BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009782
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 33.5 bits (75), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK---YGISPRVEHYACMVN 434
           F+QM  D V+P+  TF +     A L   K    +   MV++   +GI PR+  Y   + 
Sbjct: 93  FKQMIVDKVVPNEATFTN----GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148

Query: 435 LYGRAGLIDEAYSM 448
            + R G  D+AY +
Sbjct: 149 GFCRKGDADKAYEV 162


>pdb|2B34|A Chain A, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|B Chain B, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|C Chain C, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|D Chain D, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|E Chain E, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|F Chain F, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|G Chain G, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
 pdb|2B34|H Chain H, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
          Length = 199

 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 57  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL 116
           L  N   F KTK        +D    VQN I V  E    +L+T Y L  +E G+ +H +
Sbjct: 75  LAENTPIFDKTKFSMCIPPTEDTLKKVQNVILVGIEAHVCVLQTTYDL--LERGLNVHVV 132

Query: 117 I 117
           +
Sbjct: 133 V 133


>pdb|2QRV|A Chain A, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
 pdb|2QRV|D Chain D, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
 pdb|2QRV|E Chain E, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
 pdb|2QRV|H Chain H, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
          Length = 295

 Score = 28.9 bits (63), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430
           + E +++  +MER    P H T VS +S    L   ++  R +SV V ++  +P  E++A
Sbjct: 237 EKEDILWCTEMERVFGFPVHYTDVSNMS---RLARQRLLGRSWSVPVIRHLFAPLKEYFA 293

Query: 431 CM 432
           C+
Sbjct: 294 CV 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,064,373
Number of Sequences: 62578
Number of extensions: 618194
Number of successful extensions: 1179
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 6
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)