 (34%), Positives = 223/408 (54%), Gaps = 48/408 (11%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           KN    + ++  Y   G +DEA+++F Q+S R +    WNS+I+GYA  G  ++A+ L+ 
Sbjct: 324 KNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVC--WNSMITGYAHCGRTDEALRLFQ 381

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M                              V  D V +         N ++  YA+ G
Sbjct: 382 EM------------------------------VCKDMVSW---------NTMIAAYAQAG 402

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            + KA  +F+ +  ++++S+NS++TGY+ +GL  EA + F  M   G  PD   I   L 
Sbjct: 403 QMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLR 462

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             AN + L +G Q+H   ++ G   DL + N+++ +Y+K G++ +A  +F  +  KDVVS
Sbjct: 463 ASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVS 522

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WNS+I  ++ +    EA+  FE M   G++PD +TF  LLSAC H G V  G  LF  M 
Sbjct: 523 WNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMT 582

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           E Y I P+ EHYAC++NL GR G ++EA   IV+ M+  +S  +WGALL+AC +H N+ +
Sbjct: 583 ETYSIKPQSEHYACVINLLGRVGRLEEAVE-IVQGMKTVSSAKIWGALLWACRIHHNLEL 641

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + +A++L  LEP N  N+ LL  ++  AGR D VERV  ++ +   E
Sbjct: 642 AKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAE 689



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 173/369 (46%), Gaps = 70/369 (18%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  +A +G + EA  +F++M  +   +  WN++I  Y    + +DA  L+ +M E+   
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNLVS--WNAMIGAYVRENQIDDAYKLFMEMPEK--- 293

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
                                               D     A+++ Y + G +++AR +
Sbjct: 294 ------------------------------------DSVSWTAMINGYVRVGKLLQAREI 317

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS----- 306
            + +  K++ +  +M+ GY+  G + EA +IF  + +     D V  +S++   +     
Sbjct: 318 LNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVR----DSVCWNSMITGYAHCGRT 373

Query: 307 --LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              LR+  ++   V +  V W     N++I  Y++ G++D+A  +F+ M +++VVSWNS+
Sbjct: 374 DEALRLFQEM---VCKDMVSW-----NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++    EAL  F  M++ G  PD  T V  L A A+L ++ VG +L  + + K G
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTI-KTG 484

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
               +     ++ +Y ++G + EA ++  E    +   V W +L+    L+G  C  E  
Sbjct: 485 FGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDV--VSWNSLIAGYALNG--CGKE-- 538

Query: 482 AQKLFELEP 490
           A +LFE+ P
Sbjct: 539 AVELFEVMP 547



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 52/317 (16%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N+++  YAK G I  AR +FD +  ++L+S+NSM+ GY+H+ L+ +A  +F  M    F 
Sbjct: 50  NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM----FK 105

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGV--EWDLCIANSLIVVYSKDGKLDQACWLF 350
            D    S  L      RIG       L   +  + D    N+LI  Y+K     +A  LF
Sbjct: 106 RD--IYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLF 163

Query: 351 DHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQM-ERDGV-------------------- 386
           D M  K+VVSWNSI+  ++K+ +    L +FE M ER+ V                    
Sbjct: 164 DEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWM 223

Query: 387 ------LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
                  P+ +++V++LS  AH G +     LF+ M  K  +S     +  M+  Y R  
Sbjct: 224 FFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVS-----WNAMIGAYVREN 278

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE-TAAQKLFELEP-DNEHNFEL 498
            ID+AY + +E  E ++  V W A+     ++G V +G+   A+++  L P  N      
Sbjct: 279 QIDDAYKLFMEMPEKDS--VSWTAM-----INGYVRVGKLLQAREILNLMPYKNIAAQTA 331

Query: 499 LIKIYGNAGRLDDVERV 515
           +I  Y  +GR+D+   +
Sbjct: 332 MINGYLQSGRMDEANEI 348



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 191/407 (46%), Gaps = 52/407 (12%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           ++   N++  N  IS+     YA  G I  A ++FD M  R   +  WNS+I+GY     
Sbjct: 40  KMTERNIVTYNSMISA-----YAKNGRIANARELFDLMPQRNLVS--WNSMIAGYLHNEL 92

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-----DG 229
            EDA  L+ +M     + D +++  ++         R+GE   L+  R  F       D 
Sbjct: 93  VEDAARLFDRM----FKRDIYSWTLMITC-----YTRIGE---LEKARELFNLLPDKQDT 140

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
              NAL+  YAK     +A+ +FD +  K+++S+NS+L+GY  +G +      F  M   
Sbjct: 141 VCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM--- 197

Query: 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA-NSLIVVYSKDGKLDQACW 348
               +   +S  L     + +G     W+  + +     ++  +++  ++  G++ +A  
Sbjct: 198 ---GERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARN 254

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEA----LIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
           LF+ MP K++VSWN++I A+ ++++      ++ E  E+D V     ++ ++++    +G
Sbjct: 255 LFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSV-----SWTAMINGYVRVG 309

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA 464
            +     + ++M  K      +     M+N Y ++G +DEA + I  ++    S V W +
Sbjct: 310 KLLQAREILNLMPYK-----NIAAQTAMINGYLQSGRMDEA-NEIFSQISVRDS-VCWNS 362

Query: 465 LLYACYLHGNVCMGETAAQKLF-ELEPDNEHNFELLIKIYGNAGRLD 510
           ++   Y H   C     A +LF E+   +  ++  +I  Y  AG++D
Sbjct: 363 MITG-YAH---CGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMD 405



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q G      T    L     L A+  G++LH L        +  + + +L +YA  G + 
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVP 506

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA  VF ++  +   +  WNSLI+GYA  G  ++A+ L+  M   G+ PD+ TF  +L A
Sbjct: 507 EAENVFAEIKXKDVVS--WNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 204 CAGLGLIRVG 213
           C   G +  G
Sbjct: 565 CNHGGFVDQG 574



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 18/197 (9%)

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEA 374
           V  +  E ++   NS+I  Y+K+G++  A  LFD MPQ+++VSWNS+I  +  +    +A
Sbjct: 37  VFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDA 96

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F++M +     D  ++  +++    +G ++    LF+++ +K     R      ++ 
Sbjct: 97  ARLFDRMFKR----DIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCR----NALIA 148

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNE 493
            Y +  L  EA  +  E +    + V W ++L     +G + +G     + FE +   N 
Sbjct: 149 GYAKKRLFREAKKLFDEML--VKNVVSWNSILSGYTKNGKMQLG----LQFFEAMGERNV 202

Query: 494 HNFELLIKIYGNAGRLD 510
            ++ L++  Y   G LD
Sbjct: 203 VSWNLMVDGYVGVGDLD 219


>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Brachypodium distachyon]
          Length = 596

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 232/458 (50%), Gaps = 49/458 (10%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           H +   R   T+L      +S+ L+  YA  G I  A  VFD+M  R   +  WNSLIS 
Sbjct: 139 HALAFLRGFGTDLF-----VSNGLVTAYANTGDIRSARAVFDEMPRRDVVS--WNSLISA 191

Query: 169 YAELGEYEDAIALYFQMEEE----GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
              +G Y + + L+  +       GV+P+  T   VL +CA L  +  G  V   A   G
Sbjct: 192 CTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAAESG 251

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
              D    N++V  YAKCG +  AR + +R+  KD +SY++M+TGY+++G + E   +FR
Sbjct: 252 LDMDIATWNSVVGFYAKCGRLQHARELLERMPKKDTVSYSAMITGYMNNGHVEEGMSLFR 311

Query: 285 ---------------GMILNGFDPDPVAI------SSILANASLLRI------------G 311
                          G+I NG   D + +      +S+L NA+ L I            G
Sbjct: 312 QADAKGINTWNALISGLIQNGRQSDVLGLLHEMIGASLLPNAATLSIIIPSVPLFSTLLG 371

Query: 312 A-QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HA 367
           A Q HG+V+R   +    + ++LI  YSK G LD A  +F+    +  + W SII    A
Sbjct: 372 AKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFLDMAKKVFEWDENRSTIVWTSIIAAVAA 431

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H     AL  F QM R G  PD +TF  +L+ACAH+G V     +F  M   +GISP +E
Sbjct: 432 HGDVAAALGLFNQMVRAGTCPDTVTFTVVLTACAHVGKVAEAREVFDSMQTVFGISPVME 491

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
            YAC+ ++  RAG++ +A  + V KM FE +  VWGALL      G+V +G  A  +LF 
Sbjct: 492 QYACIASVLSRAGMLTDALEL-VNKMPFEPNAKVWGALLNGAAAVGDVQLGRFAFDRLFM 550

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +EP N  N+ ++  +Y NAG+ +D E +  ML   GLE
Sbjct: 551 IEPKNTGNYIVMANLYSNAGKWEDAEIIRSMLWGVGLE 588



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 209/441 (47%), Gaps = 57/441 (12%)

Query: 92  ETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
             +  L++ C     +  G +LH RL+  +++  N  ++SKL+ LY+    + +A +VFD
Sbjct: 15  RVYGHLIQLCADSGHLAAGQQLHARLVALSVIPSNF-LASKLISLYSRTARLHDARRVFD 73

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA----G 206
            +     FA  WN+++   + L   E + AL       GV PD+ T   +LK+ A    G
Sbjct: 74  AIPQPNLFA--WNAILIALS-LHSPEPSAALRL-FAGSGVSPDEVTVSALLKSLAASGTG 129

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L  +  GE +H  A   GFG D FV N LV  YA  GDI  AR VFD +  +D++S+NS+
Sbjct: 130 LSPLVTGE-IHALAFLRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSWNSL 188

Query: 267 LTGYIHHGLLVEAFDIFRGMI----LNGFDPDPVAISSILANASLLR---IGAQVHGWVL 319
           ++     G   E  ++F G++    + G  P+ V ++S+L + + L+    G  V     
Sbjct: 189 ISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAA 248

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
             G++ D+   NS++  Y+K G+L  A  L + MP+KD VS++++I  +  +    E + 
Sbjct: 249 ESGLDMDIATWNSVVGFYAKCGRLQHARELLERMPKKDTVSYSAMITGYMNNGHVEEGMS 308

Query: 377 YFEQMERDGV---------------------LPDHLTFVSLLSACAHLGSVKVGERLFSV 415
            F Q +  G+                     L   +   SLL   A L  +     LFS 
Sbjct: 309 LFRQADAKGINTWNALISGLIQNGRQSDVLGLLHEMIGASLLPNAATLSIIIPSVPLFST 368

Query: 416 MV---EKYGISPRVEH------YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           ++   + +G   R ++       + +++ Y +AG +D A    V + +   S +VW +++
Sbjct: 369 LLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFLDMAKK--VFEWDENRSTIVWTSII 426

Query: 467 YACYLHGNVCMGETAAQKLFE 487
            A   HG+V     AA  LF 
Sbjct: 427 AAVAAHGDV----AAALGLFN 443



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 137/279 (49%), Gaps = 19/279 (6%)

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            V PD   +  +++ CA  G +  G+++H   V        F+ + L+ +Y++   +  A
Sbjct: 9   AVPPDPRVYGHLIQLCADSGHLAAGQQLHARLVALSVIPSNFLASKLISLYSRTARLHDA 68

Query: 249 RTVFDRIGNKDLISYNSMLTGY-IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           R VFD I   +L ++N++L    +H      A  +F G   +G  PD V +S++L + + 
Sbjct: 69  RRVFDAIPQPNLFAWNAILIALSLHSPEPSAALRLFAG---SGVSPDEVTVSALLKSLAA 125

Query: 308 LRIG------AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
              G       ++H     RG   DL ++N L+  Y+  G +  A  +FD MP++DVVSW
Sbjct: 126 SGTGLSPLVTGEIHALAFLRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSW 185

Query: 362 NSIIHAHSKD---HEALIYFEQMER----DGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           NS+I A ++     E L  F  + R     GV P+++T  S+L +CA L +V  G  +  
Sbjct: 186 NSLISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSCAQLKAVDFGVNVLR 245

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           V  E  G+   +  +  +V  Y + G +  A  ++ E+M
Sbjct: 246 VAAES-GLDMDIATWNSVVGFYAKCGRLQHARELL-ERM 282



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 161/401 (40%), Gaps = 82/401 (20%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     T  S+L +C QLKAV+ G+ + R+   + L  +    + ++  YA  G +  A
Sbjct: 216 GVQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHA 275

Query: 146 HQVFDQMSNRTAFAFP-----------------------------WNSLISGYAELGEYE 176
            ++ ++M  +   ++                              WN+LISG  + G   
Sbjct: 276 RELLERMPKKDTVSYSAMITGYMNNGHVEEGMSLFRQADAKGINTWNALISGLIQNGRQS 335

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           D + L  +M    + P+  T   ++ +      +   ++ H   +R  +     V++AL+
Sbjct: 336 DVLGLLHEMIGASLLPNAATLSIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALI 395

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
           D Y+K G +  A+ VF+   N+  I + S++     HG +  A  +F  M+  G  PD V
Sbjct: 396 DAYSKAGFLDMAKKVFEWDENRSTIVWTSIIAAVAAHGDVAAALGLFNQMVRAGTCPDTV 455

Query: 297 AISSILANASLLRIGAQVHG--------WVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             + +L   + +   A+           + +   +E   CIA+    V S+ G L  A  
Sbjct: 456 TFTVVLTACAHVGKVAEAREVFDSMQTVFGISPVMEQYACIAS----VLSRAGMLTDALE 511

Query: 349 LFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
           L + MP                       FE        P+   + +LL+  A +G V++
Sbjct: 512 LVNKMP-----------------------FE--------PNAKVWGALLNGAAAVGDVQL 540

Query: 409 G----ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           G    +RLF +  +  G      +Y  M NLY  AG  ++A
Sbjct: 541 GRFAFDRLFMIEPKNTG------NYIVMANLYSNAGKWEDA 575


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 216/379 (56%), Gaps = 6/379 (1%)

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S+  + +F ++SL       G    A+A Y  +    +    F F  V KACA L  +R 
Sbjct: 64  SHPASDSFLFSSLARAATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRT 123

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH  ++  GFG D FVL ALV +Y+KCG +  AR +FD I +K+++++N+M++GY  
Sbjct: 124 GMTVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQ 183

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL  +  ++++ M +    PD    VA  S  A A  L +G +V   ++   ++  + +
Sbjct: 184 NGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFL 243

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            ++L+ +Y++ G +D+A   FD + +++VV+W S+I     H   HEA+  +  M   G 
Sbjct: 244 GSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGP 303

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV++LSACAH G +  G   F+ M   YG++PRVEHY  MV++YGRAG ++EA 
Sbjct: 304 PPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAM 363

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + M  +  P VW A+L AC +H N  +G   A++L  LEP+N     LL  IY  +
Sbjct: 364 QFIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALS 423

Query: 507 GRLDDVERVERMLVDRGLE 525
           G++  VE+V   ++ R L+
Sbjct: 424 GKMYHVEKVRNTMIKRRLK 442



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF + L  C Q  A++ G ++ R I +  +  +  + S L+ +YA  G++D+A Q FD +
Sbjct: 208 TFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVL 267

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      W S+I+GY   G   +AI LY  M  +G  P+  TF  VL ACA  GLI  
Sbjct: 268 QERNVVT--WTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITE 325

Query: 213 GEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKA 248
           G        R +G         ++VDMY + G + +A
Sbjct: 326 GRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEA 362


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 241/448 (53%), Gaps = 13/448 (2%)

Query: 86  GITVQTETFASLLETCYQLKA-VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           G+     T   +L  C +L + +  G  LH  +  + +R +  + + LL +Y     ++ 
Sbjct: 351 GVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVES 410

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
             ++FD+M      +  WN++I   A       A  L+ +M E  ++P+ +T   +L AC
Sbjct: 411 VQKIFDRMKGVDIIS--WNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 468

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             +  +  G  +H   ++     +  +  AL DMY  CGD   AR +F+   ++DLIS+N
Sbjct: 469 EDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWN 528

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRR 321
           +M+  Y+ +    +A  +F  MI    +P+ V I ++L++ + L     G  +H +V RR
Sbjct: 529 AMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIINVLSSFTHLATLPQGQSLHAYVTRR 587

Query: 322 GVEW--DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALI 376
           G     DL +AN+ I +Y++ G L  A  +F  +P+++++SWN++I  +    +  +A++
Sbjct: 588 GFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAML 647

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM  DG  P+ +TFVS+LSAC+H G +++G +LF  MV+ + ++P + HY+C+V+L 
Sbjct: 648 AFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLL 707

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
            R G IDEA   I + M  E    VW ALL +C  + +    +T  +KL +LEP N  N+
Sbjct: 708 ARGGCIDEAREFI-DSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNY 766

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL  +Y  AG   +V R+   L ++GL
Sbjct: 767 VLLSNVYATAGLWLEVRRIRTWLKEKGL 794



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 203/406 (50%), Gaps = 15/406 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           QA+ S    +ES    G+     T   +L+ C    AVE G  +HR I    L  +  + 
Sbjct: 35  QAILSAYTQMESL---GVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVG 91

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + ++  Y   G +++A  VFD MS+R      WN+++ GY   G YE+A+ L  +M  E 
Sbjct: 92  TAVVDFYCKCGFVEDARCVFDAMSDRDVVL--WNAMVYGYVGWGCYEEAMLLVREMGREN 149

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKA 248
           + P+  T   +L AC G   +R+G  VH   +R G F  +  V  AL+  Y +  D+   
Sbjct: 150 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVL 208

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASL 307
             +FD +  ++++S+N+M++GY   G   +A ++F  M+++    D V  + ++ A A L
Sbjct: 209 PLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAEL 268

Query: 308 --LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
             L++G Q+H   ++     DL I N+L+ +YS +G L+ +  LF+ +P +D   WNS+I
Sbjct: 269 GSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 328

Query: 366 HAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
            A++      EA+  F +M+ +GV  D  T V +LS C  L S  +  +     V K G+
Sbjct: 329 SAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGM 388

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
                    ++++Y     + E+   I ++M+     + W  ++ A
Sbjct: 389 RIDASLGNALLSMYTELNCV-ESVQKIFDRMK-GVDIISWNTMILA 432



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 200/397 (50%), Gaps = 23/397 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQV 148
            + T  +LL  C     +  G  +H     N +   N  +++ L+  Y  F +      +
Sbjct: 153 NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDM-RVLPLL 211

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           FD M  R   +  WN++ISGY ++G+Y  A+ L+ QM  + V+ D  T    ++ACA LG
Sbjct: 212 FDLMVVRNIVS--WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELG 269

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
            +++G+++H  A++F F  D ++LNAL++MY+  G +  +  +F+ + N+D   +NSM++
Sbjct: 270 SLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMIS 329

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVE 324
            Y   G   EA D+F  M   G   D   +  +L+     AS L  G  +H  V++ G+ 
Sbjct: 330 AYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMR 389

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQM 381
            D  + N+L+ +Y++   ++    +FD M   D++SWN++I A +++    +A   FE+M
Sbjct: 390 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 449

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
               + P+  T +S+L+AC  +  +  G  +    V K+ I         + ++Y   G 
Sbjct: 450 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGY-VMKHSIEINQPLRTALADMYMNCG- 507

Query: 442 IDEAYSMIVEKMEFEASP----VVWGALLYACYLHGN 474
            DEA +    +  FE  P    + W A++ A Y+  N
Sbjct: 508 -DEATA----RDLFEGCPDRDLISWNAMI-ASYVKNN 538



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 167/322 (51%), Gaps = 27/322 (8%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH---- 217
           WNS+I   A L   +  ++ Y QME  GV P+  T P VLKACA    +  G+ +H    
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 218 ----LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
               +D VR G         A+VD Y KCG +  AR VFD + ++D++ +N+M+ GY+  
Sbjct: 81  GTDLMDDVRVG--------TAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 132

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV-EWDLCI 329
           G   EA  + R M      P+   + ++L     AS LR+G  VHG+ LR G+ + +  +
Sbjct: 133 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHV 192

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGV 386
           A +LI  Y +   +     LFD M  +++VSWN++I  +       +AL  F QM  D V
Sbjct: 193 ATALIGFYLR-FDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 251

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
             D +T +  + ACA LGS+K+G+++  + + K+     +     ++N+Y   G ++ ++
Sbjct: 252 KFDCVTMLVAVQACAELGSLKLGKQIHQLAI-KFEFVEDLYILNALLNMYSNNGSLESSH 310

Query: 447 SMIVEKMEFEASPVVWGALLYA 468
            +  E +    +P +W +++ A
Sbjct: 311 QLF-ESVPNRDAP-LWNSMISA 330


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 285/555 (51%), Gaps = 45/555 (8%)

Query: 5   LYPPSSF---HTSLVIIHCGS-KNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTN 60
           L PPS++   H +L+   CGS  N ++     Q     S N  T  ++Y K S   +   
Sbjct: 39  LIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSYN--TLINAYAKHSLIHIA-- 94

Query: 61  QKAF---PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLI 117
           ++ F   P+  + + +++I       + G T++      L E   +L+    G  L  +I
Sbjct: 95  RRVFDEIPQPDIVSYNTLIAAYADRGECGPTLR------LFEEVRELRLGLDGFTLSGVI 148

Query: 118 PT-----NLLRK------------NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-A 159
                   L+R+               +++ +L  Y+  G + EA +VF +M        
Sbjct: 149 TACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDE 208

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WN++I    +  E  +A+ L+ +M   G++ D FT   VL A   +  +  G + H  
Sbjct: 209 VSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGM 268

Query: 220 AVRFGFGFDGFVLNALVDMYAKC-GDIVKARTVFDRIGNKDLISYNSMLTGY-IHHGLLV 277
            ++ GF  +  V + L+D+Y+KC G +V+ R VF+ I   DL+ +N+M++G+ ++  L  
Sbjct: 269 MIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSE 328

Query: 278 EAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSL 333
           +    FR M  NGF PD    V ++S  +N S   +G QVH   ++  V ++ + + N+L
Sbjct: 329 DGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNAL 388

Query: 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH 390
           + +YSK G +  A  +FD MP+ + VS NS+I     H  + E+L  FE M    + P+ 
Sbjct: 389 VAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNS 448

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TF+++LSAC H G V+ G++ F++M E++ I P  EHY+CM++L GRAG + EA   I+
Sbjct: 449 ITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEA-ERII 507

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           E M F    + W  LL AC  HGNV +   AA +   LEP N   + +L  +Y +A R +
Sbjct: 508 ETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWE 567

Query: 511 DVERVERMLVDRGLE 525
           +   V+R++ +RG++
Sbjct: 568 EAATVKRLMRERGVK 582



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 56/317 (17%)

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART----- 250
           TF  +LKAC     +  G+ +H    +       ++ N    +Y+KCG +  A+T     
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 251 --------------------------VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
                                     VFD I   D++SYN+++  Y   G       +F 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 285 G-----MILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
                 + L+GF    V I++   +  L+R   Q+H +V+  G +    + N+++  YS+
Sbjct: 131 EVRELRLGLDGFTLSGV-ITACGDDVGLVR---QLHCFVVVCGHDCYASVNNAVLACYSR 186

Query: 340 DGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
            G L +A  +F  M +   +D VSWN++I A   H +  EA+  F +M R G+  D  T 
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTM 246

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
            S+L+A   +  + VG R F  M+ K G        + +++LY +      A SM+  + 
Sbjct: 247 ASVLTAFTCVKDL-VGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKC-----AGSMVECRK 300

Query: 454 EFE--ASP--VVWGALL 466
            FE   +P  V+W  ++
Sbjct: 301 VFEEITAPDLVLWNTMI 317


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 253/461 (54%), Gaps = 14/461 (3%)

Query: 70  QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
           +AL  ++Q  E+    G    + T  S+L     +KA+  G  +H     +       ++
Sbjct: 229 RALQLVLQMQEA----GQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVT 284

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + LL +Y   G    A  VF  M ++T  +  WN++I G A+ GE E+A A + +M +EG
Sbjct: 285 NALLDMYFKCGSARIARLVFKGMRSKTVVS--WNTMIDGCAQNGESEEAFATFLKMLDEG 342

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
             P + T   VL ACA LG +  G  VH    +     +  V+N+L+ MY+KC  +  A 
Sbjct: 343 EVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAA 402

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANAS 306
           ++F+ +  K  +++N+M+ GY  +G + EA ++F  M   G   D    V + + LA+ S
Sbjct: 403 SIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS 461

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
           + R    +HG  +R  ++ ++ ++ +L+ +Y+K G +  A  LFD M ++ V++WN++I 
Sbjct: 462 VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMID 521

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               H    E L  F +M++  V P+ +TF+S++SAC+H G V+ G  LF  M E Y + 
Sbjct: 522 GYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLE 581

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P ++HY+ MV+L GRAG +D+A++ I E M  +    V GA+L AC +H NV +GE AAQ
Sbjct: 582 PTMDHYSAMVDLLGRAGQLDDAWNFIQE-MPIKPGISVLGAMLGACKIHKNVELGEKAAQ 640

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           KLF+L+PD      LL  IY +    D V +V   + D+GL
Sbjct: 641 KLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGL 681



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 233/464 (50%), Gaps = 55/464 (11%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +A LL+ C +   ++ G ++H LI TN    N  + + ++ LYA    ID A+++F++M 
Sbjct: 148 YACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQ 207

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           ++   +  W +L++GYA+ G  + A+ L  QM+E G +PD  T   +L A A +  +R+G
Sbjct: 208 HKDLVS--WTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIG 265

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
             +H  A R GF     V NAL+DMY KCG    AR VF  + +K ++S+N+M+ G   +
Sbjct: 266 RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQN 325

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G   EAF  F  M+  G  P  V +  +L   AN   L  G  VH  + +  ++ ++ + 
Sbjct: 326 GESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVM 385

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           NSLI +YSK  ++D A  +F+++ +K  V+WN++I  ++++    EAL  F  M+  G+ 
Sbjct: 386 NSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIK 444

Query: 388 PDHLTFVSLLSACAHL-----------------------------------GSVKVGERL 412
            D  T V +++A A                                     G++K   +L
Sbjct: 445 LDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKL 504

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACY 470
           F +M E++ I+     +  M++ YG  G+  E   +  E  +    P  + + +++ AC 
Sbjct: 505 FDMMQERHVIT-----WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACS 559

Query: 471 LHGNVCMGE---TAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
             G V  G     + Q+ + LEP  +H +  ++ + G AG+LDD
Sbjct: 560 HSGFVEEGLLLFKSMQEDYYLEPTMDH-YSAMVDLLGRAGQLDD 602



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 198/405 (48%), Gaps = 28/405 (6%)

Query: 97  LLETCYQLKAVEHGIKLHRLIP---TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           LLE C   K      +L++++P    N         +K++ L+  FG   EA +VF+ + 
Sbjct: 53  LLENCTSKK------ELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVE 106

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            +      ++ ++ GYA+     DA+  + +M  + V      +  +L+ C     ++ G
Sbjct: 107 LK--LDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKG 164

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            ++H   +  GF  + FV+ A++ +YAKC  I  A  +F+R+ +KDL+S+ +++ GY  +
Sbjct: 165 REIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQN 224

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G    A  +   M   G  PD V + SIL   A+   LRIG  +HG+  R G E  + + 
Sbjct: 225 GHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVT 284

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           N+L+ +Y K G    A  +F  M  K VVSWN++I   +++    EA   F +M  +G +
Sbjct: 285 NALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV 344

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P  +T + +L ACA+LG ++ G      +++K  +   V     ++++Y +   +D A S
Sbjct: 345 PTRVTMMGVLLACANLGDLERG-WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAAS 403

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGNV-------CMGETAAQKL 485
           +       E + V W A++     +G V       CM ++   KL
Sbjct: 404 IF---NNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKL 445


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 248/449 (55%), Gaps = 13/449 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI       AS L+ C  +  +  G ++H L     L +     S L+ +Y+  G+I++A
Sbjct: 524 GIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDA 583

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF  M   +  +   N+LI+GY++    E+A+ L+ +M  +GV P + TF  +++AC 
Sbjct: 584 RKVFSSMPEWSVVSM--NALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSEITFATIVEACH 640

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLN-ALVDMYAKCGDIVKARTVFDRIGN-KDLISY 263
               + +G + H   +++GF  +G  L  +L+ +Y     + +A  +F  + + K ++ +
Sbjct: 641 KPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLW 700

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLR 320
             M++G+  +G   EA   ++ M  +G  PD     ++L   S+L   R G  +H  +  
Sbjct: 701 TGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFH 760

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALI 376
              + D   +N+LI +Y+K G +  +  +FD M ++ +VVSWNS+I+ ++K+    +AL 
Sbjct: 761 LAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALK 820

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F+ M +  ++PD +TF+ +L+AC+H G V  G ++F +M+ +YGI  RV+H ACMV+L 
Sbjct: 821 IFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLL 880

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR G + EA   I E    +    +W +LL AC +HG+   GE AA++L ELEP N   +
Sbjct: 881 GRWGYLQEADDFI-EAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAY 939

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            LL  IY + GR ++   + + + DRG++
Sbjct: 940 VLLSNIYASQGRWEEANALRKAMRDRGVK 968



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 201/389 (51%), Gaps = 10/389 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++ +     T  S+L     +  ++ G+ +H       L  N  + S L+ +Y+    ++
Sbjct: 320 KSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKME 379

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A +VF+ +  R      WN++I GYA  GE    + L+  M+  G   D FTF  +L  
Sbjct: 380 AAAKVFEALEERNDVL--WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    + +G + H   ++     + FV NALVDMYAKCG +  AR +F+ + ++D +S+
Sbjct: 438 CAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSW 497

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N+++ GY+      EAFD+F  M   G   D   ++S L    N   L  G QVH   ++
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVK 557

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH--EALIYF 378
            G++  L   +SLI +YSK G ++ A  +F  MP+  VVS N++I  +S+++  EA++ F
Sbjct: 558 CGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNLEEAVVLF 617

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYG 437
           ++M   GV P  +TF +++ AC    S+ +G + F   + K+G S   E+    ++ LY 
Sbjct: 618 QEMLTKGVNPSEITFATIVEACHKPESLTLGTQ-FHGQIIKWGFSSEGEYLGISLLGLYM 676

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +  + EA ++  E +    S V+W  ++
Sbjct: 677 NSRRMAEACALFSE-LSSPKSIVLWTGMM 704



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 176/320 (55%), Gaps = 9/320 (2%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           ++  Y + G + +A  +F +M +    A  WN +ISG+ + G    AI  +  M +  V+
Sbjct: 267 VINTYISLGKLKDARLLFGEMPSPDVVA--WNVMISGHGKRGCEIVAIEYFLNMRKSSVK 324

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
             + T   VL A   +  + +G  VH +A++ G   + +V ++LV MY+KC  +  A  V
Sbjct: 325 STRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKV 384

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---L 308
           F+ +  ++ + +N+M+ GY H+G   +  ++F  M  +G++ D    +S+L+  ++   L
Sbjct: 385 FEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDL 444

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +G+Q H  ++++ +  +L + N+L+ +Y+K G L+ A  +F+HM  +D VSWN+II  +
Sbjct: 445 EMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGY 504

Query: 369 SKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            +D    EA   F +M   G++ D     S L AC ++  +  G+++  + V K G+   
Sbjct: 505 VQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSV-KCGLDRV 563

Query: 426 VEHYACMVNLYGRAGLIDEA 445
           +   + ++++Y + G+I++A
Sbjct: 564 LHTGSSLIDMYSKCGIIEDA 583



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 184/407 (45%), Gaps = 37/407 (9%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
            FSS P+ S   +      + +  L+    + Q++   +  G+     TFA+++E C++ 
Sbjct: 586 VFSSMPEWSVVSMNALIAGYSQNNLEEAVVLFQEM---LTKGVNPSEITFATIVEACHKP 642

Query: 105 KAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           +++  G + H ++I      + + +   LL LY     + EA  +F ++S+  +    W 
Sbjct: 643 ESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVL-WT 701

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
            ++SG+++ G YE+A+  Y +M  +G  PDQ TF  VL+ C+ L  +R G  +H      
Sbjct: 702 GMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHL 761

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDI 282
               D    N L+DMYAKCGD+  +  VFD +  + +++S+NS++ GY  +G   +A  I
Sbjct: 762 AHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKI 821

Query: 283 FRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342
           F  M  +   PD +    +L   S        H   +  G +    I   +I  Y  + +
Sbjct: 822 FDSMRQSHIMPDEITFLGVLTACS--------HAGKVSDGRK----IFEMMIGQYGIEAR 869

Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
           +D    + D + +     W  +  A           + +E   + PD   + SLL AC  
Sbjct: 870 VDHVACMVDLLGR-----WGYLQEAD----------DFIEAQNLKPDARLWSSLLGACRI 914

Query: 403 LGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSM 448
            G    GE     ++E   + P+    Y  + N+Y   G  +EA ++
Sbjct: 915 HGDDMRGEIAAERLIE---LEPQNSSAYVLLSNIYASQGRWEEANAL 958



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 196/455 (43%), Gaps = 73/455 (16%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITV-------QTETFASLLETCYQLKAVEHGIKLHRLI 117
           P + +    S+++ L SS + G  V         +    LLE C +   +    K+   +
Sbjct: 9   PSSSMFDSFSLVRRLSSSTELGRRVYGHVLPNHDQIHQGLLEICLEQCKLFKSRKVFDEM 68

Query: 118 PTNL---LRKNKGISSK---------------LLRLYATFGLIDEAHQVFDQMSNRTAFA 159
           P  L   LR  K + SK               ++ LYA    +  A + F+ +       
Sbjct: 69  PHRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLEKDVT-- 126

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             WNS++S Y+ +G+    +  +  + E  + P++FTF  VL   A    +  G ++H  
Sbjct: 127 -AWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCS 185

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            ++ G   + +   ALVDMYAKC  +  A+ VFD I + + + +  + +GY+  GL  EA
Sbjct: 186 MIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEA 245

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
             +F  M   G  PD +A  ++                                I  Y  
Sbjct: 246 VIVFERMRGEGHRPDHLAFVTV--------------------------------INTYIS 273

Query: 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSL 396
            GKL  A  LF  MP  DVV+WN +I  H K   +  A+ YF  M +  V     T  S+
Sbjct: 274 LGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSV 333

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           LSA   + ++ +G  + +  + K G++  +   + +V++Y +   + EA + + E +E E
Sbjct: 334 LSAIGIVANLDLGLVVHAEAI-KLGLASNIYVGSSLVSMYSKCEKM-EAAAKVFEALE-E 390

Query: 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
            + V+W A++   Y H     GE+   K+ EL  D
Sbjct: 391 RNDVLWNAMIRG-YAHN----GES--HKVMELFMD 418



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 185/398 (46%), Gaps = 46/398 (11%)

Query: 75  IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134
           +++   S  +N I     TF+ +L T  +   VE G ++H  +    L +N      L+ 
Sbjct: 144 VLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVD 203

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +YA    + +A +VFD + +       W  L SGY + G  E+A+ ++ +M  EG  PD 
Sbjct: 204 MYAKCDRLGDAQRVFDGIVDPNTVC--WTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDH 261

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
             F  V                                   ++ Y   G +  AR +F  
Sbjct: 262 LAFVTV-----------------------------------INTYISLGKLKDARLLFGE 286

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIG 311
           + + D++++N M++G+   G  + A + F  M  +        + S+L+   +   L +G
Sbjct: 287 MPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLG 346

Query: 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHS 369
             VH   ++ G+  ++ + +SL+ +YSK  K++ A  +F+ + +++ V WN++I  +AH+
Sbjct: 347 LVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHN 406

Query: 370 -KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
            + H+ +  F  M+  G   D  TF SLLS CA    +++G +  S++++K  ++  +  
Sbjct: 407 GESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKK-KLTKNLFV 465

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
              +V++Y + G +++A   I E M  +   V W  ++
Sbjct: 466 GNALVDMYAKCGALEDA-RQIFEHM-CDRDNVSWNTII 501



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           +R+G+ VH  ++  G   +G + NA+VD+YAKC  +  A   F+ +  KD+ ++NSML+ 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSM 134

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWD 326
           Y   G   +    F  +  N   P+    S +L+ ++    +  G Q+H  +++ G+E +
Sbjct: 135 YSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERN 194

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMER 383
                +L+ +Y+K  +L  A  +FD +   + V W  +   + K     EA+I FE+M  
Sbjct: 195 SYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRG 254

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG--L 441
           +G  PDHL FV++++    LG +K    LF  M      SP V  +  M++ +G+ G  +
Sbjct: 255 EGHRPDHLAFVTVINTYISLGKLKDARLLFGEMP-----SPDVVAWNVMISGHGKRGCEI 309

Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE-PDNEHNFELLI 500
           +   Y + + K   +++    G++L A  +  N+ +G     +  +L    N +    L+
Sbjct: 310 VAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLV 369

Query: 501 KIYGNAGRLDDVERVERMLVDR 522
            +Y    +++   +V   L +R
Sbjct: 370 SMYSKCEKMEAAAKVFEALEER 391


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 233/401 (58%), Gaps = 11/401 (2%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-V 190
           L+ +Y+       A +VF+ + +R   +  WN+++  Y  +G   +   +   M ++G V
Sbjct: 169 LITIYSYLDDPGAARKVFNGIPSRDVVS--WNAMMKAYGRVGMNGEVGRMLRDMVKDGAV 226

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
            P+  T   VL AC   G + +G  V   +   G   D  V +ALV MY KCG+I +AR 
Sbjct: 227 VPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARR 286

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---L 307
           VFD I +KD++++N+M+TGY  +G+  EA  +F  M   G  PD + ++ +L+  S    
Sbjct: 287 VFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGA 346

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L +G+++ G+   RG+  ++ +  +L+ +Y+K G LD+A  +F  M  K+V SWN++I  
Sbjct: 347 LELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICG 406

Query: 368 ---HSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
              + +  EA+ +FE M   DG+ PD +TF+ +LSAC H G VK G+R F+ +  ++ I 
Sbjct: 407 LAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQII 466

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P++EHY+CMV+L  R+G ++E +  I EK+  +   V+ GALL AC    NV +GE    
Sbjct: 467 PKIEHYSCMVDLLARSGHLEEVWDFI-EKIPDKVDAVMLGALLAACRKCKNVEIGERVIN 525

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           ++ +LEP N  N+ +  KIY ++GRLDD  ++   + +RG+
Sbjct: 526 RIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGV 566



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 181/375 (48%), Gaps = 39/375 (10%)

Query: 79  LESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA 137
           L   V++G  V    T A +L  C     +  G  +     +  +  +  + S L+ +Y 
Sbjct: 217 LRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYE 276

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
             G I EA +VFD + ++   A  WN++I+GYA+ G   +AI+L+  M++ GV PD+ T 
Sbjct: 277 KCGEIAEARRVFDSIIDKDVVA--WNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITL 334

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             VL AC+ +G + +G ++   A   G   + +V  ALVDMYAKCGD+ KA  VF ++  
Sbjct: 335 AGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRC 394

Query: 258 KDLISYNSMLTGYIHHGLLVEA---FDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           K++ S+N+++ G   +G   EA   F++ R    +G  PD +    +L+        A V
Sbjct: 395 KNVASWNALICGLAFNGQGDEAIQHFELMRNE--DGLKPDDITFIGVLS--------ACV 444

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           H  +++ G  W     NSL   +    K++    + D +             A S   E 
Sbjct: 445 HAGLVKDGKRW----FNSLTSEFQIIPKIEHYSCMVDLL-------------ARSGHLEE 487

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMV 433
           +  F +   D V  D +   +LL+AC    +V++GER+ + +++   + P    +Y    
Sbjct: 488 VWDFIEKIPDKV--DAVMLGALLAACRKCKNVEIGERVINRIIQ---LEPTNSWNYVVSS 542

Query: 434 NLYGRAGLIDEAYSM 448
            +Y  +G +D++  M
Sbjct: 543 KIYASSGRLDDSAKM 557


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 148/475 (31%), Positives = 255/475 (53%), Gaps = 54/475 (11%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFDQ 151
           + +LL+ C + +A++ G ++H  I T+    + G  IS++LL +YA  G + +A +VFD+
Sbjct: 122 YLTLLKFCLKQRALKEGKQVHAHIKTS---GSIGLYISNRLLDMYAKCGSLVDAEKVFDE 178

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA------ 205
           M +R   +  WN +ISGY + G +E A  L+ +M       D F++  ++  C       
Sbjct: 179 MVHRDLCS--WNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNRPE 232

Query: 206 -GLGLIRV-----------------------------GEKVHLDAVRFGFGFDGFVLNAL 235
             L L R+                             G+K+H   +R G   D  V  +L
Sbjct: 233 EALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSL 292

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +DMY KCG I +AR +FD++  +D++S+ +M+  Y+ +G   E F +FR ++ +   P+ 
Sbjct: 293 LDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND 352

Query: 296 VAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
              + +L   A+ +   +G Q+H +++R G +     A++L+ +YSK G ++ A  +F+ 
Sbjct: 353 FTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEI 412

Query: 353 MPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           +PQ D+ SW S++     H +  +AL +FE + + G  PD + F+ +LSACAH G V  G
Sbjct: 413 LPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKG 472

Query: 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469
              F  + EK+G++  ++HYAC+++L  RAG   EA S+I E M  +    +W ALL  C
Sbjct: 473 LEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINE-MPIKPDKYIWAALLGGC 531

Query: 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +HGN+ + + AA+ LFE+EP+N   +  L  IY +AG   +   +   +  RG+
Sbjct: 532 RIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGI 586



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 190/399 (47%), Gaps = 78/399 (19%)

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
           +A+ L +++E+    P    +  +LK C     ++ G++VH   ++       ++ N L+
Sbjct: 106 EAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQVHAH-IKTSGSIGLYISNRLL 160

Query: 237 DMYAKCGDIV-------------------------------KARTVFDRIGNKDLISYNS 265
           DMYAKCG +V                               KAR +FD++ N+D  S+ +
Sbjct: 161 DMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTA 220

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFD-PDPVAISSILANASL---LRIGAQVHGWVLRR 321
           +++G + H    EA +++R M  + +   +   ISS LA ++    L +G ++HG ++R 
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G++ D  +  SL+ +Y K G +++A ++FD M ++DVVSW ++IH + K+    E    F
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF 340

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             +    ++P+  TF  +L+ACA L +  +G+++ + MV + G        + +V++Y +
Sbjct: 341 RHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMV-RVGFDSFSSAASALVHMYSK 399

Query: 439 AGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
            G I+ A S+      FE  P      W +LL     HG                    H
Sbjct: 400 CGDIENAKSV------FEILPQPDLFSWTSLLVGYAQHGQ--------------HDKALH 439

Query: 495 NFELLIKIYGNAGRLDDVERVERM-------LVDRGLEF 526
            FELL+K   +  + D +  +  +       LVD+GLE+
Sbjct: 440 FFELLLK---SGTKPDGIAFIGVLSACAHAGLVDKGLEY 475


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 243/428 (56%), Gaps = 20/428 (4%)

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           +G ++H     N L  N  I + L+ +YA    +      F+ M  +   +  W ++I+G
Sbjct: 367 NGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLIS--WTTIIAG 424

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF- 227
           YA+   + +AI L+ +++ +G++ D      VL+AC+GL       ++H      G+ F 
Sbjct: 425 YAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH------GYVFK 478

Query: 228 ----DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
               D  + NA+V++Y + G    AR  F+ I +KD++S+ SM+T  +H+GL VEA ++F
Sbjct: 479 RDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELF 538

Query: 284 RGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
             +      PD +AI S L   AN S L+ G ++HG+++R+G   +  IA+SL+ +Y+  
Sbjct: 539 YSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC 598

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
           G ++ +  +F  + Q+D++ W S+I+A   H   +EA+  F++M  + V+PDH+TF++LL
Sbjct: 599 GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALL 658

Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
            AC+H G +  G+R F +M   Y + P  EHYACMV+L  R+  ++EAY   V  M  + 
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQ-FVRSMPIKP 717

Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
           S  VW ALL AC++H N  +GE AA++L + +  N   + L+  I+   GR +DVE V  
Sbjct: 718 SSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRL 777

Query: 518 MLVDRGLE 525
            +   GL+
Sbjct: 778 RMKGNGLK 785



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 217/387 (56%), Gaps = 18/387 (4%)

Query: 97  LLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           LL+ C  +KA+  G +LH RL+ ++L   +  +++KLL +Y   G + +A +VFD+M+ R
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHL---SAFLATKLLHMYEKCGSLKDAVKVFDEMTER 108

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           T F   WN+++  +   G+Y +AI LY +M   GV  D  TFP VLKAC  LG  R+G +
Sbjct: 109 TIFT--WNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAE 166

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHH 273
           +H  AV+ GFG   FV NAL+ MY KCGD+  AR +FD I    +D +S+NS+++ ++  
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226

Query: 274 GLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           G  +EA  +FR M   G   +    VA    + + S +++G  +HG  L+     D+ +A
Sbjct: 227 GKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVA 286

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           N+LI +Y+K G+++ A  +F  M  +D VSWN+++    ++    +AL YF  M+     
Sbjct: 287 NALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQK 346

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE--- 444
           PD ++ ++L++A    G++  G+ + +  + + G+   ++    ++++Y +   +     
Sbjct: 347 PDQVSVLNLIAASGRSGNLLNGKEVHAYAI-RNGLDSNMQIGNTLIDMYAKCCCVKHMGY 405

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYL 471
           A+  + EK     + ++ G     C+L
Sbjct: 406 AFECMHEKDLISWTTIIAGYAQNECHL 432



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 205/399 (51%), Gaps = 20/399 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +   TF S+L+ C  L     G ++H +       +   + + L+ +Y   G +  A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGA 199

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD +         WNS+IS +   G+  +A++L+ +M+E GV  + +TF   L+   
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +++G  +H  A++     D +V NAL+ MYAKCG +  A  VF  +  +D +S+N+
Sbjct: 260 DPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNT 319

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NASLLRIGAQVHGWVLRR 321
           +L+G + + L  +A + FR M  +   PD V++ +++A    + +LL  G +VH + +R 
Sbjct: 320 LLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLN-GKEVHAYAIRN 378

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G++ ++ I N+LI +Y+K   +    + F+ M +KD++SW +II  ++++    EA+  F
Sbjct: 379 GLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLF 438

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +++  G+  D +   S+L AC+ L S      +   + ++      +++   +VN+YG 
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQN--AIVNVYGE 496

Query: 439 AGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHG 473
            G  D A      +  FE+      V W +++  C  +G
Sbjct: 497 VGHRDYA------RRAFESIRSKDIVSWTSMITCCVHNG 529



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 29/301 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVE-----HGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           G+ V      S+L  C  LK+       HG    R +   +L+      + ++ +Y   G
Sbjct: 445 GMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ------NAIVNVYGEVG 498

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
             D A + F+ +  R+     W S+I+     G   +A+ L++ +++  ++PD       
Sbjct: 499 HRDYARRAFESI--RSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISA 556

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L A A L  ++ G+++H   +R GF  +G + ++LVDMYA CG +  +R +F  +  +DL
Sbjct: 557 LSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDL 616

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV--- 314
           I + SM+     HG   EA  +F+ M      PD +   ++L   +++ L+  G +    
Sbjct: 617 ILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEI 676

Query: 315 --HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII---HAH 368
             +G+ L    E   C+ + L    S+   L++A      MP K     W +++   H H
Sbjct: 677 MKYGYQLEPWPEHYACMVDLL----SRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIH 732

Query: 369 S 369
           S
Sbjct: 733 S 733


>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Brachypodium distachyon]
          Length = 594

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 234/448 (52%), Gaps = 12/448 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G  +   T  S+L  C Q K +  G  +H+L+    L     + + L+ +Y     ++ 
Sbjct: 133 DGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAAVKNALIDMYGKCRNLEG 192

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVLK 202
           A +VFD           W  +I  Y      E+A AL  +M        P+  T   +L 
Sbjct: 193 ARKVFDD-HKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNGVTMAYLLS 251

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC+ L   R  + +H   +R G   D  V  AL+D YAKC ++       +  G++   +
Sbjct: 252 ACSRLS-GRHAKCMHAMCIRLGLESDIIVETALMDAYAKCHNMKMMELTLEN-GSRRTET 309

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           +N+ ++GY H+    +A ++ + MI     PD   ++SIL   A ++ +R    +H ++L
Sbjct: 310 WNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQATNIHCYLL 369

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
             G      I   LI VY+K G LD +  LFD +P+KDVV+W ++I     H +   +++
Sbjct: 370 TLGFLRSTEITTGLINVYAKAGDLDVSWSLFDGLPEKDVVAWTTVIAGYGMHGQAQTSIL 429

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            + +M + GV P+ +TF SLL AC+H+G V  G +LF  M   +G+ P  +HY+ +V++ 
Sbjct: 430 LYNRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNADHYSSLVDMV 489

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAG I+EAY +I E M  E S  VWGALL AC LH NV  GE AA+ LFELEP N  N 
Sbjct: 490 GRAGRIEEAYRLI-EDMPLEPSTSVWGALLGACVLHKNVKFGEVAAKHLFELEPKNTGNH 548

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            LL  IY  A R  DV+ V R + ++GL
Sbjct: 549 VLLGNIYAAADRWSDVQDVRRRMAEKGL 576



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/250 (37%), Positives = 130/250 (52%), Gaps = 13/250 (5%)

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           NSL+  Y  LG Y +A+ALY  M       D  TFP   KAC GL L R G  VH  A+ 
Sbjct: 11  NSLLRSYTGLGHYREAVALYSGMRS----FDHLTFPFAAKACGGLRLSRHGRAVHCRALA 66

Query: 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282
            GFG D +V NAL+ MY  CGD+  A  VF  + N+ ++S+N+++ G + +     A ++
Sbjct: 67  AGFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVKNDCAERALEV 126

Query: 283 FRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
           F  M  +G + D   + S+L   A A  L IG  VH  V  RG+     + N+LI +Y K
Sbjct: 127 FGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAAVKNALIDMYGK 186

Query: 340 DGKLDQACWLF-DHMPQKDVVSWNSIIHA-----HSKDHEALIYFEQMERDGVLPDHLTF 393
              L+ A  +F DH   KDVVSW  +I A     H ++  AL +   M      P+ +T 
Sbjct: 187 CRNLEGARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNGVTM 246

Query: 394 VSLLSACAHL 403
             LLSAC+ L
Sbjct: 247 AYLLSACSRL 256



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 214/481 (44%), Gaps = 60/481 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF    + C  L+   HG  +H          +  + + L+ +Y   G +  A  VF  M
Sbjct: 40  TFPFAAKACGGLRLSRHGRAVHCRALAAGFGDDTYVQNALISMYMGCGDVAAAEAVFCAM 99

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            NRT  +  WN++I+G  +    E A+ ++ +M  +G E D+ T   VL ACA    + +
Sbjct: 100 QNRTVVS--WNAVIAGCVKNDCAERALEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSI 157

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF-DRIGNKDLISYNSMLTGYI 271
           G  VH      G      V NAL+DMY KC ++  AR VF D   +KD++S+  M+  Y+
Sbjct: 158 GRAVHQLVEERGLADYAAVKNALIDMYGKCRNLEGARKVFDDHKYDKDVVSWTVMIGAYV 217

Query: 272 HHGLLVEAFDIFRGMILNGFDPDP--VAISSILANASLL--RIGAQVHGWVLRRGVEWDL 327
            +  + EAF +   M++    P P  V ++ +L+  S L  R    +H   +R G+E D+
Sbjct: 218 LNDHVEEAFALGHEMLMTSGAPWPNGVTMAYLLSACSRLSGRHAKCMHAMCIRLGLESDI 277

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERD 384
            +  +L+  Y+K   +       ++  ++   +WN+ I  ++   ++ +A+   ++M  +
Sbjct: 278 IVETALMDAYAKCHNMKMMELTLENGSRR-TETWNATISGYTHNEQEKKAIELLKRMIAE 336

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
              PD  T  S+L A A    V+    +   ++   G     E    ++N+Y +AG +D 
Sbjct: 337 SARPDSATMASILPAYAESADVRQATNIHCYLL-TLGFLRSTEITTGLINVYAKAGDLDV 395

Query: 445 AYSMI---------------------------------VEKMEFEASPVVWGALLYACYL 471
           ++S+                                  + ++  + + V + +LLYAC  
Sbjct: 396 SWSLFDGLPEKDVVAWTTVIAGYGMHGQAQTSILLYNRMVQLGVKPNTVTFASLLYACSH 455

Query: 472 HGNVCMGETAAQKLFE-------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            G V  G     +LFE       + P+ +H +  L+ + G AGR   +E   R++ D  L
Sbjct: 456 VGMVDEG----LQLFEDMRGIHGVMPNADH-YSSLVDMVGRAGR---IEEAYRLIEDMPL 507

Query: 525 E 525
           E
Sbjct: 508 E 508



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           I+ L+  +       + T AS+L    +   V     +H  + T    ++  I++ L+ +
Sbjct: 327 IELLKRMIAESARPDSATMASILPAYAESADVRQATNIHCYLLTLGFLRSTEITTGLINV 386

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G +D +  +FD +  +   A  W ++I+GY   G+ + +I LY +M + GV+P+  
Sbjct: 387 YAKAGDLDVSWSLFDGLPEKDVVA--WTTVIAGYGMHGQAQTSILLYNRMVQLGVKPNTV 444

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA-----LVDMYAKCGDIVKA 248
           TF  +L AC+ +G++  G ++  D      G  G + NA     LVDM  + G I +A
Sbjct: 445 TFASLLYACSHVGMVDEGLQLFEDM----RGIHGVMPNADHYSSLVDMVGRAGRIEEA 498


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 227/401 (56%), Gaps = 11/401 (2%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-V 190
           L+ +Y+  G    A +VFD +  R   +  WN+++  Y   G   D   ++  M +EG V
Sbjct: 157 LVTMYSNLGDPLAARRVFDGIPRRDVVS--WNAMMKAYERAGMAADVARMFRDMIDEGAV 214

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
            P++ T   VL AC   G + +G  +              V +ALV MY KCG++ +AR 
Sbjct: 215 APNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARR 274

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASL 307
           VFD I +KD++++N+M+TGY  +G+  EA  +F  M   G  PD + +  +L   A    
Sbjct: 275 VFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGA 334

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L +G ++  +   RG+  ++ +  +L+ +YSK G LD+A  +F  +P K+  +WN++I  
Sbjct: 335 LELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICG 394

Query: 368 ---HSKDHEALIYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
              + + HEA+  FE M   +G+ PD +TF+ +LSAC H G +K G R F+ +  ++ I 
Sbjct: 395 LAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQII 454

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P++EHY+CMV+L  RAG ++EA+   VEK+  +A  V+ GALL AC    NV + E    
Sbjct: 455 PKIEHYSCMVDLLARAGHLEEAWD-FVEKIPGKADAVMLGALLAACRKCKNVEVSERVIN 513

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           ++ +LEP N  N+ +  KIY ++ RLDD  ++  ++ +RG+
Sbjct: 514 RIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGV 554



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 166/322 (51%), Gaps = 11/322 (3%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           AF +N  +  +A       A+ L+ +M    + PD +T P +L A A           H 
Sbjct: 82  AFSYNVTLRFFAST-RPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSAHA 140

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
              R G       +++LV MY+  GD + AR VFD I  +D++S+N+M+  Y   G+  +
Sbjct: 141 LLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAAD 200

Query: 279 AFDIFRGMILNG-FDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334
              +FR MI  G   P+ V ++ +LA   +A  L +G  +  WV    +E    + ++L+
Sbjct: 201 VARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALV 260

Query: 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHL 391
            +Y K G++ +A  +FD +  KDVV+WN++I  ++++    EA+  F  M ++G  PD +
Sbjct: 261 GMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKI 320

Query: 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
           T V +LSACA +G++++G  L +    + G+   V     +V++Y + G +D+A   +  
Sbjct: 321 TLVGVLSACAAVGALELGTELDAYASHR-GLYGNVYVGTALVDMYSKCGDLDKAVQ-VFG 378

Query: 452 KMEFEASPVVWGALLYACYLHG 473
           K+  + +   W AL+     +G
Sbjct: 379 KLPCK-NEATWNALICGLAFNG 399



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 41/409 (10%)

Query: 45  TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTE-TFASLLETCYQ 103
            F   P+          KA+ +  + A   + +     +  G     E T A +L  C  
Sbjct: 173 VFDGIPRRDVVSWNAMMKAYERAGMAA--DVARMFRDMIDEGAVAPNEVTVAVVLAACRD 230

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
              +  G  L   + +  +     + S L+ +Y   G + EA +VFD ++++   A  WN
Sbjct: 231 AGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVA--WN 288

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           ++I+GYA+ G  ++AIAL+  M +EG  PD+ T   VL ACA +G + +G ++   A   
Sbjct: 289 AMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYASHR 348

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA---F 280
           G   + +V  ALVDMY+KCGD+ KA  VF ++  K+  ++N+++ G   +G   EA   F
Sbjct: 349 GLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQF 408

Query: 281 DIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340
           ++ R     G  PD +    +L+        A VH  +L+ G  W     NSL   +   
Sbjct: 409 EVMRNE--EGLRPDDITFIGVLS--------ACVHAGLLKDGRRW----FNSLTSEFQII 454

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
            K++    + D + +   +             EA  + E++       D +   +LL+AC
Sbjct: 455 PKIEHYSCMVDLLARAGHLE------------EAWDFVEKIPGKA---DAVMLGALLAAC 499

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDEAYSM 448
               +V+V ER+ + +++   + P    +Y     +Y  +  +D++  M
Sbjct: 500 RKCKNVEVSERVINRIMQ---LEPSNSWNYVVSSKIYASSDRLDDSAKM 545


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 252/466 (54%), Gaps = 9/466 (1%)

Query: 65  PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
           P  +   +D+I + ++   Q+G    T     L+  C   KA+E G ++HR + +  L +
Sbjct: 15  PVLECGGVDAIREAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDR 74

Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
            + +S+ L+ +Y   G + EA +VFD M ++  F+  W  L++G+ + G   +AI L+ +
Sbjct: 75  PRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFS--WTMLMAGFVQSGRGVEAIQLFHR 132

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M +EG  PD+    + + +C     +  G ++H  A   G   D    NA+++MY KCG 
Sbjct: 133 MCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGS 192

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           I +A  VF R+  K++IS+++M+  +  + L  EA   F+ M   G + D +   S+L  
Sbjct: 193 IGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDA 252

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
             +   L +G  +H  ++  G++  + + N+L+ +Y K G  D A  +FD M +K+VVSW
Sbjct: 253 YTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSW 312

Query: 362 NSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N+++ A+ ++    EAL  F+ M+ +GV P+ +TFV++L  C+H G  K     F  M +
Sbjct: 313 NAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQ 372

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
            +GI+PR  H+ C++++ GR+G ++EA  +I + M   A  V+W +LL AC  H +    
Sbjct: 373 DFGITPREVHFGCLIDMLGRSGKLEEAEELI-QAMPVPADAVLWTSLLCACVTHKDEDRA 431

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             AA++ F+ EP     + +L  +Y    + D+  +V + +   G+
Sbjct: 432 ARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGV 477


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 245/464 (52%), Gaps = 16/464 (3%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LD  +      + +G    +  + +LL++    +A++ G ++H  +    L  N  I + 
Sbjct: 165 LDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETG 224

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           ++ +Y   G +  A +VFDQM+ +   A     L+ GY + G   DA+ L+  +  EGVE
Sbjct: 225 IVNMYVKCGWLVGAKRVFDQMAVKKPVAC--TGLMVGYTQAGRARDALKLFVDLVTEGVE 282

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
            D F F  VLKACA L  + +G+++H    + G   +  V   LVD Y KC     A   
Sbjct: 283 WDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRA 342

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM------ILNGFDPDPV-AISSILAN 304
           F  I   + +S++++++GY       EA   F+ +      ILN F    +    S+LA+
Sbjct: 343 FQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLAD 402

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
            +   IG QVH   ++R +       ++LI +YSK G LD A  +F+ M   D+V+W + 
Sbjct: 403 CN---IGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAF 459

Query: 365 IHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  H+      EAL  FE+M   G+ P+ +TF+++L+AC+H G V+ G+     M+ KY 
Sbjct: 460 ISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYN 519

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           ++P ++HY CM+++Y R+GL+DEA   + + M FE   + W   L  C+ H N+ +GE A
Sbjct: 520 VAPTIDHYDCMIDIYARSGLLDEALKFM-KNMPFEPDAMSWKCFLSGCWTHKNLELGEIA 578

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            ++L +L+P++   + L   +Y  AG+ ++   + +++ +R L+
Sbjct: 579 GEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLK 622



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 216/428 (50%), Gaps = 16/428 (3%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K + L+   + L+   + G++V + ++  L E C +L+++ HG  LH  +   +   + 
Sbjct: 59  SKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSV 118

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            + + +L++Y     +++A ++FD+MS   A +    ++IS YAE G  + A+ L+  M 
Sbjct: 119 LLQNCVLQMYCECRSLEDADKLFDEMSELNAVSR--TTMISAYAEQGILDKAVGLFSGML 176

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
             G +P    +  +LK+      +  G ++H   +R G   +  +   +V+MY KCG +V
Sbjct: 177 ASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLV 236

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANA 305
            A+ VFD++  K  ++   ++ GY   G   +A  +F  ++  G + D    S +L A A
Sbjct: 237 GAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296

Query: 306 SL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363
           SL  L +G Q+H  V + G+E ++ +   L+  Y K    + AC  F  + + + VSW++
Sbjct: 297 SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA 356

Query: 364 IIHAH---SKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           II  +   S+  EA+  F+ +  ++  + +  T+ S+  AC+ L    +G ++ +  +++
Sbjct: 357 IISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKR 416

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
             I  +    A ++ +Y + G +D+A + + E M+     V W A +     +GN     
Sbjct: 417 SLIGSQYGESA-LITMYSKCGCLDDA-NEVFESMD-NPDIVAWTAFISGHAYYGNA---- 469

Query: 480 TAAQKLFE 487
           + A +LFE
Sbjct: 470 SEALRLFE 477


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 243/430 (56%), Gaps = 14/430 (3%)

Query: 22  SKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLES 81
           SKN ++ K   +K Q+IS        +    S      N +         L+  ++ LES
Sbjct: 33  SKNLQTHKHTLRKTQEIS-----VVGAAVSHSAIDQTQNLELRELCLQGNLEQAMKRLES 87

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
            ++  I V+ + + +LL  C   +A + G +++ L+ ++       + + LL ++  FG 
Sbjct: 88  MLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGN 147

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           + +A  VF +MS R  F+  WN L+ GYA+ G +++A+ LY +M    + P+ +TFP VL
Sbjct: 148 LLDAWYVFGKMSERDVFS--WNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           K CAG+  I  G+++H   +RFGF  D  V NAL+ MY KCGDI  AR +FD++  +D I
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRI 265

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWV 318
           S+N+M++GY  +G  +E  ++F  M     DPD + ++++ +   LL   R+G  VHG+V
Sbjct: 266 SWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYV 325

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEAL 375
           ++     D+ + NSLI +YS  G+L++A  +F  M  KDVVSW ++I    +H    +A+
Sbjct: 326 VKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAV 385

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             ++ ME +G+LPD +T VS+LSACA +G + +G RL  + + K G+   V     ++++
Sbjct: 386 ETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI-KTGLVSHVIVSNSLIDM 444

Query: 436 YGRAGLIDEA 445
           Y +   +D A
Sbjct: 445 YSKCKCVDNA 454



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 240/440 (54%), Gaps = 15/440 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++   C  L     G  +H  +  +    +  +++ L+++Y++ G ++EA  VF +M
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++   +  W ++I+          A+  Y  ME EG+ PD+ T   VL ACA +G + +
Sbjct: 361 ESKDVVS--WTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL 418

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++ G      V N+L+DMY+KC  +  A  VF  I  K+++S+ S++ G   
Sbjct: 419 GIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRI 478

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDL 327
           +    EA   FR M      P+ V + S+L+  +  RIGA     ++H   LR GV +D 
Sbjct: 479 NNRSFEALLFFRQM-KESMKPNSVTLISVLSACA--RIGALMRGKEIHAHALRTGVGFDG 535

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERD 384
            + N+++ +Y + G+   A   F+   +KDV +WN ++  +++  +A +    F++M   
Sbjct: 536 FLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL 594

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + PD +TF+SLL AC+  G V  G   F++M  KY ++P ++HYAC+V++ GRAG +D+
Sbjct: 595 EIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDD 654

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           AY  I + M       +WGALL AC +H NV +GE AA+++FE +  +   + LL  +Y 
Sbjct: 655 AYDFI-QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYA 713

Query: 505 NAGRLDDVERVERMLVDRGL 524
             G  D V +V  ++ +RGL
Sbjct: 714 GCGNWDKVSKVRSLMRERGL 733



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 57/371 (15%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  S+L  C  +  ++ GI+LH +     L  +  +S+ L+ +Y+    +D A
Sbjct: 395 GILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF  +S +   +  W SLI G        +A+ L+F+  +E ++P+  T   VL ACA
Sbjct: 455 LEVFRNISGKNVVS--WTSLILGLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACA 511

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G +  G+++H  A+R G GFDGF+ NA++DMY +CG  V A   F+    KD+ ++N 
Sbjct: 512 RIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNI 570

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           +LTGY   G    A ++F  M+     PD +   S+L   S           ++  G+E+
Sbjct: 571 LLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS--------KSGMVTEGLEY 622

Query: 326 DLCIANS------------LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE 373
              + N             ++ +  + G+LD A      MP                   
Sbjct: 623 FNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP------------------- 663

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
                       + PD   + +LL+AC    +V++GE     + EK   S  V +Y  + 
Sbjct: 664 ------------IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKS--VGYYILLC 709

Query: 434 NLYGRAGLIDE 444
           NLY   G  D+
Sbjct: 710 NLYAGCGNWDK 720


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 227/402 (56%), Gaps = 11/402 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++S L  +Y+  GL+ EA +VFDQM  + A A  W ++I GYA+ G  E A+  +  M+ 
Sbjct: 78  VASNLADMYSKCGLLSEACRVFDQMPQKDAVA--WTAMIDGYAKNGSLEAAVLSFRDMKR 135

Query: 188 EG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           EG V  DQ  F  VL A  GL    + + +H    + GF  +  V NAL+DMYAK  D+ 
Sbjct: 136 EGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVE 195

Query: 247 KARTVFD-RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
            A  V     G  +++S  SM+ GYI    + EA  I+  +   G +P+    SS++   
Sbjct: 196 SASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGC 255

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A  +LL  GAQ+H  V++  +  D  + ++L+ +Y K G +  +  LF+ +  +  ++WN
Sbjct: 256 AMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWN 315

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I+    H    EA+  F++M   G+ P+H+ FVSLL+AC+H G V  G + F  M E 
Sbjct: 316 AVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEA 375

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +GI P+ EHY+C+++ YGRAG +DEAY  I E M  + +   W +LL AC + G+  +GE
Sbjct: 376 HGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE-MPIKPNAYGWCSLLGACRMRGSKELGE 434

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
            AAQ L +LEP N      L  IY + G+ +DV+ V +++ D
Sbjct: 435 VAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRD 476



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 187/399 (46%), Gaps = 50/399 (12%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           A  W +L+SG ++   + DA+A +  M   GV P +F      +A A LG    G ++H 
Sbjct: 6   AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHC 65

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             VR GF  + FV + L DMY+KCG + +A  VFD++  KD +++ +M+ GY  +G L  
Sbjct: 66  VGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA 125

Query: 279 AFDIFRGMILNGF-DPDPVAISSILANASLLRIG---AQVHGWVLRRGVEWDLCIANSLI 334
           A   FR M   G    D     S+L+ +  L+ G     +H  V + G E ++ + N+LI
Sbjct: 126 AVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 185

Query: 335 VVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDH 390
            +Y+K   ++ A  +    P   +VVS  S+I  + +     EAL+ + ++ R GV P+ 
Sbjct: 186 DMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNE 245

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
            TF S++  CA    ++ G +L + +++   I       + +V++YG+ GLI  +  +  
Sbjct: 246 FTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLFN 304

Query: 451 EKMEFEASPVVWGA-----------------------------------LLYACYLHGNV 475
           E +E+  + + W A                                   LL AC   G V
Sbjct: 305 E-IEYR-TDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLV 362

Query: 476 CMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDD 511
             G      + E   +EP  EH +  +I  YG AGRLD+
Sbjct: 363 DEGLKYFYSMKEAHGIEPKEEH-YSCIIDTYGRAGRLDE 400



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + G+     TF+S+++ C     +E G +LH ++I T+L+R +  + S L+ +Y   GLI
Sbjct: 238 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR-DSFVGSTLVDMYGKCGLI 296

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             + Q+F+++  RT  A  WN++I+ +A+ G   +AI  + +M   G+ P+   F  +L 
Sbjct: 297 SLSMQLFNEIEYRTDIA--WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 354

Query: 203 ACAGLGLIRVGEK 215
           AC+  GL+  G K
Sbjct: 355 ACSHAGLVDEGLK 367


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 227/402 (56%), Gaps = 11/402 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++S L  +Y+  GL+ EA +VFDQM  + A A  W ++I GYA+ G  E A+  +  M+ 
Sbjct: 159 VASNLADMYSKCGLLSEACRVFDQMPQKDAVA--WTAMIDGYAKNGSLEAAVLSFRDMKR 216

Query: 188 EG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           EG V  DQ  F  VL A  GL    + + +H    + GF  +  V NAL+DMYAK  D+ 
Sbjct: 217 EGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVE 276

Query: 247 KARTVFD-RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL--- 302
            A  V     G  +++S  SM+ GYI    + EA  I+  +   G +P+    SS++   
Sbjct: 277 SASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGC 336

Query: 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           A  +LL  GAQ+H  V++  +  D  + ++L+ +Y K G +  +  LF+ +  +  ++WN
Sbjct: 337 AMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWN 396

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I+    H    EA+  F++M   G+ P+H+ FVSLL+AC+H G V  G + F  M E 
Sbjct: 397 AVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEA 456

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +GI P+ EHY+C+++ YGRAG +DEAY  I E M  + +   W +LL AC + G+  +GE
Sbjct: 457 HGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE-MPIKPNAYGWCSLLGACRMRGSKELGE 515

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
            AAQ L +LEP N      L  IY + G+ +DV+ V +++ D
Sbjct: 516 VAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRD 557



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 53/469 (11%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           T   ASLL++C +   +  G  LH RL+ +     +  +++ L+ +Y+    +  A ++F
Sbjct: 20  TVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLF 79

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
             M  R A +  W +L+SG ++   + DA+A +  M   GV P +F      +A A LG 
Sbjct: 80  AAMPRRNAVS--WTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 137

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
              G ++H   VR GF  + FV + L DMY+KCG + +A  VFD++  KD +++ +M+ G
Sbjct: 138 PLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDG 197

Query: 270 YIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIG---AQVHGWVLRRGVEW 325
           Y  +G L  A   FR M   G    D     S+L+ +  L+ G     +H  V + G E 
Sbjct: 198 YAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFEL 257

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQM 381
           ++ + N+LI +Y+K   ++ A  +    P   +VVS  S+I  + +     EAL+ + ++
Sbjct: 258 EVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVEL 317

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
            R GV P+  TF S++  CA    ++ G +L + +++   I       + +V++YG+ GL
Sbjct: 318 RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGL 376

Query: 442 IDEAYSMIVEKMEFEASPVVWGA-----------------------------------LL 466
           I  +  +  E +E+  + + W A                                   LL
Sbjct: 377 ISLSMQLFNE-IEYR-TDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 434

Query: 467 YACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGNAGRLDDV 512
            AC   G V  G      + E   +EP  EH +  +I  YG AGRLD+ 
Sbjct: 435 TACSHAGLVDEGLKYFYSMKEAHGIEPKEEH-YSCIIDTYGRAGRLDEA 482



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + G+     TF+S+++ C     +E G +LH ++I T+L+R +  + S L+ +Y   GLI
Sbjct: 319 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR-DSFVGSTLVDMYGKCGLI 377

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             + Q+F+++  RT  A  WN++I+ +A+ G   +AI  + +M   G+ P+   F  +L 
Sbjct: 378 SLSMQLFNEIEYRTDIA--WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 435

Query: 203 ACAGLGLIRVGEK 215
           AC+  GL+  G K
Sbjct: 436 ACSHAGLVDEGLK 448


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 249/479 (51%), Gaps = 29/479 (6%)

Query: 69  LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE--HGIKLHRLIPTNLLRKNK 126
           L  L   IQ   S   +          SL ETC  +  ++  H   L    P        
Sbjct: 7   LHPLSPHIQPANSPSASTAGNHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDE--PATL 64

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA-ELGEYEDAIALYFQM 185
            +  K+L+L ++F  ++ A +VFD + N ++F   WN+LI   A ++   E+A  LY +M
Sbjct: 65  FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFM--WNTLIRACAHDVSRKEEAFMLYRKM 122

Query: 186 EEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
            E G   PD+ TFP VLKACA +  +  G++VH   V+ GF  D +V N L+  Y  CG 
Sbjct: 123 LERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGC 182

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           +  AR VFD +  + L+S+NSM+   +  G    A  +FR M    F+PD   + S+L  
Sbjct: 183 LDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDM-QKSFEPDGYTMQSVLSA 241

Query: 303 -ANASLLRIGAQVHGWVLRR---GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
            A    L +G   H ++LR     V  D+ I NSLI +Y K G L  A  +F  M + D+
Sbjct: 242 CAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDL 301

Query: 359 VSWNSII---HAHSKDHEALIYFEQMERDG--VLPDHLTFVSLLSACAHLGSVKVGERLF 413
            SWN++I     H K  EA+  F+ M ++G  V P+ +TFV+LL AC H G V  G + F
Sbjct: 302 ASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYF 361

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            +MV +YGI P +EHY C+++L  RAG I EA  M++  M  +   V+W +LL AC   G
Sbjct: 362 DMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMS-MPMKPDAVIWRSLLDACCKKG 420

Query: 474 -NVCMGETAAQKLFELEPDNEHN-------FELLIKIYGNAGRLDDVERVERMLVDRGL 524
            +V + E  A+ +     DN+ +       + LL ++Y +A R +DV  V +++ D G+
Sbjct: 421 ASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGI 479


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 149/465 (32%), Positives = 246/465 (52%), Gaps = 10/465 (2%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           +K +    ++Q  +  ++ G  V +      ++ C+ L   +     H L     L  + 
Sbjct: 89  SKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDP 148

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            ++  L+ +Y   G ++EAH+VF+++  + +    W  +I G+    E      L+ +M 
Sbjct: 149 YVAPALMNVYTELGSLEEAHKVFEEVPLKNSVI--WGVMIKGHLNFSEEFGVFELFSRMR 206

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDI 245
             G E D F    +++AC  +   + G+  H   ++  F    F L  +LVDMY KCG +
Sbjct: 207 RSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFL 266

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI-LAN 304
             A  +F+ I  +D++ +++++ G+  +G  +E+  +FR M+ +   P+ V  +SI LA 
Sbjct: 267 DFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLAC 326

Query: 305 ASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +SL  L+ G  VHG+++R GVE D+    S I +Y+K G +  A  +F  +P+K+V SW+
Sbjct: 327 SSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWS 386

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I+    H    EAL  F +M     LP+ +TFVS+LSAC+H G ++ G   F  M   
Sbjct: 387 TMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRD 446

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           YGI+P  EHYACMV+L GRAG IDEA S I   M  E     WGALL AC +H    + E
Sbjct: 447 YGITPVEEHYACMVDLLGRAGKIDEALSFI-NNMPTEPGASAWGALLGACRIHRRAELAE 505

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             A+KL  LE D    + +L  IY + G  + V++    + ++G+
Sbjct: 506 EVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGI 550



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 220/464 (47%), Gaps = 50/464 (10%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T+T  SL      L A  H  +L+  I  N L ++      +   Y   G +  A + F+
Sbjct: 15  TKTLLSLFRFTKTL-ASNH--QLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFN 71

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            ++     +  WN++++ +++   + D + L+ +M +EG   D F     +KAC GL L 
Sbjct: 72  HITFENLHS--WNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF 129

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           +  +  H  A++     D +V  AL+++Y + G + +A  VF+ +  K+ + +  M+ G+
Sbjct: 130 QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGH 189

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG-VEWD 326
           ++       F++F  M  +GF+ DP  +  ++    N    + G   HG  +++  ++ +
Sbjct: 190 LNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSN 249

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEAL---IYFEQMER 383
             +  SL+ +Y K G LD A  LF+ +  +DVV W++II   +++  AL     F QM  
Sbjct: 250 FFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLA 309

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
           D V P+ +TF S++ AC+ LGS+K G  +   M+ + G+   V++Y   +++Y + G I 
Sbjct: 310 DSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMI-RNGVELDVKNYTSFIDMYAKCGCIV 368

Query: 444 EAYSM---IVEKMEFEASPVVWG------------------------------ALLYACY 470
            AY +   I EK  F  S ++ G                              ++L AC 
Sbjct: 369 TAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACS 428

Query: 471 LHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
             G +  G +  + +   + + P  EH +  ++ + G AG++D+
Sbjct: 429 HSGRIEEGWSHFKSMSRDYGITPVEEH-YACMVDLLGRAGKIDE 471


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 243/430 (56%), Gaps = 14/430 (3%)

Query: 22  SKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLES 81
           SKN ++ K   +K Q+IS        +    S      N +         L+  ++ LES
Sbjct: 33  SKNLQTHKHTLRKTQEIS-----VVGAAVSHSAIDQTQNLELRELCLQGNLEQAMKRLES 87

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
            ++  I V+ + + +LL  C   +A + G +++ L+ ++       + + LL ++  FG 
Sbjct: 88  MLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGN 147

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           + +A  VF +MS R  F+  WN L+ GYA+ G +++A+ LY +M    + P+ +TFP VL
Sbjct: 148 LLDAWYVFGKMSERDVFS--WNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
           K CAG+  I  G+++H   +RFGF  D  V NAL+ MY KCGDI  AR +FD++  +D I
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRI 265

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWV 318
           S+N+M++GY  +G  +E  ++F  M     DPD + ++++ +   LL   R+G  VHG+V
Sbjct: 266 SWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYV 325

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEAL 375
           ++     D+ + NSLI +YS  G+L++A  +F  M  KDVVSW ++I    +H    +A+
Sbjct: 326 VKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAV 385

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             ++ ME +G+LPD +T VS+LSACA +G + +G RL  + + K G+   V     ++++
Sbjct: 386 ETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI-KTGLVSHVIVSNSLIDM 444

Query: 436 YGRAGLIDEA 445
           Y +   +D A
Sbjct: 445 YSKCKCVDNA 454



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 240/440 (54%), Gaps = 15/440 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++   C  L     G  +H  +  +    +  +++ L+++Y++ G ++EA  VF +M
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++   +  W ++I+          A+  Y  ME EG+ PD+ T   VL ACA +G + +
Sbjct: 361 ESKDVVS--WTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL 418

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H  A++ G      V N+L+DMY+KC  +  A  VF  I  K+++S+ S++ G   
Sbjct: 419 GIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRI 478

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-----QVHGWVLRRGVEWDL 327
           +    EA   FR M      P+ V + S+L+  +  RIGA     ++H   LR GV +D 
Sbjct: 479 NNRSFEALLFFRQM-KESMKPNSVTLISVLSACA--RIGALMRGKEIHAHALRTGVGFDG 535

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERD 384
            + N+++ +Y + G+   A   F+   +KDV +WN ++  +++  +A +    F++M   
Sbjct: 536 FLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL 594

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            + PD +TF+SLL AC+  G V  G   F++M  KY ++P ++HYAC+V++ GRAG +D+
Sbjct: 595 EIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDD 654

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           AY  I + M       +WGALL AC +H NV +GE AA+++FE +  +   + LL  +Y 
Sbjct: 655 AYDFI-QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYA 713

Query: 505 NAGRLDDVERVERMLVDRGL 524
             G  D V +V  ++ +RGL
Sbjct: 714 GCGNWDKVSKVRSLMRERGL 733



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 57/371 (15%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     T  S+L  C  +  ++ GI+LH +     L  +  +S+ L+ +Y+    +D A
Sbjct: 395 GILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VF  +S +   +  W SLI G        +A+ L+F+  +E ++P+  T   VL ACA
Sbjct: 455 LEVFRNISGKNVVS--WTSLILGLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACA 511

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G +  G+++H  A+R G GFDGF+ NA++DMY +CG  V A   F+    KD+ ++N 
Sbjct: 512 RIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNI 570

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325
           +LTGY   G    A ++F  M+     PD +   S+L   S           ++  G+E+
Sbjct: 571 LLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS--------KSGMVTEGLEY 622

Query: 326 DLCIANS------------LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE 373
              + N             ++ +  + G+LD A      MP                   
Sbjct: 623 FNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP------------------- 663

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
                       + PD   + +LL+AC    +V++GE     + EK   S  V +Y  + 
Sbjct: 664 ------------IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKS--VGYYILLC 709

Query: 434 NLYGRAGLIDE 444
           NLY   G  D+
Sbjct: 710 NLYAGCGNWDK 720


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 248/452 (54%), Gaps = 13/452 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + +GI     + AS+L  C  +K +E G + H L     L  N    S L+ +Y+  G I
Sbjct: 411 ILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDI 470

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +AH+ +  M  R+  +   N+LI+GYA L   +++I L  +M+  G++P + TF  ++ 
Sbjct: 471 KDAHKTYSSMPERSVVSV--NALIAGYA-LKNTKESINLLHEMQILGLKPSEITFASLID 527

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRIGN-KDL 260
            C G   + +G ++H   V+ G      F+  +L+ MY     +  A  +F    + K +
Sbjct: 528 VCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSI 587

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGW 317
           + + ++++G+I +     A +++R M  N   PD     ++L   +LL     G ++H  
Sbjct: 588 VMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSL 647

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKD---HE 373
           +   G + D   +++L+ +Y+K G +  +  +F+ +  +KDV+SWNS+I   +K+     
Sbjct: 648 IFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKC 707

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  F++M +  + PD +TF+ +L+AC+H G V  G ++F VMV  YGI PRV+HYACMV
Sbjct: 708 ALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMV 767

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GR G + EA   I +K+E E + ++W  LL AC +HG+   G+ AA+KL ELEP + 
Sbjct: 768 DLLGRWGFLKEAEEFI-DKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSS 826

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             + LL  +Y  +G  D+   + R ++ + ++
Sbjct: 827 SPYVLLSNMYAASGNWDEARSLRRTMIKKDIQ 858



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 212/402 (52%), Gaps = 15/402 (3%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           +L  Y + G +D+A Q+F QM         WN +ISG+A+   YE+A+A + QM + GV+
Sbjct: 155 VLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVK 214

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
             + T   VL A A L  +  G  VH  A++ GF    +V ++L++MY KC     AR V
Sbjct: 215 SSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQV 274

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---L 308
           FD I  K++I +N+ML  Y  +G L    ++F  MI  G  PD    +SIL+  +    L
Sbjct: 275 FDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYL 334

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
            +G Q+H  ++++    +L + N+LI +Y+K G L +A   F+HM  +D +SWN+II  +
Sbjct: 335 EVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGY 394

Query: 369 SKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
            ++     A   F +M  DG++PD ++  S+LSAC ++  ++ G++ F  +  K G+   
Sbjct: 395 VQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ-FHCLSVKLGLETN 453

Query: 426 VEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +   + ++++Y + G I +A   YS + E+     + ++ G  L       N+       
Sbjct: 454 LFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKESINL----LHE 509

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            ++  L+P +E  F  LI +   + ++    ++   +V RGL
Sbjct: 510 MQILGLKP-SEITFASLIDVCKGSAKVILGLQIHCAIVKRGL 550



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 204/406 (50%), Gaps = 19/406 (4%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           L ++++     +  GI     T+ S+L TC   + +E G +LH  I       N  +++ 
Sbjct: 299 LSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNA 358

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
           L+ +YA  G + EA + F+ M+ R   +  WN++I GY +      A +L+ +M  +G+ 
Sbjct: 359 LIDMYAKAGALKEAGKHFEHMTYRDHIS--WNAIIVGYVQEEVEAGAFSLFRRMILDGIV 416

Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
           PD+ +   +L AC  + ++  G++ H  +V+ G   + F  ++L+DMY+KCGDI  A   
Sbjct: 417 PDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKT 476

Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
           +  +  + ++S N+++ GY       E+ ++   M + G  P  +  +S++     ++ +
Sbjct: 477 YSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLKPSEITFASLIDVCKGSAKV 535

Query: 309 RIGAQVHGWVLRRGVEWDLC----IANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNS 363
            +G Q+H  +++RG+   LC    +  SL+ +Y    +L  A  LF      K +V W +
Sbjct: 536 ILGLQIHCAIVKRGL---LCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTA 592

Query: 364 IIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420
           +I  H ++     AL  + +M  + + PD  TFV++L ACA L S+  G  + S++    
Sbjct: 593 LISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHT- 651

Query: 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           G        + +V++Y + G +  +   + E++  +   + W +++
Sbjct: 652 GFDLDELTSSALVDMYAKCGDVKSSVQ-VFEELATKKDVISWNSMI 696



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 142/315 (45%), Gaps = 50/315 (15%)

Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221
           WN  + G       E  +  Y      G  PDQFTF   L ACA L  + +G  VH   +
Sbjct: 16  WNWRVQGTKHYSS-ERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVI 74

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL--ISYNSMLTGYIHHGLLVEA 279
           + G     F   AL+ +YAKC  +  ART+F       L  +S+ ++++GY+  GL  EA
Sbjct: 75  KSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEA 134

Query: 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339
             IF  M  N   PD VA+ ++L NA                               Y  
Sbjct: 135 LHIFDKM-RNSAVPDQVALVTVL-NA-------------------------------YIS 161

Query: 340 DGKLDQACWLFDHM--PQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
            GKLD AC LF  M  P ++VV+WN +I  H+K     EAL +F QM + GV     T  
Sbjct: 162 LGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLA 221

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVE 451
           S+LSA A L ++  G  L      K G    +   + ++N+YG+  + D+A   +  I +
Sbjct: 222 SVLSAIASLAALNHG-LLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQ 280

Query: 452 KMEFEASPVVWGALL 466
           K     + +VW A+L
Sbjct: 281 K-----NMIVWNAML 290



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 205/473 (43%), Gaps = 58/473 (12%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           TK  + + ++Q   S + +G +    TFA  L  C +L+ +  G  +H  +  + L    
Sbjct: 23  TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTS 82

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
                L+ LYA    +  A  +F            W +LISGY + G   +A+ ++ +M 
Sbjct: 83  FCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMR 142

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
              V PDQ     VL A                                   Y   G + 
Sbjct: 143 NSAV-PDQVALVTVLNA-----------------------------------YISLGKLD 166

Query: 247 KARTVFDR--IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
            A  +F +  I  ++++++N M++G+       EA   F  M  +G       ++S+L  
Sbjct: 167 DACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSA 226

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            A+ + L  G  VH   +++G E  + +A+SLI +Y K    D A  +FD + QK+++ W
Sbjct: 227 IASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVW 286

Query: 362 NSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           N+++  +S++      +  F  M   G+ PD  T+ S+LS CA    ++VG +L S +++
Sbjct: 287 NAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIK 346

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           K   S    + A ++++Y +AG + EA     E M +    + W A++   Y+   V   
Sbjct: 347 KRFTSNLFVNNA-LIDMYAKAGALKEAGKHF-EHMTYR-DHISWNAIIVG-YVQEEV--- 399

Query: 479 ETAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           E  A  LF       + PD E +   ++   GN   L+  ++   + V  GLE
Sbjct: 400 EAGAFSLFRRMILDGIVPD-EVSLASILSACGNIKVLEAGQQFHCLSVKLGLE 451


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 222/391 (56%), Gaps = 13/391 (3%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           +D   ++F+ M  +   +  WN++I+G A  G Y + + +  +M    ++PD FT   VL
Sbjct: 250 VDSVRKIFEMMPEKDLVS--WNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVL 307

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
              A    I  G+++H  ++R G   + +V ++L+DMYAKC  +V +  VF  +  +D I
Sbjct: 308 PLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGI 367

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+NS++ G + +GL  E    FR M++    P   + SSI+   A+ + L +G Q+HG++
Sbjct: 368 SWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 427

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHE 373
            R G + ++ IA+SL+ +Y+K G +  A  +FD M  +D+VSW ++I     H H+ D  
Sbjct: 428 TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALD-- 485

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+  FEQM+ +G+ P+++ F+++L+AC+H G V    + F+ M   +GI+P VEHYA + 
Sbjct: 486 AIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVS 545

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GRAG ++EAY  I   M    +  VW  LL AC +H NV M E  A ++ E++P N 
Sbjct: 546 DLLGRAGRLEEAYDFIC-GMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNT 604

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
             + LL  IY  A R  +  +    L   G+
Sbjct: 605 GAYILLANIYSAARRWKEAAKWRASLRRTGI 635



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 169/360 (46%), Gaps = 45/360 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +S+L    +   +  G ++H       L     ++S L+ +YA    + ++++VF  +
Sbjct: 302 TLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLL 361

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + R   +  WNS+I+G  + G +++ +  + QM    ++P  ++F  ++ ACA L  + +
Sbjct: 362 TERDGIS--WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H    R GF  + F+ ++LVDMYAKCG+I  AR +FDR+  +D++S+ +M+ G   
Sbjct: 420 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCAL 479

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA-- 330
           HG  ++A ++F  M   G +P+ VA  ++L   S    G     W     +  D  IA  
Sbjct: 480 HGHALDAIELFEQMKTEGIEPNYVAFMAVLTACS--HAGLVDEAWKYFNSMTLDFGIAPG 537

Query: 331 ----NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386
                ++  +  + G+L++A      MP                               +
Sbjct: 538 VEHYAAVSDLLGRAGRLEEAYDFICGMP-------------------------------I 566

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEA 445
            P    + +LLSAC    +V + E++ + ++E   + P+    Y  + N+Y  A    EA
Sbjct: 567 GPTGSVWATLLSACRVHKNVDMAEKVANRILE---VDPKNTGAYILLANIYSAARRWKEA 623



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 154/342 (45%), Gaps = 15/342 (4%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y+   L+ ++ ++F+ +    A A  W S+I  Y   G    ++  +  M   G+ PD 
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALA--WKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDH 108

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
             FP VLKACA L  + +GE +H   +R G  FD +  NAL++MY+K   + K+     R
Sbjct: 109 NVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGR--QR 166

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           +G   ++   +  T  +    ++      +   +  F+ D V+  S    A +L I  + 
Sbjct: 167 LGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYD-VSCRSREFEAQVLEIDYKP 225

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD--- 371
                    E + C     I   S    +D    +F+ MP+KD+VSWN+II  ++++   
Sbjct: 226 RS----EYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLY 281

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            E L    +M    + PD  T  S+L   A    +  G+ +    + + G+   V   + 
Sbjct: 282 GETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ-GLDAEVYVASS 340

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++++Y +   + ++Y +    +  E   + W +++  C  +G
Sbjct: 341 LIDMYAKCTRVVDSYRVFT--LLTERDGISWNSIIAGCVQNG 380



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           I  ++ +F+S++  C  L  +  G +LH  I  N   +N  I+S L+ +YA  G I  A 
Sbjct: 397 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAR 456

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
           Q+FD+M  R   +  W ++I G A  G   DAI L+ QM+ EG+EP+   F  VL AC+ 
Sbjct: 457 QIFDRMRLRDMVS--WTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSH 514

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKA 248
            GL+    K + +++   FG    V +  A+ D+  + G + +A
Sbjct: 515 AGLVDEAWK-YFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA 557


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 239/437 (54%), Gaps = 12/437 (2%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           ++LL       ++ +  ++H  +  +LL ++  I  +L+  Y   G  ++A ++FD M +
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           +   +  WNSLISG++    +    A Y    E  V+P++ T   ++ AC G   +  G+
Sbjct: 103 KDLVS--WNSLISGFSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACNGA--LDAGK 157

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
            +H   ++ G   +  V N+L++MY K GD+  A  +F+ I + + +S+NS++   + +G
Sbjct: 158 YIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNG 217

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA---QVHGWVLRRGVEWDLCIAN 331
              E  D F  M   G + D   I ++L     L +G     +HG +   G    + IA 
Sbjct: 218 CAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIAT 277

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGVLP 388
           +L+  Y+K G+L  +  +F  +   D V+W +++    AH    EA+  FE M   G+ P
Sbjct: 278 ALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEP 337

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           DH+TF  LLSAC+H G V  G+  F+VM E YGI PRV+HY+CMV+L GR GL+++AY  
Sbjct: 338 DHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYE- 396

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508
           +++ M  E +  VWGALL AC +HGN+ +G+  A+ L  +EP +  N+ +L  +Y  +  
Sbjct: 397 VIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRS 456

Query: 509 LDDVERVERMLVDRGLE 525
             D  +V  +L +RGL+
Sbjct: 457 WKDAAKVRALLKERGLK 473


>gi|115474729|ref|NP_001060961.1| Os08g0138600 [Oryza sativa Japonica Group]
 gi|38636769|dbj|BAD03012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622930|dbj|BAF22875.1| Os08g0138600 [Oryza sativa Japonica Group]
          Length = 690

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/402 (33%), Positives = 229/402 (56%), Gaps = 10/402 (2%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE- 188
           +++LR+    G++ EA QVFD M  R+     W +++ G  + G    A+AL+ ++ EE 
Sbjct: 154 NRVLRMQLACGMLAEARQVFDGMPARSEAT--WGTMMGGLIDAGRPRGALALFRELWEEV 211

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           G +         ++A   LG  R G+++H    + G   D ++  AL+DMY KCG + +A
Sbjct: 212 GGDAAPRVVVVAVRAVTALGSARAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGKLDEA 271

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANA 305
           R VFD +  K ++++NSML  Y  HG   EA D++  M   G D D    S++L   +  
Sbjct: 272 RRVFDGVPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRL 331

Query: 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
            LL    Q H  +++ G+  D+    +L+ +Y K G ++ A  +F+ MP ++++SWN++I
Sbjct: 332 GLLEHAKQAHAGLIQTGLPLDIVGNTALVDLYCKWGLMEDARNVFERMPIRNLISWNALI 391

Query: 366 HA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
                H    +A+  FE++  +G+ P+H+TF+++L+AC   G V+ G+R+F +M +    
Sbjct: 392 AGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEGKRIFQLMTQNQRT 451

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
            PR  HYAC++ L+G+ G +DEAYSMI  K  F  +  +WGALL A  +H N+ +   +A
Sbjct: 452 KPRAMHYACIIELFGQQGRLDEAYSMI-RKAPFIPTANMWGALLTASRIHRNLQLARLSA 510

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           ++L  +EP   +N+  L+ +Y N+GR  +V +V   L  RGL
Sbjct: 511 EQLLAMEPQKINNYVELLNLYINSGRQTEVSKVVNTLKRRGL 552



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           L +   G +LH  +    + +++ +S  L+ +Y   G +DEA +VFD +  ++  A  WN
Sbjct: 230 LGSARAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGKLDEARRVFDGVPQKSVVA--WN 287

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           S+++ Y+  G  E+A+ LY  M E GV+ DQFTF  +L+  + LGL+   ++ H   ++ 
Sbjct: 288 SMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQT 347

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G   D     ALVD+Y K G +  AR VF+R+  ++LIS+N+++ GY +HG+  +A ++F
Sbjct: 348 GLPLDIVGNTALVDLYCKWGLMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMF 407

Query: 284 RGMILNGFDPDPVAISSIL 302
             +I  G  P+ V   ++L
Sbjct: 408 EELIAEGIAPNHVTFLAVL 426



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 81  SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYATF 139
           S  + G+ +   TF+++L    +L  +EH  + H  LI T L     G ++ L+ LY  +
Sbjct: 308 SMCEGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQTGLPLDIVG-NTALVDLYCKW 366

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           GL+++A  VF++M  R   +  WN+LI+GY   G  + AI ++ ++  EG+ P+  TF  
Sbjct: 367 GLMEDARNVFERMPIRNLIS--WNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLA 424

Query: 200 VLKACAGLGLIRVGEKV 216
           VL AC   G +  G+++
Sbjct: 425 VLNACRFSGFVEEGKRI 441


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/438 (31%), Positives = 231/438 (52%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+   L +      +E G ++H     + L  N  +++ +  +Y   G ++ A  VF++M
Sbjct: 113 TYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKM 172

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S + A A  W  ++ GY +     DA+AL+ +M  EGVE D++ F  VLKACAGL  +  
Sbjct: 173 SEKNAVA--WTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNF 230

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H   V+ G   +  V   LVD Y KC ++  A   F+ I   + +S+++++TGY  
Sbjct: 231 GRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQ 290

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCI 329
            G   EA   F  +     D +    +SI    S L     GAQ H   ++  +      
Sbjct: 291 MGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHG 350

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGV 386
            +++I +YS+ G+LD A  +F+ +   D V+W +II  ++      EAL  F +M+  GV
Sbjct: 351 ESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGV 410

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+++L+AC+H G V  G +    M   YG++  ++HY CMV++Y RAG + EA 
Sbjct: 411 RPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEAL 470

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            +I   M F    + W  LL  C+ + N+ +GE AA+ LF+L+P++   + L+  +Y + 
Sbjct: 471 ELI-RSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASF 529

Query: 507 GRLDDVERVERMLVDRGL 524
           G+  +   V +M+ +R L
Sbjct: 530 GKWKEAANVRKMMAERNL 547



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 202/412 (49%), Gaps = 15/412 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI+V   ++  L E C ++K++  G   H  +   +    + + + +L++Y   G + +A
Sbjct: 5   GISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADA 64

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD+M  R   +  WN++IS YAE G ++    ++  M E   +P+  T+   L++  
Sbjct: 65  RKVFDEMRERNLVS--WNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLL 122

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               + +G+++H  A+R G G +  V  A+ +MY KCG +  A  VF+++  K+ +++  
Sbjct: 123 NPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTG 182

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
           ++ GY      ++A  +F  M+  G + D    S +L A A L  L  G Q+HG +++ G
Sbjct: 183 IMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLG 242

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           +E ++ +   L+  Y K   L+ A   F+ + + + VSW+++I  + +     EAL  FE
Sbjct: 243 LESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFE 302

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            +    V  +  T+ S+  AC+ L     G +  +  + K  +       + M+ +Y R 
Sbjct: 303 SLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAI-KSSLVAYQHGESAMITMYSRC 361

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           G +D A + + E ++ +   V W A++      GN       A KLF    D
Sbjct: 362 GRLDYA-TRVFESID-DPDAVAWTAIIAGYAYQGNA----PEALKLFRRMQD 407


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 258/486 (53%), Gaps = 18/486 (3%)

Query: 54  PTPLLTNQKAFPKTKLQALDSI--IQDLESSVQNGITVQTETFASLLETCYQLK---AVE 108
           P+P + +  AF     Q    +  +    + ++ G+     TF S  +         A  
Sbjct: 76  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAA 135

Query: 109 HGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167
            G ++H L +    L  +  +S   L +Y   G +  A ++FD+M NR   A  WN++++
Sbjct: 136 VGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVA--WNAVMT 193

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
                G   + +  YF +   G  P+  +      ACAG+  + +GE+ H    + GF  
Sbjct: 194 NAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDK 253

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D  V N++VD Y KC  + KAR VFD +G ++ +S+ SM+  Y  +G   EAF ++ G  
Sbjct: 254 DVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGAR 313

Query: 288 LNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
             G +P    +SS+L   +    L +G  +H    R  ++ ++ +A++L+ +Y K G + 
Sbjct: 314 RAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQ 373

Query: 345 QACWLFDHMPQKDVVSWNSII--HAHSKDH-EALIYFEQ--MERDGVLPDHLTFVSLLSA 399
            A  +F  MPQ+++V+WN++I  +AH  D   AL  F++  M R+   P+++T V++L+A
Sbjct: 374 DAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRE-TAPNYITIVNVLTA 432

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+  G  K G  LF  M +++GI PR+EHYAC+V+L GRAG+ ++AY  I++ M    S 
Sbjct: 433 CSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYE-IIQGMPMRPSI 491

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            VWGALL  C +HG   +G  AA+KLFEL+P +  N  LL  +  +AGR  +   V + +
Sbjct: 492 SVWGALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEM 551

Query: 520 VDRGLE 525
            + G++
Sbjct: 552 KNVGIK 557


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 246/468 (52%), Gaps = 42/468 (8%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++N     + +F   L+ C Q      G+ +H +I       +  + + L++ Y   G +
Sbjct: 144 IRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCL 203

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A Q+FD+ S +      W ++I+GYA     ++AIAL+  M    V+P++ T   +L 
Sbjct: 204 GFARQMFDESSVKDVVT--WTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLS 261

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG------------------- 243
           AC+  G   +G+ +H    R        +LNA++DMY KCG                   
Sbjct: 262 ACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFS 321

Query: 244 ------------DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNG 290
                       D+  AR +FD +  ++++S+N+M+ GY  +   +EA ++F  M+ + G
Sbjct: 322 WTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVG 381

Query: 291 FDPDPVAISSILANAS---LLRIGAQVH-GWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
             P    +  +L+ +     L +G ++H   V + G++  L + N+++ +Y+K G +D A
Sbjct: 382 LVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAA 441

Query: 347 CWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
             LF  MP+K++VSWNS+I A++      +AL  F+QM   G+ PDH+TF+ +LSAC++ 
Sbjct: 442 AKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYG 501

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           G V  G+  F  M   +G+ P+ EHYACMV+L  R GL+ EAY +I  +M  EAS   WG
Sbjct: 502 GFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELI-SRMPMEASEGGWG 560

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511
           ALL AC  HGNV M + A +KL EL+P++   + LL  I  +  +  D
Sbjct: 561 ALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKD 608



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 195/424 (45%), Gaps = 59/424 (13%)

Query: 97  LLETC---YQLKAVEHGIK----LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           +L++C   +QLK ++  I     ++++ P + L     +S          G I  AH +F
Sbjct: 58  ILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDS--------GDIHYAHLIF 109

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           DQ        F WN++I GY +        + + QM     E D  +F   LKAC     
Sbjct: 110 DQ--TELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAE 167

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
             VG  VH    + GF  D FV N L+  Y + G +  AR +FD    KD++++ +M+ G
Sbjct: 168 KIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMING 227

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWD 326
           Y  +  L EA  +F  M+ +   P+ V + ++L+  S      +G  +H  + R+ +   
Sbjct: 228 YARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCS 287

Query: 327 LCIAN-------------------------------SLIVVYSKDGKLDQACWLFDHMPQ 355
           L + N                               SL+  Y+K+G L  A  LFD MP+
Sbjct: 288 LNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPE 347

Query: 356 KDVVSWNSIIHAHSKDH---EALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
           +++VSWN++I  +S++    EAL  F  M +  G++P   T V +LSA   LG +++G+ 
Sbjct: 348 RNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQE 407

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL--YAC 469
           +    V K GI   +     ++++Y + G ID A + +   M  E + V W +++  YA 
Sbjct: 408 IHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAA-AKLFHSMP-EKNLVSWNSMISAYAS 465

Query: 470 YLHG 473
           Y H 
Sbjct: 466 YGHA 469



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 121/268 (45%), Gaps = 35/268 (13%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LD  I    S + + +     T  +LL  C Q    E G  LH  I    +  +  + + 
Sbjct: 234 LDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNA 293

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE--- 188
           +L +Y   G +  A ++F+ M  R  F+  W SL++GYA+ G+   A  L+ +M E    
Sbjct: 294 MLDMYVKCGCLTTAREIFNNMERRDVFS--WTSLLNGYAKNGDLGSARKLFDEMPERNIV 351

Query: 189 -----------------------------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
                                        G+ P + T   VL A   LG + +G+++H +
Sbjct: 352 SWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCN 411

Query: 220 AV-RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
            V + G      + NA++DMYAKCG I  A  +F  +  K+L+S+NSM++ Y  +G   +
Sbjct: 412 HVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKK 471

Query: 279 AFDIFRGMILNGFDPDPVAISSILANAS 306
           A  +F  MI +G  PD +    +L+  S
Sbjct: 472 ALTLFDQMIGSGLKPDHITFIGVLSACS 499


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 229/399 (57%), Gaps = 14/399 (3%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194
           +Y   G + +A  VFD+M +R   +  W  LI+GYA+     +AI L   M      P+ 
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVS--WTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNG 58

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
           FTF  +LKA    G   +GE++H  AV++ +  D +V +AL+DMYA+C  +  A  VFDR
Sbjct: 59  FTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 118

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA-- 312
           + +K+ +S+N+++ G+            F  M  NGF       SS+   ++  RIGA  
Sbjct: 119 LVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMF--SAFARIGALE 176

Query: 313 ---QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
               VH  +++ G +    + N+++ +Y+K G +  A  +FD M ++D+V+WN+++ A +
Sbjct: 177 QGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALA 236

Query: 370 K---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           +     EA+ +FE++ + G+  + +TF+S+L+AC+H G VK G+  F  M++ Y + P +
Sbjct: 237 QYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEI 295

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           +HY   V+L GRAGL+ EA  + V KM  E +  VWGALL AC +H N  MG+ AA  +F
Sbjct: 296 DHYVSFVDLLGRAGLLKEAL-IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVF 354

Query: 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           EL+PD+     LL  IY + G+ +D  RV +M+   G++
Sbjct: 355 ELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVK 393



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL+          G ++H L       ++  + S LL +YA    +D A  VFD++
Sbjct: 60  TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            ++   +  WN+LI+G+A   + E  +  + +M+  G     FT+  +  A A +G +  
Sbjct: 120 VSKNEVS--WNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQ 177

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  VH   ++ G     FV N ++ MYAK G +V AR VFDR+  +DL+++N+MLT    
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 237

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           +GL  EA   F  +   G   + +   S+L   S        HG +++ G  +       
Sbjct: 238 YGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS--------HGGLVKEGKHY-----FD 284

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392
           ++  Y+   ++D      D + +  ++             EALI+  +M  +   P    
Sbjct: 285 MMKDYNVQPEIDHYVSFVDLLGRAGLLK------------EALIFVFKMPME---PTAAV 329

Query: 393 FVSLLSACAHLGSVKVGE 410
           + +LL AC    + K+G+
Sbjct: 330 WGALLGACRMHKNAKMGQ 347



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG      T++S+     ++ A+E G  +H  +  +  +    + + +L +YA  G + 
Sbjct: 152 RNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMV 211

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VFD+M  R      WN++++  A+ G  ++A+A + ++ + G++ +Q TF  VL A
Sbjct: 212 DARKVFDRMDKRDLVT--WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 204 CAGLGLIRVGE 214
           C+  GL++ G+
Sbjct: 270 CSHGGLVKEGK 280


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 249/439 (56%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L +C  + + + G  +H  +    ++ N  + S LL +Y+  G  D+A+ +F+ +
Sbjct: 359 TATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTI 418

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   A  W S+ISG+ +  +Y +A+  Y  M   G +PD      V+ AC GL  + +
Sbjct: 419 KGRDVVA--WGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNL 476

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H  A++ G   D FV ++LVDMY+K      +  VF  +  K+L+++NS+++ Y  
Sbjct: 477 GCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCR 536

Query: 273 HGLLVEAFDIFRGMILNGFDPD---PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +GL   +  +F  M   G  PD     ++   +++ ++LR G  VHG+++R+ +  DL +
Sbjct: 537 NGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQL 596

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGV 386
            N+LI +Y K G L  A  +F +M Q ++V+WN +I    +H    +A+  F++M   G+
Sbjct: 597 ENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGI 656

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD +TF+SLL++C H G ++ G +LF +M  ++GI PR+EHY  +V+L GRAG +D+AY
Sbjct: 657 APDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAY 716

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
           +  V+ +  E    +W +LL +C +H NV +G+ AA KL ++EP    N+  L+ +YG  
Sbjct: 717 A-FVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGEN 775

Query: 507 GRLDDVERVERMLVDRGLE 525
              D    +   + ++GL+
Sbjct: 776 ELQDRAANLRASMKEKGLK 794



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 169/317 (53%), Gaps = 8/317 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S L+ +Y + G   +A ++F ++ ++      WN +I G+ E G +E+++ +Y   + 
Sbjct: 191 LESGLIYMYFSCGRPLDAWRLFKELEDKGNVV-AWNVMIGGFGENGLWENSLEVYLLAKN 249

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           E V+    +F   L AC     +  G +VH D V+ GF  D +V  +L+ MY+KC  +  
Sbjct: 250 ENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVED 309

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A  VFD++  K    +N+M++ Y+ +G   +   I++ M +    PD +  +++L++  L
Sbjct: 310 AENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCL 369

Query: 308 L---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           +     G  +H  +++R ++ ++ + ++L+ +YSK G  D A  +F+ +  +DVV+W S+
Sbjct: 370 VGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSM 429

Query: 365 IHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I    ++    EAL ++  M   G  PD     S++SAC  L +V +G  +  + + K G
Sbjct: 430 ISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAI-KSG 488

Query: 422 ISPRVEHYACMVNLYGR 438
           +   V   + +V++Y +
Sbjct: 489 LEQDVFVASSLVDMYSK 505



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 198/405 (48%), Gaps = 22/405 (5%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLR 134
           +  L+   +N +     T+ SLL+ C  L  +++G  +H  I T      +  I++ L+ 
Sbjct: 34  VDALQFYSRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLIN 93

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFP---WNSLISGYAELGEYEDAIALYFQMEEEGVE 191
            Y   G    A +VFD++            WNS+++GY   G  ++ IA + +M+  GV 
Sbjct: 94  FYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVR 153

Query: 192 PDQFTFPRVLKACAG-LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
           PD ++   +L A  G LG  +   ++H  +VR  F  D F+ + L+ MY  CG  + A  
Sbjct: 154 PDAYSLCILLGASDGHLGYAK---QIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWR 210

Query: 251 VFDRIGNK-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS-----SILAN 304
           +F  + +K +++++N M+ G+  +GL   + +++  ++    +   V+ S     S    
Sbjct: 211 LFKELEDKGNVVAWNVMIGGFGENGLWENSLEVY--LLAKNENVKLVSASFTSTLSACCQ 268

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              +  G QVH  +++ G E D  +  SL+ +YSK   ++ A  +FD +  K    WN++
Sbjct: 269 GEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAM 328

Query: 365 IHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I A+    + ++ L  ++QM+   + PD LT  ++LS+C  +GS   G RL    + K  
Sbjct: 329 ISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFG-RLIHAELVKRP 387

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           I   V   + ++ +Y + G  D+A S+       +   V WG+++
Sbjct: 388 IQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDV--VAWGSMI 430


>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
          Length = 564

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 226/402 (56%), Gaps = 11/402 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           ++S L  +Y+  GL+ EA +VFDQM  + A    W ++I GYA+ G  E AI ++  M+ 
Sbjct: 156 VASNLADMYSKCGLLHEACRVFDQMPQKDAVT--WTTMIDGYAKNGSLEAAILIFRDMKC 213

Query: 188 EG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
           EG V  DQ  F   L A  GL     G  +H   ++ GF  +  V NAL+DMYAK GD+ 
Sbjct: 214 EGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLE 273

Query: 247 KA-RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305
            A R V    G  +++S  S++ GY+  G + EA + +  +   G +P+    +S++   
Sbjct: 274 NASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGC 333

Query: 306 S---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
           +   LL  GAQ+H  VL+  +  D  + ++L+ +Y   G +  +  LF+ +  +  ++WN
Sbjct: 334 AMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRTEIAWN 393

Query: 363 SIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419
           ++I+    H     A+  F++M   G+ P+H+TFV LL+AC+H G V  G   F  M + 
Sbjct: 394 AVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEGLGYFHSMKDA 453

Query: 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +GI P+ EHY+C++++YGRAG +DEA   I E M  + S   W +LL AC + GN  +GE
Sbjct: 454 HGIEPKAEHYSCIIDMYGRAGRLDEAEKFISE-MPVKPSAYAWCSLLGACRMQGNKELGE 512

Query: 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
            AAQ L +L+P+N      L  IY + G+ +DV+ V++ + D
Sbjct: 513 VAAQNLMKLDPNNTGIHISLSGIYTSLGQWEDVKAVKKSMKD 554



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 215/461 (46%), Gaps = 49/461 (10%)

Query: 99  ETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           ++C +   +  G  LH RL+ T     +  +++ L+ +Y+       A +VF  +     
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNL 84

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
            +  W +L+SG  +   + DA+A +  M    + P QF      +A A L   R G ++H
Sbjct: 85  VS--WTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLH 142

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
              +R GF  + FV + L DMY+KCG + +A  VFD++  KD +++ +M+ GY  +G L 
Sbjct: 143 CIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLE 202

Query: 278 EAFDIFRGMILNGF-DPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSL 333
            A  IFR M   G    D     S L+ +  L+    G  +H  +++ G E +  + N+L
Sbjct: 203 AAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNAL 262

Query: 334 IVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPD 389
           + +Y+K G L+ A  +    P   +VVS  S+I  +    +  EAL  + ++ R GV P+
Sbjct: 263 LDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPN 322

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID---EAY 446
             TF S++  CA    ++ G +L + +++   IS      + +V +YG  GLI    + +
Sbjct: 323 EFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVG-STLVYMYGNCGLISLSLQLF 381

Query: 447 SMIVEKMEFEASPVV---------WGA---------------------LLYACYLHGNVC 476
           + I  + E   + V+         WGA                     LL AC   G V 
Sbjct: 382 NEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVD 441

Query: 477 MGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            G     + +    +EP  EH +  +I +YG AGRLD+ E+
Sbjct: 442 EGLGYFHSMKDAHGIEPKAEH-YSCIIDMYGRAGRLDEAEK 481



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLI 142
           + G+     TFAS+++ C     +E G +LH +++ TNL+  +  + S L+ +Y   GLI
Sbjct: 316 RQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLI-SDSFVGSTLVYMYGNCGLI 374

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             + Q+F+++  RT  A  WN++I+ YA+ G    AI  + +M   G+ P+  TF  +L 
Sbjct: 375 SLSLQLFNEIGYRTEIA--WNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLT 432

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKA 248
           AC+  GL+  G   +  +++   G +      + ++DMY + G + +A
Sbjct: 433 ACSHAGLVDEGLG-YFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEA 479


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 244/449 (54%), Gaps = 17/449 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI      F++L+ +      ++ G ++H  +       +  I + +  +Y   G +D A
Sbjct: 175 GIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGA 234

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
               ++M+ ++A A     L+ GY +     DA+ L+ +M  EGVE D F F  +LKACA
Sbjct: 235 EVATNKMTRKSAVAC--TGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACA 292

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            LG +  G+++H   ++ G   +  V   LVD Y KC     AR  F+ I   +  S+++
Sbjct: 293 ALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSA 352

Query: 266 MLTGYIHHGLLVEAFDIFR-----GMILNGFDPDPV--AISSILANASLLRIGAQVHGWV 318
           ++ GY   G    A ++F+     G++LN F  + +  A S++    S L  GAQ+H   
Sbjct: 353 LIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAV----SDLICGAQIHADA 408

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEAL 375
           +++G+   L   +++I +YSK GK+D A   F  + + D V+W +II AH+   K  EAL
Sbjct: 409 IKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEAL 468

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
             F++M+  GV P+ +TF+ LL+AC+H G VK G++    M +KYG++P ++HY CM+++
Sbjct: 469 RLFKEMQGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDI 528

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
           Y RAGL+ EA   ++  M FE   + W +LL  C+   N+ +G  AA  +F L+P +   
Sbjct: 529 YSRAGLLLEALE-VIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSAT 587

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGL 524
           + ++  +Y  AG+ D+  +  +M+ +R L
Sbjct: 588 YVIMFNLYALAGKWDEAAQFRKMMAERNL 616



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 209/428 (48%), Gaps = 23/428 (5%)

Query: 68  KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG 127
           KL+ +   I++++ +   GI++   ++  L + C  L A+  G   H  +   +   NK 
Sbjct: 60  KLRQVHEFIRNMDIA---GISINPRSYEYLFKMCGTLGALSDGKLFHNRLQ-RMANSNKF 115

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           I + +L++Y        A + FD++ +R   +  W ++IS Y E G  ++A+ L+ +M +
Sbjct: 116 IDNCILQMYCDCKSFTAAERFFDKIVDRDLSS--WATIISAYTEEGRIDEAVGLFLRMLD 173

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
            G+ P+   F  ++ + A   ++ +G+++H   +R  F  D  +   + +MY KCG +  
Sbjct: 174 LGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDG 233

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANAS 306
           A    +++  K  ++   ++ GY       +A  +F  MI  G + D    S IL A A+
Sbjct: 234 AEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAA 293

Query: 307 L--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L  L  G Q+H + ++ G+E ++ +   L+  Y K  + + A   F+ + + +  SW+++
Sbjct: 294 LGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSAL 353

Query: 365 IHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  +    K   AL  F+ +   GVL +   + ++  AC+ +  +  G ++ +  ++K G
Sbjct: 354 IAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKK-G 412

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYS--MIVEKMEFEASPVVWGALLYACYLHGNVCMGE 479
           +   +   + M+ +Y + G +D A+   + ++K +     V W A++ A   HG      
Sbjct: 413 LVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPD----TVAWTAIICAHAYHGKA---- 464

Query: 480 TAAQKLFE 487
           + A +LF+
Sbjct: 465 SEALRLFK 472


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 236/409 (57%), Gaps = 21/409 (5%)

Query: 130 SKLLRLYA--TFGLIDEAHQVFDQMSNRTAFAFPWNSLISG--YAELGEYEDAIALYFQM 185
           SK+L   A   FG  D A ++F Q+ N   FA+  NS+I G  Y ++   E  I L+  M
Sbjct: 26  SKILSFAALSPFGNFDYARKIFSQIPNPGIFAY--NSVIRGCLYTKIPSKE-PIHLFKDM 82

Query: 186 EEEGV-EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
             +G   P+ FT   VLKAC+ +  +  G+++H   +R GF    +V ++LV+ Y+KC +
Sbjct: 83  VGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEE 142

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           I  AR VFD I  ++L+ +++M++GY   G++ EA  +FR M + G +PD V++  +L+ 
Sbjct: 143 ITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSA 202

Query: 305 ASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            ++   L IG  VH ++ +R +  DL +  +LI +Y+K G +++A  +FD M  KD  +W
Sbjct: 203 CAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAW 262

Query: 362 NSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           +S+I     H    +AL  F +ME     P+H+TF+ +LSACAH G V  G+R +S M+E
Sbjct: 263 SSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLE 322

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAY--SMIVEKMEFEASPVVWGALLYACYLHGNVC 476
             GI P +EHY CMV+L  R GLIDEAY  ++I+        PV+W  LL A   +  + 
Sbjct: 323 -LGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT----PDPVIWRTLLVAYTKNRMLQ 377

Query: 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             E  A KL ELEP    N+ +L  +Y +  +L+ V  V +M+ + G++
Sbjct: 378 KAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIK 426



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 5/285 (1%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
            T T A +L+ C  + A+E G ++H  I  +    +  + S L+  Y+    I  A +VF
Sbjct: 91  NTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVF 150

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209
           D+++ R      W++++SGYA LG   +A+ ++ +M+  G+EPD+ +   VL ACA +G 
Sbjct: 151 DEITERNLVC--WSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGA 208

Query: 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269
           + +G+ VH    +     D  +  AL++MYAKCG I KAR +FD +  KD  +++SM+ G
Sbjct: 209 LDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVG 268

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
              HGL  +A ++F  M      P+ V    IL   A+  L+  G +    +L  G+E  
Sbjct: 269 LAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPS 328

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
           +     ++ +  + G +D+A      +P  D V W +++ A++K+
Sbjct: 329 MEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKN 373



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 4/219 (1%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           GI     +   +L  C  + A++ G  +H  I   ++  +  +++ L+ +YA  G I++A
Sbjct: 188 GIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKA 247

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++FD+M  + + A  W+S+I G A  G  EDA+ ++ +MEE   +P+  TF  +L ACA
Sbjct: 248 REIFDEMRVKDSKA--WSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACA 305

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
             GL+  G++     +  G          +VD+  + G I +A      I   D + + +
Sbjct: 306 HGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRT 365

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +L  Y  + +L +A ++  G +L   +P       ILAN
Sbjct: 366 LLVAYTKNRMLQKA-EMVAGKLLE-LEPWKAENYIILAN 402


>gi|242057085|ref|XP_002457688.1| hypothetical protein SORBIDRAFT_03g011690 [Sorghum bicolor]
 gi|241929663|gb|EES02808.1| hypothetical protein SORBIDRAFT_03g011690 [Sorghum bicolor]
          Length = 564

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 147/406 (36%), Positives = 231/406 (56%), Gaps = 19/406 (4%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + ++  YA  G ++ + +VFD+M +R A +  WN+L+ GYA      + ++++  +  
Sbjct: 150 VYTGMVDAYAKVGDMESSRKVFDEMPSRGAAS--WNALLVGYARNKMCLETMSVFRALAA 207

Query: 188 EG--VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGD 244
           +G  V  DQ +   VL AC   G +  G +VH  A + G       V NAL+DMY +CG 
Sbjct: 208 QGREVSLDQVSVSSVLSACTVAGALDFGRQVHACAAKVGLELSAVCVSNALLDMYTRCGC 267

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
             ++  + + +G +D++++N ++ G IH    +EA  +FR M+  G  PD VA +++L  
Sbjct: 268 SRESLALLNAVGCRDVVTWNIIIRGCIHDNRFMEACVLFRSMVRTGTLPDDVAFATVLQA 327

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF----DHMPQKD 357
            A  S   IGA +H  V++ G      +A+SLI +YSK G LD A   F    DH+    
Sbjct: 328 SACMSAWAIGASMHASVVKTGFLDSDGVASSLITMYSKCGCLDDAHQAFVGAKDHL---H 384

Query: 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           V+SW ++I A   H    +A+  FE M  +G+ PDH+TFVS+LS+C+H G V+ G + F 
Sbjct: 385 VLSWTAMITALQQHGHGMQAIDVFENMLENGIPPDHITFVSVLSSCSHSGLVEQGRKYFD 444

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            M + + I+P  EHYACMV+++GRAGL+ EA   I  +M  +    V GALL AC    +
Sbjct: 445 SMTQVHRITPWNEHYACMVDMFGRAGLLTEAKRFI-NQMRPKPDASVLGALLSACINCRD 503

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           + M +  A KLF +EP N  N+ LL  IY + GRL++ + V R ++
Sbjct: 504 LEMAKEVANKLFVIEPGNTGNYVLLANIYASHGRLEEAKEVRRWMM 549



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 197/399 (49%), Gaps = 26/399 (6%)

Query: 91  TETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQ 147
           T  F++L     +L+   H  +LH R++ +   R +    + ++L+ LYA  G + +A +
Sbjct: 13  TALFSALRRA--RLQHPAHAAQLHARVLVSAGTRPHPHPVLLAQLVSLYAAAGRLADALR 70

Query: 148 VFDQ---MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
            F      +N   +A   ++L   +  L     A +L F      + P       VL AC
Sbjct: 71  AFRAHLPSANPRTYAVLVSALARPHPGL-----AFSL-FSGSRRQLRPSPHVISAVLAAC 124

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           AGL  +  G +VH  A +     D FV   +VD YAK GD+  +R VFD + ++   S+N
Sbjct: 125 AGLQPL-CGRQVHACAAKVVPPGDVFVYTGMVDAYAKVGDMESSRKVFDEMPSRGAASWN 183

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDP--DPVAISSILAN---ASLLRIGAQVHGWVL 319
           ++L GY  + + +E   +FR +   G +   D V++SS+L+    A  L  G QVH    
Sbjct: 184 ALLVGYARNKMCLETMSVFRALAAQGREVSLDQVSVSSVLSACTVAGALDFGRQVHACAA 243

Query: 320 RRGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EAL 375
           + G+E   +C++N+L+ +Y++ G   ++  L + +  +DVV+WN II     D+   EA 
Sbjct: 244 KVGLELSAVCVSNALLDMYTRCGCSRESLALLNAVGCRDVVTWNIIIRGCIHDNRFMEAC 303

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
           + F  M R G LPD + F ++L A A + +  +G  + + +V K G        + ++ +
Sbjct: 304 VLFRSMVRTGTLPDDVAFATVLQASACMSAWAIGASMHASVV-KTGFLDSDGVASSLITM 362

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           Y + G +D+A+   V   +     + W A++ A   HG+
Sbjct: 363 YSKCGCLDDAHQAFVGAKD-HLHVLSWTAMITALQQHGH 400



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 41/249 (16%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
             S V+ G       FA++L+    + A   G  +H  +       + G++S L+ +Y+ 
Sbjct: 306 FRSMVRTGTLPDDVAFATVLQASACMSAWAIGASMHASVVKTGFLDSDGVASSLITMYSK 365

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +D+AHQ F    +       W ++I+   + G    AI ++  M E G+ PD  TF 
Sbjct: 366 CGCLDDAHQAFVGAKDHL-HVLSWTAMITALQQHGHGMQAIDVFENMLENGIPPDHITFV 424

Query: 199 RVLKACAGLGLIRVGEK-------VH----------------------LDAVRFGFGF-- 227
            VL +C+  GL+  G K       VH                       +A RF      
Sbjct: 425 SVLSSCSHSGLVEQGRKYFDSMTQVHRITPWNEHYACMVDMFGRAGLLTEAKRFINQMRP 484

Query: 228 --DGFVLNALVDMYAKCGDIVKARTVFDRI-----GNKDLISYNSMLTGYIHHGLLVEAF 280
             D  VL AL+     C D+  A+ V +++     GN    +Y  +   Y  HG L EA 
Sbjct: 485 KPDASVLGALLSACINCRDLEMAKEVANKLFVIEPGNTG--NYVLLANIYASHGRLEEAK 542

Query: 281 DIFRGMILN 289
           ++ R M+  
Sbjct: 543 EVRRWMMFQ 551


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 249/491 (50%), Gaps = 62/491 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  ++L  C  LKAV    ++H     N    +  + + L+  YA  GL++ A +VF+ M
Sbjct: 122 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 181

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--------------------- 191
             +   +  WN++++GY++ G ++ A  L+  M +E +                      
Sbjct: 182 EFKDVVS--WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 192 --------------PDQFTFPRVLKACAGLGLIRVGEKVH----------LDAVRFGFGF 227
                         P+  T   VL ACA LG    G ++H          LD    G   
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
           D  V NAL+DMY+KC     AR++FD I    ++++++  M+ G+  +G   +A  +F  
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 286 MILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC---IANSLIVVY 337
           MI    G  P+   IS IL   A+ + +RIG Q+H +VLR   ++D     +AN LI +Y
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH-QYDSSAYFVANCLINMY 418

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           SK G +D A  +FD M QK  +SW S++     H +  EAL  F++M + G +PD +TF+
Sbjct: 419 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 478

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
            +L AC+H G V  G   F  M   YG++PR EHYA  ++L  R G +D+A+   V+ M 
Sbjct: 479 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK-TVKDMP 537

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            E + VVW ALL AC +H NV + E A  KL E+  +N+ ++ L+  IY  AGR  DV R
Sbjct: 538 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 597

Query: 515 VERMLVDRGLE 525
           +  ++   G++
Sbjct: 598 IRHLMKKSGIK 608



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 217/454 (47%), Gaps = 65/454 (14%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           ++ G  +   T   +L+ C +L +   G   H LI  N    N  I + L+ +Y+  G +
Sbjct: 2   LRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 61

Query: 143 DEAHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQM------EEEGVEPDQF 195
           +EA  +FD+++ R       WNS++S + +      A+ L+ +M      +      D  
Sbjct: 62  EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 121

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           +   +L AC  L  +   ++VH +A+R G   D FV NAL+D YAKCG +  A  VF+ +
Sbjct: 122 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 181

Query: 256 GNKDLISYNSM-----------------------------------LTGYIHHGLLVEAF 280
             KD++S+N+M                                   + GY   G   EA 
Sbjct: 182 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 241

Query: 281 DIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRR----------GVEWDL 327
           ++FR MI +G  P+ V I S+L A ASL     G ++H + L+           G + DL
Sbjct: 242 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 301

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSK---DHEALIYFEQM- 381
            + N+LI +YSK      A  +FD +P  +++VV+W  +I  H++    ++AL  F +M 
Sbjct: 302 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 361

Query: 382 -ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRA 439
            E  GV P+  T   +L ACAHL ++++G+++ + ++  +         A C++N+Y + 
Sbjct: 362 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKC 421

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           G +D A   + + M  + S + W +++    +HG
Sbjct: 422 GDVDTA-RHVFDSMS-QKSAISWTSMMTGYGMHG 453



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 128/275 (46%), Gaps = 50/275 (18%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M   G   D FT P VLKAC  L   R G   H      GF  + F+ NALV MY++CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 245 IVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL------NGFDPDP 295
           + +A  +FD I   G  D+IS+NS+++ ++       A D+F  M L           D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 296 VAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           ++I +IL     L+   Q   VHG  +R G   D+ + N+LI  Y+K G ++ A  +F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 353 MPQKDVVSWNSIIHAHSK--------------------------------------DHEA 374
           M  KDVVSWN+++  +S+                                       HEA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           L  F QM   G LP+ +T +S+LSACA LG+   G
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 275



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK---DVVSWNSII 365
           R G+  HG +   G E ++ I N+L+ +YS+ G L++A  +FD + Q+   DV+SWNSI+
Sbjct: 27  RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 86

Query: 366 HAHSKDHEALIYFEQMERDGVL---------PDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            AH K   A    +   +  ++          D ++ V++L AC  L +V   + +    
Sbjct: 87  SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 146

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           + + G    V     +++ Y + GL++ A   +   MEF+   V W A++      GN  
Sbjct: 147 I-RNGTFLDVFVGNALIDAYAKCGLMENAVK-VFNMMEFK-DVVSWNAMVAGYSQSGNF- 202

Query: 477 MGETAAQKLFE 487
               AA +LF+
Sbjct: 203 ---KAAFELFK 210


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 249/491 (50%), Gaps = 62/491 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           +  ++L  C  LKAV    ++H     N    +  + + L+  YA  GL++ A +VF+ M
Sbjct: 229 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 288

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--------------------- 191
             +   +  WN++++GY++ G ++ A  L+  M +E +                      
Sbjct: 289 EFKDVVS--WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 346

Query: 192 --------------PDQFTFPRVLKACAGLGLIRVGEKVH----------LDAVRFGFGF 227
                         P+  T   VL ACA LG    G ++H          LD    G   
Sbjct: 347 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 406

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIG--NKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
           D  V NAL+DMY+KC     AR++FD I    ++++++  M+ G+  +G   +A  +F  
Sbjct: 407 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 466

Query: 286 MILN--GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC---IANSLIVVY 337
           MI    G  P+   IS IL   A+ + +RIG Q+H +VLR   ++D     +AN LI +Y
Sbjct: 467 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH-QYDSSAYFVANCLINMY 525

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           SK G +D A  +FD M QK  +SW S++     H +  EAL  F++M + G +PD +TF+
Sbjct: 526 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 585

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
            +L AC+H G V  G   F  M   YG++PR EHYA  ++L  R G +D+A+   V+ M 
Sbjct: 586 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK-TVKDMP 644

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
            E + VVW ALL AC +H NV + E A  KL E+  +N+ ++ L+  IY  AGR  DV R
Sbjct: 645 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 704

Query: 515 VERMLVDRGLE 525
           +  ++   G++
Sbjct: 705 IRHLMKKSGIK 715



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 221/465 (47%), Gaps = 65/465 (13%)

Query: 72  LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK 131
           LDS I      ++ G  +   T   +L+ C +L +   G   H LI  N    N  I + 
Sbjct: 98  LDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNA 157

Query: 132 LLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQM----- 185
           L+ +Y+  G ++EA  +FD+++ R       WNS++S + +      A+ L+ +M     
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 217

Query: 186 -EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
            +      D  +   +L AC  L  +   ++VH +A+R G   D FV NAL+D YAKCG 
Sbjct: 218 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGL 277

Query: 245 IVKARTVFDRIGNKDLISYNSM-----------------------------------LTG 269
           +  A  VF+ +  KD++S+N+M                                   + G
Sbjct: 278 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 337

Query: 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVLRR----- 321
           Y   G   EA ++FR MI +G  P+ V I S+L A ASL     G ++H + L+      
Sbjct: 338 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTL 397

Query: 322 -----GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSK---D 371
                G + DL + N+LI +YSK      A  +FD +P  +++VV+W  +I  H++    
Sbjct: 398 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 457

Query: 372 HEALIYFEQM--ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
           ++AL  F +M  E  GV P+  T   +L ACAHL ++++G+++ + ++  +         
Sbjct: 458 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV 517

Query: 430 A-CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           A C++N+Y + G +D A   + + M  + S + W +++    +HG
Sbjct: 518 ANCLINMYSKCGDVDTA-RHVFDSMS-QKSAISWTSMMTGYGMHG 560



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 158/343 (46%), Gaps = 52/343 (15%)

Query: 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176
           +P+      + + + ++  Y   G  D A  V ++++   A    WN LI  + + G  +
Sbjct: 42  LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVW--WNLLIREHIKQGRLD 99

Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
            AI +  +M   G   D FT P VLKAC  L   R G   H      GF  + F+ NALV
Sbjct: 100 SAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 159

Query: 237 DMYAKCGDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL----- 288
            MY++CG + +A  +FD I   G  D+IS+NS+++ ++       A D+F  M L     
Sbjct: 160 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 219

Query: 289 -NGFDPDPVAISSILANASLLRIGAQ---VHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
                 D ++I +IL     L+   Q   VHG  +R G   D+ + N+LI  Y+K G ++
Sbjct: 220 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLME 279

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSK---------------------------------- 370
            A  +F+ M  KDVVSWN+++  +S+                                  
Sbjct: 280 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYS 339

Query: 371 ----DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
                HEAL  F QM   G LP+ +T +S+LSACA LG+   G
Sbjct: 340 QRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 382


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 241/459 (52%), Gaps = 10/459 (2%)

Query: 73  DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132
           D +++  +  +   I   + TF   ++ C     +E G  +         + +  + S +
Sbjct: 98  DEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSV 157

Query: 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
           L LY   G +DEA  +F +M+ R      W ++++G+A+ G+   A+  Y +M+ EG   
Sbjct: 158 LNLYMKCGKMDEAEVLFGKMAKRDVIC--WTTMVTGFAQAGKSLKAVEFYREMQNEGFGR 215

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D+     +L+A   LG  ++G  VH    R G   +  V  +LVDMYAK G I  A  VF
Sbjct: 216 DRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVF 275

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LR 309
            R+  K  +S+ S+++G+  +GL  +AF+    M   GF PD V +  +L   S    L+
Sbjct: 276 SRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLK 335

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-- 367
            G  VH ++L+R V  D   A +L+ +YSK G L  +  +F+H+ +KD+V WN++I    
Sbjct: 336 TGRLVHCYILKRHV-LDRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYG 394

Query: 368 -HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
            H    E +  F +M    + PDH TF SLLSA +H G V+ G+  FSVM+ KY I P  
Sbjct: 395 IHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSE 454

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           +HY C+++L  RAG ++EA  MI  +    A P +W ALL  C  H N+ +G+ AA K+ 
Sbjct: 455 KHYVCLIDLLARAGRVEEALDMINSEKLDNALP-IWVALLSGCINHRNLSVGDIAANKIL 513

Query: 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +L PD+     L+   +  A +  +V +V +++ +  +E
Sbjct: 514 QLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAME 552



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 207/404 (51%), Gaps = 25/404 (6%)

Query: 89  VQTETFASLLETCY---QLKAVEHGIKLHR--------LIPTNLLRKNKGISSKLLRLYA 137
           VQT+ F  L  T     ++K ++   KL R        +I T  L     IS  L+    
Sbjct: 2   VQTKHFCMLHRTLLCPKRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCG 61

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
             G I  A +VFD++  R    +  NS+I  Y+     ++ + LY QM  E ++PD  TF
Sbjct: 62  RIGEISYARKVFDELPQRGVSVY--NSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTF 119

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
              +KAC    ++  GE V   AV FG+  D FV ++++++Y KCG + +A  +F ++  
Sbjct: 120 TMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAK 179

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQV 314
           +D+I + +M+TG+   G  ++A + +R M   GF  D V +  +L  +  L   ++G  V
Sbjct: 180 RDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSV 239

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           HG++ R G+  ++ +  SL+ +Y+K G ++ A  +F  M  K  VSW S+I   +++  A
Sbjct: 240 HGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLA 299

Query: 375 LIYFE---QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
              FE   +M+  G  PD +T V +L AC+ +GS+K G RL    + K  +  RV   A 
Sbjct: 300 NKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTG-RLVHCYILKRHVLDRVTATAL 358

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY-LHGN 474
           M ++Y + G +  +   I E +      V W  ++ +CY +HGN
Sbjct: 359 M-DMYSKCGALSSSRE-IFEHVG-RKDLVCWNTMI-SCYGIHGN 398


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 260/484 (53%), Gaps = 29/484 (5%)

Query: 55  TPLLTN--QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIK 112
           T LLT   Q + P   L AL   I+ LE+    G      T   +L  C  L+++E G +
Sbjct: 134 TTLLTGYVQNSHP---LLALQLFIKMLEA----GAYPSNYTLGIVLNACSSLQSIEFGKQ 186

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           +H  +    +  +  I + L   Y+ F  ++ A + F  +  +   +  W S+IS   + 
Sbjct: 187 VHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVIS--WTSVISSCCDN 244

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           G+   +++ +  M  +G++P+++T   VL AC  +  + +G ++H  +++ G+G    + 
Sbjct: 245 GQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK 304

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE-----------AFD 281
           N+++ +Y KCG +++A+ +F+ +   +L+++N+M+ G+     L E           A  
Sbjct: 305 NSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALA 364

Query: 282 IFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           +F+ +  +G  PD    SS+L+   N   L  G Q+HG +++ GV  D+ +  +L+ +Y+
Sbjct: 365 MFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYN 424

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K G +D+A   F  MP + ++SW S+I     H    +AL  FE M   G+ P+ +TFV 
Sbjct: 425 KCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVG 484

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           +LSAC+H G        F +M ++Y I P ++H+AC++++Y R G ++EA+  +V KM F
Sbjct: 485 VLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFD-VVHKMNF 543

Query: 456 EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           E +  +W  L+  C  HG   +G  AA++L +L+P +   +  L+ ++ +AGR  DV +V
Sbjct: 544 EPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKV 603

Query: 516 ERML 519
            +++
Sbjct: 604 RKLM 607



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 239/494 (48%), Gaps = 38/494 (7%)

Query: 40  RNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLE 99
           R R +T +S+P +     +  QK     +L  +D+    L      G  +++  +  LL+
Sbjct: 20  RKRHST-ASFPLNDKDKSVGFQKNHSLIQLNVVDAEEPKL------GTRIESSYYFPLLQ 72

Query: 100 TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA 159
            C           +H  I      ++  + + L+ +Y+  G+++ AH+VFD +  R   A
Sbjct: 73  ECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNA 132

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
             W +L++GY +      A+ L+ +M E G  P  +T   VL AC+ L  I  G++VH  
Sbjct: 133 --WTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAY 190

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
            +++   FD  + N+L   Y+K   +  A   F  I  KD+IS+ S+++    +G    +
Sbjct: 191 LIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARS 250

Query: 280 FDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVV 336
              F  M+ +G  P+   ++S+L+   +   L +GAQ+H   ++ G    + I NS++ +
Sbjct: 251 LSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYL 310

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--------------DHEALIYFEQME 382
           Y K G L +A  LF+ M   ++V+WN++I  H+K                 AL  F+++ 
Sbjct: 311 YLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLY 370

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           R G+ PD  TF S+LS C++L +++ GE++   ++ K G+   V     +V++Y + G I
Sbjct: 371 RSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII-KSGVLADVVVGTALVSMYNKCGSI 429

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ-----KLFELEPDNEHNFE 497
           D+A    +E      + + W +++     HG   + + A Q     +L  ++P N+  F 
Sbjct: 430 DKASKAFLEMP--SRTMISWTSMITGFARHG---LSQQALQLFEDMRLVGIKP-NQVTFV 483

Query: 498 LLIKIYGNAGRLDD 511
            ++    +AG  D+
Sbjct: 484 GVLSACSHAGLADE 497


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 224/395 (56%), Gaps = 20/395 (5%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE----GVEPDQFTFPRV 200
           A ++FD+M  R  FA  W++L+SGYA  G+ E A+ALY +M+EE    G + ++FT    
Sbjct: 114 ARELFDRMPQRDHFA--WSALVSGYARHGQPEAALALYRRMQEEPGNDGAD-NEFTASSA 170

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGF---GFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
           L A A     R G ++H   VR G    G D  + +AL DMYAKCG +  AR VFDR+  
Sbjct: 171 LAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPV 230

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRIGAQ 313
           +D +S+ +M+  Y   G   E F +F  M+   G  P+    + +L   A  ++   G Q
Sbjct: 231 RDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQ 290

Query: 314 VHGWVLRRGVEWDLCIANS-LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD- 371
           VHG + + G   D C A S L+ +YSK G +  A  +F+ M + D+VSW ++I  ++++ 
Sbjct: 291 VHGRMAKSGT-GDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNG 349

Query: 372 --HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              EAL YF+   R G+ PDH+TFV +LSACAH G V  G  +F  + E+Y I    +HY
Sbjct: 350 QPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHY 409

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           AC+++L  R+G  + A  MI   M  + +  +W +LL  C +H NV +   AA+ LFE+E
Sbjct: 410 ACVIDLLSRSGQFERAEKMI-GNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIE 468

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           P+N   +  L  IY + G  D+VE V R++  +G+
Sbjct: 469 PENPATYVTLANIYASVGLFDEVEDVRRIMESKGI 503



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 146/320 (45%), Gaps = 40/320 (12%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEE 188
           S L  +YA  G +D+A +VFD+M  R A +  W +++  Y + G   +   L+  M    
Sbjct: 206 SALADMYAKCGRVDDARRVFDRMPVRDAVS--WTAMVERYFDGGRGGEGFRLFLHMLRTR 263

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV P++FT+  VL+ACA   +   G +VH    + G G   F  +AL+ MY+KCGD+  A
Sbjct: 264 GVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
             VF+ +   DL+S+ ++++GY  +G   EA   F   + +G  PD V    +L+     
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLS----- 378

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
              A  H  ++ +G+E    I     + ++ D     AC +       D++S +      
Sbjct: 379 ---ACAHAGLVDKGLEIFHSIKEQYCIEHTAD---HYACVI-------DLLSRSG----- 420

Query: 369 SKDHEALIYFEQMER----DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
                    FE+ E+      V P+   + SLL  C    +V +  R    + E    +P
Sbjct: 421 --------QFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENP 472

Query: 425 RVEHYACMVNLYGRAGLIDE 444
               Y  + N+Y   GL DE
Sbjct: 473 AT--YVTLANIYASVGLFDE 490


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 156/487 (32%), Positives = 257/487 (52%), Gaps = 50/487 (10%)

Query: 82  SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
           SV+    +      S+L  C  +  V+   ++H  I    L +   + +KLLR      +
Sbjct: 30  SVRQEQKILESRLVSVLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTKLDV 86

Query: 142 IDEAHQ--VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
             + +   VF Q+     F   W +LI GYA  G + +++ LY  M  +G+ P  FTF  
Sbjct: 87  PMDPYPRLVFQQVEYPNPFL--WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTA 144

Query: 200 VLKACAGLGLIRVGEKVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVFD----- 253
           +LKAC+    + +G +VH   +   GFG D +V N L+DMY KCG +     VFD     
Sbjct: 145 LLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDR 204

Query: 254 -------------RIGN-------------KDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
                        ++GN             KD++++ +M+TGY  +    EA ++F  M 
Sbjct: 205 DVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQ 264

Query: 288 LNGFDPDPVAISSILANASLLRIGAQVHGWVLRR------GVEWDLCIANSLIVVYSKDG 341
             G   D V +  +++  + L   A+   WV         G   ++ + ++LI +Y+K G
Sbjct: 265 AAGVKTDEVTLVGVISACAQLG-AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCG 323

Query: 342 KLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            ++ A  +F+ M +++V S++S+I     H     A+  F++M +  + P+ +TF+ +L+
Sbjct: 324 SVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLT 383

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+H G V+ G++LF++M E +G++P  +HYACMV+L GRAG ++EA ++ V+ M     
Sbjct: 384 ACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNL-VKMMPMNPH 442

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
             VWGALL AC +HGN  M + AA  LFELEP+   N+ LL  IY +AGR DDV +V ++
Sbjct: 443 GGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKL 502

Query: 519 LVDRGLE 525
           +  +GL+
Sbjct: 503 MRAKGLK 509


>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
          Length = 476

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 219/369 (59%), Gaps = 11/369 (2%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           +F WN+LI  +A      +A+ LY  M    V P + TFP +LKAC+    ++   +VH 
Sbjct: 93  SFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHT 152

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             ++FG   +  V+N LV  Y+   D+  AR VFD +  + L  + +M++GY  +    E
Sbjct: 153 HVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNE 212

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A ++F  MI+ G +P+   ++S+L   A +  L +G ++H ++  +G+E  + +  +L+ 
Sbjct: 213 ALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVH 272

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDH 390
           +Y+K+G +  A  LFD + +++  +WN++I     H H+K  EAL  F ++E++ ++P+ 
Sbjct: 273 MYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAK--EALDRFWKLEKEQIVPND 330

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFV +LSAC H G + VG ++F +M   YGI P++EHY CMV+L GR G + EA  +I 
Sbjct: 331 ITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELI- 389

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + M ++A  V+ GALL +C  HGN+ + E   +++  LEP N   + +L  +Y  AGR +
Sbjct: 390 KGMAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWE 449

Query: 511 DVERVERML 519
           DV R+ +++
Sbjct: 450 DVLRLRKVM 458



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 43/354 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  LL+ C   ++++  I++H  +    L  N  + + L+R Y+    +  A +VFD++
Sbjct: 130 TFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEV 189

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R+     W ++ISGYA+     +A+ L+ QM  EG+EP+  T   VL ACA  G + +
Sbjct: 190 SERSLSI--WTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDL 247

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H+     G      +  ALV MYAK G I+ A+ +FD I  ++  ++N+M+ G   
Sbjct: 248 GERIHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAV 307

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR-RGVEWDLC 328
           HG   EA D F  +      P+ +    +L+   +A LL +G ++   + R  G+E  + 
Sbjct: 308 HGHAKEALDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIE 367

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
               ++ +  + G+L +A  L   M  K                                
Sbjct: 368 HYGCMVDLLGRGGELLEAEELIKGMAWK-------------------------------A 396

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH--YACMVNLYGRAG 440
           D +   +LL +C + G++++ ER   V+ E   + P   H  Y  + N+Y  AG
Sbjct: 397 DVVILGALLGSCKNHGNIEIAER---VVKEILVLEPH-NHGVYVVLSNMYAEAG 446



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     T AS+L  C Q   ++ G ++H  +    +     + + L+ +YA  G I
Sbjct: 221 IVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYAKNGAI 280

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++FD +S R      WN++I G A  G  ++A+  ++++E+E + P+  TF  VL 
Sbjct: 281 LMAQKLFDXISERNTAT--WNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVGVLS 338

Query: 203 ACAGLGLIRVGEKV-HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           AC   GL+ VG K+ HL    +G          +VD+  + G++++A  +   +  K D+
Sbjct: 339 ACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWKADV 398

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +   ++L    +HG +  A  + + +++   +P    +  +L+N
Sbjct: 399 VILGALLGSCKNHGNIEIAERVVKEILV--LEPHNHGVYVVLSN 440



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 21/199 (10%)

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
           S+ G L  A  LF++  + +   WN++I AH+      EAL+ +  M R  V+P   TF 
Sbjct: 73  SESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFP 132

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
            LL AC++  S++   ++ +  V K+G+   +     +V  Y  +  +  A  +  E  E
Sbjct: 133 FLLKACSNFQSLQSCIQVHT-HVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSE 191

Query: 455 FEASPVVWGALL--YACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNA 506
              S  +W  ++  YA     N C  E  A +LF+      LEP N      ++     +
Sbjct: 192 RSLS--IWTTMISGYA----QNYCSNE--ALELFDQMIVEGLEP-NGATLASVLSACAQS 242

Query: 507 GRLDDVERVERMLVDRGLE 525
           G LD  ER+   + ++G+E
Sbjct: 243 GCLDLGERIHVFMEEKGIE 261


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 249/446 (55%), Gaps = 11/446 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     TF  LL+  ++L+   +  + H  I    L  +  + + L+  Y++ GL D
Sbjct: 97  RNGVIPSRHTFPPLLKAVFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFD 155

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A ++FD   ++      W ++I G+   G   +A+  + +M++ GV  ++ T   VLKA
Sbjct: 156 FASRLFDGAEDKDVVT--WTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213

Query: 204 CAGLGLIRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
              +  +R G  VH   +  G    D F+ ++LVDMY KC     A+ VFD + ++++++
Sbjct: 214 AGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + +++ GY+      +   +F  M+ +   P+   +SS+L   A+   L  G +VH +++
Sbjct: 274 WTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMI 333

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALI 376
           +  +E +     +LI +Y K G L++A  +F+ + +K+V +W ++I+   AH    +A  
Sbjct: 334 KNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFD 393

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F  M    V P+ +TF+++LSACAH G V+ G RLF  M  ++ + P+ +HYACMV+L+
Sbjct: 394 LFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLF 453

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GR GL++EA ++I E+M  E + VVWGAL  +C LH +  +G+ AA ++ +L+P +   +
Sbjct: 454 GRKGLLEEAKALI-ERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRY 512

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDR 522
            LL  +Y  +   D+V RV + + D+
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQ 538



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 165/324 (50%), Gaps = 19/324 (5%)

Query: 162 WNSLI---SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE--KV 216
           W+SLI   SG   L      +A Y  M   GV P + TFP +LKA   L   R     + 
Sbjct: 70  WDSLIGHFSGGITLNRRLSFLA-YRHMRRNGVIPSRHTFPPLLKAVFKL---RDSNPFQF 125

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H   V+FG   D FV N+L+  Y+  G    A  +FD   +KD++++ +M+ G++ +G  
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185

Query: 277 VEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG-VEWDLCIANS 332
            EA   F  M   G   + + + S+L  A     +R G  VHG  L  G V+ D+ I +S
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSS 245

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPD 389
           L+ +Y K    D A  +FD MP ++VV+W ++I  + +     + ++ FE+M +  V P+
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPN 305

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
             T  S+LSACAH+G++  G R+   M+ K  I         +++LY + G ++EA  ++
Sbjct: 306 EKTLSSVLSACAHVGALHRGRRVHCYMI-KNSIEINTTAGTTLIDLYVKCGCLEEAI-LV 363

Query: 450 VEKMEFEASPVVWGALLYACYLHG 473
            E++  E +   W A++     HG
Sbjct: 364 FERLH-EKNVYTWTAMINGFAAHG 386



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 3/178 (1%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
            E  +++ +    +T +S+L  C  + A+  G ++H  +  N +  N    + L+ LY  
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVK 353

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G ++EA  VF+++  +  +   W ++I+G+A  G   DA  L++ M    V P++ TF 
Sbjct: 354 CGCLEEAILVFERLHEKNVYT--WTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFM 411

Query: 199 RVLKACAGLGLIRVGEKVHLDAV-RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
            VL ACA  GL+  G ++ L    RF           +VD++ + G + +A+ + +R+
Sbjct: 412 AVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERM 469


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 228/415 (54%), Gaps = 40/415 (9%)

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A  +FD+M  R   +  WN++ISGYA+ GE  +A  L+    EE    D FT+  ++  
Sbjct: 141 DARGIFDRMPERDEVS--WNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSG 194

Query: 204 CAGLGLIRVGEKV-----HLDAVRFGFGFDGFV----------------------LNALV 236
               G++    +V       ++V +     G+V                       N ++
Sbjct: 195 YVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMI 254

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
             YA+ GDI +AR  FDR+  +D IS+ +++ GY   G   EA  +F  M  +G   +  
Sbjct: 255 TGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRS 314

Query: 297 AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353
             +S L   A  + L +G QVHG V++ G+E    + N+L+V+Y K G +D A  +F+ +
Sbjct: 315 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 374

Query: 354 PQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
            +K+VVSWN++I  +++     EAL+ FE M++ G+LPD +T V +LSAC+H G V  G 
Sbjct: 375 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT 434

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470
             F  M + YGI+   +HY CM++L GRAG +D+A +++ + M FE     WGALL A  
Sbjct: 435 EYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM-KNMPFEPDAATWGALLGASR 493

Query: 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +HGN  +GE AA+ +FE+EPDN   + LL  +Y  +GR  DV R+   + DRG++
Sbjct: 494 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 548



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 179/362 (49%), Gaps = 43/362 (11%)

Query: 31  RRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
           R  ++ ++S N  T  S Y ++    LL  Q+ F ++ ++ + +    +   VQNG+  +
Sbjct: 148 RMPERDEVSWN--TMISGYAQNGE--LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 203

Query: 91  TE------------TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
                         ++ +++    Q K ++   +L   +P     +N    + ++  YA 
Sbjct: 204 ARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC----QNVSSWNTMITGYAQ 259

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G I +A   FD+M  R + +  W ++I+GYA+ G  E+A+ L+ +M+ +G   ++ TF 
Sbjct: 260 NGDIAQARNFFDRMPQRDSIS--WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 317

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
             L  CA +  + +G++VH   V+ G     +V NAL+ MY KCG+I  A  VF+ I  K
Sbjct: 318 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 377

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318
           +++S+N+M+ GY  HG   EA  +F  M   G  PD V +  +L+  S        H  +
Sbjct: 378 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS--------HTGL 429

Query: 319 LRRGVEW------DLCI-ANS-----LIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           + +G E+      D  I ANS     +I +  + G+LD A  L  +MP + D  +W +++
Sbjct: 430 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 489

Query: 366 HA 367
            A
Sbjct: 490 GA 491



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 191/437 (43%), Gaps = 79/437 (18%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +FDQM  R   +  WN+++SGYA+ G  ++A  ++ +M  +    +  ++  +L A 
Sbjct: 49  ARLLFDQMPERDVVS--WNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAY 102

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
              G I    ++      +         N ++  Y K   +V AR +FDR+  +D +S+N
Sbjct: 103 VQNGRIEDARRLFESKADWEL----ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 158

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
           +M++GY  +G L+EA  +F    +         +S  + N  L        G   +  V 
Sbjct: 159 TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS 218

Query: 325 WDLCIA--------------------------NSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           W+  IA                          N++I  Y+++G + QA   FD MPQ+D 
Sbjct: 219 WNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS 278

Query: 359 VSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           +SW +II  +++     EAL  F +M+RDG   +  TF S LS CA + ++++G+++   
Sbjct: 279 ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 338

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG-- 473
           +V K G+         ++ +Y + G ID+AY ++ E +E E   V W  ++     HG  
Sbjct: 339 VV-KAGLESGCYVGNALLVMYCKCGNIDDAY-IVFEGIE-EKEVVSWNTMIAGYARHGFG 395

Query: 474 --------------------------NVC----MGETAAQKLFELEPD-----NEHNFEL 498
                                     + C    + +   +  + +  D     N  ++  
Sbjct: 396 KEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTC 455

Query: 499 LIKIYGNAGRLDDVERV 515
           +I + G AGRLDD + +
Sbjct: 456 MIDLLGRAGRLDDAQNL 472


>gi|414884271|tpg|DAA60285.1| TPA: hypothetical protein ZEAMMB73_421255 [Zea mays]
          Length = 686

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 271/530 (51%), Gaps = 57/530 (10%)

Query: 43  ITTFSSYPKSSPTPLLTN-------QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFA 95
           + T SS    S +P   N           P+  L A   ++       ++ +     T+ 
Sbjct: 110 LPTASSLAAGSTSPEPYNVLISACLNHGLPRHALAAYQKMVD------KDAVPPDAFTYP 163

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
            +L  C +   +  G  +H       +  +    + L+ +YA  G +  A +VFD M NR
Sbjct: 164 KVLRACAETADLVLGRAVHVRAAAAGMDGHLFFQNALVSMYAKCGDLAAARRVFDGMDNR 223

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL-------------- 201
              +  WNS+ISGYA  G++ +A+ L+ QM+ EG E +  T+  +               
Sbjct: 224 DVVS--WNSMISGYAASGQWREAVELFRQMQAEGAEANSVTWNTIAGGYIQMRDYRAALG 281

Query: 202 ---------------------KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240
                                 AC+  G +R+G+++H  AVR        V+NA++ MYA
Sbjct: 282 LIRDMVRGGAEVDFVTLVIGSNACSRAGWLRLGKEIHGLAVRMQCHEIDSVVNAVITMYA 341

Query: 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300
           +C D+ +A  +F  +    L+++N+ML G+        A  +FR M+ +   P+ V + +
Sbjct: 342 RCNDMERALMLFRTMRCPGLVAWNTMLAGFALLDDAEAASRLFREMVCSDVQPNYVTVVT 401

Query: 301 ILA---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
            LA     + L+ G ++H  ++R+G +    + NSLI +YSK G+L  A  +FD M  +D
Sbjct: 402 YLALCARVANLQHGQELHAHIIRQGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMDDRD 461

Query: 358 VVSWNSIIHAHSKDHEALI---YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           ++S+ S+I  +    + ++   +F+QM   G++PD +  V++LSAC+H G V  GE LF 
Sbjct: 462 MISFTSMIAGYGMQGKGIVSLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFD 521

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
            MV  YGI P++EHY+CMV+LY RAGL+++A  ++  +  F  +  +  AL+ AC+  GN
Sbjct: 522 KMVSSYGIKPQMEHYSCMVDLYARAGLLEKAEELL-NQTPFPPTSTMVAALVGACHEQGN 580

Query: 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           V +GE +A++L E++ +N  ++ L+  +Y  AG  +++  V +++ D G+
Sbjct: 581 VIIGERSARRLLEMKTENAGHYVLIANMYAAAGCWNELATVRKLMRDMGV 630


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 155/426 (36%), Positives = 235/426 (55%), Gaps = 20/426 (4%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           RL    + R +  +S++L+  YA  G +  A QVFD+   +  F   WN+L+   A    
Sbjct: 97  RLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFV--WNALLKALALADH 154

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL------IRVGEKVHLDAVRFGFGFD 228
            ++A+A    M   GV  D +++   LKAC  +         RV E VH  A+R G+   
Sbjct: 155 GDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVRE-VHAHAIRRGYALH 213

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V   L+D YAK G +  A +VF  +  ++++S+++M+  Y  +    +A ++F+ M+ 
Sbjct: 214 THVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMA 273

Query: 289 NGFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
           +  D  P+ + I S+L   A  + L  G  +H ++LRRG +  + + N+L+ +Y + G L
Sbjct: 274 SDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCL 333

Query: 344 DQACWLFDHMP-QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399
           +    +F  +  ++DVVSWNS+I     H    EA+  FE+M   G  P  +TF+S+L A
Sbjct: 334 EVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGA 393

Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
           C+H G V  G+ LF  MVE YG++PR EHYACMV+L GRAG +DEA  +I   M  E SP
Sbjct: 394 CSHAGLVNEGKMLFESMVE-YGVTPRAEHYACMVDLLGRAGQLDEAMELI-RSMHIEPSP 451

Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
            VWGALL AC +HG+V   E A   LF+LEP N  N+ LL  IY  A   + V  ++ +L
Sbjct: 452 QVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELL 511

Query: 520 VDRGLE 525
            +  LE
Sbjct: 512 EEHALE 517


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 233/401 (58%), Gaps = 11/401 (2%)

Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-V 190
           L+ +Y+       A +VF+ + +R   +  WN+++  Y  +G   +   +   M ++G V
Sbjct: 169 LITIYSYLDDPGAARKVFNGIPSRDVVS--WNAMMKAYGRVGMNGEVGRMLRDMVKDGAV 226

Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250
            P+  T   VL AC   G + +G  V   +   G   D  V +ALV MY KCG+I +AR 
Sbjct: 227 VPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARR 286

Query: 251 VFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---L 307
           VFD I +KD++++N+M+TGY  +G+  EA  +F  M   G  PD + ++ +L+  S    
Sbjct: 287 VFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGA 346

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           L +G+++ G+   RG+  ++ +  +L+ +Y+K G LD+A  +F  M  K+V SWN++I  
Sbjct: 347 LELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICG 406

Query: 368 ---HSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
              + +  EA+ +FE M   DG+ PD +TF+ +LSAC H G VK G+R F+ +  ++ I 
Sbjct: 407 LAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQII 466

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P++EHY+CMV+   R+G ++E +  I EK+  +   V+ GALL AC    NV +GE    
Sbjct: 467 PKIEHYSCMVDPLARSGHLEEVWDFI-EKIPDKVDAVMLGALLAACRKCKNVEIGERVIN 525

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           ++ +LEP N  N+ +  KIY ++GRLDD  ++  ++ +RG+
Sbjct: 526 RIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGV 566



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 181/375 (48%), Gaps = 39/375 (10%)

Query: 79  LESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA 137
           L   V++G  V    T A +L  C     +  G  +     +  +  +  + S L+ +Y 
Sbjct: 217 LRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYE 276

Query: 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
             G I EA +VFD + ++   A  WN++I+GYA+ G   +AI+L+  M++ GV PD+ T 
Sbjct: 277 KCGEIAEARRVFDSIIDKDVVA--WNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITL 334

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             VL AC+ +G + +G ++   A   G   + +V  ALVDMYAKCGD+ KA  VF ++  
Sbjct: 335 AGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRC 394

Query: 258 KDLISYNSMLTGYIHHGLLVEA---FDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314
           K++ S+N+++ G   +G   EA   F++ R    +G  PD +    +L+        A V
Sbjct: 395 KNVASWNALICGLAFNGQGDEAIQHFELMRNE--DGLKPDDITFIGVLS--------ACV 444

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEA 374
           H  +++ G  W     NSL   +    K++    + D +             A S   E 
Sbjct: 445 HAGLVKDGKRW----FNSLTSEFQIIPKIEHYSCMVDPL-------------ARSGHLEE 487

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMV 433
           +  F +   D V  D +   +LL+AC    +V++GER+ + +++   + P    +Y    
Sbjct: 488 VWDFIEKIPDKV--DAVMLGALLAACRKCKNVEIGERVINRIIQ---LEPTNSWNYVVSS 542

Query: 434 NLYGRAGLIDEAYSM 448
            +Y  +G +D++  M
Sbjct: 543 KIYASSGRLDDSAKM 557


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 256/483 (53%), Gaps = 14/483 (2%)

Query: 54  PTPLLTNQKAFPKTKLQALDSI--IQDLESSVQNGITVQTETFASLLETCYQLKAVEH-G 110
           P+P + +  AF     Q    +  +    + ++ G+     TF S  +           G
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139

Query: 111 IKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
            +LH L +    L  +  +S   L +Y   G +  A ++FD+M NR   A  WN++++  
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVA--WNAVMTNA 197

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229
              G   + +  YF +   G  P+  +      ACAG+  + +GE+ +    + GFG D 
Sbjct: 198 VLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDV 257

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            V N++VD Y KC  + KAR VFD +G ++ +S+ SM+  Y  +G   EAF ++ G    
Sbjct: 258 SVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRA 317

Query: 290 GFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
           G +P    +SS+L   +    L +G  +H   +R  ++ ++ +A++L+ +Y K G ++ A
Sbjct: 318 GEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDA 377

Query: 347 CWLFDHMPQKDVVSWNSII--HAHSKD-HEALIYFEQM-ERDGVLPDHLTFVSLLSACAH 402
             +F  MPQ+++V+WN++I  +AH  D H AL  F++M       P+++T V++L+AC+ 
Sbjct: 378 EQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSR 437

Query: 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462
            G  K G  LF  M  ++GI PR+EHYAC+V+L  RAG+ + AY  I++ M    S  VW
Sbjct: 438 GGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYK-IIQGMPMRPSISVW 496

Query: 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           GALL  C +HG   +G  AA+KLFEL+P +  N  LL  +  +AGR  +   V + + + 
Sbjct: 497 GALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNV 556

Query: 523 GLE 525
           G++
Sbjct: 557 GIK 559


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 234/437 (53%), Gaps = 16/437 (3%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA--TFGLIDEAHQVFDQMS 153
           +LL+ C  LK +    K+H  +  + L  +  I++KLL   A    G +  A  +F QM 
Sbjct: 9   ALLQGCNSLKRLR---KIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQME 65

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRV 212
                A  WNS+I G+A+     DAI  Y QM  +    PD FTF  VLKAC  +   R 
Sbjct: 66  CPQTEA--WNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERK 123

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH   +R G+  D  V   LV  Y+  G +  AR VFD++  +DL+++N+M++ +  
Sbjct: 124 CKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQ 183

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
            GL  EA   +  M     D D    V + S  A+   L IG Q+H +    G++  L +
Sbjct: 184 QGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYV 243

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGV 386
            N+LI +Y+K G LDQA  +FD M +KD+ +WNS+I     H +  EA+  F+QM    +
Sbjct: 244 GNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARI 303

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+ LL  C+H G V+ G + F++M  K+ + P V+HY C+V+LYGRAG +D+A 
Sbjct: 304 QPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKAL 363

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            ++      ++  V+W  LL +C +H NV +GE A  +L EL   +  +  LL  IY   
Sbjct: 364 EIVSNSSHNDS--VLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGE 421

Query: 507 GRLDDVERVERMLVDRG 523
                V R+ +M+  +G
Sbjct: 422 KDKAGVARMRKMIKSQG 438



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 194/402 (48%), Gaps = 50/402 (12%)

Query: 41  NRITTFSSYPKSSP---TPLLTNQKAFPKTKLQALDSIIQDLESS-------------VQ 84
           N++  F +   S       LL +Q   P+T  +A +SII+    S             V 
Sbjct: 40  NKLLNFCAISVSGSLAYAQLLFHQMECPQT--EAWNSIIRGFAQSSSPIDAIVFYNQMVC 97

Query: 85  NGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +  ++  T TF+ +L+ C ++KA     ++H  +       +  + + L++ Y+  G + 
Sbjct: 98  DSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVC 157

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A QVFD+M  R   A  WN++IS +++ G +++A+  Y QM  E V+ D FT   ++ +
Sbjct: 158 IARQVFDKMPARDLVA--WNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISS 215

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA LG + +G ++H  A   G     +V NAL+DMYAKCG + +A  +FDR+  KD+ ++
Sbjct: 216 CAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTW 275

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           NSM+ GY  HG   EA   F+ M+     P+PV    +L   S        H  +++ GV
Sbjct: 276 NSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS--------HQGLVQEGV 327

Query: 324 EWDLCIAN------------SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
           ++   +++             L+ +Y + GKLD+A  +  +    D V W  I+    K 
Sbjct: 328 KYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWR-ILLGSCKI 386

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSA--CAHLGSVKVGER 411
           H+ +   E      +  + L+ +   SA  C  L ++  GE+
Sbjct: 387 HKNVTIGE------IAMNRLSELGATSAGDCILLATIYAGEK 422



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI--VVYSKDGKLDQACWLFDHMP 354
           AI ++L   + L+   ++H  V+  G+   + IAN L+     S  G L  A  LF  M 
Sbjct: 6   AILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQME 65

Query: 355 QKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV-LPDHLTFVSLLSACAHLGSVKVGE 410
                +WNSII   ++     +A++++ QM  D   +PD  TF  +L AC  + + +  +
Sbjct: 66  CPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCK 125

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL 466
            +   ++ + G    V     +V  Y   G      S+ + +  F+  P    V W A++
Sbjct: 126 EVHGSVI-RCGYDADVIVCTNLVKCYSAMG------SVCIARQVFDKMPARDLVAWNAMI 178

Query: 467 YACY 470
            +C+
Sbjct: 179 -SCF 181


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 243/439 (55%), Gaps = 12/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN-KGISSKLLRLYATFGLIDEAHQVFDQ 151
           T   +L  C +L  V+ G  +H  +    +      +   L+ LYA  G + + H+VF+ 
Sbjct: 304 TMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFET 363

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           +  +T  +  WN+LIS +   G+ E+A+ L+ QM+ +G+ PD ++    L AC  +   +
Sbjct: 364 IKEKTILS--WNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQ 421

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +G ++H   ++ G  F+ FV NAL+DMYAKCG +  A  +F++I  K L+++NSM+ G+ 
Sbjct: 422 LGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFS 480

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLC 328
            +G  VEA  +F  M +N    D +   S++   S    L  G  VH  ++  G+  D  
Sbjct: 481 QNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSY 540

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +  +L  +YSK G+L  A  +FD M ++ +VSW+ +I     H + +  +  F QM   G
Sbjct: 541 LDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSG 600

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+ +TF+ +LSAC+H G+V+ G+  F+ M E +G+ P+ +H+ACMV+L  RAG ++ A
Sbjct: 601 IKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGA 659

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
           Y  I+  + F A+  +WGALL  C +H  + + ++  + L +++  +   + LL  IY  
Sbjct: 660 YQ-IITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAE 718

Query: 506 AGRLDDVERVERMLVDRGL 524
            G  D   +V  M+  +GL
Sbjct: 719 EGTWDKFGKVRSMMKSKGL 737



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 193/363 (53%), Gaps = 13/363 (3%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH  +    L ++   S+KL+  YA  G+ + + +VFD      +F   W  LI  Y  
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFM--WGVLIKCYVW 76

Query: 172 LGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
            G +E+A++LY +M  ++  +   F FP VLKAC+G G + VG KVH   ++ GF  D  
Sbjct: 77  GGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAV 136

Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290
           V  +L+ MY +   +  A   FD +  +D+++++S++  ++ +G   E  D+F  MI   
Sbjct: 137 VETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA 196

Query: 291 FDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
            +PD V + S+    S    LR+G  VHG+V+RR +E +  + NSLIV+Y K G L  A 
Sbjct: 197 VEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAE 256

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404
            LF+++P +    W  +I  +++     EAL  F +M+   + P+ +T V +L ACA LG
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316

Query: 405 SVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
            VK G  +   ++ +  + P ++     ++ LY   G + + +  + E ++ E + + W 
Sbjct: 317 RVKEGRSVHGFVIRR-AMDPELDFLGPALMELYADTGNLRDCHK-VFETIK-EKTILSWN 373

Query: 464 ALL 466
            L+
Sbjct: 374 TLI 376



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 202/390 (51%), Gaps = 13/390 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           Q+   +    F S+L+ C     +  G K+H  +       +  + + LL +Y     +D
Sbjct: 93  QDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLD 152

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A + FD M  R   A  W+S++  + + G+  + + ++ QM  E VEPD  T   V +A
Sbjct: 153 DACKAFDTMPIRDVVA--WSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEA 210

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C+ LG +R+G  VH   VR     +  + N+L+ MY K GD+  A  +F+ +  +    +
Sbjct: 211 CSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPW 270

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQVHGWVLR 320
             M++ Y   G   EA ++F  M     +P+ V +  +L A A L R+  G  VHG+V+R
Sbjct: 271 TPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIR 330

Query: 321 RGVEWDL-CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           R ++ +L  +  +L+ +Y+  G L     +F+ + +K ++SWN++I   +++    EAL+
Sbjct: 331 RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 390

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F QM+  G++PD  +  S LSAC  +   ++G ++   +++    +  V++   ++++Y
Sbjct: 391 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN--ALIDMY 448

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            + G +  A  M  EK++ E S V W +++
Sbjct: 449 AKCGFVHSANKMF-EKIK-EKSLVTWNSMI 476



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 145/326 (44%), Gaps = 49/326 (15%)

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L++ YA+ G    ++ VFD     D   +  ++  Y+  G   EA  ++  M+      D
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQ----D 94

Query: 295 PVAISSILANASL--------LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346
              IS+ +  + L        L +G +VHG V++ G E D  +  SL+ +Y +   LD A
Sbjct: 95  QTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDA 154

Query: 347 CWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
           C  FD MP +DVV+W+SI+     + +  E L  F QM  + V PD +T +S+  AC+ L
Sbjct: 155 CKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSEL 214

Query: 404 GSVKVGERLFSVMVEK----------------------YGISPRVEHYAC--------MV 433
           GS+++G  +   +V +                      Y      E+  C        M+
Sbjct: 215 GSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMI 274

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           + Y ++G   EA ++  +  EF+  P  V    +L AC   G V  G +    +     D
Sbjct: 275 SCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMD 334

Query: 492 NEHNF--ELLIKIYGNAGRLDDVERV 515
            E +F    L+++Y + G L D  +V
Sbjct: 335 PELDFLGPALMELYADTGNLRDCHKV 360



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           N + +   TF S+++ C  L  +E G  +H  +    LRK+  + + L  +Y+  G +  
Sbjct: 498 NCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQM 557

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           AH VFD+MS R+  +  W+ +I+GY   G+    I+L+ QM   G++P+  TF  +L AC
Sbjct: 558 AHGVFDRMSERSIVS--WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 615

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           +  G +  G+        FG          +VD+ ++ GD+  A  +   +        N
Sbjct: 616 SHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLP----FPAN 671

Query: 265 SMLTGYIHHGLLV-EAFDIFRGMILNGFDPD 294
           S + G + +G  + +  DI + +  N  D D
Sbjct: 672 SSIWGALLNGCRIHKRIDIIKSIEKNLLDVD 702


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 266/496 (53%), Gaps = 32/496 (6%)

Query: 46  FSSYPK---SSPTPLLTN--QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLET 100
           F + P+   ++ T LLT   Q + P   L AL   I+ LE+    G      T   +L  
Sbjct: 116 FDNLPRRNVNAWTTLLTGYVQNSHP---LLALQLFIKMLEA----GAYPSNYTLGIVLNA 168

Query: 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           C  L+++E G ++H  +    +  +  I + L   Y+ F  ++ A + F  +  +   + 
Sbjct: 169 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVIS- 227

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            W S+IS   + G+   +++ +  M  +G++P+++T   VL AC  +  + +G ++H  +
Sbjct: 228 -WTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLS 286

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE-- 278
           ++ G+G    + N+++ +Y KCG +++A+ +F+ +   +L+++N+M+ G+     L E  
Sbjct: 287 IKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDD 346

Query: 279 ---------AFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRRGVEWD 326
                    A  +F+ +  +G  PD    SS+L+   N   L  G Q+HG +++ GV  D
Sbjct: 347 VAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLAD 406

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           + +  +L+ +Y+K G +D+A   F  MP + ++SW S+I     H    +AL  FE M  
Sbjct: 407 VVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRL 466

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G+ P+ +TFV +LSAC+H G        F +M ++Y I P ++H+AC++++Y R G ++
Sbjct: 467 VGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVE 526

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA+  +V KM FE +  +W  L+  C  HG   +G  AA++L +L+P +   +  L+ ++
Sbjct: 527 EAFD-VVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMH 585

Query: 504 GNAGRLDDVERVERML 519
            +AGR  DV +V +++
Sbjct: 586 ISAGRWKDVSKVRKLM 601



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 221/448 (49%), Gaps = 31/448 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  +++  +  LL+ C           +H  I      ++  + + L+ +Y+  G+++ A
Sbjct: 53  GTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 112

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           H+VFD +  R   A  W +L++GY +      A+ L+ +M E G  P  +T   VL AC+
Sbjct: 113 HKVFDNLPRRNVNA--WTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACS 170

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L  I  G++VH   +++   FD  + N+L   Y+K   +  A   F  I  KD+IS+ S
Sbjct: 171 SLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTS 230

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRG 322
           +++    +G    +   F  M+ +G  P+   ++S+L+   +   L +GAQ+H   ++ G
Sbjct: 231 VISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLG 290

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK------------ 370
               + I NS++ +Y K G L +A  LF+ M   ++V+WN++I  H+K            
Sbjct: 291 YGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAH 350

Query: 371 --DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
                AL  F+++ R G+ PD  TF S+LS C++L +++ GE++   ++ K G+   V  
Sbjct: 351 KSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII-KSGVLADVVV 409

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ----- 483
              +V++Y + G ID+A    +E      + + W +++     HG   + + A Q     
Sbjct: 410 GTALVSMYNKCGSIDKASKAFLEMP--SRTMISWTSMITGFARHG---LSQQALQLFEDM 464

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDD 511
           +L  ++P N+  F  ++    +AG  D+
Sbjct: 465 RLVGIKP-NQVTFVGVLSACSHAGLADE 491


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 143/427 (33%), Positives = 243/427 (56%), Gaps = 20/427 (4%)

Query: 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169
           G ++H     N L  N  I + L+ +YA    +      F+ M  +   +  W ++I+GY
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLIS--WTTIIAGY 425

Query: 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-- 227
           A+   + +AI L+ +++ +G++ D      VL+AC+GL       ++H      G+ F  
Sbjct: 426 AQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH------GYVFKR 479

Query: 228 ---DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
              D  + NA+V++Y + G I  AR  F+ I +KD++S+ SM+T  +H+GL VEA ++F 
Sbjct: 480 DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 285 GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            +      PD +AI S L   AN S L+ G ++HG+++R+G   +  IA+SL+ +Y+  G
Sbjct: 540 SLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCG 599

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            ++ +  +F  + Q+D++ W S+I+A   H   ++A+  F++M    V+PDH+TF++LL 
Sbjct: 600 TVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLY 659

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
           AC+H G +  G+R F +M   Y + P  EHYACMV+L  R+  ++EAY   V  M  + S
Sbjct: 660 ACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYH-FVRNMPIKPS 718

Query: 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518
             +W ALL AC++H N  +GE AA++L + + +N   + L+  I+   GR +DVE V   
Sbjct: 719 SEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLR 778

Query: 519 LVDRGLE 525
           +   GL+
Sbjct: 779 MKGNGLK 785



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 205/354 (57%), Gaps = 13/354 (3%)

Query: 97  LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156
           LL+ C   KA+  G +LH L+  + L  +  +++KL+ +Y   G + +A +VFD+MS RT
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
            F+  WN+L+  +   G+Y +AI LY  M   GV  D  TFP VLKAC  LG  R+G ++
Sbjct: 110 IFS--WNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEI 167

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHG 274
           H  AV+ G+G   FV NAL+ MY KCGD+  AR +FD I    +D +S+NS+++ ++  G
Sbjct: 168 HGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEG 227

Query: 275 LLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
             +EA  +FR M   G   +    VA    + + S +++G  +HG VL+     D+ +AN
Sbjct: 228 NCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVAN 287

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLP 388
           +LI +Y+K G+++ A  +F+ M  +D VSWN+++    ++    +AL YF  M+  G  P
Sbjct: 288 ALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKP 347

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
           D ++ ++L++A    G++  G+ + +  + + G+   ++    +V++Y +   +
Sbjct: 348 DQVSVLNLIAASGRSGNLLKGKEVHAYAI-RNGLDSNMQIGNTLVDMYAKCCCV 400



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 206/399 (51%), Gaps = 20/399 (5%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+ +   TF S+L+ C  L     G ++H +       +   + + L+ +Y   G +  A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGA 199

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +FD +         WNS+IS +   G   +A++L+ +M+E GV  + +TF   L+   
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               +++G  +H   ++     D +V NAL+ MYAKCG +  A  VF+ +  +D +S+N+
Sbjct: 260 DPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNT 319

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NASLLRIGAQVHGWVLRR 321
           +L+G + + L  +A + FR M  +G  PD V++ +++A    + +LL+ G +VH + +R 
Sbjct: 320 LLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLK-GKEVHAYAIRN 378

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G++ ++ I N+L+ +Y+K   +      F+ M +KD++SW +II  ++++    EA+  F
Sbjct: 379 GLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLF 438

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +++  G+  D +   S+L AC+ L S      +   + ++      +++   +VN+YG 
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQN--AIVNVYGE 496

Query: 439 AGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHG 473
            G ID A      +  FE+      V W +++  C  +G
Sbjct: 497 VGHIDYA------RRAFESIRSKDIVSWTSMITCCVHNG 529



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 29/301 (9%)

Query: 86  GITVQTETFASLLETCYQLKAVE-----HGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
           G+ V      S+L  C  LK+       HG    R +   +L+      + ++ +Y   G
Sbjct: 445 GMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ------NAIVNVYGEVG 498

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
            ID A + F+ +  R+     W S+I+     G   +A+ L++ +++  ++PD       
Sbjct: 499 HIDYARRAFESI--RSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISA 556

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L A A L  ++ G+++H   +R GF  +G + ++LVDMYA CG +  +R +F  +  +DL
Sbjct: 557 LSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDL 616

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV--- 314
           I + SM+     HG   +A  +F+ M      PD +   ++L   +++ L+  G +    
Sbjct: 617 ILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEI 676

Query: 315 --HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-WNSII---HAH 368
             +G+ L    E   C+ + L    S+   L++A     +MP K     W +++   H H
Sbjct: 677 MKYGYQLEPWPEHYACMVDLL----SRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIH 732

Query: 369 S 369
           S
Sbjct: 733 S 733



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           A  L  G Q+H  +L+  +   L  A  L+++Y K G L  A  +FD M ++ + SWN++
Sbjct: 59  AKALPQGQQLHALLLKSHLSAFL--ATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNAL 116

Query: 365 IHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           + A     K  EA+  ++ M   GV  D  TF S+L AC  LG  ++G  +  V V K G
Sbjct: 117 MGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAV-KCG 175

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
               V     ++ +YG+ G +  A  +    M  +   V W +++ A    GN
Sbjct: 176 YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGN 228


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 213/358 (59%), Gaps = 8/358 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F S+L      + V +G ++H +   N L     + + L+ +YA  G +D+A Q F+  S
Sbjct: 212 FTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSS 271

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           ++ +    W+++I+G A+ G+ + A+ L+  M   G+ P +FTF  V+ AC+ LG    G
Sbjct: 272 DKNSIT--WSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG 329

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           ++VH   ++ GF    +V+ ALVDMYAKC  IV AR  FD +   D++ + SM+ GY+ +
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQN 389

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIA 330
           G   +A  ++  M + G  P+ + ++S+L   S    L  G Q+H   ++ G   ++ I 
Sbjct: 390 GENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIG 449

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
           ++L  +Y+K G L     +F  MP +DV+SWN++I   S++    EAL  FE+M+ +G  
Sbjct: 450 SALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTK 509

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           PD++TFV++LSAC+H+G V+ G   F +M +++G+ PRVEHYACMV++  RAG + EA
Sbjct: 510 PDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEA 567



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 218/456 (47%), Gaps = 63/456 (13%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + S L+ +Y   GL  EA +VFD M  R + +  W ++ISGYA      +A+ L+  M  
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVS--WATMISGYASQKLAAEALGLFRLMRR 202

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           E    ++F F  VL A     L+  G+++H  AV+ G      V NALV MYAKCG +  
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDD 262

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           A   F+   +K+ I++++M+TG    G   +A  +F  M L+G  P       ++   S 
Sbjct: 263 ALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSD 322

Query: 308 LRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L     G QVH ++L+ G E  + +  +L+ +Y+K   +  A   FD++ + D+V W S+
Sbjct: 323 LGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSM 382

Query: 365 IHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  + ++ E   AL  + +ME +G+LP+ LT  S+L AC+ L +++ G+++ +  V KYG
Sbjct: 383 IGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTV-KYG 441

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAY---------------SMI---------------VE 451
               V   + +  +Y + G + +                 +MI                E
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501

Query: 452 KMEFEASP---VVWGALLYACYLHGNVCMGETAAQKLFE---LEPDNEHNFELLIKIYGN 505
           +M+ E +    V +  +L AC   G V  G    + +F+   ++P  EH +  ++ I   
Sbjct: 502 EMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEH-YACMVDILSR 560

Query: 506 AGRL-----------------DDVERVERMLVDRGL 524
           AG+L                 +DVERV RM+  RG+
Sbjct: 561 AGKLKEAIEFTESATIDHGMWEDVERVRRMMKLRGV 596



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 187/363 (51%), Gaps = 19/363 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISSKLLRLYATFGLIDEAHQVFD 150
           F +LL+  +  ++++ G  LH      +++ +     I++ L+ LYA    + EA  VF+
Sbjct: 10  FTALLQYTHN-RSLQKGKALH----AQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFE 64

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDA--IALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           ++ N+   +  WN +I+GY++ G    +  + L+ +M  E   P+  TF  V  A + L 
Sbjct: 65  RIQNKDVVS--WNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLV 122

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               G   H  A++     D FV ++L++MY K G   +AR VFD +  ++ +S+ +M++
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEW 325
           GY    L  EA  +FR M       +    +S+L+  +L  +   G Q+H   ++ G+  
Sbjct: 183 GYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLS 242

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HAHSKDHE-ALIYFEQME 382
            + + N+L+ +Y+K G LD A   F+    K+ ++W+++I   A S D + AL  F  M 
Sbjct: 243 IVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMH 302

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ P   TFV +++AC+ LG+   G+++   ++ K G   ++     +V++Y +   I
Sbjct: 303 LSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLL-KLGFESQIYVMTALVDMYAKCSSI 361

Query: 443 DEA 445
            +A
Sbjct: 362 VDA 364



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 139/268 (51%), Gaps = 10/268 (3%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +GI     TF  ++  C  L A   G ++H  +          + + L+ +YA    I +
Sbjct: 304 SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVD 363

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A + FD +         W S+I GY + GE EDA++LY +ME EG+ P++ T   VLKAC
Sbjct: 364 ARKGFDYLQEPDIVL--WTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKAC 421

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           + L  +  G+++H   V++GFG +  + +AL  MYAKCG +     VF R+  +D+IS+N
Sbjct: 422 SSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWN 481

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR--- 321
           +M++G   +G   EA ++F  M L G  PD V   +IL+  S   +G    GW   R   
Sbjct: 482 AMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS--HMGLVERGWGYFRMMF 539

Query: 322 ---GVEWDLCIANSLIVVYSKDGKLDQA 346
              G++  +     ++ + S+ GKL +A
Sbjct: 540 DEFGMDPRVEHYACMVDILSRAGKLKEA 567


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 247/437 (56%), Gaps = 14/437 (3%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           +S+L +C  L A+  G ++H       L  +  +++ L+ +YA    + +A +VFD  + 
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 155 RTAFAFPWNSLISGYAELG---EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
                F  N++I GY+ LG   E  +A+ ++  M    + P   TF  +L+A A L  + 
Sbjct: 414 ADVVLF--NAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           + +++H    ++G   D F  +AL+D+Y+ C  +  +R VFD +  KDL+ +NSM  GY+
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLC 328
                 EA ++F  + L+   PD    ++++    N + +++G + H  +L+RG+E +  
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           I N+L+ +Y+K G  + A   FD    +DVV WNS+I +   H +  +AL   E+M  +G
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG 651

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           + P+++TFV +LSAC+H G V+ G + F +M+ ++GI P  EHY CMV+L GRAG +++A
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAGRLNKA 710

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
             +I EKM  + + +VW +LL  C   GNV + E AA+     +P +  +F +L  IY +
Sbjct: 711 RELI-EKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYAS 769

Query: 506 AGRLDDVERV-ERMLVD 521
            G   + ++V ERM V+
Sbjct: 770 KGMWTEAKKVRERMKVE 786



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 234/470 (49%), Gaps = 49/470 (10%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            +++L  C  L  +E G ++H  I    L  +  + + L+  Y   G +  AH++F+ M 
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           N+   +  W +L+SGY +   +++A+ L+  M + G++PD +    +L +CA L  +  G
Sbjct: 312 NKNIIS--WTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFG 369

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +VH   ++   G D +V N+L+DMYAKC  +  AR VFD     D++ +N+M+ GY   
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRL 429

Query: 274 GL---LVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRIG--AQVHGWVLRRGVEWDL 327
           G    L EA +IFR M      P  +   S+L A+ASL  +G   Q+HG + + G+  D+
Sbjct: 430 GTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDI 489

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERD 384
              ++LI VYS    L  +  +FD M  KD+V WNS+   +   S++ EAL  F +++  
Sbjct: 490 FAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLS 549

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
              PD  TF ++++A  +L SV++G+  F   + K G+         ++++Y + G  ++
Sbjct: 550 RERPDEFTFANMVTAAGNLASVQLGQE-FHCQLLKRGLECNPYITNALLDMYAKCGSPED 608

Query: 445 AYS------------------------------MIVEKME---FEASPVVWGALLYACYL 471
           A+                                ++EKM     E + + +  +L AC  
Sbjct: 609 AHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSH 668

Query: 472 HGNVCMGETAAQKL--FELEPDNEHNFELLIKIYGNAGRLDDV-ERVERM 518
            G V  G    + +  F +EP+ EH +  ++ + G AGRL+   E +E+M
Sbjct: 669 AGLVEDGLKQFELMLRFGIEPETEH-YVCMVSLLGRAGRLNKARELIEKM 717



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 218/412 (52%), Gaps = 23/412 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + L+  Y   G ID A  VFD +  ++     W ++ISG  ++G    ++ L++Q+ E
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVT--WTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 188 EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247
           + V PD +    VL AC+ L  +  G+++H   +R+G   D  ++N L+D Y KCG ++ 
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIA 302

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN-AS 306
           A  +F+ + NK++IS+ ++L+GY  + L  EA ++F  M   G  PD  A SSIL + AS
Sbjct: 303 AHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCAS 362

Query: 307 L--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           L  L  G QVH + ++  +  D  + NSLI +Y+K   L  A  +FD     DVV +N++
Sbjct: 363 LHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAM 422

Query: 365 IHAHSK------DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           I  +S+       HEAL  F  M    + P  LTFVSLL A A L S+ + +++  +M  
Sbjct: 423 IEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF- 481

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           KYG++  +   + ++++Y     + ++  ++ ++M+ +   V+W + ++A Y+  +    
Sbjct: 482 KYGLNLDIFAGSALIDVYSNCYCLKDS-RLVFDEMKVK-DLVIWNS-MFAGYVQQS--EN 536

Query: 479 ETAAQKLFELE-----PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           E A     EL+     PD E  F  ++   GN   +   +     L+ RGLE
Sbjct: 537 EEALNLFLELQLSRERPD-EFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 160/300 (53%), Gaps = 11/300 (3%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-E 186
           +S+ L+ LY+  G +  A +VF++M  R   +  W++++S     G YE+++ ++ +   
Sbjct: 81  LSNILINLYSRAGGMVYARKVFEKMPERNLVS--WSTMVSACNHHGIYEESLVVFLEFWR 138

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA--VRFGFGFDGFVLNALVDMYAKCGD 244
                P+++     ++AC+GL          L +  V+ GF  D +V   L+D Y K G+
Sbjct: 139 TRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGN 198

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           I  AR VFD +  K  +++ +M++G +  G    +  +F  ++ +   PD   +S++L+ 
Sbjct: 199 IDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSA 258

Query: 305 ASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            S+L     G Q+H  +LR G+E D  + N LI  Y K G++  A  LF+ MP K+++SW
Sbjct: 259 CSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISW 318

Query: 362 NSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
            +++  + ++    EA+  F  M + G+ PD     S+L++CA L ++  G ++ +  ++
Sbjct: 319 TTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIK 378



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 175/369 (47%), Gaps = 41/369 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF SLL     L ++    ++H L+    L  +    S L+ +Y+    + ++  VFD+M
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +      WNS+ +GY +  E E+A+ L+ +++     PD+FTF  ++ A   L  +++
Sbjct: 516 KVKDLVI--WNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++ H   ++ G   + ++ NAL+DMYAKCG    A   FD   ++D++ +NS+++ Y +
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           HG   +A  +   M+  G +P+ +    +L   ++A L+  G +    +LR G+E +   
Sbjct: 634 HGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEH 693

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389
              ++ +  + G+L++A  L + MP K                               P 
Sbjct: 694 YVCMVSLLGRAGRLNKARELIEKMPTK-------------------------------PA 722

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDEAYSM 448
            + + SLLS CA  G+V++ E    + +      P+    +  + N+Y   G+  EA   
Sbjct: 723 AIVWRSLLSGCAKAGNVELAEHAAEMAILS---DPKDSGSFTMLSNIYASKGMWTEA-KK 778

Query: 449 IVEKMEFEA 457
           + E+M+ E 
Sbjct: 779 VRERMKVEG 787



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 139/261 (53%), Gaps = 10/261 (3%)

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
           F R+L+  A   L+     VH   + +G   D ++ N L+++Y++ G +V AR VF+++ 
Sbjct: 47  FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP 106

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-PDPVAISSILANASLLR-----I 310
            ++L+S+++M++   HHG+  E+  +F        D P+   +SS +   S L      +
Sbjct: 107 ERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWM 166

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
             Q+  ++++ G + D+ +   LI  Y KDG +D A  +FD +P+K  V+W ++I     
Sbjct: 167 VFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVK 226

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
             + + +L  F Q+  D V+PD     ++LSAC+ L  ++ G+++ + ++ +YG+     
Sbjct: 227 MGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL-RYGLEMDAS 285

Query: 428 HYACMVNLYGRAGLIDEAYSM 448
               +++ Y + G +  A+ +
Sbjct: 286 LMNVLIDSYVKCGRVIAAHKL 306


>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 474

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 219/369 (59%), Gaps = 11/369 (2%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           +F WN+LI  +A      +A+ LY  M    V P + TFP +LKAC+    ++   +VH 
Sbjct: 91  SFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHT 150

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
             ++FG   +  V+N LV  Y+   D+  AR VFD +  + L  + +M++GY  +    E
Sbjct: 151 HVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNE 210

Query: 279 AFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIV 335
           A ++F  MI+ G +P+   ++S+L   A +  L +G ++H ++  +G+E  + +  +L+ 
Sbjct: 211 ALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVH 270

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHEALIYFEQMERDGVLPDH 390
           +Y+K+G +  A  LFD + +++  +WN++I     H H+K  EAL  F ++E++ ++P+ 
Sbjct: 271 MYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAK--EALDRFWKLEKEQIVPND 328

Query: 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450
           +TFV +LSAC H G + VG ++F +M   YGI P++EHY CMV+L GR G + EA  +I 
Sbjct: 329 ITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELI- 387

Query: 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510
           + M ++A  V+ GALL +C  HGN+ + E   +++  LEP N   + +L  +Y  AGR +
Sbjct: 388 KGMAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWE 447

Query: 511 DVERVERML 519
           DV R+ +++
Sbjct: 448 DVLRLRKVM 456



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 43/354 (12%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  LL+ C   ++++  I++H  +    L  N  + + L+R Y+    +  A +VFD++
Sbjct: 128 TFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEV 187

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           S R+     W ++ISGYA+     +A+ L+ QM  EG+EP+  T   VL ACA  G + +
Sbjct: 188 SERSLSI--WTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDL 245

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE++H+     G      +  ALV MYAK G I+ A+ +FD I  ++  ++N+M+ G   
Sbjct: 246 GERIHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAV 305

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLR-RGVEWDLC 328
           HG   EA D F  +      P+ +    +L+   +A LL +G ++   + R  G+E  + 
Sbjct: 306 HGHAKEALDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIE 365

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
               ++ +  + G+L +A  L   M  K                                
Sbjct: 366 HYGCMVDLLGRGGELLEAEELIKGMAWK-------------------------------A 394

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH--YACMVNLYGRAG 440
           D +   +LL +C + G++++ ER   V+ E   + P   H  Y  + N+Y  AG
Sbjct: 395 DVVILGALLGSCKNHGNIEIAER---VVKEILVLEPH-NHGVYVVLSNMYAEAG 444



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +  G+     T AS+L  C Q   ++ G ++H  +    +     + + L+ +YA  G I
Sbjct: 219 IVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYAKNGAI 278

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++FD +S R      WN++I G A  G  ++A+  ++++E+E + P+  TF  VL 
Sbjct: 279 LMAQKLFDTISERNTAT--WNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVGVLS 336

Query: 203 ACAGLGLIRVGEKV-HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DL 260
           AC   GL+ VG K+ HL    +G          +VD+  + G++++A  +   +  K D+
Sbjct: 337 ACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWKADV 396

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
           +   ++L    +HG +  A  + + +++   +P    +  +L+N
Sbjct: 397 VILGALLGSCKNHGNIEIAERVVKEILV--LEPHNHGVYVVLSN 438



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 21/199 (10%)

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
           S+ G L  A  LF++  + +   WN++I AH+      EAL+ +  M R  V+P   TF 
Sbjct: 71  SESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFP 130

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
            LL AC++  S++   ++ +  V K+G+   +     +V  Y  +  +  A  +  E  E
Sbjct: 131 FLLKACSNFQSLQSCIQVHT-HVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSE 189

Query: 455 FEASPVVWGALL--YACYLHGNVCMGETAAQKLFE------LEPDNEHNFELLIKIYGNA 506
              S  +W  ++  YA     N C  E  A +LF+      LEP N      ++     +
Sbjct: 190 RSLS--IWTTMISGYA----QNYCSNE--ALELFDQMIVEGLEP-NGATLASVLSACAQS 240

Query: 507 GRLDDVERVERMLVDRGLE 525
           G LD  ER+   + ++G+E
Sbjct: 241 GCLDLGERIHVFMEEKGIE 259


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 151/451 (33%), Positives = 234/451 (51%), Gaps = 16/451 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+ V T T   +++ C     +  G ++H  I          I + LL LY   GL D
Sbjct: 72  KKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLY---GLFD 128

Query: 144 E---AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           E     Q+FD+M  R      WN+LI+ YA          + + M    V+P+  T   +
Sbjct: 129 EDCGLQQIFDEMPQRDLVM--WNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSI 186

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L  C+ L  +R G+ VH    +    FD FV NAL+ +Y+KCG I  A  VF  +  +++
Sbjct: 187 LSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNV 246

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGW 317
           +S+ S++ GY  +    EA   F+ M      PD + +  ++   S LR   +G  +  +
Sbjct: 247 VSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQY 306

Query: 318 VLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           V++ G+ +    IAN+L+ +++K G +++AC +FD M +K +VSW  +I     H     
Sbjct: 307 VVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLS 366

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL+ F QM+R+G  PD L F+SLLSAC+H G V  G R FS M   Y ISP +EHY CMV
Sbjct: 367 ALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCMV 426

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           ++  RAGL+DEA+   V+ M  +   +VW  LL AC+  GN+ +       L EL P   
Sbjct: 427 DILCRAGLVDEAFKF-VQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKS 485

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            ++ LL  ++ +    D+V  V + + DRG+
Sbjct: 486 EDYVLLSNLFASNAEWDNVGEVRKEMGDRGV 516



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 204/368 (55%), Gaps = 19/368 (5%)

Query: 119 TNLLRKNKGISSKLLRLYATF---GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
           TN    N  ++SKL+  +A+    G    A ++ DQ+     +   WN++I GY E  + 
Sbjct: 3   TNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYT--WNTIIRGYLEGNDP 60

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
           E+AI +Y  + ++G++ D +T   V+KAC    +I  GE++H    + GF F+  +  AL
Sbjct: 61  EEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +++Y    +    + +FD +  +DL+ +N+++  Y H     +  ++   M+ +   P+ 
Sbjct: 121 LNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNG 180

Query: 296 VAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
           V   SIL+  S LR    G  VHG+V +  +E+D+ + N+LIVVYSK G +  A  +F  
Sbjct: 181 VTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQL 240

Query: 353 MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           MP ++VVSW S+I+ +S +   +EAL +F+QME + + PD +T + ++  C+ L S ++G
Sbjct: 241 MPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELG 300

Query: 410 ERLFSVMVEKYGI---SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           E + S  V K G+   SP + +   +++++ + G I+ A   I + ME E + V W  ++
Sbjct: 301 EWI-SQYVVKIGLLKESPAIAN--ALMDMHAKCGNINRA-CQIFDGME-EKTIVSWTIMI 355

Query: 467 YACYLHGN 474
               +HG+
Sbjct: 356 QGLAMHGH 363



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V++ +     T  S+L  C  L+A+  G  +H  +  NL+  +  + + L+ +Y+  G I
Sbjct: 172 VRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSI 231

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
            +A QVF  M  R   +  W SLI+GY++     +A+  + QME E + PD+ T   V+ 
Sbjct: 232 RDAVQVFQLMPMRNVVS--WTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVC 289

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            C+ L    +GE +    V+ G   +   + NAL+DM+AKCG+I +A  +FD +  K ++
Sbjct: 290 MCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIV 349

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           S+  M+ G   HG  + A   F  M   GF PD +   S+L+  S    G    GW    
Sbjct: 350 SWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACS--HAGLVDEGWRCFS 407

Query: 322 GVEWDLCIA------NSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA-HSKDHE 373
            +E D  I+        ++ +  + G +D+A     +MP K D++ W +++ A H++ + 
Sbjct: 408 SMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNI 467

Query: 374 AL 375
           +L
Sbjct: 468 SL 469


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 172/464 (37%), Positives = 250/464 (53%), Gaps = 20/464 (4%)

Query: 71  ALDSIIQDLESSVQ-NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
            L+  +  L   VQ N +T+ + T AS L +        HG+ + R    ++        
Sbjct: 274 GLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDV-----AFC 328

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+++YA+ G++ +A  VF +M  R A    W ++ISGY + G  + A+ +Y  ME   
Sbjct: 329 NSLIQMYASLGMMRQARTVFSRMDTRDAMT--WTAMISGYEKNGFPDKALEVYALMEVNN 386

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD  T    L ACA LG + VG K+H  A   GF     V NA+++MYAK   I KA 
Sbjct: 387 VSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAI 446

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL-- 307
            VF  +  KD++S++SM+ G+  +    EA   FR M+    D  P +++ I A A+   
Sbjct: 447 EVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA---DVKPNSVTFIAALAACAA 503

Query: 308 ---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              LR G ++H  VLR G+E++  + N+LI +Y K G+   A   F     KDVVSWN +
Sbjct: 504 TGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIM 563

Query: 365 IH---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I    AH     AL +F QM + G  PD +TFV+LL AC+  G V  G  LF  M EKY 
Sbjct: 564 IAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYS 623

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481
           I P ++HYACMV+L  RAG + EAY+ I E M       VWGALL  C +H +V +GE A
Sbjct: 624 IVPNLKHYACMVDLLSRAGQLTEAYNFINE-MPITPDAAVWGALLNGCRIHRHVELGELA 682

Query: 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           A+ +  LEP++     LL  +Y +A   D + RV + + ++GL+
Sbjct: 683 AKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLD 726



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/423 (33%), Positives = 224/423 (52%), Gaps = 21/423 (4%)

Query: 65  PKTKLQALDS------IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP 118
           P T+L+AL S       +  LESS +       + + +L   C   +AVE G++      
Sbjct: 59  PSTELRALCSHGQLAQALWLLESSAE---PPDEDAYVALFRLCEWRRAVEPGLRACAHAD 115

Query: 119 TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDA 178
                    + + +L +   FG    A +VF +M  R  F+  WN ++ GY + G  ++A
Sbjct: 116 DRHAWFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFS--WNVMVGGYGKSGLLDEA 173

Query: 179 IALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
           + LY +M   GV PD +TFP VL++C G+   R+G +VH   +RFGFG +  VLNAL+ M
Sbjct: 174 LDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTM 233

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
           YAKCGD++ AR VFD +   D IS+N+M+ G+  +G      ++F  M+ +   P+ + I
Sbjct: 234 YAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTI 293

Query: 299 SSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +S+   + LL       ++HG  ++RG   D+   NSLI +Y+  G + QA  +F  M  
Sbjct: 294 TSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDT 353

Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           +D ++W ++I  + K+    +AL  +  ME + V PD +T  S L+ACA LGS+ VG +L
Sbjct: 354 RDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKL 413

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA-CYL 471
             +   K  IS  V   A ++ +Y ++  ID+A    V K   E   V W +++   C+ 
Sbjct: 414 HELAESKGFISYIVVTNA-ILEMYAKSKRIDKAIE--VFKCMHEKDVVSWSSMIAGFCFN 470

Query: 472 HGN 474
           H N
Sbjct: 471 HRN 473


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/402 (34%), Positives = 222/402 (55%), Gaps = 21/402 (5%)

Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-----LGEYEDAIALYFQMEEEGVEPDQF 195
           LI   H      S+ T  +F WN+LI  + +      G     I+++ +M   GV+PD  
Sbjct: 7   LISSTHPTL-HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFH 65

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TFP +L++ A   L+ +G  VH   +RFG   D FV  +L+ MY+  G +  AR +F  +
Sbjct: 66  TFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVM 125

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD---PDPVAISSILANASLLRIGA 312
             +++IS++ M+ GY+  G   EA  +FR M + G +   P+   +S +LA     R+GA
Sbjct: 126 PERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG--RLGA 183

Query: 313 QVHG-----WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM-PQKDVVSWNSIIH 366
             HG     ++ + G+  D+ +  +LI +Y+K G +++A W+F ++ P KDV++W+++I 
Sbjct: 184 LEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMIS 243

Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
               H    E +  F +M   GV P+ +TF+++  AC H G V  G+     M E Y I 
Sbjct: 244 GLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSII 303

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P ++HY CMV+LYGRAG I EA++ +V+ M  E   +VWGALL    +HG++   E A +
Sbjct: 304 PTIQHYGCMVDLYGRAGRIKEAWN-VVKSMPMEPDVLVWGALLSGSRMHGDIETCELALK 362

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           KL ELEP N   + LL  +Y   GR +DV  V  ++   G++
Sbjct: 363 KLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIK 404



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 74  SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133
           ++ ++++    N +     T + +L  C +L A+EHG   H  I    +  +  + + L+
Sbjct: 151 ALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALI 210

Query: 134 RLYATFGLIDEAHQVFDQMS-NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
            +YA  G +++A  VF  +  N+   A  W+++ISG A  G  E+ + L+ +M  +GV P
Sbjct: 211 DMYAKCGSVEKATWVFSNLGPNKDVMA--WSAMISGLAMHGLAEECVGLFSKMINQGVRP 268

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKART 250
           +  TF  V  AC   GL+  G K +L  +   +     +     +VD+Y + G I +A  
Sbjct: 269 NAVTFLAVFCACVHGGLVSEG-KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWN 327

Query: 251 VFDRIG-NKDLISYNSMLTGYIHHG 274
           V   +    D++ + ++L+G   HG
Sbjct: 328 VVKSMPMEPDVLVWGALLSGSRMHG 352


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 235/441 (53%), Gaps = 15/441 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C + +       +H L   N  ++   + + L+  Y   G      QVFD+M
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R      W ++ISG  +   Y D++ L+ +M    VEP+  T+   L AC+GL  +R 
Sbjct: 121 LERNVIT--WTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALRE 178

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G ++H    + G   D  V +AL+DMY+KCG +     +F+  G  D +S   +L G+  
Sbjct: 179 GCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQ 238

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRRGVEWDLC 328
           +G   EA   F  M+  G + D   +S++L    A+ S L +G Q+H  V++R    +  
Sbjct: 239 NGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTS-LGLGQQIHSLVIKRSFGSNPF 297

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           + N LI +YSK G L+ +  +F  MP  + VSWNS+I A   H     AL  +++M   G
Sbjct: 298 VGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKG 357

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P  +TF+SLL AC+H+G V+ G      M E + ++PR+EHYAC+V++ GRAGL++EA
Sbjct: 358 VEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEA 417

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
            + I E +  +   +VW ALL AC +HG+  MG+ AA+ L    P+    + LL  IY +
Sbjct: 418 KTFI-EGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSS 476

Query: 506 AGRLDD----VERVERMLVDR 522
            GR  +    ++R++ M V +
Sbjct: 477 KGRWKERAKTIKRMKEMCVAK 497



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 207/405 (51%), Gaps = 34/405 (8%)

Query: 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV-EPD 193
           +YA  G++ +A ++FD+M  R   +  WN +ISG+ + G ++     + QM+  G    D
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVS--WNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLD 58

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
           Q T   +L AC    L  V + VH  AV  GF  +  V NAL+  Y KCG       VFD
Sbjct: 59  QATLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFD 118

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASL--LRI 310
            +  +++I++ ++++G +   L  ++  +F  M     +P+ +  +SS++A + L  LR 
Sbjct: 119 EMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALRE 178

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q+HG V + G++ D C+ ++L+ +YSK G +     +F+   Q D VS   I+   ++
Sbjct: 179 GCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQ 238

Query: 371 ---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRV 426
              + EA+ +F +M   G   D     ++L       S+ +G+++ S+++++ +G +P V
Sbjct: 239 NGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFV 298

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ--- 483
            +   ++N+Y + G ++++ + +  +M    S V W +++ A   HG+   G  A Q   
Sbjct: 299 GN--GLINMYSKCGDLEDS-TKVFSRMPCMNS-VSWNSMIAAFARHGD---GSRALQLYK 351

Query: 484 --KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526
             +L  +EP  +  F  L+    + G           LV++G+EF
Sbjct: 352 EMRLKGVEP-TDVTFLSLLHACSHVG-----------LVEKGMEF 384


>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
 gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
          Length = 750

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 237/453 (52%), Gaps = 14/453 (3%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           E  VQ GI  Q      +++      +++    L  L+P+    K+ G+ + ++  YA +
Sbjct: 163 EQLVQMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPS----KDVGMWTAVIAAYAKY 218

Query: 140 GLIDEAHQVFDQMSNRTA--FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF 197
           G   EA ++F+ M +RT       WN++IS   + G+ + ++ L+++M  +GV PD  T 
Sbjct: 219 GRWQEAIKLFETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMRRQGVRPDSLTL 278

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
              L  CA  G +  G  V      +G   +  V ++LV MY KCG +  AR VFD + +
Sbjct: 279 ATALDTCAASGNLHEGRMVAELVTVYGLQSNDLVNSSLVHMYGKCGSLDDARRVFDGMAH 338

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASLLRI--GAQV 314
           +  + ++ M+  Y  HG   EAF + + M       D  +  + L A  SLL +  G +V
Sbjct: 339 RGPVVWSKMIAAYSEHGHCSEAFVLLKEMESAKMVADASSCVAFLQACGSLLALEAGQEV 398

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---D 371
           HGW+  +G+E D+ + N+L+ +Y K G +++A  +FD+M +K+  SWN ++ A+      
Sbjct: 399 HGWITMKGLEQDVFVGNALVDMYGKCGSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYS 458

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            EA+  F QM ++GV P+  TF S+L AC H G ++ G      M   Y + P  EHYAC
Sbjct: 459 TEAIQVFLQMLQEGVKPNAKTFTSVLVACGHAGFIREGILHLVYMSSDYDVVPIAEHYAC 518

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
            V L GR+G + EA   + +  + EAS  VW AL+ AC +HG++  G +AA+ L E  P 
Sbjct: 519 AVGLLGRSGWVKEAEEYVKKLPDAEAS--VWDALVTACRIHGDLDRGRSAAESLLECSPH 576

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
              ++ ++  +Y    R DD  RV   +  +GL
Sbjct: 577 AARSYAVVAGLYDALARSDDAARVRETMTSKGL 609



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 183/425 (43%), Gaps = 71/425 (16%)

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
           E  AS++  C   + +  G ++H  I    L   + +++ L+ +Y   G + +A +VFD 
Sbjct: 12  EHLASIVRACGSSRDLIAGKRIHAHIADANLGNYRFLANLLVEMYGKCGSLHDARRVFDS 71

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV--------------------- 190
           + +   F+  WN L+  Y + G   +A   + +M  + V                     
Sbjct: 72  IHSPNIFS--WNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLITANAQSGYVLSARG 129

Query: 191 ------EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
                 + ++ T+  ++      G +   + +H   V+ G      +   +V MY  CG 
Sbjct: 130 VFEKMPQRNRVTWTAMVWCLVNAGDVIEAKIIHEQLVQMGIAEQLPLAKFIVQMYLSCGS 189

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM----------ILN----- 289
           + +AR +FD + +KD+  + +++  Y  +G   EA  +F  M          + N     
Sbjct: 190 LDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIKLFETMESRTGPYSVLVWNAIISA 249

Query: 290 --------------------GFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWD 326
                               G  PD + +++ L   A +  L  G  V   V   G++ +
Sbjct: 250 SFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAASGNLHEGRMVAELVTVYGLQSN 309

Query: 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMER 383
             + +SL+ +Y K G LD A  +FD M  +  V W+ +I A+S+     EA +  ++ME 
Sbjct: 310 DLVNSSLVHMYGKCGSLDDARRVFDGMAHRGPVVWSKMIAAYSEHGHCSEAFVLLKEMES 369

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
             ++ D  + V+ L AC  L +++ G+ +   +  K G+   V     +V++YG+ G ++
Sbjct: 370 AKMVADASSCVAFLQACGSLLALEAGQEVHGWITMK-GLEQDVFVGNALVDMYGKCGSVE 428

Query: 444 EAYSM 448
           EA+++
Sbjct: 429 EAWAV 433


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 238/445 (53%), Gaps = 10/445 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  + + T  S+L  C +      G  +H       L     +++ LL +Y+        
Sbjct: 506 GHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHST 565

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
           +Q+F  M+ +   +  W ++I+ Y   G ++    L  +M  +G++PD F    VL   A
Sbjct: 566 NQIFRNMAQKNVVS--WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA 623

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
           G   ++ G+ VH  A+R G      V NAL++MY  C ++ +AR VFD + NKD+IS+N+
Sbjct: 624 GDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNT 683

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++ GY  +    E+F +F  M+L  F P+ V ++ IL   A+ S L  G ++H + LRRG
Sbjct: 684 LIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRG 742

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
              D   +N+L+ +Y K G L  A  LFD + +K+++SW  +I     H    +A+  FE
Sbjct: 743 FLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFE 802

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           QM   GV PD  +F ++L AC H G    G + F+ M ++Y I P+++HY C+V+L    
Sbjct: 803 QMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHT 862

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G + EA+  I E M  E    +W +LL+ C +H +V + E  A ++F+LEP+N   + LL
Sbjct: 863 GNLKEAFEFI-ESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLL 921

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             IY  A R + V++++  +  RGL
Sbjct: 922 ANIYAEAERWEAVKKLKNKIGGRGL 946



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 216/446 (48%), Gaps = 31/446 (6%)

Query: 50  PKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEH 109
           P++ P+ +L++       +L     +   L     +G  V   ++ ++++ C + +++E 
Sbjct: 54  PRNPPSRVLSSDVNLRIQRLCQAGDLAAALRLLGSDG-GVGVRSYCAVVQLCGEERSLEA 112

Query: 110 GIKLHRLIPTNLLRKNKG------ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
             + H L+     R   G      +  +L+  Y   G +  A  VFD+M  R A    W 
Sbjct: 113 ARRAHALV-----RAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWT 167

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
           SL+S YA+ G++++ ++L+ QM+  GV PD      VLK  A LG I  GE +H    + 
Sbjct: 168 SLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKL 227

Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
           G G    V NAL+ +Y++CG +  A  VFD +  +D IS+NS ++GY  +G    A D+F
Sbjct: 228 GLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLF 287

Query: 284 RGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDL---------CIAN 331
             M   G +   V + S+L   + L    +G  VHG+ ++ G+ WDL          + +
Sbjct: 288 SKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGS 347

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
            L+ +Y K G +  A  +FD MP K +V  WN I+  ++K     E+L+ FEQM   G+ 
Sbjct: 348 KLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGIT 407

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           PD      LL     L   + G      +V K G   +      +++ Y ++ +ID A  
Sbjct: 408 PDEHALSCLLKCITCLSCARDGLVAHGYLV-KLGFGTQCAVCNALISFYAKSNMIDNAV- 465

Query: 448 MIVEKMEFEASPVVWGALLYACYLHG 473
           ++ ++M  + + + W +++  C  +G
Sbjct: 466 LVFDRMPHQDT-ISWNSVISGCTSNG 490



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 195/417 (46%), Gaps = 58/417 (13%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G++      + +L+    L ++  G  +H L+    L +   +++ L+ LY+  G +++A
Sbjct: 193 GVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDA 252

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            QVFD M  R A +  WNS ISGY   G ++ A+ L+ +M  EG E    T   VL ACA
Sbjct: 253 MQVFDSMHARDAIS--WNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACA 310

Query: 206 GLGLIRVGEKVHLDAVRFGF---------GFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
            LG   VG+ VH  +++ G          G D  + + LV MY KCGD+  AR VFD + 
Sbjct: 311 ELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMP 370

Query: 257 NKDLIS-YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGA 312
           +K  +  +N ++ GY       E+  +F  M   G  PD  A+S +L   + L   R G 
Sbjct: 371 SKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGL 430

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK-- 370
             HG++++ G      + N+LI  Y+K   +D A  +FD MP +D +SWNS+I   +   
Sbjct: 431 VAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNG 490

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACA-----------HLGSVKVG--------- 409
            + EA+  F +M   G   D  T +S+L ACA           H  SVK G         
Sbjct: 491 LNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLAN 550

Query: 410 ---------------ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451
                           ++F  M +K  +S     +  M+  Y RAGL D+   ++ E
Sbjct: 551 ALLDMYSNCSDWHSTNQIFRNMAQKNVVS-----WTAMITSYTRAGLFDKVAGLLQE 602



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 176/343 (51%), Gaps = 18/343 (5%)

Query: 86  GITVQTETFASLLETCYQLK-----AVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLY 136
           G  + + T  S+L  C +L       V HG  +   +  +L     GI     SKL+ +Y
Sbjct: 294 GTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMY 353

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
              G +  A +VFD M ++      WN ++ GYA+  E+E+++ L+ QM E G+ PD+  
Sbjct: 354 VKCGDMGSARRVFDAMPSK-GNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHA 412

Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
              +LK    L   R G   H   V+ GFG    V NAL+  YAK   I  A  VFDR+ 
Sbjct: 413 LSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMP 472

Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQ 313
           ++D IS+NS+++G   +GL  EA ++F  M + G + D   + S+L   A +    +G  
Sbjct: 473 HQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRV 532

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           VHG+ ++ G+  +  +AN+L+ +YS          +F +M QK+VVSW ++I ++++   
Sbjct: 533 VHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGL 592

Query: 371 -DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
            D  A +  ++M  DG+ PD     S+L   A   S+K G+ +
Sbjct: 593 FDKVAGL-LQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSV 634



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 173/378 (45%), Gaps = 42/378 (11%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK 126
           T+    D +   L+  V +GI        S+L      ++++ G  +H     N + K  
Sbjct: 588 TRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLL 647

Query: 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQME 186
            +++ L+ +Y     ++EA  VFD ++N+   +  WN+LI GY+      ++ +L+  M 
Sbjct: 648 PVANALMEMYVNCRNMEEARLVFDHVTNKDIIS--WNTLIGGYSRNNFANESFSLFSDML 705

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246
            +  +P+  T   +L A A +  +  G ++H  A+R GF  D +  NALVDMY KCG ++
Sbjct: 706 LQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALL 764

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306
            AR +FDR+  K+LIS+  M+ GY  HG   +A  +F  M  +G +PD  + S+IL   +
Sbjct: 765 VARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAIL--YA 822

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
               G    GW             N++   Y  + KL     + D +             
Sbjct: 823 CCHSGLTAEGWKF----------FNAMRKEYKIEPKLKHYTCIVDLL------------- 859

Query: 367 AHSKD-HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE----RLFSVMVEKYG 421
           +H+ +  EA  + E M    + PD   +VSLL  C     VK+ E    R+F +  E  G
Sbjct: 860 SHTGNLKEAFEFIESMP---IEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTG 916

Query: 422 ISPRVEHYACMVNLYGRA 439
                 +Y  + N+Y  A
Sbjct: 917 ------YYVLLANIYAEA 928


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 241/450 (53%), Gaps = 19/450 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL- 141
           +++G      T +S++  C +L +V  G++LH L        +  +S  L+ +YA   + 
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIE 305

Query: 142 --IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF-QMEEEGVEPDQFTFP 198
             +D A++VF++M  R      W +LISGY + G  E+ + + F +M  E ++P+  T+ 
Sbjct: 306 QAMDYANKVFERM--RKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYS 363

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            +LKACA +     G +VH   ++        V NALV MYA+ G + +AR VF+++  +
Sbjct: 364 SILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER 423

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANASLLRIGAQVHGW 317
            +IS        I  G      D   G +  G      A + S  A+  +L  G Q+H  
Sbjct: 424 SMISC-------ITEGRDA-PLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAM 475

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            L+ G   D  ++NSL+ +YS+ G L+ AC  F+ +  ++V+SW S+I     H     A
Sbjct: 476 TLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERA 535

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L  F  M   GV P+ +T++++LSAC+H+G V+ G+  F  M   +G+ PR+EHYACMV+
Sbjct: 536 LSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVD 595

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L  R+GL+ EA   I E M  +A  +VW  LL AC  H N+ +GE AA+ + ELEP +  
Sbjct: 596 LLARSGLVKEALEFINE-MPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPA 654

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
            + LL  +Y +AG  D+V R+   + D  L
Sbjct: 655 PYVLLSNLYADAGLWDEVARIRSAMRDNNL 684



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 186/349 (53%), Gaps = 15/349 (4%)

Query: 110 GIKLHR-LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
           G  LHR L+  +LL ++  +++ LL LY+  G +  A  VFD M         W ++ S 
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDI-VSWTAMASC 125

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFG-FG 226
            A  G   +++ L  +M E G+ P+ +T   V  AC    L   VG  V     + G +G
Sbjct: 126 LARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWG 185

Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
            D  V +AL+DM A+ GD+  AR VFD +  K ++ +  +++ Y+      EA +IF   
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDF 245

Query: 287 ILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---D 340
           + +GF+PD   +SS+++  + L   R+G Q+H   LR G   D C++  L+ +Y+K   +
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIE 305

Query: 341 GKLDQACWLFDHMPQKDVVSWNSIIHAH----SKDHEALIYFEQMERDGVLPDHLTFVSL 396
             +D A  +F+ M + DV+SW ++I  +     ++++ ++ F +M  + + P+H+T+ S+
Sbjct: 306 QAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSI 365

Query: 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           L ACA++     G ++ + +++    +      A +V++Y  +G ++EA
Sbjct: 366 LKACANISDHDSGRQVHAHVIKSNQAAAHTVGNA-LVSMYAESGCMEEA 413



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 188/398 (47%), Gaps = 31/398 (7%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLI------------PTNLLRKNKGISSKLLRLYATFGLI 142
           + LL   Y L AV H    H L                L   +  + S L+ + A  G +
Sbjct: 145 SGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDL 204

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD +  +T     W  LIS Y +    E+A+ ++    E+G EPD++T   ++ 
Sbjct: 205 ASARKVFDGLIEKTVVV--WTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS 262

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG---DIVKARTVFDRIGNKD 259
           AC  LG +R+G ++H  A+R GF  D  V   LVDMYAK      +  A  VF+R+   D
Sbjct: 263 ACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKND 322

Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSIL---ANASLLRIGAQVH 315
           +IS+ ++++GY+  G+      +  G +LN    P+ +  SSIL   AN S    G QVH
Sbjct: 323 VISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVH 382

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEAL 375
             V++        + N+L+ +Y++ G +++A  +F+ + ++ ++S  +       DH   
Sbjct: 383 AHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDH--- 439

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
               ++ R  +     TF SL+SA A +G +  G++L + M  K G          +V++
Sbjct: 440 ----RIGRMDMGISSSTFASLISAAASVGMLTKGQQLHA-MTLKAGFGSDRFVSNSLVSM 494

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           Y R G +++A     E  +     + W +++     HG
Sbjct: 495 YSRCGYLEDACRSFNELKDRNV--ISWTSMISGLAKHG 530



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 141/273 (51%), Gaps = 18/273 (6%)

Query: 208 GLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRI-GNKDLISYNS 265
           G +R+G  +H   +R      D  V N+L+ +Y++CG +  AR VFD + G +D++S+ +
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA----SLLRIGAQVHGWVLRR 321
           M +    +G   E+  +   M+ +G  P+   + ++ A+A     L  +   V   ++ +
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAV-AHACFPHELYCLVGGVVLGLVHK 180

Query: 322 GVEW--DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
              W  D+ + ++LI + +++G L  A  +FD + +K VV W  +I  + +     EA+ 
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F     DG  PD  T  S++SAC  LGSV++G +L S+ + + G +        +V++Y
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLAL-RMGFASDACVSCGLVDMY 299

Query: 437 GRAGLIDEAY---SMIVEKMEFEASPVVWGALL 466
            ++  I++A    + + E+M  +   + W AL+
Sbjct: 300 AKSN-IEQAMDYANKVFERMR-KNDVISWTALI 330


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 231/420 (55%), Gaps = 11/420 (2%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           K+H ++      +   + ++LL      G +  A QVFD+M     F   WN+L  GY  
Sbjct: 29  KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFL--WNTLFKGYVR 86

Query: 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231
                +++ LY +M + GV PD+FT+P V+KA + LG    G  +H   V++GFG  G V
Sbjct: 87  NQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIV 146

Query: 232 LNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
              LV MY K G++  A  +F+ +  KDL+++N+ L   +  G    A + F  M  +  
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAV 206

Query: 292 DPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
             D   + S+L+       L IG +++    +  ++ ++ + N+ + ++ K G  + A  
Sbjct: 207 QFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARV 266

Query: 349 LFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           LF+ M Q++VVSW+++I  ++ +    EAL  F  M+ +G+ P+++TF+ +LSAC+H G 
Sbjct: 267 LFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGL 326

Query: 406 VKVGERLFSVMVEK--YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
           V  G+R FS+MV+     + PR EHYACMV+L GR+GL++EAY  I +KM  E    +WG
Sbjct: 327 VNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFI-KKMPVEPDTGIWG 385

Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           ALL AC +H ++ +G+  A  L E  PD      LL  IY  AG+ D V++V   +   G
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +K+H   +R GF     +L  L++     GD+  AR VFD +    +  +N++  GY+ +
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIA 330
            L  E+  +++ M   G  PD      ++   S L     G  +H  V++ G      +A
Sbjct: 88  QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVL 387
             L+++Y K G+L  A +LF+ M  KD+V+WN+ +    +      AL YF +M  D V 
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
            D  T VS+LSAC  LGS+++GE ++     K  I   +      ++++ + G   EA  
Sbjct: 208 FDSFTVVSMLSACGQLGSLEIGEEIYD-RARKEEIDCNIIVENARLDMHLKCGNT-EAAR 265

Query: 448 MIVEKMEFEASPVVWGALLYACYLHGN 474
           ++ E+M+ + + V W  ++    ++G+
Sbjct: 266 VLFEEMK-QRNVVSWSTMIVGYAMNGD 291


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 242/452 (53%), Gaps = 46/452 (10%)

Query: 116 LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA---EL 172
           +I T L R N  ++ K +   +  G +  A+ VF        +    N++I   +   E 
Sbjct: 38  MIITGLNRDNLNVA-KFIEACSNAGHLRYAYSVFTHQPFPNTYLH--NTMIRALSLVDER 94

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
             +  AI +Y +      +PD FTFP VLK    +  +  G +VH  AV FGF     V+
Sbjct: 95  NAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVV 154

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDL-------------------------------- 260
             L+ MY+ CG +  AR VFD +  +D+                                
Sbjct: 155 TGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRN 214

Query: 261 -ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHG 316
            +S+  +++GY   G   EA ++F+ M++   DPD V + ++L   A+   L +G ++  
Sbjct: 215 AVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICS 274

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
           +V  RG+   + + N++I +Y+K G + +A  +F+ + +++VV+W +II     H    E
Sbjct: 275 YVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAE 334

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL+ F++M + GV P+ +TF+++LSAC+H+G V +G R F+ M  KYGI+P +EHY CM+
Sbjct: 335 ALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMI 394

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +L GRAG + EA   +++ M FE++  +WG+LL A  +H ++ +GE A  +L +LEP+N 
Sbjct: 395 DLLGRAGKLREAEE-VIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNS 453

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            N+ LL  +Y N GR D+   + +M+   G++
Sbjct: 454 GNYMLLANLYSNLGRWDESRMMRKMMKGIGVK 485



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  ++L  C  L ++E G ++   +    + +   +++ ++ +YA  G I +A +VF+ +
Sbjct: 252 TLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESV 311

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           + R      W ++I+G A  G   +A+ ++ +M + GV+P+  TF  +L AC+ +G + +
Sbjct: 312 NERNVVT--WTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDL 369

Query: 213 GEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVF 252
           G +   +++R  +G +  +     ++D+  + G + +A  V 
Sbjct: 370 GNRF-FNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVI 410



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 19/235 (8%)

Query: 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
           ++S+  + + L+   Q H +++  G+  D       I   S  G L  A  +F H P  +
Sbjct: 18  VTSLKIHGTNLKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPN 77

Query: 358 VVSWNSIIHAHSKDHE------ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
               N++I A S   E      A+  + +       PD  TF  +L     +  V  G +
Sbjct: 78  TYLHNTMIRALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQ 137

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
           +    V  +G    V     ++ +Y   G + +A  +  E    + +  VW ALL     
Sbjct: 138 VHGQAV-VFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVN--VWNALLAG--- 191

Query: 472 HGNVCMGET-AAQKLFELEP---DNEHNFELLIKIYGNAGRLDD-VERVERMLVD 521
           +G V  GE   A+ L E+ P    N  ++  +I  Y  +GR  + +E  +RML++
Sbjct: 192 YGKV--GEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLME 244


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 231/398 (58%), Gaps = 21/398 (5%)

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           YA  G IDEA Q+FD+   +  F   W +++SGY +    E+A  L+ +M E     ++ 
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFT--WTAMVSGYIQNRMVEEARELFDKMPER----NEV 313

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGF--GFDGFVLNALVDMYAKCGDIVKARTVFD 253
           ++  +L      G ++ GE++ +    F      +    N ++  YA+CG I +A+ +FD
Sbjct: 314 SWNAMLA-----GYVQ-GERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFD 367

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRI 310
           ++  +D +S+ +M+ GY   G   EA  +F  M   G   +  + SS L   A+   L +
Sbjct: 368 KMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALEL 427

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK 370
           G Q+HG +++ G E    + N+L+++Y K G +++A  LF  M  KD+VSWN++I  +S+
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 487

Query: 371 ---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
                 AL +FE M+R+G+ PD  T V++LSAC+H G V  G + F  M + YG+ P  +
Sbjct: 488 HGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           HYACMV+L GRAGL+++A++++ + M FE    +WG LL A  +HGN  + ETAA K+F 
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLM-KNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 606

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           +EP+N   + LL  +Y ++GR  DV ++   + D+G++
Sbjct: 607 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           ++ ++L    Q + +E   +L  ++P     +N    + ++  YA  G I EA  +FD+M
Sbjct: 314 SWNAMLAGYVQGERMEMAKELFDVMPC----RNVSTWNTMITGYAQCGKISEAKNLFDKM 369

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  W ++I+GY++ G   +A+ L+ QME EG   ++ +F   L  CA +  + +
Sbjct: 370 PKRDPVS--WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALEL 427

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   V+ G+    FV NAL+ MY KCG I +A  +F  +  KD++S+N+M+ GY  
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 487

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQ-VHGWVLRRGVEWDLC 328
           HG    A   F  M   G  PD    VA+ S  ++  L+  G Q  +      GV  +  
Sbjct: 488 HGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
               ++ +  + G L+ A  L  +MP + D   W +++ A
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA 587



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 187/414 (45%), Gaps = 50/414 (12%)

Query: 67  TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP------TN 120
            K +AL    Q L  +  NG+  +              +A +  I+  +  P      ++
Sbjct: 4   NKFRALSRRAQQLHYTSLNGLKRRCNNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSD 63

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
           +   N  ISS     Y   G  +EA +VF +M   ++ ++  N +ISGY   GE+E A  
Sbjct: 64  IKEWNVAISS-----YMRTGRCNEALRVFKRMPRWSSVSY--NGMISGYLRNGEFELARK 116

Query: 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF----DGFVLNALV 236
           L+ +M E     D  ++  ++K     G +R     +L   R  F      D    N ++
Sbjct: 117 LFDEMPER----DLVSWNVMIK-----GYVR---NRNLGKARELFEIMPERDVCSWNTML 164

Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
             YA+ G +  AR+VFDR+  K+ +S+N++L+ Y+ +  + EA  +F+            
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
            +   +    ++          +R  V W     N++I  Y++ GK+D+A  LFD  P +
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSW-----NTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 357 DVVSWNSIIHAHSKDH---EALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412
           DV +W +++  + ++    EA   F++M ER+ V     ++ ++L+       +++ + L
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAGYVQGERMEMAKEL 334

Query: 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           F VM  +      V  +  M+  Y + G I EA ++  +KM  +  PV W A++
Sbjct: 335 FDVMPCR-----NVSTWNTMITGYAQCGKISEAKNLF-DKMP-KRDPVSWAAMI 381



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 136/297 (45%), Gaps = 54/297 (18%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N  +  Y + G   +A  VF R+     +SYN M++GY+ +G     F++ R +    FD
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNG----EFELARKL----FD 119

Query: 293 PDPVAISSILANASLLRIGAQVHGWVLRRGV-----------EWDLCIANSLIVVYSKDG 341
             P           L+     + G+V  R +           E D+C  N+++  Y+++G
Sbjct: 120 EMP--------ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNG 171

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLS 398
            +D A  +FD MP+K+ VSWN+++ A+   SK  EA + F+  E   +    +++  LL 
Sbjct: 172 CVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLG 227

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
                  +    + F  M  +  +S     +  ++  Y ++G IDEA  +      F+ S
Sbjct: 228 GFVKKKKIVEARQFFDSMNVRDVVS-----WNTIITGYAQSGKIDEARQL------FDES 276

Query: 459 PV----VWGALLYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLD 510
           PV     W A++ + Y+   +      A++LF+  P+ NE ++  ++  Y    R++
Sbjct: 277 PVQDVFTWTAMV-SGYIQNRMV---EEARELFDKMPERNEVSWNAMLAGYVQGERME 329



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKT--KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ 103
           F   PK  P         + ++    +AL   +Q +E   + G  +   +F+S L TC  
Sbjct: 366 FDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ-ME---REGGRLNRSSFSSALSTCAD 421

Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
           + A+E G +LH  +          + + LL +Y   G I+EA+ +F +M+ +   +  WN
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS--WN 479

Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
           ++I+GY+  G  E A+  +  M+ EG++PD  T   VL AC+  GL+  G +
Sbjct: 480 TMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 138/388 (35%), Positives = 217/388 (55%), Gaps = 9/388 (2%)

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D   QVFD+M  R      W ++ISG A+   YED + L+ QM    V P+  T+   L 
Sbjct: 40  DTGRQVFDEMLERNVVT--WTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALM 97

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC+GL  +  G K+H    + G   D  + +AL+D+Y+KCG + +A  +F+     D +S
Sbjct: 98  ACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVS 157

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
              +L  ++ +GL  EA  IF  M+  G + DP  +S+IL      + L +G Q+H  ++
Sbjct: 158 LTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLGKQIHSLII 217

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALI 376
           ++    +L ++N LI +YSK G L  +  +F  M QK+ VSWNS+I A+++      AL 
Sbjct: 218 KKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQ 277

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
           +++ M  +G+    +TF+SLL AC+H G V+ G      M   +G+SPR EHYAC+V++ 
Sbjct: 278 FYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVDML 337

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           GRAGL+ EA   I E +      +VW ALL AC +HG+  MG+ AA +LF   PD+   +
Sbjct: 338 GRAGLLKEAKKFI-EGLPENPGVLVWQALLGACSIHGDSEMGKYAANQLFLATPDSPAPY 396

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            L+  IY + G+  +  R  + + + G+
Sbjct: 397 VLMANIYSSEGKWKERARSIKKMKEMGV 424



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 144/298 (48%), Gaps = 21/298 (7%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +  ++  + T+ S L  C  L+A+  G K+H L+    ++ +  I S L+ LY+  G ++
Sbjct: 82  RGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLE 141

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           EA ++F+        +     ++  + + G  E+AI ++ +M + G+E D      +L  
Sbjct: 142 EAWEIFESAEELDDVSL--TVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAIL-G 198

Query: 204 CAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
             G+G  + +G+++H   ++  F  + FV N L++MY+KCGD+  +  VF  +  K+ +S
Sbjct: 199 VFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVS 258

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQV----- 314
           +NS++  Y  +G    A   +  M + G     V   S+L   ++A L+  G +      
Sbjct: 259 WNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMT 318

Query: 315 --HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHAHS 369
             HG   R   E   C+ + L     + G L +A    + +P+   V+ W +++ A S
Sbjct: 319 RDHGLSPRS--EHYACVVDML----GRAGLLKEAKKFIEGLPENPGVLVWQALLGACS 370



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D    NA++  + +  D    R VFD +  ++++++ ++++G   +    +   +F  M 
Sbjct: 22  DTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMR 81

Query: 288 LNGFDPDPVA-ISSILANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
                P+ +  +S+++A + L  L  G ++HG + + G++ DLCI ++L+ +YSK G L+
Sbjct: 82  RGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLE 141

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
           +A  +F+   + D VS   I+ A  +   + EA+  F +M + G+  D     ++L    
Sbjct: 142 EAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFG 201

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
              S+ +G+++ S++++K  I         ++N+Y + G + ++  +  E    + + V 
Sbjct: 202 VGTSLTLGKQIHSLIIKKNFIQNLFVSNG-LINMYSKCGDLYDSLQVFHEMT--QKNSVS 258

Query: 462 WGALLYACYLHGN 474
           W +++ A   +G+
Sbjct: 259 WNSVIAAYARYGD 271



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 35/155 (22%)

Query: 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD------------------------ 371
           +YSK GKL  A  LFDHMP KD VSWN+II    ++                        
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAV 60

Query: 372 ----------HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
                      + L  F+QM R  V P+ LT++S L AC+ L ++  G ++  ++  K G
Sbjct: 61  ISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLW-KLG 119

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456
           +   +   + +++LY + G ++EA+ +     E +
Sbjct: 120 MQSDLCIESALMDLYSKCGSLEEAWEIFESAEELD 154


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 237/439 (53%), Gaps = 9/439 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
              S+L+    L +   G  +H      L      +   LL +YA  G I++A  VF+ +
Sbjct: 253 VLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEII 312

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +       W+ LIS YA+  + E A  ++ +M    V P++F+   VL+ACA +  + +
Sbjct: 313 PHDDVIL--WSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDL 370

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   ++ G+  + FV NAL+D+YAKC ++  +  +F  + + + +S+N+++ GY  
Sbjct: 371 GQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQ 430

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G   +A  +F+ M         V  SS+L   AN + ++   Q+H  + +     D  +
Sbjct: 431 SGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIV 490

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            NSLI  Y+K G +  A  +F+ + Q DVVSWN+II     H +  +AL  F +M +   
Sbjct: 491 CNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDT 550

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV+LLS C   G V  G  LF+ M   + I P ++HY C+V L GRAG +++A 
Sbjct: 551 KPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDAL 610

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + +    SP+VW ALL +C +H NV +G+ +A+K+ E+EP +E  + LL  +Y  A
Sbjct: 611 KFIGD-IPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAA 669

Query: 507 GRLDDVERVERMLVDRGLE 525
           G LD V  + + + + G++
Sbjct: 670 GILDQVALLRKSMRNIGVK 688



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 205/396 (51%), Gaps = 22/396 (5%)

Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
           +N  + S L+  Y+  G +  A  VFD +  + A    W +++S Y+E    EDA+  + 
Sbjct: 183 RNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVT--WTAMVSCYSENDIPEDALNTFS 240

Query: 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           +M   G +P+ F    VLKA   L    +G+ +H  AV+     +  V  AL+DMYAKCG
Sbjct: 241 KMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCG 300

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL- 302
            I  ARTVF+ I + D+I ++ +++ Y       +AF++F  M+ +   P+  ++S +L 
Sbjct: 301 YIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQ 360

Query: 303 --ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
             AN + L +G Q+H  V++ G E +L + N+L+ VY+K   ++ +  +F  +   + VS
Sbjct: 361 ACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVS 420

Query: 361 WNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
           WN+II  + +     +AL  F++M    VL   +TF S+L ACA+  S+K   ++ S ++
Sbjct: 421 WNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHS-LI 479

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           EK   +        +++ Y + G I +A  +    ++ +   V W A++    LHG    
Sbjct: 480 EKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDV--VSWNAIISGYALHGRA-- 535

Query: 478 GETAAQKLF------ELEPDNEHNFELLIKIYGNAG 507
             T A +LF      + +P N+  F  L+ + G+ G
Sbjct: 536 --TDALELFNRMNKSDTKP-NDVTFVALLSVCGSTG 568



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 192/369 (52%), Gaps = 12/369 (3%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFAS--LLETCYQLKAVEHGIKLHRLI 117
           +Q   P  +  A ++ +Q L+  + +    + +++A   LL+ C        G  +H  +
Sbjct: 14  SQPNVPLRRNLAANAALQWLDDELASLALPKLDSYACARLLQRCIARGDARAGRAVHARV 73

Query: 118 PT--NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175
                + + +   ++ LL LYA  G +  A ++FD M  R   +F   +L+ GYA  G +
Sbjct: 74  VQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFV--TLVQGYALRGGF 131

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
           E+A  L+ +++ EG E + F    +LK    +    +   +H  A + G   + FV ++L
Sbjct: 132 EEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSL 191

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +D Y+ CG +  AR VFD I  KD +++ +M++ Y  + +  +A + F  M + G  P+P
Sbjct: 192 IDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNP 251

Query: 296 VAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352
             ++S+L  A  L    +G  +HG  ++   + +  +  +L+ +Y+K G ++ A  +F+ 
Sbjct: 252 FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEI 311

Query: 353 MPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409
           +P  DV+ W+ +I  +++ +   +A   F +M R  V+P+  +   +L ACA++  + +G
Sbjct: 312 IPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLG 371

Query: 410 ERLFSVMVE 418
           +++ +++++
Sbjct: 372 QQIHNLVIK 380



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 174/390 (44%), Gaps = 65/390 (16%)

Query: 70  QALDSIIQDLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI 128
           QA +  ++ + SSV     V  E + + +L+ C  +  ++ G ++H L+          +
Sbjct: 335 QAFEMFLRMMRSSV-----VPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFV 389

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
            + L+ +YA    ++ + ++F  +  R A    WN++I GY + G  EDA++++ +M   
Sbjct: 390 GNALMDVYAKCRNMENSLEIFRSL--RDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAA 447

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            V   Q TF  VL+ACA    I+   ++H    +  F  D  V N+L+D YAKCG I  A
Sbjct: 448 HVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDA 507

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
             VF+ I   D++S+N++++GY  HG   +A ++F  M  +   P+ V   ++L+     
Sbjct: 508 LKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLS----- 562

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
                                      V    G ++Q   LF+ M     +         
Sbjct: 563 ---------------------------VCGSTGLVNQGLSLFNSMTMDHRIK-------P 588

Query: 369 SKDHEALIYFEQMERDGVLPDHLTFV-------------SLLSACAHLGSVKVGERLFSV 415
           S DH   I    + R G L D L F+             +LLS+C    +V +G+     
Sbjct: 589 SMDHYTCI-VRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEK 647

Query: 416 MVEKYGISPRVE-HYACMVNLYGRAGLIDE 444
           ++E   I P+ E  Y  + N+Y  AG++D+
Sbjct: 648 VLE---IEPQDETTYVLLSNMYAAAGILDQ 674


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 241/442 (54%), Gaps = 19/442 (4%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +NG+     +  S L +C  L  +  G ++H       L  +  +S+ LL LYA    I+
Sbjct: 550 RNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSIN 609

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE----DAIALYFQMEEEGVEPDQFTFPR 199
           E  +VF QM      +  WNS I     L +YE     A+  + +M + G  P++ TF  
Sbjct: 610 ECQKVFFQMPEYDQVS--WNSFIGA---LAKYEASVLQALKYFLEMMQAGWRPNRVTFIN 664

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK- 258
           +L A +   ++ +G ++H   +++    D  + NAL+  Y KC  +     +F R+  + 
Sbjct: 665 ILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERR 724

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           D +S+NSM++GY+H G+L +A D+   M+  G   D    +++L   A+ + L  G +VH
Sbjct: 725 DEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVH 784

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDH 372
              +R  +E D+ + ++L+ +Y+K GK+D A   F+ MP +++ SWNS+I     H    
Sbjct: 785 ACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQ 844

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           +AL  F +M++ G  PDH+TFV +LSAC+H+G V  G + F  M E YG+SPR+EH++CM
Sbjct: 845 KALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCM 904

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG--NVCMGETAAQKLFELEP 490
           V+L GRAG + +    I + M  + + ++W  +L AC      N  +G+ AA+ L ELEP
Sbjct: 905 VDLLGRAGDVKKIEDFI-KTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEP 963

Query: 491 DNEHNFELLIKIYGNAGRLDDV 512
            N  N+ LL  ++   G  +DV
Sbjct: 964 QNAVNYVLLSNMHAAGGNWEDV 985



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 205/425 (48%), Gaps = 28/425 (6%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHR-----LIPTNLLRKNKGISSKLLRLYATFGL 141
           + + +E+   LL T  +   ++ G +  +     L  + L+     I + L+ +Y     
Sbjct: 447 VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTA 506

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           ID A  VF  M ++   +  WNS+ISG      +E+A++ +  M+  G+ P  F+    L
Sbjct: 507 IDNACSVFQLMPSKDTVS--WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTL 564

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            +C+ LG + +G ++H +  ++G   D  V NAL+ +YA+   I + + VF ++   D +
Sbjct: 565 SSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQV 624

Query: 262 SYNSMLTGYI-HHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGW 317
           S+NS +     +   +++A   F  M+  G+ P+ V   +ILA     S+L +G Q+H  
Sbjct: 625 SWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHAL 684

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSKD---HE 373
           +L+  V  D  I N+L+  Y K  +++    +F  M + +D VSWNS+I  +      H+
Sbjct: 685 ILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHK 744

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           A+     M + G   D  TF ++LSACA + +++ G  + +  V +  +   V   + +V
Sbjct: 745 AMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAV-RACLESDVVVGSALV 803

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPV----VWGALL--YACYLHGNVCMGETAAQKLFE 487
           ++Y + G ID A         FE  PV     W +++  YA + HG   +      K   
Sbjct: 804 DMYAKCGKIDYASRF------FELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHG 857

Query: 488 LEPDN 492
             PD+
Sbjct: 858 QSPDH 862



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 124/258 (48%), Gaps = 5/258 (1%)

Query: 49  YPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVE 108
           Y + S    +     +  + LQAL   ++ +    Q G      TF ++L        + 
Sbjct: 621 YDQVSWNSFIGALAKYEASVLQALKYFLEMM----QAGWRPNRVTFINILAAVSSFSVLG 676

Query: 109 HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168
            G ++H LI    +  +  I + LL  Y     +++   +F +MS R      WNS+ISG
Sbjct: 677 LGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRD-EVSWNSMISG 735

Query: 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD 228
           Y   G    A+ L + M + G + D FTF  VL ACA +  +  G +VH  AVR     D
Sbjct: 736 YLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESD 795

Query: 229 GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288
             V +ALVDMYAKCG I  A   F+ +  +++ S+NSM++GY  HG   +A  IF  M  
Sbjct: 796 VVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQ 855

Query: 289 NGFDPDPVAISSILANAS 306
           +G  PD V    +L+  S
Sbjct: 856 HGQSPDHVTFVGVLSACS 873



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 164/318 (51%), Gaps = 23/318 (7%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           +HL   + GF  D F  N L+++Y + G++V AR +FD +  K+L+S++ +++GY  + +
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSIL-----ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
             EA  +F+G+I +G  P+  A+ S L       ++ +++G Q+H ++ +     D+ ++
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 331 NSLIVVYSK-DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE---QMERDGV 386
           N L+ +YS   G +D A  +FD +  ++ V+WNSII  + +  +A+  F+    M+ +GV
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 387 ----LPDHLTFVSLLSACAHLGSVKVGERLFSVM---VEKYGISPRVEHYACMVNLYGRA 439
                P+  T  SL++A   L     G  L   M   +EK G    +   + +VN + R 
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLAD--CGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARY 399

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           GL+D A  MI ++M    +  + G ++     H     GE AA+   E++   E N E L
Sbjct: 400 GLMDCA-KMIFKQMYDRNAVTMNGLMVGLARQH----QGEEAAKVFKEMKDLVEINSESL 454

Query: 500 IKIYGNAGRLDDVERVER 517
           + +        +++  +R
Sbjct: 455 VVLLSTFTEFSNLKEGKR 472



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 174/356 (48%), Gaps = 24/356 (6%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+ +Y   G +  A ++FD+M  +   +  W+ LISGY +    ++A +L+  +   G
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVS--WSCLISGYTQNRMPDEACSLFKGVISSG 236

Query: 190 VEPDQFTFPRVLKACAGLGL--IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC-GDIV 246
           + P+ F     L+AC   G   I++G ++H    +     D  + N L+ MY+ C G I 
Sbjct: 237 LLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSID 296

Query: 247 KARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD----PDPVAISSIL 302
            A  VFD I  ++ +++NS+++ Y   G  V AF +F  M + G +    P+   + S++
Sbjct: 297 DAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLV 356

Query: 303 -ANASLLRIG----AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD 357
            A  SL   G     Q+   + + G   DL + ++L+  +++ G +D A  +F  M  ++
Sbjct: 357 TAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRN 416

Query: 358 VVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER--- 411
            V+ N ++   ++ H   EA   F++M +D V  +  + V LLS      ++K G+R   
Sbjct: 417 AVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQ 475

Query: 412 -LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            + + +     +  R+     +VN+YG+   ID A S  V ++      V W +++
Sbjct: 476 EVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACS--VFQLMPSKDTVSWNSMI 529


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 246/452 (54%), Gaps = 21/452 (4%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK----NKGISSKLLRLYATFGL 141
           G     +TF S+L     + A    +KL R +   +LR     +  + + L+ +Y   G 
Sbjct: 255 GFEAGPQTFGSVLS----VAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGK 310

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
           ID A ++F++ S++      W ++ISG  + G  + A+A++ QM + GV+P   T   V+
Sbjct: 311 IDIAFRMFERSSDKDVVL--WTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVI 368

Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
            ACA LG   +G  +    +R     D    N+LV MYAKCG + ++  VFD +  +DL+
Sbjct: 369 TACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLV 428

Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWV 318
           S+N+M+TGY  +G + EA  +F  M  +   PD + I S+L   A+   L +G  +H +V
Sbjct: 429 SWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFV 488

Query: 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEAL 375
           +R G+   + +  SL+ +Y K G LD A   F+ MP  D+VSW++II     H K   AL
Sbjct: 489 IRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAAL 548

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
            ++ +    G+ P+H+ F+S+LS+C+H G V+ G  ++  M + +GI+P +EH+AC+V+L
Sbjct: 549 RFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDL 608

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPV--VWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
             RAG ++EAY++  +K      PV  V G +L AC  +GN  +G+T A  +  L P + 
Sbjct: 609 LSRAGRVEEAYNVYKKKFP---DPVLDVLGIILDACRANGNNELGDTIANDILMLRPMDA 665

Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            NF  L   Y +  + ++V      +   GL+
Sbjct: 666 GNFVQLAHCYASINKWEEVGEAWTYMRSLGLK 697



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 143/469 (30%), Positives = 232/469 (49%), Gaps = 33/469 (7%)

Query: 46  FSSYPKSSPTPLLTNQKAFPK--------------TKLQALDSIIQDLESSVQNGITVQT 91
           FS  PK SP+ L     + P               +   A   ++    S ++  +    
Sbjct: 2   FSYKPKQSPSGLKRCVVSLPHPATTNSVNATINHHSTQGAHHQVLATYASMLKTHVPSDA 61

Query: 92  ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
            TF SLL+ C  L     G+ LH+ I  + L  +  I+S L+  YA FG  D A +VFD 
Sbjct: 62  YTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDY 121

Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211
           M  R     PW ++I  Y+  G   +A +L+ +M  +G++P   T   +L   + L  ++
Sbjct: 122 MPERN--VVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQ 179

Query: 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
               +H  A+ +GF  D  + N+++++Y KCG+I  +R +FD + ++DL+S+NS+++ Y 
Sbjct: 180 C---LHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYA 236

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRRGVEWDLC 328
             G + E   + + M L GF+  P    S+L+ A+    L++G  +HG +LR G   D  
Sbjct: 237 QIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAH 296

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +  SLIVVY K GK+D A  +F+    KDVV W ++I     +    +AL  F QM + G
Sbjct: 297 VETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFG 356

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V P   T  S+++ACA LGS  +G  +   ++ +  +   V     +V +Y + G +D+ 
Sbjct: 357 VKPSTATMASVITACAQLGSYNLGTSILGYILRQ-ELPLDVATQNSLVTMYAKCGHLDQ- 414

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF-ELEPDNE 493
            S IV  M      V W A++     +G VC     A  LF E+  DN+
Sbjct: 415 -SSIVFDMMNRRDLVSWNAMVTGYAQNGYVC----EALFLFNEMRSDNQ 458



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 224/443 (50%), Gaps = 21/443 (4%)

Query: 46  FSSYPKSSPTPLLTNQKAFPKT-KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQL 104
           F   P+ +  P  T    + +T ++    S+  ++    + GI   + T  SLL   + +
Sbjct: 119 FDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMR---RQGIQPSSVTVLSLL---FGV 172

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
             + H   LH          +  +S+ +L +Y   G I+ + ++FD M +R   +  WNS
Sbjct: 173 SELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVS--WNS 230

Query: 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224
           LIS YA++G   + + L   M  +G E    TF  VL   A  G +++G  +H   +R G
Sbjct: 231 LISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAG 290

Query: 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
           F  D  V  +L+ +Y K G I  A  +F+R  +KD++ + +M++G + +G   +A  +FR
Sbjct: 291 FYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFR 350

Query: 285 GMILNGFDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
            M+  G  P    ++S++   + L    +G  + G++LR+ +  D+   NSL+ +Y+K G
Sbjct: 351 QMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCG 410

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLS 398
            LDQ+  +FD M ++D+VSWN+++  ++++    EAL  F +M  D   PD +T VSLL 
Sbjct: 411 HLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQ 470

Query: 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
            CA  G + +G+ + S ++   G+ P +     +V++Y + G +D A     +    +  
Sbjct: 471 GCASTGQLHLGKWIHSFVIRN-GLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDL- 528

Query: 459 PVVWGALLYACYLHGNVCMGETA 481
            V W A++     HG    GE A
Sbjct: 529 -VSWSAIIVGYGYHGK---GEAA 547


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 234/445 (52%), Gaps = 46/445 (10%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF S+L  C  + A   G ++H  I  N    N  + S L+ +YA  G +  A
Sbjct: 310 GVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSA 369

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +V + M +    +  WNS+I G    G  E+AI L+ +M    ++ D +TFP VL  C 
Sbjct: 370 KRVLENMEDDDVVS--WNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCI 427

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            +G I  G+ VH   ++ GF     V NALVDMYAK  D+  A  VF+++  KD+IS+ S
Sbjct: 428 -VGRID-GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTS 485

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRG 322
           ++TGY  +G   E+   F  M ++G  PD   ++SIL   A  +LL  G QVH   ++ G
Sbjct: 486 LVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLG 545

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFE 379
           +   L + NSL+ +Y+K G LD A  +F  M  +DV++W ++I  ++++    ++L YF+
Sbjct: 546 LRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYFQ 605

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
           Q                                   M + YGI P  EHYACM++L+GR 
Sbjct: 606 Q-----------------------------------MKKIYGIEPGPEHYACMIDLFGRL 630

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +DEA   I+ +M+ +    VW ALL AC +HGN+ +GE AA  LFELEP N   + +L
Sbjct: 631 GKLDEAKE-ILNQMDVKPDATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPYVML 689

Query: 500 IKIYGNAGRLDDVERVERMLVDRGL 524
             +Y  A + DD  ++ R++  +G+
Sbjct: 690 SNMYLAARKWDDAAKIRRLMKSKGI 714



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 230/433 (53%), Gaps = 17/433 (3%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L  C  L  ++ G  +H  +  N    N  + + L+ +YA    I EA  +F  +
Sbjct: 214 TLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGL 273

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
           +        W ++++GYA+ G+   AI  +  M  EGVE +QFTFP +L AC+ +     
Sbjct: 274 AFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCF 333

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           GE+VH   VR GFG + +V +ALVDMYAKCGD+  A+ V + + + D++S+NSM+ G + 
Sbjct: 334 GEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVR 393

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI-GAQVHGWVLRRGVEWDLCIAN 331
           HG   EA  +F+ M       D     S+L    + RI G  VH  V++ G E    ++N
Sbjct: 394 HGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSN 453

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLP 388
           +L+ +Y+K   L+ A  +F+ M +KDV+SW S++  ++++    E+L  F  M   GV P
Sbjct: 454 ALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSP 513

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           D     S+LSACA L  ++ G+++ S  + K G+   +     +V +Y + G +D+A ++
Sbjct: 514 DQFIVASILSACAELTLLEFGKQVHSDFI-KLGLRSSLSVNNSLVTMYAKCGCLDDADAI 572

Query: 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETA------AQKLFELEPDNEHNFELLIKI 502
            V     +   + W AL+     +G    G  +       +K++ +EP  EH +  +I +
Sbjct: 573 FVSMHVRDV--ITWTALIVGYARNGK---GRDSLKYFQQMKKIYGIEPGPEH-YACMIDL 626

Query: 503 YGNAGRLDDVERV 515
           +G  G+LD+ + +
Sbjct: 627 FGRLGKLDEAKEI 639



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 192/377 (50%), Gaps = 46/377 (12%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY------------- 175
           S++LL   +  G ID+A ++FD+M  R  +   WN+++SGYA +G               
Sbjct: 118 SNQLLNGLSKSGQIDDARELFDKMLQRDEYT--WNTMVSGYANVGRLVEARELFNGFSSR 175

Query: 176 ------------------EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
                              +A  L+ +M  EG +P Q+T   +L+ C+ LGLI+ GE +H
Sbjct: 176 SSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIH 235

Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG-NK-DLISYNSMLTGYIHHGL 275
              V+ GF  + +V+  LVDMYAKC  I +A  +F  +  NK + + + +M+TGY  +G 
Sbjct: 236 GYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGD 295

Query: 276 LVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANS 332
             +A + FR M   G + +     SIL   S +     G QVHG ++R G   +  + ++
Sbjct: 296 DHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSA 355

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD 389
           L+ +Y+K G L  A  + ++M   DVVSWNS+I     H  + EA++ F++M    +  D
Sbjct: 356 LVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKID 415

Query: 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449
           H TF S+L+ C  +G  ++  +    +V K G          +V++Y +   ++ AY+ +
Sbjct: 416 HYTFPSVLNCCI-VG--RIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYA-V 471

Query: 450 VEKMEFEASPVVWGALL 466
            EKM FE   + W +L+
Sbjct: 472 FEKM-FEKDVISWTSLV 487



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 143/284 (50%), Gaps = 44/284 (15%)

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV------------ 277
           F  N L++  +K G I  AR +FD++  +D  ++N+M++GY + G LV            
Sbjct: 116 FHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSR 175

Query: 278 -------------------EAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVH 315
                              EAFD+F+ M L G  P    + SIL   S   L++ G  +H
Sbjct: 176 SSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIH 235

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSK--- 370
           G+V++ G E ++ +   L+ +Y+K   + +A  LF  +   + + V W +++  +++   
Sbjct: 236 GYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGD 295

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK-YGISPRVEHY 429
           DH+A+ +F  M  +GV  +  TF S+L+AC+ + +   GE++   +V   +G +  V+  
Sbjct: 296 DHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQ-- 353

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           + +V++Y + G +  A   ++E ME +   V W +++  C  HG
Sbjct: 354 SALVDMYAKCGDLGSA-KRVLENME-DDDVVSWNSMIVGCVRHG 395


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 279/552 (50%), Gaps = 45/552 (8%)

Query: 7   PPSSF---HTSLVIIHCGSKNKRSRKQRRQKQQQISRNRITTF----SSYPKSSPTPLLT 59
           PPS++   H  L+   CG          R+  Q IS   + +F    ++Y K S  PL+ 
Sbjct: 40  PPSTYFSNHFILLYSKCGR-----LAWARKAFQDISDPNVFSFNAIIAAYAKES-RPLIA 93

Query: 60  NQ--KAFPKTKLQALDSIIQDLESSVQN-------------GITVQTETFASLLETCYQL 104
           +Q     P+  L + +++I       +              G+ +   T ++++  C   
Sbjct: 94  HQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD- 152

Query: 105 KAVEHGI--KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
              + G+  +LH +  ++       +++ LL  Y   G +D+A +VF  M         W
Sbjct: 153 ---DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG-IRDEVSW 208

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           NS+I  Y +  E   A+ L+ +M   G+  D FT   VL A   L  +  G + H   ++
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 223 FGFGFDGFVLNALVDMYAKCGD-IVKARTVFDRIGNKDLISYNSMLTGYIHHG-LLVEAF 280
            GF  +  V + L+D+Y+KCG  +   R VF+ I   DL+ +N+M++GY  +   L +A 
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 281 DIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVV 336
           + FR M   G+ P+    V + S  +N S    G Q+H   L+  +  + + + N+LI +
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM 388

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           YSK G L  A  LFD M + + VS NS+I     H  + E+L  F+ M    + P  +TF
Sbjct: 389 YSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +S+LSACAH G V+ G   F++M EK+ I P  EHY+CM++L GRAG + EA ++I  +M
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA-RM 507

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            F    + W +LL AC  HGN+ +   AA ++ +LEP N   + +L  +Y +AGR ++V 
Sbjct: 508 PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVA 567

Query: 514 RVERMLVDRGLE 525
            V + + DRG++
Sbjct: 568 TVRKFMRDRGVK 579



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 239/517 (46%), Gaps = 84/517 (16%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           N I+   + F  LL+TC   + +  G  LH L   + +  +   S+  + LY+  G +  
Sbjct: 2   NQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAW 61

Query: 145 AHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEY 175
           A + F  +S+   F+F                              +N+LIS YA+ GE 
Sbjct: 62  ARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGET 121

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVL-- 232
             A+ L+  M E G++ D FT   V+ AC   +GLI       L +V    GFD +V   
Sbjct: 122 APALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIG-----QLHSVAVSSGFDSYVSVN 176

Query: 233 NALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
           NAL+  Y K GD+  A+ VF  +G  +D +S+NSM+  Y  H    +A  +F+ M+  G 
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 292 DPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           + D   ++S+L   + L     G Q HG +++ G   +  + + LI +YSK G     C 
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 349 -LFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
            +F+ + + D+V WN+++  +S++ E    AL  F QM+  G  P+  +FV ++SAC++L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY---------------SM 448
            S   G+++ S+ ++    S R+     ++ +Y + G + +A                SM
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSM 416

Query: 449 IV----EKMEFEA--------------SPVVWGALLYACYLHGNVCMGE---TAAQKLFE 487
           I       +E E+              + + + ++L AC   G V  G       ++ F 
Sbjct: 417 IAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN 476

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDRG 523
           +EP+ EH +  +I + G AG+L + E  + RM  + G
Sbjct: 477 IEPEAEH-YSCMIDLLGRAGKLSEAENLIARMPFNPG 512


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 250/462 (54%), Gaps = 16/462 (3%)

Query: 71  ALDSIIQDLESSVQ-NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
            L+  +  LE+ VQ N +T+ + T AS + +        HG  + R    ++        
Sbjct: 282 GLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDV-----AFC 336

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+++Y + G + +A ++F +M  + A +  W ++ISGY + G  + A+ +Y  ME   
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFSRMETKDAMS--WTAMISGYEKNGFPDKALEVYALMELHN 394

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD  T    L ACA LG + VG K+H  A   GF     V NAL++MYAK   I KA 
Sbjct: 395 VSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAI 454

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV---AISSILANAS 306
            VF  +  KD++S++SM+ G+  +    EA   FR M L    P+ V   A  S  A   
Sbjct: 455 EVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSACAATG 513

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            LR G ++H +VLR G+  +  + N+L+ +Y K G+   A   F    +KDVVSWN ++ 
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 367 ---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
              AH     AL  F QM   G  PD +TFV+LL AC+  G V  G  LF +M EK+ I 
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIV 633

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P ++HYACMV+L  R G + EAY++I  +M  +    VWGALL  C +H +V +GE AA+
Sbjct: 634 PNLKHYACMVDLLSRVGKLTEAYNLI-NRMPIKPDAAVWGALLNGCRIHRHVELGELAAK 692

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + ELEP++     LL  +Y +AG+   V RV + + ++GLE
Sbjct: 693 VILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLE 734



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 210/391 (53%), Gaps = 20/391 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLI----PTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
            + +L   C   +AV+ G++         P+  LR    + S L+R    FG I  A +V
Sbjct: 98  AYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVR----FGEIWHAWRV 153

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F +M  R  F+  WN ++ GY ++G  E+A+ LY++M   G+ PD +TFP VL+ C G+ 
Sbjct: 154 FAKMPERDVFS--WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIP 211

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
             R+G +VH   +RFGFG +  VLNALV MYAKCGDIV AR VFD +   D IS+N+M+ 
Sbjct: 212 DWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEW 325
           G+  +       ++F  M+ N   P+ + I+S+   + +L       ++HG+ ++RG   
Sbjct: 272 GHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI 331

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           D+   NSLI +Y+  G++  A  +F  M  KD +SW ++I  + K+    +AL  +  ME
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALME 391

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              V PD +T  S L+ACA LG + VG +L  +   K G    V     ++ +Y ++  I
Sbjct: 392 LHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNK-GFIRYVVVANALLEMYAKSKHI 450

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYA-CYLH 472
           D+A    V K   E   V W +++   C+ H
Sbjct: 451 DKAIE--VFKFMAEKDVVSWSSMIAGFCFNH 479


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 207/361 (57%), Gaps = 7/361 (1%)

Query: 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227
           GY++ G   +A+ +Y +M    +EP  F F   LKACA L  + VG  VH   V+   G 
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63

Query: 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287
           D  V N L+ +Y +C    +   VFD++  +++ S+NS+++G++    L EA D+FR M 
Sbjct: 64  DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123

Query: 288 LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
             G     V +++IL   A  + L  G ++H  +++     D+ + NSL+ +Y K G +D
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVD 183

Query: 345 QACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACA 401
               LFD M  KD+ SWN+++  ++ +     A+  F +M   G+ PD +TF++LLS C+
Sbjct: 184 YGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCS 243

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G  + G++LF  M   +G+SP +EHYAC+V++ GRAG ID A  ++V+ M  + S  +
Sbjct: 244 HAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAAL-VVVKNMPMKTSGSI 302

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WG+LL +C LH  V + E  A +LFELEP N  N+ +L  IY NAG  D V  V  M+  
Sbjct: 303 WGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQT 362

Query: 522 R 522
           R
Sbjct: 363 R 363



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 175/368 (47%), Gaps = 44/368 (11%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
            F++ L+ C  L+ +  G  +H  +  +    ++ +++ LLRLY      +E  +VFDQM
Sbjct: 32  AFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQM 91

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WNSLISG+ +  +  +A+ ++ +M+ EG+     T   +L  CA +  +  
Sbjct: 92  PERNVAS--WNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLS 149

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G+++H   V+     D  VLN+LVDMY KCG +   R +FD + +KDL S+N+MLTGY  
Sbjct: 150 GKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAI 209

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           +G +  A D+F  M   G  PD V   ++L+  S    G    G  L   +E D  ++ S
Sbjct: 210 NGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCS--HAGLTEDGQKLFHRMEMDFGVSPS 267

Query: 333 ------LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386
                 L+ +  + G++D A  +  +MP K   S                          
Sbjct: 268 LEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGS-------------------------- 301

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
                 + SLL++C     V + E + + + E    +P   +Y  + N+Y  AG+ D + 
Sbjct: 302 -----IWGSLLNSCRLHNEVPLAEAIANRLFELEPYNP--GNYVMLSNIYANAGMWD-SV 353

Query: 447 SMIVEKME 454
           +M+ E M+
Sbjct: 354 NMVREMMQ 361



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+     T  ++L  C ++ A+  G ++H  I  +  R +  + + L+ +Y   G++D
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVD 183

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
              ++FD M  R+     WN++++GYA  G    A+ L+ +M   G+ PD  TF  +L  
Sbjct: 184 YGRRLFDGM--RSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSG 241

Query: 204 CAGLGLIRVGEKV-HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           C+  GL   G+K+ H   + FG          LVDM  + G I  A  V   +  K   S
Sbjct: 242 CSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGS 301

Query: 263 -YNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDP-DPVAISSILANASL 307
            + S+L     H  +  A  I   +  L  ++P + V +S+I ANA +
Sbjct: 302 IWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGM 349


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 249/446 (55%), Gaps = 26/446 (5%)

Query: 97  LLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           LLE C  L  ++   ++H  +I T L+     +S ++L + +T  +   A  +F+ + N 
Sbjct: 15  LLEKCKTLDTLK---QVHAHMITTGLIFHTYPLS-RILLISSTI-VFTHALSIFNHIPNP 69

Query: 156 TAFAFPWNSLISGYAELGEYED-AIALYFQ-MEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           T F +  N+LIS  A +  +   A +LY + +    ++P+ FTFP + KAC     +R G
Sbjct: 70  TIFLY--NTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHG 127

Query: 214 EKVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
             +H   ++F     D FV  AL++ YAKCG +   R +F++I   DL S+NS+L+ Y+H
Sbjct: 128 RALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVH 187

Query: 273 HG--------LLVEAFDIFRGM---ILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321
           +         L +E   +F  M   ++   +   VA+ S  A    L  GA  H +VL+ 
Sbjct: 188 NSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKH 247

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
            ++ +  +  +LI +YSK G LD AC LFD +P +D + +N++I     H   H+AL  F
Sbjct: 248 NLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLF 307

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           ++M  +G+ PD +T V  + +C+H+G V+ G  +F  M E YG+ P++EHY C+V+L GR
Sbjct: 308 KKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGR 367

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG + EA   ++  M  + + V+W +LL A  +HGN+ +GE   + L +LEP+   N+ L
Sbjct: 368 AGRLREAEERVL-NMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVL 426

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  +Y +  R DDV+RV +++ D G+
Sbjct: 427 LSNMYASINRWDDVKRVRKLMKDHGI 452



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 162/345 (46%), Gaps = 28/345 (8%)

Query: 43  ITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTE--TFASLLET 100
           ++ F+  P  +PT  L N        ++    I   L S V    T++    TF SL + 
Sbjct: 60  LSIFNHIP--NPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKA 117

Query: 101 CYQLKAVEHGIKLHR-----LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           C     + HG  LH      L PT     +  + + LL  YA  G +     +F+Q+S  
Sbjct: 118 CGSQPWLRHGRALHTHVLKFLEPTC----DPFVQAALLNYYAKCGKVGACRYLFNQISKP 173

Query: 156 TAFAFPWNSLISGYA--------ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
              +  WNS++S Y         ++    + + L+ +M++  ++ ++ T   ++ ACA L
Sbjct: 174 DLAS--WNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAEL 231

Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
           G +  G   H+  ++     + FV  AL+DMY+KCG +  A  +FD++ ++D + YN+M+
Sbjct: 232 GALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMI 291

Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLR-RGV 323
            G+  HG   +A D+F+ M L G  PD V +   + + S   L+  G  V   +    GV
Sbjct: 292 GGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGV 351

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
           E  L     L+ +  + G+L +A     +MP K + V W S++ A
Sbjct: 352 EPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGA 396


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/437 (31%), Positives = 238/437 (54%), Gaps = 13/437 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TFAS++++C  LK +     LH     + L  N+ + + L+        ID+A  +F  M
Sbjct: 306 TFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLM 365

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
               +    W ++ISGY + G+ + A+ L+  M  EGV+P+ FT+  +L     + +   
Sbjct: 366 HGVQSVV-SWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI--- 421

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
             ++H + ++  +     V  AL+D + K G+I  A  VF+ I  KD+I++++ML GY  
Sbjct: 422 -SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQ 480

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRRGVEWDLC 328
            G   EA  IF  +   G  P+     SI+    A  + +  G Q H + ++  +   LC
Sbjct: 481 AGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALC 540

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDG 385
           +++SL+ +Y+K G ++ A  +F    ++D+VSWNS+I     H +  +AL  FE+M++  
Sbjct: 541 VSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRN 600

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +  D +TF+ ++SACAH G V  G+  F++M+  + I+P +EHY+CM++LY RAG++ +A
Sbjct: 601 LEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKA 660

Query: 446 YSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505
              I+  M F  +  VW  +L A  +H N+ +G+ AA+K+  LEP +   + LL  IY  
Sbjct: 661 MD-IINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAA 719

Query: 506 AGRLDDVERVERMLVDR 522
           AG   +   V +++  R
Sbjct: 720 AGNWHEKVNVRKLMDKR 736



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 226/475 (47%), Gaps = 54/475 (11%)

Query: 60  NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119
           NQ  F  ++       +    S  ++G++  + T + +L  C        G ++H     
Sbjct: 71  NQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVK 130

Query: 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179
             L  +  + + L+ +Y   G + +  +VFD+M +R   +  WNSL++GY+    + D +
Sbjct: 131 CGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVS--WNSLLTGYS-WNRFNDQV 187

Query: 180 -ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238
             L+  M+ EG  PD +T   V+ A A  G + +G ++H   V+ GF  +  V N+L+ M
Sbjct: 188 WELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISM 247

Query: 239 YAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298
            +K G +  AR VFD + NKD +S+NSM+ G++ +G  +EAF+ F  M L G  P     
Sbjct: 248 LSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATF 307

Query: 299 SSILAN-ASLLRIG--AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355
           +S++ + ASL  +G    +H   L+ G+  +  +  +L+V  +K  ++D A  LF  M  
Sbjct: 308 ASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHG 367

Query: 356 -KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
            + VVSW ++I  + ++    +A+  F  M R+GV P+H T+ ++L+             
Sbjct: 368 VQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT------------- 414

Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
                         V+H          A  I E ++ ++ K  +E S  V  ALL A   
Sbjct: 415 --------------VQH----------AVFISEIHAEVI-KTNYEKSSSVGTALLDAFVK 449

Query: 472 HGNVCMGETAAQKLFEL-EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            GN+    + A K+FEL E  +   +  ++  Y  AG  ++  ++   L   G++
Sbjct: 450 IGNI----SDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIK 500



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 125/234 (53%), Gaps = 13/234 (5%)

Query: 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---AN 304
           A+ +FD+   +DL  +N +L  Y       EA  +F  +  +G  PD   +S +L   A 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
           +    +G QVH   ++ G+   L + NSL+ +Y+K G +     +FD M  +DVVSWNS+
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 365 IHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           +  +S +    +    F  M+ +G  PD+ T  ++++A A+ G+V +G ++ +++V K G
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVV-KLG 233

Query: 422 ISPRVEHYAC--MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
                E   C  ++++  ++G++ +A  ++ + ME + S V W +++    ++G
Sbjct: 234 F--ETERLVCNSLISMLSKSGMLRDA-RVVFDNMENKDS-VSWNSMIAGHVING 283


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 245/438 (55%), Gaps = 9/438 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S+L     L+ +  G ++H     +       IS+ L+ +YA  G ++ A Q+FD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             R   +  WNS+I  Y +    ++A+ ++ +M +EGV+P   +    L ACA LG +  
Sbjct: 298 LERNVVS--WNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G  +H  +V  G   +  V+N+L+ MY KC ++  A ++F ++ ++ L+S+N+M+ G+  
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQ 415

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
           +G  ++A + F  M      PD    V++ + +A  S+      +HG V+R  ++ ++ +
Sbjct: 416 NGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFV 475

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
             +L+ +Y+K G +  A  +FD M ++ V +WN++I     H     AL  FE+M++  +
Sbjct: 476 TTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTI 535

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+S++SAC+H G V+ G + F +M E Y I   ++HY  MV+L GRAG ++EA+
Sbjct: 536 KPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAW 595

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I++ M  + +  V+GA+L AC +H NV   E AA++LFEL PD+     LL  IY  A
Sbjct: 596 DFIMQ-MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAA 654

Query: 507 GRLDDVERVERMLVDRGL 524
              + V +V   ++ +GL
Sbjct: 655 SMWEKVGQVRVSMLRQGL 672



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 216/378 (57%), Gaps = 14/378 (3%)

Query: 95  ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154
           A LLE C  LK +    ++  L+  N L +     +KL+ L+  +G +DEA +VF+ + +
Sbjct: 41  ALLLERCSSLKELR---QILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97

Query: 155 RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214
           +      +++++ G+A++ + + A+  + +M  + VEP  + F  +LK C     +RVG+
Sbjct: 98  K--LNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGK 155

Query: 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHG 274
           ++H   V+ GF  D F +  L +MYAKC  + +AR VFDR+  +DL+S+N+++ GY  +G
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215

Query: 275 LLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIAN 331
           +   A ++ + M      P  + I S+L   S LR   +G ++HG+ +R G +  + I+ 
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIST 275

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLP 388
           +L+ +Y+K G L+ A  LFD M +++VVSWNS+I A+ ++    EA++ F++M  +GV P
Sbjct: 276 ALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKP 335

Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
             ++ +  L ACA LG ++ G  +  + VE  G+   V     ++++Y +   +D A SM
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVE-LGLDRNVSVVNSLISMYCKCKEVDTAASM 394

Query: 449 IVEKMEFEASPVVWGALL 466
              K++   + V W A++
Sbjct: 395 F-GKLQ-SRTLVSWNAMI 410


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 252/462 (54%), Gaps = 25/462 (5%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI--SSKLLRLY 136
           +E   +N  T Q+  F  LL  C  L  ++   ++H     N    N  +   S++L + 
Sbjct: 14  IEIKGENSKTHQSR-FLHLLTDCTDLSKLK---QIHAQAIRNFSTHNSSLFLYSRILHVS 69

Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE-LGEYEDAIALYFQMEEEG-VEPDQ 194
           +     D A +VF+Q+ N  +F   WN+LI   A  L   E AI ++++M EEG VEPD+
Sbjct: 70  SLIDF-DYACRVFNQIDNPNSFM--WNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDK 126

Query: 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254
            TFP +LKACA +  +  G + H    + G   D +V N+L+ +YA CG +  A  VF++
Sbjct: 127 HTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEK 186

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG 311
           +  + L+S+N M+  Y+  GL   A  +F  M  N F+PD   + SI+   A    L +G
Sbjct: 187 MPLRSLVSWNVMIDAYVQSGLFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLG 245

Query: 312 AQVHGWVLRR---GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
              H +VLR+    +  D+ I +SL+ +YSK G L  A  +F+ MP+ D+ SWNS+I A 
Sbjct: 246 MWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILAL 305

Query: 368 --HSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
             H +   AL  F ++ E +  LP+ +TFV +LSAC H G V  G + F +MV  Y I P
Sbjct: 306 AMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEP 365

Query: 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY-LHGNVCMGETAAQ 483
           R+EHY C+V+L  R+G IDEA  + V  M  +   V+W +LL ACY  +  V + E  A 
Sbjct: 366 RLEHYGCLVDLLSRSGFIDEALEL-VANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAF 424

Query: 484 KLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           K+ + E   +   + +L ++Y +A + +DV  + +++ D G+
Sbjct: 425 KILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGV 466


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 250/462 (54%), Gaps = 16/462 (3%)

Query: 71  ALDSIIQDLESSVQ-NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGIS 129
            L+  +  LE+ VQ N +T+ + T AS + +        HG  + R    ++        
Sbjct: 282 GLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDV-----AFC 336

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           + L+++Y + G + +A ++F +M  + A +  W ++ISGY + G  + A+ +Y  ME   
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFSRMETKDAMS--WTAMISGYEKNGFPDKALEVYALMELHN 394

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD  T    L ACA LG + VG K+H  A   GF     V NAL++MYAK   I KA 
Sbjct: 395 VSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAI 454

Query: 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV---AISSILANAS 306
            VF  +  KD++S++SM+ G+  +    EA   FR M L    P+ V   A  S  A   
Sbjct: 455 EVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSACAATG 513

Query: 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
            LR G ++H +VLR G+  +  + N+L+ +Y K G+   A   F    +KDVVSWN ++ 
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 367 ---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
              AH     AL  F QM   G  PD +TFV+LL AC+  G V  G  LF +M EK+ I 
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIV 633

Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
           P ++HYACMV+L  R G + EAY++I  +M  +    VWGALL  C +H +V +GE AA+
Sbjct: 634 PNLKHYACMVDLLSRVGKLTEAYNLI-NRMPIKPDAAVWGALLNGCRIHRHVELGELAAK 692

Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            + ELEP++     LL  +Y +AG+   V RV + + ++GLE
Sbjct: 693 VILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLE 734



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 137/391 (35%), Positives = 214/391 (54%), Gaps = 20/391 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLI----PTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
            + +L   C   +AV+ G++         P+  LR    + S L+R    FG I  A +V
Sbjct: 98  AYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVR----FGEIWHAWRV 153

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F +M  R  F+  WN ++ GY ++G  E+A+ LY++M   G+ PD +TFP VL+ C G+ 
Sbjct: 154 FAKMPERDVFS--WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIP 211

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
             R+G +VH   +RFGFG +  VLNALV MYAKCGDIV AR VFD +   D IS+N+M+ 
Sbjct: 212 DWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI-LANASLLRIG--AQVHGWVLRRGVEW 325
           G+  +       ++F  M+ N   P+ + I+S+ +A+  L  +G   ++HG+ ++RG   
Sbjct: 272 GHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI 331

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQME 382
           D+   NSLI +Y+  G++  A  +F  M  KD +SW ++I  + K+    +AL  +  ME
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALME 391

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
              V PD +T  S L+ACA LG + VG +L  +   K  I   V   A ++ +Y ++  I
Sbjct: 392 LHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANA-LLEMYAKSKHI 450

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYA-CYLH 472
           D+A    V K   E   V W +++   C+ H
Sbjct: 451 DKAIE--VFKFMAEKDVVSWSSMIAGFCFNH 479


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/398 (37%), Positives = 224/398 (56%), Gaps = 20/398 (5%)

Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE----GVEPDQFTF 197
           +  A ++FD+M  R  FA  W++L+SGY   G+ E A+ALY +M+EE    G + ++FT 
Sbjct: 111 LPSARELFDRMPQRDHFA--WSALVSGYTRHGQPEAALALYRRMQEEPGNDGAD-NEFTA 167

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGF---GFDGFVLNALVDMYAKCGDIVKARTVFDR 254
              L A A     R G ++H   VR G    G D  + +AL DMYAKCG +  AR VFDR
Sbjct: 168 SSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDR 227

Query: 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI-LNGFDPDPVAISSIL---ANASLLRI 310
           +  +D +S+ +M+  Y   G   E F +F  M+   G  P+    + +L   A  ++   
Sbjct: 228 MPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESF 287

Query: 311 GAQVHGWVLRRGVEWDLCIANS-LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
           G QVHG + + G   D C A S L+ +YSK G +  A  +F+ M + D+VSW ++I  ++
Sbjct: 288 GRQVHGRMAKSGTG-DSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYA 346

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           ++    EAL YF+   R G+ PDH+TFV +LSACAH G V  G  +F  + E+Y I    
Sbjct: 347 QNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTA 406

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF 486
           +HYAC+++L  R+G  + A  MI   M  + +  +W +LL  C +H NV +   AA+ LF
Sbjct: 407 DHYACVIDLLSRSGQFERAEKMI-GNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALF 465

Query: 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           E+EP+N   +  L  IY + G  D+VE V R++  +G+
Sbjct: 466 EIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGI 503



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 146/320 (45%), Gaps = 40/320 (12%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEE 188
           S L  +YA  G +D+A +VFD+M  R A +  W +++  Y + G   +   L+  M    
Sbjct: 206 SALADMYAKCGRVDDARRVFDRMPVRDAVS--WTAMVERYFDGGRGGEGFRLFLHMLRTR 263

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
           GV P++FT+  VL+ACA   +   G +VH    + G G   F  +AL+ MY+KCGD+  A
Sbjct: 264 GVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308
             VF+ +   DL+S+ ++++GY  +G   EA   F   + +G  PD V    +L+     
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLS----- 378

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368
              A  H  ++ +G+E    I     + ++ D     AC +       D++S +      
Sbjct: 379 ---ACAHAGLVDKGLEIFHSIKEQYCIEHTAD---HYACVI-------DLLSRSG----- 420

Query: 369 SKDHEALIYFEQMER----DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
                    FE+ E+      V P+   + SLL  C    +V +  R    + E    +P
Sbjct: 421 --------QFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENP 472

Query: 425 RVEHYACMVNLYGRAGLIDE 444
               Y  + N+Y   GL DE
Sbjct: 473 AT--YVTLANIYASVGLFDE 490


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 146/428 (34%), Positives = 239/428 (55%), Gaps = 30/428 (7%)

Query: 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF 160
           C + +A+  G ++H  +     R    ++++L+ +YA  G +++A  V D M  R   + 
Sbjct: 45  CVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVS- 103

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            W ++ISGY++    + A  L+  M   G+   +                    +VH  A
Sbjct: 104 -WTAMISGYSQNERPDQAWELFIMMLRAGIHQVK--------------------QVHAFA 142

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
           V+  F    FV ++L+DMYAK  +I +AR VFD +  +D++SY ++L+GY   GL  EA 
Sbjct: 143 VKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEAL 202

Query: 281 DIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
           D+FR +   G   + V  +++L   +  S +  G QVHG +LRR + + + + NSLI +Y
Sbjct: 203 DLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMY 262

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394
           SK GKL  +  +FD MP++ VVSWN+++     H   HE +  F  M  D V PD +T +
Sbjct: 263 SKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMC-DEVKPDSVTLL 321

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           ++LS  +H G V  G  +F  +V++       EHY C+++L GR+G + +A ++I EKM 
Sbjct: 322 AVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLI-EKMP 380

Query: 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
           F+ +  +WG+LL AC +H NV +GE  AQKL ++EP+N  N+ +L  IY  AG   DV R
Sbjct: 381 FQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFR 440

Query: 515 VERMLVDR 522
           V ++++ +
Sbjct: 441 VRKLMLKK 448



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF +LL     L ++++G ++H LI    L     + + L+ +Y+  G +  +
Sbjct: 212 GMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYS 271

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            +VFD M  R+  +  WN+++ GY   G   + + L+  M +E V+PD  T   VL   +
Sbjct: 272 RRVFDSMPERSVVS--WNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVLSGYS 328

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNA-----LVDMYAKCGDIVKARTVFDRI 255
             GL+  G    LD           +LN      ++D+  + G + KA  + +++
Sbjct: 329 HGGLVDEG----LDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKM 379


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 238/438 (54%), Gaps = 11/438 (2%)

Query: 94   FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
              S+L     L +V  G  +H      L    + +   LL +YA  G I++A   F+ ++
Sbjct: 635  LTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVT 694

Query: 154  NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            N       W+ +IS YA+  + E A  L+ +M    V P++F+   VL+ACA + L+ +G
Sbjct: 695  NDDVIL--WSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLG 752

Query: 214  EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
            +++H  A++ G   + FV NAL+D+YAKC D+  +  +F  + + + +S+N+++ GY   
Sbjct: 753  KQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKS 812

Query: 274  GLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGWVLRRGVEWDLCI 329
            G    A  +FR M         V  SS+L    + AS+  +G QVH  + +     D  +
Sbjct: 813  GFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVG-QVHCLIEKSTFNSDTIV 871

Query: 330  ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI---YFEQMERDGV 386
            +NSLI  Y+K G +  A  +F+ + + D+VSWN+II  ++   +A +    F+ M ++ +
Sbjct: 872  SNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSI 931

Query: 387  LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
              + +TFV+LLS C   G V  G  LF  M   +GI P +EHY C+V L GRAG +++A 
Sbjct: 932  KANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDAL 991

Query: 447  SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            + I + +    S +VW ALL +C +H NV +G  +A+K+ E+EP +E  + LL  +Y  A
Sbjct: 992  NFIGD-IPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAA 1050

Query: 507  GRLDDVERVERMLVDRGL 524
            G LD V    + + + G+
Sbjct: 1051 GSLDQVAFFRKSMRNIGV 1068



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 223/475 (46%), Gaps = 24/475 (5%)

Query: 61  QKAFPKTKLQALDSIIQDLESSVQN----GITVQTETFASLLETCYQLKAVEHGIKLHRL 116
            +A P+ +  A ++ +Q LE  + +       V +  +A LL+ C        G  +H  
Sbjct: 394 NQAPPRRRDLAANAALQWLEDELTSLAFPWPGVDSYAYARLLQGCVARGDARGGRAVHGH 453

Query: 117 I--PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           +     L R +   ++ LL +Y   G    AH+VFD +  R   +F   +L+ G+A  GE
Sbjct: 454 VVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSF--VTLVQGHALRGE 511

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234
           +E+A AL+ ++  EG E +QF    VLK    +  + +   VH  A + G   + FV +A
Sbjct: 512 FEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSA 571

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+D Y+ CG +  AR VFD I  KD +++ +M++ Y  +        IF  M +     +
Sbjct: 572 LIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLN 631

Query: 295 PVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
           P A++S+L  A  L    +G  +H   ++   + +  +  +L+ +Y+K G ++ A   F+
Sbjct: 632 PFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFE 691

Query: 352 HMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            +   DV+ W+ +I  ++   ++ +A   F +M R  V P+  +  S+L ACA++  + +
Sbjct: 692 MVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDL 751

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G+++ +  + K G    +     +++LY +    D   S+ +     + + V W  ++  
Sbjct: 752 GKQIHNHAI-KIGHESELFVGNALIDLYAKCS--DMESSLEIFSSLRDVNEVSWNTIIVG 808

Query: 469 CYLHGNVCMGETAAQKLFELE----PDNEHNFELLIKIYGNAGRLDDVERVERML 519
               G    GE A     E+     P  +  +  +++   +   ++ V +V  ++
Sbjct: 809 YSKSG---FGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLI 860


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 264/506 (52%), Gaps = 49/506 (9%)

Query: 62  KAFPKT-KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN 120
           KAF K+   ++  S+ Q L    ++G+     T+  +L+    +  V  G K+H  +   
Sbjct: 81  KAFVKSGSFRSAISLFQQLR---EHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKT 137

Query: 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIA 180
            L  +  + +  + +YA  GL++   QVF++M +R A +  WN +ISGY     +E+A+ 
Sbjct: 138 GLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVS--WNIMISGYVRCKRFEEAVD 195

Query: 181 LYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
           +Y +M  E  E P++ T    L ACA L  + +G+++H D +         + NAL+DMY
Sbjct: 196 VYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIH-DYIASELDLTTIMGNALLDMY 254

Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR--------------- 284
            KCG +  AR +FD +  K++  + SM+TGY+  G L +A ++F                
Sbjct: 255 CKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMIN 314

Query: 285 ----------------GMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW 325
                            M + G  PD   + ++L   A +  L  G  +H ++    ++ 
Sbjct: 315 GYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKV 374

Query: 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQME 382
           D  +  +LI +Y+K G ++++  +F+ + +KD  SW SII     + K  EAL  F+ M+
Sbjct: 375 DAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQ 434

Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
             G+ PD +TFV++LSAC+H G V+ G +LF  M   Y I P +EHY C ++L GRAGL+
Sbjct: 435 TCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLL 494

Query: 443 DEAYSMIVEKMEFEASPVV---WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
            EA  + V+K+  + + ++   +GALL AC  +GN+ MGE  A  L +++  +     LL
Sbjct: 495 QEAEEL-VKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLL 553

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY +A R +DV +V   + D G++
Sbjct: 554 ASIYASADRWEDVRKVRNKMKDLGIK 579



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 243/505 (48%), Gaps = 88/505 (17%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL--RLYATFGLIDEAHQVFD 150
           T+ SLL++C  +  ++  I+ H  I    L++++   +KL+   + ++ G  + A+++F+
Sbjct: 10  TYISLLKSCKSMSQLKQ-IQAH--IFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFN 66

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
            + + + F +  N +I  + + G +  AI+L+ Q+ E GV PD +T+P VLK    +G +
Sbjct: 67  YIHDPSLFIY--NLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEV 124

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           R GEKVH   V+ G  FD +V N+ +DMYA+ G +     VF+ + ++D +S+N M++GY
Sbjct: 125 REGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGY 184

Query: 271 IHHGLLVEAFDIFRGMILNGFD-PDPVAISSILANASLLR---IGAQVHGWVLRRGVEWD 326
           +      EA D++R M     + P+   + S L+  ++LR   +G ++H ++     E D
Sbjct: 185 VRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYI---ASELD 241

Query: 327 LC--IANSLIVVYSK-------------------------------DGKLDQACWLFDHM 353
           L   + N+L+ +Y K                                G+LDQA  LF+  
Sbjct: 242 LTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERS 301

Query: 354 PQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
           P +D+V W ++I+ +   ++  E +  F +M+  GV PD    V+LL+ CA  G+++ G+
Sbjct: 302 PSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGK 361

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM--------------IVEKMEFE 456
            + + + E       V   A ++ +Y + G I++++ +              I+  +   
Sbjct: 362 WIHNYIDENRIKVDAVVGTA-LIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMN 420

Query: 457 ASP-------------------VVWGALLYACYLHGNVCMGET---AAQKLFELEPDNEH 494
             P                   + + A+L AC   G V  G     +   ++ +EP+ EH
Sbjct: 421 GKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEH 480

Query: 495 NFELLIKIYGNAGRLDDVERVERML 519
            +   I + G AG L + E + + L
Sbjct: 481 -YGCFIDLLGRAGLLQEAEELVKKL 504


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 279/552 (50%), Gaps = 45/552 (8%)

Query: 7   PPSSF---HTSLVIIHCGSKNKRSRKQRRQKQQQISRNRITTF----SSYPKSSPTPLLT 59
           PPS++   H  L+   CG          R+  Q IS   + +F    ++Y K S  PL+ 
Sbjct: 40  PPSTYFSNHFILLYSKCGR-----LAWARKAFQDISDPNVFSFNAIIAAYAKES-RPLIA 93

Query: 60  NQ--KAFPKTKLQALDSIIQDLESSVQN-------------GITVQTETFASLLETCYQL 104
           +Q     P+  L + +++I       +              G+ +   T ++++  C   
Sbjct: 94  HQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD- 152

Query: 105 KAVEHGI--KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
              + G+  +LH +  ++       +++ LL  Y   G +D+A +VF  M         W
Sbjct: 153 ---DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG-IRDEVSW 208

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222
           NS+I  Y +  E   A+ L+ +M   G+  D FT   VL A   L  +  G + H   ++
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 223 FGFGFDGFVLNALVDMYAKCGD-IVKARTVFDRIGNKDLISYNSMLTGYIHHG-LLVEAF 280
            GF  +  V + L+D+Y+KCG  +   R VF+ I   DL+ +N+M++GY  +   L +A 
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 281 DIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVV 336
           + FR M   G+ P+    V + S  +N S    G Q+H   L+  +  + + + N+LI +
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM 388

Query: 337 YSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF 393
           YSK G L  A  LFD M + + VS NS+I     H  + E+L  F+ M    + P  +TF
Sbjct: 389 YSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448

Query: 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453
           +S+LSACAH G V+ G   F++M EK+ I P  EHY+CM++L GRAG + EA ++I  +M
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA-RM 507

Query: 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
            F    + W +LL AC  HGN+ +   AA ++ +LEP N   + +L  +Y +AGR ++V 
Sbjct: 508 PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVA 567

Query: 514 RVERMLVDRGLE 525
            V + + DRG++
Sbjct: 568 TVRKFMRDRGVK 579



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 239/517 (46%), Gaps = 84/517 (16%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           N I+   + F  LL+TC   + +  G  LH L   + +  +   S+  + LY+  G +  
Sbjct: 2   NQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAW 61

Query: 145 AHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEY 175
           A + F  +S+   F+F                              +N+LIS YA+ GE 
Sbjct: 62  ARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGET 121

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVL-- 232
             A+ L+  M E G++ D FT   V+ AC   +GLI       L +V    GFD +V   
Sbjct: 122 APALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIG-----QLHSVAVSSGFDSYVSVN 176

Query: 233 NALVDMYAKCGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
           NAL+  Y K GD+  A+ VF  +G  +D +S+NSM+  Y  H    +A  +F+ M+  G 
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 292 DPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           + D   ++S+L   + L     G Q HG +++ G   +  + + LI +YSK G     C 
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 349 -LFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
            +F+ + + D+V WN+++  +S++ E    AL  F QM+  G  P+  +FV ++SAC++L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY---------------SM 448
            S   G+++ S+ ++    S R+     ++ +Y + G + +A                SM
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSM 416

Query: 449 IV----EKMEFEA--------------SPVVWGALLYACYLHGNVCMGE---TAAQKLFE 487
           I       +E E+              + + + ++L AC   G V  G       ++ F 
Sbjct: 417 IAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN 476

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVDRG 523
           +EP+ EH +  +I + G AG+L + E  + RM  + G
Sbjct: 477 IEPEAEH-YSCMIDLLGRAGKLSEAENLIARMPFNPG 512


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 246/447 (55%), Gaps = 13/447 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
            G+     TF SL ++C   +    G ++H          +    + L+ +Y+  G +  
Sbjct: 82  QGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVS 138

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKA 203
           A +VFD+M ++T  +  W ++I  +A+  +  +A+ L+ +M + E V+P++ T   VL A
Sbjct: 139 ARKVFDKMEDKTVVS--WATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTA 196

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA    + + +++H      GFG    +   L+D+Y KCG +  AR +FD+   K+L S+
Sbjct: 197 CARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSW 256

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
           N M+ G++      EA  +FR M   G   D V ++S+L    +   L +G  +H ++ +
Sbjct: 257 NIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKK 316

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIY 377
           + ++ D+ +  +L+ +Y+K G ++ A  +F  MP+KDV++W ++I   +   +   AL Y
Sbjct: 317 QRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQY 376

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F++M   GV PD +TFV +L+AC+H G V  G   F+ M + YGI P +EHY  +V++ G
Sbjct: 377 FDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILG 436

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG I EA  +I + M       V G LL AC +HGN+   E AA++L E++P +   + 
Sbjct: 437 RAGRIAEAEELI-KSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYV 495

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  IY ++ + ++ +R   ++ +RG+
Sbjct: 496 LLSNIYKSSKKWEEAKRTRELMAERGM 522



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 187/356 (52%), Gaps = 18/356 (5%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           G +  A  VF Q+ N T++    NS+I G  +   +++A+  Y +M  +G+ PD++TFP 
Sbjct: 36  GSLQYARLVFSQIPNPTSYT--CNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
           + K+C        G+++H  + + GF  D +  N L++MY+ CG +V AR VFD++ +K 
Sbjct: 94  LFKSCRNSS---EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 260 LISYNSMLTGYIHHGLLVEAFDIF-RGMILNGFDPDPVAISSIL---ANASLLRIGAQVH 315
           ++S+ +M+  +       EA  +F R M      P+ V + ++L   A A  L +  ++H
Sbjct: 151 VVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIH 210

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---H 372
            ++   G    + +   L+ VY K G +  A  LFD   +K++ SWN +I+ H +D    
Sbjct: 211 EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYE 270

Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
           EAL+ F +M+  G+  D +T  SLL AC HLG++++G+ L +  ++K  I   V     +
Sbjct: 271 EALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAY-IKKQRIDVDVALGTAL 329

Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL 488
           V++Y + G I+ A  +  E  E +   + W AL+    + G     E A Q   E+
Sbjct: 330 VDMYAKCGSIETAIQVFHEMPEKDV--MTWTALILGLAMCGQ---AENALQYFDEM 380



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 7/247 (2%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYA--KCGDIVKARTVFDRIGNKDLISYNSMLTGYI 271
           +++H   +R G  FD F  + +V   +  + G +  AR VF +I N    + NS++ G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 272 HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIAN 331
              L  EA   ++ M++ G  PD     S+  +      G Q+H    + G   D    N
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQN 124

Query: 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQ-MERDGVL 387
           +L+ +YS  G L  A  +FD M  K VVSW ++I  H+   + +EA+  F++ M+ + V 
Sbjct: 125 TLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVK 184

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
           P+ +T V++L+ACA    + + +R+    ++++G    V     ++++Y + G +  A  
Sbjct: 185 PNEVTLVNVLTACARARDLAMVKRIHEY-IDEHGFGRHVVLNTVLMDVYCKCGCVQLARD 243

Query: 448 MIVEKME 454
           +  +  E
Sbjct: 244 LFDKAQE 250


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 245/441 (55%), Gaps = 22/441 (4%)

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
             +  G  +H L+       +  + + ++ +Y+    +  A +VF+ +         WNS
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 165 LISGYAELGEYEDAIALYFQMEEEG---VEPDQFTFPRVLKACAGLGLIRVGEKVH-LDA 220
           LISG+   GE E A+  +  M  EG   VEP++ T   +LK+CA LG +     VH   +
Sbjct: 239 LISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYIS 298

Query: 221 VRFG---FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
            R        D  VL AL+DM+A+CG++  AR +FD +  K+++ +++M+ GY       
Sbjct: 299 SRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPE 358

Query: 278 EAFDIFRGMILNG------FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLC 328
           EA  +FR M++ G        P+ V + S++A  S L   R  + +H + +  G++ D  
Sbjct: 359 EALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDAR 418

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           IA++LI + +K G ++    +F  M +  + VVSW+S+I A   H +   AL  F +M  
Sbjct: 419 IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G  P+ +T++S+LSAC+H G V+ G+  F+ M + YG+SP  +HYAC+V+L GRAG +D
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA+++I+  M  +A   +WG+LL AC+LHGN  +GE   +K+  L+ ++  +  LL  +Y
Sbjct: 539 EAHNVIL-NMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMY 597

Query: 504 GNAGRLDDVERVERMLVDRGL 524
            +AGR DDV R+   L   GL
Sbjct: 598 EDAGRWDDVVRMRVELRRSGL 618



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 202/416 (48%), Gaps = 40/416 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF +LL+ C  L+ +   +++H  +    L  ++  ++ L+  Y   G    A QVFD+M
Sbjct: 54  TFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEM 113

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-------EEGVEPDQFTFPRVLKACA 205
              +     W +LIS Y+  G  ++A   + +M         E    D  +   ++ ACA
Sbjct: 114 PEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA 173

Query: 206 ---GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG--NKDL 260
              G   +R G  VH   V++GFG    + N++V MY+ C D+  A  VF+ I    +D+
Sbjct: 174 VGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDV 233

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSIL---ANASLLRIGAQV 314
           +S+NS+++G+  +G    A   F  M+  G    +P+ V + ++L   A    +   + V
Sbjct: 234 VSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 315 HGWVLRRG----VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-- 368
           H ++  R     V  D+ +  +L+ ++++ G L  A  +FD +  K+VV W+++I  +  
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 369 -SKDHEALIYFEQMERDG------VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
            S   EAL  F QM  +G      V P+ +T VS+++AC+ LG+ +        M+ KY 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSAS-----MIHKYA 408

Query: 422 ISPRVEHYA----CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++  ++  A     ++++  + G I+    +  E  E   + V W +++ A  +HG
Sbjct: 409 VATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHG 464



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 173/333 (51%), Gaps = 29/333 (8%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F WNSLI+  A     + A+  + +M+   V  + FTFP +LKACA L  +    +VH  
Sbjct: 19  FHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAY 77

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGLLV 277
             R G   D F   ALVD Y KCG    A  VFD +  G+ D++S+ ++++ Y  +G + 
Sbjct: 78  LTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVD 137

Query: 278 EAFDIF-RGMILNGFDP------DPVAISSILA------NASLLRIGAQVHGWVLRRGVE 324
           EAF  F R   + G+D       D V++ ++++       ++ LR G+ VHG V++ G  
Sbjct: 138 EAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFG 197

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSKDHE---ALIYFE 379
               + NS++ +YS    +  A  +F+ +P  Q+DVVSWNS+I   + + E   AL  FE
Sbjct: 198 VSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFE 257

Query: 380 QMERDG---VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG---ISPRVEHYACMV 433
            M  +G   V P+ +T ++LL +CA LG V+    +   +  ++    ++  V     ++
Sbjct: 258 DMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALL 317

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +++ R G +  A   I + +E + + V W A++
Sbjct: 318 DMHARCGNLALARE-IFDGVEGK-NVVCWSAMI 348



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 4/214 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S++  C +L A      +H+      L ++  I+S L+ + A  G I+   QVF +M
Sbjct: 384 TLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
              T     W+S+I      GE + A+ L+ +M   G EP++ T+  VL AC+  GL+  
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 213 GEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGY 270
           G+       + +G    G     LVD+  + G + +A  V   +  K DL  + S+L   
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAAC 563

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
             HG   +  +I    IL+  D + V    +LAN
Sbjct: 564 HLHG-NCKLGEIVEKKILS-LDSNSVGHHVLLAN 595



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 348 WLFDHMPQKDVVSWNSII--HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           W    +  KD   WNS+I  +A      AL +F +M+   V  ++ TF +LL ACA L  
Sbjct: 8   WYHCSISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAAL-- 65

Query: 406 VKVGERLFSVM-----VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
                RL   +     + + G++      A +V+ YG+ G    A  +  E  E     V
Sbjct: 66  ----RRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVV 121

Query: 461 VWGALLYACYLHGNV 475
            W AL+ A   +G V
Sbjct: 122 SWTALISAYSSNGCV 136


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 243/444 (54%), Gaps = 8/444 (1%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           ++  + TF  LL+ C  L  ++ G  +H  +       +  + + L+ LYA    +  A 
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            VF+ +         W +++S YA+ GE  +A+ ++ QM +  V+PD      VL A   
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
           L  ++ G  +H   V+ G   +  +L +L  MYAKCG +  A+ +FD++ + +LI +N+M
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAM 294

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           ++GY  +G   EA D+F  MI     PD ++I+S +   A    L     ++ +V R   
Sbjct: 295 ISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY 354

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQ 380
             D+ I+++LI +++K G ++ A  +FD    +DVV W+++I     H +  EA+  +  
Sbjct: 355 RDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRA 414

Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           MER GV P+ +TF+ LL AC H G V+ G   F+ M + + I+P+ +HYAC+++L GRAG
Sbjct: 415 MERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAG 473

Query: 441 LIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500
            +D+AY  +++ M  +    VWGALL AC  H +V +GE AAQ+LF ++P N  ++  L 
Sbjct: 474 HLDQAYE-VIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532

Query: 501 KIYGNAGRLDDVERVERMLVDRGL 524
            +Y  A   D V  V   + ++GL
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGL 556



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 194/352 (55%), Gaps = 13/352 (3%)

Query: 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG 189
           +KL+   ++FG I  A QVFD +     F  PWN++I GY+    ++DA+ +Y  M+   
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIF--PWNAIIRGYSRNNHFQDALLMYSNMQLAR 114

Query: 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249
           V PD FTFP +LKAC+GL  +++G  VH    R GF  D FV N L+ +YAKC  +  AR
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 250 TVFD--RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307
           TVF+   +  + ++S+ ++++ Y  +G  +EA +IF  M      PD VA+ S+L   + 
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234

Query: 308 ---LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
              L+ G  +H  V++ G+E +  +  SL  +Y+K G++  A  LFD M   +++ WN++
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAM 294

Query: 365 IHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
           I  ++K+    EA+  F +M    V PD ++  S +SACA +GS++    ++   V +  
Sbjct: 295 ISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE-YVGRSD 353

Query: 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
               V   + +++++ + G ++ A   +V     +   VVW A++    LHG
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGA--RLVFDRTLDRDVVVWSAMIVGYGLHG 403



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 136/263 (51%), Gaps = 15/263 (5%)

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           +++H   +  G  F GF++  L+   +  GDI  AR VFD +    +  +N+++ GY  +
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
               +A  ++  M L    PD      +L   +  S L++G  VH  V R G + D+ + 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 331 NSLIVVYSKDGKLDQACWLFDH--MPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDG 385
           N LI +Y+K  +L  A  +F+   +P++ +VSW +I+ A++++    EAL  F QM +  
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           V PD +  VS+L+A   L  +K G  + + +V K G+    +    +  +Y + G +  A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVV-KMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 446 YSMIVEKMEFEASP--VVWGALL 466
             ++ +KM+   SP  ++W A++
Sbjct: 277 -KILFDKMK---SPNLILWNAMI 295



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 53  SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIK 112
           SP  +L N       K       I      +   +   T +  S +  C Q+ ++E    
Sbjct: 285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARS 344

Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
           ++  +  +  R +  ISS L+ ++A  G ++ A  VFD+  +R      W+++I GY   
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV--WSAMIVGYGLH 402

Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
           G   +AI+LY  ME  GV P+  TF  +L AC   G++R G
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 239/448 (53%), Gaps = 12/448 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           LE  V +G      T   L+  C +++ +  G +LH  +  + L  +  +   L+ +YA 
Sbjct: 250 LEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAK 309

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE-YE-DAIALYFQME-EEGVEPDQF 195
            GL+ EA +VFD M  R      W +L++GY   G  YE +A+ ++  M  + GV P+ F
Sbjct: 310 CGLVQEARKVFDGM--REHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCF 367

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           TF  VLKACA L     GE+VH   ++ G      V N LV +YAK G +  AR  FD +
Sbjct: 368 TFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVL 427

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GA 312
             K+L+S   +    +    L    D+ R +   G        +S+L+ A+ +     G 
Sbjct: 428 FEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGE 487

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD- 371
           Q+H  V++ G   DL + N+LI +YSK G  + A  +F+ M   +V++W SII+  +K  
Sbjct: 488 QIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHG 547

Query: 372 --HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
              +AL  F  M   GV P+ +T++++LSAC+H+G +    + F+ M + +GI PR+EHY
Sbjct: 548 FASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHY 607

Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489
           ACMV+L GR+GL+ EA   I   M F+A  +VW   L +C +H N  +GE AA+ + E E
Sbjct: 608 ACMVDLLGRSGLLSEAIEFI-NSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILERE 666

Query: 490 PDNEHNFELLIKIYGNAGRLDDVERVER 517
           P +   + LL  +Y   GR +DV  + +
Sbjct: 667 PHDPATYILLSNLYATEGRWEDVAAIRK 694



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 213/410 (51%), Gaps = 28/410 (6%)

Query: 58  LTNQKAF-----PKTKLQALDSI-IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGI 111
           L +Q+ F     P+   +A+ ++ + D ES+  N +     T + LL+ C + K    G 
Sbjct: 17  LNSQQNFNHFNNPQQLHKAITTLNLTDTESTHNNKLI----TSSLLLKQCIRTKNTHLGK 72

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
            LH  + T+ L  +  + + L+ LY+       A  +F  M N       ++S+IS +A 
Sbjct: 73  LLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFAN 132

Query: 172 LGEYEDAIALYFQME-EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230
                 A+ ++ Q+  ++GV P+++ F  V++AC   G  + G  +    ++ G+ FD  
Sbjct: 133 NRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGY-FDSH 191

Query: 231 VLNA--LVDMYAK-C--GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285
           V     L+DM+ K C   D+  AR VFD++  K+++++  M+T    +G   EA D+F  
Sbjct: 192 VCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLE 251

Query: 286 MIL-NGFDPDPVAIS---SILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341
           M++ +G+ PD   ++   S+ A    L +G ++H WV+R G+  DLC+  SL+ +Y+K G
Sbjct: 252 MLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCG 311

Query: 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSK-----DHEALIYFEQM-ERDGVLPDHLTFVS 395
            + +A  +FD M + +V+SW ++++ + +     + EA+  F  M  + GV P+  TF  
Sbjct: 312 LVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSG 371

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
           +L ACA L     GE++    + K G+S        +V++Y ++G ++ A
Sbjct: 372 VLKACASLPDFDFGEQVHGQTI-KLGLSAIDCVGNGLVSVYAKSGRMESA 420


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 246/453 (54%), Gaps = 14/453 (3%)

Query: 80  ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
           +SS  + +     +  + +++C  ++       LH  +  ++  ++  I  +L+  Y   
Sbjct: 23  QSSFVHSLDANVSSLIAAVKSCVSIELCR---LLHCKVVKSVSYRHGFIGDQLVGCYLRL 79

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTF 197
           G    A ++FD+M  R   +  WNSLISGY+  G       +  +M   E G  P++ TF
Sbjct: 80  GHDVCAEKLFDEMPERDLVS--WNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTF 137

Query: 198 PRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
             ++ AC   G    G  +H   ++FG   +  V+NA ++ Y K GD+  +  +F+ +  
Sbjct: 138 LSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSI 197

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQV 314
           K+L+S+N+M+  ++ +GL  +    F      G +PD     ++L +     ++R+   +
Sbjct: 198 KNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGI 257

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           HG ++  G   + CI  +L+ +YSK G+L+ +  +F  +   D ++W +++ A   H   
Sbjct: 258 HGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFG 317

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            +A+ +FE M   G+ PDH+TF  LL+AC+H G V+ G+  F  M ++Y I PR++HY+C
Sbjct: 318 RDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSC 377

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           MV+L GR+GL+ +AY +I E M  E S  VWGALL AC ++ +  +G  AA++LFELEP 
Sbjct: 378 MVDLLGRSGLLQDAYGLIKE-MPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPR 436

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           +  N+ +L  IY  +G   D  R+  ++  +GL
Sbjct: 437 DGRNYVMLSNIYSASGLWKDASRIRNLMKQKGL 469


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/425 (36%), Positives = 236/425 (55%), Gaps = 18/425 (4%)

Query: 115 RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174
           RL    + R +  +S++L+  YA+ G +  A QVFD+   ++ F   WN+L+   A    
Sbjct: 103 RLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFV--WNALLKALALADH 160

Query: 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG-----EKVHLDAVRFGFGFDG 229
            E+A+A    M    V  D +++   LKAC       V       ++H  AVR G+G   
Sbjct: 161 GEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHT 220

Query: 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
            V   L+D YAK G +  A +VF  +  ++++S+ +M+  Y  +    +A  +F+ M+ +
Sbjct: 221 HVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVAS 280

Query: 290 GFD--PDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
             D  P+ V I  IL   A  + L  G  +H ++LRRG +  + + N+L+ +Y K G L+
Sbjct: 281 DEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLE 340

Query: 345 QACWLFDHMP-QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400
               +FD +  +KDVVSWN++I     H   HEA+  FE M + GV P+ +TF+S+L AC
Sbjct: 341 AGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGAC 400

Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
           +H G V  G+RLF  MV+ Y ++PR EHYACMV+L GRAG +DEA  +I + M    SP 
Sbjct: 401 SHAGLVDEGKRLFESMVD-YNVTPRAEHYACMVDLLGRAGHLDEAVELI-QGMHIRPSPQ 458

Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
           VWG+LL AC +H +V   E A  +LF+LEP N  N+ LL  IY  A    +V  ++ +L 
Sbjct: 459 VWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLE 518

Query: 521 DRGLE 525
           +  LE
Sbjct: 519 EHALE 523


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 245/446 (54%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  V +   A+++  C +   ++ G  LH     +    +  +S+ L+ +Y   G ++ A
Sbjct: 255 GFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMA 314

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F   S  +     W+SLI GY++ G +  +++L+ +M   G+ P+  T   +L   +
Sbjct: 315 DCLF--WSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLS 372

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L LIR G+++H  ++R G     FV++AL+D+Y+K G I  A T+F    +KDL  +NS
Sbjct: 373 VLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNS 432

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M+ GY  +G    AF   R +   G  PD V + S+L   +   +L  G ++H +V++  
Sbjct: 433 MVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYC 492

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +     + N+L+ +Y K G L+ A  +F  M +++ V++N +I +   H+ + +AL +F+
Sbjct: 493 INSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFD 552

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M+RDG+ PD +TFV+LLS C+H G +  G  L+  M+  Y ISP  EHY+C+V+LY R 
Sbjct: 553 LMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRC 612

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +DEA+  +   M  E    V G LL AC +H  + + E   +++FE  P++     LL
Sbjct: 613 GKLDEAWCFM-SNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPGYHILL 671

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY +AG   DV R+  M+ +R L+
Sbjct: 672 SNIYADAGMWSDVTRIRTMIQERNLK 697



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 224/475 (47%), Gaps = 58/475 (12%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL----RKNKGISSKLLRLYATFGLI 142
           + V   T+  +++ C  L AV  G K+  ++ T++     R N  +   L+ ++A  G +
Sbjct: 151 VAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASGNARPNVFVQCALVDMFAKCGCL 210

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  VF+ M  R   A  W ++I G    G + + + L+  M  EG   D      V+ 
Sbjct: 211 DEARNVFESMQVRDLAA--WTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVIS 268

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC   G ++VG  +H  AV+ G   D +V NALVDMY KCG +  A  +F    +KD++S
Sbjct: 269 ACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVS 328

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           ++S++ GY  +G+   +  +F  MI  G +P+   ++SIL   S   L+R G ++H + +
Sbjct: 329 WSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSI 388

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           R G+E    + ++LI +YSK G +  A  +F     KD+  WNS++  ++ +     A  
Sbjct: 389 RHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFC 448

Query: 377 YFEQMERDGVLPDHLTFVSLLSAC-----------------------------------A 401
               +++ G+ PDH+T VS+L  C                                    
Sbjct: 449 ALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYC 508

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM--IVEKMEFEASP 459
             G ++V + +F +M E+  ++     Y  +++ +G+    D+A S   ++++       
Sbjct: 509 KCGFLEVAKEVFQLMTERNTVT-----YNILISSFGKHNHEDQALSFFDLMKRDGIAPDK 563

Query: 460 VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
           V + ALL  C   G +  G      +   + + P+ EH +  ++ +Y   G+LD+
Sbjct: 564 VTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEH-YSCIVDLYSRCGKLDE 617



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 210/397 (52%), Gaps = 20/397 (5%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           Q  + ASLL         +   +LH  +          + ++L+R YA  G +  A +VF
Sbjct: 52  QVVSHASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVF 111

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLG 208
           D M  R +FA  WN++I G  + G + +A+ +++ M  +G V  D FT+P V+KACA LG
Sbjct: 112 DGMPRRNSFA--WNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALG 169

Query: 209 LI----RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            +    +V E V  D        + FV  ALVDM+AKCG + +AR VF+ +  +DL ++ 
Sbjct: 170 AVAQGRKVWEMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWT 229

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           +M+ G +H G  +E  D+F  M   GF  D +  +++++    A  L++G  +HG  ++ 
Sbjct: 230 AMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKS 289

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ ++N+L+ +Y K G ++ A  LF     KDVVSW+S+I  +S++   + ++  F
Sbjct: 290 GASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLF 349

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL--FSVMVEKYGISPRVEHYACMVNLY 436
            +M   G+ P+  T  S+L   + L  ++ G+ +  FS+   ++G+       + +++LY
Sbjct: 350 CEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSI---RHGLERSEFVVSALIDLY 406

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            + GLI  A ++    +  +    +W +++    ++G
Sbjct: 407 SKQGLIRVAETIF--WLTLDKDLAIWNSMVAGYAVNG 441


>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
 gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
          Length = 429

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/407 (35%), Positives = 223/407 (54%), Gaps = 78/407 (19%)

Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
           M+++G+  ++F  P VLK C  +  ++ G  +H   +++    D +V+++L+DMY+KCG+
Sbjct: 1   MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF------------------------ 280
           + KAR VFDR+  KDL++ N+ML+GY  HG   E F                        
Sbjct: 61  VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120

Query: 281 -----------DIFRGMILNGFDPDPVA-------------------------------- 297
                       +F  MI NG +PD ++                                
Sbjct: 121 FAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPT 180

Query: 298 ---ISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
              IS++LA  + +   R G ++HG+ +   VE D+ + ++L+ +Y+K G + +A  LF 
Sbjct: 181 SATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFY 240

Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVK 407
            MP+++ V+WNS+I     H    EA+  F+QME+ +G   DHLTF ++L+AC+H G V+
Sbjct: 241 MMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVE 300

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467
            G+ LF +M +KY I PR+EHYACMV+L GRAG ++EAY MI +KM  +    VWGALL 
Sbjct: 301 HGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMI-KKMPVKPDLFVWGALLG 359

Query: 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514
           AC  HG++ + E AA+ L ELEP+N  N  L+  +Y +AG  ++V R
Sbjct: 360 ACRNHGDIGLAEVAARHLAELEPENAGNNMLMSNLYADAGSWENVSR 406



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 149/360 (41%), Gaps = 78/360 (21%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           + G+        S+L+ C  +  V+ G  LH +I    +  +  + S L+ +Y+  G ++
Sbjct: 3   KQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVE 62

Query: 144 EAHQVFDQMSNRTAFAF---------------------------------PWNSLISGYA 170
           +A +VFD+M  +   A                                   WNSLISG+A
Sbjct: 63  KARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFA 122

Query: 171 ELGEYEDAIALYFQMEEEGVEPD-----------------------------------QF 195
           + G+      ++  M   GVEPD                                     
Sbjct: 123 QKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSA 182

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   VL ACA +  +R G ++H  AV      D +V +ALVDMYAKCG I +A  +F  +
Sbjct: 183 TISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMM 242

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANASLLRIGAQV 314
             ++ +++NSM+ GY +HG   EA ++F  M  + G   D +  +++L   S    G   
Sbjct: 243 PERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACS--HAGMVE 300

Query: 315 HGWVLRRGVEWDLCIANSL------IVVYSKDGKLDQACWLFDHMPQK-DVVSWNSIIHA 367
           HG  L   ++    I   L      + +  + G L++A  +   MP K D+  W +++ A
Sbjct: 301 HGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGA 360



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 109/224 (48%), Gaps = 13/224 (5%)

Query: 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367
           ++ G  +H  +L+  +E D+ + +SLI +YSK G++++A  +FD M +KD+V+ N+++  
Sbjct: 26  VQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVEKARRVFDRMVEKDLVALNAMLSG 85

Query: 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424
              H    E     ++ME+ G+ P+ +T+ SL+S  A  G   +  ++F +M+   G+ P
Sbjct: 86  YGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISN-GVEP 144

Query: 425 RVEHYACMV-----NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG- 478
            V  +  ++     N    A    +A+  ++ +     S  +   +L AC    NV  G 
Sbjct: 145 DVISWTSVISGLVQNFRNEAAF--DAFKQMLGRGFLPTSATI-STVLAACATMANVRRGR 201

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522
           E     +     D+ +    L+ +Y   G + +   +  M+ +R
Sbjct: 202 EIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPER 245


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 241/472 (51%), Gaps = 40/472 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF  L++   + +    G  +H +        +  + + L+  YA+ G +D A+ VF+ +
Sbjct: 242 TFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMI 301

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                    WNS+++G+ + G  + A+ L+ +M  EGV P+  T   V+ ACA    + +
Sbjct: 302 EGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTL 361

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYI- 271
           G KV     R     +  V NA +DM+ KCG++  AR +FD +  +D++S+ +++ GY  
Sbjct: 362 GRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAK 421

Query: 272 --HHGLLVEAFD----------------------------IFRGMIL--NGFDPDPVAIS 299
              HG+  + FD                            IFR + L  +G  PD V + 
Sbjct: 422 MSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLL 481

Query: 300 SIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356
           S L   A    + IG  +HG++ +  ++ +  +A SLI +YSK G +++A  +F  +  K
Sbjct: 482 STLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNK 541

Query: 357 DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
           DV  W+++I     H +   A+  F  M+   V P+ +TF +LL AC+H G V  G+RLF
Sbjct: 542 DVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLF 601

Query: 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
             M   YG+ P+ +HY+CMV++ GRAG ++EA   I E M    S  VWGALL AC +HG
Sbjct: 602 DEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFI-EGMPLAPSASVWGALLGACCIHG 660

Query: 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           N+ + E A  +L E+EP N   + LL  +Y   G  + V  + + + D GL+
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLK 712



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 234/475 (49%), Gaps = 73/475 (15%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNK----GISSKLLRL--YATFGLIDEAHQVF 149
           +L + C   K ++        I   +LR NK      +S+L     +++F  +D A +VF
Sbjct: 144 ALFQQCTSFKQLKQ-------IHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVF 196

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLG 208
           DQ+     ++  WN LI   A   +   ++ ++ +M  +    P++FTFP ++KA A   
Sbjct: 197 DQIPQPNLYS--WNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERR 254

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSM 266
              VG+ VH  A++  FG D FVLN+L+  YA CG +  A  VF+ I   NKD++S+NSM
Sbjct: 255 CFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSM 314

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           +TG++  G   +A D+F  M   G  P+ V + S++   A    L +G +V  ++ R  +
Sbjct: 315 VTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEM 374

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--DH--------- 372
             +L + N+ I ++ K G+++ A  LFD+M ++DVVSW +II  ++K  +H         
Sbjct: 375 MMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDS 434

Query: 373 -----------------------EALIYFE--QMERDGVLPDHLTFVSLLSACAHLGSVK 407
                                  EAL  F   Q+ + G  PD +T +S LSACA LG++ 
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494

Query: 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVEKMEFEASPVVWGA 464
           +GE +    ++K  I         ++++Y ++G +++A   +  I  K  F     VW A
Sbjct: 495 IGEWIHG-YIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVF-----VWSA 548

Query: 465 LLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDVERV 515
           ++    +HG    GE A +   +++      N   F  L+    ++G +D+ +R+
Sbjct: 549 MIAGLAMHGR---GEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 245/463 (52%), Gaps = 42/463 (9%)

Query: 98  LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
           L+ C + +A  +  K+H  I  + L + + + + LL  Y    L+ +AH +FD+M  R  
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216
            +  W S+++ Y +       ++++  M   + ++PD F +  +LKACA L  +R+G++V
Sbjct: 69  VS--WASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQV 126

Query: 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLL 276
           H   V   F  D  V ++LVDMYAKCG    AR+VFD I  K  +S+ +ML+GY   GL 
Sbjct: 127 HARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLK 186

Query: 277 VEAFDIF---------------RGMILNGFD-----------------PDPVAISSIL-- 302
            EA ++F                G++ +G+                   DP+ +SS++  
Sbjct: 187 DEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGA 246

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            AN ++L +G Q+HG V+  G E  L I+N+L+ +Y+K   +  A  +F+ M  +DVVSW
Sbjct: 247 CANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSW 306

Query: 362 NSII---HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
            SII     H +  EAL  ++QM    + P+ +TFV L+ AC+H G V  G +LF  M+E
Sbjct: 307 TSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIE 366

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
            Y ISP ++ + C ++L  R+G ++EA  +I + M  +     W ALL AC  HGN  MG
Sbjct: 367 DYRISPSLQLFTCFLDLLSRSGHLNEAEDLI-KTMPHKPDEPTWAALLSACKHHGNTEMG 425

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
              A +L  L       + LL  +Y  AG+ + + RV +++ D
Sbjct: 426 VRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTD 468



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 179/404 (44%), Gaps = 73/404 (18%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +A+LL+ C  L ++  G ++H     +    +  + S L+ +YA  GL   A  VFD + 
Sbjct: 107 YATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSIL 166

Query: 154 NRTAFA-----------------------------FPWNSLISGYAELGEYEDAIALYFQ 184
            +T+ +                             + W +LISG  + G   D   ++ +
Sbjct: 167 VKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIE 226

Query: 185 MEEEGVE-PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243
           M  EGV+  D      V+ ACA L ++ +G+++H   +  G+    F+ NALVDMYAKC 
Sbjct: 227 MRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCS 286

Query: 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303
           DI+ AR VF+R+ ++D++S+ S++ G   HG   EA D++  M+L    P+ V    ++ 
Sbjct: 287 DILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIY 346

Query: 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSL------IVVYSKDGKLDQACWLFDHMPQKD 357
             S    G    G  L + +  D  I+ SL      + + S+ G L++A  L   MP K 
Sbjct: 347 ACS--HAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHK- 403

Query: 358 VVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
                                         PD  T+ +LLSAC H G+ ++G R+   ++
Sbjct: 404 ------------------------------PDEPTWAALLSACKHHGNTEMGVRIADRLL 433

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSM--IVEKMEFEASP 459
                 P    Y  + N+Y  AG  ++   +  ++  ME +  P
Sbjct: 434 SLNMHEPST--YVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKP 475


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 251/457 (54%), Gaps = 20/457 (4%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHG----IKLHRLIPTNLLRKNKG-----ISSKLL 133
           +   +   + T  S+ E C +L ++  G    +K  R +   ++R+        +   L+
Sbjct: 483 ISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALM 542

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
            LYA  G + + H+VF+ +  +T  +  WN+LIS +   G+ E+A+ L+ QM+ +G+ PD
Sbjct: 543 ELYADTGNLRDCHKVFETIKEKTILS--WNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 600

Query: 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
            ++    L AC  +   ++G ++H   ++ G  F+ FV NAL+DMYAKCG +  A  +F+
Sbjct: 601 SYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFE 659

Query: 254 RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRI 310
           +I  K L+++NSM+ G+  +G  VEA  +F  M +N    D +   S++   S    L  
Sbjct: 660 KIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEK 719

Query: 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--- 367
           G  VH  ++  G+  D  +  +L  +YSK G+L  A  +FD M ++ +VSW+ +I     
Sbjct: 720 GKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGM 779

Query: 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427
           H + +  +  F QM   G+ P+ +TF+ +LSAC+H G+V+ G+  F+ M E +G+ P+ +
Sbjct: 780 HGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHD 838

Query: 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487
           H+ACMV+L  RAG ++ AY  I+  + F A+  +WGALL  C +H  + + ++  + L +
Sbjct: 839 HFACMVDLLSRAGDLNGAY-QIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLD 897

Query: 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
           ++  +   + LL  IY   G  D   +V  M+  +GL
Sbjct: 898 VDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGL 934



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 201/427 (47%), Gaps = 72/427 (16%)

Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE 171
           +LH  +    L ++   S+KL+  YA  G+ + + +VFD      +F   W  LI  Y  
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFM--WGVLIKCYVW 423

Query: 172 LGEYEDAIALYF---------------------------------------------QME 186
            G +E+A++LY                                              QM 
Sbjct: 424 GGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMI 483

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN------------A 234
            E VEPD  T   V +AC+ LG +R+G    L  V+ G    GFV+             A
Sbjct: 484 SEAVEPDSVTMLSVTEACSELGSLRLGR---LGRVKEGRSVHGFVIRRAMDPELDFLGPA 540

Query: 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
           L+++YA  G++     VF+ I  K ++S+N++++ +  +G   EA  +F  M   G  PD
Sbjct: 541 LMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 600

Query: 295 ---PVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
                +  S     S  ++GAQ+HG++++ G   D  + N+LI +Y+K G +  A  +F+
Sbjct: 601 SYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF-VQNALIDMYAKCGFVHSANKMFE 659

Query: 352 HMPQKDVVSWNSIIHAHSKDH---EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
            + +K +V+WNS+I   S++    EA+  F+QM  + V  D LTF+S++ AC+HLG ++ 
Sbjct: 660 KIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEK 719

Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
           G+ +   ++  YG+         + ++Y + G +  A+  + ++M  E S V W  ++  
Sbjct: 720 GKWVHHKLI-MYGLRKDSYLDTALTDMYSKCGELQMAHG-VFDRMS-ERSIVSWSVMIAG 776

Query: 469 CYLHGNV 475
             +HG +
Sbjct: 777 YGMHGQI 783


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 245/441 (55%), Gaps = 22/441 (4%)

Query: 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164
             +  G  +H L+       +  + + ++ +Y+    +  A +VF+ +         WNS
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 165 LISGYAELGEYEDAIALYFQMEEEG---VEPDQFTFPRVLKACAGLGLIRVGEKVH-LDA 220
           LISG+   GE E A+  +  M  EG   VEP++ T   +LK+CA LG +     VH   +
Sbjct: 239 LISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYIS 298

Query: 221 VRFG---FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
            R        D  VL AL+DM+A+CG++  AR +FD +  K+++ +++M+ GY       
Sbjct: 299 SRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPE 358

Query: 278 EAFDIFRGMILNG------FDPDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLC 328
           EA  +FR M++ G        P+ V + S++A  S L   R  + +H + +  G++ D  
Sbjct: 359 EALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDAR 418

Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEALIYFEQMER 383
           IA++LI + +K G ++    +F  M +  + VVSW+S+I A   H +   AL  F +M  
Sbjct: 419 IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
            G  P+ +T++S+LSAC+H G V+ G+  F+ M + YG+SP  +HYAC+V+L GRAG +D
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
           EA+++I+  M  +A   +WG+LL AC+LHGN  +GE   +K+  L+ ++  +  LL  +Y
Sbjct: 539 EAHNVIL-NMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMY 597

Query: 504 GNAGRLDDVERVERMLVDRGL 524
            +AGR DDV R+   L   GL
Sbjct: 598 EDAGRWDDVVRMRVELRRSGL 618



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 202/416 (48%), Gaps = 40/416 (9%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF +LL+ C  L+ +   +++H  +    L  ++  ++ L+  Y   G    A QVFD+M
Sbjct: 54  TFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEM 113

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQME-------EEGVEPDQFTFPRVLKACA 205
              +     W +LIS Y+  G  ++A   + +M         E    D  +   ++ ACA
Sbjct: 114 PEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA 173

Query: 206 ---GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG--NKDL 260
              G   +R G  VH   V++GFG    + N++V MY+ C D+  A  VF+ I    +D+
Sbjct: 174 VGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDV 233

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSIL---ANASLLRIGAQV 314
           +S+NS+++G+  +G    A   F  M+  G    +P+ V + ++L   A    +   + V
Sbjct: 234 VSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 315 HGWVLRRG----VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH-- 368
           H ++  R     V  D+ +  +L+ ++++ G L  A  +FD +  K+VV W+++I  +  
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 369 -SKDHEALIYFEQMERDG------VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421
            S   EAL  F QM  +G      V P+ +T VS+++AC+ LG+ +        M+ KY 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSAS-----MIHKYA 408

Query: 422 ISPRVEHYA----CMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           ++  ++  A     ++++  + G I+    +  E  E   + V W +++ A  +HG
Sbjct: 409 VATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHG 464



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 29/333 (8%)

Query: 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           F WNSLI+  A     + A+  + +M+   V  + FTFP +LKACA L  +    +VH  
Sbjct: 19  FHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAY 77

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI--GNKDLISYNSMLTGYIHHGLLV 277
             R G   D F   ALVD Y KCG    A  VFD +  G+ D++S+ ++++ Y  +G + 
Sbjct: 78  LTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVD 137

Query: 278 EAFDIF-RGMILNGFDP------DPVAISSILA------NASLLRIGAQVHGWVLRRGVE 324
           EAF  F R   + G+D       D V++ ++++       ++ LR G+ VHG V++ G  
Sbjct: 138 EAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFG 197

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHAHSKDHE---ALIYFE 379
               + NS++ +YS    +  A  +F+ +P  Q+DVVSWNS+I     + E   AL  FE
Sbjct: 198 VSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFE 257

Query: 380 QMERDG---VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG---ISPRVEHYACMV 433
            M  +G   V P+ +T ++LL +CA LG V+    +   +  ++    ++  V     ++
Sbjct: 258 DMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALL 317

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
           +++ R G +  A   I + +E + + V W A++
Sbjct: 318 DMHARCGNLALARE-IFDGVEGK-NVVCWSAMI 348



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 4/214 (1%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T  S++  C +L A      +H+      L ++  I+S L+ + A  G I+   QVF +M
Sbjct: 384 TLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
              T     W+S+I      GE + A+ L+ +M   G EP++ T+  VL AC+  GL+  
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 213 GEKVHLDAVR-FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGY 270
           G+       + +G    G     LVD+  + G + +A  V   +  K DL  + S+L   
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAAC 563

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
             HG   +  +I    IL+  D + V    +LAN
Sbjct: 564 HLHG-NCKLGEIVEKKILS-LDSNSVGHHVLLAN 595



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 348 WLFDHMPQKDVVSWNSII--HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           W    +  KD   WNS+I  +A      AL +F +M+   V  ++ TF +LL ACA L  
Sbjct: 8   WYXCSISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAAL-- 65

Query: 406 VKVGERLFSVM-----VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
                RL   +     + + G++      A +V+ YG+ G    A  +  E  E     V
Sbjct: 66  ----RRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVV 121

Query: 461 VWGALLYACYLHGNV 475
            W AL+ A   +G V
Sbjct: 122 SWTALISAYSSNGCV 136


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 10/387 (2%)

Query: 142 IDEAHQVFDQM-SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
           ++E+ ++FD + S RTA +  W S+++GY+  G+ +  + L+  M ++G+E   FT    
Sbjct: 125 VEESRKLFDALGSGRTAAS--WTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIA 182

Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
           L ACA +  + VG+++H+  +R  F  +  V N+L+DMY  C +++ AR +FD I  ++L
Sbjct: 183 LHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNL 242

Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLR 320
           +++N+M+  Y     L+ A  + R M L        +I+S  A  + LR G QVHG  LR
Sbjct: 243 VTWNTMIAWYSQCNHLM-ALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALR 301

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIY 377
           R    DL + N+L+ +YSK G +  A  +F+ M  KD +SW S+I  +  +   +E++  
Sbjct: 302 RNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQL 361

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
           F  M   GV PDH+ F+ L+ AC H G V  G   F  M  +Y + P  E Y C+ NL  
Sbjct: 362 FTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLA 421

Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
           RAG + EA+ +I  +M F     VWGALL AC +H NV +G  AA+K+ E+ PD    + 
Sbjct: 422 RAGRLREAFDLI-HRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYV 480

Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
           LL  IY    +  +     R+L  RG+
Sbjct: 481 LLANIYAAGNKWGEYADTRRLL--RGI 505



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 176/331 (53%), Gaps = 17/331 (5%)

Query: 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 188
           ++ L++     G +  A  VFD+M +R   A  W +++SGYA  G +  A+ L+ +M   
Sbjct: 6   ATTLIKSLCAGGALRHARAVFDEMPDRDVVA--WTAMLSGYASNGCHSYALDLFRRMLAA 63

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVG---EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
           GV P++FT   VL AC G G    G     +H  AVR G     +V+NAL++ YA C + 
Sbjct: 64  GVGPNEFTLSSVLTACRG-GAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEG 122

Query: 246 V---KARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
           V   ++R +FD +G+ +   S+ SM+ GY   G       +F+ MI +G +  P   S  
Sbjct: 123 VGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIA 182

Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
           L   A+ + L +G Q+H   LR+    +L +ANSLI +Y     L  A  LFD +P++++
Sbjct: 183 LHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNL 242

Query: 359 VSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
           V+WN++I  +S+ +  L+  + +    + P+  T  S+ SACA L S++ G+++    + 
Sbjct: 243 VTWNTMIAWYSQCNH-LMALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALR 301

Query: 419 K-YGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           + YG    ++    +V++Y + G I  A  M
Sbjct: 302 RNYG--KDLQMCNALVDMYSKCGSIANAKKM 330



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 173/373 (46%), Gaps = 57/373 (15%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           +Q  ++ +Q+GI +   T +  L  C  +  +  G +LH L        N  +++ L+ +
Sbjct: 161 LQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDM 220

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y +   + +A ++FD++  R      WN++I+ Y++       +AL   + E  ++P+ F
Sbjct: 221 YCSCANLLDARRLFDEIPERNLVT--WNTMIAWYSQCNHL---MALQL-LREMNLQPNCF 274

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255
           T   +  ACAGL  +R G++VH  A+R  +G D  + NALVDMY+KCG I  A+ +F+ +
Sbjct: 275 TLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMM 334

Query: 256 GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVH 315
             KD +S+ SM+TGY  +G   E+  +F  MI  G  PD V    ++   +    G    
Sbjct: 335 DYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACN--HGGLVDE 392

Query: 316 GWVLRRGV--EWDL--------CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
           GW   R +  E++L        C+ N L    ++ G+L +A  L   MP           
Sbjct: 393 GWNFFRSMTSEYNLQPNKEIYGCVTNLL----ARAGRLREAFDLIHRMP----------- 437

Query: 366 HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP- 424
                                 PD   + +LL AC    +V++G      ++E   I+P 
Sbjct: 438 --------------------FAPDETVWGALLGACKMHKNVELGRLAARKIIE---INPD 474

Query: 425 RVEHYACMVNLYG 437
           R + Y  + N+Y 
Sbjct: 475 RAKTYVLLANIYA 487


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 237/450 (52%), Gaps = 13/450 (2%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V NG      T  ++L++C +   +    ++H L     L  +  + +  + +Y+  G  
Sbjct: 176 VGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDT 235

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A +VFD M  R   +  W  LISGY + G + DA+AL+ +M+   V P+  TF  +L 
Sbjct: 236 VGASKVFDFMPVRDVVS--WTGLISGYMKAGLFNDAVALFLRMD---VAPNAATFVSILG 290

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC  LG + +G+ +H    ++  G +  V N L+DMY KC  +  A+ +FD I  KD++S
Sbjct: 291 ACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVS 350

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVL 319
           + SM++G + +    E+ D+F  M+ +GF+PD V ++S+L   A+  LL  G  VH ++ 
Sbjct: 351 WTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYID 410

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALI 376
              ++WD+ I  SLI +Y+K G ++ A  +F+ +P K++ +WN+ I     +    EAL 
Sbjct: 411 HSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALK 470

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNL 435
            F  +   G  P+ +TF+++ SAC H G V  G   F  M    Y +SP +EHY CMV+L
Sbjct: 471 QFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDL 530

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495
             RA L++EA  +I  KM       + GALL A   +GNV +     + +   E      
Sbjct: 531 LCRAELVEEAMELI-NKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQESGV 589

Query: 496 FELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + LL   Y N  +  +V  V R++ ++G+ 
Sbjct: 590 YVLLSNWYANNKKWAEVRSVRRLMKEKGIS 619



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 4/293 (1%)

Query: 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218
           +FP N +ISGY        AI +Y  +   G  PD +T P VLK+CA    I   +++H 
Sbjct: 149 SFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHT 208

Query: 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE 278
            AV+     D FV N+ V +Y+ CGD V A  VFD +  +D++S+  +++GY+  GL  +
Sbjct: 209 LAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFND 268

Query: 279 AFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           A  +F  M +       V+I         L +G  +HG V +     +L ++N+L+ +Y 
Sbjct: 269 AVALFLRMDVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYV 328

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVS 395
           K   +  A  LFD +P+KD+VSW S+I     +    E+L  F +M   G  PD +   S
Sbjct: 329 KCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTS 388

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
           +LSACA LG +  G R     ++   I   V     ++++Y + G I+ A  M
Sbjct: 389 VLSACASLGLLDYG-RWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQM 440


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/447 (32%), Positives = 239/447 (53%), Gaps = 17/447 (3%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G+     TF +++  C     +E G +   L           I + ++ +Y   G+  EA
Sbjct: 137 GLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREA 196

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
            ++F  M++R   +  W +LISGY   G+ + A+  + ++   GV  D      +L  C+
Sbjct: 197 ERMFSAMTDRNLIS--WTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCS 254

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
               + +G ++H   ++ G+     +  ALVD+YAKCG+++ AR VFD + +K + S+N+
Sbjct: 255 ECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNA 314

Query: 266 MLTGYIHHGLLVEA-----FDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
           +L G++ +    E      F+ FR   L+G  PD V  S +L   AN S L  G   H +
Sbjct: 315 ILAGFMENSRDGEEDPIVLFNHFR---LDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAY 371

Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
            ++ G E DL +AN++I +Y+K G +++A  +F+ M   D +SWN++I A   H +  + 
Sbjct: 372 AIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKV 431

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
           L+ FE+M +    PD +T +S+L AC + G  + G  LF+VM  KYGI P +EHYACMV+
Sbjct: 432 LLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVD 491

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
           L GRAG + EA   I+ K  F  S ++W  L+  C L G+   G+ A++ L EL P    
Sbjct: 492 LLGRAGHLSEAMD-IINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAG 550

Query: 495 NFELLIKIYGNAGRLDDVERVERMLVD 521
           ++ L+  +Y     LD+  +V  ++ D
Sbjct: 551 SYILVSNMYAGERMLDEAAKVRTVMND 577



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 199/398 (50%), Gaps = 13/398 (3%)

Query: 84  QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           ++G  +   T + +L+ C        G + H  +      +N  + + L+ +Y    L  
Sbjct: 34  KSGEALNEHTCSVILQACSSPDYRIFGQQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFG 93

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
           +A +VFD M+ +    F  N +I  YA  G  E AI ++  M   G++P+ +TF  ++ A
Sbjct: 94  DAEKVFDSMACKDVRCF--NFMILEYARAGNGEKAIRVFINMLNAGLQPNDYTFTNIISA 151

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           C G   I  GE+    + ++GF  +  + NA+++MY K G   +A  +F  + +++LIS+
Sbjct: 152 CDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREAERMFSAMTDRNLISW 211

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLR 320
            ++++GY   G   +A D F  + L G + D   +++IL   S  R   +G Q+HG V++
Sbjct: 212 TALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIK 271

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE--AL 375
            G    + I  +L+ +Y+K G L  A  +FD +  K + S+N+I+     +S+D E   +
Sbjct: 272 LGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEEDPI 331

Query: 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435
           + F     DG+ PD +TF  LLS  A+  ++  G R +     K G    +     ++ +
Sbjct: 332 VLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRG-RCYHAYAIKTGFEADLSVANAVITM 390

Query: 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
           Y + G I+EA+ M    +  +   + W A++ A  LHG
Sbjct: 391 YAKCGSIEEAHRMF--NVMNDHDSISWNAMISAYALHG 426



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 138/286 (48%), Gaps = 7/286 (2%)

Query: 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220
            W SLI GY +  E+E A+ +  +M + G   ++ T   +L+AC+       G++ H   
Sbjct: 8   TWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFHCFV 67

Query: 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280
           ++ GF  +  V  +L+ MY +      A  VFD +  KD+  +N M+  Y   G   +A 
Sbjct: 68  IKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAI 127

Query: 281 DIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
            +F  M+  G  P+    ++I++       +  G Q  G   + G   +  I N++I +Y
Sbjct: 128 RVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMY 187

Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFV 394
            K G   +A  +F  M  ++++SW ++I  +++     +A+  F ++   GV  D     
Sbjct: 188 GKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLT 247

Query: 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           ++L  C+   ++++G ++  +++ K G +  V     +V+LY + G
Sbjct: 248 TILDGCSECRNLELGLQIHGLVI-KLGYACAVNIGTALVDLYAKCG 292


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 245/446 (54%), Gaps = 9/446 (2%)

Query: 86  GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
           G  V +   A+++  C +   ++ G  LH     +    +  +S+ L+ +Y   G ++ A
Sbjct: 250 GFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMA 309

Query: 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
             +F   S  +     W+SLI GY++ G +  +++L+ +M   G+ P+  T   +L   +
Sbjct: 310 DCLF--WSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLS 367

Query: 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265
            L LIR G+++H  ++R G     FV++AL+D+Y+K G I  A T+F    +KDL  +NS
Sbjct: 368 VLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNS 427

Query: 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRG 322
           M+ GY  +G    AF   R +   G  PD V + S+L   +   +L  G ++H +V++  
Sbjct: 428 MVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYC 487

Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
           +     + N+L+ +Y K G L+ A  +F  M +++ V++N +I +   H+ + +AL +F+
Sbjct: 488 INSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFD 547

Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
            M+RDG+ PD +TFV+LLS C+H G +  G  L+  M+  Y ISP  EHY+C+V+LY R 
Sbjct: 548 LMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRC 607

Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
           G +DEA+  +   M  E    V G LL AC +H  + + E   +++FE  P++     LL
Sbjct: 608 GKLDEAWCFM-SNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPGYHILL 666

Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
             IY +AG   DV R+  M+ +R L+
Sbjct: 667 SNIYADAGMWSDVTRIRTMIQERNLK 692



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 208/395 (52%), Gaps = 16/395 (4%)

Query: 90  QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
           Q  + ASLL         +   +LH  +          + ++L+R YA  G +  A +VF
Sbjct: 47  QVVSHASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVF 106

Query: 150 DQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLG 208
           D M  R +FA  WN++I G  + G + +A+ +++ M  +G V  D FT+P V+KACA LG
Sbjct: 107 DGMPRRNSFA--WNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALG 164

Query: 209 LI----RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
            +    +V E V  D        + FV  ALVDM+AKCG + +AR VF+ +  +DL ++ 
Sbjct: 165 AVAQGRKVWEMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWT 224

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA---NASLLRIGAQVHGWVLRR 321
           +M+ G +H G  +E  D+F  M   GF  D +  +++++    A  L++G  +HG  ++ 
Sbjct: 225 AMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKS 284

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYF 378
           G   D+ ++N+L+ +Y K G ++ A  LF     KDVVSW+S+I  +S++   + ++  F
Sbjct: 285 GASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLF 344

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
            +M   G+ P+  T  S+L   + L  ++ G+ +    + ++G+       + +++LY +
Sbjct: 345 CEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSI-RHGLERSEFVVSALIDLYSK 403

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            GLI  A ++    +  +    +W +++    ++G
Sbjct: 404 QGLIRVAETIF--WLTLDKDLAIWNSMVAGYAVNG 436



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 223/475 (46%), Gaps = 58/475 (12%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL----RKNKGISSKLLRLYATFGLI 142
           + V   T+  +++ C  L AV  G K+  ++  ++     R N  +   L+ ++A  G +
Sbjct: 146 VAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNARPNVFVQCALVDMFAKCGCL 205

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           DEA  VF+ M  R   A  W ++I G    G + + + L+  M  EG   D      V+ 
Sbjct: 206 DEARNVFESMQVRDLAA--WTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVIS 263

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           AC   G ++VG  +H  AV+ G   D +V NALVDMY KCG +  A  +F    +KD++S
Sbjct: 264 ACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVS 323

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVL 319
           ++S++ GY  +G+   +  +F  MI  G +P+   ++SIL   S   L+R G ++H + +
Sbjct: 324 WSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSI 383

Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALI 376
           R G+E    + ++LI +YSK G +  A  +F     KD+  WNS++  ++ +     A  
Sbjct: 384 RHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFC 443

Query: 377 YFEQMERDGVLPDHLTFVSLLSAC-----------------------------------A 401
               +++ G+ PDH+T VS+L  C                                    
Sbjct: 444 ALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYC 503

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM--IVEKMEFEASP 459
             G ++V + +F +M E+  ++     Y  +++ +G+    D+A S   ++++       
Sbjct: 504 KCGFLEVAKEVFQLMTERNTVT-----YNILISSFGKHNHEDQALSFFDLMKRDGIAPDK 558

Query: 460 VVWGALLYACYLHGNVCMGETAAQKL---FELEPDNEHNFELLIKIYGNAGRLDD 511
           V + ALL  C   G +  G      +   + + P+ EH +  ++ +Y   G+LD+
Sbjct: 559 VTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEH-YSCIVDLYSRCGKLDE 612


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/408 (33%), Positives = 233/408 (57%), Gaps = 11/408 (2%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQME 186
           +++ +L  Y+  G ++EA +VF +M          WN++I    +  E  +A+ L+ +M 
Sbjct: 176 VNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMV 235

Query: 187 EEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC-GDI 245
             G++ D FT   VL A   +  +  G + H   ++ GF  +  V + L+D+Y+KC G +
Sbjct: 236 RRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGM 295

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVE-AFDIFRGMILNGFDPDP---VAISSI 301
           V+ R VF+ I   DL+ +N+M++G+  +  L E     FR M  NGF PD    V ++S 
Sbjct: 296 VECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSA 355

Query: 302 LANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360
            +N S   +G QVH   ++  + ++ + + N+L+ +YSK G +  A  +FD MP+ ++VS
Sbjct: 356 CSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVS 415

Query: 361 WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417
            NS+I     H  + E+L  FE M +  + P+ +TF+++LSAC H G V+ G++ F++M 
Sbjct: 416 LNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMK 475

Query: 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477
           E++ I P  EHY+CM++L GRAG + EA   I+E M F    + W  LL AC  HGNV +
Sbjct: 476 ERFRIEPEAEHYSCMIDLLGRAGKLKEA-ERIIETMPFNPGSIEWATLLGACRKHGNVEL 534

Query: 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
              AA +  +LEP N   + +L  +Y +A R ++   V+R++ +RG++
Sbjct: 535 AVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVK 582



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 234/510 (45%), Gaps = 81/510 (15%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +Q    +Q +TF +LL+ C   + +  G  LH L   +L+  +  +S+    LY+  G +
Sbjct: 1   MQCTFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSL 60

Query: 143 DEAHQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELG 173
             A   FD       F++                              +N+LI+ YA+ G
Sbjct: 61  HNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRG 120

Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACA-GLGLIRVGEKVHLDAVRFGFGFDGFVL 232
           E   A+ L+ ++ E     D FT   V+ AC   +GL+R   ++H   V  G+     V 
Sbjct: 121 ECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVR---QLHCFVVVCGYDCYASVN 177

Query: 233 NALVDMYAKCGDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289
           NA++  Y++ G + +AR VF  +   G +D +S+N+M+     H   +EA ++FR M+  
Sbjct: 178 NAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRR 237

Query: 290 GFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSK-DGKLDQ 345
           G   D   ++S+L   + ++    G Q HG +++ G   +  + + LI +YSK  G + +
Sbjct: 238 GLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVE 297

Query: 346 ACWLFDHMPQKDVVSWNSIIHAHSK----DHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
              +F+ +   D+V WN++I   S+      + +  F +M+ +G  PD  +FV + SAC+
Sbjct: 298 CRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACS 357

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY--------------- 446
           +L S  VG+++ ++ ++      RV     +V +Y + G + +A                
Sbjct: 358 NLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLN 417

Query: 447 SMI---------VEKM---------EFEASPVVWGALLYACYLHGNVCMGE---TAAQKL 485
           SMI         VE +         +   + + + A+L AC   G V  G+      ++ 
Sbjct: 418 SMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKER 477

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERV 515
           F +EP+ EH +  +I + G AG+L + ER+
Sbjct: 478 FRIEPEAEH-YSCMIDLLGRAGKLKEAERI 506


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 244/446 (54%), Gaps = 24/446 (5%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T +++L  C  L++++ G + H  I    +  +  + S L  LY+  G +++A + F ++
Sbjct: 170 TLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRI 229

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
             +   +  W S +S  A+ G     + L+ +M    ++P++FT    L  C  +  + +
Sbjct: 230 REKNVIS--WTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLEL 287

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY-- 270
           G +V+   ++FG+  +  V N+L+ +Y K G IV+A  +F+R+ +  ++++N+M+ G+  
Sbjct: 288 GTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQ 347

Query: 271 -----------IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS-LLRI--GAQVHG 316
                       H G   EA  +F  + L+G  PD   +SS+L+  S +L I  G Q+H 
Sbjct: 348 MMELTKDNLSACHRG--SEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHA 405

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
             ++ G   D+ ++ SLI +YSK G +++A   F  M  + +++W S+I     H    +
Sbjct: 406 QTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQ 465

Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
           AL  FE M   GV P+ +TFV +LSAC+H G V      F +M +KY I P ++HY CMV
Sbjct: 466 ALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMV 525

Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
           +++ R G +++A + I +KM +E S  +W   +  C  HGN+ +G  AA++L  L+P + 
Sbjct: 526 DMFVRLGRLEQALNFI-KKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDP 584

Query: 494 HNFELLIKIYGNAGRLDDVERVERML 519
             + LL+ +Y +A R +DV RV +M+
Sbjct: 585 ETYVLLLNMYLSAERFEDVSRVRKMM 610



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 197/397 (49%), Gaps = 22/397 (5%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           +  LL+ C   ++      +H  +       N  + S L+ +YA  G +++A +VFD M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            R   A  W +L+ G+ +  + + AI ++ +M   G  P  +T   VL AC+ L  +++G
Sbjct: 130 RRNVVA--WTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLG 187

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           ++ H   +++   FD  V +AL  +Y+KCG +  A   F RI  K++IS+ S ++    +
Sbjct: 188 DQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADN 247

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIA 330
           G  V+   +F  MI     P+   ++S L+       L +G QV+   ++ G E +L + 
Sbjct: 248 GAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVR 307

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH------SKDH--------EALI 376
           NSL+ +Y K G + +A  LF+ M    +V+WN++I  H      +KD+        EAL 
Sbjct: 308 NSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALK 367

Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
            F ++   G+ PD  T  S+LS C+ + +++ GE++ +  + K G    V     ++++Y
Sbjct: 368 LFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTI-KTGFLSDVIVSTSLISMY 426

Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473
            + G I+ A    +E      + + W +++     HG
Sbjct: 427 SKCGSIERASKAFLEMS--TRTMIAWTSMITGFSQHG 461


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 234/437 (53%), Gaps = 16/437 (3%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA--TFGLIDEAHQVFDQMS 153
           +LL+ C  LK +    K+H  +  + L  +  I++KLL   A    G +  A  +F QM 
Sbjct: 9   ALLQGCNSLKRLR---KIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQME 65

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQFTFPRVLKACAGLGLIRV 212
                A  WNS+I G+A+     DAI  Y QM  +    PD FTF  VLKAC  +   R 
Sbjct: 66  CPQTEA--WNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERK 123

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            ++VH   +R G+  D  V   LV  Y+  G +  AR VFD++  +DL+++N+M++ +  
Sbjct: 124 CKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQ 183

Query: 273 HGLLVEAFDIFRGMILNGFDPDP---VAISSILANASLLRIGAQVHGWVLRRGVEWDLCI 329
            GL  EA   +  M     D D    V + S  A+   L IG Q+H +    G++  L +
Sbjct: 184 QGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYV 243

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGV 386
            N+LI +Y+K G LDQA  +FD M +KD+ +WNS+I     H +  EA+  F+QM    +
Sbjct: 244 GNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARI 303

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TF+ LL  C+H G V+ G + F++M  K+ + P V+HY C+V+LYGRAG +D+A 
Sbjct: 304 QPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKAL 363

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
            ++      ++  V+W  LL +C +H NV +GE A  +L EL   +  +  LL  IY   
Sbjct: 364 EIVSNSSHNDS--VLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGE 421

Query: 507 GRLDDVERVERMLVDRG 523
                V R+ +M+  +G
Sbjct: 422 KDKAGVARMRKMIKSQG 438



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 195/402 (48%), Gaps = 50/402 (12%)

Query: 41  NRITTFSSYPKSSP---TPLLTNQKAFPKTKLQALDSIIQDLESS-------------VQ 84
           N++  F +   S       LL +Q   P+T  +A +SII+    S             V 
Sbjct: 40  NKLLNFCAISVSGSLAYAQLLFHQMECPQT--EAWNSIIRGFAQSSSPIDAIVFYNQMVC 97

Query: 85  NGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
           +  ++  T TF+ +L+ C ++KA     ++H  +       +  + + L++ Y+  GL+ 
Sbjct: 98  DSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVC 157

Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
            A QVFD+M  R   A  WN++IS +++ G +++A+  Y QM  E V+ D FT   ++ +
Sbjct: 158 IARQVFDKMPARDLVA--WNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISS 215

Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISY 263
           CA LG + +G ++H  A   G     +V NAL+DMYAKCG + +A  +FDR+  KD+ ++
Sbjct: 216 CAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTW 275

Query: 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323
           NSM+ GY  HG   EA   F+ M+     P+PV    +L   S        H  +++ GV
Sbjct: 276 NSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS--------HQGLVQEGV 327

Query: 324 EWDLCIAN------------SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371
           ++   +++             L+ +Y + GKLD+A  +  +    D V W  I+    K 
Sbjct: 328 KYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWR-ILLGSCKI 386

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSA--CAHLGSVKVGER 411
           H+ +   E      +  + L+ +   SA  C  L ++  GE+
Sbjct: 387 HKNVTIGE------IAMNRLSELGATSAGDCILLATIYAGEK 422



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 297 AISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI--VVYSKDGKLDQACWLFDHMP 354
           AI ++L   + L+   ++H  V+  G+   + IAN L+     S  G L  A  LF  M 
Sbjct: 6   AILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQME 65

Query: 355 QKDVVSWNSIIHAHSKDH---EALIYFEQMERDGV-LPDHLTFVSLLSACAHLGSVKVGE 410
                +WNSII   ++     +A++++ QM  D   +PD  TF  +L AC  + + +  +
Sbjct: 66  CPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCK 125

Query: 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALL 466
            +   ++ + G    V     +V  Y   GL+       + +  F+  P    V W A++
Sbjct: 126 EVHGSVI-RCGYDADVIVCTNLVKCYSAMGLV------CIARQVFDKMPARDLVAWNAMI 178

Query: 467 YACY 470
            +C+
Sbjct: 179 -SCF 181


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 240/448 (53%), Gaps = 10/448 (2%)

Query: 79  LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138
           L S ++ G +V   TF S L  C+  +  + G  LH L+  + L  N+ I + L+ +Y  
Sbjct: 451 LCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGK 510

Query: 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
            G +  + +V  QM  R   A  WN+LI GYAE  + + A+A +  +  EGV  +  T  
Sbjct: 511 IGGMSTSRRVLLQMPRRDVVA--WNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVV 568

Query: 199 RVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257
            VL AC   G L+  G+ +H   V  GF  D  V N+L+ MYAKCGD+  ++ +F+ + N
Sbjct: 569 SVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN 628

Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI---GAQV 314
           + +I++N++L    HHG   E   +   M   G   D  + S  L+ A+ L +   G Q+
Sbjct: 629 RSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQL 688

Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
           HG  ++ G E D  I N+   +YSK G++ +   +      + + SWN +I A   H   
Sbjct: 689 HGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYF 748

Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
            E    F +M   G+ P H+TFVSLL+AC+H G V  G   + ++ + +G+ P +EH  C
Sbjct: 749 EEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCIC 808

Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
           +++L GR+G + EA + I  KM  + + +VW +LL +C +H ++  G  AA+ L +LEP+
Sbjct: 809 VIDLLGRSGRLAEAETFI-SKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPE 867

Query: 492 NEHNFELLIKIYGNAGRLDDVERVERML 519
           ++  F L   ++   GR +DVE V + +
Sbjct: 868 DDSVFVLSSNMFATTGRWEDVENVRKQM 895



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 203/388 (52%), Gaps = 12/388 (3%)

Query: 86  GITVQTETFASLLETCYQLKAV-EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           GI   +   ASL+  C +  ++   G+++H  +  + L  +  +S+ +L LY  +GL+  
Sbjct: 154 GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 213

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           + +VF++M +R   +  W SL+ GY++ GE E+ I +Y  M  EGVE ++ +   V+ +C
Sbjct: 214 SRKVFEEMPDRNVVS--WTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSC 271

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             L    +G ++    ++ G      V N+L+ M+   G++  A  +F++I  +D IS+N
Sbjct: 272 GLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWN 331

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASLLRIGAQVHGWVLRR 321
           S++  Y  +G + E+  IF  M     + +   +S   S+L +    + G  +HG V++ 
Sbjct: 332 SIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKM 391

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH---EALIYF 378
           G +  +C+ N+L+ +Y+  G+ ++A  +F  MP KD++SWNS++ +   D    +AL   
Sbjct: 392 GFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGIL 451

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M R G   +++TF S L+AC        G  L  ++V       ++   A +V++YG+
Sbjct: 452 CSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNA-LVSMYGK 510

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALL 466
            G +  +  ++++    +   V W AL+
Sbjct: 511 IGGMSTSRRVLLQMPRRDV--VAWNALI 536



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 193/371 (52%), Gaps = 12/371 (3%)

Query: 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW 162
           Q+     G  LH L    L+R +   ++ L+ +Y  FG +  A  +FD+M  R   +  W
Sbjct: 70  QITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVS--W 127

Query: 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAV 221
           N+++SG   +G Y + +  + +M + G++P  F    ++ AC   G + R G +VH    
Sbjct: 128 NTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVA 187

Query: 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281
           + G   D +V  A++ +Y   G +  +R VF+ + +++++S+ S++ GY   G   E  D
Sbjct: 188 KSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVID 247

Query: 282 IFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
           I++ M   G + +  ++S ++++  LL+   +G Q+ G V++ G+E  L + NSLI ++ 
Sbjct: 248 IYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFG 307

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVS 395
             G +D A ++F+ + ++D +SWNSI+ A++++    E+   F  M R     +  T  +
Sbjct: 308 NMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVST 367

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455
           LLS    +   K G  +  ++V K G    V     ++ +Y  AG  +EA  ++ ++M  
Sbjct: 368 LLSVLGDVDHQKWGRGIHGLVV-KMGFDSVVCVCNTLLRMYAGAGRSEEA-DLVFKQMPT 425

Query: 456 EASPVVWGALL 466
           +   + W +L+
Sbjct: 426 K-DLISWNSLM 435



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 205/467 (43%), Gaps = 45/467 (9%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           V + T ++LL     +   + G  +H L+          + + LLR+YA  G  +EA  V
Sbjct: 360 VNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLV 419

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F QM  +   +  WNSL++ +   G   DA+ +   M   G   +  TF   L AC    
Sbjct: 420 FKQMPTKDLIS--WNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPE 477

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
               G  +H   V  G   +  + NALV MY K G +  +R V  ++  +D++++N+++ 
Sbjct: 478 FFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIG 537

Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVE 324
           GY  +    +A   F+ + + G   + + + S+L+       LL  G  +H +++  G E
Sbjct: 538 GYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFE 597

Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM 381
            D  + NSLI +Y+K G L  +  LF+ +  + +++WN+I+ A   H    E L    +M
Sbjct: 598 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKM 657

Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERL---------------FSVMVEKYG----- 421
              G+  D  +F   LSA A L  ++ G++L               F+   + Y      
Sbjct: 658 RSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEI 717

Query: 422 ------ISPRVEH----YACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYAC 469
                 + P V      +  +++  GR G  +E      E +E    P  V + +LL AC
Sbjct: 718 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTAC 777

Query: 470 YLHGNVCMGET---AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513
              G V  G        K F LEP  EH    +I + G +GRL + E
Sbjct: 778 SHGGLVDQGLAYYDMIAKDFGLEPAIEHCI-CVIDLLGRSGRLAEAE 823



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 136/250 (54%), Gaps = 10/250 (4%)

Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
           N L++MY K G +  AR +FD++  ++ +S+N+M++G +  GL +E  + F+ M   G  
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIK 156

Query: 293 PDPVAISSILA----NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348
           P    I+S++     + S+ R G QVHG+V + G+  D+ ++ +++ +Y   G +  +  
Sbjct: 157 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 216

Query: 349 LFDHMPQKDVVSWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405
           +F+ MP ++VVSW S++  +S   +  E +  ++ M  +GV  +  +   ++S+C  L  
Sbjct: 217 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKD 276

Query: 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465
             +G ++   ++ K G+  ++     +++++G  G +D  Y+  +     E   + W ++
Sbjct: 277 ESLGRQIIGQVI-KSGLESKLAVENSLISMFGNMGNVD--YANYIFNQISERDTISWNSI 333

Query: 466 LYACYLHGNV 475
           + A   +G++
Sbjct: 334 VAAYAQNGHI 343


>gi|449457630|ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
 gi|449529896|ref|XP_004171934.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
          Length = 544

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 245/448 (54%), Gaps = 21/448 (4%)

Query: 89  VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
           +   T  ++L  C  L   ++G  +H LI            + +L +Y+  GL+D++ +V
Sbjct: 90  LTAHTLTAVLAACSALPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKV 149

Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
           F++M  R   A  WNSL+S +   G  E+A+ ++ +M+ E VE  +FT   VLKACA L 
Sbjct: 150 FEEMEMRDVVA--WNSLLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALE 207

Query: 209 LIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIG-NKDLISYNSM 266
             R+G++VH   V      D  VL  ALVD Y+  G I +A  V+  +   KD I  NS+
Sbjct: 208 DYRLGKQVH--GVVVVMNRDMLVLGTALVDFYSSVGCISEAVKVYTSLNCRKDDIILNSL 265

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGV 323
           ++G + +    EAF +   M      P+ +A++S L   +  S L IG Q+H   +R G+
Sbjct: 266 ISGCVRNKRYEEAFSLMSKM-----RPNAIALTSALHACSENSDLWIGKQIHCVSVRHGL 320

Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME- 382
             +  + N L+ +Y+K GK+  A  +FD M  K+VVSW+S+I  +    + L  FE  + 
Sbjct: 321 TSNTQLCNILLDMYAKCGKVLNARAVFDGMCHKNVVSWSSMIQTYGSHGDGLKAFELFKI 380

Query: 383 ----RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
               R GVLP+ +TF+S+LSAC H G V+ G+  F +  EKY      EHYAC +++ GR
Sbjct: 381 MVEGRTGVLPNSVTFLSVLSACGHSGLVQQGQECFYLAKEKYSSCLGPEHYACFIDVLGR 440

Query: 439 AGLIDEAYSMI--VEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
           AG IDE +S+   +E    + +  +W A+L AC  + +V  GE AA+KL +L+P+   N+
Sbjct: 441 AGKIDEVWSLFHDMEMCGVKITSKIWAAVLNACNHNQDVSRGEFAAKKLLQLDPNKAGNY 500

Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGL 524
            L    Y + G+ D V+ + R++  +GL
Sbjct: 501 VLASNFYASIGKWDSVDELRRLMKAKGL 528



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 168/340 (49%), Gaps = 14/340 (4%)

Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
           GL   AHQ+FD++      +   NSL++ Y       DA +L+ +M          T   
Sbjct: 40  GLCYLAHQLFDELPQTDIPSL--NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTA 97

Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNK 258
           VL AC+ L   + G+ VH   ++ G  + G V   A++DMY+KCG +  +  VF+ +  +
Sbjct: 98  VLAACSALPTSQYGQLVHGLIIKTG-AYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMR 156

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVH 315
           D++++NS+L+ ++  GL  EA ++F  M     +     + S+L   + L   R+G QVH
Sbjct: 157 DVVAWNSLLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGKQVH 216

Query: 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHAHSKDHEA 374
           G V+    +  L +  +L+  YS  G + +A  ++  +  +KD +  NS+I    ++   
Sbjct: 217 GVVVVMNRDM-LVLGTALVDFYSSVGCISEAVKVYTSLNCRKDDIILNSLISGCVRNKRY 275

Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
              F  M +  + P+ +   S L AC+    + +G+++  V V ++G++   +    +++
Sbjct: 276 EEAFSLMSK--MRPNAIALTSALHACSENSDLWIGKQIHCVSV-RHGLTSNTQLCNILLD 332

Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGN 474
           +Y + G +  A + + + M    + V W +++     HG+
Sbjct: 333 MYAKCGKVLNARA-VFDGM-CHKNVVSWSSMIQTYGSHGD 370


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 251/446 (56%), Gaps = 10/446 (2%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           +G+     T   +L+ C  +  +E G ++H  I       +  + + L+ LYA  G +++
Sbjct: 163 SGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQ 222

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  VF+ + +R   +  W S+ISGY + G   +A+ ++ QM +  V+PD      VL+A 
Sbjct: 223 ARIVFEGLDDRNIVS--WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAY 280

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
             +  +  G+ +H   V+ G  F+  +L +L  MYAKCG ++ AR+ FD++   +++ +N
Sbjct: 281 TDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWN 340

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI-SSILANASL--LRIGAQVHGWVLRR 321
           +M++GY  +G   EA  +F+ MI      D + + S+ILA A +  L +   +  ++ + 
Sbjct: 341 AMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKT 400

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
               D+ +  +LI +++K G +D A  +FD    KDVV W+++I     H +  +A+  F
Sbjct: 401 EYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLF 460

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
             M++ GV P+ +TFV LL+AC H G V+ G  LF  M + YGI  R +HYAC+V+L GR
Sbjct: 461 YAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGR 519

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           +G ++EAY  I   M  E    VWGALL AC ++ +V +GE AA++LF L+P N  ++  
Sbjct: 520 SGHLNEAYDFIT-TMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQ 578

Query: 499 LIKIYGNAGRLDDVERVERMLVDRGL 524
           L  +Y ++   D V +V  ++ ++GL
Sbjct: 579 LSNLYASSRLWDSVAKVRILMREKGL 604



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 212/386 (54%), Gaps = 14/386 (3%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
           F+SLL+     +   H  ++H  +  + L ++  + +K +      G I  A +VFD+  
Sbjct: 74  FSSLLDHSVHKR---HLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFP 130

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
             + F   WN++I GY+    + DAI +Y +M+  GV PD FT P VLKAC+G+ ++ VG
Sbjct: 131 EPSVFL--WNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVG 188

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHH 273
           ++VH    R GF  D FV N LV +YAKCG + +AR VF+ + +++++S+ SM++GY  +
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQN 248

Query: 274 GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIA 330
           GL +EA  IF  M      PD +A+ S+L    +   L  G  +HG V++ G+E++  + 
Sbjct: 249 GLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL 308

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVL 387
            SL  +Y+K G++  A   FD M   +V+ WN++I  ++K+   +EA+  F++M    + 
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIR 368

Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447
            D +T  S + ACA +GS+ +  +     + K      V     +++++ + G +D A  
Sbjct: 369 TDSITVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427

Query: 448 MIVEKMEFEASPVVWGALLYACYLHG 473
           +    ++ +   VVW A++    LHG
Sbjct: 428 VFDRTLDKDV--VVWSAMIVGYGLHG 451


>gi|222624689|gb|EEE58821.1| hypothetical protein OsJ_10390 [Oryza sativa Japonica Group]
          Length = 890

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/424 (35%), Positives = 219/424 (51%), Gaps = 46/424 (10%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM------EEEGVEPDQFTFP 198
           A  VFD+M  R   +  WNSLIS  A  G Y + + L+ +       + +GV P+  T  
Sbjct: 4   ARAVFDEMPRRDVVS--WNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVT 61

Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
            VL ACA L ++  G  VH  A   G   D  V N+++  YAKCG +  AR + D +  K
Sbjct: 62  SVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRK 121

Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFR---------------GMILNGFDPDPVAI----- 298
           D ISY++M+TGY+++G + E   +FR               G++ NG   D + +     
Sbjct: 122 DSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMI 181

Query: 299 -SSILANASLLRI-------------GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
            S +L N++ L I               Q HG+ +R   +  + + ++LI  Y+K G LD
Sbjct: 182 ASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLD 241

Query: 345 QACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +F     +  + W SII A   H +  EAL  F QM   G  PD +TF ++LSACA
Sbjct: 242 TARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACA 301

Query: 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461
           H G V    ++F+ M   +GISP +E YACMV+   RAG++ EA  + V KM FE +  V
Sbjct: 302 HSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKL-VNKMPFEPNAKV 360

Query: 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
           WGALL    + G+V  G  A  +LF +EP N  N+ ++  +Y NAG+ ++ E +  ML  
Sbjct: 361 WGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAGKWEEAETIRSMLWG 420

Query: 522 RGLE 525
            GLE
Sbjct: 421 VGLE 424



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 168/405 (41%), Gaps = 87/405 (21%)

Query: 85  NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
           NG+TV      S+L  C QLK V+ GI +HR    + L  +  + + ++  YA  G +  
Sbjct: 56  NGVTV-----TSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQY 110

Query: 145 AHQVFDQMSNRTAFAFP-----------------------------WNSLISGYAELGEY 175
           A Q+ D M+ + + ++                              WNS+I+G  + G  
Sbjct: 111 ARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQ 170

Query: 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235
            D + L  +M    V P+  T   V+ +      +   ++ H  A+R  +     +++AL
Sbjct: 171 SDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSAL 230

Query: 236 VDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295
           +D YAK G +  AR VF    ++  I + S+++    HG  VEA  +F  MI  G  PD 
Sbjct: 231 IDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDT 290

Query: 296 VAISSILANASLLRIGAQVHG--------WVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347
           V  +++L+  +     A+           + +   +E   C+ ++L    S+ G L +A 
Sbjct: 291 VTFTTVLSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSAL----SRAGMLKEAV 346

Query: 348 WLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407
            L + MP                       FE        P+   + +LL+  A +G V+
Sbjct: 347 KLVNKMP-----------------------FE--------PNAKVWGALLNGAAVVGDVE 375

Query: 408 VG----ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
            G    +RLF +  +  G      +Y  M NLY  AG  +EA ++
Sbjct: 376 FGRYAFDRLFVIEPKNTG------NYIVMANLYSNAGKWEEAETI 414


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 169/561 (30%), Positives = 271/561 (48%), Gaps = 52/561 (9%)

Query: 7   PPSSFHTSLVIIHCGSKNKRSRKQRRQKQQQISRNRITTFSSYPKS-SPTPLLTNQKAFP 65
           PP+   T   ++H    +  +R         + R+ + + S  P   S T LL+     P
Sbjct: 115 PPARRDT---VLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLP 171

Query: 66  KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN 125
              ++    +   +  S   G         +L   C   +A     K+   +P     K+
Sbjct: 172 NISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPN----KD 227

Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM 185
               + ++  Y   G +  A  VF+++  +  F   WN++ISGY   G   +A  L+ +M
Sbjct: 228 DLTWTTMVVGYVRRGDVGAARSVFEEVDGK--FDVVWNAMISGYVHSGMAVEAFELFRRM 285

Query: 186 EEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG----FVLNALVDMYAK 241
             E V  D+FTF  VL ACA +GL   G+ VH   +R    F       V NALV  Y+K
Sbjct: 286 VLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSK 345

Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR---------------GM 286
           CG+I  AR +FD +  KD++S+N++L+GY+    L +A ++F                G 
Sbjct: 346 CGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGY 405

Query: 287 ILNGFDPDPVAI-----------------SSILANASL--LRIGAQVHGWVLRRGVEWDL 327
           +  GF  D + +                  +I A   L  L+ G Q+HG +++ G E   
Sbjct: 406 VHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSN 465

Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERD 384
              N+LI +Y++ G + +A  +F  MP  D VSWN++I A   H    EAL  F++M  +
Sbjct: 466 SAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAE 525

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
           G+ PD ++F+++L+AC H G V  G R F  M   +GI P  +HY  +++L GRAG I E
Sbjct: 526 GIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGE 585

Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
           A  +I + M FE +P +W A+L  C   G++ +G  AA +LF++ P ++  + LL   Y 
Sbjct: 586 ARDLI-KTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYS 644

Query: 505 NAGRLDDVERVERMLVDRGLE 525
            AG   D  RV +++ DRG++
Sbjct: 645 AAGCWVDAARVRKLMRDRGVK 665


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 162/523 (30%), Positives = 260/523 (49%), Gaps = 68/523 (13%)

Query: 63  AFPKTKLQALDSII-------QDLESSVQ----NGITVQTETFASLLETCYQ-------L 104
           A P+  + A ++I+        D  ++V+    +GI+    T ++LL++  +       L
Sbjct: 74  AIPRPSVFAWNAILIALSLHSPDPSAAVRFFAASGISPDEITLSALLKSLAESGPRLSAL 133

Query: 105 KAVE-HGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
            A E H + + R    +L      +S+ L+  YA  G    A  VFD+M  R   +  WN
Sbjct: 134 VAAEFHAVAVQRGFGDDLF-----VSNGLITAYANAGDSRSARAVFDKMPQRDVVS--WN 186

Query: 164 SLISGYAELGEYEDAIALYFQMEE----EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219
           SLIS YA  G Y + + L+ ++       GV P+  T   +L ACA L  I  G +VH  
Sbjct: 187 SLISAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVRVHRF 246

Query: 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279
           A   G   D  V N+ V  YAKCG +  AR +F+R+  KD +SY++M+TGY++HG + + 
Sbjct: 247 AAENGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITGYMNHGHVDKG 306

Query: 280 FDIFR---------------GMILNGFDPDPVAI------SSILANASLLRI-------- 310
            ++F+               G++ NG   + + +      S IL N++ L I        
Sbjct: 307 MELFQRSDAQGISIWNAVIAGLVQNGRQSEVLGLLNEMIGSGILPNSATLSIIIPSVHLF 366

Query: 311 -----GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365
                  Q HG+ +R   +  + +  +LI  YSK G LD +  +F     +  + W SII
Sbjct: 367 STLLGVKQAHGYAIRNNYDQSISVVTALIDAYSKAGFLDGSLRVFKSTGDRSKIVWTSII 426

Query: 366 H---AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
               AH +  EAL  F +M    + PD + F ++L+ACA+ G V    ++F+ M   +GI
Sbjct: 427 SAVAAHGEAAEALCLFNEMANARIRPDTIAFTAVLTACAYTGKVADARKVFNSMQVLFGI 486

Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA 482
           +P +E YACMV+ + RAG++ +A  + V  M FE +  VWG LL      G+V +G    
Sbjct: 487 NPVMEQYACMVSAFSRAGMLKDALEL-VNSMPFEPNAKVWGPLLNGAAEFGDVELGRFVF 545

Query: 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
            +LF +EP N  N+ ++  +Y NAG+ ++ E +  M+   GLE
Sbjct: 546 DRLFIIEPKNTGNYIVMANLYSNAGKWEEAEIIRSMMWGVGLE 588



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 216/473 (45%), Gaps = 60/473 (12%)

Query: 92  ETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
             +  L++ C     +  G +LH RLI  ++   N  ++SKL+ LY+  G +D+A +VFD
Sbjct: 15  RAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNF-LASKLISLYSRTGRLDDARRVFD 73

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-- 208
            +   + FA  WN+++   +       A   +F     G+ PD+ T   +LK+ A  G  
Sbjct: 74  AIPRPSVFA--WNAILIALSLHSPDPSAAVRFF--AASGISPDEITLSALLKSLAESGPR 129

Query: 209 -LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
               V  + H  AV+ GFG D FV N L+  YA  GD   AR VFD++  +D++S+NS++
Sbjct: 130 LSALVAAEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWNSLI 189

Query: 268 TGYIHHGLLVEAFDIFRGMI----LNGFDPDPVAISSILANASLLRI---GAQVHGWVLR 320
           + Y   G   E  ++F+ +       G  P+ V ++SIL   + L+    G +VH +   
Sbjct: 190 SAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVRVHRFAAE 249

Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS-------------------- 360
            G++ D+ + NS +  Y+K GKL  A  LF+ MP+KD VS                    
Sbjct: 250 NGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITGYMNHGHVDKGMEL 309

Query: 361 -----------WNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
                      WN++I     + +  E L    +M   G+LP+  T +S++    HL S 
Sbjct: 310 FQRSDAQGISIWNAVIAGLVQNGRQSEVLGLLNEMIGSGILPNSAT-LSIIIPSVHLFST 368

Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466
            +G +       +      +     +++ Y +AG +D   S+ V K   + S +VW +++
Sbjct: 369 LLGVKQAHGYAIRNNYDQSISVVTALIDAYSKAGFLDG--SLRVFKSTGDRSKIVWTSII 426

Query: 467 YACYLHGN----VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515
            A   HG     +C+    A     + PD    F  ++      G++ D  +V
Sbjct: 427 SAVAAHGEAAEALCLFNEMANA--RIRPDTIA-FTAVLTACAYTGKVADARKV 476



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 18/303 (5%)

Query: 189 GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248
            V PD   +  +++ CA  G +  G ++H   +        F+ + L+ +Y++ G +  A
Sbjct: 9   AVPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDDA 68

Query: 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS-- 306
           R VFD I    + ++N++L     H     A    R    +G  PD + +S++L + +  
Sbjct: 69  RRVFDAIPRPSVFAWNAILIALSLHSPDPSA--AVRFFAASGISPDEITLSALLKSLAES 126

Query: 307 ----LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362
                  + A+ H   ++RG   DL ++N LI  Y+  G    A  +FD MPQ+DVVSWN
Sbjct: 127 GPRLSALVAAEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWN 186

Query: 363 SIIHAHSKD---HEALIYFEQMER----DGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
           S+I A+++     E L  F+++       GV P+ +T  S+L ACA L ++  G R+   
Sbjct: 187 SLISAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVRVHRF 246

Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
             E  G+   V  +   V  Y + G +  A  +  E+M  +   V + A++     HG+V
Sbjct: 247 AAEN-GLDMDVAVWNSTVGFYAKCGKLQYARELF-ERMP-KKDAVSYSAMITGYMNHGHV 303

Query: 476 CMG 478
             G
Sbjct: 304 DKG 306



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 14/190 (7%)

Query: 288 LNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344
           L    PDP A   ++   A++  L  G Q+H  ++   V     +A+ LI +YS+ G+LD
Sbjct: 7   LTAVPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLD 66

Query: 345 QACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401
            A  +FD +P+  V +WN+I+ A   HS D  A + F      G+ PD +T  +LL + A
Sbjct: 67  DARRVFDAIPRPSVFAWNAILIALSLHSPDPSAAVRF--FAASGISPDEITLSALLKSLA 124

Query: 402 HLG---SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458
             G   S  V     +V V++ G    +     ++  Y  AG    A + + +KM  +  
Sbjct: 125 ESGPRLSALVAAEFHAVAVQR-GFGDDLFVSNGLITAYANAGDSRSARA-VFDKMP-QRD 181

Query: 459 PVVWGALLYA 468
            V W +L+ A
Sbjct: 182 VVSWNSLISA 191


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 245/467 (52%), Gaps = 43/467 (9%)

Query: 96  SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155
           SLL+ C  LK   H  + H  + +  L ++  + S+ +   ++ G    +H +F   +  
Sbjct: 46  SLLKQCSNLK---HLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102

Query: 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215
             + +  N++I   +      +AI LY ++    +  D ++ P VLKA   L  I VG +
Sbjct: 103 DIYLY--NTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQ 160

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCG-------------------------------D 244
           +H  A+  G   D  V+ AL+ MY+ CG                               D
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220

Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-- 302
           +  AR +F+R+  +++IS+ +++ GY       EA  +FR M L   +PD +A+ + L  
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSA 280

Query: 303 -ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
            A+   L +G  +H ++ + G+   + + N+LI +Y+K GK+++A  +F +M  K V++W
Sbjct: 281 CAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITW 340

Query: 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
            S+I     H    EAL  F  MER+ + P+ +TFV++LSAC H+G V++G   F  M  
Sbjct: 341 TSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGT 400

Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
           KYGI P+++HY CM++L GRAG + EA  + V  M FEA+  +WG+LL A  +HG+  +G
Sbjct: 401 KYGIKPKIQHYGCMIDLLGRAGFLQEAQEL-VRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
           + A Q L ++EP N  N+ LL  IY    + ++   V +++ D G++
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVK 506


>gi|302143464|emb|CBI22025.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/436 (31%), Positives = 233/436 (53%), Gaps = 40/436 (9%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA-------- 145
           F+ LL++C    ++  G +LH LI T+    +K IS+ LL LY+  G +D A        
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 146 -----------------------HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY 182
                                   ++FD+M  R      WN++++G  +    E+ + L+
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVAT--WNAMVAGLIQFEFNEEGLGLF 172

Query: 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242
            +M E G  PD+F    VL+ CAGL  +  G +VH    + GF F+  V+++L  MY KC
Sbjct: 173 SRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKC 232

Query: 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
           G + +   +   + +++++++N+++ G   +G   E  D +  M + GF PD +   S++
Sbjct: 233 GSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVI 292

Query: 303 ANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
           ++ S L     G Q+H  V++ G    + + +SLI +YS+ G L+ +  +F      DVV
Sbjct: 293 SSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVV 352

Query: 360 SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
            W+S+I A   H +  EA+  F QME++ +  + +TF+SLL AC+H G  + G + F +M
Sbjct: 353 CWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLM 412

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVC 476
           VEKYG+ PR+EHY CMV+L GR G ++EA ++I   M  +A  + W  LL AC +H    
Sbjct: 413 VEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALI-RSMPVKADVITWKTLLSACKIHKKTE 471

Query: 477 MGETAAQKLFELEPDN 492
           M    ++++F L+P +
Sbjct: 472 MARRISEEVFRLDPRD 487



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF S++ +C +L  +  G ++H  +          + S L+ +Y+  G ++ + +VF + 
Sbjct: 287 TFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLEC 346

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            N       W+S+I+ Y   G   +AI L+ QME+E +E +  TF  +L AC+  GL   
Sbjct: 347 ENGDVVC--WSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEK 404

Query: 213 GEK-VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGY 270
           G K   L   ++G          +VD+  + G + +A  +   +  K D+I++ ++L+  
Sbjct: 405 GIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSAC 464

Query: 271 IHH 273
             H
Sbjct: 465 KIH 467


>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
 gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
          Length = 721

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 241/435 (55%), Gaps = 11/435 (2%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           TF+ +L+     + +  G ++H  +       +  + + LL +Y   G +DE  ++  ++
Sbjct: 211 TFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRI 270

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
            +    AF   SL++ YA  G   +A+ ++  M    +  DQ     +L+ C+ LG +RV
Sbjct: 271 RHD---AFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRV 327

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
            +++H  A++  F  D  +LNA+V +Y KCGDI  +  VF+ + NKD IS+ ++LT Y+ 
Sbjct: 328 VKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQ 387

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
           + L  EA   FR M+  G +     I+S+L   +  S L  G Q+H  V++ GV+ D  +
Sbjct: 388 NDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSV 447

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386
            N+L+ +Y+K G +  A  +F+ M  + ++SWN++I +   H  +  A+  F+ M+ + V
Sbjct: 448 ENALVTMYAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMV 507

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            PD  TFV LLS+C+ +G V  G   F  M  KY + P++EHY CMV+L+ RAG   +A 
Sbjct: 508 CPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAM 567

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I + M  +   +VW ALL +C +HGN+ +G  AA+K+ E++P++   + +L  I+ + 
Sbjct: 568 KFI-DAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASI 626

Query: 507 GRLDDVERVERMLVD 521
              D+  R  R L+D
Sbjct: 627 DMWDEKAR-NRTLLD 640



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 169/359 (47%), Gaps = 18/359 (5%)

Query: 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE 187
           + + LL  Y   G + +A  VFD+M  R   +  W+ LI+  + LG   DA++L+  M  
Sbjct: 39  LCNNLLLSYQARGHLADARGVFDEMPRRNVVS--WSVLIAASSRLGVLGDALSLFAGMLR 96

Query: 188 EGVE--PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245
            G    P+ FT   ++  CA       GE+VH  AV+ G   D  V   LVDMYAKCG +
Sbjct: 97  GGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRV 156

Query: 246 VKARTVFDRIGNKDLISYNSMLTGYIHH---GLLVEAFDIFRGMILNGFDPDPVAISSIL 302
             +   F     + ++S+ SM+   ++H   G    A  +F+ M++    P     S IL
Sbjct: 157 GSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCIL 216

Query: 303 A---NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359
                  LL  G QVHG +++ G E D  +  +L+ +Y + G +D+   L   + + D  
Sbjct: 217 KVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRI-RHDAF 275

Query: 360 SWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVM 416
           S  S++ A+++   + EA+  F  M    +  D     SLL  C+ LG ++V + +    
Sbjct: 276 SRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYA 335

Query: 417 VEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
           ++ +     +   A +V +YG+ G  D A S IV         + W ALL  CY+  ++
Sbjct: 336 LKNFFRLDTLLLNA-IVTVYGKCG--DIASSEIVFNTLENKDTISWTALL-TCYVQNDL 390



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 137/284 (48%), Gaps = 7/284 (2%)

Query: 87  ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146
           + +      SLL+ C  L  +    ++H     N  R +  + + ++ +Y   G I  + 
Sbjct: 305 MPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSE 364

Query: 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206
            VF+ + N+   +  W +L++ Y +    ++A+  + +M  +G+E   F    VL+AC+ 
Sbjct: 365 IVFNTLENKDTIS--WTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSA 422

Query: 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSM 266
              +  G ++H   V+ G   D  V NALV MYAKCG +  A  +F+ + N+ +IS+N++
Sbjct: 423 TSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNRGIISWNAL 482

Query: 267 LTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD 326
           +T +  HG  V A  +F  M      PD      +L++ S + + A+   +  +   +++
Sbjct: 483 ITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYN 542

Query: 327 LCIA----NSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSII 365
           L         ++ ++++ G+   A    D MP Q D + W +++
Sbjct: 543 LEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALL 586



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 120/240 (50%), Gaps = 12/240 (5%)

Query: 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGL 275
           VH  AV+ G     ++ N L+  Y   G +  AR VFD +  ++++S++ ++      G+
Sbjct: 24  VHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGV 83

Query: 276 LVEAFDIFRGMILNGF--DPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDLCIA 330
           L +A  +F GM+  G    P+   +++++A  +  +    G QVH   ++ GV+ D  +A
Sbjct: 84  LGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVA 143

Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII-----HAHSKDHE-ALIYFEQMERD 384
            +L+ +Y+K G++  +   F   PQ+ V+SW S+I     H  S   + A++ F++M   
Sbjct: 144 GTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVL 203

Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
            V P + TF  +L        +  G+++   +V K G          ++ +YGR G +DE
Sbjct: 204 KVWPTNATFSCILKVFDVPELLPSGKQVHGCLV-KMGTEVDPALGTALLAMYGRCGGMDE 262



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 111/227 (48%), Gaps = 8/227 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V+ G+        S+L  C    ++  G ++H  +    +  +  + + L+ +YA  G++
Sbjct: 402 VRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVV 461

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A ++F+ M NR   +  WN+LI+ +++ G    AI L+  M+EE V PD +TF  +L 
Sbjct: 462 QVALKIFNSMRNRGIIS--WNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLS 519

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDRI-GNKD 259
           +C+ +GL+  G + +   ++  +  +  +     +VD++A+ G    A    D +    D
Sbjct: 520 SCSRMGLVAEGCE-YFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPD 578

Query: 260 LISYNSMLTG-YIHHGLLVEAFDIFRGMILNGFDPDP-VAISSILAN 304
            + + ++L    +H  L +      + + +   DP P + +SSI A+
Sbjct: 579 QLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHAS 625



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--- 370
           VHG  ++ G      + N+L++ Y   G L  A  +FD MP+++VVSW+ +I A S+   
Sbjct: 24  VHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGV 83

Query: 371 DHEALIYFEQMERDGV--LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEH 428
             +AL  F  M R G    P+  T  +L++ CA       GE++ +  V K G+      
Sbjct: 84  LGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAV-KLGVDEDESV 142

Query: 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAA---QKL 485
              +V++Y + G +  ++   V  +  + S + W +++     HG+    +TA    +K+
Sbjct: 143 AGTLVDMYAKCGRVGSSWRAFV--LTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKM 200

Query: 486 FELE--PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
             L+  P N   F  ++K++     L   ++V   LV  G E
Sbjct: 201 LVLKVWPTNA-TFSCILKVFDVPELLPSGKQVHGCLVKMGTE 241


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 221/384 (57%), Gaps = 9/384 (2%)

Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
           A  +F+ MS      F  NS+  GY+      +  +L+ ++ E+G+ PD +TFP +LKAC
Sbjct: 82  ARHLFEAMSEPDIVIF--NSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKAC 139

Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
           A    +  G ++H  +++ G   + +V   L++MY +C D+  AR VFDRI    ++ YN
Sbjct: 140 AVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYN 199

Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGWVLRR 321
           +M+TGY       EA  +FR M      P+ + + S+L++ +L   L +G  +H +  + 
Sbjct: 200 AMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKH 259

Query: 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYF 378
                + +  +LI +++K G LD A  +F+ M  KD  +W+++I A   H K  ++++ F
Sbjct: 260 SFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMF 319

Query: 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR 438
           E+M  + V PD +TF+ LL+AC+H G V+ G + FS MV K+GI P ++HY  MV+L  R
Sbjct: 320 ERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSR 379

Query: 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498
           AG +++AY  I +K+    +P++W  LL AC  H N+ + E  ++++FEL+  +  ++ +
Sbjct: 380 AGNLEDAYEFI-DKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVI 438

Query: 499 LIKIYGNAGRLDDVERVERMLVDR 522
           L  +Y    + + V+ + +++ DR
Sbjct: 439 LSNLYARNKKWEYVDSLRKVMKDR 462



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 139/278 (50%), Gaps = 10/278 (3%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           +++GI     TF SLL+ C   KA+E G +LH L     L  N  +   L+ +Y     +
Sbjct: 121 LEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDV 180

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
           D A  VFD++       +  N++I+GYA      +A++L+ +M+ + ++P++ T   VL 
Sbjct: 181 DSARCVFDRIVEPCVVCY--NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS 238

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           +CA LG + +G+ +H  A +  F     V  AL+DM+AKCG +  A ++F+++  KD  +
Sbjct: 239 SCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA 298

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG------ 316
           +++M+  Y +HG   ++  +F  M      PD +    +L   S    G    G      
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS--HTGRVEEGRKYFSQ 356

Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
            V + G+   +    S++ + S+ G L+ A    D +P
Sbjct: 357 MVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLP 394



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DGKLDQACWLFDHMPQKD 357
           +++  + LR   Q+  + ++  +E D+     LI   ++   +  +  A  LF+ M + D
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPD 93

Query: 358 VVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414
           +V +NS+   +S+     E    F ++  DG+LPD+ TF SLL ACA   +++ G +L  
Sbjct: 94  IVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHC 153

Query: 415 VMVEKYGISPRVEHYACMVNLYGRAGLIDEA---YSMIVE 451
           + + K G+   V     ++N+Y     +D A   +  IVE
Sbjct: 154 LSM-KLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE 192


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 235/435 (54%), Gaps = 10/435 (2%)

Query: 94  FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153
            +S+L+ C  L A++ G ++H L+          + S L  +Y+  G + +A + F++M 
Sbjct: 179 LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMP 238

Query: 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213
            + A    W S+I G+ + G+++ A+  Y +M  + V  DQ      L AC+ L     G
Sbjct: 239 CKDAVL--WTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFG 296

Query: 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-DLISYNSMLTGYIH 272
           + +H   ++ GF ++ F+ NAL DMY+K GD+V A  VF    +   ++S  +++ GY+ 
Sbjct: 297 KSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVE 356

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
              + +A   F  +   G +P+    +S++   AN + L  G+Q+HG V++   + D  +
Sbjct: 357 MDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFV 416

Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII---HAHSKDHEALIYFEQMERDGV 386
           +++L+ +Y K G  D +  LFD +   D ++WN+++     H     A+  F  M   G+
Sbjct: 417 SSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGL 476

Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
            P+ +TFV+LL  C+H G V+ G   FS M + YG+ P+ EHY+C+++L GRAG + EA 
Sbjct: 477 KPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAE 536

Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
             I   M FE +   W + L AC +HG++   + AA KL +LEP+N     LL  IY   
Sbjct: 537 DFI-NNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKE 595

Query: 507 GRLDDVERVERMLVD 521
            + +DV+ + +M+ D
Sbjct: 596 KQWEDVQSLRKMIKD 610



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 223/434 (51%), Gaps = 23/434 (5%)

Query: 91  TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
           T+T A L++T  + K +  G +LH ++       N  +S+  L LY+  G +D   ++FD
Sbjct: 75  TKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFD 134

Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
           +MS R   +  W S+I+G+A    +++A++ + QM  EG    QF    VL+AC  LG I
Sbjct: 135 KMSQRNMVS--WTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAI 192

Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
           + G +VH   V+ GFG + FV + L DMY+KCG++  A   F+ +  KD + + SM+ G+
Sbjct: 193 QFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGF 252

Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR---IGAQVHGWVLRRGVEWDL 327
           + +G   +A   +  M+ +    D   + S L+  S L+    G  +H  +L+ G E++ 
Sbjct: 253 VKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYET 312

Query: 328 CIANSLIVVYSKDGKLDQACWLFD-HMPQKDVVSWNSIIHAH---SKDHEALIYFEQMER 383
            I N+L  +YSK G +  A  +F  H     +VS  +II  +    +  +AL  F  + R
Sbjct: 313 FIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRR 372

Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE-KYGISPRVEHYACMVNLYGRAGLI 442
            G+ P+  TF SL+ ACA+   ++ G +L   +V+  +   P V   + +V++YG+ GL 
Sbjct: 373 RGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCGLF 430

Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLF-----ELEPDNEHNFE 497
           D +  +  +++E     + W  L+     HG   +G  A +         L+P N   F 
Sbjct: 431 DHSIQLF-DEIE-NPDEIAWNTLVGVFSQHG---LGRNAIETFNGMIHRGLKP-NAVTFV 484

Query: 498 LLIKIYGNAGRLDD 511
            L+K   +AG ++D
Sbjct: 485 NLLKGCSHAGMVED 498



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 18/296 (6%)

Query: 83  VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
           V + + +      S L  C  LKA   G  LH  I          I + L  +Y+  G +
Sbjct: 269 VTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDM 328

Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
             A  VF Q+ +         ++I GY E+ + E A++ +  +   G+EP++FTF  ++K
Sbjct: 329 VSASNVF-QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIK 387

Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
           ACA    +  G ++H   V+F F  D FV + LVDMY KCG    +  +FD I N D I+
Sbjct: 388 ACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIA 447

Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIG-------A 312
           +N+++  +  HGL   A + F GMI  G  P+ V   ++L   ++A ++  G        
Sbjct: 448 WNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSME 507

Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDVVSWNSIIHA 367
           +++G V +   E   C+ + L     + GKL +A    ++MP + +V  W S + A
Sbjct: 508 KIYGVVPKE--EHYSCVIDLL----GRAGKLKEAEDFINNMPFEPNVFGWCSFLGA 557



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 21/331 (6%)

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           D  T   +++  A    +  G+++H   +R G   + F+ N  +++Y+KCG++     +F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LR 309
           D++  ++++S+ S++TG+ H+    EA   F  M + G      A+SS+L A  SL  ++
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369
            G QVH  V++ G   +L + ++L  +YSK G+L  AC  F+ MP KD V W S+I    
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 370 KD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426
           K+    +AL  + +M  D V  D     S LSAC+ L +   G+ L + ++ K G     
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATIL-KLGFEYET 312

Query: 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG--ETAAQK 484
                + ++Y ++G       M+     F+        +     + G V M   E A   
Sbjct: 313 FIGNALTDMYSKSG------DMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALST 366

Query: 485 LFEL-----EPDNEHNFELLIKIYGNAGRLD 510
             +L     EP NE  F  LIK   N  +L+
Sbjct: 367 FVDLRRRGIEP-NEFTFTSLIKACANQAKLE 396


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/398 (36%), Positives = 231/398 (58%), Gaps = 17/398 (4%)

Query: 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEP 192
           + +A  G+     QVF +M  R      W ++ISG A+ G +E ++ L+ +M   G VEP
Sbjct: 130 KFFAGLGM-----QVFYEMGERNVIT--WTAVISGLAQNGYHEHSLKLFKEMMSYGSVEP 182

Query: 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252
           +  T+  +L AC+GL  ++ G ++H   ++ G   D  + +AL+DMY+K G I +A  +F
Sbjct: 183 NSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIF 242

Query: 253 DRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLL 308
           +     D++S   +L G+ H+G   EA  IF  M+  G + D   +S +L    A+ SL 
Sbjct: 243 ELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSL- 301

Query: 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA- 367
           R+G QVH +V++R    +  ++N LI +YSK G LD++  +FD M +++ V+WNS+I A 
Sbjct: 302 RLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAF 361

Query: 368 --HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
             H    +AL  +E M+ +G  P  +TF+SLL AC+H G VK G      M + +G++PR
Sbjct: 362 ARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPR 421

Query: 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKL 485
            EH+AC+V++ GRAG++ EA + I EK+  +   +VW ALL AC L+G+  +G+ AA+ L
Sbjct: 422 SEHHACVVDMLGRAGMLSEARNFI-EKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHL 480

Query: 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
           F   PD+   + LL  IY + G   +  R  R + + G
Sbjct: 481 FSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVG 518



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 167/348 (47%), Gaps = 31/348 (8%)

Query: 93  TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
           T+ SLL  C  L+A++ G ++H LI    ++ +  I S L+ +Y+  G I EA ++F+  
Sbjct: 186 TYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELA 245

Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
                 +     +++G+   G  E+AI ++ +M + G+E D      VL        +R+
Sbjct: 246 EELDMVSL--TVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRL 303

Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
           G++VH   V+  F  + FV N L++MY+KCG + ++  VFDR+  ++ +++NSM+  +  
Sbjct: 304 GQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFAR 363

Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332
           HG  ++A  ++  M L G  P  V   S+L   S        H  ++++G+E+      S
Sbjct: 364 HGDALKALQLYEDMQLEGAKPTDVTFLSLLHACS--------HAGLVKKGMEF----LKS 411

Query: 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392
           +   +  + + +    + D + +  ++S            EA  + E++      P  L 
Sbjct: 412 MTKDHGMNPRSEHHACVVDMLGRAGMLS------------EARNFIEKLPEQ---PGLLV 456

Query: 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440
           + +LL AC+  G  K+G+     +  +   SP    Y  + N+Y   G
Sbjct: 457 WQALLGACSLYGDSKIGKYAAEHLFSETPDSPVP--YVLLANIYSSEG 502



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 159/321 (49%), Gaps = 49/321 (15%)

Query: 200 VLKACAGLGLIRVGEKVHLDAVR---FGFGFDGFV-LNALVDMYAKCGDIVKARTVFDRI 255
           +L  C   G + +G  +H   ++       ++G V +N+L+ MY +CG +  A  VFD +
Sbjct: 51  LLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEM 110

Query: 256 GNKDLISYNSMLTGYIHH-----GLLVEAF------------DIFRGMILNGF------- 291
             +D IS+N+++ G++ +     GL ++ F             +  G+  NG+       
Sbjct: 111 VTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKL 170

Query: 292 ----------DPDPVAISSILANAS---LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS 338
                     +P+ +   S+L   S    L+ G Q+HG +++ G++ DLCI ++L+ +YS
Sbjct: 171 FKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYS 230

Query: 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVS 395
           K G++ +A  +F+   + D+VS   I+   +    + EA+  F +M + G+  D      
Sbjct: 231 KSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSV 290

Query: 396 LLSACAHLGSVKVGERLFSVMVEKYGI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454
           +L       S+++G+++ S +V++  I +P V +   ++N+Y + G +DE  SM V    
Sbjct: 291 VLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSN--GLINMYSKCGALDE--SMKVFDRM 346

Query: 455 FEASPVVWGALLYACYLHGNV 475
            E + V W +++ A   HG+ 
Sbjct: 347 RERNSVTWNSMIAAFARHGDA 367



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 76  IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135
           IQ     ++ GI +     + +L       ++  G ++H  +       N  +S+ L+ +
Sbjct: 270 IQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLINM 329

Query: 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195
           Y+  G +DE+ +VFD+M  R +    WNS+I+ +A  G+   A+ LY  M+ EG +P   
Sbjct: 330 YSKCGALDESMKVFDRMRERNSVT--WNSMIAAFARHGDALKALQLYEDMQLEGAKPTDV 387

Query: 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKARTVFD 253
           TF  +L AC+  GL++ G +  L ++    G +    +   +VDM  + G + +AR   +
Sbjct: 388 TFLSLLHACSHAGLVKKGMEF-LKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIE 446

Query: 254 RI 255
           ++
Sbjct: 447 KL 448


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,112,310,639
Number of Sequences: 23463169
Number of extensions: 340074941
Number of successful extensions: 1010413
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7840
Number of HSP's successfully gapped in prelim test: 3499
Number of HSP's that attempted gapping in prelim test: 830539
Number of HSP's gapped (non-prelim): 54618
length of query: 526
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 379
effective length of database: 8,910,109,524
effective search space: 3376931509596
effective search space used: 3376931509596
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)