Query 009782
Match_columns 526
No_of_seqs 566 out of 2797
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 17:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.5E-72 3.4E-77 590.6 53.9 517 1-526 178-724 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4.4E-71 9.6E-76 566.2 52.3 465 58-525 89-560 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-69 7E-74 565.6 50.9 516 2-526 78-623 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.2E-64 6.9E-69 517.9 50.5 470 54-526 368-913 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.5E-60 5.5E-65 489.1 53.1 438 86-526 365-845 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 9.8E-56 2.1E-60 453.1 37.8 407 5-449 118-551 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-29 1.7E-33 266.2 50.5 446 65-521 440-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-28 8.6E-33 260.9 48.8 457 58-524 365-868 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 3.7E-22 7.9E-27 183.8 35.8 432 67-511 59-508 (966)
10 PRK11447 cellulose synthase su 99.9 1.7E-20 3.8E-25 202.6 50.5 437 69-520 248-738 (1157)
11 PRK11447 cellulose synthase su 99.9 1.2E-20 2.7E-25 203.7 46.6 446 66-522 122-700 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 2.3E-21 5E-26 178.6 29.7 420 94-524 51-487 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.2E-18 2.6E-23 180.2 46.1 209 68-288 56-275 (987)
14 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.8E-25 179.1 30.9 296 168-524 44-349 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.9E-19 8.4E-24 180.5 40.1 390 94-521 130-570 (615)
16 PRK10049 pgaA outer membrane p 99.9 1.4E-18 3E-23 179.6 44.3 400 89-522 13-456 (765)
17 PRK09782 bacteriophage N4 rece 99.9 5.4E-18 1.2E-22 175.4 43.3 447 56-523 78-707 (987)
18 PRK15174 Vi polysaccharide exp 99.9 3.8E-18 8.3E-23 172.6 40.5 361 66-492 15-385 (656)
19 PRK11788 tetratricopeptide rep 99.9 9.8E-19 2.1E-23 168.7 30.8 288 135-487 44-346 (389)
20 PRK15174 Vi polysaccharide exp 99.9 8.7E-18 1.9E-22 170.0 38.5 328 163-523 46-382 (656)
21 PRK14574 hmsH outer membrane p 99.9 7.7E-17 1.7E-21 163.5 44.9 422 66-494 44-519 (822)
22 PRK10049 pgaA outer membrane p 99.8 1.1E-17 2.4E-22 172.9 35.2 412 56-494 15-462 (765)
23 TIGR00990 3a0801s09 mitochondr 99.8 4.4E-17 9.5E-22 165.6 38.4 386 68-492 139-575 (615)
24 KOG2002 TPR-containing nuclear 99.8 5E-15 1.1E-19 144.3 38.4 448 68-523 176-676 (1018)
25 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.4E-19 127.6 37.1 413 66-524 125-592 (625)
26 PRK14574 hmsH outer membrane p 99.8 4.3E-14 9.4E-19 143.7 43.8 420 94-523 38-514 (822)
27 KOG2002 TPR-containing nuclear 99.7 1.1E-14 2.3E-19 142.1 33.1 294 224-523 447-799 (1018)
28 KOG0495 HAT repeat protein [RN 99.7 2E-11 4.4E-16 114.5 45.5 450 63-522 413-880 (913)
29 KOG2003 TPR repeat-containing 99.7 3.6E-15 7.9E-20 133.2 19.8 445 55-508 200-709 (840)
30 KOG2003 TPR repeat-containing 99.7 4.1E-14 8.9E-19 126.6 24.1 416 99-521 209-688 (840)
31 KOG1126 DNA-binding cell divis 99.7 4.3E-14 9.4E-19 132.8 23.3 193 327-524 421-622 (638)
32 KOG4422 Uncharacterized conser 99.6 2.8E-12 6E-17 114.3 32.9 349 123-489 204-591 (625)
33 KOG0547 Translocase of outer m 99.6 1.5E-12 3.2E-17 117.9 31.5 398 94-520 118-564 (606)
34 PF13429 TPR_15: Tetratricopep 99.6 2.8E-15 6E-20 137.0 10.1 251 234-521 13-276 (280)
35 PRK10747 putative protoheme IX 99.6 1.7E-12 3.8E-17 124.1 29.4 286 172-520 97-388 (398)
36 KOG2076 RNA polymerase III tra 99.6 1.4E-11 3E-16 120.0 35.0 379 105-522 153-555 (895)
37 KOG2076 RNA polymerase III tra 99.6 5.1E-12 1.1E-16 122.9 32.1 339 173-520 153-510 (895)
38 KOG0495 HAT repeat protein [RN 99.6 3.1E-10 6.7E-15 106.8 41.5 427 76-519 366-813 (913)
39 PRK10747 putative protoheme IX 99.6 3.1E-12 6.7E-17 122.4 29.2 281 139-489 97-391 (398)
40 KOG1155 Anaphase-promoting com 99.6 1.5E-11 3.2E-16 110.9 30.3 317 135-521 173-494 (559)
41 PF13429 TPR_15: Tetratricopep 99.6 1.8E-14 3.9E-19 131.7 11.8 258 61-354 13-275 (280)
42 KOG4318 Bicoid mRNA stability 99.6 8.8E-12 1.9E-16 120.8 29.6 426 77-524 11-596 (1088)
43 TIGR00540 hemY_coli hemY prote 99.6 1.3E-11 2.8E-16 118.8 31.0 120 171-292 96-219 (409)
44 KOG1126 DNA-binding cell divis 99.5 1E-12 2.3E-17 123.7 20.1 242 244-522 334-586 (638)
45 KOG1155 Anaphase-promoting com 99.5 1.4E-11 3E-16 111.1 25.8 288 226-523 161-462 (559)
46 COG3071 HemY Uncharacterized e 99.5 7.3E-11 1.6E-15 104.9 29.0 291 165-487 88-389 (400)
47 KOG1915 Cell cycle control pro 99.5 6E-10 1.3E-14 101.0 34.7 419 94-522 76-536 (677)
48 KOG1915 Cell cycle control pro 99.5 5.9E-09 1.3E-13 94.7 40.0 413 67-487 84-584 (677)
49 TIGR00540 hemY_coli hemY prote 99.5 4.7E-11 1E-15 114.9 27.0 274 103-382 96-397 (409)
50 COG2956 Predicted N-acetylgluc 99.5 8.4E-11 1.8E-15 101.3 24.7 284 172-487 48-346 (389)
51 KOG0547 Translocase of outer m 99.4 3.2E-10 6.9E-15 103.2 28.5 330 162-521 118-490 (606)
52 KOG2376 Signal recognition par 99.4 1.3E-08 2.8E-13 95.2 38.9 433 63-518 19-516 (652)
53 KOG1173 Anaphase-promoting com 99.4 6.1E-10 1.3E-14 103.3 29.6 256 259-521 243-517 (611)
54 COG3071 HemY Uncharacterized e 99.4 5.2E-10 1.1E-14 99.5 28.0 278 104-418 97-389 (400)
55 KOG4162 Predicted calmodulin-b 99.4 5.4E-09 1.2E-13 100.7 36.6 421 80-521 312-782 (799)
56 KOG4318 Bicoid mRNA stability 99.4 5E-11 1.1E-15 115.7 21.4 90 181-278 12-101 (1088)
57 KOG1840 Kinesin light chain [C 99.4 1.9E-10 4.1E-15 109.7 24.7 241 232-520 202-477 (508)
58 KOG2047 mRNA splicing factor [ 99.4 1.4E-07 3E-12 89.2 40.9 277 231-511 389-712 (835)
59 COG2956 Predicted N-acetylgluc 99.4 7.6E-10 1.7E-14 95.6 23.4 278 207-522 48-347 (389)
60 TIGR02521 type_IV_pilW type IV 99.4 3E-10 6.6E-15 101.1 22.3 200 261-522 32-232 (234)
61 KOG1156 N-terminal acetyltrans 99.3 3.2E-08 7E-13 93.6 35.5 415 69-524 20-470 (700)
62 KOG1840 Kinesin light chain [C 99.3 1E-09 2.3E-14 104.7 25.5 245 195-487 200-478 (508)
63 PRK12370 invasion protein regu 99.3 6.3E-10 1.4E-14 111.4 25.4 213 70-288 275-501 (553)
64 KOG2047 mRNA splicing factor [ 99.3 1.7E-07 3.8E-12 88.6 39.0 438 69-520 88-613 (835)
65 KOG1174 Anaphase-promoting com 99.3 9E-08 1.9E-12 85.7 34.3 260 225-522 228-500 (564)
66 PF12569 NARP1: NMDA receptor- 99.3 3.1E-08 6.7E-13 96.0 34.3 280 67-353 15-331 (517)
67 PF13041 PPR_2: PPR repeat fam 99.3 5E-12 1.1E-16 80.9 5.6 48 158-205 2-49 (50)
68 PF13041 PPR_2: PPR repeat fam 99.3 8.2E-12 1.8E-16 79.9 5.7 50 192-241 1-50 (50)
69 KOG2376 Signal recognition par 99.2 1.2E-07 2.7E-12 88.8 33.1 408 96-523 17-488 (652)
70 KOG1174 Anaphase-promoting com 99.2 7.9E-08 1.7E-12 86.1 30.0 293 172-499 209-511 (564)
71 KOG1129 TPR repeat-containing 99.2 7.8E-10 1.7E-14 95.6 16.7 222 264-522 227-458 (478)
72 TIGR02521 type_IV_pilW type IV 99.2 3.1E-09 6.6E-14 94.6 21.7 196 91-288 31-231 (234)
73 PRK12370 invasion protein regu 99.2 3.9E-09 8.5E-14 105.7 24.0 243 209-523 276-536 (553)
74 KOG1173 Anaphase-promoting com 99.2 6.7E-08 1.5E-12 90.1 27.1 282 160-470 245-533 (611)
75 KOG4340 Uncharacterized conser 99.2 1.2E-07 2.6E-12 81.3 26.4 414 86-521 5-442 (459)
76 KOG3785 Uncharacterized conser 99.2 8.3E-07 1.8E-11 78.1 31.9 272 67-355 33-313 (557)
77 PF12569 NARP1: NMDA receptor- 99.2 3.7E-08 7.9E-13 95.5 26.1 256 237-524 12-293 (517)
78 KOG1129 TPR repeat-containing 99.1 3.2E-09 6.9E-14 91.9 16.3 231 227-492 221-462 (478)
79 KOG1156 N-terminal acetyltrans 99.1 1.5E-06 3.4E-11 82.6 35.2 428 64-517 49-506 (700)
80 KOG0985 Vesicle coat protein c 99.1 2.4E-06 5.3E-11 85.1 37.0 416 71-519 658-1246(1666)
81 COG3063 PilF Tfp pilus assembl 99.1 5.9E-09 1.3E-13 86.1 16.1 159 331-523 39-203 (250)
82 PRK11189 lipoprotein NlpI; Pro 99.1 1E-07 2.2E-12 87.5 24.7 224 68-299 38-274 (296)
83 KOG4162 Predicted calmodulin-b 99.1 2.5E-06 5.3E-11 82.9 33.9 384 117-524 314-751 (799)
84 KOG3785 Uncharacterized conser 99.1 1.6E-07 3.4E-12 82.6 23.3 381 66-491 67-493 (557)
85 KOG4340 Uncharacterized conser 99.0 1.1E-07 2.4E-12 81.5 21.4 286 61-355 15-338 (459)
86 PRK11189 lipoprotein NlpI; Pro 99.0 8.9E-08 1.9E-12 87.8 20.2 213 272-492 38-269 (296)
87 PF04733 Coatomer_E: Coatomer 99.0 1.1E-07 2.3E-12 85.9 19.7 152 336-494 111-271 (290)
88 KOG0548 Molecular co-chaperone 99.0 1.5E-06 3.2E-11 81.0 26.9 234 263-505 227-472 (539)
89 KOG0624 dsRNA-activated protei 99.0 2.1E-06 4.6E-11 75.3 26.1 315 125-498 37-380 (504)
90 COG3063 PilF Tfp pilus assembl 99.0 2.8E-07 6.2E-12 76.3 19.7 191 262-515 37-229 (250)
91 KOG1125 TPR repeat-containing 98.9 7.9E-08 1.7E-12 90.0 16.1 193 326-520 318-525 (579)
92 PRK15359 type III secretion sy 98.9 6E-08 1.3E-12 78.1 13.4 126 374-505 12-138 (144)
93 KOG0548 Molecular co-chaperone 98.9 1.1E-05 2.4E-10 75.3 29.3 402 99-523 10-456 (539)
94 PRK04841 transcriptional regul 98.9 1.8E-05 4E-10 85.5 35.9 130 392-521 614-759 (903)
95 PRK10370 formate-dependent nit 98.9 8E-08 1.7E-12 81.9 13.9 153 334-494 23-179 (198)
96 PRK15359 type III secretion sy 98.8 1.2E-07 2.6E-12 76.4 13.9 109 410-523 13-122 (144)
97 cd05804 StaR_like StaR_like; a 98.8 2.5E-05 5.5E-10 74.4 32.4 301 160-522 7-336 (355)
98 KOG1070 rRNA processing protei 98.8 4E-07 8.7E-12 93.4 20.3 197 326-526 1457-1667(1710)
99 KOG0624 dsRNA-activated protei 98.8 1.5E-05 3.2E-10 70.2 27.1 308 92-459 39-374 (504)
100 KOG1128 Uncharacterized conser 98.8 1.2E-06 2.7E-11 84.4 22.3 117 403-521 498-615 (777)
101 PRK15179 Vi polysaccharide bio 98.8 4.8E-07 1E-11 91.3 19.4 133 386-521 82-216 (694)
102 KOG0985 Vesicle coat protein c 98.8 0.00012 2.7E-09 73.5 33.4 373 90-518 983-1366(1666)
103 KOG3616 Selective LIM binding 98.8 6.8E-06 1.5E-10 79.3 24.2 215 268-518 740-962 (1636)
104 PF12854 PPR_1: PPR repeat 98.7 1.7E-08 3.8E-13 57.7 4.3 33 224-256 2-34 (34)
105 KOG3616 Selective LIM binding 98.7 7.8E-06 1.7E-10 78.9 24.2 190 139-353 745-934 (1636)
106 TIGR03302 OM_YfiO outer membra 98.7 6.8E-07 1.5E-11 79.5 16.7 132 392-523 72-233 (235)
107 KOG3617 WD40 and TPR repeat-co 98.7 0.00013 2.8E-09 71.7 32.4 149 90-257 725-886 (1416)
108 KOG1914 mRNA cleavage and poly 98.7 0.00019 4E-09 67.4 32.0 147 372-521 348-500 (656)
109 PF04733 Coatomer_E: Coatomer 98.7 1.2E-06 2.7E-11 79.1 17.8 189 324-522 63-265 (290)
110 KOG1125 TPR repeat-containing 98.7 7.3E-07 1.6E-11 83.7 16.5 138 375-515 414-564 (579)
111 cd05804 StaR_like StaR_like; a 98.7 5.1E-05 1.1E-09 72.3 29.3 24 395-418 269-292 (355)
112 COG5010 TadD Flp pilus assembl 98.7 4.6E-06 9.9E-11 70.9 18.2 148 368-518 79-227 (257)
113 KOG3617 WD40 and TPR repeat-co 98.6 0.00032 6.9E-09 69.2 31.4 205 66-287 738-994 (1416)
114 KOG1127 TPR repeat-containing 98.6 7.8E-05 1.7E-09 74.8 27.9 395 107-518 474-909 (1238)
115 PF12854 PPR_1: PPR repeat 98.6 6.7E-08 1.4E-12 55.3 3.8 34 321-354 1-34 (34)
116 PRK04841 transcriptional regul 98.6 0.00057 1.2E-08 74.0 36.6 161 330-491 576-763 (903)
117 KOG1128 Uncharacterized conser 98.6 2.8E-06 6.1E-11 82.0 15.8 188 323-525 394-585 (777)
118 PRK10370 formate-dependent nit 98.6 1.2E-05 2.6E-10 68.5 18.2 120 402-523 51-174 (198)
119 TIGR02552 LcrH_SycD type III s 98.5 1.5E-06 3.2E-11 69.7 11.7 114 377-494 5-120 (135)
120 COG5010 TadD Flp pilus assembl 98.5 4.5E-06 9.7E-11 71.0 14.7 136 386-523 62-198 (257)
121 PRK15363 pathogenicity island 98.5 1.6E-06 3.5E-11 68.6 10.7 98 425-522 34-132 (157)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.9E-06 6.3E-11 79.3 14.2 124 391-519 170-294 (395)
123 PLN02789 farnesyltranstransfer 98.5 1.5E-05 3.2E-10 73.1 18.6 196 306-505 51-267 (320)
124 KOG1127 TPR repeat-containing 98.5 0.00022 4.9E-09 71.7 27.1 369 141-522 473-879 (1238)
125 KOG3060 Uncharacterized conser 98.5 3.5E-05 7.7E-10 65.1 18.5 162 332-496 57-228 (289)
126 PLN02789 farnesyltranstransfer 98.5 5.1E-05 1.1E-09 69.6 21.4 200 266-471 43-267 (320)
127 PF09976 TPR_21: Tetratricopep 98.4 1.4E-05 3.1E-10 64.6 15.0 127 391-519 13-144 (145)
128 COG4783 Putative Zn-dependent 98.4 4.8E-05 1E-09 70.6 19.6 112 402-515 318-430 (484)
129 KOG1070 rRNA processing protei 98.4 7E-05 1.5E-09 77.8 22.3 206 90-296 1457-1670(1710)
130 TIGR02552 LcrH_SycD type III s 98.4 9.7E-06 2.1E-10 65.0 13.5 109 412-523 5-115 (135)
131 KOG2053 Mitochondrial inherita 98.4 0.0032 6.8E-08 63.2 43.2 434 67-514 20-562 (932)
132 KOG3081 Vesicle coat complex C 98.4 0.00023 5.1E-09 60.8 21.5 177 313-494 94-277 (299)
133 KOG3060 Uncharacterized conser 98.4 3.6E-05 7.8E-10 65.0 16.5 180 340-523 25-221 (289)
134 TIGR03302 OM_YfiO outer membra 98.4 3.5E-05 7.5E-10 68.5 17.8 179 90-289 32-232 (235)
135 PRK14720 transcript cleavage f 98.3 0.00012 2.6E-09 75.2 22.2 57 125-181 30-87 (906)
136 KOG0553 TPR repeat-containing 98.3 6.9E-06 1.5E-10 71.3 10.9 108 400-510 91-200 (304)
137 COG4783 Putative Zn-dependent 98.3 0.00016 3.5E-09 67.2 20.0 133 368-522 319-454 (484)
138 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.3E-05 2.9E-10 62.5 11.4 106 392-497 4-114 (119)
139 cd00189 TPR Tetratricopeptide 98.3 1.1E-05 2.3E-10 60.0 10.5 95 429-523 3-98 (100)
140 TIGR00756 PPR pentatricopeptid 98.3 2.2E-06 4.8E-11 49.9 4.6 34 161-194 2-35 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.7E-05 1E-09 71.3 14.9 122 131-256 174-295 (395)
142 KOG2053 Mitochondrial inherita 98.2 0.0087 1.9E-07 60.2 33.9 64 461-524 438-504 (932)
143 PRK15179 Vi polysaccharide bio 98.2 9.3E-05 2E-09 75.1 17.8 145 88-235 83-228 (694)
144 PF12895 Apc3: Anaphase-promot 98.2 1.9E-06 4.1E-11 62.3 4.2 79 439-518 2-83 (84)
145 PLN03088 SGT1, suppressor of 98.2 1.6E-05 3.4E-10 74.8 11.5 109 396-506 8-117 (356)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 5.4E-05 1.2E-09 59.0 12.5 98 427-524 3-107 (119)
147 TIGR00756 PPR pentatricopeptid 98.2 4.7E-06 1E-10 48.5 4.6 34 261-294 1-34 (35)
148 KOG0553 TPR repeat-containing 98.2 1.1E-05 2.3E-10 70.1 8.5 90 433-522 88-178 (304)
149 PRK02603 photosystem I assembl 98.1 3.9E-05 8.5E-10 64.2 11.6 82 427-508 36-121 (172)
150 PF13812 PPR_3: Pentatricopept 98.1 5.4E-06 1.2E-10 47.8 4.3 33 160-192 2-34 (34)
151 KOG3081 Vesicle coat complex C 98.1 0.0012 2.7E-08 56.5 19.7 144 369-522 122-271 (299)
152 PF13812 PPR_3: Pentatricopept 98.1 6.3E-06 1.4E-10 47.6 4.4 33 261-293 2-34 (34)
153 PF13414 TPR_11: TPR repeat; P 98.1 1.1E-05 2.4E-10 55.8 6.4 65 458-522 2-67 (69)
154 PF13432 TPR_16: Tetratricopep 98.1 1.2E-05 2.6E-10 54.7 6.3 58 465-522 3-60 (65)
155 PF07079 DUF1347: Protein of u 98.1 0.01 2.2E-07 55.1 33.3 186 327-519 298-521 (549)
156 COG4235 Cytochrome c biogenesi 98.1 0.00014 3E-09 63.8 13.5 101 423-523 153-257 (287)
157 PLN03088 SGT1, suppressor of 98.0 9E-05 1.9E-09 69.8 13.4 87 369-459 16-103 (356)
158 CHL00033 ycf3 photosystem I as 98.0 6.4E-05 1.4E-09 62.7 11.1 94 425-518 34-138 (168)
159 PRK14720 transcript cleavage f 98.0 0.0028 6E-08 65.5 24.5 221 90-355 30-251 (906)
160 PRK02603 photosystem I assembl 98.0 0.00021 4.5E-09 59.9 14.1 114 391-508 36-166 (172)
161 PF13432 TPR_16: Tetratricopep 98.0 2.8E-05 6.1E-10 52.9 6.9 62 432-493 3-65 (65)
162 KOG1914 mRNA cleavage and poly 98.0 0.015 3.3E-07 55.2 36.7 417 89-510 18-527 (656)
163 PF13414 TPR_11: TPR repeat; P 97.9 2.9E-05 6.4E-10 53.6 5.8 66 425-490 2-69 (69)
164 cd00189 TPR Tetratricopeptide 97.9 0.00017 3.8E-09 53.2 10.6 97 393-491 3-100 (100)
165 COG4700 Uncharacterized protei 97.9 0.0019 4.2E-08 52.1 15.9 131 386-519 85-219 (251)
166 PF09976 TPR_21: Tetratricopep 97.9 0.00089 1.9E-08 54.1 14.8 116 369-486 25-145 (145)
167 PRK10153 DNA-binding transcrip 97.8 0.00051 1.1E-08 67.6 14.9 121 372-494 359-488 (517)
168 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.8E-10 43.7 3.6 29 161-189 2-30 (31)
169 KOG1538 Uncharacterized conser 97.8 0.0035 7.6E-08 60.4 19.4 66 277-351 617-682 (1081)
170 CHL00033 ycf3 photosystem I as 97.8 0.00056 1.2E-08 57.0 12.9 117 390-509 35-167 (168)
171 PF14559 TPR_19: Tetratricopep 97.8 2.9E-05 6.4E-10 53.4 4.1 57 438-494 3-60 (68)
172 PF08579 RPM2: Mitochondrial r 97.8 0.00025 5.3E-09 52.2 8.8 79 163-241 29-116 (120)
173 PF10037 MRP-S27: Mitochondria 97.8 0.00065 1.4E-08 64.1 14.0 122 121-242 61-186 (429)
174 PF13371 TPR_9: Tetratricopept 97.8 0.00011 2.5E-09 51.2 6.7 55 468-522 4-58 (73)
175 PF01535 PPR: PPR repeat; Int 97.8 4.2E-05 9.1E-10 42.9 3.6 31 261-291 1-31 (31)
176 KOG0550 Molecular chaperone (D 97.7 0.0022 4.8E-08 58.5 15.5 89 400-491 259-353 (486)
177 PRK15331 chaperone protein Sic 97.7 0.00064 1.4E-08 54.3 10.3 91 431-521 42-133 (165)
178 PRK10803 tol-pal system protei 97.7 0.00052 1.1E-08 61.1 11.0 103 392-494 145-252 (263)
179 PF12895 Apc3: Anaphase-promot 97.7 0.00022 4.7E-09 51.4 7.1 82 403-485 2-84 (84)
180 PF14559 TPR_19: Tetratricopep 97.7 6E-05 1.3E-09 51.8 3.9 50 471-520 3-52 (68)
181 PF05843 Suf: Suppressor of fo 97.6 0.00091 2E-08 60.7 12.2 136 329-494 3-142 (280)
182 PF12688 TPR_5: Tetratrico pep 97.6 0.0015 3.3E-08 50.1 11.4 86 398-484 9-100 (120)
183 PF14938 SNAP: Soluble NSF att 97.6 0.016 3.4E-07 53.0 20.2 78 392-470 157-246 (282)
184 KOG2041 WD40 repeat protein [G 97.6 0.082 1.8E-06 52.0 28.3 174 88-283 689-875 (1189)
185 PRK10153 DNA-binding transcrip 97.6 0.0036 7.7E-08 61.8 16.9 136 385-524 332-484 (517)
186 PF05843 Suf: Suppressor of fo 97.5 0.0012 2.6E-08 59.9 11.7 129 391-521 2-135 (280)
187 PRK15363 pathogenicity island 97.5 0.0019 4.1E-08 51.4 11.1 94 393-489 38-133 (157)
188 PF10037 MRP-S27: Mitochondria 97.5 0.0018 3.9E-08 61.2 12.7 123 85-207 60-186 (429)
189 PF06239 ECSIT: Evolutionarily 97.5 0.0017 3.7E-08 54.2 11.1 113 191-318 44-161 (228)
190 PF08579 RPM2: Mitochondrial r 97.5 0.0026 5.7E-08 46.9 10.3 76 264-339 29-116 (120)
191 KOG1130 Predicted G-alpha GTPa 97.5 0.0011 2.3E-08 60.3 10.2 130 391-520 196-342 (639)
192 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.7E-09 41.7 2.6 33 482-514 2-34 (34)
193 PF13371 TPR_9: Tetratricopept 97.4 0.00062 1.3E-08 47.5 6.6 63 434-496 3-66 (73)
194 PF14938 SNAP: Soluble NSF att 97.4 0.0084 1.8E-07 54.7 15.6 128 392-519 116-263 (282)
195 PRK10803 tol-pal system protei 97.4 0.0032 7E-08 56.1 12.1 95 428-522 145-246 (263)
196 COG3898 Uncharacterized membra 97.4 0.11 2.4E-06 47.5 28.0 269 242-522 97-392 (531)
197 KOG0550 Molecular chaperone (D 97.3 0.13 2.7E-06 47.6 21.5 284 101-454 59-349 (486)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00097 2.1E-08 62.4 8.5 98 424-524 73-176 (453)
199 PF04840 Vps16_C: Vps16, C-ter 97.3 0.13 2.8E-06 47.5 25.9 110 391-518 178-287 (319)
200 COG4235 Cytochrome c biogenesi 97.3 0.0078 1.7E-07 53.1 12.9 111 388-501 154-268 (287)
201 PF07079 DUF1347: Protein of u 97.2 0.18 4E-06 47.1 30.2 364 67-453 90-521 (549)
202 PF13428 TPR_14: Tetratricopep 97.2 0.00071 1.5E-08 41.5 4.3 42 460-501 2-43 (44)
203 PF13424 TPR_12: Tetratricopep 97.2 0.0005 1.1E-08 48.7 3.9 62 460-521 6-74 (78)
204 PF06239 ECSIT: Evolutionarily 97.2 0.0058 1.3E-07 51.2 10.3 86 257-342 44-153 (228)
205 COG4700 Uncharacterized protei 97.1 0.037 8.1E-07 45.0 14.0 129 87-217 85-216 (251)
206 PRK10866 outer membrane biogen 97.1 0.042 9.1E-07 48.6 16.0 150 369-521 46-240 (243)
207 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.6E-07 44.4 11.6 91 166-256 8-102 (120)
208 PF09205 DUF1955: Domain of un 97.1 0.031 6.7E-07 42.6 12.2 68 458-525 85-152 (161)
209 KOG0543 FKBP-type peptidyl-pro 97.0 0.014 3E-07 53.6 12.4 124 399-522 217-355 (397)
210 KOG1538 Uncharacterized conser 97.0 0.086 1.9E-06 51.3 17.9 95 54-153 554-659 (1081)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0055 1.2E-07 57.5 9.8 64 389-455 74-141 (453)
212 PF03704 BTAD: Bacterial trans 97.0 0.0037 8E-08 50.7 7.8 61 460-520 63-123 (146)
213 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.32 7E-06 45.5 27.1 130 390-521 397-530 (660)
214 KOG2796 Uncharacterized conser 97.0 0.21 4.5E-06 43.2 19.0 127 367-493 189-320 (366)
215 KOG2280 Vacuolar assembly/sort 97.0 0.48 1E-05 47.4 27.8 138 84-222 425-574 (829)
216 KOG1130 Predicted G-alpha GTPa 96.9 0.0082 1.8E-07 54.9 9.8 96 392-487 237-343 (639)
217 PRK10866 outer membrane biogen 96.9 0.28 6E-06 43.5 21.2 55 235-289 38-98 (243)
218 KOG2796 Uncharacterized conser 96.8 0.17 3.7E-06 43.7 16.4 139 161-301 179-325 (366)
219 PF13424 TPR_12: Tetratricopep 96.8 0.0025 5.4E-08 45.1 4.9 62 427-488 6-75 (78)
220 PF13525 YfiO: Outer membrane 96.8 0.051 1.1E-06 46.8 13.7 126 397-522 12-170 (203)
221 PRK11906 transcriptional regul 96.8 0.034 7.4E-07 52.5 12.9 144 372-518 275-432 (458)
222 PRK11619 lytic murein transgly 96.8 0.82 1.8E-05 46.8 32.3 265 234-520 104-373 (644)
223 PF13281 DUF4071: Domain of un 96.7 0.23 5E-06 46.3 17.8 158 332-492 146-338 (374)
224 KOG2610 Uncharacterized conser 96.7 0.027 5.8E-07 50.3 10.8 155 362-519 110-273 (491)
225 PF13512 TPR_18: Tetratricopep 96.6 0.071 1.5E-06 41.8 12.0 95 400-494 20-134 (142)
226 KOG4555 TPR repeat-containing 96.6 0.021 4.5E-07 43.4 8.6 91 399-491 52-147 (175)
227 KOG0543 FKBP-type peptidyl-pro 96.6 0.0098 2.1E-07 54.6 8.2 91 433-523 215-321 (397)
228 PRK11906 transcriptional regul 96.6 0.16 3.4E-06 48.2 15.8 140 342-486 273-434 (458)
229 PF13512 TPR_18: Tetratricopep 96.6 0.069 1.5E-06 41.9 11.3 91 432-522 16-128 (142)
230 KOG2041 WD40 repeat protein [G 96.5 1 2.2E-05 44.8 21.9 72 104-184 747-821 (1189)
231 COG3898 Uncharacterized membra 96.5 0.71 1.5E-05 42.6 27.2 283 162-454 85-391 (531)
232 COG1729 Uncharacterized protei 96.4 0.031 6.8E-07 48.8 9.5 105 391-496 143-252 (262)
233 PF12921 ATP13: Mitochondrial 96.4 0.051 1.1E-06 42.2 9.7 99 326-437 1-99 (126)
234 COG1729 Uncharacterized protei 96.3 0.085 1.8E-06 46.1 11.7 84 438-521 153-243 (262)
235 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.99 2.1E-05 42.5 28.9 116 372-491 414-534 (660)
236 KOG4234 TPR repeat-containing 96.3 0.031 6.7E-07 46.0 8.3 104 397-502 102-211 (271)
237 PF13525 YfiO: Outer membrane 96.3 0.14 2.9E-06 44.1 13.0 123 392-514 44-199 (203)
238 KOG1941 Acetylcholine receptor 96.3 0.47 1E-05 43.2 16.2 107 327-454 162-274 (518)
239 PF13281 DUF4071: Domain of un 96.2 0.96 2.1E-05 42.3 18.6 161 127-289 142-334 (374)
240 KOG1258 mRNA processing protei 96.1 1.6 3.4E-05 42.8 33.0 180 325-509 295-491 (577)
241 KOG2066 Vacuolar assembly/sort 96.1 1.9 4.1E-05 43.6 21.4 30 330-359 508-537 (846)
242 KOG2610 Uncharacterized conser 96.1 0.3 6.6E-06 43.8 13.8 172 340-516 116-309 (491)
243 COG3118 Thioredoxin domain-con 96.1 0.46 1E-05 42.1 14.9 117 400-520 144-263 (304)
244 PF04053 Coatomer_WDAD: Coatom 95.7 0.31 6.6E-06 47.3 13.9 154 69-255 274-428 (443)
245 PRK15331 chaperone protein Sic 95.7 0.25 5.5E-06 39.8 10.9 91 399-492 46-137 (165)
246 PF03704 BTAD: Bacterial trans 95.6 0.068 1.5E-06 43.2 8.0 67 392-460 64-137 (146)
247 PF07719 TPR_2: Tetratricopept 95.6 0.032 7E-07 31.6 4.4 32 461-492 3-34 (34)
248 KOG4234 TPR repeat-containing 95.5 0.32 6.9E-06 40.3 10.8 91 433-523 102-198 (271)
249 COG4105 ComL DNA uptake lipopr 95.5 1.2 2.7E-05 38.8 14.9 122 401-522 45-196 (254)
250 PF00515 TPR_1: Tetratricopept 95.4 0.028 6.1E-07 31.9 3.7 31 461-491 3-33 (34)
251 smart00299 CLH Clathrin heavy 95.4 1 2.3E-05 35.9 15.4 86 94-185 10-95 (140)
252 KOG2280 Vacuolar assembly/sort 95.4 3.5 7.5E-05 41.7 33.3 326 163-519 441-796 (829)
253 PF12921 ATP13: Mitochondrial 95.4 0.24 5.2E-06 38.5 9.5 94 193-304 1-97 (126)
254 PF04840 Vps16_C: Vps16, C-ter 95.3 2.4 5.1E-05 39.3 30.8 82 388-484 206-287 (319)
255 KOG1585 Protein required for f 95.3 1.7 3.6E-05 37.5 15.4 147 368-516 84-250 (308)
256 KOG1585 Protein required for f 95.3 0.77 1.7E-05 39.5 12.9 201 91-315 31-250 (308)
257 KOG0276 Vesicle coat complex C 95.1 0.56 1.2E-05 45.7 12.9 152 336-518 595-746 (794)
258 COG3629 DnrI DNA-binding trans 95.0 0.14 3.1E-06 45.6 8.3 61 427-487 154-215 (280)
259 KOG1941 Acetylcholine receptor 95.0 0.8 1.7E-05 41.8 12.8 128 392-519 124-272 (518)
260 PF10300 DUF3808: Protein of u 94.8 0.55 1.2E-05 46.2 12.8 148 368-518 201-365 (468)
261 COG4785 NlpI Lipoprotein NlpI, 94.8 0.31 6.8E-06 40.9 9.2 150 369-523 79-267 (297)
262 PF10300 DUF3808: Protein of u 94.8 2.9 6.2E-05 41.3 17.6 145 329-475 190-356 (468)
263 PF09613 HrpB1_HrpK: Bacterial 94.8 1.4 3.1E-05 35.4 12.5 109 399-512 19-128 (160)
264 PF13176 TPR_7: Tetratricopept 94.7 0.07 1.5E-06 30.8 3.9 26 495-520 1-26 (36)
265 KOG3941 Intermediate in Toll s 94.7 0.25 5.4E-06 43.2 8.7 97 160-256 68-186 (406)
266 PF13170 DUF4003: Protein of u 94.7 3.3 7.2E-05 37.9 17.1 92 343-435 119-226 (297)
267 KOG4648 Uncharacterized conser 94.7 0.076 1.6E-06 47.6 5.7 110 396-512 103-214 (536)
268 KOG1920 IkappaB kinase complex 94.7 5.1 0.00011 42.8 19.3 23 333-355 1032-1054(1265)
269 PF02259 FAT: FAT domain; Int 94.7 4 8.7E-05 38.6 21.3 117 389-506 145-305 (352)
270 PF04184 ST7: ST7 protein; In 94.6 4.5 9.7E-05 39.0 17.2 101 391-492 260-379 (539)
271 KOG4555 TPR repeat-containing 94.5 0.51 1.1E-05 36.1 8.8 89 435-523 52-145 (175)
272 PF13428 TPR_14: Tetratricopep 94.5 0.077 1.7E-06 32.3 3.9 32 428-459 3-34 (44)
273 KOG3941 Intermediate in Toll s 94.4 0.46 9.9E-06 41.7 9.6 95 249-343 54-174 (406)
274 COG0457 NrfG FOG: TPR repeat [ 94.4 3.2 6.9E-05 36.1 23.9 119 399-520 139-263 (291)
275 PF04053 Coatomer_WDAD: Coatom 94.3 1.8 3.8E-05 42.2 14.6 158 168-354 270-429 (443)
276 PF04184 ST7: ST7 protein; In 94.2 2.2 4.8E-05 41.0 14.4 60 429-488 262-324 (539)
277 PF13170 DUF4003: Protein of u 94.2 4.5 9.7E-05 37.0 16.3 129 107-237 78-225 (297)
278 PF07035 Mic1: Colon cancer-as 94.1 2.7 5.9E-05 34.4 15.2 138 73-224 11-150 (167)
279 COG4105 ComL DNA uptake lipopr 94.0 3.9 8.4E-05 35.8 18.5 130 390-520 71-231 (254)
280 COG3118 Thioredoxin domain-con 93.8 4.7 0.0001 36.1 16.7 163 73-243 120-286 (304)
281 COG4649 Uncharacterized protei 93.8 3.1 6.7E-05 33.9 12.7 130 92-222 60-195 (221)
282 KOG4642 Chaperone-dependent E3 93.8 0.19 4E-06 42.9 5.9 85 400-487 20-106 (284)
283 KOG2066 Vacuolar assembly/sort 93.7 9.1 0.0002 39.0 25.2 147 133-288 363-533 (846)
284 KOG1920 IkappaB kinase complex 93.7 12 0.00026 40.3 21.5 146 243-416 894-1052(1265)
285 PF13181 TPR_8: Tetratricopept 93.5 0.14 3E-06 28.9 3.5 30 461-490 3-32 (34)
286 smart00299 CLH Clathrin heavy 93.5 3.2 6.9E-05 33.1 15.9 45 162-207 10-54 (140)
287 PF13176 TPR_7: Tetratricopept 93.5 0.15 3.3E-06 29.3 3.6 28 461-488 1-28 (36)
288 COG2976 Uncharacterized protei 93.5 3.6 7.9E-05 34.3 12.6 90 396-489 95-189 (207)
289 PF09205 DUF1955: Domain of un 93.4 2.6 5.5E-05 32.6 10.7 63 162-225 89-151 (161)
290 KOG0890 Protein kinase of the 93.3 20 0.00043 41.8 28.4 363 99-500 1391-1796(2382)
291 KOG4648 Uncharacterized conser 93.3 0.38 8.1E-06 43.4 7.3 88 368-459 110-198 (536)
292 PF06552 TOM20_plant: Plant sp 93.3 0.79 1.7E-05 37.5 8.5 76 442-524 51-138 (186)
293 COG4649 Uncharacterized protei 93.2 1.3 2.8E-05 36.0 9.3 25 330-354 170-194 (221)
294 PF08631 SPO22: Meiosis protei 93.2 6.6 0.00014 35.7 21.5 160 67-227 4-190 (278)
295 COG0457 NrfG FOG: TPR repeat [ 92.9 5.7 0.00012 34.4 23.1 219 69-289 36-265 (291)
296 PF00637 Clathrin: Region in C 92.8 0.012 2.5E-07 47.5 -2.5 53 98-150 14-66 (143)
297 PRK09687 putative lyase; Provi 92.3 8.6 0.00019 35.0 25.8 61 425-490 205-265 (280)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1 2.3E-05 32.4 6.9 62 72-134 23-84 (103)
299 PF02284 COX5A: Cytochrome c o 92.1 1.3 2.9E-05 32.3 7.4 61 74-135 28-88 (108)
300 PF09613 HrpB1_HrpK: Bacterial 92.1 5.4 0.00012 32.2 12.0 54 103-157 22-75 (160)
301 PF07719 TPR_2: Tetratricopept 92.1 0.31 6.7E-06 27.3 3.7 30 494-523 2-31 (34)
302 PF06552 TOM20_plant: Plant sp 92.1 0.4 8.7E-06 39.2 5.4 45 475-519 51-99 (186)
303 PF00515 TPR_1: Tetratricopept 92.1 0.19 4.1E-06 28.3 2.7 31 428-458 3-33 (34)
304 PF13431 TPR_17: Tetratricopep 92.1 0.1 2.2E-06 29.6 1.6 29 451-479 4-33 (34)
305 KOG2114 Vacuolar assembly/sort 92.0 17 0.00037 37.6 26.2 177 91-286 334-516 (933)
306 COG3629 DnrI DNA-binding trans 91.5 1.2 2.7E-05 39.7 8.4 78 126-203 153-236 (280)
307 PF10602 RPN7: 26S proteasome 91.2 5.1 0.00011 33.5 11.4 57 392-449 38-96 (177)
308 TIGR02561 HrpB1_HrpK type III 91.2 1.5 3.3E-05 34.7 7.5 70 438-508 22-93 (153)
309 KOG0890 Protein kinase of the 91.1 37 0.0008 39.8 23.2 62 460-523 1671-1732(2382)
310 PF07721 TPR_4: Tetratricopept 91.1 0.35 7.6E-06 25.3 2.9 23 495-517 3-25 (26)
311 TIGR02561 HrpB1_HrpK type III 91.0 6.8 0.00015 31.1 11.9 66 401-469 21-87 (153)
312 PF13374 TPR_10: Tetratricopep 90.9 0.51 1.1E-05 28.0 3.9 27 495-521 4-30 (42)
313 KOG1308 Hsp70-interacting prot 90.5 0.2 4.3E-06 45.1 2.5 85 439-523 127-212 (377)
314 PF00637 Clathrin: Region in C 90.4 0.27 5.8E-06 39.5 3.1 52 166-217 14-65 (143)
315 KOG4507 Uncharacterized conser 90.2 2 4.4E-05 41.9 8.9 101 401-504 618-721 (886)
316 PF13174 TPR_6: Tetratricopept 90.0 0.6 1.3E-05 25.9 3.5 24 467-490 8-31 (33)
317 PF10602 RPN7: 26S proteasome 90.0 3.5 7.5E-05 34.5 9.3 62 161-222 38-101 (177)
318 KOG2114 Vacuolar assembly/sort 89.9 27 0.00058 36.3 27.2 178 128-318 336-516 (933)
319 PF13181 TPR_8: Tetratricopept 89.9 0.83 1.8E-05 25.6 4.0 28 495-522 3-30 (34)
320 TIGR02508 type_III_yscG type I 89.7 5.3 0.00011 29.1 8.5 77 308-385 21-98 (115)
321 KOG1258 mRNA processing protei 89.6 23 0.0005 35.2 28.0 123 389-513 296-420 (577)
322 PF13174 TPR_6: Tetratricopept 89.4 0.61 1.3E-05 25.8 3.2 28 495-522 2-29 (33)
323 COG3947 Response regulator con 89.3 1.6 3.4E-05 38.7 6.8 59 462-520 282-340 (361)
324 PF13374 TPR_10: Tetratricopep 89.1 0.85 1.8E-05 27.0 3.9 28 460-487 3-30 (42)
325 PF13929 mRNA_stabil: mRNA sta 89.0 8.7 0.00019 34.4 11.3 100 386-485 160-264 (292)
326 TIGR03504 FimV_Cterm FimV C-te 88.8 0.89 1.9E-05 27.5 3.6 27 497-523 3-29 (44)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 88.6 3.4 7.3E-05 29.9 6.9 60 373-434 25-84 (103)
328 KOG0276 Vesicle coat complex C 88.6 15 0.00032 36.5 13.2 101 136-255 647-747 (794)
329 PF14853 Fis1_TPR_C: Fis1 C-te 88.0 1.2 2.5E-05 28.4 4.0 32 464-495 6-37 (53)
330 COG2976 Uncharacterized protei 87.8 15 0.00033 30.8 14.0 129 391-523 55-189 (207)
331 PF02284 COX5A: Cytochrome c o 87.8 3.2 6.9E-05 30.4 6.4 61 373-435 28-88 (108)
332 PF08631 SPO22: Meiosis protei 87.5 22 0.00048 32.3 23.3 18 469-486 256-273 (278)
333 TIGR02508 type_III_yscG type I 87.3 9.4 0.0002 27.9 9.1 88 209-300 20-107 (115)
334 PF04097 Nic96: Nup93/Nic96; 87.1 16 0.00034 37.7 13.6 84 334-417 265-354 (613)
335 PRK10941 hypothetical protein; 86.9 3.5 7.7E-05 37.0 7.9 64 431-494 186-250 (269)
336 COG4785 NlpI Lipoprotein NlpI, 86.7 19 0.00041 30.8 15.5 178 105-289 79-266 (297)
337 smart00028 TPR Tetratricopepti 86.7 1.7 3.7E-05 23.2 4.1 28 463-490 5-32 (34)
338 PF04910 Tcf25: Transcriptiona 86.4 29 0.00063 32.9 14.1 57 465-521 109-167 (360)
339 COG4455 ImpE Protein of avirul 85.7 3.9 8.5E-05 34.7 6.9 66 428-493 3-69 (273)
340 KOG0376 Serine-threonine phosp 85.3 0.79 1.7E-05 43.6 3.1 95 397-494 11-107 (476)
341 PF07035 Mic1: Colon cancer-as 85.2 20 0.00042 29.5 16.1 135 375-523 14-150 (167)
342 PRK09687 putative lyase; Provi 85.2 30 0.00064 31.5 24.1 18 124-141 35-52 (280)
343 PF02259 FAT: FAT domain; Int 84.6 36 0.00078 32.1 23.3 60 325-384 144-213 (352)
344 KOG4507 Uncharacterized conser 84.2 6.9 0.00015 38.5 8.7 135 387-523 568-706 (886)
345 PF14561 TPR_20: Tetratricopep 84.1 2.9 6.3E-05 30.2 5.0 62 451-512 13-77 (90)
346 KOG2063 Vacuolar assembly/sort 84.1 39 0.00085 35.9 14.7 38 204-241 601-638 (877)
347 KOG3364 Membrane protein invol 84.1 18 0.00039 28.3 9.2 73 423-495 29-107 (149)
348 KOG0545 Aryl-hydrocarbon recep 83.6 14 0.0003 32.1 9.3 50 470-519 241-290 (329)
349 KOG4570 Uncharacterized conser 83.5 6.7 0.00014 35.4 7.7 104 120-224 58-165 (418)
350 PF10579 Rapsyn_N: Rapsyn N-te 83.2 4.4 9.5E-05 28.1 5.1 44 438-481 18-65 (80)
351 KOG4570 Uncharacterized conser 83.0 5.3 0.00011 36.0 6.9 97 322-419 59-164 (418)
352 PF09986 DUF2225: Uncharacteri 82.7 9.8 0.00021 32.9 8.5 28 495-522 167-194 (214)
353 PF09477 Type_III_YscG: Bacter 82.3 18 0.00039 26.9 8.2 78 307-385 21-99 (116)
354 COG1747 Uncharacterized N-term 82.0 54 0.0012 32.1 18.8 174 326-505 65-251 (711)
355 TIGR03504 FimV_Cterm FimV C-te 81.8 4.3 9.2E-05 24.6 4.2 26 265-290 4-29 (44)
356 PF11207 DUF2989: Protein of u 81.3 17 0.00036 30.8 8.9 76 436-513 117-198 (203)
357 PF13929 mRNA_stabil: mRNA sta 80.6 44 0.00094 30.2 14.4 115 141-255 143-264 (292)
358 COG5191 Uncharacterized conser 80.5 4.3 9.4E-05 36.4 5.5 80 422-501 103-184 (435)
359 KOG4642 Chaperone-dependent E3 80.3 35 0.00076 29.7 10.5 77 371-452 26-104 (284)
360 COG4455 ImpE Protein of avirul 80.2 11 0.00024 32.2 7.4 75 392-468 3-81 (273)
361 smart00028 TPR Tetratricopepti 80.1 2.9 6.2E-05 22.2 3.2 30 428-457 3-32 (34)
362 PF10579 Rapsyn_N: Rapsyn N-te 79.8 4.7 0.0001 27.9 4.3 45 471-515 18-65 (80)
363 PHA02875 ankyrin repeat protei 78.2 60 0.0013 31.6 13.5 203 77-295 16-230 (413)
364 PRK15180 Vi polysaccharide bio 77.9 33 0.00072 33.1 10.6 132 387-520 286-418 (831)
365 COG4976 Predicted methyltransf 77.8 4.2 9.1E-05 34.8 4.4 55 438-492 7-62 (287)
366 KOG1586 Protein required for f 77.5 21 0.00045 31.0 8.4 85 438-522 85-183 (288)
367 KOG0551 Hsp90 co-chaperone CNS 77.1 18 0.00039 33.1 8.3 93 427-519 82-179 (390)
368 PF04097 Nic96: Nup93/Nic96; 76.7 98 0.0021 32.0 25.1 21 436-457 515-535 (613)
369 KOG2062 26S proteasome regulat 76.7 97 0.0021 32.0 20.5 117 366-487 512-634 (929)
370 KOG4521 Nuclear pore complex, 76.6 1.2E+02 0.0027 33.2 15.3 119 392-516 985-1125(1480)
371 PF14561 TPR_20: Tetratricopep 76.6 25 0.00054 25.4 7.7 54 423-476 19-75 (90)
372 PF10345 Cohesin_load: Cohesin 76.3 1E+02 0.0022 32.0 37.6 184 71-255 36-251 (608)
373 cd08819 CARD_MDA5_2 Caspase ac 75.1 21 0.00045 25.5 6.5 66 110-179 21-86 (88)
374 COG3947 Response regulator con 74.8 15 0.00032 33.0 7.0 61 427-487 280-341 (361)
375 PF10366 Vps39_1: Vacuolar sor 74.4 29 0.00063 26.1 7.8 48 461-508 41-94 (108)
376 smart00386 HAT HAT (Half-A-TPR 74.2 6.8 0.00015 21.2 3.6 30 473-502 1-30 (33)
377 PF08424 NRDE-2: NRDE-2, neces 74.0 77 0.0017 29.6 12.5 76 444-519 49-128 (321)
378 PRK10941 hypothetical protein; 74.0 27 0.00059 31.4 8.9 58 463-520 185-242 (269)
379 KOG2422 Uncharacterized conser 73.5 1E+02 0.0022 30.8 12.9 52 434-485 350-404 (665)
380 PF09477 Type_III_YscG: Bacter 73.4 35 0.00077 25.4 9.2 87 208-298 20-106 (116)
381 PF12862 Apc5: Anaphase-promot 73.1 13 0.00028 27.1 5.7 53 469-521 8-69 (94)
382 KOG4077 Cytochrome c oxidase, 72.9 23 0.00049 27.3 6.7 41 78-118 71-111 (149)
383 KOG4077 Cytochrome c oxidase, 72.6 27 0.00059 26.9 7.0 60 373-434 67-126 (149)
384 KOG1586 Protein required for f 72.5 65 0.0014 28.1 13.4 25 465-489 160-184 (288)
385 KOG4279 Serine/threonine prote 72.4 1.3E+02 0.0027 31.3 17.0 50 434-494 352-401 (1226)
386 PRK13342 recombination factor 72.3 1E+02 0.0022 30.1 15.2 113 175-305 153-275 (413)
387 KOG3824 Huntingtin interacting 72.2 10 0.00022 34.1 5.5 58 438-495 128-186 (472)
388 PF11846 DUF3366: Domain of un 71.7 9.2 0.0002 32.5 5.3 42 449-490 134-175 (193)
389 KOG1464 COP9 signalosome, subu 71.5 48 0.001 29.4 9.3 122 401-522 38-174 (440)
390 COG5159 RPN6 26S proteasome re 71.1 79 0.0017 28.4 18.7 121 166-286 10-151 (421)
391 KOG0991 Replication factor C, 70.2 74 0.0016 27.8 14.5 113 332-449 135-261 (333)
392 PRK13342 recombination factor 69.8 1.1E+02 0.0025 29.7 13.5 117 73-207 154-278 (413)
393 COG2909 MalT ATP-dependent tra 68.9 1.6E+02 0.0036 31.2 25.3 95 137-231 426-534 (894)
394 KOG1308 Hsp70-interacting prot 68.7 6.2 0.00014 36.0 3.6 116 401-519 125-241 (377)
395 PF07163 Pex26: Pex26 protein; 68.7 54 0.0012 29.4 9.0 83 132-216 89-180 (309)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 67.9 48 0.001 25.8 8.0 43 477-519 81-125 (126)
397 KOG4814 Uncharacterized conser 67.7 79 0.0017 32.0 10.8 82 438-519 366-454 (872)
398 KOG3364 Membrane protein invol 67.6 55 0.0012 25.7 7.9 67 456-522 29-100 (149)
399 PF11846 DUF3366: Domain of un 67.6 27 0.00057 29.7 7.3 57 401-457 119-175 (193)
400 PF13762 MNE1: Mitochondrial s 67.2 63 0.0014 25.8 10.0 74 232-305 42-125 (145)
401 PF10255 Paf67: RNA polymerase 66.4 43 0.00094 32.1 8.8 55 465-519 128-190 (404)
402 cd08819 CARD_MDA5_2 Caspase ac 65.9 46 0.001 23.8 7.0 39 241-280 48-86 (88)
403 PRK12798 chemotaxis protein; R 65.8 1.3E+02 0.0028 28.9 22.0 180 340-523 125-325 (421)
404 PF11663 Toxin_YhaV: Toxin wit 65.2 9.1 0.0002 29.7 3.4 34 365-400 105-138 (140)
405 KOG2168 Cullins [Cell cycle co 65.0 1.9E+02 0.0042 30.6 14.4 24 164-187 330-353 (835)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 64.3 61 0.0013 25.2 8.0 41 408-449 81-122 (126)
407 PF13762 MNE1: Mitochondrial s 63.9 74 0.0016 25.4 8.7 79 128-206 41-127 (145)
408 PF10345 Cohesin_load: Cohesin 63.7 1.9E+02 0.0041 30.0 33.3 154 68-222 72-253 (608)
409 PHA03100 ankyrin repeat protei 63.5 1.6E+02 0.0035 29.2 14.4 111 138-254 117-239 (480)
410 COG4976 Predicted methyltransf 63.3 16 0.00036 31.4 4.8 56 468-523 4-59 (287)
411 PF14863 Alkyl_sulf_dimr: Alky 62.5 38 0.00083 27.0 6.6 64 443-510 58-121 (141)
412 KOG0376 Serine-threonine phosp 61.9 17 0.00037 35.0 5.2 98 369-471 18-117 (476)
413 KOG1550 Extracellular protein 61.9 1.9E+02 0.0042 29.5 21.7 179 107-290 228-427 (552)
414 KOG3824 Huntingtin interacting 61.8 23 0.00049 32.0 5.6 52 469-520 126-177 (472)
415 PRK10564 maltose regulon perip 60.5 19 0.0004 32.6 5.0 40 190-229 252-292 (303)
416 PF11848 DUF3368: Domain of un 60.2 32 0.00069 21.3 4.6 32 205-236 13-44 (48)
417 PF13934 ELYS: Nuclear pore co 60.1 1.2E+02 0.0026 26.6 10.5 51 432-484 114-165 (226)
418 KOG1114 Tripeptidyl peptidase 59.7 2.5E+02 0.0055 30.2 14.4 106 331-442 1178-1283(1304)
419 COG1747 Uncharacterized N-term 58.5 2E+02 0.0043 28.6 21.8 162 123-289 63-234 (711)
420 cd00280 TRFH Telomeric Repeat 57.7 93 0.002 26.0 8.0 40 433-473 118-157 (200)
421 cd00280 TRFH Telomeric Repeat 57.7 59 0.0013 27.1 6.9 49 465-514 117-165 (200)
422 PF14853 Fis1_TPR_C: Fis1 C-te 57.7 39 0.00085 21.5 4.8 30 432-461 7-36 (53)
423 PF09670 Cas_Cas02710: CRISPR- 57.6 1.6E+02 0.0035 28.2 11.2 16 339-354 143-158 (379)
424 PF11848 DUF3368: Domain of un 57.2 44 0.00096 20.7 5.2 34 270-303 12-45 (48)
425 KOG2034 Vacuolar sorting prote 57.1 2.7E+02 0.0058 29.7 29.8 304 132-473 364-675 (911)
426 KOG1550 Extracellular protein 57.1 2.3E+02 0.005 28.9 17.4 177 71-255 227-423 (552)
427 PF08424 NRDE-2: NRDE-2, neces 56.4 1.7E+02 0.0038 27.3 15.0 118 107-225 47-185 (321)
428 PF10366 Vps39_1: Vacuolar sor 56.3 84 0.0018 23.6 7.7 28 160-187 40-67 (108)
429 KOG2300 Uncharacterized conser 54.7 2.2E+02 0.0048 28.0 30.7 146 368-516 336-508 (629)
430 KOG0687 26S proteasome regulat 54.2 1.8E+02 0.004 26.9 12.4 157 341-516 36-204 (393)
431 COG4259 Uncharacterized protei 53.1 83 0.0018 23.1 6.2 54 408-462 55-108 (121)
432 TIGR01987 HI0074 nucleotidyltr 52.7 96 0.0021 24.0 7.2 92 69-163 2-96 (123)
433 PF04190 DUF410: Protein of un 52.2 1.8E+02 0.0039 26.2 17.7 80 228-321 89-170 (260)
434 COG2912 Uncharacterized conser 52.2 52 0.0011 29.4 6.3 61 434-494 189-250 (269)
435 KOG3807 Predicted membrane pro 52.0 2E+02 0.0043 26.6 9.9 55 395-449 280-334 (556)
436 PF11817 Foie-gras_1: Foie gra 52.0 74 0.0016 28.3 7.5 56 464-519 183-244 (247)
437 PF04190 DUF410: Protein of un 51.8 1.8E+02 0.0039 26.1 16.3 159 339-521 2-169 (260)
438 smart00777 Mad3_BUB1_I Mad3/BU 51.8 1.1E+02 0.0024 23.7 8.0 40 478-517 82-123 (125)
439 PF07720 TPR_3: Tetratricopept 50.8 47 0.001 19.1 4.3 15 467-481 9-23 (36)
440 PF09670 Cas_Cas02710: CRISPR- 50.6 2.4E+02 0.0052 27.1 11.6 56 167-223 139-198 (379)
441 PF11663 Toxin_YhaV: Toxin wit 50.0 23 0.0005 27.6 3.3 34 169-204 105-138 (140)
442 KOG4279 Serine/threonine prote 49.5 3.2E+02 0.0069 28.7 11.6 42 314-355 185-229 (1226)
443 PF13934 ELYS: Nuclear pore co 49.4 1.8E+02 0.0039 25.5 9.8 74 139-221 91-167 (226)
444 PF12069 DUF3549: Protein of u 49.2 2.3E+02 0.005 26.5 12.5 130 332-466 171-305 (340)
445 PRK10564 maltose regulon perip 49.1 42 0.0009 30.5 5.3 38 262-299 259-296 (303)
446 PF04781 DUF627: Protein of un 49.0 1.1E+02 0.0025 23.0 6.9 28 398-425 4-31 (111)
447 KOG2034 Vacuolar sorting prote 48.3 3.7E+02 0.0081 28.7 23.7 66 202-277 366-433 (911)
448 PF14689 SPOB_a: Sensor_kinase 48.0 50 0.0011 21.8 4.4 27 392-418 25-51 (62)
449 KOG2659 LisH motif-containing 47.7 1.9E+02 0.0041 25.2 9.9 115 386-503 22-148 (228)
450 PF14689 SPOB_a: Sensor_kinase 47.7 58 0.0013 21.5 4.6 8 206-213 35-42 (62)
451 smart00777 Mad3_BUB1_I Mad3/BU 47.6 1.2E+02 0.0027 23.5 7.0 39 410-449 83-122 (125)
452 COG0735 Fur Fe2+/Zn2+ uptake r 47.2 99 0.0021 24.8 6.8 64 77-141 7-70 (145)
453 TIGR01503 MthylAspMut_E methyl 46.0 2.6E+02 0.0057 27.3 10.2 47 174-223 69-115 (480)
454 KOG0686 COP9 signalosome, subu 45.8 2.8E+02 0.0061 26.6 12.6 63 160-222 151-215 (466)
455 cd08326 CARD_CASP9 Caspase act 45.0 78 0.0017 22.5 5.2 35 139-175 43-77 (84)
456 KOG0403 Neoplastic transformat 44.5 3.1E+02 0.0067 26.7 17.9 362 130-508 218-631 (645)
457 COG0735 Fur Fe2+/Zn2+ uptake r 44.2 1.3E+02 0.0029 24.1 7.1 62 181-243 8-69 (145)
458 PF07163 Pex26: Pex26 protein; 43.9 1.5E+02 0.0032 26.8 7.6 86 97-182 89-181 (309)
459 PRK14956 DNA polymerase III su 43.5 3.4E+02 0.0074 27.0 10.9 96 373-491 184-280 (484)
460 PF12862 Apc5: Anaphase-promot 43.5 1.2E+02 0.0027 21.9 6.9 20 468-487 50-69 (94)
461 PF11817 Foie-gras_1: Foie gra 43.0 1.1E+02 0.0024 27.2 7.2 55 395-449 183-241 (247)
462 PF03745 DUF309: Domain of unk 42.8 80 0.0017 20.9 4.7 46 103-148 11-61 (62)
463 KOG2471 TPR repeat-containing 42.6 3.5E+02 0.0076 26.8 14.0 106 401-506 251-382 (696)
464 KOG4567 GTPase-activating prot 42.6 2.7E+02 0.006 25.6 9.3 43 180-222 264-306 (370)
465 PF04034 DUF367: Domain of unk 42.3 1.6E+02 0.0035 22.9 7.6 58 426-484 66-124 (127)
466 PF11207 DUF2989: Protein of u 41.8 2.2E+02 0.0048 24.3 16.9 70 407-478 123-197 (203)
467 PF12926 MOZART2: Mitotic-spin 41.7 1.3E+02 0.0028 21.5 6.8 42 112-153 29-70 (88)
468 COG2912 Uncharacterized conser 41.0 94 0.002 27.9 6.1 57 463-519 185-241 (269)
469 KOG2300 Uncharacterized conser 40.9 3.7E+02 0.008 26.6 31.7 287 72-360 70-437 (629)
470 PF11838 ERAP1_C: ERAP1-like C 40.8 3E+02 0.0065 25.5 13.4 113 69-184 143-262 (324)
471 COG5187 RPN7 26S proteasome re 40.5 2.9E+02 0.0062 25.2 11.2 141 377-520 60-219 (412)
472 PF09454 Vps23_core: Vps23 cor 39.9 73 0.0016 21.3 4.2 50 88-138 5-54 (65)
473 PRK11619 lytic murein transgly 39.8 4.7E+02 0.01 27.4 36.2 362 127-514 100-497 (644)
474 PF12926 MOZART2: Mitotic-spin 39.5 1.3E+02 0.0029 21.4 5.4 43 77-119 29-71 (88)
475 PF15297 CKAP2_C: Cytoskeleton 39.0 1.6E+02 0.0035 27.5 7.5 63 442-504 119-186 (353)
476 PF12968 DUF3856: Domain of Un 37.7 1.9E+02 0.0041 22.3 11.4 48 402-449 21-78 (144)
477 KOG0686 COP9 signalosome, subu 37.5 3.8E+02 0.0083 25.8 13.7 60 230-289 151-216 (466)
478 COG4941 Predicted RNA polymera 36.4 3.6E+02 0.0079 25.2 11.5 117 372-494 273-400 (415)
479 PF10475 DUF2450: Protein of u 36.1 2.1E+02 0.0045 26.3 8.0 113 235-351 104-221 (291)
480 PRK09462 fur ferric uptake reg 35.9 2E+02 0.0043 23.1 7.0 62 80-142 6-68 (148)
481 KOG0545 Aryl-hydrocarbon recep 35.7 3.2E+02 0.0069 24.3 8.2 75 429-503 233-308 (329)
482 KOG0292 Vesicle coat complex C 35.1 5.4E+02 0.012 27.7 11.0 75 332-417 625-699 (1202)
483 KOG1839 Uncharacterized protei 35.0 3.7E+02 0.008 30.2 10.4 121 400-521 942-1085(1236)
484 PRK09857 putative transposase; 34.9 2.4E+02 0.0051 26.0 8.1 54 472-525 219-272 (292)
485 PF06957 COPI_C: Coatomer (COP 34.8 1.9E+02 0.004 28.2 7.5 33 460-492 301-333 (422)
486 PF14669 Asp_Glu_race_2: Putat 34.4 2.9E+02 0.0063 23.5 15.3 48 306-353 146-207 (233)
487 PF09454 Vps23_core: Vps23 cor 34.4 89 0.0019 20.9 3.9 33 192-224 6-38 (65)
488 KOG1524 WD40 repeat-containing 34.3 2.4E+02 0.0053 28.0 8.0 23 393-415 576-598 (737)
489 KOG0292 Vesicle coat complex C 34.2 41 0.00088 35.3 3.2 48 436-487 653-700 (1202)
490 PRK11639 zinc uptake transcrip 33.9 2.3E+02 0.0049 23.5 7.2 61 82-143 17-77 (169)
491 KOG4567 GTPase-activating prot 33.8 3.4E+02 0.0074 25.0 8.4 71 111-184 263-343 (370)
492 PF08780 NTase_sub_bind: Nucle 33.2 2.3E+02 0.005 22.0 7.0 93 68-163 2-96 (124)
493 KOG0991 Replication factor C, 33.1 3.4E+02 0.0075 23.9 14.1 63 249-313 228-290 (333)
494 PF10255 Paf67: RNA polymerase 33.1 1.2E+02 0.0027 29.1 6.1 56 232-287 125-191 (404)
495 KOG1310 WD40 repeat protein [G 32.8 1.4E+02 0.0029 29.7 6.2 31 460-490 446-476 (758)
496 PRK02287 hypothetical protein; 32.7 2.9E+02 0.0062 22.9 7.7 57 427-484 108-165 (171)
497 PF04781 DUF627: Protein of un 32.5 2.2E+02 0.0048 21.6 9.4 41 477-517 62-102 (111)
498 PRK11639 zinc uptake transcrip 32.3 2.7E+02 0.0059 23.0 7.4 59 185-244 17-75 (169)
499 KOG2758 Translation initiation 32.1 4.2E+02 0.0091 24.6 16.2 169 310-487 18-195 (432)
500 COG4259 Uncharacterized protei 32.1 2.1E+02 0.0045 21.1 5.5 41 114-154 60-100 (121)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-72 Score=590.60 Aligned_cols=517 Identities=34% Similarity=0.560 Sum_probs=482.2
Q ss_pred CeeccCCCCcchhHHHHHHhhhcCchhHHHHHHHHHhhhccC------------------------ccccccCCCCCCCC
Q 009782 1 MVTILYPPSSFHTSLVIIHCGSKNKRSRKQRRQKQQQISRNR------------------------ITTFSSYPKSSPTP 56 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~p~~ 56 (526)
|...|+.|+..+|++++++|+....... ..+.+....... ...+... +.|+.
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~~~d~ 253 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLAR--GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--PRRDC 253 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhh--HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC--CCCCc
Confidence 4456899999999999999976655443 111111111111 0111222 35677
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 009782 57 LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136 (526)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 136 (526)
.+|+.++..+++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++|+.+|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 216 (526)
+++|++++|.++|++|..++. .+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~--~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDA--VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCe--eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999999987655 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|..+|++|.. ++.||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 6999999
Q ss_pred HHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CC
Q 009782 297 AISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SK 370 (526)
Q Consensus 297 ~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~ 370 (526)
||+.+|.+| |+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|++||.+| |+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999 899999999999999999999999999999999999999999999999 99999999999994 77
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~- 648 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI- 648 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH-
Confidence 7999999999999999999999999999999999999999999999966799999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 451 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
+.|+..||..+|++|+.+|...|+.+.++...+++++++|++...|..|.++|...|+|++|.++.+.|.++|+++
T Consensus 649 ~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-71 Score=566.23 Aligned_cols=465 Identities=33% Similarity=0.596 Sum_probs=450.4
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 009782 58 LTNQKAFPKTKLQALDSIIQDLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136 (526)
Q Consensus 58 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 136 (526)
.++..+..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45666667788899999999999999765 78999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 216 (526)
++.|++++|.++|++|..++ ..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~--~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERN--LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCC--eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999998754 4999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
+..+.+.|+.||..+|++|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CC
Q 009782 297 AISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SK 370 (526)
Q Consensus 297 ~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~ 370 (526)
||+.++.+| |+++.|.+++..+.+.|+.||..++++++++|+++|++++|.++|++|.++|..+||+||.+| |+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 999999999 899999999999999999999999999999999999999999999999999999999999995 67
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~- 485 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI- 485 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH-
Confidence 7999999999999999999999999999999999999999999999987799999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 451 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
+.++..|+..+|++++.+|...|+++.|..++++++++.|++..+|..|+.+|.+.|++++|.+++++|.++|++
T Consensus 486 ~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-69 Score=565.56 Aligned_cols=516 Identities=27% Similarity=0.416 Sum_probs=468.7
Q ss_pred eeccCCCCcchhHHHHHHhhhcCchhH-HHHHHHHHhh-hccC--------------------ccccccCCCCCCCCccc
Q 009782 2 VTILYPPSSFHTSLVIIHCGSKNKRSR-KQRRQKQQQI-SRNR--------------------ITTFSSYPKSSPTPLLT 59 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~p~~~~~ 59 (526)
...|++|+..+|..++++|........ .+.+...... .... ...+... +.|+..+|
T Consensus 78 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m--~~~d~~~~ 155 (857)
T PLN03077 78 QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM--PERDLFSW 155 (857)
T ss_pred HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcC--CCCCeeEH
Confidence 446789999999999999976655443 2222111100 0000 0111222 35788899
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc
Q 009782 60 NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139 (526)
Q Consensus 60 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 139 (526)
+.++..+++.|++++|+++|+.|...|+.||..||+.++++|+..++++.+.+++..+.+.|+.|+..++++|+.+|+++
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
|++++|.++|++|...+. .+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..
T Consensus 236 g~~~~A~~lf~~m~~~d~--~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 236 GDVVSARLVFDRMPRRDC--ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred CCHHHHHHHHhcCCCCCc--chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999999987665 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 009782 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 299 (526)
|.+.|+.||..+||+|+.+|++.|++++|.++|++|..+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CCchH
Q 009782 300 SILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHE 373 (526)
Q Consensus 300 ~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~~~ 373 (526)
.++.+| |+++.+.++++.+.+.|..++..++++++++|++.|++++|.++|++|.++|..+|+++|.++ ++.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 999998 899999999999999999999999999999999999999999999999999999999999994 67789
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 374 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.+|..+++.|+++|+++|++++|.++| +.+
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f-~~~ 550 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSH 550 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHH-Hhc
Confidence 9999999986 59999999999999999999999999999999988 99999999999999999999999999999 555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCC
Q 009782 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE-PDNEHNFELLIKIYGNAGRLDDVERVERMLV-DRGLEF 526 (526)
Q Consensus 454 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~ 526 (526)
.||..+|++++.+|++.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|++|. +.|+.|
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 7888999999999999999999999999988743 3346779999999999999999999999998 678765
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-64 Score=517.88 Aligned_cols=470 Identities=21% Similarity=0.269 Sum_probs=427.5
Q ss_pred CCCccccccCCCCchHHHHHHHHHHHHHHhhCCCC--------------------------------CChhhHHHHHHHH
Q 009782 54 PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT--------------------------------VQTETFASLLETC 101 (526)
Q Consensus 54 p~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~--------------------------------~~~~~~~~ll~~~ 101 (526)
++...|...+..+++.|++++|+++|+.|.+.|+. ||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34445556666667788889999999999887753 6888999999999
Q ss_pred HccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--CCcccHHHHHHHHHhcCChHHHH
Q 009782 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--AFAFPWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~ 179 (526)
++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+ |+..+|+++|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764 56799999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR--FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 257 (526)
++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 67899999999999999999999999999999986
Q ss_pred ----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHH
Q 009782 258 ----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIA 330 (526)
Q Consensus 258 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 330 (526)
++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+| |+.++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 566999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hHHHHHHHhcCChHHHHHHhccCC----CCChhHHHHHHHhc---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 009782 331 NSLIVVYSKDGKLDQACWLFDHMP----QKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403 (526)
Q Consensus 331 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 403 (526)
+++|.+|++.|++++|.++|++|. .||..+|++||.+| |+.++|.++|++|...|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999995 59999999999995 67799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----c-------------------CChHHHHHHHHhhc--CCCCC
Q 009782 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----A-------------------GLIDEAYSMIVEKM--EFEAS 458 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~--~~~p~ 458 (526)
|++++|.+++++|.+. |+.||..+|+.++..|.+ + +..++|..+|.+++ |+.||
T Consensus 768 G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999988 999999999999876432 1 12467888885544 78999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
..+|+.++.+++..+..+.+..+++.+.. -.+++..+|+.|+.++.+. .++|..++++|...|+.|
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 99999999888888899888888877653 3456678899999998432 368999999999999976
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-60 Score=489.07 Aligned_cols=438 Identities=16% Similarity=0.217 Sum_probs=408.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhcc-CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHH
Q 009782 86 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL-RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164 (526)
Q Consensus 86 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 164 (526)
...++...|..++..+++.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~ 442 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM 442 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence 3456788999999999999999999999999999885 57788889999999999999999999999987 66699999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHH--cCCCCcHHHHHHHHHHh---hhhHHHHHHH
Q 009782 245 IVKARTVFDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL--NGFDPDPVAISSILANA---SLLRIGAQVH 315 (526)
Q Consensus 245 ~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~---~~~~~a~~~~ 315 (526)
+++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+| |++++|.+++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999996 48999999999999999999999999999987 58999999999999998 8999999999
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC----CChhHHHHHHHhc---CCchHHHHHHHHHHHCCCCC
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~---~~~~~a~~~~~~m~~~~~~p 388 (526)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|++++.+| ++.++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999984 8999999999995 66689999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc--CCCCCHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM--EFEASPVVWGALL 466 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~l~ 466 (526)
|..+|+.|+.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|.++. +..||..+|+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999887 999999999999999999999999999995443 7899999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHccC-CCCcchHHHHHHHHHh----c-------------------CChHHHHHHHHHHHhC
Q 009782 467 YACYLHGNVCMGETAAQKLFELE-PDNEHNFELLIKIYGN----A-------------------GRLDDVERVERMLVDR 522 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 522 (526)
.+|++.|++++|.++++++.+.. .+|..+|+.++..+.+ + +..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999854 3457779988866432 2 2346799999999999
Q ss_pred CCCC
Q 009782 523 GLEF 526 (526)
Q Consensus 523 g~~~ 526 (526)
|++|
T Consensus 842 Gi~P 845 (1060)
T PLN03218 842 GTLP 845 (1060)
T ss_pred CCCC
Confidence 9987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.8e-56 Score=453.07 Aligned_cols=407 Identities=25% Similarity=0.408 Sum_probs=334.6
Q ss_pred cCCCCcchhHHHHHHhhhcCchhH-HHHHHHHHh-hhccC--------------------ccccccCCCCCCCCcccccc
Q 009782 5 LYPPSSFHTSLVIIHCGSKNKRSR-KQRRQKQQQ-ISRNR--------------------ITTFSSYPKSSPTPLLTNQK 62 (526)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--------------------~~~~~~~~~~~p~~~~~~~~ 62 (526)
+.+|+..+|++++.+|+....... .+.+..... ..... ...|... +.|+..+|+.+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~~~~~~t~n~l 195 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM--PERNLASWGTI 195 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC--CCCCeeeHHHH
Confidence 367888999999999987766554 222221111 01000 0112222 34788889999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 63 AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
+..+++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+.+|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
++|.++|++|...+. .+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 276 ~~A~~vf~~m~~~~~--vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 276 EDARCVFDGMPEKTT--VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHHhCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999987655 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 009782 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302 (526)
Q Consensus 223 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 302 (526)
.|+.||..+|++|+++|++.|++++|.++|++|.++|+.+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHh---hhhHHHHHHHHHHHH-hCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHH
Q 009782 303 ANA---SLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378 (526)
Q Consensus 303 ~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~ 378 (526)
.+| |.++++.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~------------------------ 489 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP------------------------ 489 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC------------------------
Confidence 777 677777777777764 4777777777777777777777777777666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
+.|+..+|++|+.+|...|+++.|..+++++. ++.| +..+|..|++.|++.|++++|.+++
T Consensus 490 -------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 490 -------FKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 66777777777777777777777777777664 4455 3567777777777777777777777
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-29 Score=266.24 Aligned_cols=446 Identities=11% Similarity=0.027 Sum_probs=324.4
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 65 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+.+.|++++|+.+++.+.... +.++.++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 3445566666666666665543 2356666777777777777777777777776643 4445566666777777777777
Q ss_pred HHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 145 AHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 145 a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
|.+.|+++...+|. ..++..+...+.+.|++++|...++++.+.+ +.+...+..+...+...|++++|..+++.+.+.
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777655443 3566677777777777777777777776643 344556667777777778888888887777665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc-HHHHH
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD-PVAIS 299 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 299 (526)
. +.+...|..+..+|.+.|++++|...|+.+.+ .+...+..+..++.+.|++++|...++++.+.. |+ ...+.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 3 45666777788888888888888888877653 345567777778888888888888888777642 33 33333
Q ss_pred HHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHh---cCCc
Q 009782 300 SILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKD 371 (526)
Q Consensus 300 ~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~---~~~~ 371 (526)
.+...+ |+.+.|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.+ |+..++..+... .|+.
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 333332 77888888888877765 34566677788888888888888888887764 444444444333 5777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+. .+++...+..+...+...|+ .+|++.+.+
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 88888888887742 345667888888888889999999999888864 35577888888888888888 778888877
Q ss_pred hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 452 KMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 452 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+...|+. .++..+...+...|++++|.+.++++++..|.++.++..++.+|.+.|++++|.+++++|++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 87777754 67778888888899999999999999999998888999999999999999999999988863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=4e-28 Score=260.87 Aligned_cols=457 Identities=12% Similarity=0.027 Sum_probs=313.8
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhc----------------
Q 009782 58 LTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL---------------- 121 (526)
Q Consensus 58 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------- 121 (526)
.+..+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|.+.++.+.+..
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 3444444455556666666666665544322 33444444444444555555555444444322
Q ss_pred -----------------cCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHH
Q 009782 122 -----------------LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYF 183 (526)
Q Consensus 122 -----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 183 (526)
.+.+..++..+...+...|++++|.+.|+++...+|+ ...+..+...+...|++++|.+.|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1344555666666666666666666666665544432 2345555666666666666666666
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCc
Q 009782 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDL 260 (526)
Q Consensus 184 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 260 (526)
++.+.+ +.+..++..+...+...|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+.
T Consensus 524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 601 (899)
T TIGR02917 524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601 (899)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 666543 2344556666666666677777777766666554 34455566667777777777777777766653 345
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHH
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (526)
..|..+..++...|++++|...|+++.+.. +.+...+..+...+ |+.++|...++.+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 667777777778888888888877776643 11222233232222 77788888887777653 33466777788888
Q ss_pred HhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009782 338 SKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
...|++++|..+++.+.+ .+...+..+... .|++++|...++++... .|+..++..+..++.+.|+.++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888877764 233344443333 57888999999998884 4555777888889999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++.+.+. .+.+...+..+...|...|++++|.+.|.+.+...|+ +..+..+...+...|+ ++|+..++++++..|
T Consensus 758 ~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 99998874 4557888899999999999999999999888877774 5788999999999999 889999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+++..+..++.+|.+.|++++|.++++++.+.+.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999988664
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.7e-22 Score=183.79 Aligned_cols=432 Identities=14% Similarity=0.127 Sum_probs=301.0
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
-+.|++++|.+.-...-+.+.. +....-.+-..+.+..+.+....--....+.. +--..+|..+.+.+-..|+++.|+
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHH
Confidence 3556677766655544444322 33333333334444555555444333333322 334567777777777777777777
Q ss_pred HHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH-HHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 147 QVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP-RVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
.+++.+.+.+|+ ...|.-+..++...|+.+.|...|.+..+ +.|+..... -+...+...|++++|..-+.+.++..
T Consensus 137 ~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 137 ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 777777776654 36677777777777777777777777765 345544332 23334445677777777777666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHH-HH
Q 009782 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI-SS 300 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ 300 (526)
+-=...|+.|...+-..|++..|+..|++..+-|+ ..|-.|...|-..+.++.|...|.+.... +|+.... ..
T Consensus 215 -p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gN 291 (966)
T KOG4626|consen 215 -PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGN 291 (966)
T ss_pred -CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccc
Confidence 11234566777777777777777777777766433 46667777777777777777777766553 5554322 22
Q ss_pred HHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-hhHHHHHHHh---cCCc
Q 009782 301 ILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-VVSWNSIIHA---HSKD 371 (526)
Q Consensus 301 ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~ 371 (526)
+-.-+ |.++.|...+++.++.... -+..|+.|..++-..|++.+|...|.+... |+ ..+.+.|-.. .++.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 11111 7777777777777665422 245788888888888888888888887764 22 2233333333 5777
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHH
Q 009782 372 HEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
++|..+|....+ +.|... ..+.|...|-++|++++|...+++.. .+.|+ ...|+.+...|...|+.+.|.+.+
T Consensus 371 e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 371 EEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 888888888777 677654 78889999999999999999999998 57886 678999999999999999999999
Q ss_pred HhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 450 VEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 450 ~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
.+++.++|.. ..++.|...|..+|+..+|++.|+.++++.|+.+.+|..+..++--..+|.+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999976 8999999999999999999999999999999999999999888765555544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.7e-20 Score=202.56 Aligned_cols=437 Identities=11% Similarity=0.060 Sum_probs=330.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
....+.+...++........|+... ...-.++...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344556666665544433333221 233456678899999999999999865 55788899999999999999999999
Q ss_pred HhccccCCCCcc---cHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHH
Q 009782 149 FDQMSNRTAFAF---PWNS------------LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213 (526)
Q Consensus 149 ~~~~~~~~~~~~---~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 213 (526)
|++....+|+.. .|.. ....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 999877665421 1222 2346778999999999999999863 33455677788899999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------cccHHHHHHHHHhCCChHHHHH
Q 009782 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD------------LISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 214 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~ 281 (526)
++.|+++.+.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|.+
T Consensus 405 ~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 405 ERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999874 445566777777774 567899999998775421 2245567778889999999999
Q ss_pred HHHHHHHcCCCCcHHHH-HHH---HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC-
Q 009782 282 IFRGMILNGFDPDPVAI-SSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK- 356 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~-~~l---l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 356 (526)
.|++..+. .|+.... ..+ ....|+.++|...++.+.+... .+...+..+...+...|+.++|...++.+...
T Consensus 483 ~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 483 LQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 99999885 4553322 222 2223999999999999887543 34445555666778899999999999988642
Q ss_pred ---ChhHH------------HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 009782 357 ---DVVSW------------NSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421 (526)
Q Consensus 357 ---~~~~~------------~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 421 (526)
+.... ...+...|+.++|..+++. .+.+...+..+...+.+.|+.++|.+.|+.+.+.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-- 632 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-- 632 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 11111 1112236888999998872 3445567788899999999999999999999874
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc------c
Q 009782 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE------H 494 (526)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~ 494 (526)
-+.+...+..++..|...|++++|++.+.+.+...|+. ..+..+..++...|++++|.+.++++++..|+++ .
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 34468889999999999999999999997777777754 6677788889999999999999999998776543 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+..++.++...|++++|.+.|++..
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677999999999999999999885
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.2e-20 Score=203.70 Aligned_cols=446 Identities=12% Similarity=0.058 Sum_probs=294.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+.+.|++++|++.++.+.+..+.................++.++|.+.++.+.+.. +.+...+..+...+...|+.++|
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH
Confidence 44567888888888888765432211111111122234577888888888887764 55666777777888888888888
Q ss_pred HHHHhccccCCCC------------------c---ccH----------------------------------HHHHHHHH
Q 009782 146 HQVFDQMSNRTAF------------------A---FPW----------------------------------NSLISGYA 170 (526)
Q Consensus 146 ~~~~~~~~~~~~~------------------~---~~~----------------------------------~~li~~~~ 170 (526)
+..|+++....+. . ..+ ......+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 8887766332110 0 000 01123455
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHH------------HHHHH
Q 009782 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVL------------NALVD 237 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~ 237 (526)
..|++++|+..|++..+.. +-+...+..+..++.+.|++++|...|++..+..... ....+ .....
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 6788888888888887642 2355677777788888888888888888877654221 11111 12234
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH-HHHHHHHH----------
Q 009782 238 MYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-VAISSILA---------- 303 (526)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~---------- 303 (526)
.+.+.|++++|...|+++.+ .+...+..+...+...|++++|++.|++..+.. |+. ..+..+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHH
Confidence 56678888888888877764 244566677788888888888888888877642 321 11111110
Q ss_pred -----------------------------------HhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHH
Q 009782 304 -----------------------------------NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348 (526)
Q Consensus 304 -----------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 348 (526)
..|+.++|...++..++.... +...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 115556666666666554322 34455566667777777777777
Q ss_pred HhccCCC--CC-hhHH---HHHHHhcCCchHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHH
Q 009782 349 LFDHMPQ--KD-VVSW---NSIIHAHSKDHEALIYFEQMERDGVLPDHL---------TFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 349 ~~~~~~~--~~-~~~~---~~li~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
.++++.+ |+ ...+ ..++...++.++|...++.+......++.. .+..+...+...|+.++|.+++
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 7766543 22 1111 112222455666766666543322222211 1223455667778888888776
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
+. .+++...+..+...+.+.|++++|++.|.+.+...|+ ...+..++..+...|++++|++.++++.+..|++
T Consensus 597 ~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 597 RQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred Hh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 61 2446667788999999999999999999888888885 4888999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 493 EHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++..++.++...|++++|.++++++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999998764
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.3e-21 Score=178.62 Aligned_cols=420 Identities=15% Similarity=0.173 Sum_probs=335.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 172 (526)
...+.+...+.|++++|++--...-... +.+....-.+-..+....+.+....--.......| ...+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4456666778899999998666554432 33333333444556666666665544433333333 237899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGDIVKART 250 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 250 (526)
|++++|+..++.+.+. +| ....|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+...+-..|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999985 44 4568999999999999999999999998876 44433 33445555566899999999
Q ss_pred HHhhcCC--CC-cccHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC
Q 009782 251 VFDRIGN--KD-LISYNSMLTGYIHHGLLVEAFDIFRGMILNG--FDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 251 ~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 325 (526)
.+.+..+ |. .+.|+.|...+-..|+...|+..|++..... ..+-......++...+.++.|...+.+...... -
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n 284 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-N 284 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-c
Confidence 9987765 33 3689999999999999999999999988742 222223445566666888888888877766542 2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH-LTFVSLLS 398 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~ 398 (526)
....+..+...|-..|.++-|+..|++..+ |+ ...|+.|-.+ .|+..+|.+.+++... +.|+. ...+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 456777788889999999999999999875 44 3578888777 5888999999999888 56665 48899999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVC 476 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 476 (526)
.+...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..|+++++++|.. ..|+.+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999985 5564 6778999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.|++.+.+++..+|.-..++..|+.+|...|+..+|++-+++..+-..
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999876543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.2e-18 Score=180.22 Aligned_cols=209 Identities=11% Similarity=-0.063 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
..|++++|+..|+...+..+. +..++..+..++...|++++|+..+++..+.. +.|...+..+ .. .++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~---i~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA---IPVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH---hccChhHHH
Confidence 348899999999999988766 58888999999999999999999999998874 3444444443 22 288999999
Q ss_pred HHhccccCCCCc-ccHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCcchHHHH-HHHHhccCChHHHHHHH
Q 009782 148 VFDQMSNRTAFA-FPWNSLISG--------YAELGEYEDAIALYFQMEEEGVEPDQFTFPRV-LKACAGLGLIRVGEKVH 217 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~ 217 (526)
+++++....|+- .++..+... |.+. ++|.+.++ .......|+..+.... .+.|...|+++.|++++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999998887753 445555554 5544 55555555 3333333445544444 88899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 218 LDAVRFGFGFDGFVLNALVDMYAK-CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 218 ~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
.++.+.+ +.+......|...|.. .++ +++..+++...+.+...+..++..|.+.|+.++|.++++++..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 9999887 4445556667778877 466 8888887765556788888999999999999999988888753
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.1e-20 Score=179.14 Aligned_cols=296 Identities=16% Similarity=0.068 Sum_probs=146.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD---GFVLNALVDMYAKCGD 244 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 244 (526)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555666666666665532 12233455555555666666666666665554321111 2345566666666677
Q ss_pred HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------- 179 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI----------------------- 179 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-----------------------
Confidence 7777777666654 34456666677777777777777777776654322211100
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSAC 400 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 400 (526)
...+..+...+.+.|++++|...|+++.+ ..| +...+..+...+
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~------------------------------~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALA------------------------------ADPQCVRASILLGDLA 224 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------------------HCcCCHHHHHHHHHHH
Confidence 01123344555556666665555554331 011 122344444445
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 480 (526)
.+.|++++|.++++++.+. +-.....++..++.+|...|++++|.+.+.+.....|+...+..++..+.+.|++++|..
T Consensus 225 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 5555555555555555432 111112334444555555555555555554444444444444444455555555555555
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCC
Q 009782 481 AAQKLFELEPDNEHNFELLIKIYGN---AGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~ 524 (526)
.++++++..|++.. +..++..+.. .|+.+++..++++|.++++
T Consensus 304 ~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 304 LLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 55555555554332 3333333332 2345555555555554443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.9e-19 Score=180.46 Aligned_cols=390 Identities=13% Similarity=0.025 Sum_probs=244.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~ 172 (526)
+...-..+.+.|+++.|.+.|+..++. .|+...|..+..+|.+.|++++|++.++.....+|+. .+|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334455667788888888888887764 4567778888888888888888888888887776643 5677788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH-------------HHH--------------hCC
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD-------------AVR--------------FGF 225 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-------------~~~--------------~g~ 225 (526)
|++++|+.-|......+- .+......++..+........+...++. ... ...
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 888888877766544321 1111111111110000000011110000 000 000
Q ss_pred CCch-hHHHHHHHH---HHhcCCHHHHHHHHhhcCCC------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 226 GFDG-FVLNALVDM---YAKCGDIVKARTVFDRIGNK------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 226 ~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
.+.. ..+..+... ....+++++|.+.|+..... +...|+.+...+...|++++|...+++..+. .|+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 0000 001111110 12236788999999877642 2356777888888999999999999988875 3442
Q ss_pred H-HHHHHH---HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCc
Q 009782 296 V-AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371 (526)
Q Consensus 296 ~-~~~~ll---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 371 (526)
. .+..+- ...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~k------------------- 424 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQK------------------- 424 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------
Confidence 2 221111 11255666666666555442 22345555566666666666666655554
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 372 HEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
..+ +.|+ ...+..+...+.+.|++++|...+++..+. .+.+...+..+...+...|++++|++.|.
T Consensus 425 ---------al~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 425 ---------SID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ---------HHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333 3343 456667777788888888888888888753 33457778888888888888888888887
Q ss_pred hhcCCCCCH-HH-------HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 451 EKMEFEASP-VV-------WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 451 ~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+.+...|+. .. ++..+..+...|++++|++.+++++++.|++..++..++.+|.+.|++++|.+.|++..+
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777766642 11 111222334468888888888888888888888888888888888998888888887754
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.4e-18 Score=179.62 Aligned_cols=400 Identities=9% Similarity=-0.041 Sum_probs=252.9
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLIS 167 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~ 167 (526)
.++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++.....|. +..+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 366667777778888899999999888887633 455667888888899999999999999987776554 356777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
.+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 8888999999999999988752 33344 7777778888999999999999988875 3455566667778888888898
Q ss_pred HHHHHhhcCCCCcc--------cHHHHHHHHHh-----CCCh---HHHHHHHHHHHHc-CCCCcHH-HHH-------HHH
Q 009782 248 ARTVFDRIGNKDLI--------SYNSMLTGYIH-----HGLL---VEAFDIFRGMILN-GFDPDPV-AIS-------SIL 302 (526)
Q Consensus 248 A~~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-~~~p~~~-~~~-------~ll 302 (526)
|.+.++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 9988887765 211 11112222211 1223 5566666666643 1222211 110 001
Q ss_pred HHhhhhHHHHHHHHHHHHhCCC-CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHH
Q 009782 303 ANASLLRIGAQVHGWVLRRGVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQM 381 (526)
Q Consensus 303 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m 381 (526)
-..++.++|...++.+.+.+.+ |+. ....+..+|...|+ .++|+..|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~----------------------------~e~A~~~l~~~ 298 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ----------------------------PEKAQSILTEL 298 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC----------------------------cHHHHHHHHHH
Confidence 1113444444444444443321 111 11112334444444 45555555554
Q ss_pred HHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHHHhcCChHHH
Q 009782 382 ERDGVLP---DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG----------ISPR---VEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 382 ~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 445 (526)
.+..... .......+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 4321110 123444555566777777777777777765310 0112 12344566677777777777
Q ss_pred HHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 446 YSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 446 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
++.+.+.+...|+. ..+..+...+...|+.++|++.+++++++.|++...+..++.++...|++++|.++++++.+.
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77776666666643 666777777777777777777777777777777777777777777777777777777777654
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=5.4e-18 Score=175.41 Aligned_cols=447 Identities=12% Similarity=0.043 Sum_probs=297.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 56 PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
+.++..+...+.+.|++++|+..+++..+..+ +...|..++..+ +++++|.++++++.+.. +.+..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~ 151 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRS 151 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 44566677778888999999999998887753 333333333333 78888889999988865 4455666655555
Q ss_pred --------HHhcCChhHHHHHHhccccCCCCcccHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 136 --------YATFGLIDEAHQVFDQMSNRTAFAFPWNSL-ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 136 --------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
|.+.++..++++ .+....+|.+.+.... ...|.+.+++++|++.+.++.+.+. .+..-...+..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q 228 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLA 228 (987)
T ss_pred hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 555544444444 2222223323333333 7788888888888888888887652 233334455556665
Q ss_pred -cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC---------------------
Q 009782 207 -LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD--------------------- 259 (526)
Q Consensus 207 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--------------------- 259 (526)
.++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++.. |+
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 355 555555432 2234666667777777777777777777666531 00
Q ss_pred ------------------------------------------------------------------------cccHHHHH
Q 009782 260 ------------------------------------------------------------------------LISYNSML 267 (526)
Q Consensus 260 ------------------------------------------------------------------------~~~~~~li 267 (526)
.....-+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00000000
Q ss_pred HHHHhCCChHHHHHHHHHHHH-----------------------------------------------------------
Q 009782 268 TGYIHHGLLVEAFDIFRGMIL----------------------------------------------------------- 288 (526)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~----------------------------------------------------------- 288 (526)
-...+.|+.++|.++|+....
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 011223333333333332211
Q ss_pred ---c-CCCCc---HHHHHHHHHHh--hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CC
Q 009782 289 ---N-GFDPD---PVAISSILANA--SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD 357 (526)
Q Consensus 289 ---~-~~~p~---~~~~~~ll~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 357 (526)
. +..|+ ...+..+-..+ ++.++|...+....... |+......+...+...|++++|...|+++.. ++
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 0 11122 22222222222 77778888777776654 4444444455566789999999999987664 33
Q ss_pred hhHHHHH---HHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009782 358 VVSWNSI---IHAHSKDHEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433 (526)
Q Consensus 358 ~~~~~~l---i~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 433 (526)
...+..+ ....|+.++|..++++..+.+ |+. ..+..+.......|++++|...+++..+ +.|+...+..+.
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA 616 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARA 616 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 3333222 233688899999999998853 443 3344444455567999999999999985 467888999999
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
.++.+.|++++|+..+.+.+...|+. ..+..+..++...|+.++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999965 77888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 009782 513 ERVERMLVDRG 523 (526)
Q Consensus 513 ~~~~~~m~~~g 523 (526)
...+++..+..
T Consensus 697 ~~~l~~Al~l~ 707 (987)
T PRK09782 697 QHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhcC
Confidence 99999987654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.8e-18 Score=172.61 Aligned_cols=361 Identities=10% Similarity=-0.007 Sum_probs=259.9
Q ss_pred CchHHHHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 66 KTKLQALDSIIQDLESSVQNG--ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
+.++.+|+..--.+....++- -..+..-...++..+.+.|++++|..+++...... +.+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 346667766555554443321 11134456677888889999999999999998875 445566667777778899999
Q ss_pred HHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHH
Q 009782 144 EAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAV 221 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 221 (526)
+|...|+++...+|+ +..+..+...+...|++++|.+.+++..+. .|+ ...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999888765 367888889999999999999999999874 344 5577888889999999999999999887
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 222 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
..... +...+..+ ..+.+.|++++|...++.+.+.+ ...+..+..++...|++++|...+++..+.. |+
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~--- 244 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LD--- 244 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---
Confidence 66432 33333333 34778899999999998876532 2334455677888899999999998887642 32
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHH
Q 009782 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377 (526)
Q Consensus 298 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~ 377 (526)
+...+..+...|...|++++|. .+|...
T Consensus 245 ----------------------------~~~~~~~Lg~~l~~~G~~~eA~------------------------~~A~~~ 272 (656)
T PRK15174 245 ----------------------------GAALRRSLGLAYYQSGRSREAK------------------------LQAAEH 272 (656)
T ss_pred ----------------------------CHHHHHHHHHHHHHcCCchhhH------------------------HHHHHH
Confidence 3344566778888888887632 123444
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 378 FEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 378 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
+++..+ ..|+ ...+..+...+...|++++|...++++.+. -+.+...+..+..+|.+.|++++|.+.+.+.+...
T Consensus 273 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 273 WRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444444 3343 457777788888888888888888888753 22245566777888888888888888887777777
Q ss_pred CCHHH-HHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 457 ASPVV-WGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 457 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
|+... +..+..++...|+.++|...|+++++..|++
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 76533 3345566778888888888888888887774
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=9.8e-19 Score=168.73 Aligned_cols=288 Identities=16% Similarity=0.121 Sum_probs=206.0
Q ss_pred HHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---cchHHHHHHHHhccCCh
Q 009782 135 LYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD---QFTFPRVLKACAGLGLI 210 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~ 210 (526)
.+...|++++|...|+++...+|+. .++..+...+...|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3445667777777777766665533 4566666677777777777777777665321111 13456666677777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--------ccHHHHHHHHHhCCChHHHHHH
Q 009782 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL--------ISYNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 211 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~ 282 (526)
+.|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776543 34566677777777777777777777777654211 1345677778889999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHH
Q 009782 283 FRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362 (526)
Q Consensus 283 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 362 (526)
|+++.+.. |+ +...+..+...|.+.|++++|.+.|+++.
T Consensus 203 ~~~al~~~--p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------- 241 (389)
T PRK11788 203 LKKALAAD--PQ-------------------------------CVRASILLGDLALAQGDYAAAIEALERVE-------- 241 (389)
T ss_pred HHHHHhHC--cC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence 99887642 22 22344567788889999888888877544
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 009782 363 SIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 363 ~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
+.+......++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++
T Consensus 242 --------------------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 242 --------------------EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred --------------------HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCH
Confidence 2111112356788889999999999999999999864 57777778899999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHc
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYL---HGNVCMGETAAQKLFE 487 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 487 (526)
++|.+++.+.+...|+...+..++..+.. .|+.+++...++++++
T Consensus 299 ~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 299 EAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999998888889999889888887664 5588889988888875
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=8.7e-18 Score=170.02 Aligned_cols=328 Identities=11% Similarity=-0.038 Sum_probs=202.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
..++..+.+.|++++|+.+++....... -+...+..++.++...|+++.|...++.+.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3444555555666666666655554321 122233333444445566666666666655543 33344555555555666
Q ss_pred CCHHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHH-HHHHhhhhHHHHHHHHHH
Q 009782 243 GDIVKARTVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-ILANASLLRIGAQVHGWV 318 (526)
Q Consensus 243 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~a~~~~~~~ 318 (526)
|++++|...+++..+ | +...+..+...+...|++++|...++.+......+....+.. .+...|++++|...++.+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666655543 2 234555555566666666666666655544321111111100 000002222222222222
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009782 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398 (526)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 398 (526)
......++......+..++...|++++|...+ ++..+.. +.+...+..+..
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~----------------------------~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTG----------------------------ESALARG-LDGAALRRSLGL 254 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH----------------------------HHHHhcC-CCCHHHHHHHHH
Confidence 22211111222223334445555555555444 4544432 224557778888
Q ss_pred HHhccCCHHH----HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC
Q 009782 399 ACAHLGSVKV----GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG 473 (526)
Q Consensus 399 ~~~~~~~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 473 (526)
.+...|++++ |...++++.+. .+.+...+..+...+.+.|++++|...+.+.+...|+. ..+..+...+...|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999986 89999999863 23367788999999999999999999998889889965 67788889999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++++|+..++++.+..|++...+..++.+|...|++++|.+.|++..+..
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987767777899999999999999999987654
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=7.7e-17 Score=163.53 Aligned_cols=422 Identities=9% Similarity=0.035 Sum_probs=256.7
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
..+.|+++.|++.|++..+..+.-.+..+ .++..+...|+.++|+..++...... +........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45788899999999999877544222344 77888888899999999999888211 22233333446678888999999
Q ss_pred HHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 146 HQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
+++|+++...+|+ +..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999888765 356777788889999999999999998874 5666666445444445666666999999999885
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcccH--HHHHHHHH---------hCCC---hHHHHHHHHHHH
Q 009782 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK---DLISY--NSMLTGYI---------HHGL---LVEAFDIFRGMI 287 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~li~~~~---------~~g~---~~~a~~~~~~m~ 287 (526)
+.+...+..+...+.+.|-...|.++.++-+.- ....+ ...+.-.. ...+ .+.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 556777888889999999999999888775531 00000 00011111 1122 334555555554
Q ss_pred Hc-CCCCcHH-HH-HHH------HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCC-
Q 009782 288 LN-GFDPDPV-AI-SSI------LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD- 357 (526)
Q Consensus 288 ~~-~~~p~~~-~~-~~l------l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 357 (526)
.. +-.|... .| ... +...++..++...++.+...+.+....+-..+.++|...+++++|+.+|+.+..++
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2223321 11 122 22237788888888888888877667777888888888888888888888764321
Q ss_pred --------hhHHHHHHHh---cCCchHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHhccCCHHHHHHH
Q 009782 358 --------VVSWNSIIHA---HSKDHEALIYFEQMERDGV-------------LPDHL-TFVSLLSACAHLGSVKVGERL 412 (526)
Q Consensus 358 --------~~~~~~li~~---~~~~~~a~~~~~~m~~~~~-------------~p~~~-~~~~ll~~~~~~~~~~~a~~~ 412 (526)
......|.-+ -+++++|..+++.+.+.-. .||-. .+..++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1112223333 2444555555555554110 11111 222334444455555555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
++++.. .-+-|......+.+.+...|++.+|.+.++......|+. .+....+.++...|++.+|..+.+.+.+..|+
T Consensus 439 le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 439 LEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 555543 122345555555555555555555555554444445533 44444455555555555555555555555555
Q ss_pred Ccc
Q 009782 492 NEH 494 (526)
Q Consensus 492 ~~~ 494 (526)
+..
T Consensus 517 ~~~ 519 (822)
T PRK14574 517 DIP 519 (822)
T ss_pred chh
Confidence 543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.1e-17 Score=172.91 Aligned_cols=412 Identities=10% Similarity=-0.019 Sum_probs=302.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 56 PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
+......+......|+.++|++++....... +.+...+..+..++.+.|++++|.++++...+.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344445555678899999999999997633 3355678899999999999999999999998864 5567778888999
Q ss_pred HHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCChHHH
Q 009782 136 YATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-FTFPRVLKACAGLGLIRVG 213 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a 213 (526)
+...|++++|+..+++.....|+. . +..+..++...|+.++|+..++++.+. .|+. ..+..+..++...|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999998876643 5 888888999999999999999999985 4544 4556677778888999999
Q ss_pred HHHHHHHHHhCCCCch------hHHHHHHHHHH-----hcCCH---HHHHHHHhhcCC---CCccc---H----HHHHHH
Q 009782 214 EKVHLDAVRFGFGFDG------FVLNALVDMYA-----KCGDI---VKARTVFDRIGN---KDLIS---Y----NSMLTG 269 (526)
Q Consensus 214 ~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~---~~~~~---~----~~li~~ 269 (526)
.+.++.... .|+. .....++.... ..+++ ++|+..++.+.+ .++.. + ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 988876553 2221 11222222222 22234 678877777763 22211 1 111345
Q ss_pred HHhCCChHHHHHHHHHHHHcCCC-CcHHH--HHHHHHHhhhhHHHHHHHHHHHHhCCCC---chhHHhHHHHHHHhcCCh
Q 009782 270 YIHHGLLVEAFDIFRGMILNGFD-PDPVA--ISSILANASLLRIGAQVHGWVLRRGVEW---DLCIANSLIVVYSKDGKL 343 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~--~~~ll~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 343 (526)
+...|++++|...|+++.+.+.. |+... +..+....+++++|...++.+....... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 56779999999999999987632 44322 2222223399999999999987654221 134456667788999999
Q ss_pred HHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH---LTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 344 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
++|..+++.+.+.++.... ++. ...-.|+. ..+..+...+...|+.++|++.++++...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~--------------~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLR--------------LYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred HHHHHHHHHHhhcCCceEe--------------ecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999999887642110000 000 00123442 34566777888999999999999999863
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.+.+...+..+...+...|++++|++.+.+.+...|+. ..+...+..+...|++++|+..++++++..|+++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 45578888999999999999999999999999999975 67777778899999999999999999999999886
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=4.4e-17 Score=165.55 Aligned_cols=386 Identities=9% Similarity=-0.016 Sum_probs=267.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|+..+++.... .|++..|..+..++.+.|++++|.+.++..++.. +.+...+..+..+|...|++++|+.
T Consensus 139 ~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred HcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 557899999999998865 4677889899999999999999999999999875 5567789999999999999999998
Q ss_pred HHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHH-----------------HH---------H-cCCCCCc-chHH
Q 009782 148 VFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQ-----------------ME---------E-EGVEPDQ-FTFP 198 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~-----------------m~---------~-~~~~p~~-~t~~ 198 (526)
.|......++.. .....++..+........+...++. .. . ....++. ..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 886654332211 1111111111110000111111100 00 0 0000110 0111
Q ss_pred HHHHH---HhccCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-cccHHHHHHHH
Q 009782 199 RVLKA---CAGLGLIRVGEKVHLDAVRFG-F-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KD-LISYNSMLTGY 270 (526)
Q Consensus 199 ~ll~~---~~~~g~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~ 270 (526)
.+... ....+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+ |+ ...|..+...+
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 11111 123467899999999998865 2 33456788888899999999999999998865 32 45778888899
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHH
Q 009782 271 IHHGLLVEAFDIFRGMILNGFDPDP-VAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 346 (526)
...|++++|...|++..+.. |+. ..+..+-..+ |++++|...++..++... .+...+..+..++.+.|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988753 432 2333222222 899999999999887653 3556677788888888888888
Q ss_pred HHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 009782 347 CWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425 (526)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 425 (526)
+..|++.. . ..| +...++.+...+...|++++|.+.|+...+. .|+
T Consensus 453 ~~~~~~al----------------------------~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~ 499 (615)
T TIGR00990 453 MATFRRCK----------------------------K--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKE 499 (615)
T ss_pred HHHHHHHH----------------------------H--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCc
Confidence 88877543 2 233 3567888888899999999999999998753 332
Q ss_pred h-h-------HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 426 V-E-------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 426 ~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
. . .++.....+...|++++|.+.+.+.+...|+. ..+..+...+...|++++|++.|+++.++.+..
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 1 1 11222223444699999999998888888866 678889999999999999999999999887653
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5e-15 Score=144.34 Aligned_cols=448 Identities=11% Similarity=0.074 Sum_probs=294.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC---ChhH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG---LIDE 144 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~ 144 (526)
..+++..|+.+|.......+..-+...-.+-.++.+.++.+.|+..|....+.. +.++.++..|...-.... .+..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHH
Confidence 346677777777775544322222222223355567777777777777777654 233333333332222222 2344
Q ss_pred HHHHHhccccC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 009782 145 AHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV--EPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221 (526)
Q Consensus 145 a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 221 (526)
+..++...-.. +-+|+..+.|...|.-.|++..++.+...+..... ..-...|-.+.+++-..|++++|...|.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 55555444322 33457888888888899999999998888776421 1123357778888999999999999988877
Q ss_pred HhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCC
Q 009782 222 RFGFGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGN--K-DLISYNSMLTGYIHHG----LLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 222 ~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~ 292 (526)
+.. +|. ..+-.+...|.+.|+++.+...|+.+.+ | +..+...|...|+..+ ..+.|..++.+..+.- .
T Consensus 335 k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 335 KAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred ccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 653 333 3445678889999999999999988865 2 3456666666666665 4566666666665542 2
Q ss_pred CcHHHHHHHHHHh--hhhHHHHHHH----HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------CCh-
Q 009782 293 PDPVAISSILANA--SLLRIGAQVH----GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------KDV- 358 (526)
Q Consensus 293 p~~~~~~~ll~~~--~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~- 358 (526)
.|...|..+-..+ ++......++ +.+...+..+.+...|.+...+...|++++|...|..... ++.
T Consensus 412 ~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 2333333332222 3433334444 3445667778999999999999999999999999987653 222
Q ss_pred ------hHHHH--HHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH
Q 009782 359 ------VSWNS--IIHAHSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429 (526)
Q Consensus 359 ------~~~~~--li~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (526)
.-||. +....++.+.|.+.|..+.. ..|+-. .|.-++......++..+|...++.+.. ....++..+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ar 567 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNAR 567 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHH
Confidence 12432 33346888999999999988 356544 444444333345788889998888876 455566666
Q ss_pred HHHHHHHHhcCChHHHHHHHH---hhcCCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHccCCCCcc
Q 009782 430 ACMVNLYGRAGLIDEAYSMIV---EKMEFEASPVVWGALLYACYL------------HGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~---~~~~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+...+.+...+..|.+-|. +.....+|..+..+|+..|.. .+..+.|++.|.++++.+|.|..
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 677778888888888877441 222334666666677765542 23467888888888889999888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+-+.++-+++..|++.+|..+|.+.++..
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 88888889999999999999988887653
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.1e-14 Score=127.61 Aligned_cols=413 Identities=15% Similarity=0.118 Sum_probs=252.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc--cCChHHH-HHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ--LKAVEHG-IKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
.+..+..+++.-+++.|.+.|+..+...-..+++.-+- ..++.-| ++-|-.|...| +.+..+| +.|++
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 45667788888899999999888888777777765443 3333322 12233333344 3333344 34554
Q ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
.+ -+|+.. ...+ .+|..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-.. ..+++.+|..
T Consensus 196 Ad--L~~E~~-PKT~--et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis 266 (625)
T KOG4422|consen 196 AD--LLFETL-PKTD--ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS 266 (625)
T ss_pred HH--HHHhhc-CCCc--hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH
Confidence 43 334433 3334 7899999999999999999999999988888999999999998765332 2788899999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 009782 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302 (526)
Q Consensus 223 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 302 (526)
..+.||..|+|+++.+..+.|+++.|.+. |.+++.+|++-|+.|...+|..+|
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHH
Confidence 99999999999999999999988877643 344555555555555555555555
Q ss_pred HHh---hhh-HHHHHHHHHHHH----hCC----CCchhHHhHHHHHHHhcCChHHHHHHhccCCC--------CC---hh
Q 009782 303 ANA---SLL-RIGAQVHGWVLR----RGV----EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--------KD---VV 359 (526)
Q Consensus 303 ~~~---~~~-~~a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~ 359 (526)
..+ ++. ..+..+...+.. +.. +.+...+...|+.|.+..+.+-|..+..-... ++ ..
T Consensus 320 k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 320 KNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred HHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 544 111 112222222221 111 12334455666666677777766665443331 11 12
Q ss_pred HHHHHHHhcC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009782 360 SWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436 (526)
Q Consensus 360 ~~~~li~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 436 (526)
-|.-+....+ ..+.-+.+|+.|+-.-+-|+..+...++++....|.++-.-++|..+..- |..-+......+...+
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence 2333333322 23556677777777767778888888888877777777777777777654 5444433333344444
Q ss_pred HhcC-Ch-------------------HHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCC
Q 009782 437 GRAG-LI-------------------DEAYSMIVEKM-EFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL---EPDN 492 (526)
Q Consensus 437 ~~~g-~~-------------------~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~ 492 (526)
++.. +. .++.+.-.+.+ ..+......+.+.-.+.+.|..++|.+++..+++. .|..
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 4433 11 11111111111 23334456666667778888888888888877542 2433
Q ss_pred cc--hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 493 EH--NFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 493 ~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+. +...+++.-.+.++...|..+++-|...+.
T Consensus 559 p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 33 233555556667777788888877766543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=4.3e-14 Score=143.75 Aligned_cols=420 Identities=9% Similarity=-0.018 Sum_probs=306.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCCh--hHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccH-HHH--HHH
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK--GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW-NSL--ISG 168 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l--i~~ 168 (526)
|...+ ...+.|+++.|.+.|++..+.. |+. .++ .++..+...|+.++|+..+++.....+ ..+ ..+ ...
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n--~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN--ISSRGLASAARA 111 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC--CCHHHHHHHHHH
Confidence 43333 4468899999999999998864 332 344 888888999999999999999984433 333 333 457
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 248 (526)
+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 778899999999999999864 234556677788889999999999999998876 45555665555555556777679
Q ss_pred HHHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH------HHHHHH-----------Hhhhh
Q 009782 249 RTVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA------ISSILA-----------NASLL 308 (526)
Q Consensus 249 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~-----------~~~~~ 308 (526)
++.++++.+ | +...+..+..++.+.|-...|.++..+-... +.+.... ....+. .+.-.
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999998875 3 4567788889999999999998876653211 1111111 111111 01123
Q ss_pred HHHHHHHHHHHHh-CCCCch-hHH----hHHHHHHHhcCChHHHHHHhccCCCCC--hhHH--HHHHHh---cCCchHHH
Q 009782 309 RIGAQVHGWVLRR-GVEWDL-CIA----NSLIVVYSKDGKLDQACWLFDHMPQKD--VVSW--NSIIHA---HSKDHEAL 375 (526)
Q Consensus 309 ~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~li~~---~~~~~~a~ 375 (526)
+.+..-++.+... +..|.. ..| --.+-++...|+..++++.|+.+..+. +..| .++..+ .++.++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555442 222321 122 234567888999999999999998532 2333 223333 58889999
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHHH
Q 009782 376 IYFEQMERDG-----VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG----------ISPR---VEHYACMVNLYG 437 (526)
Q Consensus 376 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~ 437 (526)
.+++++.... ..++......|.-++...+++++|..+++.+.+... -.|| ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 123344467899999999999999999999986311 0122 233455678889
Q ss_pred hcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
..|+..+|++.+.+.....| |......+...+...|....|++.++.+..+.|++..+....+.++...|+|++|..+.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999988888889 55888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 009782 517 RMLVDRG 523 (526)
Q Consensus 517 ~~m~~~g 523 (526)
+.+.+..
T Consensus 508 ~~l~~~~ 514 (822)
T PRK14574 508 DDVISRS 514 (822)
T ss_pred HHHHhhC
Confidence 8887653
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.1e-14 Score=142.07 Aligned_cols=294 Identities=17% Similarity=0.105 Sum_probs=171.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CCc------ccHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-------KDL------ISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (526)
+-++.....|.+...+...|++++|...|+.... +|. .+-..+...+-..++++.|.+.|..+...
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 3334445555555555555555555555544332 111 11223344444445555555555555543
Q ss_pred CCCcHHHHHHHHHH----hhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-C--ChhHHHH
Q 009782 291 FDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-K--DVVSWNS 363 (526)
Q Consensus 291 ~~p~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~ 363 (526)
-|..+..-.=+.+ -+...++...+....... ..++..+..+...+.+...+..|.+-|+.+.+ + ...+|..
T Consensus 526 -hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 -HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred -CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 2332221111111 144444444444444332 23444455555566666666666664443332 1 1123333
Q ss_pred HHHh------c-----------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch
Q 009782 364 IIHA------H-----------SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426 (526)
Q Consensus 364 li~~------~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 426 (526)
+--+ . +..++|+++|.+..... +-|...-+-+.-.++..|++..|..+|....+. ..-..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~ 680 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFE 680 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCC
Confidence 3222 1 11256888888877742 225566777777788888999999999888875 23355
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME---FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
.+|-.+.++|..+|++-.|+++|...++ .+-+....+.|..++...|.+.+|.+.+..+..+.|.++..-..++-+.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 6777888889999999999998855553 2336688888888988999999999998888888888877655544333
Q ss_pred -------------------HhcCChHHHHHHHHHHHhCC
Q 009782 504 -------------------GNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 504 -------------------~~~g~~~~A~~~~~~m~~~g 523 (526)
...+..++|.++|.+|...+
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23345566777777776654
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2e-11 Score=114.52 Aligned_cols=450 Identities=12% Similarity=0.020 Sum_probs=344.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHh----hhccCCChhHHHHHHHHHHh
Q 009782 63 AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP----TNLLRKNKGISSKLLRLYAT 138 (526)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~ 138 (526)
..++.+...|+.|..++++.++. ++.+..++.+....=-..|+.+...++....+ ..|+..+...|-.-...+-+
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34556778888888888888766 45578888777777777888888888776543 46777888888777778888
Q ss_pred cCChhHHHHHHhccccCCCC----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAF----AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 214 (526)
.|.+-.+..+.......+.. -.+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 88887777777766544332 267888888999999999999999988874 3344556666666666778999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 009782 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291 (526)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (526)
.+++++...- +-....|-.....+...||+..|..++...-+. +...|-+-+........++.|..+|.+....+-
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 9999988763 445566666777788889999999998877652 446788888888999999999999998877543
Q ss_pred CCcHHHHHHHH-HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChh-HHHHHHHh
Q 009782 292 DPDPVAISSIL-ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVV-SWNSIIHA 367 (526)
Q Consensus 292 ~p~~~~~~~ll-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~ 367 (526)
.+...+-+.-+ ...++.++|..++++.++.- +.-...|..+.+.+-..++++.|...|..-.+ |+.. .|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 33333333333 34499999999998887753 33356788888999999999999999887765 5544 34444333
Q ss_pred ---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 009782 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444 (526)
Q Consensus 368 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 444 (526)
-+..-.|..+++.-.-++ +-+...|...++.-.+.|+.+.|..++.++.+ ..+.+...|..-|....+-++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchH
Confidence 456678899998877653 23667899999999999999999999999887 466677888888887777777666
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 445 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..+.+ +.. .-|+..+..+...+....+++.|.+.|+++++..|++..+|..+...+.+.|.-++-.+++.+....
T Consensus 806 s~DAL-kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 806 SIDAL-KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 66555 333 4566677778888888999999999999999999999999999999999999988888888887654
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=3.6e-15 Score=133.25 Aligned_cols=445 Identities=14% Similarity=0.090 Sum_probs=292.2
Q ss_pred CCccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHccCChHHHHHHHHHHhhhccCCC----hhHH
Q 009782 55 TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLL-ETCYQLKAVEHGIKLHRLIPTNLLRKN----KGIS 129 (526)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 129 (526)
+...+..+...+.......+|+..++-.++...-|+.-.+..-+ ..+.+.+.+.+|++.|+..+..-...+ ..+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33345555666677778888998888888877777766554333 456677889999999987776432222 3445
Q ss_pred HHHHHHHHhcCChhHHHHHHhccccCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc--------hHHHH
Q 009782 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAF-PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--------TFPRV 200 (526)
Q Consensus 130 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------t~~~l 200 (526)
+.+...+.+.|+++.|+..|+...+..|+.. .||..|. +.--|+-++..+.|..|......||.. .-..|
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~-~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIIC-AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhh-heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5555667889999999999999888888764 4555554 445788888899999987643223222 12222
Q ss_pred HHHHhccC--------ChHHHHHHHH---HHHHhCCCCchhH-------------HH--------HHHHHHHhcCCHHHH
Q 009782 201 LKACAGLG--------LIRVGEKVHL---DAVRFGFGFDGFV-------------LN--------ALVDMYAKCGDIVKA 248 (526)
Q Consensus 201 l~~~~~~g--------~~~~a~~~~~---~~~~~g~~~~~~~-------------~~--------~li~~~~~~g~~~~A 248 (526)
+.-..+.. +-..|++.+- .++.--+.|+-.. +. .-...|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22222111 1112222211 1111112222100 00 112346788999999
Q ss_pred HHHHhhcCCCCcccHHHHHH----H-HHh-CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH----Hh--hhhHHHHHHHH
Q 009782 249 RTVFDRIGNKDLISYNSMLT----G-YIH-HGLLVEAFDIFRGMILNGFDPDPVAISSILA----NA--SLLRIGAQVHG 316 (526)
Q Consensus 249 ~~~~~~~~~~~~~~~~~li~----~-~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~--~~~~~a~~~~~ 316 (526)
.++++-..+.|..+-.+... . |.+ ..++..|.++-+..... |...-..+.. ++ |++++|.+.++
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 98888887766544332221 1 222 33566666665544432 1111111111 11 88999999999
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHH---HHHhcCCchHHHHHHHHHHHCCCCCCH
Q 009782 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNS---IIHAHSKDHEALIYFEQMERDGVLPDH 390 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---li~~~~~~~~a~~~~~~m~~~~~~p~~ 390 (526)
+.+...-......|| +.-.+-..|++++|+..|-++.. .+....-- +.....+..+|++++-+.... ++-|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 988776555555554 34456778999999998876542 22222211 222245667788887766552 34456
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH-
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC- 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~- 469 (526)
....-|...|-+.|+-..|.+.+-+--. -++-+..+...|...|....-+++|+..|+++--+.|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7888999999999999999887665433 3556899999999999999999999999987778899999999888876
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.+.|++..|...|+...+..|.+...+..|++++...|-
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 679999999999999999999999999999999888774
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4.1e-14 Score=126.61 Aligned_cols=416 Identities=13% Similarity=0.114 Sum_probs=285.3
Q ss_pred HHHHccCChHHHHHHHHHHhhhccCCChhHHH-HHHHHHHhcCChhHHHHHHhccccCCCCc------ccHHHHHHHHHh
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS-KLLRLYATFGLIDEAHQVFDQMSNRTAFA------FPWNSLISGYAE 171 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~li~~~~~ 171 (526)
.-|.......+|+..|+-+.+...-|+..... .+.+.+.+.+.+.+|+++++....+-|++ ...+.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 33444556778899999888887777765443 34566778889999999998876664432 334555567789
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC------------chhHHHHHH---
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF------------DGFVLNALV--- 236 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~------------~~~~~~~li--- 236 (526)
.|++++|+.-|+...+. .|+..+-..|+-++...|+-++..+.|..|+.....| +....+.-+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 99999999999998875 5887765556666667899999999999998654332 333333222
Q ss_pred --HHHHhcCC--HHHHH----HHHhhcCCCCcc-------------cHH--------HHHHHHHhCCChHHHHHHHHHHH
Q 009782 237 --DMYAKCGD--IVKAR----TVFDRIGNKDLI-------------SYN--------SMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 237 --~~~~~~g~--~~~A~----~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
.-+-+.+. .+++. ++..-+..|+.. .+. .-...|.+.|+++.|.++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 22222211 12221 222222223221 011 11335789999999999999887
Q ss_pred HcCCCCcHHHHHHH--HHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHH
Q 009782 288 LNGFDPDPVAISSI--LANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362 (526)
Q Consensus 288 ~~~~~p~~~~~~~l--l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 362 (526)
+..-+.....-+.+ +.-. .++..|.++.+..+...- -++.....-...-...|++++|.+.|++....|.....
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 76433322222222 2222 456666666666543321 12222222233445679999999999999987776555
Q ss_pred HHHHh------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009782 363 SIIHA------HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436 (526)
Q Consensus 363 ~li~~------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 436 (526)
+|... .++.++|++.|-++..- +.-+..+...+...|....+...|.+++.+... -++.|+.....|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 55433 79999999999887652 233566777888889999999999999988764 3555899999999999
Q ss_pred HhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH-HHHhcCChHHHHH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK-IYGNAGRLDDVER 514 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~ 514 (526)
-+.|+-..|.+.+-+....-| +..+..-|..-|....-.++|+.+|+++--+.|+-.. |..++. ++.+.|+|.+|.+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k-wqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK-WQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHhcccHHHHHH
Confidence 999999999998878887777 4477777777778888889999999999989998555 777664 5567999999999
Q ss_pred HHHHHHh
Q 009782 515 VERMLVD 521 (526)
Q Consensus 515 ~~~~m~~ 521 (526)
+++....
T Consensus 682 ~yk~~hr 688 (840)
T KOG2003|consen 682 LYKDIHR 688 (840)
T ss_pred HHHHHHH
Confidence 9988754
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.3e-14 Score=132.82 Aligned_cols=193 Identities=19% Similarity=0.150 Sum_probs=141.1
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCCh-hHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDV-VSWNSIIHAH-----SKDHEALIYFEQMERDGVLPDHL-TFVSLLSA 399 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~-----~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 399 (526)
+.+|.++..+|.-+++.+.|++.|++..+.|. .+|.--+.++ ..+|+|+..|+..+. +.|... .|--|.-.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhh
Confidence 44555555555555555555555555554333 3333333331 233555666655443 344333 55667778
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 477 (526)
|.+.++++.|+-.|+++. .+.| +......++..+.+.|+.++|++++++++-.+| ++..--..+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 999999999999999998 4666 677777888889999999999999999998888 45555556777788899999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
|++.++++.++.|++...|..++++|.+.|+.+.|+.-|.-+.+-..
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 99999999999999999999999999999999999988877765543
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.8e-12 Score=114.33 Aligned_cols=349 Identities=13% Similarity=0.106 Sum_probs=233.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 009782 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200 (526)
Q Consensus 123 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 200 (526)
+.+..++..+|.+.|+--..+.|.+++++..... ....+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 5567888999999999989999999998876653 3346788887765433 337888999988899999999999
Q ss_pred HHHHhccCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhhcCC------------CCcccH
Q 009782 201 LKACAGLGLIRV----GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK-ARTVFDRIGN------------KDLISY 263 (526)
Q Consensus 201 l~~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~ 263 (526)
+++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. .|..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999997765 45778889999999999999999999988888754 3334433321 234456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC----CCCcHH---HHHHHHHH---hhhhHHHHHHHHHHHHhCCCCchhHHhHH
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILNG----FDPDPV---AISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCIANSL 333 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~---~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 333 (526)
..-+..|.+..+.+-|.++..-+.... +.|+.. -|..+... ....+.....++.++-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 677778888888888887766554321 333321 23333332 26677777888888888888888999999
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHH
Q 009782 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL---TFVSLLSACAHLGSVKVGE 410 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~ 410 (526)
+++..-.|+++-.-+++.++..-+.. + +.+--++++..|......|+.. -+..+..-|+ ..-.+..+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght-~--------r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e 509 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHT-F--------RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-ADIKEAYE 509 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhh-h--------hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999888888876632110 0 1122344555555544455433 2333332222 11222222
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009782 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASPVVWGALLYACYLHGNVCMGETAAQ 483 (526)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 483 (526)
..-.++.+ ..-.....+...-.+.+.|..++|.+++ ..+ ...|.......++......++...|...++
T Consensus 510 ~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l-~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 510 SQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEML-GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred hhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHH-HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 33334433 2334455667777788999999999988 433 223333444466667778888888988888
Q ss_pred HHHccC
Q 009782 484 KLFELE 489 (526)
Q Consensus 484 ~~~~~~ 489 (526)
-+...+
T Consensus 586 ~a~~~n 591 (625)
T KOG4422|consen 586 LASAFN 591 (625)
T ss_pred HHHHcC
Confidence 886654
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-12 Score=117.94 Aligned_cols=398 Identities=14% Similarity=0.111 Sum_probs=247.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCC-hhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHh
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKN-KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAE 171 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~ 171 (526)
+-..-.-|.+.|.+++|++.|.+.++. .|+ +..|..+..+|...|+++++.+--.+..+.+|+- .++.--.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 444445567788888888888888876 455 6778888888888888888888877777777642 334444455556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH--------HHH-hC--CCCchhHHHHHHHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD--------AVR-FG--FGFDGFVLNALVDMYA 240 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~--------~~~-~g--~~~~~~~~~~li~~~~ 240 (526)
.|++++|+.=+.- ..++..+....-.-.+.+++.. -.+ .+ +-|+.. .|..|.
T Consensus 196 lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~----fi~syf 258 (606)
T KOG0547|consen 196 LGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT----FIASYF 258 (606)
T ss_pred hccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH----HHHHHH
Confidence 6666666443222 2222222222222222222221 111 11 123322 333332
Q ss_pred hcCCHHHHHHHHhhcCCCCcccHHHHHHHHHh--CC---ChHHHHHHHHHHHHc-CCCCcHH---------HHHHHHHHh
Q 009782 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIH--HG---LLVEAFDIFRGMILN-GFDPDPV---------AISSILANA 305 (526)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~-~~~p~~~---------~~~~ll~~~ 305 (526)
..=..+-- ..+..+.......+..++-. .+ .+..|...+.+-... -..++.. ....++.+-
T Consensus 259 ~sF~~~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 259 GSFHADPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred hhcccccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 11000000 00000111112222222111 11 233333333322111 0111111 111122221
Q ss_pred -----hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-----CChhHHHHHHHh-cCCchHH
Q 009782 306 -----SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVVSWNSIIHA-HSKDHEA 374 (526)
Q Consensus 306 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~-~~~~~~a 374 (526)
|+.-.+.+-++..+.....++. .|--+..+|....+.++....|+...+ ||+.....-+.- ++++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 7777888888888776554333 266677788899999999999988775 444444443333 6888999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 375 LIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 375 ~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
..=|++.+. +.|+. ..|..+.-+..+.+.+++++..|++..++ ++--+..|+.....+...+++++|.+.|..++
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999998887 56654 47777777778999999999999999884 66678899999999999999999999998888
Q ss_pred CCCCCH---------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 454 EFEASP---------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 454 ~~~p~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...|+. .+-..++.. .-.+++..|+++++++.+++|....+|..|+......|+.++|+++|++..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777762 222222222 234899999999999999999999999999999999999999999998753
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=2.8e-15 Score=137.01 Aligned_cols=251 Identities=20% Similarity=0.187 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc-CC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 234 ALVDMYAKCGDIVKARTVFDRI-GN----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
.+...+.+.|++++|.+++++. .. .|...|..+.......++++.|.+.++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 4566677778888888877432 22 24445555566666677777777777777664321
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHh---cCCchHHHHHHHHHHH
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEALIYFEQMER 383 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~---~~~~~~a~~~~~~m~~ 383 (526)
++..+..++.. ...+++++|..+++...+ ++...+...+.. .++.+++.++++....
T Consensus 77 -----------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 77 -----------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred -----------------ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 22233444444 566666776666655433 222333333222 4566667777777654
Q ss_pred CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHH
Q 009782 384 DG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPV 460 (526)
Q Consensus 384 ~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 460 (526)
.. ...+...|..+...+.+.|+.++|.+.++++.+. .| |......++..+...|+.+++.+++.......| ++.
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 32 3456778888999999999999999999999974 45 577888999999999999998877744443323 557
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+..+..++...|+.++|+..++++.+..|+|+.....++.++...|+.++|.++.+++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999999999887653
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.7e-12 Score=124.05 Aligned_cols=286 Identities=10% Similarity=0.076 Sum_probs=174.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKAR 249 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 249 (526)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777766654432111 122333344446777888888888777654 34433222 3356777788888888
Q ss_pred HHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCc
Q 009782 250 TVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD 326 (526)
Q Consensus 250 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 326 (526)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 88877765 24456777788888888888888888888877544322 111000
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 406 (526)
...|..++.......+.+...++++.+.+. .+.+......+..++...|+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-----------------------------~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-----------------------------TRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-----------------------------HhCCHHHHHHHHHHHHHCCCH
Confidence 001111222222233344444444444310 223555666777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKL 485 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 485 (526)
++|.+++++..+. +|+... .++.+....++.+++.+..++..+..|+. ..+..+...|.+.|++++|.+.|+++
T Consensus 280 ~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 280 DTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777642 444422 22333345577777777776666777754 55667777777777777777777777
Q ss_pred HccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++..|++.. +..+..++.+.|+.++|.+++++-.
T Consensus 355 l~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 355 LKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777544 6677777777777777777777654
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.4e-11 Score=119.97 Aligned_cols=379 Identities=13% Similarity=0.065 Sum_probs=231.0
Q ss_pred CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHH
Q 009782 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYF 183 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 183 (526)
|+.++|.+++.++++.. +.+...|-+|...|-..|+.+++...+-.....+|. ..-|..+.....+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 77777777777777654 555566777777777777777776666554444332 2556666666677777777777777
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH----HHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 009782 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV----LNALVDMYAKCGDIVKARTVFDRIGN-- 257 (526)
Q Consensus 184 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~-- 257 (526)
+..+.. +++...+---...|-+.|+...|...|.++.....+.|..- .-..++.+...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 766642 23333333444556666777777777777666542222221 22234455555666666666655443
Q ss_pred ---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 258 ---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 258 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
-+...++.++..|.+...++.|.....++......+|..-+..-- .....|
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----------------~~~~~~--------- 364 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----------------RRREEP--------- 364 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----------------hccccc---------
Confidence 233456666666677667776666666665544444443320000 000000
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhHHHHHHHh--cCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHH
Q 009782 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--HSKDHEALIYFEQMERDGVLP--DHLTFVSLLSACAHLGSVKVGE 410 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~ 410 (526)
...+..|+ =...+......++.. ....+....+..-.....+.| +...|.-+.+++...|.+.+|.
T Consensus 365 ~~~~~~~~----------~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 365 NALCEVGK----------ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred cccccCCC----------CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 00000000 000111111111111 122233444444555555444 3457888999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
.+|..+... ...-+...|-.+..+|...|..+.|.+.|.+.+...|+. ..-..|...+.+.|+.++|.+.++.+..-+
T Consensus 435 ~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 435 RLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999865 233357789999999999999999999998888888866 677778888899999999999998876333
Q ss_pred CC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 490 PD---------NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 490 p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+. +..........|...|+.++-..+..+|++.
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 11 2334566788899999999877777777654
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=5.1e-12 Score=122.91 Aligned_cols=339 Identities=18% Similarity=0.171 Sum_probs=192.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (526)
|+.++|.+++.+..+.. +-....|-+|...|-..|+.+++...+-.+.... +-|...|..+.....+.|.+++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555554432 2333445555555555555555544433333222 333345555555555555555555555
Q ss_pred hhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH----Hh---hhhHHHHHHHHHHHH-h
Q 009782 253 DRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NA---SLLRIGAQVHGWVLR-R 321 (526)
Q Consensus 253 ~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~---~~~~~a~~~~~~~~~-~ 321 (526)
.+..+.++ ..+-.-+..|-+.|+...|...|.++.......|...+-.++. .+ ++-+.|.+.++.... .
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 55544222 2222233455555555555555555555422111111111111 11 222444444444433 2
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC----CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL 397 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 397 (526)
+-..+...++.++..+.+...++.|......+.. +|..-|..--. ++ .+-..++. ...++.++... ..+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~--~~-~~~~~~~~--~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER--RR-EEPNALCE--VGKELSYDLRV-IRLM 384 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh--cc-cccccccc--CCCCCCccchh-HhHh
Confidence 2334555667788888888888887776654442 22111100000 00 00000000 01223344333 1222
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcC
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYGISP--RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHG 473 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 473 (526)
-++.+.+..+....+.....+. .+.| +...|.-+.++|.+.|++.+|+.++.......+.. ..|-.+...|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3344445555555555555554 5444 57788999999999999999999995555544433 68999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+++|.+.|++++...|++..+...|...|.+.|+.++|.+.+..+.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999998754
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=3.1e-10 Score=106.80 Aligned_cols=427 Identities=11% Similarity=0.075 Sum_probs=276.1
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC
Q 009782 76 IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155 (526)
Q Consensus 76 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 155 (526)
.+++++..++- +-++..+ ++.....+.+.|.-++....+.- +.+...| -++++..-++.|..+++...+.
T Consensus 366 ~RVlRKALe~i-P~sv~LW----KaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEHI-PRSVRLW----KAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHhC-CchHHHH----HHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555542 2233333 33334556666777777777652 3334433 3455556678888888877665
Q ss_pred CC-CcccHHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--
Q 009782 156 TA-FAFPWNSLISGYAELGEYEDAIALYFQ----MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD-- 228 (526)
Q Consensus 156 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-- 228 (526)
-| ++..|.+-...--.+|+.+...+++.+ +...|+..+..-|..=...|-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 33 336677766666677888877777654 44567777777777777778778888888888887777776432
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-
Q 009782 229 GFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN- 304 (526)
Q Consensus 229 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~- 304 (526)
..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..++...+|.+.... .|....+-.+...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHH
Confidence 35777777888888888888888876665 24456666666666677788888888877765 3333332222211
Q ss_pred h---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHH---HHHHHhcCCchHHHH
Q 009782 305 A---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSW---NSIIHAHSKDHEALI 376 (526)
Q Consensus 305 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~li~~~~~~~~a~~ 376 (526)
. |++..|..++..+.+.... +...|-+.+........++.|..+|.+... +....| ..+...++..++|.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 1 7777888888777776544 667777777778888888888888876653 333332 223333566677777
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC
Q 009782 377 YFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 377 ~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (526)
++++-.+ .-|+.. .|..+...+.+.++++.|.+.|..-.+ ..+-.+..|-.|.+.=-+.|.+..|..++.+..-.
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 7776666 345543 666666666677777777766665543 23334556666666666667777777777555555
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 456 EAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 456 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+|+ ...|...++.-.+.|+.+.|..++.++++--|.+...|..-+....+-++-......+++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 663 3667777777777777777777777777777777777777777766666655555555443
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=3.1e-12 Score=122.37 Aligned_cols=281 Identities=8% Similarity=-0.031 Sum_probs=199.6
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH--HHHHHHhccCChHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSL-ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAGLGLIRVGEK 215 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~ 215 (526)
.|+++.|++.+....+....+..+..+ .....+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 689999998888766554333333333 44447889999999999998763 56654443 33567788899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc-----------cHHHHHHHHHhCCChHHHHHHHH
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI-----------SYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999988876 556778888899999999999999988888764322 12222222222223333333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 364 (526)
.+-+. .+.++.....+...+...|+.++|.+++++..
T Consensus 254 ~lp~~---------------------------------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l---------- 290 (398)
T PRK10747 254 NQSRK---------------------------------TRHQVALQVAMAEHLIECDDHDTAQQIILDGL---------- 290 (398)
T ss_pred hCCHH---------------------------------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------
Confidence 32111 12355666778888888888888888776433
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 009782 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444 (526)
Q Consensus 365 i~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 444 (526)
+ ..|+.... ++.+....++.+++.+..+...+. .+-|...+..+...+.+.|++++
T Consensus 291 ------------------~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 291 ------------------K--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred ------------------h--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 2 23444222 333444568999999999998864 44467778899999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 445 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
|.+.|++.+...|+...+..+...+.+.|+.++|.+++++.+.+.
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999998888999999998899999999999999999999987753
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-11 Score=110.92 Aligned_cols=317 Identities=14% Similarity=0.132 Sum_probs=183.3
Q ss_pred HHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH--HHHHHHhccCChHH
Q 009782 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAGLGLIRV 212 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~ 212 (526)
.+.+.|....|++.|......-| ..|.+-+....-..+.+.+..+.. |.+.|...+. -+..++-.....++
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 34455666667776666665555 445444443333333332222211 1111211111 12234444445566
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (526)
+.+-.......|++.+...-+....+.-...|+++|+.+|+++.+.|+.-.
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------------------------- 296 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------------------------- 296 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-----------------------------
Confidence 666666666666555554444444444555666666666666655332100
Q ss_pred CcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCch
Q 009782 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372 (526)
Q Consensus 293 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 372 (526)
-|..+|+.++-.-++-.+..-+ ..-...-.+--+.|...+.+.|+-.++.++|...|+...+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~L-A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk----------------- 358 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYL-AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK----------------- 358 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHH-HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----------------
Confidence 1222333222211110000000 0000000122345556677777777777777777765443
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
+.|.. ..|+.+.+-|....+...|.+.++.+++ +.| |-..|-.|.++|.-.+.+.-|+-.|+
T Consensus 359 -------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 359 -------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred -------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 34443 3566666677778888888888888774 444 77788888888888888888888887
Q ss_pred hhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 451 EKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 451 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
++...+| |+..|.+|+..|.+.++.++|++.|.++....-.+..++..|+++|-+.++.++|.+.+.+.++
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7888777 5578888888888888888888888888877666667788888888888888888877776554
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.8e-14 Score=131.66 Aligned_cols=258 Identities=18% Similarity=0.157 Sum_probs=106.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc
Q 009782 61 QKAFPKTKLQALDSIIQDLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139 (526)
Q Consensus 61 ~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 139 (526)
.+...+.+.|++++|+++++...... ...++..+..+...+...++++.|.+.++.+.+.+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778899999999997665554 23355555566667778899999999999999876 3366677777777 688
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCChHHHHHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHL 218 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 218 (526)
+++++|.++++..-+..+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998876666666778889999999999999999999987543 34566678888888999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG---NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
+..+.. +.|....+.++..+...|+.+++.++++... ..|...+..+..+|...|+.++|+..|++.... .|+
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~- 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD- 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--ccc-
Confidence 999875 4467788899999999999998777776554 356778899999999999999999999998774 232
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 296 VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 296 ~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
|+.....+.+++...|+.++|..+.+++.
T Consensus 247 ------------------------------d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 ------------------------------DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -------------------------------HHHHHHHHHHHT----------------
T ss_pred ------------------------------ccccccccccccccccccccccccccccc
Confidence 44555677888888888888888877643
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=8.8e-12 Score=120.78 Aligned_cols=426 Identities=14% Similarity=0.065 Sum_probs=252.4
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC
Q 009782 77 QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156 (526)
Q Consensus 77 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 156 (526)
.++-.+...|+.|+..||..+|..||..|+.+.|- +|..|.-...+.+..+++.++.+....++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 45677888999999999999999999999999999 9999988888888899999999988888877665 3
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHH-HHH-------cCCCCCcchHHHHHH--------------HHhccCChHHHH
Q 009782 157 AFAFPWNSLISGYAELGEYEDAIALYFQ-MEE-------EGVEPDQFTFPRVLK--------------ACAGLGLIRVGE 214 (526)
Q Consensus 157 ~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~-------~~~~p~~~t~~~ll~--------------~~~~~g~~~~a~ 214 (526)
|.+.+|..|..+|.+.||... ++..++ |.. .|+.--..-+-..++ ...-.|-++.+.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 444889999999999999765 222222 222 222111111111111 111122222222
Q ss_pred HHHHHHHHhCCCCchhHHHH---HHHHHHh-cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 215 KVHLDAVRFGFGFDGFVLNA---LVDMYAK-CGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
+++.. .|....++. +++-+.. ...+++-....+...+ +++.+|.+++.+-...|+.+.|..++.+|.+.
T Consensus 160 kll~~------~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAK------VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhh------CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 22211 111111111 1222211 1234444444444444 78888888888888888888888888888888
Q ss_pred CCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhc-----------cC-----
Q 009782 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD-----------HM----- 353 (526)
Q Consensus 290 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~~----- 353 (526)
|+..+.+-|..++.+.++...+..+..-|...|+.|+..|+.-.+-.+..+|....+.+..+ .+
T Consensus 234 gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred CCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 88888888888887778888888888888888888888887766655555333221111000 00
Q ss_pred -----------------CC-------CChhHHHHHHHh-c-CCch--------------------------HHHHHHHHH
Q 009782 354 -----------------PQ-------KDVVSWNSIIHA-H-SKDH--------------------------EALIYFEQM 381 (526)
Q Consensus 354 -----------------~~-------~~~~~~~~li~~-~-~~~~--------------------------~a~~~~~~m 381 (526)
++ .....|...+.. + |+.+ .+..+|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 00 011122211111 1 1111 122233332
Q ss_pred HHC----------C-------------------CCCCHH----------------------------HHHHHHHHHhccC
Q 009782 382 ERD----------G-------------------VLPDHL----------------------------TFVSLLSACAHLG 404 (526)
Q Consensus 382 ~~~----------~-------------------~~p~~~----------------------------~~~~ll~~~~~~~ 404 (526)
... | ..||.. .-+.++-.|++.-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 210 0 011111 1122333333333
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHhcCChHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-----FEASPVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~ 479 (526)
+..+++..-+..... -+ ...|..|++.+....+.+.|..+. +.+. ...+..-+..+.....+.+....+.
T Consensus 474 n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~-~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFV-DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhch-hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 333333332222211 11 156777888888888888888877 4432 2334466777788888888888888
Q ss_pred HHHHHHHcc---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 480 TAAQKLFEL---EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 480 ~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.+++++.+. .|.-..++..+.......|+.+...++.+-+...|+
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 888888762 233345566777777888888888888887777665
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.3e-11 Score=118.80 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=76.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 009782 171 ELGEYEDAIALYFQMEEEGVEPDQFT-FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 249 (526)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.|.+.+.+..+....++....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 357777777777666553 344332 33334556667777777777777665432222223333466667777777777
Q ss_pred HHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 009782 250 TVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 250 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (526)
..++.+.+ | +...+..+...+...|++++|.+.+..+.+.+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 77777764 2 4456667777788888888888888888777543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1e-12 Score=123.71 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=183.4
Q ss_pred CHHHHHHHHhhcCC--CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcC-C-CCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 244 DIVKARTVFDRIGN--KDL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNG-F-DPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 244 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+..+|...|...+. .|. .....+..+|...+++++|.++|+.+.+.. . .-+...|++.|-.+.+.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---------- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---------- 403 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----------
Confidence 45677777777553 233 444567788888888999988888887642 1 12334454444322110
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CCchHHHHHHHHHHHCCCCC-CHHHHH
Q 009782 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLP-DHLTFV 394 (526)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~~~a~~~~~~m~~~~~~p-~~~~~~ 394 (526)
.-...| |..+.+. -...+.+|.++-.++ ++++.|++.|++.++ +.| ...+|+
T Consensus 404 ---------v~Ls~L------------aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayT 459 (638)
T KOG1126|consen 404 ---------VALSYL------------AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYT 459 (638)
T ss_pred ---------HHHHHH------------HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhh
Confidence 000011 1122222 234567888888774 667889999999988 677 557898
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhc
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLH 472 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 472 (526)
.+..-+.....+|.|...|+.+. ++.| +...|.-|+-.|.+.++++.|+-.|.+++.++|.. .....++..+.+.
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al---~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKAL---GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhh---cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 88888889999999999999987 4455 45566678889999999999999999999999965 7777788889999
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
|+.++|+++++++..++|.|+..-...+..+...+++++|.+.++++.+.
T Consensus 537 k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998753
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-11 Score=111.10 Aligned_cols=288 Identities=13% Similarity=0.098 Sum_probs=203.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHH-----HH
Q 009782 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI-----SS 300 (526)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-----~~ 300 (526)
..|...+-...-.+-+.|....|++.|......-+..|.+.+...--.-+.+.+..+. . |...|...+ ..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHHHHHHHHH
Confidence 4454444444445556677777777777766654555555444333333333222221 1 111111111 11
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC------CChhHHHHHHHhcCCchHH
Q 009782 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ------KDVVSWNSIIHAHSKDHEA 374 (526)
Q Consensus 301 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~a 374 (526)
+...+...+++.+-.......|.+.+...-+....+.-...++++|+.+|+++.+ .|..+|+.++-.-.+..+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 1122255666666667777777777777777777788888999999999999986 3556777766654333221
Q ss_pred HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 375 LIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 375 ~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
.-+-+.... .... +.|..++.+.|.-.++.++|..+|+.+.+ +.| ....|+.+.+-|...++...|++-|..+
T Consensus 316 s~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111111 1233 35667777888888999999999999985 455 5678889999999999999999999999
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 453 MEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 453 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+.| |-..|-.|+++|.-.+-..-|+-+|+++.+..|.|+..|..|+++|.+.++.++|.+.|++...-|
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999 559999999999999999999999999999999999999999999999999999999999876543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=7.3e-11 Score=104.88 Aligned_cols=291 Identities=14% Similarity=0.082 Sum_probs=188.3
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 165 LISGYAE--LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 165 li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
+..+..+ .|+|.+|+++..+-.+.+-.| ...|..-.++.-+.|+.+.+-+++.+..+..-.++...+-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444433 578888888888776665333 3345556666777888888888888887764456666677777778888
Q ss_pred CCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009782 243 GDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319 (526)
Q Consensus 243 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 319 (526)
|+++.|..-.+.+.+ .++.......++|.+.|++.....++..|.+.|.--+...-..
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------- 227 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------- 227 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-------------------
Confidence 888888877765543 4566777888889999999999999999988876554432100
Q ss_pred HhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChh---HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH
Q 009782 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVV---SWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTF 393 (526)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 393 (526)
...+|+.+++-....+..+.-...++..+. .++. +|..-+--|++.++|.++..+..+++..|+
T Consensus 228 ------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---- 297 (400)
T COG3071 228 ------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---- 297 (400)
T ss_pred ------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----
Confidence 122334444444444444444445555542 1111 122222225555666666666666666655
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 473 (526)
...+-.+.+-++...-.+..+...+.++. ++..+.+|...|.+.+.|.+|.+.|+.+++..|+..+|.-+..++.+.|
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 22223455666777666666666664333 3466677777788888888888888777777788888888888888888
Q ss_pred ChHHHHHHHHHHHc
Q 009782 474 NVCMGETAAQKLFE 487 (526)
Q Consensus 474 ~~~~a~~~~~~~~~ 487 (526)
+..+|.+..++.+.
T Consensus 376 ~~~~A~~~r~e~L~ 389 (400)
T COG3071 376 EPEEAEQVRREALL 389 (400)
T ss_pred ChHHHHHHHHHHHH
Confidence 88888777777764
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=6e-10 Score=100.99 Aligned_cols=419 Identities=11% Similarity=0.042 Sum_probs=269.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~ 172 (526)
+-.-.+-=...+++..|..+|+..+... ..+...|...+.+=.++..+..|..+|++....-|.+ ..|.-.+-.=-..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3333333344566777777887777655 5566677777777777777888888887766554432 3355555555556
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (526)
|++..|..+|++-.+ ..|+...|.+.++.-.+.+.++.|..+++...-. .|++..|-.....=.+.|....|..+|
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 778888888877765 4678888888888777777888888887776643 577777777777777778777777777
Q ss_pred hhcCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc-HHHHHHHH---HHhhhhHHHHHH--------
Q 009782 253 DRIGN------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD-PVAISSIL---ANASLLRIGAQV-------- 314 (526)
Q Consensus 253 ~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll---~~~~~~~~a~~~-------- 314 (526)
....+ .+...+.+....-.++..++.|.-+|+-.++.-.+-. ...|.... ..+|+.......
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 66553 1223444444444556667777777766665421111 12222222 222433222221
Q ss_pred HHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChh---HHHHHHHh-----------cCCchHHHHHH
Q 009782 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVV---SWNSIIHA-----------HSKDHEALIYF 378 (526)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~li~~-----------~~~~~~a~~~~ 378 (526)
++..++ .-+.|-.+|--.++.-...|+.+...++|+.... |... .|.--|-. ..+.+.+.+++
T Consensus 311 YE~~v~-~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVS-KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHH-hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111122 2234556666677777778888888888887653 2211 11111111 24556677777
Q ss_pred HHHHHCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 379 EQMERDGVLPDHLTFVS----LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+..++. ++....||.- ...--.++.++..|.+++..+. |.-|-..+|...|..=.+.+.++.+..+|.+-+.
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777762 3333345443 2333346778888888888887 8888888888888888888888888888877788
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 455 FEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 455 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..|.. .+|......-...|+.+.|..+|+-++..... ....|...+..-...|.++.|..+++++.++
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 88854 88888877778888888888888888764321 1334666677777888888888888888765
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=5.9e-09 Score=94.71 Aligned_cols=413 Identities=13% Similarity=0.099 Sum_probs=269.4
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
..++++..|..+++.......+ +...+-.-+..=.+...+..|..+++.....- +.-...|-..+.+=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 3566777888888888766533 56666667777778888888999998887753 222344555555556678889999
Q ss_pred HHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh-CC
Q 009782 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF-GF 225 (526)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~ 225 (526)
++|++-.+..|+..+|++.|..=.+-+.++.|..++++..- +.|+..+|.-..+.-.+.|+...+..+|....+. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99988888888888899999888888889999999988876 4588888887777777888888888888776653 21
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhhc----CC----------------------------------------C--
Q 009782 226 -GFDGFVLNALVDMYAKCGDIVKARTVFDRI----GN----------------------------------------K-- 258 (526)
Q Consensus 226 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~----------------------------------------~-- 258 (526)
..+...+.++...=.++..++.|.-+|+-. ++ .
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 112233444444334445555555444322 11 1
Q ss_pred -CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH-----HHHHHH--HHh------hhhHHHHHHHHHHHHhCCC
Q 009782 259 -DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV-----AISSIL--ANA------SLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 259 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll--~~~------~~~~~a~~~~~~~~~~~~~ 324 (526)
|-.+|-..++.--..|+.+...++|++.... ++|-.. -|.-+- -+| .+.+.+.+++...++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 3345666666666778888888888887664 344221 111111 111 677777888877777 334
Q ss_pred CchhHHhH----HHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCC-CHHHHH
Q 009782 325 WDLCIANS----LIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLP-DHLTFV 394 (526)
Q Consensus 325 ~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p-~~~~~~ 394 (526)
...+++.- ....-.++.++..|.+++-...- |...+|..-|.. ++.++....+++..++ ..| |..+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 34444443 33444567788888888765542 555555555544 6777778888888777 344 445777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH----
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY---- 470 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~---- 470 (526)
.....=...|+.+.|..+|.-+.....+.-....|...|+.=...|.+++|..+|.+.+...+...+|.++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7776667778888888888887765333333445566666666778888888888666666666666666654332
Q ss_pred -hcC-----------ChHHHHHHHHHHHc
Q 009782 471 -LHG-----------NVCMGETAAQKLFE 487 (526)
Q Consensus 471 -~~g-----------~~~~a~~~~~~~~~ 487 (526)
+.+ +...|..+|+++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233 45567777777654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=4.7e-11 Score=114.90 Aligned_cols=274 Identities=12% Similarity=-0.064 Sum_probs=136.1
Q ss_pred ccCChHHHHHHHHHHhhhccCCCh-hHHHHHHHHHHhcCChhHHHHHHhccccCCCCcc--cHHHHHHHHHhcCChHHHH
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNK-GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF--PWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 179 (526)
..|+++.|.+.+....+.. |+. ..+-....+....|+.+.|.+.+++..+..|+.. ..-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455666666555544432 222 2222333444555666666666655544333321 1222345555556666666
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH-------HHHHHHHHHhcCCHHHHHHHH
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV-------LNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~~~g~~~~A~~~~ 252 (526)
+.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.++.++... +..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666655543 22333455555555666666666666666655543222211 111111111122233444444
Q ss_pred hhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH--HHHH--HHHh--hhhHHHHHHHHHHHHhCC
Q 009782 253 DRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA--ISSI--LANA--SLLRIGAQVHGWVLRRGV 323 (526)
Q Consensus 253 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l--l~~~--~~~~~a~~~~~~~~~~~~ 323 (526)
+..++ .+...+..+...+...|+.++|.+.+++..+.. ||... +..+ +..+ ++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 44443 255566666666666666666666666666542 33221 0111 1111 44455555555554432
Q ss_pred CCch--hHHhHHHHHHHhcCChHHHHHHhc--cCC--CCChhHHHHHHHh---cCCchHHHHHHHHHH
Q 009782 324 EWDL--CIANSLIVVYSKDGKLDQACWLFD--HMP--QKDVVSWNSIIHA---HSKDHEALIYFEQME 382 (526)
Q Consensus 324 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~--~~~~~~~~~li~~---~~~~~~a~~~~~~m~ 382 (526)
+-|+ ....++...+.+.|++++|.+.|+ ... .|+...+..+... .|+.++|.+++++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233 455677777777888888888777 332 3655554443333 577777777777643
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=8.4e-11 Score=101.33 Aligned_cols=284 Identities=15% Similarity=0.127 Sum_probs=192.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc--hhHHHHHHHHHHhcCCHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFD--GFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A 248 (526)
+++.++|.++|-+|.+.. +-+..+..+|.+.|.+.|..|.|+++++.+.+..- +.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888888888888742 22334556677888888889999988888876431 111 23445677788899999999
Q ss_pred HHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC
Q 009782 249 RTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 249 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 325 (526)
+++|..+.+.+. .....|+..|-...+|++|+++-+++.+.+-.+...-..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-------------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-------------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH--------------------------
Confidence 999988887433 456668889999999999999998888765444433321
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCh--hHHHHHHH----hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV--VSWNSIIH----AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
..|.-+...+....+++.|..++.+..+.|. +--++++. ..|++++|.+.++...+.+..--..+...|..+
T Consensus 181 --qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 --QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2234455555555666666666665554222 21122211 146666677777777776555555678889999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCChH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL---HGNVC 476 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~ 476 (526)
|.+.|+.++....+..+.+. .++...-..+.+.-....-.+.|...+.+.+..+|+...+..++..-.. .|...
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchh
Confidence 99999999999999998864 4444444555555556666777877777888889999888888876543 33455
Q ss_pred HHHHHHHHHHc
Q 009782 477 MGETAAQKLFE 487 (526)
Q Consensus 477 ~a~~~~~~~~~ 487 (526)
+....++++..
T Consensus 336 ~sL~~lr~mvg 346 (389)
T COG2956 336 ESLDLLRDMVG 346 (389)
T ss_pred hhHHHHHHHHH
Confidence 55566666653
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.2e-10 Score=103.15 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=209.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD-GFVLNALVDMY 239 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 239 (526)
+-...+-|.++|++++|++.|.+..+ ..|| ..-|.....+|...|+++++.+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 33445567778888888888888876 4577 566677777777888888877766666554 333 34555666667
Q ss_pred HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHH--------HHH-c--CCCCcHHHHHHHHHHh-h-
Q 009782 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG--------MIL-N--GFDPDPVAISSILANA-S- 306 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~-~--~~~p~~~~~~~ll~~~-~- 306 (526)
-..|++++|+.=. |-..+...+....-..-+.+++++ -.. . .+-|+.....+.++.+ .
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7777777765321 112222222222222222222222 111 1 2446665555555444 0
Q ss_pred -------hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC-------C---CChh----HHHHHH
Q 009782 307 -------LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-------Q---KDVV----SWNSII 365 (526)
Q Consensus 307 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~---~~~~----~~~~li 365 (526)
..+++........+.-..... ..+..|...+.+-. . -|.. .-..++
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~-------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLE-------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCc-------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 111111111111110000000 01222222221110 0 0110 112222
Q ss_pred Hh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhc
Q 009782 366 HA-----HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRA 439 (526)
Q Consensus 366 ~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 439 (526)
.+ .|+.-.|..-|+..+.....++.. |.-+...|....+.++..+.|.++.+ +.| |+.+|..-.+.+.-.
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHH
Confidence 33 577788999999998854444332 76777779999999999999999975 445 677777777788888
Q ss_pred CChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 440 GLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 440 g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+++++|..-|.+.+.+.|+. ..|..+..+..+.++++++...|++..+..|.-+..|+..+.++...+++++|.+.|+.
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999999999999999965 77888888888999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 009782 519 LVD 521 (526)
Q Consensus 519 m~~ 521 (526)
..+
T Consensus 488 ai~ 490 (606)
T KOG0547|consen 488 AIE 490 (606)
T ss_pred HHh
Confidence 765
No 52
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.3e-08 Score=95.16 Aligned_cols=433 Identities=13% Similarity=0.095 Sum_probs=259.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHH--hcC
Q 009782 63 AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA--TFG 140 (526)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g 140 (526)
+..+.+.+++++|++...++...+ +-+...+..-+-++.+.+.+++|+++.+.-... ..+...+ +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 344567899999999999999887 336777777788889999999999655432211 1111111 345554 688
Q ss_pred ChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH-hccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC-AGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~ 219 (526)
+.|+|+..++.....++ .....-...+-+.|++++|+++|+.+.+.+. + .+..-+++- ...+-.-.+ +.
T Consensus 94 k~Dealk~~~~~~~~~~--~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-d---d~d~~~r~nl~a~~a~l~~----~~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDD--KLLELRAQVLYRLERYDEALDIYQHLAKNNS-D---DQDEERRANLLAVAAALQV----QL 163 (652)
T ss_pred cHHHHHHHHhcccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHHHHhhhH----HH
Confidence 99999999995554444 3455566778899999999999999987643 2 222222211 111110111 12
Q ss_pred HHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHhhcC--------CCCc----------ccHHHHHHHHHhCCChHH
Q 009782 220 AVRFGFGFDGFVLNAL---VDMYAKCGDIVKARTVFDRIG--------NKDL----------ISYNSMLTGYIHHGLLVE 278 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~g~~~~ 278 (526)
+......| ..+|..+ .-.++..|++.+|+++++... ..|. ..--.|.-.+-..|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33333333 2233333 345667899999999998772 2211 122335557788999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHH---HHHh---hhhH--HHHHHHH-----------HHHHhCCCCchhHHhHHHHHHHh
Q 009782 279 AFDIFRGMILNGFDPDPVAISSI---LANA---SLLR--IGAQVHG-----------WVLRRGVEWDLCIANSLIVVYSK 339 (526)
Q Consensus 279 a~~~~~~m~~~~~~p~~~~~~~l---l~~~---~~~~--~a~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~ 339 (526)
|..++...+... .+|....... |-+. .++- .....++ .+....-.-....-+.++..|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999998875 2333222221 1111 1100 0111111 1111111111111223344443
Q ss_pred cCChHHHHHHhccCCCC-ChhHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009782 340 DGKLDQACWLFDHMPQK-DVVSWNSIIHAH-----SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
+.-+.+.++....... ....+.+++... ..+.++.+++...-+....-...+....+......|+++.|.+++
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4556677777666642 233444444442 234567777777665432223446666677788899999999999
Q ss_pred H--------HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCH-HHHHHHHHHHHhcCChHH
Q 009782 414 S--------VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASP-VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 414 ~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~ 477 (526)
. .+.+- +..|. +...+...+.+.++-+.|.+++.+++ ...+.. .++.-+...-.+.|+.++
T Consensus 400 ~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9 54443 44444 44566677777777666666664444 223322 344444445567899999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
|...++++++.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999885 45666555443
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.1e-10 Score=103.27 Aligned_cols=256 Identities=13% Similarity=0.029 Sum_probs=180.1
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
+.........-+...+++.+..++.+...+. +..++...+ -|..+ |+...-..+-..+++. .+..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~--~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPL--HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHH--HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 3444555566677788888888888887765 333333222 22222 4433333333344433 345677888888
Q ss_pred HHHHhcCChHHHHHHhccCCCCCh------hHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 335 VVYSKDGKLDQACWLFDHMPQKDV------VSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
-.|.-.|+.++|.+.|.+...-|. ..|..-...-+..++|+..+...-+. ++-...-+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 888888999999999987664222 23333333456778888888776552 11111223334445777899999
Q ss_pred HHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 009782 409 GERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEA-SPVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~ 479 (526)
|.++|.++. ++.| |+..++-+.-.....+.+.+|..+|...+ ...+ -..+++.|+.+|.+.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999987 5666 67777777777777889999999985555 1122 3367899999999999999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+++++.+.|.+..++..++-+|...|+++.|.+.|.+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.2e-10 Score=99.53 Aligned_cols=278 Identities=13% Similarity=-0.002 Sum_probs=160.5
Q ss_pred cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC--CCCcccHHHHHHHHHhcCChHHHHHH
Q 009782 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR--TAFAFPWNSLISGYAELGEYEDAIAL 181 (526)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 181 (526)
.|++.+|+++...-.+.+-.| ...|..-..+-...|+.+.+-.++.+..+. +++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666666655554222 223333344445566666666666666555 33334455555666666666666666
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-------FVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 182 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
+.++.+.+ +-.........++|.+.|++.....++..+.+.|+-.|. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666543 223345555666666666666666666666666643332 3456666666555666666666666
Q ss_pred cCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--hhhHHHHHHHHHHHH-hCCCCchh
Q 009782 255 IGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA--SLLRIGAQVHGWVLR-RGVEWDLC 328 (526)
Q Consensus 255 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~a~~~~~~~~~-~~~~~~~~ 328 (526)
.+. .++..-..++.-+.+.|+.++|.++..+..+.+..|+..+ ++... ++.+.-.+..+...+ .+.. +.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LIPRLRPGDPEPLIKAAEKWLKQHPED--PL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HHhhcCCCCchHHHHHHHHHHHhCCCC--hh
Confidence 653 4566666777788888888888888888887776666222 22222 333333333333322 2222 25
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
.+.+|...|.+.+.|.+|...|+... ...|+..+|+.+.+++.+.|+..+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl------------------------------~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAAL------------------------------KLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH------------------------------hcCCChhhHHHHHHHHHHcCChHH
Confidence 55666666666666666666665322 145666666666666666666666
Q ss_pred HHHHHHHHHH
Q 009782 409 GERLFSVMVE 418 (526)
Q Consensus 409 a~~~~~~~~~ 418 (526)
|.+..++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=5.4e-09 Score=100.67 Aligned_cols=421 Identities=11% Similarity=-0.001 Sum_probs=233.2
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--C
Q 009782 80 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--A 157 (526)
Q Consensus 80 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~ 157 (526)
.++....++.++..|..+.-++.+.|+++.+.+.|++....- ......|..+-..|..+|.-..|..+++.-.... |
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 333334455566677777767777777777777776665432 2334566666666666777777777776654443 2
Q ss_pred Cc-ccHHHHHHHHHh-cCChHHHHHHHHHHHHc--CC--CCCcchHHHHHHHHhcc----C-------ChHHHHHHHHHH
Q 009782 158 FA-FPWNSLISGYAE-LGEYEDAIALYFQMEEE--GV--EPDQFTFPRVLKACAGL----G-------LIRVGEKVHLDA 220 (526)
Q Consensus 158 ~~-~~~~~li~~~~~-~~~~~~a~~~~~~m~~~--~~--~p~~~t~~~ll~~~~~~----g-------~~~~a~~~~~~~ 220 (526)
+. ..+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|... . ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 21 222222223332 35555555555554441 11 11222333333333211 1 123455555555
Q ss_pred HHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCc
Q 009782 221 VRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPD 294 (526)
Q Consensus 221 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~ 294 (526)
.+.+. .|++..| +.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... |....
T Consensus 471 v~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 471 VQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 55442 2333222 3334555666666666655443 245566777777777777777777776655443 21000
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHH------hcCChHHHHHHhccCC---C---CChhHH
Q 009782 295 PVAISSIL-ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS------KDGKLDQACWLFDHMP---Q---KDVVSW 361 (526)
Q Consensus 295 ~~~~~~ll-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~---~---~~~~~~ 361 (526)
......=| ..+++.+++......+. ..+- ..|+-....+....+. . ..+.++
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L---------------~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKL---------------ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHH---------------HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 00000000 00133332222222211 1111 1111122222222221 0 111122
Q ss_pred HHHHHhc-CCchHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009782 362 NSIIHAH-SKDHEALIYFEQMERDGVLP--D------HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432 (526)
Q Consensus 362 ~~li~~~-~~~~~a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (526)
..+..-. .+...+..-.. |...-+.| + ...|......+.+.+..++|...+.++.. -.+.....|...
T Consensus 614 r~ls~l~a~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred HHHHHHHHhhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 2111110 11111000000 11111122 2 22455666778888999999988888864 233467777778
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGET--AAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
...+...|.+++|.+.|..++..+|+. ....++...+.+.|+...|.. ++..+++++|.++.+|..++.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 888999999999999999999999965 888999999999999888887 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009782 510 DDVERVERMLVD 521 (526)
Q Consensus 510 ~~A~~~~~~m~~ 521 (526)
++|.+.|+....
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=5e-11 Score=115.70 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 009782 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260 (526)
Q Consensus 181 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 260 (526)
++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+..+.++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4445555566666666666666666666666655 5555555555555555666666555555555444 4455
Q ss_pred ccHHHHHHHHHhCCChHH
Q 009782 261 ISYNSMLTGYIHHGLLVE 278 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~ 278 (526)
.+|+.|..+|..+||...
T Consensus 84 Dtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hHHHHHHHHHHhccchHH
Confidence 566666666666665443
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=1.9e-10 Score=109.70 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC----------CCcc-cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN----------KDLI-SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 300 (526)
...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++...
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i----------- 270 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI----------- 270 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------
Confidence 33355555555555555555543322 1121 2234666788888888888888887652
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHH
Q 009782 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380 (526)
Q Consensus 301 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~ 380 (526)
.+.......+.-..+++.|..+|.+.|++++|...++ .|+++++.
T Consensus 271 --------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e---------------------~Al~I~~~ 315 (508)
T KOG1840|consen 271 --------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE---------------------RALEIYEK 315 (508)
T ss_pred --------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH---------------------HHHHHHHH
Confidence 1111111111123456778889999999999999887 46666666
Q ss_pred HHHCCCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCc----hhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 381 MERDGVL-PDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYG--ISPR----VEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 381 m~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
. .|.. |... .++.+...|...+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++
T Consensus 316 ~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 316 L--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred h--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 2 2222 2332 466777778889999999999998876543 2222 467899999999999999999999766
Q ss_pred c--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CcchHHHHHHHHHhcCChHHHHHHH
Q 009782 453 M--------EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFEL----EPD---NEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 453 ~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
+ +..+. ...++.+...|.+.+++.+|.++|.+...+ .|+ ...+|..|+.+|.+.|++++|.++.
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6 22333 367888999999999999999999887663 344 4556889999999999999999998
Q ss_pred HHHH
Q 009782 517 RMLV 520 (526)
Q Consensus 517 ~~m~ 520 (526)
+.+.
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 8775
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1.4e-07 Score=89.21 Aligned_cols=277 Identities=11% Similarity=0.117 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc-------cHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----------
Q 009782 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLI-------SYNSMLTGYIHHGLLVEAFDIFRGMILNGFD----------- 292 (526)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------- 292 (526)
.|..+.+.|-..|+++.|..+|++..+-+-. +|......-.++.+++.|++++++...-.-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 4556677777888888888888877764333 4444445555667777777777665432111
Q ss_pred CcHHH---------HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC----CChh
Q 009782 293 PDPVA---------ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVV 359 (526)
Q Consensus 293 p~~~~---------~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 359 (526)
+.... |.-+..++|-++....+++.+.+..+.....+.| ....+-...-+++++++|++-.. |++.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 11111 2222344577788888888888776653333332 33344455567888888887654 5543
Q ss_pred -HHHHHHHh----cCC--chHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHhcCCCCc--hhH
Q 009782 360 -SWNSIIHA----HSK--DHEALIYFEQMERDGVLPDHLTFVSLLS--ACAHLGSVKVGERLFSVMVEKYGISPR--VEH 428 (526)
Q Consensus 360 -~~~~li~~----~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~ 428 (526)
.|+.-+.- ||. .+.|..+|++..+ |.+|...-+.-|+- .=.+.|....|+.+++++.. ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 45443332 433 3778888888888 56665543222222 22345788888888888765 56653 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY---ACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIKIY 503 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 503 (526)
|+..|.--...=-+.....+|++++..-|+...-...+. .-.+.|..+.|..+|...-++-++ +...|...-..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 676665444444445556667777776677654444433 346788888888888877775433 344466666666
Q ss_pred HhcCChHH
Q 009782 504 GNAGRLDD 511 (526)
Q Consensus 504 ~~~g~~~~ 511 (526)
.+-|+-+-
T Consensus 705 vrHGnedT 712 (835)
T KOG2047|consen 705 VRHGNEDT 712 (835)
T ss_pred HhcCCHHH
Confidence 67777433
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=7.6e-10 Score=95.57 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=201.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCc------ccHHHHHHHHHhCCChHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDL------ISYNSMLTGYIHHGLLVEA 279 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~a 279 (526)
.++.|+|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|+|+++-+.+.+ ||. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 478899999999998753 44556677888999999999999999987765 443 2334566778888999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChh
Q 009782 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359 (526)
Q Consensus 280 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 359 (526)
+.+|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+..
T Consensus 127 E~~f~~L~de~ef---------------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 127 EDIFNQLVDEGEF---------------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHhcchhh---------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 9999888775311 1122345677777777888887777766654444
Q ss_pred HHHHHHHh-----------cCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh
Q 009782 360 SWNSIIHA-----------HSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427 (526)
Q Consensus 360 ~~~~li~~-----------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 427 (526)
.|+..|.- -.+.+.|..++++..+. .|+.. .-..+.+.....|+++.|.+.++...+. +..--..
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~e 250 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSE 250 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHH
Confidence 44433332 24557789999988773 44443 4445667788999999999999999876 4333467
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH---
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG--- 504 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--- 504 (526)
+...|..+|...|+.++....+.+.+...+....-..+...-....-.+.|...+.+-+...|.--. +..++..-.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~da 329 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccc
Confidence 7788999999999999999999888888888877777777766677778888888888888888444 566665543
Q ss_pred hcCChHHHHHHHHHHHhC
Q 009782 505 NAGRLDDVERVERMLVDR 522 (526)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~ 522 (526)
..|+..+-..+++.|+..
T Consensus 330 eeg~~k~sL~~lr~mvge 347 (389)
T COG2956 330 EEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cccchhhhHHHHHHHHHH
Confidence 244567777777777654
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=3e-10 Score=101.10 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=156.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (526)
..+..+...+...|++++|.+.+++..+.. |+ +...+..+...|...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-------------------------------~~~~~~~la~~~~~~ 78 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-------------------------------DYLAYLALALYYQQL 78 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-------------------------------cHHHHHHHHHHHHHc
Confidence 456667777888888888888888776542 22 233445677788888
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 341 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
|++++|.+.+++.. +. .+.+...+..+...+...|++++|.+.++.+.+..
T Consensus 79 ~~~~~A~~~~~~al----------------------------~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 79 GELEKAEDSFRRAL----------------------------TL-NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred CCHHHHHHHHHHHH----------------------------hh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 88888888776543 21 12244567777888889999999999999998642
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
........+..+...+...|++++|...+.+.+...|+ ...+..+...+...|++++|...++++.+..|.++..+..+
T Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG 209 (234)
T ss_pred ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22334567778888999999999999999888887775 46788888999999999999999999999888888888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++...|+.++|..+++.+...
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999998887654
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=3.2e-08 Score=93.56 Aligned_cols=415 Identities=15% Similarity=0.082 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
.+++..-+.+.+...+. .+-...|....--.+...|+-++|.+..+...+.. ..+...|..+.-.+-...++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45666666666666663 22244555444445566788888888877776643 23334555555555556788888888
Q ss_pred HhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhC-C
Q 009782 149 FDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-F 225 (526)
Q Consensus 149 ~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~ 225 (526)
|......+++- ..|.-+.-.-++.|+++.......++.+. .|+ ...|.....++.-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88877766543 55666666667778888887777777764 233 3456677777777888888888888877654 2
Q ss_pred CCchhHHHHHH------HHHHhcCCHHHHHHHHhhcCCC--Cc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 226 GFDGFVLNALV------DMYAKCGDIVKARTVFDRIGNK--DL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 226 ~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
.|+...+.... ....+.|..++|.+.+..-... |- ..-..-...+.+.++.++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 45554443322 3345667777777777665432 22 22234455677788888888888888776 46666
Q ss_pred HHHHHHHHh-hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------CChhHHHHHHHhc
Q 009782 297 AISSILANA-SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------KDVVSWNSIIHAH 368 (526)
Q Consensus 297 ~~~~ll~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~ 368 (526)
-|...+..+ |.+... .+....+|....+ |--... .++.+-
T Consensus 254 ~Yy~~l~~~lgk~~d~-------------------------------~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl~~e 301 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDM-------------------------------LEALKALYAILSEKYPRHECPRRLPL-SVLNGE 301 (700)
T ss_pred HHHHHHHHHHHHHhhh-------------------------------HHHHHHHHHHHhhcCcccccchhccH-HHhCcc
Confidence 665444332 311111 1111122222211 000000 111111
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcC----------CCCchh--HHHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE---KYG----------ISPRVE--HYACMV 433 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~----------~~p~~~--~~~~l~ 433 (526)
.-.+...+++..+.+.|+.+-...+.+|-. .-...+-.+++.-.+.. ..| -+|... ++..++
T Consensus 302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 111345566677777777654433333322 11111111111111111 000 134443 345677
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
..|-+.|+++.|...+..+++..|+. ..|..=.+.+...|+.++|...++++.+++..|..+-..-+.-..++++.++|
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence 88889999999999998889888876 66767777888899999999999999999877777555777888889999999
Q ss_pred HHHHHHHHhCCC
Q 009782 513 ERVERMLVDRGL 524 (526)
Q Consensus 513 ~~~~~~m~~~g~ 524 (526)
.++.-...+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 988887776653
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1e-09 Score=104.68 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=176.6
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC-
Q 009782 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRF-----G-FGFDGF-VLNALVDMYAKCGDIVKARTVFDRIGN-------KD- 259 (526)
Q Consensus 195 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~- 259 (526)
.|...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46677888999999999999999887764 2 133333 334477788899999999999987753 22
Q ss_pred ---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCc-hhHHhHHHH
Q 009782 260 ---LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIV 335 (526)
Q Consensus 260 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 335 (526)
..+++.|..+|.+.|++++|...+++..+- ++..... ..+. ...++.+..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-------------------------~~~~~~~-~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-------------------------YEKLLGA-SHPEVAAQLSELAA 333 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------------------HHHhhcc-ChHHHHHHHHHHHH
Confidence 256788888999999999999998876542 1110000 0111 123456777
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFS 414 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 414 (526)
.++..+++++|..+++. +.+++...... ..|+ ..+++.|...|...|++++|.++++
T Consensus 334 ~~~~~~~~Eea~~l~q~---------------------al~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQK---------------------ALKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred HHHHhcchhHHHHHHHH---------------------HHHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 88889999999988873 33333311111 1112 3489999999999999999999999
Q ss_pred HHHHhc----C-CCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcC-------CCCCH-HHHHHHHHHHHhcCChHHHHH
Q 009782 415 VMVEKY----G-ISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKME-------FEASP-VVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 415 ~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~ 480 (526)
++.... | ..+ ....++.|...|.+.++..+|.++|.+..+ ..|+. .+|..|...|...|+++.|++
T Consensus 392 ~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 392 KAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 987652 1 122 245678889999999999999999966552 24554 889999999999999999999
Q ss_pred HHHHHHc
Q 009782 481 AAQKLFE 487 (526)
Q Consensus 481 ~~~~~~~ 487 (526)
+.+.+..
T Consensus 472 ~~~~~~~ 478 (508)
T KOG1840|consen 472 LEEKVLN 478 (508)
T ss_pred HHHHHHH
Confidence 9998874
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=6.3e-10 Score=111.36 Aligned_cols=213 Identities=13% Similarity=0.028 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH---------ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC
Q 009782 70 QALDSIIQDLESSVQNGITVQTETFASLLETCY---------QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140 (526)
Q Consensus 70 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 140 (526)
+.+++|+.++++..+..+. +...|..+..++. ..+++++|...++...+.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 4455666666666544322 2333333332222 1123555666666555543 344455555555555566
Q ss_pred ChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHL 218 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 218 (526)
++++|...|++....+|+. ..|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 6666666666655555432 34555555566666666666666665553 23321 22222333444555666666665
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
++.+...+.+...+..+..++...|+.++|...+.++...+. ...+.+...|+..| ++|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 555443122233344455555556666666666655443211 22333334444444 355554544443
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=1.7e-07 Score=88.62 Aligned_cols=438 Identities=11% Similarity=0.109 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
++.++.++.++.+| +..+-.-++.+...+++......|+..+. ..+.-...+|...+......|-++-+..
T Consensus 88 n~c~er~lv~mHkm--------pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 88 NNCFERCLVFMHKM--------PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred HHHHHHHHHHHhcC--------CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH
Confidence 35566777776666 33466666677788888888888887765 3344456788888888888899999999
Q ss_pred HHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCcchHHHHHHHHhccCCh---HHHHHHHH
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG------VEPDQFTFPRVLKACAGLGLI---RVGEKVHL 218 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~ 218 (526)
++++...-.| ..-+-.|..+++.+++++|.+.+....... .+.+-..|..+....++.-+. -.+..+++
T Consensus 160 vyrRYLk~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 160 VYRRYLKVAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHHHhcCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 9999888877 567788888999999999999888775431 233444555555555443322 22333444
Q ss_pred HHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhC----------------C----
Q 009782 219 DAVRFGFGFD--GFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHH----------------G---- 274 (526)
Q Consensus 219 ~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----------------g---- 274 (526)
.+... -+| ...|.+|.+.|++.|.+++|.++|++..+ ..+.-|+.+-++|++- |
T Consensus 238 ~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 238 GGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred hhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 43332 233 35789999999999999999999987664 2333344444444331 1
Q ss_pred --ChHHHHHHHHHHHHcC-C----------CCcHHHHHHHHHHh-hhhHHHHHHHHHHHHhC-----CCCchhHHhHHHH
Q 009782 275 --LLVEAFDIFRGMILNG-F----------DPDPVAISSILANA-SLLRIGAQVHGWVLRRG-----VEWDLCIANSLIV 335 (526)
Q Consensus 275 --~~~~a~~~~~~m~~~~-~----------~p~~~~~~~ll~~~-~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 335 (526)
+++-.+.-|+.+...+ + ..+..++..-...+ |+..+....+.++++.- +..-...|..+.+
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 1222233333333321 0 00111111111122 45556666666665531 1123456788999
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHH---HHHH-------hcCCchHHHHHHHHHHHCCC----------CC-------
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWN---SIIH-------AHSKDHEALIYFEQMERDGV----------LP------- 388 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~-------~~~~~~~a~~~~~~m~~~~~----------~p------- 388 (526)
.|-+.|+++.|..+|++..+-+-.+-+ .+-. -+.+++.|+++++.....-- .|
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 999999999999999998873222211 1111 14555667777766543111 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGAL 465 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l 465 (526)
+...|...++.-...|-++....+++.+.+..-..|- .-......+-...-++++.++|++.+..-+-+ ..|+..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 2234566666666778899999999999886222333 22233344556677899999998888765433 667776
Q ss_pred HHHHHh---cCChHHHHHHHHHHHccCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 466 LYACYL---HGNVCMGETAAQKLFELEPDNEH--NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 466 ~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+.-+.+ ..+.+.|..+|+++++.-|+... .|-.....--+-|.-..|..++++..
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 665543 33689999999999997775322 23333333345688888888888864
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9e-08 Score=85.75 Aligned_cols=260 Identities=10% Similarity=0.031 Sum_probs=128.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN---SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
++.|+.....+.+.+...|+.++|+..|+....-|+.+.. ...-.+.+.|+.+....+...+...
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------------ 295 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK------------ 295 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh------------
Confidence 3445555556666666666666666666555443332221 1122334455555555544444332
Q ss_pred HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhH------HHHHHHhcCCchHHH
Q 009782 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS------WNSIIHAHSKDHEAL 375 (526)
Q Consensus 302 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~~~a~ 375 (526)
.- -....|-.-.......++++.|+.+-++..+.+... -..++...++.++|.
T Consensus 296 --------------------~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 296 --------------------VK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred --------------------hh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 10 011111122223334445555555555444322111 112233345555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHH-HHHH-hcCChHHHHHHHHhh
Q 009782 376 IYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV-NLYG-RAGLIDEAYSMIVEK 452 (526)
Q Consensus 376 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~ 452 (526)
-.|+.... +.| +...|.-|+.+|...|...+|.-.-+.... -++.+..+...+. ..+. .-.--++|..++++.
T Consensus 355 IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 355 IAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 55555444 343 334666666666666666666655555443 2333444443332 2221 112235666666666
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 453 MEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 453 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++|+- ...+.+...|...|..++++.++++.+...|++ .....|++.+...+.+++|.+.|......
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6666654 445555555666666666666666666666653 33666666666666666666666555443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=3.1e-08 Score=95.97 Aligned_cols=280 Identities=16% Similarity=0.092 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc-----CC
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-----GL 141 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~ 141 (526)
...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.|..-|..+..+.+-. .+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 3558888888888775433 34345566677778888888899999888888876 55555566666665322 24
Q ss_pred hhHHHHHHhccccCCCCcccHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHH
Q 009782 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220 (526)
Q Consensus 142 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 220 (526)
.+...++++++....|...+...+.-.+.....+. .+...+..+...|+++ +|+.|-..|......+-..+++...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 66777888877666654333333322233223333 3445556677777643 4555666666555555555555554
Q ss_pred HHh----C----------CCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cccHHHHHHHHHhCCChHHHHH
Q 009782 221 VRF----G----------FGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGNKD---LISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 221 ~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~ 281 (526)
... | -+|+. .++.-+...|-..|++++|++.+++..+.+ +..|..-.+.+-+.|++++|.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 432 1 12333 344555667777888888888887776532 3456667777778888888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHh----hhhHHHHHHHHHHHHhCCCCchhHH--------hHHHHHHHhcCChHHHHHH
Q 009782 282 IFRGMILNGFDPDPVAISSILANA----SLLRIGAQVHGWVLRRGVEWDLCIA--------NSLIVVYSKDGKLDQACWL 349 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~ 349 (526)
.++..... .+.+.-.|+-...+ |+++.|..++....+.+..|-.... .....+|.+.|++..|+..
T Consensus 250 ~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 250 AMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 87776653 33333333333222 6666666666666555543222111 2345566666766666665
Q ss_pred hccC
Q 009782 350 FDHM 353 (526)
Q Consensus 350 ~~~~ 353 (526)
|..+
T Consensus 328 ~~~v 331 (517)
T PF12569_consen 328 FHAV 331 (517)
T ss_pred HHHH
Confidence 5543
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=5e-12 Score=80.94 Aligned_cols=48 Identities=31% Similarity=0.740 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 009782 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205 (526)
Q Consensus 158 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 205 (526)
+..+||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 345555555555555555555555555555555555555555555554
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=8.2e-12 Score=79.93 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 009782 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241 (526)
Q Consensus 192 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 241 (526)
||..+|+++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.2e-07 Score=88.78 Aligned_cols=408 Identities=12% Similarity=0.068 Sum_probs=238.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHH--HHHHH--Hh
Q 009782 96 SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS--LISGY--AE 171 (526)
Q Consensus 96 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--li~~~--~~ 171 (526)
+=+..+...+++++|.+....++..+ +.+...+..=+-+.+..+++++|+.+.+.-..... ++. +=.+| .+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~----~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV----INSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh----cchhhHHHHHHHHH
Confidence 33455667889999999999999877 66777777778888999999999977665443221 222 23344 46
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 249 (526)
.+..++|+..++ |..++.. +...-...+-+.|++++|..+|+.+.+++.+. |...-..++ ..+..-.+.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~----a~~a~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL----AVAAALQVQ 162 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH----HHHHhhhHH
Confidence 899999999988 3334433 66666677889999999999999998876432 111111121 112222222
Q ss_pred HHHhhcCCCCcccH---HHHHHHHHhCCChHHHHHHHHHHHHcC--------CC---------CcHHHHHHHHHHhhhhH
Q 009782 250 TVFDRIGNKDLISY---NSMLTGYIHHGLLVEAFDIFRGMILNG--------FD---------PDPVAISSILANASLLR 309 (526)
Q Consensus 250 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~---------p~~~~~~~ll~~~~~~~ 309 (526)
+.+........+| ......++..|++.+|++++....+.+ .. |-..-...++...|+.+
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 3444443223333 344567788999999999998883221 11 01111222333448899
Q ss_pred HHHHHHHHHHHhCCCCch---hHHhHHHHHHHhcCChH-HHHHHhccCCC---------------CChhHHHHHHHhc-C
Q 009782 310 IGAQVHGWVLRRGVEWDL---CIANSLIVVYSKDGKLD-QACWLFDHMPQ---------------KDVVSWNSIIHAH-S 369 (526)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~---------------~~~~~~~~li~~~-~ 369 (526)
++..++..+++....-.+ ...|.++..-....-++ .++..++.... .....-+.++..+ +
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999988888877643221 22222222211111111 12222221111 0111111222222 2
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHH
Q 009782 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAH--LGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 370 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 446 (526)
..+++.++....- +..|.. .+.+++..+.+ ...+.++.+++....+ +.+-+ ....-.+++.....|+++.|.
T Consensus 322 k~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 2233433333221 223333 34444444432 2257788888888766 34433 455567788889999999999
Q ss_pred HHHH--------hhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCC---CcchHHHHHHHHHhcCChHH
Q 009782 447 SMIV--------EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE----LEPD---NEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 447 ~~~~--------~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~ 511 (526)
+++. ......-.+.+...+...+.+.++.+.|..++..+.. ..+. -..++..++..-.+.|+-++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9994 2223344456667777778888887777777777654 2222 22334445555567899999
Q ss_pred HHHHHHHHHhCC
Q 009782 512 VERVERMLVDRG 523 (526)
Q Consensus 512 A~~~~~~m~~~g 523 (526)
|..+++++.+.+
T Consensus 477 a~s~leel~k~n 488 (652)
T KOG2376|consen 477 ASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHhC
Confidence 999999998743
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.9e-08 Score=86.09 Aligned_cols=293 Identities=9% Similarity=0.006 Sum_probs=157.8
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHH
Q 009782 172 LGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 249 (526)
.++...|...+-.+... -++-|......+.+.+...|+.+.|...|+.....+ |+. .......-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 44444444444333332 245566677788888888888888888888776543 221 11122222345667777766
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC
Q 009782 250 TVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF--DPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 250 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 324 (526)
.+...+-.. ....|-.-.......+++..|+.+-++.++.+- .|-...-..++...++.++|.-.|+...... +
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 665555432 233444445556667788888888777665421 1112222233444466666665565554432 2
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-c
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL-SACA-H 402 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~ 402 (526)
.+...|.-|+..|...|++.+|.-+-+...+ . +.-+..+...+. ..|. .
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~-----------~------------------~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIR-----------L------------------FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHH-----------H------------------hhcchhhhhhhcceeeccC
Confidence 3566777777777777777776654432211 1 111222222221 1111 1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
...-++|..+++... .+.|+ ....+.+...+...|+.++++.++++.+...||....+.|...+...+.+.+|...
T Consensus 417 p~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 122355555555544 23443 33344555556666666666666655666666666666666666666666666666
Q ss_pred HHHHHccCCCCcchHHHH
Q 009782 482 AQKLFELEPDNEHNFELL 499 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l 499 (526)
|..++.++|.+..+...|
T Consensus 494 y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHhcCccchHHHHHH
Confidence 666666666655544433
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=7.8e-10 Score=95.56 Aligned_cols=222 Identities=11% Similarity=0.058 Sum_probs=175.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (526)
+.+.++|.+.|.+.+|.+.|+.-+..- |-+.+|..|-++|.+..+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~----------------------------------~~~dTfllLskvY~ridQP 272 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF----------------------------------PHPDTFLLLSKVYQRIDQP 272 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC----------------------------------CchhHHHHHHHHHHHhccH
Confidence 678899999999999999998877652 3344455677788888888
Q ss_pred HHHHHHhccCCC--CChhHHHHHH----HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009782 344 DQACWLFDHMPQ--KDVVSWNSII----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417 (526)
Q Consensus 344 ~~A~~~~~~~~~--~~~~~~~~li----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 417 (526)
+.|+.++.+..+ |..+||-.=+ .+.++.++|.+++++..+.. ..+.....++...|.-.++++-|+.+++++.
T Consensus 273 ~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 273 ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 888888887765 6556654322 23677788888888887732 2244566667777888899999999999998
Q ss_pred HhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC--CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--EASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 418 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
+- |+. ++..|..+.-+|.-.+++|-++.-|.+++.. .|+. ..|..+.......||+..|.+.|+.++..+|++.
T Consensus 352 qm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 86 665 6778888888888899999999988776642 3443 7888888888899999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 494 HNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+++.|+..-.+.|+.++|..++......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999877654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=3.1e-09 Score=94.59 Aligned_cols=196 Identities=15% Similarity=0.045 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 169 (526)
...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+++.....|. ...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555666666777777777777666543 344556666666777777777777777766555432 24556666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 248 (526)
...|++++|.+.+++.......+ ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766532111 22344555566666777777777777666553 23345566666666667777777
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 249 RTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 249 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
...+++..+ .+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666665432 2334445555666666666666666655543
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=3.9e-09 Score=105.71 Aligned_cols=243 Identities=13% Similarity=0.018 Sum_probs=148.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCCh
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA---------KCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLL 276 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 276 (526)
++++|...+++..+.. +.+...|..+..+|. ..+++++|...+++..+- +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4567777777776653 223344544444433 223456666666665542 344555666666667777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC
Q 009782 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356 (526)
Q Consensus 277 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 356 (526)
++|...|++..+.+ |+ +...+..+..++...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~--P~-------------------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-- 399 (553)
T PRK12370 355 IVGSLLFKQANLLS--PI-------------------------------SADIKYYYGWNLFMAGQLEEALQTINECL-- 399 (553)
T ss_pred HHHHHHHHHHHHhC--CC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 77777776666542 22 23344556667777777777777776544
Q ss_pred ChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHH
Q 009782 357 DVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVN 434 (526)
Q Consensus 357 ~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 434 (526)
+ ..|+.. .+..++..+...|++++|...++++.+. .+| +...+..+..
T Consensus 400 --------------------------~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~ 449 (553)
T PRK12370 400 --------------------------K--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVM 449 (553)
T ss_pred --------------------------h--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHH
Confidence 2 334322 2233344456678889999998888764 234 4555677888
Q ss_pred HHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCCcchHHHHHHHHHhcCChH
Q 009782 435 LYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE---PDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 510 (526)
+|...|+.++|.+.+.+.....|+. ...+.+...|...| +.|...++++++.. |.++. .+..+|.-.|+-+
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~ 524 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAI 524 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhH
Confidence 8888999999999986666666665 44455555667666 47777777776633 43333 2555666667777
Q ss_pred HHHHHHHHHHhCC
Q 009782 511 DVERVERMLVDRG 523 (526)
Q Consensus 511 ~A~~~~~~m~~~g 523 (526)
.+..+ +++.+.|
T Consensus 525 ~~~~~-~~~~~~~ 536 (553)
T PRK12370 525 AEKMW-NKFKNED 536 (553)
T ss_pred HHHHH-HHhhccc
Confidence 66665 7776554
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.7e-08 Score=90.08 Aligned_cols=282 Identities=12% Similarity=0.042 Sum_probs=185.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
...-.-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+.+.- +....+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 44445556666777888888888777765 34555566666667777777766666666666552 45566777777777
Q ss_pred HhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc--CC-CCcHHHHHHHH-HHhhhhHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILN--GF-DPDPVAISSIL-ANASLLRIGA 312 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~ll-~~~~~~~~a~ 312 (526)
.-.|+..+|.+.|.+...-|. ..|-.....|+-.|..++|+..+...-+. |. .|. .|..+= ...++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHHHHHHHhccHHHHH
Confidence 777888888888877665443 56777778888888888888777666543 21 121 111111 1114555555
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~ 392 (526)
+.|....... +.|+.+.+-+.-.....+.+.+|..+|+... ...+....... --..+
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l---------------------~~ik~~~~e~~-~w~p~ 457 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL---------------------EVIKSVLNEKI-FWEPT 457 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH---------------------HHhhhcccccc-chhHH
Confidence 5555444332 2345555555555556666666666665322 11111111111 13457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 470 (526)
++.|..+|.+.+.+++|+..++.... -.+-+..++.++.-.|...|+++.|.+.|.+++.++|+..+-..++..+.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88899999999999999999999986 34558899999999999999999999999999999999877766666543
No 75
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.2e-07 Score=81.33 Aligned_cols=414 Identities=13% Similarity=0.070 Sum_probs=236.8
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHH-
Q 009782 86 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS- 164 (526)
Q Consensus 86 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 164 (526)
|+....-.+.+++..+.+..+++.|.+++....+.. +.+....+.|..+|-+..++..|-..++.+....|...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444456777777777788888888887776654 345666777777888888888888888888777664333332
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC--AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
-...+-+.+.+.+|+++...|... |+...-..-+.+. -..+++..+..+.++.-..| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 245566778888888888877642 2222222222222 24567777776666654322 333444444455677
Q ss_pred CCHHHHHHHHhhcCCC----CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHh--hhhHHHHHHH
Q 009782 243 GDIVKARTVFDRIGNK----DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANA--SLLRIGAQVH 315 (526)
Q Consensus 243 g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~--~~~~~a~~~~ 315 (526)
|+++.|.+-|+...+- ....||. .-+..+.|+++.|++...++.++|++..+.. ........ ..+.....+.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 8888888888776652 2244544 3345566788888888888887775422110 00000000 0000000000
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-----CChhHHH--HHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVVSWN--SIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~--~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
... -+..+|.-...+.+.|+++.|.+-+.+|+- .|++|.. ++..+-++..+..+-+.-+...+.-
T Consensus 237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPf- 308 (459)
T KOG4340|consen 237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPF- 308 (459)
T ss_pred HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCC-
Confidence 000 012334445567788999999999999984 4555554 3444467777777777777664332
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHH-hcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS-PRVEHYACMVNLYG-RAGLIDEAYSMIVEKMEFEASPVVWGALL 466 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 466 (526)
...||..++-.||+..-++.|..++.+-... ... .+...|+ |++++. ..-..++|.+-+ +.+........-...+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL-~~La~~l~~kLRklAi 385 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKL-DGLAGMLTEKLRKLAI 385 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3458888888999998888888887654322 111 1333343 334433 344666776655 3221111111111111
Q ss_pred HH--HHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 467 YA--CYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 467 ~~--~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.. -...++ ...|++-|++.+++.-+ ....-.+.|++..++..+.++|+.-.+
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11 111111 22344445555554422 356677889999999999999886543
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=8.3e-07 Score=78.13 Aligned_cols=272 Identities=11% Similarity=-0.014 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
...+++..|+.+++.-...+-.-...+-..+...+.+.|++++|...+..+.... .++...+..|.-.+.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3445666777766665543333222223333344556677777777777666543 444455555554445556677776
Q ss_pred HHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 009782 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226 (526)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 226 (526)
.+-....+.. ..-..|....-+.++-++-..+-+.+... ..--.++.+..-..-.+.+|.+++......+
T Consensus 112 ~~~~ka~k~p---L~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 112 SIAEKAPKTP---LCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHhhCCCCh---HHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6665553321 22333444444555555555444444321 1111223333333334566666666655432
Q ss_pred CchhHHHH-HHHHHHhcCCHHHHHHHHhhcCC--CC-cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHH-H
Q 009782 227 FDGFVLNA-LVDMYAKCGDIVKARTVFDRIGN--KD-LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-I 301 (526)
Q Consensus 227 ~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-l 301 (526)
|+-...|. +.-+|.+..-++-+.++++--.+ || ....|..+....+.-+-..|+.-.+++.+.+-. . ..+.. +
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~-~~f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E-YPFIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-chhHHHH
Confidence 22222222 23344555555555555543322 22 233333333333332223333333333332111 0 11111 1
Q ss_pred HHH----hhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 302 LAN----ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 302 l~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
++. +.+-+.|.+++--+.+.- +..--.++-.|.+.+++.+|..+.+++.-
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~P 313 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDP 313 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCC
Confidence 111 023333444333332211 11223455678888888888888887764
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=3.7e-08 Score=95.46 Aligned_cols=256 Identities=16% Similarity=0.155 Sum_probs=168.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh-hhhHHHH
Q 009782 237 DMYAKCGDIVKARTVFDRIGN--KDL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA-SLLRIGA 312 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~a~ 312 (526)
..+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++.+ |+...|-..+..+ |...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc---
Confidence 345667888888888766544 233 345566778888888888888888888863 6666554433322 1000
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhcCCc----hHHHHHHHHHHHCCC
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKD----HEALIYFEQMERDGV 386 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----~~a~~~~~~m~~~~~ 386 (526)
+ ......+...++++++.+ |.......+.-.+... ..+..++..+..+|+
T Consensus 87 ---------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 87 ---------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred ---------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0 000122333333333322 1111111111111111 346677777888887
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCCch--hHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY-------------GISPRV--EHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++ +|+.|-..|......+-..+++....... .-+|.. .++..+.+.|-..|++++|++++.+
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 64 34444444555555555556666554321 112333 3446678889999999999999988
Q ss_pred hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 452 KMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 452 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
++...|.. ..|..-...+-+.|++.+|.+.++.+.++++.|..+-+-.+..+.+.|+.++|.+++......+.
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999975 88888899999999999999999999999999999889999999999999999999988776653
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=3.2e-09 Score=91.87 Aligned_cols=231 Identities=12% Similarity=0.056 Sum_probs=179.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 009782 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304 (526)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 304 (526)
.|-..-+.+.++|.+.|.+.+|++.|+...+ +-+.||-.|-+.|.+..++..|+.++.+-.+. .|-.+||..
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---- 294 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---- 294 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----
Confidence 3445557789999999999999999987654 67789999999999999999999999987764 576666633
Q ss_pred hhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCC---hhHHHHHHHh--c-CCchHHHHHH
Q 009782 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD---VVSWNSIIHA--H-SKDHEALIYF 378 (526)
Q Consensus 305 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~--~-~~~~~a~~~~ 378 (526)
-+...+-..++.++|.++|+...+.+ +....++-.. | ++.+-|+.++
T Consensus 295 ---------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 295 ---------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ---------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 23345555566666666666655422 2222222222 2 3446688888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
+++.+.|+. +...|+.+.-+|.-.+++|-++..|+++... .-.|+ ...|..+.......|++..|.+.|.-.+..+
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 888888876 6778888888899999999999999998875 34454 5678888888999999999999996677777
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 457 ASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 457 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
|+. ..++.|...-.+.|++++|..++..+..+.|+-
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 765 899999999999999999999999999998873
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.14 E-value=1.5e-06 Score=82.55 Aligned_cols=428 Identities=16% Similarity=0.145 Sum_probs=264.9
Q ss_pred CCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 64 FPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
..+...|+-++|.+....-.+..+. +.+-|..+--......++++|.+-|......+ +.|..++.-+.-.-+..|+++
T Consensus 49 L~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred chhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 3455678888999888877766554 56667777666777789999999999999876 667777776666667778888
Q ss_pred HHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCcchHHHHHH------HHhccCChHHHHH
Q 009782 144 EAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLK------ACAGLGLIRVGEK 215 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~------~~~~~g~~~~a~~ 215 (526)
..........+..|.. ..|..+..++--.|+...|..++++..+.. -.|+...|..... .....|..+.|.+
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 8888887777766654 678999999999999999999999998764 2466666544332 2346788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHH-HHHHhCCChHHHH-HHHHHHHHc--
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSML-TGYIHHGLLVEAF-DIFRGMILN-- 289 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~-- 289 (526)
.+..-... +......-.+-...+.+.+++++|..++..+.. ||...|+... .++.+-.+.-+++ .+|....+.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 77655433 122222334556778899999999999999876 4445555444 4444344444444 566655443
Q ss_pred -CCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc
Q 009782 290 -GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368 (526)
Q Consensus 290 -~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 368 (526)
.-.|-.... .++..-.-.+....++....+.|+++ ++..+...|-.-...+ ++++ .+..|...+.+.
T Consensus 286 r~e~p~Rlpl-svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~----Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 286 RHECPRRLPL-SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEK----LVTSYQHSLSGT 353 (700)
T ss_pred ccccchhccH-HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHH----HHHHHHhhcccc
Confidence 111221111 12222344455666667777777654 3333333332222111 1111 112222222221
Q ss_pred CCc--hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChH
Q 009782 369 SKD--HEALIYFEQMERDGVLPDHL--TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLID 443 (526)
Q Consensus 369 ~~~--~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 443 (526)
+.+ .+.- .--.|+.. ++-.+...+-+.|+++.|..+++.+. +..|+ +..|..=.+.+...|.++
T Consensus 354 ~~f~~~D~~--------~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 354 GMFNFLDDG--------KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred cCCCccccc--------ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChH
Confidence 111 0000 00144443 45566777788888888888888887 44665 445555567778888888
Q ss_pred HHHHHHHhhcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHccCCC-------CcchHHHH--HHHHHhcCChHHHH
Q 009782 444 EAYSMIVEKMEFEASPVVWG-ALLYACYLHGNVCMGETAAQKLFELEPD-------NEHNFELL--IKIYGNAGRLDDVE 513 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l--~~~~~~~g~~~~A~ 513 (526)
+|..++.++-+.+......| -...-..+.++.++|.++.....+-+.+ -...|..+ +.+|.++|++-+|+
T Consensus 423 eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 423 EAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 88888866655544333333 5556667788888888877776553321 11223332 56788888887776
Q ss_pred HHHH
Q 009782 514 RVER 517 (526)
Q Consensus 514 ~~~~ 517 (526)
+=|.
T Consensus 503 Kkfh 506 (700)
T KOG1156|consen 503 KKFH 506 (700)
T ss_pred HHHh
Confidence 5443
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.4e-06 Score=85.06 Aligned_cols=416 Identities=12% Similarity=0.133 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh-----------ccCCChhHHHHHHHHHHhc
Q 009782 71 ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-----------LLRKNKGISSKLLRLYATF 139 (526)
Q Consensus 71 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~ 139 (526)
.++.+++.++.|...+++.|..+.-.+..-|...=-.+...++|+...+. ++.-|+.+.-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 35667777777777777777776666666666655666777777766541 3456777778889999999
Q ss_pred CChhHHHHHHhccccCC-----------------CC--------------------------------------ccc---
Q 009782 140 GLIDEAHQVFDQMSNRT-----------------AF--------------------------------------AFP--- 161 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~-----------------~~--------------------------------------~~~--- 161 (526)
|++.+.+++.++-.--+ |- +.+
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 99999888865431000 10 000
Q ss_pred -----------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-hHHHHH--
Q 009782 162 -----------------------WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEK-- 215 (526)
Q Consensus 162 -----------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~-- 215 (526)
-+-|+.-.-+.++.+--+..++.....|. .|..|||++.+.|...++ ++.-++
T Consensus 818 LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN 896 (1666)
T KOG0985|consen 818 LLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKEN 896 (1666)
T ss_pred hhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccC
Confidence 00011111222333334445555566664 478888888888775543 221111
Q ss_pred -HHHHH------H-----------HhC--------CCCchhHHHHHHHHHHhcCC---HHHH--------HHHHhhcCC-
Q 009782 216 -VHLDA------V-----------RFG--------FGFDGFVLNALVDMYAKCGD---IVKA--------RTVFDRIGN- 257 (526)
Q Consensus 216 -~~~~~------~-----------~~g--------~~~~~~~~~~li~~~~~~g~---~~~A--------~~~~~~~~~- 257 (526)
.++.. . ++| +...-..|....+.+.+..| |.+. ..+.+.+.+
T Consensus 897 ~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~t 976 (1666)
T KOG0985|consen 897 PYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQT 976 (1666)
T ss_pred CcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHh
Confidence 01100 0 001 00011112222233333332 1222 123333221
Q ss_pred -----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------------CC--Cc-HHHHHHHHHHh-------
Q 009782 258 -----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-----------------FD--PD-PVAISSILANA------- 305 (526)
Q Consensus 258 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------------~~--p~-~~~~~~ll~~~------- 305 (526)
.|+...+.-+.++...+-+.+-.++++++.-.+ ++ |+ ...|..-+..+
T Consensus 977 al~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~ 1056 (1666)
T KOG0985|consen 977 ALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAE 1056 (1666)
T ss_pred cCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHH
Confidence 344445555566666666666666666554221 11 11 11244444333
Q ss_pred -----hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHH
Q 009782 306 -----SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377 (526)
Q Consensus 306 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~ 377 (526)
+-.++|..+|+.. ..+....+.|+. .-+..+.|.++-++..+|. .|+.+-.+ -+...+|.+-
T Consensus 1057 iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHH
Confidence 3345555555443 223333333332 3466777777777666553 46666665 2444555554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 378 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
|-+ .-|+..|..+++.+.+.|.+++-..++..+.++ .-.|.+.+ .|+-+|++.++..+-.+++ ..|
T Consensus 1127 yik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi-----~gp 1192 (1666)
T KOG0985|consen 1127 YIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI-----AGP 1192 (1666)
T ss_pred HHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh-----cCC
Confidence 432 226678999999999999999999999988876 66776664 7899999999999988877 478
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+..-...++.-|...|.++.|.-+|.. ...|..|...+...|+|..|...-++.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888889999999999999999877763 566888888999999988887665554
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=5.9e-09 Score=86.07 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=117.7
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 009782 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVG 409 (526)
Q Consensus 331 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a 409 (526)
..|.-.|...|+...|..-+++..+ ..|+. .++..+...|.+.|..+.|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~------------------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A 88 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALE------------------------------HDPSYYLAHLVRAHYYQKLGENDLA 88 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH------------------------------hCcccHHHHHHHHHHHHHcCChhhH
Confidence 3466678888888888887776553 33443 3677777777888888888
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009782 410 ERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
.+.|+.+.. +.| +..+.|.....+|..|++++|...|.+++. .|. ..+|..++.+..+.|+.+.|...+++
T Consensus 89 ~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 89 DESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred HHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 888888774 344 566777777778888888888888866664 332 26777777777788888888888888
Q ss_pred HHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 485 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++++|+.+.+...+.......|++-.|..+++.....|
T Consensus 165 aL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 165 ALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 888888888888888888888888888888877776554
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1e-07 Score=87.45 Aligned_cols=224 Identities=13% Similarity=0.005 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHHHHhhCCC-CC--ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 68 KLQALDSIIQDLESSVQNGI-TV--QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.....+.++.-+.++..... .| ....|...-..+.+.|+.++|...|+...+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34677888888888876432 22 23457777778889999999999999999875 5678899999999999999999
Q ss_pred HHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 145 AHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 145 a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
|...|++..+.+|+. .+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...+......
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999998887753 67888888899999999999999999875 455443333333445678899999999776543
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHH--HHHHHhhcCC-------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVK--ARTVFDRIGN-------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 294 (526)
. .++...+ .+...+ .|+... +.+.+..-.+ ....+|..+...+.+.|++++|...|++..+.+ .||
T Consensus 195 ~-~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 195 L-DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred C-CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2 3333322 233333 455433 3333332222 123578899999999999999999999998764 335
Q ss_pred HHHHH
Q 009782 295 PVAIS 299 (526)
Q Consensus 295 ~~~~~ 299 (526)
...+.
T Consensus 270 ~~e~~ 274 (296)
T PRK11189 270 FVEHR 274 (296)
T ss_pred HHHHH
Confidence 44443
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=2.5e-06 Score=82.88 Aligned_cols=384 Identities=16% Similarity=0.090 Sum_probs=218.9
Q ss_pred HhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc
Q 009782 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195 (526)
Q Consensus 117 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 195 (526)
+....+..+..+|..+.-+..++|+++.+.+.|++....-. ....|+.+-..+.-.|.-..|..+++.-....-.|+..
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33345567889999999999999999999999998754422 22679999999999999999999998776543334444
Q ss_pred -hHHHHHHHHh-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHH
Q 009782 196 -TFPRVLKACA-GLGLIRVGEKVHLDAVRF--GF--GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269 (526)
Q Consensus 196 -t~~~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 269 (526)
.+-..-+.|. +.+..+++..+..++.+. |. ......|-.+.-+|...-. +.+..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s------- 454 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS------- 454 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH-------
Confidence 3433344443 556777777776666652 11 1122233333333321100 000000
Q ss_pred HHhCCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHh-hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH
Q 009782 270 YIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANA-SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 347 (526)
-+.....++++.+++..+. +..|+...|.++-.+. ++++.|.+...+..+.+-..+...|..+.-++.-.+++.+|+
T Consensus 455 -eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 455 -ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 0011123444445544443 2334444444444333 555555555555555555555556666666666666666666
Q ss_pred HHhccCCCCChhHHHHHH-----H-hcCCchHHHHHHHHHHH---------------------CCC-----CC--CHHHH
Q 009782 348 WLFDHMPQKDVVSWNSII-----H-AHSKDHEALIYFEQMER---------------------DGV-----LP--DHLTF 393 (526)
Q Consensus 348 ~~~~~~~~~~~~~~~~li-----~-~~~~~~~a~~~~~~m~~---------------------~~~-----~p--~~~~~ 393 (526)
.+.+...+.-...|+.+. . .+++.++++.....+.. .|. .| ...++
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 655543321111111100 0 03333333333322221 000 11 01122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHH
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPR--------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGA 464 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 464 (526)
..+..-....+....-... +.. ....|. ...|......+.+.++.++|...+.++-+..|-. ..|..
T Consensus 614 r~ls~l~a~~~~~~~se~~---Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK---LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred HHHHHHHHhhhhhcccccc---cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 2222111111100000000 111 122232 2345556677888899999988887888888854 77787
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH--HHHHHHhCCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER--VERMLVDRGL 524 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~ 524 (526)
.+..+...|..++|.+.|..++.++|++..+...++.++.+.|+-.-|.. ++..+.+.+.
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 78888999999999999999999999999999999999999998777777 8888887664
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.6e-07 Score=82.56 Aligned_cols=381 Identities=16% Similarity=0.122 Sum_probs=197.0
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+-+.|++++|+..+..+.+..-. +....-.+.-...-.|.+.+|..+-....+ ++--...+...-.+.++-++-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~-~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDA-PAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCC-CcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHH
Confidence 34789999999999998876543 444444444444457788888876654422 222222333444455665555
Q ss_pred HHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHH-HHhccCChHHHHHHHHHHHHhC
Q 009782 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK-ACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~g 224 (526)
..+-+.+.+... ---+|.+..-..-.+.+|++++.+....+ |+-...|.-+. +|.+..-++.+.++++...+.
T Consensus 141 ~~fh~~LqD~~E---dqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDTLE---DQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhhHH---HHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 555444433211 11233333333445677777777766542 34444444333 344556666666666655543
Q ss_pred CCCchhHHHHHHHHHHhc--CCH---------------------------------HHHHHHHhhcCCCCcccHHHHHHH
Q 009782 225 FGFDGFVLNALVDMYAKC--GDI---------------------------------VKARTVFDRIGNKDLISYNSMLTG 269 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~~~~~~~~~~~~li~~ 269 (526)
++.+....|.......+. |+. +.|++++-.+.+.=+..--.|+--
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 233334444333333222 222 222222211111111222334445
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--------hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 009782 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA--------SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (526)
|.+.++..+|..+.+++.- ..|-......+..+. ..+.-|.+.|..+-+.+...|..
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI------------- 359 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI------------- 359 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-------------
Confidence 6667777777766655422 233333332222211 12223333333332222222111
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 009782 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421 (526)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 421 (526)
|...+-.+-+-.+.++++++-+++.+..--..-|... -.+..+++..|++.+|+++|-.+... .
T Consensus 360 --------------pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~-~ 423 (557)
T KOG3785|consen 360 --------------PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGP-E 423 (557)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcCh-h
Confidence 1111222222223445555656665555323333333 34677888889999999998877532 3
Q ss_pred CCCchhHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 422 ISPRVEHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 422 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
++ |..+| ..|.++|.++++++.|++++ -.+....+..+ +..+...|.+.+.+--|-+.|..+-.++|.
T Consensus 424 ik-n~~~Y~s~LArCyi~nkkP~lAW~~~-lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 424 IK-NKILYKSMLARCYIRNKKPQLAWDMM-LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hh-hhHHHHHHHHHHHHhcCCchHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 33 44444 56778889999999999888 33432223333 344445688888888888888888777776
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.1e-07 Score=81.50 Aligned_cols=286 Identities=12% Similarity=0.013 Sum_probs=196.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHH-HHHHHHhc
Q 009782 61 QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK-LLRLYATF 139 (526)
Q Consensus 61 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~ 139 (526)
.++..+++..++++|++++..-.+..++ +....+.+-.+|.+..++..|-.-++++-.. .|...-|.. -...+-+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3444567889999999999988877654 7778888888899999999999999988765 344333321 23455677
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLI--SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
+.+..|+++...|.+. +....-..-+ ...-..+++..+..++++....| +..+.+.......+.|+.+.|.+-|
T Consensus 92 ~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 8899999999888765 2111111112 22335688888888888876432 4444444444455889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------CCc---------------ccHHH
Q 009782 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-----------------KDL---------------ISYNS 265 (526)
Q Consensus 218 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------~~~---------------~~~~~ 265 (526)
+...+.+---....||.-+ +..+.|+++.|++...++.+ +|+ ..+|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 9888755333455666444 45577899999988877643 122 12344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHHHHHH-HHHh-hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSI-LANA-SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l-l~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (526)
-...+.+.|+++.|.+.+.+|--+ ....|++|...+ +... +++.....-+..++.... ....|+..++-.||+..-
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 444567889999999988888543 345677776543 3333 667777777777776644 567788899999999999
Q ss_pred hHHHHHHhccCCC
Q 009782 343 LDQACWLFDHMPQ 355 (526)
Q Consensus 343 ~~~A~~~~~~~~~ 355 (526)
++-|-.++.+-..
T Consensus 326 f~lAADvLAEn~~ 338 (459)
T KOG4340|consen 326 FDLAADVLAENAH 338 (459)
T ss_pred HhHHHHHHhhCcc
Confidence 9999998876553
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=8.9e-08 Score=87.79 Aligned_cols=213 Identities=10% Similarity=-0.060 Sum_probs=119.8
Q ss_pred hCCChHHHHHHHHHHHHcC-CCCcHH--HHHH---HHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 272 HHGLLVEAFDIFRGMILNG-FDPDPV--AISS---ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
..+..+.++.-+.+++... ..|+.. .+.. +....|+.+.|...++...+... .+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888777642 233321 1111 12223778888888887777643 356778888888888888888
Q ss_pred HHHHhccCCC--CC-hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 346 ACWLFDHMPQ--KD-VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 346 A~~~~~~~~~--~~-~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
|...|+...+ |+ ...|..+... .|+.++|.+.++...+ ..|+..........+...++.++|...+++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 8888877754 32 2333332222 4777777777777766 344432212222223345667777777766543
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHH--HHHHHHhhcCCCC----C-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 420 YGISPRVEHYACMVNLYGRAGLIDE--AYSMIVEKMEFEA----S-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 420 ~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
...|+...+ .+.. ...|+... +.+.+.+.....| + ...|..+...+.+.|++++|+..|+++++.+|.+
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 233332222 2222 22344433 3333322222222 1 2467777777777777777777777777777643
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.1e-07 Score=85.91 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=94.7
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCHHH
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA----HLGSVKV 408 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~ 408 (526)
.+...|++++|++++.... +.......+.. .+|.+.|.+.++.|.+ +..|. +...+..++. ..+.+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~~--~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKGG--SLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTTT--CHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHccC--cccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHH
Confidence 3444555555555555431 12222222222 3455555555556554 33333 3333343332 3346889
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNV-CMGETAAQKLF 486 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 486 (526)
|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+++...|+ +.++..++......|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999876 45678888888888999999999999999888888884 47777788888888877 66778888888
Q ss_pred ccCCCCcc
Q 009782 487 ELEPDNEH 494 (526)
Q Consensus 487 ~~~p~~~~ 494 (526)
...|.++.
T Consensus 264 ~~~p~h~~ 271 (290)
T PF04733_consen 264 QSNPNHPL 271 (290)
T ss_dssp HHTTTSHH
T ss_pred HhCCCChH
Confidence 88888654
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.5e-06 Score=80.97 Aligned_cols=234 Identities=11% Similarity=0.038 Sum_probs=142.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh----hhhHHHHHHHHHHHHhCCCC------chhHHhH
Q 009782 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA----SLLRIGAQVHGWVLRRGVEW------DLCIANS 332 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 332 (526)
.-.+.++..+..+++.|.+-+....+.. ...+|...+.+. +....+...-....+.|-.. =...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456666777777888888777776643 455555544433 33333333222222222110 0111222
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHH
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 411 (526)
+..+|.+.++++.|...|++...+... .-++..+...++++.......- +.|... -...-...+.+.|++..|..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT--PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 445777788899999888875431100 1122223333444444444333 333332 12222555677889999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.+.+++++ .+-|...|....-+|.+.|.+..|++-....+..+|+. ..|..=..++....+++.|.+.|++.++.+|
T Consensus 380 ~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99988875 34478888888888899999998888887777777765 5565556666677788899999999999998
Q ss_pred CCcchHHHHHHHHHh
Q 009782 491 DNEHNFELLIKIYGN 505 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~ 505 (526)
.+......+.+++..
T Consensus 458 ~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVEA 472 (539)
T ss_pred hhHHHHHHHHHHHHH
Confidence 877766666665553
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=2.1e-06 Score=75.31 Aligned_cols=315 Identities=12% Similarity=0.104 Sum_probs=179.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCcchH-HHH
Q 009782 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI---SGYAELGEYEDAIALYFQMEEEGVEPDQFTF-PRV 200 (526)
Q Consensus 125 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~l 200 (526)
++.-..-+.+.+...|++..|+..|....+.+| ..|.++. ..|...|+...|+.=+....+ .+||-..- ..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHh
Confidence 344445566667777888888888888888877 4455543 467777888888888877776 46764322 112
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHH
Q 009782 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280 (526)
Q Consensus 201 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 280 (526)
...+.++|.++.|..-|+..++.. |+.. ....++.+.--.++-+.+ ...+..+...|+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAI 175 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHH
Confidence 234557777777777777777653 2211 111122211111111111 12233455567777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CC
Q 009782 281 DIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KD 357 (526)
Q Consensus 281 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 357 (526)
.....+++. . +.+...+..-..+|...|++..|+.=++...+ .+
T Consensus 176 ~~i~~llEi--~-------------------------------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 176 EMITHLLEI--Q-------------------------------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHHhc--C-------------------------------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 777766653 1 23555566667788888888888776665543 22
Q ss_pred hhH-H--HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH----HHHH---HHH------hccCCHHHHHHHHHHHHHhcC
Q 009782 358 VVS-W--NSIIHAHSKDHEALIYFEQMERDGVLPDHLTF----VSLL---SAC------AHLGSVKVGERLFSVMVEKYG 421 (526)
Q Consensus 358 ~~~-~--~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll---~~~------~~~~~~~~a~~~~~~~~~~~~ 421 (526)
..+ | +.|+-..|+.+.++...++-.+ +.||.... -.|- ..+ ...+++.++.+..+...+.
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-- 298 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-- 298 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 222 2 2233335666666666666665 66776422 1111 111 1223444444444444432
Q ss_pred CCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 422 ISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 422 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.|. ...+..+-.++...|++.+|++...+.+...|+ ..++..-..+|.-...++.|+.-|+.+.+.+++|..+
T Consensus 299 -ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 299 -EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred -CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 232 233444555566667777777777666677775 4666666666766677777777777777777776554
Q ss_pred HHH
Q 009782 496 FEL 498 (526)
Q Consensus 496 ~~~ 498 (526)
-..
T Consensus 378 reG 380 (504)
T KOG0624|consen 378 REG 380 (504)
T ss_pred HHH
Confidence 433
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=2.8e-07 Score=76.35 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=106.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 009782 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341 (526)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (526)
+...|.-.|...|+...|..-+++.++. .|+ +..++..+...|-+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs-------------------------------~~~a~~~~A~~Yq~~G 83 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPS-------------------------------YYLAHLVRAHYYQKLG 83 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc-------------------------------cHHHHHHHHHHHHHcC
Confidence 4556778899999999999999998875 333 3345566777888888
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
..+.|.+.|++..+ +.|+ ..+.|....-+|..|.+++|.+.|+.+....
T Consensus 84 e~~~A~e~YrkAls------------------------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 84 ENDLADESYRKALS------------------------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred ChhhHHHHHHHHHh------------------------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 88888888876553 1221 2233444444445555555555555554432
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
...--..+|..++-+..+.|+++.|.+.|.+.+...|+. .+...+.....+.|++..|..++++...-.+.+.......
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLG 213 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHH
Confidence 222234444455544455555555555555555444433 4444444455555555555555555544444444444444
Q ss_pred HHHHHhcCChHHHHHH
Q 009782 500 IKIYGNAGRLDDVERV 515 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~ 515 (526)
+++-.+.|+-+.|.+.
T Consensus 214 iriak~~gd~~~a~~Y 229 (250)
T COG3063 214 IRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccHHHHHHH
Confidence 4444455554444443
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=7.9e-08 Score=89.96 Aligned_cols=193 Identities=11% Similarity=0.040 Sum_probs=130.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---c---CCchHHHHHHHHHHHCCCC--------CCHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H---SKDHEALIYFEQMERDGVL--------PDHL 391 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~---~~~~~a~~~~~~m~~~~~~--------p~~~ 391 (526)
+...|.-|.......++-..|+..+++..+.|+.-..+|+.. | |.-.+|+..++.-+....+ ++..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 344455555555555555555555555554333333333322 2 2224455555554432110 0000
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 470 (526)
.-.. ..+.....+....++|-++....+..+|+..+..|.-.|--.|.+++|+..|..++..+|+. .+||.|+..++
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 12233334556666776766654655788888899999999999999999998899999955 89999999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...+.++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|-...
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999988889999999999999999998776554
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=6e-08 Score=78.14 Aligned_cols=126 Identities=13% Similarity=-0.035 Sum_probs=94.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 374 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
-..++++..+ +.|+. +..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|.+.+
T Consensus 12 ~~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 12 PEDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666655 45553 445667777888888888888888742 23367777888888888888888888887788
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
...|+ ...+..+..++...|+.++|+..+++++++.|+++..+.....+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77774 47778888888888888888888888888888888877766666543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.1e-05 Score=75.34 Aligned_cols=402 Identities=14% Similarity=0.101 Sum_probs=232.8
Q ss_pred HHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHH
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYED 177 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 177 (526)
.+....|+++.|...|...+... ++|...|.....+|+..|++++|++=-.+-.+..|+ +..|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 35567899999999999998876 558888999999999999999998877777666664 3679999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHH-HH------HHHHHHhC---CCCchhHHHHHHHHH--------
Q 009782 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE-KV------HLDAVRFG---FGFDGFVLNALVDMY-------- 239 (526)
Q Consensus 178 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~-~~------~~~~~~~g---~~~~~~~~~~li~~~-------- 239 (526)
|+.-|.+-++.. +-+...++-+..++. .+.+. +. +..+.... .......|..++..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999887742 233345566666551 11111 00 00000000 000001111222111
Q ss_pred --HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHH-hCCCh----HHHHHHHHHHHHc-CCCCcHHHHHHHHHHh---hhh
Q 009782 240 --AKCGDIVKARTVFDRIGNKDLISYNSMLTGYI-HHGLL----VEAFDIFRGMILN-GFDPDPVAISSILANA---SLL 308 (526)
Q Consensus 240 --~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~----~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~---~~~ 308 (526)
.....+..|.-.+...... .+...-.... ....+ ........++.+. ...--..-...+..+. .++
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred cccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111111222111111100 0000000000 00000 0000000000000 0000000111222222 455
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCh---hHHHHHHHhc----------CCchHHH
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV---VSWNSIIHAH----------SKDHEAL 375 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----------~~~~~a~ 375 (526)
..+.+-+....... .+..-++....+|...|.+..+....+...+... .-|+.+-.++ ++++.+.
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 55666666655554 4566677788889999998888877766544211 2233322222 3335566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 376 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
..|.+.......|+.. .+....+++....+... -+.|... -...=...+.+.|++..|+..|.+++.
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 6666655433333221 12222333333333222 3344321 122236677899999999999999999
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 455 FEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 455 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+|+. ..|..-.-+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.|++.++..
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99955 8899999999999999999999999999999999999999999999999999999999987654
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=1.8e-05 Score=85.47 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----HH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-----ACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----VV 461 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~ 461 (526)
.+..+.......|+.+.|.+.++.+............+ ...+..+...|+.+.|.+.+.+.....+.. ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 34445555666777777777776664321111110001 111233445677777777763333211111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELE------PDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..+..++...|+.++|...+++++... +....++..++.+|.+.|+.++|...+.+..+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345556677777777777777776531 11223455667777777777777777776654
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=8e-08 Score=81.87 Aligned_cols=153 Identities=11% Similarity=0.112 Sum_probs=71.0
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009782 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
+..|...|+++.+....+.+..+. ..|+ ...+.+++...++...+.. +.|...|..+...|...|++++|...+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~~~~----~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~ 96 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-HQFA----SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAY 96 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-cccc----CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456777888777544332221110 0000 0122233444444433321 223345555555555555555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHH-HhcCC--hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 414 SVMVEKYGISPRVEHYACMVNLY-GRAGL--IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
++..+. .+.+...+..+..++ ...|+ .++|.+++.+.+...|+. ..+..+...+...|++++|+..++++++..
T Consensus 97 ~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 97 RQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555432 122444444444432 34444 355555555555555532 444555555555555555555555555555
Q ss_pred CCCcc
Q 009782 490 PDNEH 494 (526)
Q Consensus 490 p~~~~ 494 (526)
|++..
T Consensus 175 ~~~~~ 179 (198)
T PRK10370 175 SPRVN 179 (198)
T ss_pred CCCcc
Confidence 54443
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=1.2e-07 Score=76.40 Aligned_cols=109 Identities=7% Similarity=-0.098 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
+.++++..+ +.|+ .+..+...+...|++++|...|.+.+...|+ ...|..+..++...|++++|...|++++++
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345666653 4555 3556788899999999999999888999995 488899999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+|+++.++..++.++...|++++|.+.+++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987654
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=2.5e-05 Score=74.36 Aligned_cols=301 Identities=10% Similarity=-0.079 Sum_probs=154.6
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT---FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA-- 234 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-- 234 (526)
..|..+...+...|+.+.+...+....+.. +++... .......+...|++++|.+.+++..+.. +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345555555555666666555555544321 112111 1111223445677777777777766653 333333331
Q ss_pred -HHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHH
Q 009782 235 -LVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI 310 (526)
Q Consensus 235 -li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 310 (526)
........|..+.+.+.+......+. .....+...+...|++++|.+.+++..+.. |+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~---------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD---------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------------
Confidence 11111223445555555544222222 223344556777788888888887777642 22
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 009782 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH 390 (526)
Q Consensus 311 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~ 390 (526)
+...+..+..+|...|++++|...+++..+... ..|+.
T Consensus 147 ---------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~---------------------------~~~~~ 184 (355)
T cd05804 147 ---------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD---------------------------CSSML 184 (355)
T ss_pred ---------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC---------------------------CCcch
Confidence 233445667778888888888887776542110 01222
Q ss_pred --HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-H--HHHHHHHhcCChHHHHHH--HHhhc-CCCCC---H
Q 009782 391 --LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-A--CMVNLYGRAGLIDEAYSM--IVEKM-EFEAS---P 459 (526)
Q Consensus 391 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~~-~~~p~---~ 459 (526)
..|..+...+...|++++|..+++++.......+..... . .++.-+...|....+.++ ..... ...|. .
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~ 264 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLA 264 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccch
Confidence 234556667777788888888887765321111111111 1 222333334433222222 10111 10011 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccC-C---C-----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELE-P---D-----NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
........++...|+.+.|...++.+.... . . ..........++...|++++|.+++.+....
T Consensus 265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111245556677888888888887775522 1 1 2333445566777899999999988877653
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=4e-07 Score=93.43 Aligned_cols=197 Identities=11% Similarity=0.141 Sum_probs=167.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--------CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--------KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~ 394 (526)
+...|-..|......++.++|.++++++.. .-...|.++++. ||.-+...++|++..+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 456788888899999999999999988764 122355555554 88778899999998873 32345789
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHh
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYL 471 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~ 471 (526)
.|...|.+.+..++|.++++.|.++++ -....|..++..+.+..+-+.|.+++.+++..-|.. ......+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999999766 677889999999999999999999999999888863 455666667789
Q ss_pred cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
.|+.+.+..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999988864
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=1.5e-05 Score=70.19 Aligned_cols=308 Identities=14% Similarity=0.058 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHH---HHH
Q 009782 92 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL---ISG 168 (526)
Q Consensus 92 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l---i~~ 168 (526)
.-.--+-..+...|.+..|+.-|....+.. +.+-.++-.....|...|+-..|+.-|.+..+..|+ .+.+- ...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD--F~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD--FMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc--HHHHHHHhchh
Confidence 333445555666677777777777666532 112222233345666777777777777777777663 22222 245
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCcch----------------HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQFT----------------FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t----------------~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
+.+.|.+++|..=|+...+.. |+..+ ....+..+...|+...|+.....+++.. +-|...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 677888888888888877653 32211 1122233445667777777776666653 4566667
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhH
Q 009782 233 NALVDMYAKCGDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 309 (526)
..-..+|...|+...|+.-++.. ...+..++..+-..+...|+.+.++...++-++. .||....-.... .+.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK---klk 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK---KLK 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH---HHH
Confidence 77777777777777776555433 3455566666666677777777777777666553 455433211111 111
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 009782 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389 (526)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~ 389 (526)
+....++. +....+.++|.++.+ -.+...+ ..|.
T Consensus 268 Kv~K~les----------------~e~~ie~~~~t~cle----------------------------~ge~vlk--~ep~ 301 (504)
T KOG0624|consen 268 KVVKSLES----------------AEQAIEEKHWTECLE----------------------------AGEKVLK--NEPE 301 (504)
T ss_pred HHHHHHHH----------------HHHHHhhhhHHHHHH----------------------------HHHHHHh--cCCc
Confidence 11111111 111223333333333 3333333 2333
Q ss_pred --HH---HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH
Q 009782 390 --HL---TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 390 --~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
.. .+..+-.++...+++.+|++...+.. .+.|+ +.++.--..+|.-...+++|+.-|+.+...+++.
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 22 34455666777889999999999988 46664 8888888899999999999999998888888765
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.2e-06 Score=84.39 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.+++.++.+.|+.-.+. .+.-..+|-.+.-+..+.+++..|.+.|.......|+. ..|+.+-.+|.+.|+..+|...
T Consensus 498 ~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 45555555555554432 11134455555555555555555555555555555544 5555555555555555555555
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
++++++-+-.+...|...+-+....|.+++|.+.+.++.+
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555544455555555555555555555555555543
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=4.8e-07 Score=91.29 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=118.5
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHH
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWG 463 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~ 463 (526)
...+...+..|.......|..++|+.+++...+ +.|+ ......+...+.+.+++++|+..+.+.+...|+. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 555688899999999999999999999999985 5674 6667788899999999999999998899999976 6677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999999999999998999999999999999999999999999998864
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00012 Score=73.50 Aligned_cols=373 Identities=10% Similarity=0.089 Sum_probs=217.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhh--hccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPT--NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 167 (526)
|+...+..++++...+-+.+-.++++++.- ..+..+....|.|+-...+. +.....+..+++..-+.+ .+..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-----~ia~ 1056 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-----DIAE 1056 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-----hHHH
Confidence 555566666666666666666666666542 11222333444444443333 344555566655544321 1233
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
....++-+++|..+|+..- .+......++. .-+.+|.|.+.-+.. -...+|+.+..+-.+.|.+.+
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHH
Confidence 4445566777777776643 23333344443 235566665554432 234567778888888888888
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCC
Q 009782 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 248 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~ 324 (526)
|.+-|-+. .|+..|..++....+.|.|++-.+++....+..-.|...+ .++-++ +++.+..++ -..
T Consensus 1123 AieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~f-------i~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEF-------IAG 1191 (1666)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHH-------hcC
Confidence 88777554 3555788888888888888888888777666665665443 233333 222222221 234
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
||......+.+-|...|.++.|.-+|..+. .|.-|-.. +|.+..|.+.-++ .-+..||..+-.+|.
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-----N~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVS-----NFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACV 1260 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHh
Confidence 566666667777777777777777776433 33333322 3444444443332 224568888888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGIS--PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a 478 (526)
..+.+..|. |. |+. ....-..-|+..|...|-+++.+.+++..+|..-.. ..|+.|.-.|++- +.++.
T Consensus 1261 d~~EFrlAQ-----iC---GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km 1331 (1666)
T KOG0985|consen 1261 DKEEFRLAQ-----IC---GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKM 1331 (1666)
T ss_pred chhhhhHHH-----hc---CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHH
Confidence 776655442 22 433 345566788899999999999999997778876543 6666666666654 34555
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
.+.++-.+..- ..--++++...+.-|.|..=++.+
T Consensus 1332 ~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1332 MEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544311 122356777777777777666554
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=6.8e-06 Score=79.34 Aligned_cols=215 Identities=14% Similarity=0.032 Sum_probs=117.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChH
Q 009782 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344 (526)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (526)
.+-.....|.+|+.+++.++..... ...|..+-..+ |+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 3444455555555555555443211 11122222222 4444444444321 22456788999999999
Q ss_pred HHHHHhccCCCCChhHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 345 QACWLFDHMPQKDVVSWNSIIHA-----HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 345 ~A~~~~~~~~~~~~~~~~~li~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
+|.++-++...|....-..+-.+ +|++.+|.++|-.+. .|+ ..|..|-+.|..+...++.++-.-.
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 99999888776654443333333 677777777664332 233 2355677778777777766543211
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 420 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
.-..|...+..-|-..|+...|.+-|.++- -|.+-+..|..++-+++|-++.+ .-...|..-....
T Consensus 880 ----~l~dt~~~f~~e~e~~g~lkaae~~flea~-------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~f 945 (1636)
T KOG3616|consen 880 ----HLHDTHKHFAKELEAEGDLKAAEEHFLEAG-------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAF 945 (1636)
T ss_pred ----hhhHHHHHHHHHHHhccChhHHHHHHHhhh-------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHH
Confidence 123455566777778888888887774433 24555566666666666544433 2333333333444
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 009782 500 IKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~ 518 (526)
+++-+-.| +.|.+++.+
T Consensus 946 lwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 946 LWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHhhCc--HHHHHHHHh
Confidence 44433333 456666554
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.7e-08 Score=57.74 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=7.8e-06 Score=78.94 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=95.5
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 218 (526)
..++.+|+.+++.+.+++....-|-.+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+++.|.++-.
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHH
Confidence 334444444444444443333334444555555555555555543321 13334445555555555554433
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHH
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 298 (526)
+. .|.+.....|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+..+++..+--...+.-+...+
T Consensus 816 e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f 888 (1636)
T KOG3616|consen 816 EC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHF 888 (1636)
T ss_pred Hh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHH
Confidence 32 22233333444444444455555555555555554442 245555666666665555543222222333344
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccC
Q 009782 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353 (526)
Q Consensus 299 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 353 (526)
..-+.+-|++..|..-|-+.. -|.+.+++|...+-|++|.++-+.-
T Consensus 889 ~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 889 AKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 444555577777766554432 2456677888888888888776543
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=6.8e-07 Score=79.50 Aligned_cols=132 Identities=14% Similarity=0.009 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhc--------CChHHHHHHHHhhcCCCCCHH-H
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYGRA--------GLIDEAYSMIVEKMEFEASPV-V 461 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~-~ 461 (526)
.+..+..++...|++++|...++.+.+.+.-.|.. ..+..+..++... |+.++|.+.+.+.+...|+.. .
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 45566667777777777777777777542211211 1344444555443 667777777766666666542 1
Q ss_pred H-----------------HHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 462 W-----------------GALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 462 ~-----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+ ..+...+.+.|++++|+..++++++..|++ +.++..++.+|.+.|++++|..+++.+..
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 134556788999999999999999987765 46799999999999999999999998876
Q ss_pred CC
Q 009782 522 RG 523 (526)
Q Consensus 522 ~g 523 (526)
+.
T Consensus 232 ~~ 233 (235)
T TIGR03302 232 NY 233 (235)
T ss_pred hC
Confidence 54
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=0.00013 Score=71.74 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred ChhhHHHHHH--HHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC-----------C
Q 009782 90 QTETFASLLE--TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR-----------T 156 (526)
Q Consensus 90 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~ 156 (526)
|..|-..+++ .|.-.|+.+.|.+-.+.+. +..+|..+.++|.+.+++|-|.-.+-.|... +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 3445677887776655554 3457888888888888888887777666432 1
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 009782 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236 (526)
Q Consensus 157 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 236 (526)
++ ..-.-..-.....|..++|+.+|.+-+. |..+=+.|-..|.+++|.++-+.--+..+ ..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1111122223456777777777777765 44455566677778777776543221111 12444445
Q ss_pred HHHHhcCCHHHHHHHHhhcCC
Q 009782 237 DMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~ 257 (526)
..+-..+|.+.|++.|++...
T Consensus 866 ~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC
Confidence 555566777777777776543
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00019 Score=67.42 Aligned_cols=147 Identities=10% Similarity=0.131 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 372 HEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 372 ~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
+.....++++... ...|+ .+|..+++.-.+...++.|..+|.++.+. +..+ ++..+.+++..|| .++.+-|.++|
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 4455566665542 23333 46777788778888888899999998887 6666 6777788887765 56778888888
Q ss_pred HhhcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHcc--CCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 450 VEKMEFEASPVVW-GALLYACYLHGNVCMGETAAQKLFEL--EPD-NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 450 ~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+-.+...+|...| ...+.-+...|+-..+..+|++++.. .|+ ...+|..++.--+.-|+...+.++-+++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6677666766444 66677778888888888899988875 222 345688888888888988888888777643
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=1.2e-06 Score=79.08 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=128.6
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHhccCC-CCCh--hHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 009782 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDV--VSWNSIIHA-----HSKDHEALIYFEQMERDGVLPDHLTFVS 395 (526)
Q Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~li~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 395 (526)
.|.......+...+...++-+.+..-+++.. ++.. ..+..++.+ .|+.++|+++++.- -+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3444444445544444455566665554433 3211 112223333 37778888887642 35667778
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCC-CCCHHHHHHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEF-EASPVVWGALLYACY 470 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 470 (526)
.+..+.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.+|..+|.+.... .+++.+++.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 88999999999999999999973 44443 34445554432 34799999999554443 357788899999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL-DDVERVERMLVDR 522 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 522 (526)
..|++++|.+.++++++.+|.++.+...++.+....|+. +.+.+++.++.+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 6677888887654
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=7.3e-07 Score=83.69 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=113.6
Q ss_pred HHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 375 LIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 375 ~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
.++|-++ ...+..+|......|.-.|.-.|++++|...|+.+.. +.| |...|+.|.-.++...+.++|++.|.++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3344443 3455457777777888888999999999999999984 566 7889999999999999999999999999
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----------CcchHHHHHHHHHhcCChHHHHHH
Q 009782 453 MEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD----------NEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 453 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
+.+.|.- .....|.-.|...|.+++|.+.|-.++.+.+. +..+|..|-.++...++.|-+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999986 77788999999999999999999999886543 124788888888888888855443
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=5.1e-05 Score=72.31 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=15.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVE 418 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~ 418 (526)
....++...|+.+.|...++.+..
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 455556667777777777776654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=4.6e-06 Score=70.90 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=121.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
.|+.++...+....... ..-|......++....+.|++..|...++++.. .-++|...|+.+.-+|.+.|+++.|..
T Consensus 79 ~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 79 RGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred cccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHH
Confidence 34555555555443321 222344556688888999999999999999986 567789999999999999999999999
Q ss_pred HHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 448 MIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 448 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
-|.+.+...|+ +..++.+...+.-.|+.+.|..++.......+.+...-..|..+....|++++|..+...
T Consensus 156 ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 156 AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999998885 488899999999999999999999999998888888899999999999999999887543
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=0.00032 Score=69.16 Aligned_cols=205 Identities=12% Similarity=0.119 Sum_probs=119.7
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh---------hccCCChhHHHHHHHHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT---------NLLRKNKGISSKLLRLY 136 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~ 136 (526)
+...|+.+.|.+.++... +...|..+...|.+.++++-|.--+..|.. ....++ .+-.......
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445678888887777664 456677788888887777776655555432 111121 2222233334
Q ss_pred HhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 216 (526)
...|-+++|+.++.+... |..|=..|-..|.+++|+++-+.=-.-. =..||..-..-+...++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 566788888888877643 3444455666777777777654422211 123555555555666677777666
Q ss_pred HHHHH----------HhC---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------------------
Q 009782 217 HLDAV----------RFG---------FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-------------------- 257 (526)
Q Consensus 217 ~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------- 257 (526)
|++.. ... -..|...|.-....+-..|+++.|+.+|.....
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 65321 111 012334444444455566777777777765542
Q ss_pred ----CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 258 ----KDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 258 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
.|......+.+.|-..|++.+|...|.+.+
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 244556667777777777777777776653
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=7.8e-05 Score=74.84 Aligned_cols=395 Identities=12% Similarity=-0.006 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQM 185 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 185 (526)
...|...|-...+.. +.-...|..|...|....+...|.+.|+...+.++. ..++..+.+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555554444432 222457888999999888999999999999888664 478899999999999999999984332
Q ss_pred HHcC-CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHH
Q 009782 186 EEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264 (526)
Q Consensus 186 ~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (526)
-+.. ...-...|..+.-.+...++...+..-|+...+.. +.|...|..+..+|.++|.+..|.++|++...-++..+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 2211 00011123333345678899999999999888765 568889999999999999999999999887764443322
Q ss_pred ---HHHHHHHhCCChHHHHHHHHHHHHcC------CCCcHHHHHHHHHHh---h-------hhHHHHHHHHHHHHhCCCC
Q 009782 265 ---SMLTGYIHHGLLVEAFDIFRGMILNG------FDPDPVAISSILANA---S-------LLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 265 ---~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~---~-------~~~~a~~~~~~~~~~~~~~ 325 (526)
......+..|.+.+|+..+......- ..--..++....... | -.+.+.+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 23334577899999999888776531 000111111111110 2 2333344444333333333
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCC--CCChhHHHHHHHh-----cCCchH----HHHHHHHHHHCCCCCCHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHA-----HSKDHE----ALIYFEQMERDGVLPDHLTFV 394 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~-----~~~~~~----a~~~~~~m~~~~~~p~~~~~~ 394 (526)
+...|-.+.++| .+|-... .|+.....++..- .+...+ +.+.+-.-.. ...+..+|.
T Consensus 712 ~~~~Wi~asdac----------~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~Wy 779 (1238)
T KOG1127|consen 712 DRLQWIVASDAC----------YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWY 779 (1238)
T ss_pred hHHHHHHHhHHH----------HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHH
Confidence 333443333322 2333222 1222222222221 111112 1111111111 111233343
Q ss_pred HHHHHHhc----c----CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHH
Q 009782 395 SLLSACAH----L----GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGAL 465 (526)
Q Consensus 395 ~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l 465 (526)
.|...|.+ . .+...|...++..++. -.-+..+|+.|.-. ...|++.-|...|-+..-..|.. .+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 34333332 1 2334677777777753 23356666666554 66688888888887777777754 889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
...+.+..|++-|.+.+.+...+.|.|...|-....+....|+.-++..+|..
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888888888888988888887765
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=6.7e-08 Score=55.32 Aligned_cols=34 Identities=47% Similarity=0.648 Sum_probs=31.3
Q ss_pred hCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
.|+.||..+|+++|.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778999999999999999999999999999984
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00057 Score=74.04 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=88.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCC------CChhH--HHH---HHHhcCCchHHHHHHHHHHHC----CCCCCHHHH-
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQ------KDVVS--WNS---IIHAHSKDHEALIYFEQMERD----GVLPDHLTF- 393 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~--~~~---li~~~~~~~~a~~~~~~m~~~----~~~p~~~~~- 393 (526)
+..+...+...|++++|...+++... +.... +.. +....|+.++|...+.+.... +........
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 33444555666777777666665432 11111 111 111156666676666665431 111000000
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHhhcC------CCCCH-HHH
Q 009782 394 -VSLLSACAHLGSVKVGERLFSVMVEKYGISPR---VEHYACMVNLYGRAGLIDEAYSMIVEKME------FEASP-VVW 462 (526)
Q Consensus 394 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~-~~~ 462 (526)
...+..+...|+.+.|.+.+...... ..... ...+..+..++...|+.++|...+.+.+. ..++. .+.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11223344578888888887665431 11111 11134567778888999998888855542 22222 455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..+..++...|+.++|...+.+++++...
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66667788899999999999998886543
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=2.8e-06 Score=82.00 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=155.0
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
.+|-...-..+...+...|-...|..+|++.. .|.-.|.+ .|+.++|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445555678889999999999999999765 33334444 3677889998888777 57888999999888
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
.....-+++|.++.+....+ .-..+.....+.++++++.+.++..+.++|- ..+|-.+..+..+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88777788888888876543 2233334445689999999999999999994 59999999999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
.+.|.....++|++..+|+.+..+|.+.|+..+|...+++..+.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999887654
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.2e-05 Score=68.54 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=105.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHH-HhcCC--hHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYAC-YLHGN--VCM 477 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~--~~~ 477 (526)
..++.+++...++...+. -+.|...|..+...|...|++++|...|.+.+...|+. ..+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 467778888888888763 45589999999999999999999999999999999955 7778888764 67777 599
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|.++++++++.+|++..++..++.++.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999997653
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=1.5e-06 Score=69.72 Aligned_cols=114 Identities=10% Similarity=0.028 Sum_probs=78.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC
Q 009782 377 YFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 377 ~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (526)
.+++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...+.+.+..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 34433 34556666677777888888887777653 2336667777777777778888888777666666
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 456 EAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 456 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.|+ ...+..+...+...|+++.|.+.+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 664 366666777777778888888888888877777655
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=4.5e-06 Score=70.96 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=114.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHH
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGA 464 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 464 (526)
..|+......+-.++...|+-+....+...... ..+.|......++....+.|++..|+..+.+.....| |...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345433335666777788888888888877653 3344666777799999999999999999988888777 5599999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..+|.+.|+++.|...|.+++++.|.++..++.|+-.|.-.|+++.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998876544
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=1.6e-06 Score=68.55 Aligned_cols=98 Identities=9% Similarity=-0.047 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+....-.+...+...|++++|.++|.-.....|.. .-|-.|.-.+...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555567777889999999999996666778855 77888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|+.++|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999877643
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=2.9e-06 Score=79.27 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 469 (526)
.....|+..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|++++.+.+...| +...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556777777889999999999999875 355 445688888889999999999999998788 446777777788
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+.++++.|+++.+++.+..|++-.+|..|+.+|...|++++|+..+.-+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999888765
No 123
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=1.5e-05 Score=73.14 Aligned_cols=196 Identities=8% Similarity=0.058 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHhccCCC---CChhHHHH---HHHhcCCc--hHHHH
Q 009782 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG-KLDQACWLFDHMPQ---KDVVSWNS---IIHAHSKD--HEALI 376 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~---li~~~~~~--~~a~~ 376 (526)
+..++|..+.+.++..... +..+|+....++...| ++++++..++++.+ .+..+|+. ++...++. ++++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 5556666666665554321 3334444444445555 45666666655543 12223331 22223432 44555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---CCh----HHHHHHH
Q 009782 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA---GLI----DEAYSMI 449 (526)
Q Consensus 377 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~ 449 (526)
+++++.+... -|..+|.....++...|+++++++.++++.+. . .-|...|+.....+.+. |.. +++++..
T Consensus 130 ~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6656555321 13445665555566666666666666666653 1 22444444444443332 212 3444444
Q ss_pred HhhcCCCCCH-HHHHHHHHHHHhc----CChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 450 VEKMEFEASP-VVWGALLYACYLH----GNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 450 ~~~~~~~p~~-~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.+++...|+. ..|+.+...+... ++..+|.+.+.++.+.+|.++.++..|+.+|+.
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5556666633 5555555555542 233446666666666666666666666666654
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=0.00022 Score=71.71 Aligned_cols=369 Identities=14% Similarity=0.022 Sum_probs=228.3
Q ss_pred ChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
+...|...|-+....+++ ...|..|...|...-+...|...|+...+.. .-|..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 366666666665555554 3679999999998889999999999988754 23555678888999999999999988333
Q ss_pred HHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 220 AVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 220 ~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
.-+.. ...-..-|-...-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|.++|.+...- +|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 22211 000111222244456778889999998887765 46678899999999999999999999987764 5554
Q ss_pred H--HHHHHHHHh--hhhHHHHHHHHHHHHhC------CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHH-HHH
Q 009782 296 V--AISSILANA--SLLRIGAQVHGWVLRRG------VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW-NSI 364 (526)
Q Consensus 296 ~--~~~~ll~~~--~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l 364 (526)
. .|-..+..| |...++...+..+.... ...-..++-.+...+.-.|-..+|..++++-. ..+ .++
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l 705 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHH
Confidence 3 222222222 88888887777765431 11112222222233333333344444443322 111 112
Q ss_pred HHhcCCc-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH---H---HHHHHHHHHHHhcCCCCchhHHHH
Q 009782 365 IHAHSKD-------HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV---K---VGERLFSVMVEKYGISPRVEHYAC 431 (526)
Q Consensus 365 i~~~~~~-------~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~p~~~~~~~ 431 (526)
+...... .+|..+|-... .. .|+......+..-....+.. + .+.+.+-.-. .+..++.+|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyN 780 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYN 780 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHH
Confidence 2221111 34555555544 11 33333333333323333322 2 1222222211 22334566666
Q ss_pred HHHHHHh----c----CChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 432 MVNLYGR----A----GLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 432 l~~~~~~----~----g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
|+..|.+ . .+...|+..+.+.++..-+. .+|+.|... ...|++.-|...|-+....+|.....|..++..
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVL 859 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecccee
Confidence 6655544 1 23346788887888766655 777777666 667889999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 009782 503 YGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~~ 522 (526)
+....+++-|...|.+.+.-
T Consensus 860 ~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred EEecccHHHhhHHHHhhhhc
Confidence 99999999999999887643
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.5e-05 Score=65.07 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=106.0
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCh----hHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQ--KDV----VSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 405 (526)
.++-+....|+.+.|...++.+.. |+. ..+..++.+.++.++|+++++.+.+.+ +-|..++-.=+...-..|.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 344445555666666666655442 221 234555666777777888887777754 2244455555555555676
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh---cCChHHHHHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYL---HGNVCMGETA 481 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~a~~~ 481 (526)
.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.+++.+=..|- +..+..+...+.- ..+.+.|.++
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6677777777776 46778888888888888888888888888777777774 4555556555433 3366778888
Q ss_pred HHHHHccCCCCcchH
Q 009782 482 AQKLFELEPDNEHNF 496 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~ 496 (526)
|.+++++.|.+...+
T Consensus 214 y~~alkl~~~~~ral 228 (289)
T KOG3060|consen 214 YERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHhChHhHHHH
Confidence 888888888554433
No 126
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=5.1e-05 Score=69.64 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=132.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHH----HHHHHhh-hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS----SILANAS-LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (526)
+-..+...+..++|+.+..++++. .|+..|.- .++...+ .++++...++.+.+...+ +..+|+....++.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334455677889999999988874 56655432 2344455 578888888888877543 455677665556666
Q ss_pred CCh--HHHHHHhccCCC---CChhHHHH---HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCH---
Q 009782 341 GKL--DQACWLFDHMPQ---KDVVSWNS---IIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL---GSV--- 406 (526)
Q Consensus 341 g~~--~~A~~~~~~~~~---~~~~~~~~---li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~--- 406 (526)
|+. +++..+++.+.+ .|..+|+. ++..+++.+++++.++++++.+.. |...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 653 677888877765 34455553 344478889999999999986544 445666665555444 222
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc----CChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh
Q 009782 407 -KVGERLFSVMVEKYGISPRVEHYACMVNLYGRA----GLIDEAYSMIVEKMEFEAS-PVVWGALLYACYL 471 (526)
Q Consensus 407 -~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 471 (526)
+...++...+... .+-|...|+.+...+... ++..+|.+.+.+.+...|. ...+..|+..|+.
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 4567777666652 344788888888888773 3456688888777776664 4667777777764
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=1.4e-05 Score=64.63 Aligned_cols=127 Identities=18% Similarity=0.127 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGAL 465 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l 465 (526)
..|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|...|...+...|++ .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47888999999999987633221 23444456678889999999999997777666655 344556
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
...+...|++++|+..++.. .-.+-.+..+...+.+|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888999999999999763 233335667888999999999999999999864
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=4.8e-05 Score=70.60 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 480 (526)
..|+.+.|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.+++++...|+. .....+..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34556666666666554 233344444555555666666666666665555555653 444555555666666666666
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 009782 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
++++...-+|+|+..|..|.++|...|+..+|..-
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 66666666666666666666655555555554443
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=7e-05 Score=77.76 Aligned_cols=206 Identities=14% Similarity=0.109 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhh-ccC---CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLR---KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 165 (526)
+...|-..|.-....++.+.|.++.++.+.. ++. --..+|.++++.-..-|.-+...++|++..+---.-..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4556777777788899999999999998763 111 123578888888888888899999999987653223568999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCC
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~ 244 (526)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+.-.. --.....-.+..-.+.||
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999876 3456778999999999999999999999988875321 134455666777789999
Q ss_pred HHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 245 IVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 245 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
.+++..+|+..... -...|+..|+.-.++|+.+.+..+|++....++.|-..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 99999999988753 35789999999999999999999999999988876543
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=9.7e-06 Score=64.96 Aligned_cols=109 Identities=13% Similarity=0.184 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 412 LFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 412 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
.++.+. ...| +......+...+...|++++|.+.+.+.....| +...+..+...+...|++++|...++++.+..
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555 3455 455667788889999999999999977777777 45888888999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999887654
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0032 Score=63.16 Aligned_cols=434 Identities=12% Similarity=0.115 Sum_probs=248.5
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH--HccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETC--YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
...+++++|+....++.+.. |+ ..|..++.++ .+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 35688999999999988764 22 3455566654 5789999999999888776634 88899999999999999999
Q ss_pred HHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC-C---------hHHHH
Q 009782 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-L---------IRVGE 214 (526)
Q Consensus 145 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~---------~~~a~ 214 (526)
|..+|++.....|+-.-...+..+|++.+++.+-.+.--+|-+. ++-+...|=++++...+.- . +.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999999999887555667778888888877655544444432 3334455555555544221 1 23455
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhh-c----CCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 215 KVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDR-I----GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 215 ~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+..+.+.+.+ ..-+..-.-.-...+-..|++++|.+++.. . ...+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666665543 111222222233445678999999999832 2 223334445567778888999999998888888
Q ss_pred cCCCCcH-HH-----HHHHHHHh-----------hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHH---hcCChHHHHH
Q 009782 289 NGFDPDP-VA-----ISSILANA-----------SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS---KDGKLDQACW 348 (526)
Q Consensus 289 ~~~~p~~-~~-----~~~ll~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~ 348 (526)
.| +|. .+ +..+-... +..+...+......... ..+ .|-+-+.++. .-|+.+++..
T Consensus 255 k~--~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rg--p~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 255 KG--NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRG--PYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred hC--CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccC--cHHHHHHHHHHhcccCChHHHHH
Confidence 75 332 11 11121111 12222222222222221 111 2222233332 3366666543
Q ss_pred Hh-ccCCC-------------------------------CChh---------HHHHHHHh-cCCc-----hHHHHHHHHH
Q 009782 349 LF-DHMPQ-------------------------------KDVV---------SWNSIIHA-HSKD-----HEALIYFEQM 381 (526)
Q Consensus 349 ~~-~~~~~-------------------------------~~~~---------~~~~li~~-~~~~-----~~a~~~~~~m 381 (526)
.| ++.-. ++.. +....+.. +|.+ +....++.+.
T Consensus 330 ~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl 409 (932)
T KOG2053|consen 330 YYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKL 409 (932)
T ss_pred HHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 32 21111 1111 11111111 3433 3344444333
Q ss_pred H---HCC------CCCCHH---------HHHHHHHHHhccCCHHH---HHHHHHHHHHhcCCCC-chhHHHHHHHHHHhc
Q 009782 382 E---RDG------VLPDHL---------TFVSLLSACAHLGSVKV---GERLFSVMVEKYGISP-RVEHYACMVNLYGRA 439 (526)
Q Consensus 382 ~---~~~------~~p~~~---------~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 439 (526)
. ++| .-|+.. +.+.|++.+.+.++... |+-+++.-.. ..| |..+--.+++.|.-.
T Consensus 410 ~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 410 KLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHh
Confidence 2 233 223322 34577788888887664 3444444332 233 455556788999999
Q ss_pred CChHHHHHHHHhhcCCCC-CHHHHHHHH-HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH
Q 009782 440 GLIDEAYSMIVEKMEFEA-SPVVWGALL-YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 440 g~~~~A~~~~~~~~~~~p-~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
|-+..|.++| +.+.++- ...|...++ ..+...|.+..+...+...++..-++..--..++..-.+.|.|.+..+
T Consensus 487 Ga~p~a~~~y-~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 487 GAFPDAYELY-KTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred cCChhHHHHH-HhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 9999999999 7776543 224443333 345667788888888777777543332222233333345566655544
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00023 Score=60.77 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=127.9
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCCCCCCHH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDGVLPDHL 391 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~~~p~~~ 391 (526)
.+.+++.......+......-...|++.|++++|++.......-+....+.-|.. ..+.+-|...+++|.+- . +..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d-ed~ 170 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI--D-EDA 170 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-hHH
Confidence 4444444444444444444556789999999999999988554444444433333 45668899999999872 2 445
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHH
Q 009782 392 TFVSLLSACAH----LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALL 466 (526)
Q Consensus 392 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 466 (526)
|.+.|..++.+ .+.+..|.-+|++|.+ ..+|+..+.+-...++...|++++|..++++++...+ ++.++..++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 67767666653 4578999999999986 4789999999999999999999999999988887766 567887777
Q ss_pred HHHHhcCCh-HHHHHHHHHHHccCCCCcc
Q 009782 467 YACYLHGNV-CMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 467 ~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 494 (526)
..-...|.. +...+...++....|..+.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 777667765 4455677777777777554
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=3.6e-05 Score=65.03 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=126.3
Q ss_pred cCChHHHHHHhccCCC--------CChhH-HHH-HHHh--cCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCH
Q 009782 340 DGKLDQACWLFDHMPQ--------KDVVS-WNS-IIHA--HSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSV 406 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~--------~~~~~-~~~-li~~--~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~ 406 (526)
..+.++..+++.++.. ++..+ |.- +|.+ +++.+.|..+++++..+ + |.+. .-..-.--+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4567778777776652 22211 221 2223 68888899999988775 3 4443 222222224456888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKL 485 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 485 (526)
++|+++++.+.+. -+.|..++-.=+-.....|+.-+|++-+.+-+..-| |...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998874 244666776666666677877788887766665555 6788999999999999999999999999
Q ss_pred HccCCCCcchHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 009782 486 FELEPDNEHNFELLIKIYGNAG---RLDDVERVERMLVDRG 523 (526)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g 523 (526)
+=++|-++..+..++..+.-.| +++-|.+++.+..+.+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999998888888888877666 4556788888777654
No 134
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=3.5e-05 Score=68.54 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCCh---hHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-c---cH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK---GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-F---PW 162 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~ 162 (526)
....+-.....+...|+++.|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+..|+. . ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455555566667777777777777776643 2222 345566677777777777777777776555432 1 23
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 009782 163 NSLISGYAEL--------GEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233 (526)
Q Consensus 163 ~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 233 (526)
..+..++... |++++|.+.|+.+... .|+.. .+..+..... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 3444444433 5677777777777654 34332 2211111100 00 0000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGN--KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
.+...|.+.|++++|...+++... |+ ...+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678888888888888887754 22 256778888888899999998888887654
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00012 Score=75.19 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHH
Q 009782 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIAL 181 (526)
Q Consensus 125 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~ 181 (526)
+...+..|+..+...+++++|.++.+......|+. ..|-.+...+.+.++..++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 44566677777777777777777777665555543 3333333355555554444433
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=6.9e-06 Score=71.27 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=88.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 477 (526)
..+.+++.+|...|.++.+ +.| |...|..=..+|.+.|.++.|++-.+.++.++|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 5677899999999999884 555 67777777889999999999999888888888876 899999999999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (526)
|++.|+++++++|++......|-.+--+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999998876666666655544433
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00016 Score=67.18 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=104.9
Q ss_pred cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 445 (526)
.++.++|+..++.+... .|+ ........+.+.+.++.++|.+.++.+.. ..|+ ....-.+.++|.+.|++.+|
T Consensus 319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 319 AGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHH
Confidence 47788999999998874 454 45666677778999999999999999985 4665 56667888999999999999
Q ss_pred HHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 446 YSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 446 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++.+.....| |+..|..|..+|...|+..++... ....|.-.|++++|...+....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999988887788 559999999999999998777544 445666667777776666665543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.29 E-value=1.3e-05 Score=62.49 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALL 466 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 466 (526)
++..+...+...|++++|.+.++.+.+.+.-.+ ....+..+..++.+.|++++|.+.+.+.+...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566667777788888888777765421111 1345556777777777888887777656655554 24566666
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHH
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
..+...|+.++|.+.++++++..|++..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777777777777777777777777665443
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=1.1e-05 Score=59.96 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+..+...+...|++++|...+.+.+...|+. ..+..+...+...|++++|.+.+++..+..|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4566777788888899988887777777754 667777778888889999999999988888888878888889999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 009782 508 RLDDVERVERMLVDRG 523 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g 523 (526)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999998888876543
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2.2e-06 Score=49.94 Aligned_cols=34 Identities=41% Similarity=0.780 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 194 (526)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888877763
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=4.7e-05 Score=71.32 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=73.8
Q ss_pred HHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh
Q 009782 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210 (526)
Q Consensus 131 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 210 (526)
+|+..+...++++.|..+|+++...+| .....++..+...++..+|.+++++..+. .+-|......-...+...++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP--EVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 444445556667777777777766666 44555666666666666677776666643 222333444444556666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 211 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
+.|+++.+++.+.. +.+..+|..|..+|...|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777666666552 3334466666666666666666666666665
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.0087 Score=60.17 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 461 VWGALLYACYLHGNV---CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+.+.|+..|.+.++. -+|+-+++..+...|.|...--.++++|+-.|-+..|.++++.|--+.|
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 446777888888875 5677888888889999999888899999999999999999988754443
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=9.3e-05 Score=75.09 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=122.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHH
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLI 166 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li 166 (526)
..++..+..|..+..+.|.+++|..+++...+.. +.+......+...+.+.+++++|+..+++....+|+. ...+.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3468899999999999999999999999999875 5667788889999999999999999999999988865 5677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 009782 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235 (526)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 235 (526)
.++.+.|++++|.++|++....+ +-+..++..+..++...|+.++|...|+...+.- .+....|+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 89999999999999999999832 3346788899999999999999999999988753 3444554443
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.20 E-value=1.9e-06 Score=62.27 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 009782 439 AGLIDEAYSMIVEKMEFEA---SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
.|+++.|+.++.+.+...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4666777777755555555 234444566777777777777777777 556666555566667778888888888877
Q ss_pred HHH
Q 009782 516 ERM 518 (526)
Q Consensus 516 ~~~ 518 (526)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.19 E-value=1.6e-05 Score=74.80 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=89.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN 474 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 474 (526)
-...+...|+++.|.+.|+++.+. -+.+...|..+..+|...|++++|+..+.+++...|+ ...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566779999999999999863 3336778888889999999999999999888888885 4788888889999999
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
+++|+..+++++++.|+++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999888666665554443
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=5.4e-05 Score=58.98 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELL 499 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 499 (526)
.++..++..+.+.|++++|.+.|.+.+...|+. ..+..+...+.+.|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888899999999999997777666653 466678888999999999999999999988775 4568889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+.++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999877643
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.7e-06 Score=48.50 Aligned_cols=34 Identities=32% Similarity=0.809 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 294 (526)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=70.14 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
..-+.+.+++.+|+..|.+++.+.|.. +.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445668899999999999999999955 7777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 009782 512 VERVERMLVDR 522 (526)
Q Consensus 512 A~~~~~~m~~~ 522 (526)
|.+.|++..+-
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999987654
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=3.9e-05 Score=64.21 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
..+..+...+...|++++|...|.+.+...|+ ...+..+...+.+.|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555666666666666555543332 13455555566666666666666666666666666666666666
Q ss_pred HHhcCC
Q 009782 503 YGNAGR 508 (526)
Q Consensus 503 ~~~~g~ 508 (526)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 655555
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.4e-06 Score=47.83 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 192 (526)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0012 Score=56.48 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=109.6
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDE 444 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 444 (526)
+++++|++.++... +......=...+.+..+.+.|.+.++.|.+- .+..+.+.|..++.+ .+...+
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhh
Confidence 66788888877622 2223333344466778899999999999752 355677777777654 457889
Q ss_pred HHHHHHhhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHhC
Q 009782 445 AYSMIVEKME-FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDR 522 (526)
Q Consensus 445 A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~ 522 (526)
|.-+|++.-+ ..|++.+.+-...++...|++++|..+++.++..+++++.+...++.+-...|+-.++ .+.+.++...
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999955555 6778899999999999999999999999999999999999999999888888887766 4466665543
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.3e-06 Score=47.57 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 293 (526)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=1.1e-05 Score=55.76 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG-RLDDVERVERMLVDR 522 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 522 (526)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34667778888888888888888888888888888888888888888888 688888888887653
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.09 E-value=1.2e-05 Score=54.72 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=40.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+...+...|++++|+..++++++..|.++.++..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777777777777776553
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.06 E-value=0.01 Score=55.09 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=115.7
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCC--CCChhH----------HHHHHHh----cCCchHHHHHHHHHHHCCCCCCH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVS----------WNSIIHA----HSKDHEALIYFEQMERDGVLPDH 390 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~----------~~~li~~----~~~~~~a~~~~~~m~~~~~~p~~ 390 (526)
..++..++....+.++...|...+.-+. +|+... ...++.. +.+..+-+.+|++....++ |.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--Dr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cH
Confidence 3456777888888888888887776544 343321 1111111 3334556777777766444 33
Q ss_pred H-HHHHHHHH---HhccCC-HHHHHHHHHHHHHhcCCCC-chhHHHHHH----HHHHhcC---ChHHH---HHHHHhhcC
Q 009782 391 L-TFVSLLSA---CAHLGS-VKVGERLFSVMVEKYGISP-RVEHYACMV----NLYGRAG---LIDEA---YSMIVEKME 454 (526)
Q Consensus 391 ~-~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~g---~~~~A---~~~~~~~~~ 454 (526)
. ....|+.+ +-+.|. -++|.++++.+.+ +.| |...-+... .+|.++= .+..- ... .+..|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f-i~e~g 451 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF-ITEVG 451 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHhcC
Confidence 2 22233332 344555 8889999998874 455 333322222 2222211 11111 112 24446
Q ss_pred CCCC----HHHHHHHHHH--HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 455 FEAS----PVVWGALLYA--CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 455 ~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+.|- ...-|.|..+ +..+|++.++.-.-..+.++.| ++.+|..++-++....+|++|..++.++
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6662 2555666665 5679999999999999999999 6888999999999999999999998865
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00014 Score=63.84 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCCcchHHH
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG---NVCMGETAAQKLFELEPDNEHNFEL 498 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (526)
+-|...|..|...|.+.|+.+.|..-|.++....|+. ..+..+..++..+. ...++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4477888888888888888888888887777777744 66666666544322 3567778888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 499 LIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|+..+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888888888888888888887653
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=9e-05 Score=69.75 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
+++++|+++|++.++. .| +...|..+..+|...|++++|...++.+.+. -+.+...|..+..+|...|++++|..
T Consensus 16 ~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 16 DDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555555542 22 2334444444555555555555555555432 11134444455555555555555555
Q ss_pred HHHhhcCCCCCH
Q 009782 448 MIVEKMEFEASP 459 (526)
Q Consensus 448 ~~~~~~~~~p~~ 459 (526)
.|.+.+...|+.
T Consensus 92 ~~~~al~l~P~~ 103 (356)
T PLN03088 92 ALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHhCCCC
Confidence 554455555544
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=6.4e-05 Score=62.68 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
....|..++..+...|++++|...|.+.+...|+. .++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777777888889999998887776655542 47788888888999999999999999998888888788888
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 009782 501 KIYG-------NAGRLDDVERVERM 518 (526)
Q Consensus 501 ~~~~-------~~g~~~~A~~~~~~ 518 (526)
.+|. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8887 77887766555544
No 159
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0028 Score=65.51 Aligned_cols=221 Identities=11% Similarity=0.093 Sum_probs=147.2
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 169 (526)
+...+..++..+...+++++|.++.+...+.. +-....|-.+...+...++.+.+..+ .++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv---------------~~l~~~ 93 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL---------------NLIDSF 93 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh---------------hhhhhc
Confidence 56778889999989999999999999776653 33334444444466666665555444 233334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 249 (526)
....++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++.+.. +-|..+.|.+...|... ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 4444554444444555543 2344577788889999999999999999999887 66888899999999988 999999
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh-CCCCchh
Q 009782 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR-GVEWDLC 328 (526)
Q Consensus 250 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~-~~~~~~~ 328 (526)
+++.+.. ..+...+++.++.++|.++... .|+...+- ..+.+.+... |...-..
T Consensus 170 ~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f------------~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 170 TYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFF------------LRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHH------------HHHHHHHHhhhccchhHH
Confidence 8877643 3477777888899999888875 34433321 1122222221 2223344
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
++-.+-..|...++|+++..+++.+.+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 455566677777777777777776664
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.04 E-value=0.00021 Score=59.86 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-c-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-R-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
..+..+...+...|++++|...|++..+. .-.+ + ...+..+...+.+.|++++|...+.+.+...|+. ..+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35677777888899999999999998864 2222 1 4678888899999999999999998888888854 66667777
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 468 ACYLHGN--------------VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 468 ~~~~~g~--------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.+...|+ +++|.+.++++++.+|++ |..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777776 567777788888888886 5666666665554
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=2.8e-05 Score=52.88 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
+...+.+.|++++|.+.|.+.+...|+. ..+..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667889999999999998888888855 8888888999999999999999999999999874
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.015 Score=55.18 Aligned_cols=417 Identities=10% Similarity=0.105 Sum_probs=230.2
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 168 (526)
-|..+|..+|+-+... ..+++.+.++++... ++.....|..-+..-.+..+++..+++|.+......+..-|..-|+-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3888999999876555 889999999988764 35566788888888888999999999999877665555667766664
Q ss_pred HHh-cCChHH----HHHHHHHH-HHcCCCCCcc-hHHHHHH---HH------hccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 169 YAE-LGEYED----AIALYFQM-EEEGVEPDQF-TFPRVLK---AC------AGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 169 ~~~-~~~~~~----a~~~~~~m-~~~~~~p~~~-t~~~ll~---~~------~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
--+ .++... ....|+-. .+.|+.+-.. .|+.-+. .. ....+++...++++++....+.-=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 433 233322 22233332 3335333322 2333332 22 2233556677777777643322111122
Q ss_pred HH------HHHHH-------HhcCCHHHHHHHHhhcCC---------CCc------------ccHHHHHHHHHhCC----
Q 009782 233 NA------LVDMY-------AKCGDIVKARTVFDRIGN---------KDL------------ISYNSMLTGYIHHG---- 274 (526)
Q Consensus 233 ~~------li~~~-------~~~g~~~~A~~~~~~~~~---------~~~------------~~~~~li~~~~~~g---- 274 (526)
+- =|+.. -+...+..|.++++++.. +.+ ..|-.+|.---..+
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 11 11110 122334555555554431 000 11222222111110
Q ss_pred --Ch--HHHHHHHHH-HHHcCCCCcHHH-HHHHHHHh-------hh-------hHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 275 --LL--VEAFDIFRG-MILNGFDPDPVA-ISSILANA-------SL-------LRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 275 --~~--~~a~~~~~~-m~~~~~~p~~~~-~~~ll~~~-------~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
.. ....-.++. |.--+..|+... ++..+... |+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000011111 111123333211 11111111 11 344555555544443333444444433
Q ss_pred HHHHhcC---ChHHHHHHhccCCC----CChhHHHHHHHhcCC---chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 009782 335 VVYSKDG---KLDQACWLFDHMPQ----KDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLP-DHLTFVSLLSACAHL 403 (526)
Q Consensus 335 ~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 403 (526)
+.--..- ..+.....++++.. .-..+|...+..-.+ ...|..+|.+..+.+..+ ....+++++..+|.
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 3221111 23444444444432 122344444444322 256889999999988887 66788889988775
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC--CCCH--HHHHHHHHHHHhcCChHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--EASP--VVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~--~~~~~l~~~~~~~g~~~~a~ 479 (526)
++.+.|.++|+.-.+++|-. ..--...++-+...++-..|..+|++.+.. .|+. ..|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 88899999999988864433 333356778888899999999999666654 4443 89999999999999999999
Q ss_pred HHHHHHHccCCCCc----chHHHHHHHHHhcCChH
Q 009782 480 TAAQKLFELEPDNE----HNFELLIKIYGNAGRLD 510 (526)
Q Consensus 480 ~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~ 510 (526)
++-++.....|.+. ..-..++.-|.-.+.+.
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 99888877665221 12344555555555544
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.92 E-value=2.9e-05 Score=53.56 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG-NVCMGETAAQKLFELEP 490 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 490 (526)
+...|..+...+...|++++|+..|.+.+...|+. ..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888999999999999999999999888865 88888889999999 79999999999998887
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00017 Score=53.19 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYL 471 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~ 471 (526)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+.+.+...|.. ..+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 455666778889999999999998763 23345677888899999999999999997777777755 578888889999
Q ss_pred cCChHHHHHHHHHHHccCCC
Q 009782 472 HGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~ 491 (526)
.|+.+.|...++++.+..|+
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999887763
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.89 E-value=0.0019 Score=52.14 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HH
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VV 461 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~ 461 (526)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++..|...+++.+...|+. .+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 577887778889999999999999999999887 54 4477888888999999999999999996666655533 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
...+.+.+...|+.++|+..|+.+..-.|+ +.........+.++|+.++|..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566778899999999999999999998887 455777788889999888876544443
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00089 Score=54.15 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=81.6
Q ss_pred CCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHH
Q 009782 369 SKDHEALIYFEQMERDGVLP--DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDE 444 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 444 (526)
++...+...++.+......- .......+...+...|++++|...|+.+... .-.|+ ......|...+...|++++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44455666666666642111 1234455667788899999999999999886 42232 2344557888999999999
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 445 AYSMIVEKMEFE-ASPVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 445 A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
|+..+ +..... ..+..+...+..+.+.|+.++|...|++++
T Consensus 104 Al~~L-~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATL-QQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHH-HhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999 544323 344667777888999999999999998763
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.00051 Score=67.59 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 009782 372 HEALIYFEQMERDGVLPDHL-TFVSLLSACAHL--------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
.+|..+|++..+ ..|+.. .|..+..++... .+...+.+..+..........+...|..+.-.....|++
T Consensus 359 ~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 359 NKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 457777777776 556643 343333333211 123344444444333212334567788777777778999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
++|...+.+++..+|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 437 ~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999998888999999999999999999999999999998775
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2.7e-05 Score=43.72 Aligned_cols=29 Identities=45% Similarity=0.960 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEG 189 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 189 (526)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.83 E-value=0.0035 Score=60.42 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhc
Q 009782 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351 (526)
Q Consensus 277 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 351 (526)
-+..--++++++.|-.|+.......+.-.|++.+|.++|.+- |.. |..+..|.....++.|.+++.
T Consensus 617 L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhh
Confidence 344455677788888888877776666557777777776542 221 233444444444555544443
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00056 Score=57.03 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
...+..+...+...|++++|...|+.......-++ ...++..+...|...|++++|+..+.+.+...|+. ..+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34667777778888999999999999975411111 23578889999999999999999998888877754 56666666
Q ss_pred HHH-------hcCChH-------HHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 468 ACY-------LHGNVC-------MGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 468 ~~~-------~~g~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
.+. ..|+++ +|..++++++...|++ +......+...|++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 666 777776 4455555566667764 34445555555554
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=2.9e-05 Score=53.38 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=28.2
Q ss_pred hcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 438 RAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..|++++|++.|.+.+...| +...+..+..+|.+.|++++|.+.++++....|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 34555555555544444444 2244444555555555555555555555555555433
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00025 Score=52.15 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACAGLG--------LIRVGEKVHLDAVRFGFGFDGFVLN 233 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~~ 233 (526)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999877543 2446778899999999999999999
Q ss_pred HHHHHHHh
Q 009782 234 ALVDMYAK 241 (526)
Q Consensus 234 ~li~~~~~ 241 (526)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00065 Score=64.14 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=101.1
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch
Q 009782 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT----AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196 (526)
Q Consensus 121 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 196 (526)
+.+.+......+++.+....+++.+..++-+..... ..+.+..++++.|.+.|..+.++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566667777888777788889999888876552 2236678999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 197 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
++.||..+...|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777777777666666665
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.76 E-value=0.00011 Score=51.25 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=30.1
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.|.+.++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.+++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555443
No 175
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=4.2e-05 Score=42.90 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (526)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0022 Score=58.48 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=59.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-----RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG 473 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 473 (526)
..+.|++..|.+.+.+.. ++.| +...|.....+..+.|+..+|+.-..+++.++|.. ..+..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 356677888888887776 4444 35556666666777788888888776676666543 44444445566677
Q ss_pred ChHHHHHHHHHHHccCCC
Q 009782 474 NVCMGETAAQKLFELEPD 491 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~ 491 (526)
++++|.+.++++.+...+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 788888888887775544
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.00064 Score=54.33 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
....-+...|++++|..+|.-..-.+| +...|..|...+...+++++|+..|..+..+.++|+..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 344445678888888888833334455 4566677777788888889999888888888888888888889999999999
Q ss_pred HHHHHHHHHHHh
Q 009782 510 DDVERVERMLVD 521 (526)
Q Consensus 510 ~~A~~~~~~m~~ 521 (526)
++|.+.|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 998888877665
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.67 E-value=0.00052 Score=61.09 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALL 466 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 466 (526)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|.+.+...|+ +..+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555555666888888888888876521111 1346667778888888888888888666655554 24555556
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+...|+.+.|...|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677788888888888888888887654
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.00022 Score=51.42 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.|+++.|..+++++.+.....++...+..+..+|.+.|++++|.+++.+ .+..|.. ...-.+..++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677888888888876522122444555577888888888888888844 5555544 4444556677788888888887
Q ss_pred HHHH
Q 009782 482 AQKL 485 (526)
Q Consensus 482 ~~~~ 485 (526)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7753
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=6e-05 Score=51.81 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=25.7
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
..|++++|++.++++++..|++..++..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555554443
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.00091 Score=60.72 Aligned_cols=136 Identities=10% Similarity=0.119 Sum_probs=92.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
+|-.++....+.+..+.|..+|.+..+.. ..........+++..+ ..++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---------------------------~~~~~vy~~~A~~E~~-~~~d~~~ 54 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK---------------------------RCTYHVYVAYALMEYY-CNKDPKR 54 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------CS-THHHHHHHHHHHH-TCS-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHH-hCCCHHH
Confidence 45556666666666666666665443211 1233333444444433 3467777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
|..+|+...+. +..+...|...++.+...|+.+.|..+|++.+..-|... .|...+..-.+.|+.+...++.++
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999885 555777788888999999999999999988887666554 888888888999999999999999
Q ss_pred HHccCCCCcc
Q 009782 485 LFELEPDNEH 494 (526)
Q Consensus 485 ~~~~~p~~~~ 494 (526)
+.+..|.+..
T Consensus 133 ~~~~~~~~~~ 142 (280)
T PF05843_consen 133 AEELFPEDNS 142 (280)
T ss_dssp HHHHTTTS-H
T ss_pred HHHHhhhhhH
Confidence 8888777443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.0015 Score=50.08 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC---HHHHH-HHHHHHHh
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS---PVVWG-ALLYACYL 471 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~-~l~~~~~~ 471 (526)
.++-..|+.++|..+|++..+. |.... ...+-.+...|...|++++|..++.+.+...|+ ..... .+.-++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444555555555555555554 44432 223344455555555555555555444444444 21111 11223444
Q ss_pred cCChHHHHHHHHH
Q 009782 472 HGNVCMGETAAQK 484 (526)
Q Consensus 472 ~g~~~~a~~~~~~ 484 (526)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 5555555554443
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.016 Score=52.96 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----chh-HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH------
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-----RVE-HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP------ 459 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------ 459 (526)
.+..+...+.+.|++++|.++|++.... .... +.. .|-..+-++...|+...|.+.+.+.....|.-
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 5566777788888888888888887654 2211 121 22333445666788888888886666555522
Q ss_pred HHHHHHHHHHH
Q 009782 460 VVWGALLYACY 470 (526)
Q Consensus 460 ~~~~~l~~~~~ 470 (526)
.....|+.++-
T Consensus 236 ~~~~~l~~A~~ 246 (282)
T PF14938_consen 236 KFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.082 Score=51.96 Aligned_cols=174 Identities=12% Similarity=0.101 Sum_probs=90.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccC--------CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLR--------KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 158 (526)
.|.+..|..+.......-.++.|...|-.... .|+. .+.....+=+.+| -|++++|++++-.+..++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 45666777776666555566666665543322 1111 1111112222222 4777888877777766554
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 009782 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD----QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234 (526)
Q Consensus 159 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 234 (526)
.|..+.+.|++-...++++. -|-..| ...++.+...++....++.|.+.+..-... ..
T Consensus 766 ------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 34555666666555554432 111111 124566666666666666666665543211 23
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 283 (526)
.+.++.+..++++.+.+-..+++ |......+...+...|.-++|.+.+
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 55566666666665555555544 2334445566666666666666554
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0036 Score=61.80 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 009782 385 GVLPDHLTFVSLLSACAHL-----GSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRA--------GLIDEAYSMIV 450 (526)
Q Consensus 385 ~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 450 (526)
+.+.|...|...+++.... ++...|..+|+++.+ ..|+ ...|..+..++... .++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3556778888888875432 237789999999986 4675 45555544444332 12334444443
Q ss_pred hhcCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 451 EKMEF--EA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 451 ~~~~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+.... .| ++..+..+.......|++++|...++++++++|. ..+|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43332 33 4477777777777889999999999999999995 77899999999999999999999998876543
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0012 Score=59.92 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL-YGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYA 468 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 468 (526)
.+|..+++...+.+..+.|..+|+++.+. -..+...|...... |...++.+.|..+|+..++.-| +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999853 22244455444444 3335677779999988887666 45788888899
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNE---HNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+...|+.+.|..+|++++...|.+. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999776644 5799999999999999999999988865
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0019 Score=51.42 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=78.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.-.+...+...|++++|..+|+.+.. +.| +..-|-.|.-++-..|++++|+..|..+....|+ +..+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 33445556788999999999999885 455 6677788999999999999999999888888885 488888999999
Q ss_pred hcCChHHHHHHHHHHHccC
Q 009782 471 LHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~ 489 (526)
..|+.+.|.+.|+.++..-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999888754
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.52 E-value=0.0018 Score=61.23 Aligned_cols=123 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh--ccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--CCcc
Q 009782 85 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN--LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--AFAF 160 (526)
Q Consensus 85 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 160 (526)
.+.+.+...+..++..+....+++.+..++...... ....-..+..++++.|.+.|..++++.+++.=..-| |+..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 455567888888999998888899999988877654 223334566799999999999999999998776665 4568
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 207 (526)
++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887777888887777776654
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.0017 Score=54.24 Aligned_cols=113 Identities=21% Similarity=0.183 Sum_probs=81.0
Q ss_pred CCCcchHHHHHHHHh-----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHH
Q 009782 191 EPDQFTFPRVLKACA-----GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265 (526)
Q Consensus 191 ~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (526)
..|..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+ +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------A 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------H
Confidence 456778888888776 457888888999999999999999999999988754 3221 011111 1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+-.. .-.+-+-|++++++|...|+.||..|+..++..+|....+..-+.+|
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 1111 12345668999999999999999999999999997765555444443
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.48 E-value=0.0026 Score=46.91 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhCCCCchhHHh
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANA-----------SLLRIGAQVHGWVLRRGVEWDLCIAN 331 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 331 (526)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+. +++-....+++.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445566666889999999999999999 89999999988776 34556778888888889999999999
Q ss_pred HHHHHHHh
Q 009782 332 SLIVVYSK 339 (526)
Q Consensus 332 ~l~~~~~~ 339 (526)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887764
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0011 Score=60.33 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH---HHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhc------CC-CCCH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVM---VEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKM------EF-EASP 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~p~~ 459 (526)
..|..|...|.-.|+++.|....+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+..+ +. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35677777777889999988766542 22334332 35667788899999999999999985544 21 2234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELE------PDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
....+|...|.-..+++.|+.++.+-+.+. -....++.+|+.+|...|..++|..+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888888889999999888766532 2234578999999999999999988766543
No 192
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=0.00012 Score=41.73 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=30.7
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChHHHHH
Q 009782 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.43 E-value=0.00062 Score=47.47 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
..|.+.+++++|.+++.+.+...|+. ..+......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 56778888888888887788888854 6677778888888888888888888888888776543
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.0084 Score=54.71 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC-------CCH
Q 009782 392 TFVSLLSACAHL-GSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE-------ASP 459 (526)
Q Consensus 392 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~ 459 (526)
.+..+...|... |+++.|.+.|+++.+-+..... ...+..+...+.+.|++++|.++|.+..... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566677777 8999999999988765332222 3456677888999999999999995443211 111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHHH
Q 009782 460 -VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-----NFELLIKIYGN--AGRLDDVERVERML 519 (526)
Q Consensus 460 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m 519 (526)
..+-..+-.+...||...|.+.+++.....|.-.. ....|+.++-. ...+++|..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23333444667789999999999999998875322 34556677654 33455665555543
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.0032 Score=56.08 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc---chHHHHH
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE---HNFELLI 500 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 500 (526)
.|...+..+.+.|++++|...|.+.+...|+. ..+-.+...|...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444566789999999997777777764 4677788888999999999999999998877754 4455667
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 009782 501 KIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+|...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999888764
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.11 Score=47.50 Aligned_cols=269 Identities=17% Similarity=0.142 Sum_probs=164.0
Q ss_pred cCCHHHHHHHHhhcC---CCCcccHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCcHHHH--HH-HHHH--hhhhHHH
Q 009782 242 CGDIVKARTVFDRIG---NKDLISYNSMLTG--YIHHGLLVEAFDIFRGMILNGFDPDPVAI--SS-ILAN--ASLLRIG 311 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~-ll~~--~~~~~~a 311 (526)
.||-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |..... .. .|.+ .|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555554443332 2333333333332 23356777777777777652 222111 11 1111 1666666
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-----CChh--HHHHHHHh------cCCchHHHHHH
Q 009782 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVV--SWNSIIHA------HSKDHEALIYF 378 (526)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~------~~~~~~a~~~~ 378 (526)
..+-+..-..... -.-...+.+...|..|+|+.|+++++.-.. +++. .-..|+.+ -.+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6665555444322 234567888999999999999999986543 4432 12233333 23333444444
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH-HHHHhhcCCC
Q 009782 379 EQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY-SMIVEKMEFE 456 (526)
Q Consensus 379 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 456 (526)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+..... +-..+.-..+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC
Confidence 44333 677764 4455667889999999999999999864 666665433 3345666543221 1111233557
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 009782 457 ASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA-GRLDDVERVERMLVDR 522 (526)
Q Consensus 457 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 522 (526)
|+. .....+..+....|++..|..-.+.+....|. ...|-.|.++-... |+-.++.+.+-+.++.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 765 77777888889999999999999999999998 45588888887654 9999999988777654
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.13 Score=47.57 Aligned_cols=284 Identities=13% Similarity=-0.035 Sum_probs=130.7
Q ss_pred HHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHH
Q 009782 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 179 (526)
+.+..++..|+..+...++.. +.+..-|..-...+...|++++|.--.+.-...++. +..+.-.-.++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 344556777777777777765 444566666666666677777776655444333221 122222223333333333343
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHH-HHHHHhcCCHHHHHHHHhhcCC
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNAL-VDMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~ 257 (526)
+.++ |...| ....++..++....... +|.-..+..+ ..++.-.|+.++|.+.--.+.+
T Consensus 138 ~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 138 EKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 3333 11111 00111111111111111 1323333322 2344556666666665544444
Q ss_pred CCc-ccHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 258 KDL-ISYNSMLT--GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 258 ~~~-~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
-|. ..+..+++ ++.-.++.+.|...|.+.+.. .|+...-...-. ....++.+... .
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~-------~~k~le~~k~~------------g 256 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASM-------MPKKLEVKKER------------G 256 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhh-------hHHHHHHHHhh------------h
Confidence 322 22222232 333456677777777766553 354433222111 11111222222 2
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 009782 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 414 (526)
.-..+.|++..|.+.|.+....|+. ++.|+...|.....+..+.|+.++|+.--+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~-------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPS-------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCcc-------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 3456778888888888776642221 244455555555555556666666665555
Q ss_pred HHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 415 VMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 415 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+..+ +.|. +..|..-..++...++|++|++-+.+.+.
T Consensus 312 ~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 312 EALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5442 2221 22222223344445556666665555553
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.34 E-value=0.00097 Score=62.42 Aligned_cols=98 Identities=7% Similarity=0.006 Sum_probs=75.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
.+...+..+..+|...|++++|+..|.+++..+|+.. +|..+..+|...|+.++|+..+++++++.+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 3678889999999999999999999988999999763 4889999999999999999999999997422 13322
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCCC
Q 009782 500 IK--IYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 500 ~~--~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.. .+....+.++..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11 12233445577788888887775
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.13 Score=47.45 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 470 (526)
.+.+..+.-|...|+...|.++-++. .+ |+...|..-+.+|+..++|++-.++. .. +-.+.-|..++.+|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa-~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFA-KS---KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHH-hC---CCCCCChHHHHHHHH
Confidence 35666677778889988887775554 45 78899999999999999999988866 33 234577889999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+.|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988887 2246678888999999998776443
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0078 Score=53.10 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHHhhcCCCCCH-HHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG---LIDEAYSMIVEKMEFEASP-VVWG 463 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~-~~~~ 463 (526)
-|...|..|..+|...|+.+.|...|....+. -.++...+..+..++.... ...++.+++.+.+..+|+. .+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 36679999999999999999999999999864 3446666777777665433 5678899999999999965 6677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
-|...+...|++.+|...++.+++..|.+.. +..++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHHH
Confidence 7777899999999999999999999888665 444443
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.23 E-value=0.18 Score=47.14 Aligned_cols=364 Identities=14% Similarity=0.070 Sum_probs=174.2
Q ss_pred chHHHHHHHHHHHHHHhhC--CCCC---Ch--------hh-HHHHHHHHHccCChHHHHHHHHHHhhhcc----CCChhH
Q 009782 67 TKLQALDSIIQDLESSVQN--GITV---QT--------ET-FASLLETCYQLKAVEHGIKLHRLIPTNLL----RKNKGI 128 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~--~~~~---~~--------~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 128 (526)
-+.+.+++|++.+..+..+ +-.+ |. .. =+..++.+...|++.++..+++.+...-+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3778999999999998876 3222 11 11 23456677889999999999998876444 488999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccccC-CCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 129 SSKLLRLYATFGLIDEAHQVFDQMSNR-TAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 129 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
|+.++-.+++. .|-++.+. ..+. ..|.-++-.|.+.=. .++.-.=..+.|.......++....-
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 99988777653 23222111 1111 224444444443211 11110001122333333333332221
Q ss_pred --cCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcC--------CCCcccHHHHHHHHHhCCC
Q 009782 207 --LGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGDIVKARTVFDRIG--------NKDLISYNSMLTGYIHHGL 275 (526)
Q Consensus 207 --~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~ 275 (526)
.....--.+++..-...-+.|+-. +...+..-+.. +.+++..+-+.+. +.=+.++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222233333333333444432 23333333333 3344433333222 2334578888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCcHH----------HHHHHHH----HhhhhHHHHHHHHHHHHhCCCCchhHHhHHH---HHHH
Q 009782 276 LVEAFDIFRGMILNGFDPDPV----------AISSILA----NASLLRIGAQVHGWVLRRGVEWDLCIANSLI---VVYS 338 (526)
Q Consensus 276 ~~~a~~~~~~m~~~~~~p~~~----------~~~~ll~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~ 338 (526)
...|.+.+.-+.-- .|+.. ++-.++. .+.+...-..+++.+...++....-+ .-++ .-+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv-h~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV-HYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHHHHH
Confidence 98888888776543 33332 1111111 11344455555655555554432211 1121 2223
Q ss_pred hcCC-hHHHHHHhccCCC---CChhHHHHHHHh----cCC------chHHHHHHHHHHHCCCCCCHH----HHHHHHHH-
Q 009782 339 KDGK-LDQACWLFDHMPQ---KDVVSWNSIIHA----HSK------DHEALIYFEQMERDGVLPDHL----TFVSLLSA- 399 (526)
Q Consensus 339 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~----~~~------~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~- 399 (526)
+.|. -++|.++++.+.+ -|...-|.+..- |.+ ...-..+-+-+.+.|+.|-.. .-|.|.+|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3333 5666666665543 233222222211 110 022223333333445544322 23333333
Q ss_pred -HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 400 -CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 400 -~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
+..+|++.++.-+-.-+. .+.|++.+|..++-++....++++|.+++ ..+
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l-~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYL-QKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHH-HhC
Confidence 234555555554433333 35566666666665556666666666666 444
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.21 E-value=0.00071 Score=41.47 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
.++..+...|...|++++|++.++++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788889999999999999999999999999988877764
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.0005 Score=48.67 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFEL----EPD---NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777753 222 244678888888999999999888887654
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0058 Score=51.17 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCCcccHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh-------------------hhhHHHH
Q 009782 257 NKDLISYNSMLTGYIH-----HGLLVEAFDIFRGMILNGFDPDPVAISSILANA-------------------SLLRIGA 312 (526)
Q Consensus 257 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------------------~~~~~a~ 312 (526)
..|..+|..++..|.+ .|+.+-....++.|.+-|+.-|..+|+.+|..+ .+-+-+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666654 366777777788888888888888888888765 3456777
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (526)
.++++|...|+.||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888887765544
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.12 E-value=0.037 Score=44.97 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=80.7
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC---CcccHH
Q 009782 87 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA---FAFPWN 163 (526)
Q Consensus 87 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 163 (526)
.-|+...--.+..++.+.|+..+|...|++....-+-.|......+.++....+++..|...++.+-+-+| ++.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555566677777777777777777777665666776666777777777777777777776654433 224455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 164 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
.+...+...|++.+|...|+..... -|+...-..-...+.++|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 5666677777777777777777663 344443333334445556555554433
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.10 E-value=0.042 Score=48.64 Aligned_cols=150 Identities=9% Similarity=0.100 Sum_probs=89.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH--hc---
Q 009782 369 SKDHEALIYFEQMERDGVLPDHL----TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG--RA--- 439 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~--- 439 (526)
|++++|.+.|+++... .|+.. ..-.+..++.+.++++.|...+++..+.+.-.|+.. +...+.+++ ..
T Consensus 46 g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 46 GNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGLTNMALDDS 122 (243)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHHhhhhcchh
Confidence 4444455555555442 22221 123455666777777777777777776544444332 112222221 11
Q ss_pred ------------CC---hHHHHHHHHhhcCCCCCHHH------------------HHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 440 ------------GL---IDEAYSMIVEKMEFEASPVV------------------WGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 440 ------------g~---~~~A~~~~~~~~~~~p~~~~------------------~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
.+ ..+|.+.|.+.+..-|+... --.+..-|.+.|++..|..-++.++
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 11 23455555455554554311 0123355888999999999999999
Q ss_pred ccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 487 ELEPDNE---HNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 487 ~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..|+.+ .+...++.+|...|..++|.+....+..
T Consensus 203 ~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 203 RDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9887754 4577888999999999999998776643
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.09 E-value=0.017 Score=44.37 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=44.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHh
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPD--QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG--FDGFVLNALVDMYAK 241 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~ 241 (526)
..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444555666666666666666554333 123444455555666666666666655543211 011111222234455
Q ss_pred cCCHHHHHHHHhhcC
Q 009782 242 CGDIVKARTVFDRIG 256 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~ 256 (526)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554433
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.06 E-value=0.031 Score=42.56 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
+....+..+.....+|+-+.-.+++..+.+.+..++.....++.+|.+.|+..++.+++.+.-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44555666778888999999999999988766667888999999999999999999999999999974
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.014 Score=53.63 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=95.9
Q ss_pred HHhccCCHHHHHHHHHHHHHhcC----CC---------CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYG----IS---------PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGA 464 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~----~~---------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 464 (526)
.+.+.|++..|..-|+++..-.. .+ .-..++..|.-+|.+.+++..|+....+.+...|+. ..+-.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 45666777777776666543211 11 123466778888999999999999998888888854 77777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHhC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDR 522 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~ 522 (526)
-..++...|+++.|+..|+++++++|.|..+-..|+.+--+..++.+. .++|..|...
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999999999999999988888888888777776665 7788888654
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.02 E-value=0.086 Score=51.35 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=53.2
Q ss_pred CCCccccccCCCCchHHHHHHHHHHH---------HHHhhCCCCCChhhHHHHHHHHHccCChHHHH--HHHHHHhhhcc
Q 009782 54 PTPLLTNQKAFPKTKLQALDSIIQDL---------ESSVQNGITVQTETFASLLETCYQLKAVEHGI--KLHRLIPTNLL 122 (526)
Q Consensus 54 p~~~~~~~~~~~~~~~~~~~~a~~~~---------~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~ 122 (526)
|.+..+..-+..+...|.+++|.++- +.+... ..+.-.++..=++|.+.++..--. --++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444455555566777777776431 111111 012334555556666666644332 23456667776
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhccc
Q 009782 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153 (526)
Q Consensus 123 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 153 (526)
.|+... +...++-.|++.+|-++|.+-.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcC
Confidence 677643 3455667789999999887653
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.01 E-value=0.0055 Score=57.54 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhhcCC
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV----EHYACMVNLYGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (526)
+...++.+..+|.+.|++++|...|++..+ +.|+. ..|..+..+|...|+.++|++.+.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999885 56763 35899999999999999999999888875
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.0037 Score=50.65 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++|+++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455667778889999999999999999999999999999999999999999999998874
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.98 E-value=0.32 Score=45.53 Aligned_cols=130 Identities=14% Similarity=0.203 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHH-HHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYG-ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW-GALLY 467 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~ 467 (526)
...|...+.+..+...++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-.+...||...| .-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677777777888888999999998877 6 6678888888888665 577888899997777777877555 55666
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDN--EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+..-++-+.|..+|+...+.-.++ ..+|..++.--..-|+...|..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778888888988888766532222 34588888888888888777766666543
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.21 Score=43.25 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=91.4
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc----CCCCchhHHHHHHHHHHhcCCh
Q 009782 367 AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY----GISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 367 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
+++.+.-.+..+++.++...+-++.....|.+.-.+.||.+.|..+|+...+.. ++.-+..........|.-.+++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 355666677888888887666677888889999999999999999999766541 2233333334444556677889
Q ss_pred HHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 443 DEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
..|...+.+.+..+|.. ...|.-.-...-.|+..+|++.++.+++..|...
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99998886666666643 4444444455567899999999999999998843
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.48 Score=47.36 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=85.4
Q ss_pred hCCCCCChhhHHH-----HHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC---ChhHHHHHHhccccC
Q 009782 84 QNGITVQTETFAS-----LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG---LIDEAHQVFDQMSNR 155 (526)
Q Consensus 84 ~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~ 155 (526)
.-|++.+..-|.. ++..+...+.+..|.++-..+...-... ..++.....-+.+.. +.+.+..+=+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4477777666654 5666777888999998887775432222 567777777777653 233334444444443
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG----VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 156 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
-....+|..+.......|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+....++-.+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2233788888888888999999988876432221 111233355556666677777777776666554
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.0082 Score=54.87 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHh---cCC-CCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-------CCCCHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEK---YGI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-------FEASPV 460 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~ 460 (526)
.+..+..++.-.|+++.|.+.++..... .|- .....+..+|...|.-...+++|+.++.+-+. ......
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5566667777777777777777654321 011 12345566777777777778888877744331 112335
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.+-+|..++...|..+.|+.+.+..++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666777888888888888777776655
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.28 Score=43.47 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCcc----cHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGN--KDLI----SYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
....+...|++++|.+.|+.+.. |+.. ..-.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444566777777777766654 2221 1133455666677777777777766664
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.17 Score=43.74 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=103.1
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH-----
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL----- 235 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l----- 235 (526)
+-+.++..+.-.|.+.-..+++.+..+...+.+......+++...+.||.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 356677777778889889999999988766667777888888888999999999999987765434444444433
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 236 VDMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
...|.-.+++..|...|+++... |+..-|.-.-+..-.|+..+|++.++.|+.. .|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34566778889999999888764 4455666666677788999999999999875 4555444433
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0025 Score=45.07 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC----C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME----F---EAS-PVVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
.+|+.+...|...|++++|++.|.+.+. . .|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566666777777777777777655441 1 122 256677777777777777777777776653
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.80 E-value=0.051 Score=46.77 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHH-
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACY- 470 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~- 470 (526)
...+...|++.+|.+.|+.+...+...| -....-.++.++.+.|++++|...+.+-+...|+. ..+-.++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566888888888888877643333 23444566777788888888888775555444433 12222222211
Q ss_pred ----------hcCChHHHHHHHHHHHccCCCCcchH-----------------HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 471 ----------LHGNVCMGETAAQKLFELEPDNEHNF-----------------ELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 471 ----------~~g~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..+....|...++.+++..|+++.+- ..+++.|.+.|.+..|..-++.+.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 12234577888888888888876542 23578899999999999888887653
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.76 E-value=0.034 Score=52.50 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhcc---------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 009782 372 HEALIYFEQMER-DGVLPDHL-TFVSLLSACAHL---------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440 (526)
Q Consensus 372 ~~a~~~~~~m~~-~~~~p~~~-~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 440 (526)
+.|+.+|.+... +.+.|+.. .|..+..++... .+..+|.+.-+...+. -+-|......+..++.-.+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhc
Confidence 568888998872 33677654 566666555432 2345666666666652 2337788888888888888
Q ss_pred ChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch--HHHHHHHHHhcCChHHHHHHHH
Q 009782 441 LIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN--FELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
+++.|..+|+++...+|+. .+|......+.-.|+.++|.+.+++++++.|....+ ....+..|+. ...++|.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence 8999999999999999976 777777777888999999999999999999985443 3334445655 45677777765
Q ss_pred H
Q 009782 518 M 518 (526)
Q Consensus 518 ~ 518 (526)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 4
No 222
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.75 E-value=0.82 Score=46.81 Aligned_cols=265 Identities=12% Similarity=0.046 Sum_probs=142.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ 313 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~ 313 (526)
..+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|-.. .+.+..
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~--------------p~~cd~ 168 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL--------------PNACDK 168 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--------------ChHHHH
Confidence 3444555667777777633222 2344445566667777777777766666665544221 122333
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH-
Q 009782 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT- 392 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~- 392 (526)
+++...+.|.-.+..++.- +......|+...|..+...+..........++....+...+..++.. +.|+...
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~ 242 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTR 242 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhH
Confidence 4444444444333333332 44555667777777777666322222334444444555444443332 2223211
Q ss_pred --HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009782 393 --FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV--EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468 (526)
Q Consensus 393 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 468 (526)
....+.-+ ...+.+.|...+.......++.+.. ..+..+.......+...+|...+........+......-+..
T Consensus 243 ~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~ 321 (644)
T PRK11619 243 QMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRM 321 (644)
T ss_pred HHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHH
Confidence 11222222 2346688888888775543444432 233444444444433566777773333333344455555556
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
....++++.+...+..+-........-..=+++++...|+.++|...|+++.
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5678888877777776543222334446677888777888888888888764
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.23 Score=46.29 Aligned_cols=158 Identities=18% Similarity=0.103 Sum_probs=98.7
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCC-Ch--h-------HHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQK-DV--V-------SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~-------~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 398 (526)
.++-.|....+++...++++.+... +. . .|..-+.- -|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888887753 11 0 12222222 3666888888888766667778888887777
Q ss_pred HHhc---------cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH----HHH---Hhhc------CCC
Q 009782 399 ACAH---------LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY----SMI---VEKM------EFE 456 (526)
Q Consensus 399 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~---~~~~------~~~ 456 (526)
.|-. ....++|...|.+.. .+.||..+=-.++..+...|...+.. ++- ...+ +..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6632 224677777777765 34565444333444444444322221 111 1111 223
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 457 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
.+-..+.+++.++.-.|+.+.|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344677888899999999999999999999988773
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.027 Score=50.25 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=111.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH----HHHHHHHH
Q 009782 362 NSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY----ACMVNLYG 437 (526)
Q Consensus 362 ~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~ 437 (526)
.+++-+-|+..+|-..++++.+. .+-|...+...=++|...|+.+.-...++++... -.||...| ..+.-++.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHH
Confidence 34555678888888888888774 4556677777888888888888888888887652 35555433 34445567
Q ss_pred hcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChHHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 512 (526)
.+|-+++|.+.-.+++.++| |...-.++...+.-.|+..++.+++++--..-.. -...|-...-.+...+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 88999999998888888888 4477788888888888898888887764332111 123466666777778899999
Q ss_pred HHHHHHH
Q 009782 513 ERVERML 519 (526)
Q Consensus 513 ~~~~~~m 519 (526)
.++|++=
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 9988764
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.65 E-value=0.071 Score=41.84 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=53.3
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--HHHHHHHHHH--HhcCC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYAC--YLHGN 474 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~--~~~g~ 474 (526)
..+.|++++|.+.|+.+..++-..| ....--.|+.+|.+.|++++|...+.+-+...|+. .-|-..+.++ .....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 4455777777777777766544333 23444556677777777777777775555555533 2222222222 22221
Q ss_pred ---------------hHHHHHHHHHHHccCCCCcc
Q 009782 475 ---------------VCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 475 ---------------~~~a~~~~~~~~~~~p~~~~ 494 (526)
...|...|+++++..|++..
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 45666666666666666543
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.65 E-value=0.021 Score=43.36 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcC
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----VVWGALLYACYLHG 473 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g 473 (526)
+....|+.+.|++.|.+.... .+.....||.-.+++.-.|+.++|++-+.+++....+. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345556666666666666531 23355666666666666666666666665555332211 22333333455666
Q ss_pred ChHHHHHHHHHHHccCCC
Q 009782 474 NVCMGETAAQKLFELEPD 491 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~ 491 (526)
+.+.|..-|+.+-++..+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 666666666666555543
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0098 Score=54.59 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=75.5
Q ss_pred HHHHHhcCChHHHHHHHHhhcC-------CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 433 VNLYGRAGLIDEAYSMIVEKME-------FEA---------SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~-------~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
.+.|.+.|++..|...|.+++. ..+ -..++..+.-.+.+.+++..|++...++++++|+|..+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 4567788888888888744441 111 224567788889999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..-+.+|...|+++.|+..|+++.+..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999997643
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.56 E-value=0.16 Score=48.20 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=92.6
Q ss_pred ChHHHHHHhccCC---CCC---hhHHHHHHHh------cCCc------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 009782 342 KLDQACWLFDHMP---QKD---VVSWNSIIHA------HSKD------HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403 (526)
Q Consensus 342 ~~~~A~~~~~~~~---~~~---~~~~~~li~~------~~~~------~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 403 (526)
..+.|..+|.+.. +-| ...|..+-.+ +|.. .+|.++-+...+.+ .-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898877 433 2333333222 2222 34667777777643 23566777777777777
Q ss_pred CCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~ 479 (526)
++.+.|...|+++. .+.|| ...|........-+|+.++|.+.+.+++..+|.. ......+..|+. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 88999999999997 46775 5566666666777899999999998889999965 333444445554 3467777
Q ss_pred HHHHHHH
Q 009782 480 TAAQKLF 486 (526)
Q Consensus 480 ~~~~~~~ 486 (526)
++|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7766533
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.55 E-value=0.069 Score=41.91 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=65.1
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch-HHHHHHH--HH
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN-FELLIKI--YG 504 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~--~~ 504 (526)
-.....+.|++++|.+.|++....-| ....-..++.+|.+.|++++|...+++.+++.|.++.+ |.....+ +.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34555688999999999944444444 23666778999999999999999999999999987653 3333444 44
Q ss_pred hcCC---------------hHHHHHHHHHHHhC
Q 009782 505 NAGR---------------LDDVERVERMLVDR 522 (526)
Q Consensus 505 ~~g~---------------~~~A~~~~~~m~~~ 522 (526)
+... ..+|..-|++++++
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 4443 56677777776643
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=1 Score=44.78 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC---cccHHHHHHHHHhcCChHHHHH
Q 009782 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF---AFPWNSLISGYAELGEYEDAIA 180 (526)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 180 (526)
-|++++|.++|-++.++. .-+..+.+.|++-...++++.-.....+ ..+|+.+...+.....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887776655432 2355556667777666666553322211 1446666655555555555555
Q ss_pred HHHH
Q 009782 181 LYFQ 184 (526)
Q Consensus 181 ~~~~ 184 (526)
.|..
T Consensus 818 yY~~ 821 (1189)
T KOG2041|consen 818 YYSY 821 (1189)
T ss_pred HHHh
Confidence 5543
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.47 E-value=0.71 Score=42.57 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=153.2
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhH--HHHH
Q 009782 162 WNSLISGYAE--LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC--AGLGLIRVGEKVHLDAVRFGFGFDGFV--LNAL 235 (526)
Q Consensus 162 ~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l 235 (526)
|..|-.+++- .|+-..|.++-.+-.+. +.-|......++.+- .-.|+.+.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555555544 35555555555443321 233444444444433 2457777777777777642 22221 1222
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHH--HHHHHHHh----
Q 009782 236 VDMYAKCGDIVKARTVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVA--ISSILANA---- 305 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~--~~~ll~~~---- 305 (526)
.-.--+.|+.+.|..+-++.-. | -...+...+...+..|+|+.|+++++.-... -+.++..- -..++.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 2233456777777776665543 2 2245677778888888888888888766554 23444432 22333322
Q ss_pred --hhhHHHHHHHHHHHHhCCCCchhHH-hHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhcCCchHHHHHHHH
Q 009782 306 --SLLRIGAQVHGWVLRRGVEWDLCIA-NSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFEQ 380 (526)
Q Consensus 306 --~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~a~~~~~~ 380 (526)
.+...+...-.+..+ +.|+..-- -.-..++.+.|+..++-.+++.+.+ |....+...+.+-+ .+-++.-++.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~-gdta~dRlkR 317 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARS-GDTALDRLKR 317 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcC-CCcHHHHHHH
Confidence 233334333333332 33433222 2235778888999988888888775 44444444444311 1222332322
Q ss_pred HHH-CCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHHHHHHHhhcC
Q 009782 381 MER-DGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-AGLIDEAYSMIVEKME 454 (526)
Q Consensus 381 m~~-~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 454 (526)
... ..++||. .+...+.++....|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+.+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222 1245544 356666677777777777776655554 356777777777665543 4777777777766663
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.031 Score=48.77 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGAL 465 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l 465 (526)
..|+..+..+ +.|++..|...|....+.|.-.+ ....+-.|.+++...|++++|..+|....+..|+ +..+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3677777654 55779999999999988532211 3455667899999999999999999665544442 3677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
.....+.|+.++|...|+++.+-.|+.+.+-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888899999999999999999999876643
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.37 E-value=0.051 Score=42.21 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=74.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 405 (526)
|..++.+++.++++.|+.+....+++..-..++.. ...... --......|+..+..+++.+|+..|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~ 67 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGD 67 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc------cCCCCCCCCCHHHHHHHHHHHHhccc
Confidence 34577889999999999999998887654321100 000000 01134578999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 437 (526)
+..|.++++...+.|+++-+..+|..|++-..
T Consensus 68 i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 68 IFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999998889999998887543
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.085 Score=46.14 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=49.5
Q ss_pred hcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChH
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~ 510 (526)
+.|++.+|...|.+-+..-|+. ..+--|+.++...|++++|...|..+.+-.|++ +.++.-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 4555666666665544444432 334445666666666666666666666654443 334555666666666666
Q ss_pred HHHHHHHHHHh
Q 009782 511 DVERVERMLVD 521 (526)
Q Consensus 511 ~A~~~~~~m~~ 521 (526)
+|...|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.31 E-value=0.99 Score=42.47 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHH
Q 009782 372 HEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 372 ~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~ 449 (526)
+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... -||...| ...+..+.+.++-+.|..+|
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 44666666666666 55667777777776654 6777778887776653 2343333 45566667777777788777
Q ss_pred HhhcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 450 VEKME-FEAS--PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 450 ~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+..+. +..+ ...|..++.--..-|+...+..+-+++.++.|.
T Consensus 490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 54442 1122 367777777777777777777776776666654
No 236
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.031 Score=45.99 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=68.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACY 470 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 470 (526)
..-+.+.|++++|..-|..+.+. +++. ...|..-.-++.+.+.++.|++-..+++.+.|.. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34456678888888888887763 4443 2234444456677788888888777777777754 44444455677
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
+..++++|+.-|+++++..|....+-...++.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 77788888888888888888765544444443
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.27 E-value=0.14 Score=44.15 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHH-----------hcCChHHHHHHHHhhcCCCCCH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYG-----------RAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
....++.++.+.|+++.|...++...+.+.-.|.. ..+-.++.++. ..+...+|...|.+.+..-|+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 45566777788888888888888887765444432 11111122211 1223446666665555444543
Q ss_pred HH------------------HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChHHHHH
Q 009782 460 VV------------------WGALLYACYLHGNVCMGETAAQKLFELEPDNEH---NFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 460 ~~------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 514 (526)
.- --.+...|.+.|.+..|...++.+++..|+... +...++.+|.+.|..+.|..
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 10 012345688999999999999999999998654 46778999999999986543
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.47 Score=43.17 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=55.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccC
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP--DHLTFVSLLSACAHLG 404 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~ 404 (526)
..++-.|...|.+..++++|.-+..+.. ++.+...-.++.. -....-.+.-++...|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~---------------------~lv~s~~l~d~~~kyr~~~lyhmaValR~~G 220 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAA---------------------ELVNSYGLKDWSLKYRAMSLYHMAVALRLLG 220 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHH---------------------HHHHhcCcCchhHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888888888766554322 1111110000000 0011122333455556
Q ss_pred CHHHHHHHHHHHHHhc---CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 405 SVKVGERLFSVMVEKY---GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
....|.+.-++..+.. |-.+ .......+.+.|...|+.+.|..-|+++|+
T Consensus 221 ~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 221 RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 6666666655554321 2222 233345667777778888888777766664
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.20 E-value=0.96 Score=42.34 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccccCCC-C----cccHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCcchHH
Q 009782 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTA-F----AFPWNSLISGYAE---LGEYEDAIALYFQMEEEGVEPDQFTFP 198 (526)
Q Consensus 127 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~ 198 (526)
.+...++-.|-...+++...++.+.+..... + +..-....-++.+ .|+.++|++++..+....-.++..||.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444556668888999999999999876621 1 1122234455566 899999999999976666788889999
Q ss_pred HHHHHHhcc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH----HHHHHH---hh-cC-----
Q 009782 199 RVLKACAGL---------GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV----KARTVF---DR-IG----- 256 (526)
Q Consensus 199 ~ll~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~~----- 256 (526)
.+.+.|... ..+++|...|.+.-+. .||...--.++..+...|... +..++- .. ..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 988877521 2356677666655443 344332222222233333311 222222 11 10
Q ss_pred --CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 257 --NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 257 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..|-..+.+++.+..-.|+.++|.+..++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 123345667778888888888888888888765
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.10 E-value=1.6 Score=42.84 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=117.4
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChh------HHHHHHHhcCCchHHHHHHHHHHHCCC--CCCHHHHHHH
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV------SWNSIIHAHSKDHEALIYFEQMERDGV--LPDHLTFVSL 396 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 396 (526)
++..+|+..++.-.+.|+.+.+.-+|+...-|-.. -|.-.+...|+.+-|..++..-.+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888889999999999999877654221 233344445666666666655444222 2333333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhcCChHHHH---HHHHhhcCCCCCHHHHHHHH----H-
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYGRAGLIDEAY---SMIVEKMEFEASPVVWGALL----Y- 467 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l~----~- 467 (526)
+ +-..|+.+.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. +++.......-+..+...+. +
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 34568999999999999885 4 553 23233455567888888888 55533333233333333332 2
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
.+.-.++.+.|..++.++.+..|++...|..++......+..
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 234578999999999999999999998899888887766633
No 241
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=1.9 Score=43.65 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChh
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 359 (526)
...|+..|...++++.|+.++-...++++.
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 345889999999999999999988876554
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.3 Score=43.84 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=81.1
Q ss_pred cCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHhccCCHHHH
Q 009782 340 DGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL--TF--VSLLSACAHLGSVKVG 409 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~--~~--~~ll~~~~~~~~~~~a 409 (526)
.|+.-+|...++++.+ .|...+.-.-.+ .|+.+.-...++++... ..||.. +| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 233333322222 25555555555555542 233332 22 2233334466777777
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HH--HHHHHHHHHhcCChHHHHHHH
Q 009782 410 ERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VV--WGALLYACYLHGNVCMGETAA 482 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~--~~~l~~~~~~~g~~~~a~~~~ 482 (526)
++.-++..+ +.+ |.-...+....+--.|++.++.++. ..-.-.-+. .. |-...-.+...+.++.|+++|
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM-~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFM-YKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHH-HhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 776666653 333 4455556666666777777777766 222111111 11 111112233456777777777
Q ss_pred HHHH--ccCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 009782 483 QKLF--ELEPDNEHNFE---LLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 483 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 516 (526)
++-. +++.+|..+.. .+-.+..+...|.+..++-
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 5532 35566554322 2333344444444444333
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.46 Score=42.13 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=58.2
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhcCChH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA---LLYACYLHGNVC 476 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 476 (526)
....|+..+|...|+..... .+-+...--.|..+|...|+.+.|..++ ..+...-...-+.. -+..+.+..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAIL-AALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556666666666666543 2223444455666666666666666666 55433322222222 122222222222
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+. ..+++-+.-+|+|...-..+...|...|+.++|.+.+=.+.
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 12233344556666666666666666666666665544443
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.31 Score=47.27 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 69 LQALDSIIQDLE-SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 69 ~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
.++++++.+.++ .-.-. ..+....+.++.-+-+.|-++.|+++.. |+ ..-.....++|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHH
Confidence 455666555543 11111 1235557777777788888888887543 32 233455677888888888
Q ss_pred HHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 227 (526)
+.++... +..|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+...++.+.....|-
T Consensus 340 ~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 8776652 26788999999999999998888888653 56666677778888888777777776651
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 228 DGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+|....++.-.|+.++..+++.+.
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555556667777777766554
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=95.69 E-value=0.25 Score=39.81 Aligned_cols=91 Identities=7% Similarity=-0.040 Sum_probs=64.4
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 477 (526)
.+...|++++|..+|+-+..- + .-+..-+..|..++-..+++++|+..|.-+.-..+ |+..+-.....+...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345678999999998888753 1 22555667788888888889999888844443333 34445556778888899999
Q ss_pred HHHHHHHHHccCCCC
Q 009782 478 GETAAQKLFELEPDN 492 (526)
Q Consensus 478 a~~~~~~~~~~~p~~ 492 (526)
|...|+.+.+ .|.+
T Consensus 124 A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 124 ARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHh-Ccch
Confidence 9888888877 3443
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.64 E-value=0.068 Score=43.20 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH-------HhhcCCCCCHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-------VEKMEFEASPV 460 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~~p~~~ 460 (526)
....++..+...|+++.|..+.+.+... -+-+...|..+|.+|...|+..+|.+.| .+.+|..|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4455666666777777777777777753 3336677777777777777777777776 22336666653
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.61 E-value=0.032 Score=31.57 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
.+..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777654
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.48 E-value=0.32 Score=40.31 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
..-+.+.|++++|..-|.+++..-|.. ..|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 344567888888888887777665543 34444555677888888888888888888888777777778888888
Q ss_pred CChHHHHHHHHHHHhCC
Q 009782 507 GRLDDVERVERMLVDRG 523 (526)
Q Consensus 507 g~~~~A~~~~~~m~~~g 523 (526)
.++++|++-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888877654
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.45 E-value=1.2 Score=38.79 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=64.7
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---CH--HHHHHHHHHHHh---
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---SP--VVWGALLYACYL--- 471 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~--~~~~~l~~~~~~--- 471 (526)
.+.|++++|...|+.+..++...| ...+.-.++.++.+.+++++|+..+.+-+...| +. ..|...+.-+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 345677777777777766544444 344445556666677777777666644443333 32 222222222211
Q ss_pred -cCC---hHHHHHHHHHHHccCCCCcch-----------------HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 472 -HGN---VCMGETAAQKLFELEPDNEHN-----------------FELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 472 -~g~---~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..| ...|...++.++...|++..+ =...++-|.+.|.+..|..-+++|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 112 234445555555666665432 113456677777777777777776654
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.45 E-value=0.028 Score=31.89 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+|..++..+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566667777777777777777777777765
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.44 E-value=1 Score=35.90 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcC
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 173 (526)
...++..+...+.+......++.+...+ ..+...++.++..|++.+ ..+..+.++. . .+......++..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcC
Confidence 4455666666666777777777776665 356667777777777653 3344444442 1 11133344566666666
Q ss_pred ChHHHHHHHHHH
Q 009782 174 EYEDAIALYFQM 185 (526)
Q Consensus 174 ~~~~a~~~~~~m 185 (526)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666555554
No 252
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=3.5 Score=41.66 Aligned_cols=326 Identities=12% Similarity=0.060 Sum_probs=185.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL--IRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 240 (526)
..+|+-+...+.+..|+.+-..+...-..- ...|.....-+.+..+ -+.+.+.+++=.+... .+...|..+.....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 456777888888888888877765322121 4566666666655432 2233333322222222 34456777777777
Q ss_pred hcCCHHHHHHHHhhcCCC--------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHH
Q 009782 241 KCGDIVKARTVFDRIGNK--------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312 (526)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~ 312 (526)
.+|+.+-|.++++.=+.. +..-+..-+.-....|+.+-...++-.+... - +-+.+.....+.-.|.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~---~~s~l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---L---NRSSLFMTLRNQPLAL 592 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---H---HHHHHHHHHHhchhhh
Confidence 889999999888764432 2234455566667777777777777666553 1 1112222223334444
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHh-ccC------CC--CChhH-HHHHHHh---------cCCchH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHM------PQ--KDVVS-WNSIIHA---------HSKDHE 373 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~------~~--~~~~~-~~~li~~---------~~~~~~ 373 (526)
.++....+..-. ..+-+.|-...+...+-.+. +.. .. |+..+ ++..-.. +.+..+
T Consensus 593 ~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 593 SLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 444444432111 01112222222222111111 110 00 11111 1111111 111122
Q ss_pred HHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 374 ALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 374 a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||...|..=+.+++..++|++-+++- +.
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA-ks 740 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA-KS 740 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH-hc
Confidence 3333333332 2333344456666677778899999998866653 478888888899999999999988776 44
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 453 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+ .+.-|..+..+|.+.|+.++|.+++-+.-. +...+.+|.+.|++.+|.++--+-
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 33 255677889999999999999888765322 236789999999999998875443
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.35 E-value=0.24 Score=38.51 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=54.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh--hcCCCCcccHHHHHHHH
Q 009782 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD--RIGNKDLISYNSMLTGY 270 (526)
Q Consensus 193 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~ 270 (526)
|..++..++.++++.|+++....+++.. -|+.++... ..+. +. .-..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 3456667777777777777666666432 122222110 0000 10 01126667778888888
Q ss_pred HhCCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHH
Q 009782 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAISSILAN 304 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~ 304 (526)
+..|++..|+++++...+. +++.+..++..++.-
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8888888888888877664 666566666555543
No 254
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.33 E-value=2.4 Score=39.28 Aligned_cols=82 Identities=18% Similarity=0.046 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 467 (526)
|+..-|..-+.+++..+++++-.++-.. +-.+..|..++.+|.+.|+..+|..++ ..+. +..-+.
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~~~eA~~yI-~k~~-------~~~rv~ 270 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGNKKEASKYI-PKIP-------DEERVE 270 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCCHHHHHHHH-HhCC-------hHHHHH
Confidence 6777888888999999998877765322 124577888888888999988888888 4322 244566
Q ss_pred HHHhcCChHHHHHHHHH
Q 009782 468 ACYLHGNVCMGETAAQK 484 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~ 484 (526)
.|.+.|++.+|.+..-+
T Consensus 271 ~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 271 MYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888888888766443
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=1.7 Score=37.51 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=90.7
Q ss_pred cCCchHHHHHHHHHHH---CCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHh
Q 009782 368 HSKDHEALIYFEQMER---DGVLPDHLT--FVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGR 438 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~---~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~ 438 (526)
..+..++..++++... ..-.|+... ..-..+ .....+++.|++++++........- -...+....+.|.+
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 4445555555555322 122344332 222222 2345678888888887765311111 13455667778888
Q ss_pred cCChHHHHHHHHhhcC------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCCCcchHHHHHHHHHhcC
Q 009782 439 AGLIDEAYSMIVEKME------FEASP-VVWGALLYACYLHGNVCMGETAAQKLFE----LEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g 507 (526)
..++++|-..+.+..+ .-|+. ..+...|-.+....|+..|+..++.--+ ..|.+..+...|+.+|- .|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cC
Confidence 8888888777744432 23333 4566666677778899999999988655 34667778888988874 57
Q ss_pred ChHHHHHHH
Q 009782 508 RLDDVERVE 516 (526)
Q Consensus 508 ~~~~A~~~~ 516 (526)
+.+++.+++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 888877664
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.77 Score=39.47 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 170 (526)
...|.....+|....++++|..-+.+..+. .+.+...|.+ ..-.+.|.-+.+++...+--..-|+--...|.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455667777788888888888866665532 2333332222 22345555555555444332344666677788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhcCCH
Q 009782 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-----GFDGFVLNALVDMYAKCGDI 245 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~~ 245 (526)
.+|..+.|-..+++.-+. ....+++.|+++|++....-. ..-...+...-..+++...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 888877777666654331 122344555555554432110 11122344455566677777
Q ss_pred HHHHHHHhhcCC--------CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCcHHHHHHHHHHh--hhhHHH
Q 009782 246 VKARTVFDRIGN--------KDL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSILANA--SLLRIG 311 (526)
Q Consensus 246 ~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~--~~~~~a 311 (526)
++|-..|.+-.. ++. ..|-..|-.+.-..++..|.+.+++--+.+ -.-+..+...+|.++ |+.+.+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 777666554332 111 234455556666778888888887754432 122344566666666 555555
Q ss_pred HHHH
Q 009782 312 AQVH 315 (526)
Q Consensus 312 ~~~~ 315 (526)
..+.
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 4443
No 257
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.56 Score=45.70 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 415 (526)
...-.|+++.|..++..+.++.......++...+-.++|++ +.+|...- .....+.|+++.|.++..+
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~---------~s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALE---------LSTDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred HHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhh---------cCCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 34456788888887777776554444455555555555554 33443322 2223567888888877655
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 416 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.. +..-|..|.++..+.|++..|.+.|.++.. |..|+-.+...|+.+....+.....+....
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 43 456788888888888998888888855553 455666666667666544444444443333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 009782 496 FELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+...-+|...|+++++.+++..
T Consensus 725 -N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -chHHHHHHHcCCHHHHHHHHHh
Confidence 3334566667777777766544
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.03 E-value=0.14 Score=45.55 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.++..++..+...|+.+.+.+.+.+.+...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444455555555555555555544444444 335555555555555555555555555443
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.99 E-value=0.8 Score=41.76 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc------CCCCCH--
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM------EFEASP-- 459 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~~-- 459 (526)
...++..++...+.++++++.|+.+..-..-.. ....+..|...|.+..++++|.-+..++. +.+--.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 344566677777788888888887765311111 24567788888888888888765553333 222211
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHcc--CCCCc----chHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 460 ---VVWGALLYACYLHGNVCMGETAAQKLFEL--EPDNE----HNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 460 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.....+..++...|....|.+.-+++.++ .-.|. .....++++|...|+.+.|..-|++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22334455677788888888877777653 22222 33456788888888888877666553
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.84 E-value=0.55 Score=46.21 Aligned_cols=148 Identities=12% Similarity=0.103 Sum_probs=86.1
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----------ccCCHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA----------HLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLY 436 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~ 436 (526)
-|+.+.+++++.+-.+.+---.+..-..|+..+. ...+.+.+.++++.+.++ -|+...|. .-.+.+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEGRLE 277 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 4677778888777655221112222222332221 234667788888888764 46655543 334556
Q ss_pred HhcCChHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH-HHHHHhcCChH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEAS-----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL-IKIYGNAGRLD 510 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~ 510 (526)
...|++++|++.|.+.+..... ...+--+...+...+++++|...+.++.+...-+...|..+ +.+|...|+.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence 6788888888888655532221 13344455667778888888888888888665544444433 34455667665
Q ss_pred HHHHHHHH
Q 009782 511 DVERVERM 518 (526)
Q Consensus 511 ~A~~~~~~ 518 (526)
.+.+.-++
T Consensus 358 ~~~~~~~~ 365 (468)
T PF10300_consen 358 EAKEHKKE 365 (468)
T ss_pred hhhhhHHH
Confidence 55444443
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.83 E-value=0.31 Score=40.93 Aligned_cols=150 Identities=18% Similarity=0.112 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 446 (526)
|-..-|.-=|.+... +.|+.. .||-|.-.+...|+++.|.+.|+...+ +.|. ..+...-.-++.--|++.-|.
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCchHhhH
Confidence 333444444454444 778754 788888888899999999999999875 4553 122211122333568888887
Q ss_pred HHHHhhcCCCCCH---HHHHHH--------------HHHHHhcCChH-------------HHHHHHHHHHccCCCC----
Q 009782 447 SMIVEKMEFEASP---VVWGAL--------------LYACYLHGNVC-------------MGETAAQKLFELEPDN---- 492 (526)
Q Consensus 447 ~~~~~~~~~~p~~---~~~~~l--------------~~~~~~~g~~~-------------~a~~~~~~~~~~~p~~---- 492 (526)
+-+.+--..+|+. ..|--+ ...+....+-. ..+.+++++..-..++
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~A 233 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLA 233 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHH
Confidence 7663333333322 222222 22222221110 0112233333322222
Q ss_pred ---cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 493 ---EHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 493 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..+|..|++-|...|+.++|..+|+-....+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3468889999999999999999998776544
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.80 E-value=2.9 Score=41.32 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=93.6
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCC-CCh---------hHHHHHHHh-cCC------chHHHHHHHHHHHCCCCCCHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQ-KDV---------VSWNSIIHA-HSK------DHEALIYFEQMERDGVLPDHL 391 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~li~~-~~~------~~~a~~~~~~m~~~~~~p~~~ 391 (526)
.+..++....-.|+-+.+++.+.+..+ .+. ..|...+.. ++. .+.|.++++.+.+ .-|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 345677777788999999998887665 222 234444443 232 1568999999887 467776
Q ss_pred HHHHH-HHHHhccCCHHHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 392 TFVSL-LSACAHLGSVKVGERLFSVMVEKY-GIS-PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 392 ~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
.|... .+.+...|++++|.+.|+...... ..+ .....+--++..+.-.++|++|.+.|.+....+.-. .+|.-+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 344567899999999999765420 111 123445566777888999999999996666555544 44444444
Q ss_pred H-HHhcCCh
Q 009782 468 A-CYLHGNV 475 (526)
Q Consensus 468 ~-~~~~g~~ 475 (526)
+ +...|+.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 3 3456766
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.75 E-value=1.4 Score=35.44 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=62.4
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 477 (526)
.-...++.+.+..++..+. -+.|..... ..-...+.+.|+|.+|..++.+.....|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456778888888888886 456643332 233455678889999999995555555555555666665554333222
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
=..+.+++++..++ +. -..+++.+....+...|
T Consensus 96 Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PD-ARALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccch
Confidence 23344445555443 33 34455555544444443
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.75 E-value=0.07 Score=30.77 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+|..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888743
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.74 E-value=0.25 Score=43.24 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC----------------ChHHHHHHHH
Q 009782 160 FPWNSLISGYAEL-----GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG----------------LIRVGEKVHL 218 (526)
Q Consensus 160 ~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----------------~~~~a~~~~~ 218 (526)
.+|-+.+..+... +.++=....++.|.+-|+.-|..+|+.|++.+=+-. +-+-+.++++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 3444444444332 344555556677888888888888888887764321 2356888999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhcC
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGD-IVKARTVFDRIG 256 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 256 (526)
+|...|+-||-.+-..|++++.+.+- ..+..++.-.|+
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999988775 334444444444
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.72 E-value=3.3 Score=37.85 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=57.2
Q ss_pred hHHHHHHhccCCC-------CChhHHHHHHHhcCCc-----hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--H
Q 009782 343 LDQACWLFDHMPQ-------KDVVSWNSIIHAHSKD-----HEALIYFEQMERDGVLPDHL--TFVSLLSACAHLGS--V 406 (526)
Q Consensus 343 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~-----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~ 406 (526)
..+|..+|+.|++ ++...+..|+..-... +.+..+|+.+...|+..+.. ....++..+..... .
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v 198 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV 198 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence 3456667777764 4445566665553222 55778888888878776544 34444443333322 3
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
..+.++++.+.+. |+++....|..+.-.
T Consensus 199 ~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 199 ARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 4778888888887 888887777665443
No 267
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.71 E-value=0.076 Score=47.61 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=76.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG 473 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 473 (526)
-..-|.++|.+++|+..+.... .+.| |..++..-..+|.+..++..|..-...++..+-.- ..|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3456778899999999888876 4566 78888888888888888888887775665433221 44555555555677
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
+..+|.+-++.+++++|.+.. |-..|.+.....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 888888888999999988543 44444444444443
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.69 E-value=5.1 Score=42.80 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=16.0
Q ss_pred HHHHHHhcCChHHHHHHhccCCC
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
.+..|++...|++|.++.....+
T Consensus 1032 av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHHhccc
Confidence 44567777778888887766554
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.68 E-value=4 Score=38.63 Aligned_cols=117 Identities=10% Similarity=0.004 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---CC-----
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP---RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EA----- 457 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p----- 457 (526)
...++..+.+.+.+.|.++.|...+..+... +... .+...-.-.+.+...|+..+|+..+.+.+.. .+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3446777777788888888888888777653 2111 2333444566677777777777766333320 00
Q ss_pred --------------------CH-------HHHHHHHHHHHhc------CChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 458 --------------------SP-------VVWGALLYACYLH------GNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 458 --------------------~~-------~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
+. ..+..+..-+... ++.+++.+.|+.+.++.|....+|..++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 00 1222222223334 77888999999999999998888888877776
Q ss_pred hc
Q 009782 505 NA 506 (526)
Q Consensus 505 ~~ 506 (526)
+.
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 54
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.61 E-value=4.5 Score=39.03 Aligned_cols=101 Identities=11% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-C-CCCH--HHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-F-EASP--VVWGALL 466 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~p~~--~~~~~l~ 466 (526)
.+-..|..++-+.|+.++|.+.++++.+.+...-+......|+.++...+.+.++..++ .... . -|.. ..|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL-~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL-AKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH-HHhccccCCchHHHHHHHHH
Confidence 33344666666778888888888888764222223456677888888888888888877 3332 1 2332 5555554
Q ss_pred HHHHhcCC---------------hHHHHHHHHHHHccCCCC
Q 009782 467 YACYLHGN---------------VCMGETAAQKLFELEPDN 492 (526)
Q Consensus 467 ~~~~~~g~---------------~~~a~~~~~~~~~~~p~~ 492 (526)
-.+...++ -..|.+.+.++.+.+|.-
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 43333332 123557777777766653
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.52 E-value=0.51 Score=36.13 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=59.0
Q ss_pred HHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc----chHHHHHHHHHhcCCh
Q 009782 435 LYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE----HNFELLIKIYGNAGRL 509 (526)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 509 (526)
++...|+.+.|++.|.+.+..-| ....||.-..++.-+|+.++|+.-+++++++..+.. .+|.--+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45567777777777777776666 346777777777777777777777777777543211 2345556667777777
Q ss_pred HHHHHHHHHHHhCC
Q 009782 510 DDVERVERMLVDRG 523 (526)
Q Consensus 510 ~~A~~~~~~m~~~g 523 (526)
+.|..-|+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777666665544
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.48 E-value=0.077 Score=32.31 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
++..+...|.+.|++++|.++|.+.+...|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777776666666644
No 273
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.43 E-value=0.46 Score=41.69 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=70.1
Q ss_pred HHHHhhcC--CCCcccHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh----------------
Q 009782 249 RTVFDRIG--NKDLISYNSMLTGYIH-----HGLLVEAFDIFRGMILNGFDPDPVAISSILANA---------------- 305 (526)
Q Consensus 249 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---------------- 305 (526)
++.|.... +.|..+|-+.+..+.. .++.+-....++.|.+-|+.-|..+|..+|.-+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 4555666666665543 355666667788888888888888888888655
Q ss_pred ---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh
Q 009782 306 ---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343 (526)
Q Consensus 306 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (526)
.+-+-+..++++|...|+.||-.+-..+++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 33457888999999999999999999999999887754
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.35 E-value=3.2 Score=36.07 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhc
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS--PVVWGALLYACYLH 472 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 472 (526)
.+...|+++.+...++.... ..| ....+......+...++.+.|...+.+.+...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 44555555555555555532 111 2222222333344455555555555555544444 24455555555555
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++++.|...+.......|.....+..+...+...|.++++...+.+..
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555533334444444444445555555554443
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.33 E-value=1.8 Score=42.16 Aligned_cols=158 Identities=10% Similarity=0.086 Sum_probs=80.0
Q ss_pred HHHhcCChHHHHHHHH--HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 009782 168 GYAELGEYEDAIALYF--QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~--~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 245 (526)
...-.++++++.++.+ ++.. .+ | ..-.+.+++-+.+.|..+.|+++-.+ . ..-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 3444566666555554 1111 11 1 23356666666667777766665322 1 1233445566777
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC
Q 009782 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 325 (526)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. |......+....|+.+.-.++.+.....|.
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 77766665554 44467777777777777777777666542 223333333334666665555555554442
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
++....++.-.|++++..+++.+..
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3555556666777777777776544
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.25 E-value=2.2 Score=40.99 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
-..|..+..+.|+.++|++.+.+.++..|.. .....|+.++...+.+.++..++.+.-++
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3456666677788888888886666555532 45667777777788888777777775443
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.15 E-value=4.5 Score=37.01 Aligned_cols=129 Identities=11% Similarity=0.173 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHh--c----CChhHHHHHHhccccCCCCc-----ccHHHHHHHHHhcCC-
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT--F----GLIDEAHQVFDQMSNRTAFA-----FPWNSLISGYAELGE- 174 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~- 174 (526)
++....+++.+.+.|+..+..++-+....... . .....|.++++.|++..|.. .++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788889999998888777664433333 1 23557889999998876532 345555444 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 009782 175 ---YEDAIALYFQMEEEGVEPDQF--TFPRVLKACAGLGL--IRVGEKVHLDAVRFGFGFDGFVLNALVD 237 (526)
Q Consensus 175 ---~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 237 (526)
.+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356677788888877765554 23333333332222 3467788888888888877776665543
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.11 E-value=2.7 Score=34.36 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC--ChhHHHHHHh
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG--LIDEAHQVFD 150 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~ 150 (526)
.-.++.++.+.+.+++|+...+..+++.+.+.|.+....+ +.+.++-+|.......+-.+.... -.+-|.+.+.
T Consensus 11 ~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 11 AVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHH
Confidence 3456778888889999999999999999999998775444 445555555544444443332211 1334555555
Q ss_pred ccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 151 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
++. ..+..++..+...|++-+|+++.+.... .+......++.+....+|...-..+++-..+.+
T Consensus 87 RL~------~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 RLG------TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred Hhh------hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 553 2577888999999999999999877532 223334556777777777766666666655543
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.03 E-value=3.9 Score=35.82 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-------cCChHH---HHHHHHhhcCCCCCH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-------AGLIDE---AYSMIVEKMEFEASP 459 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~~---A~~~~~~~~~~~p~~ 459 (526)
..+...++-++.+.++++.|...+++....++-.||+. |...+.++.. ..+... |..-|.+.+..-|+.
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 44666677777788888888888888887766666543 3333333332 123333 333333333333332
Q ss_pred ------HH-----------H-HHHHHHHHhcCChHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChHHHHHHHHH
Q 009782 460 ------VV-----------W-GALLYACYLHGNVCMGETAAQKLFELEPDNEH---NFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 460 ------~~-----------~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
.. + ..+.+-|.+.|.+..|..-++.+++.-|+... ++..+..+|.+.|-.++|.+.-+-
T Consensus 150 ~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 150 RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 11 0 22345678899999999999999987666444 466678889999999998876554
Q ss_pred HH
Q 009782 519 LV 520 (526)
Q Consensus 519 m~ 520 (526)
+.
T Consensus 230 l~ 231 (254)
T COG4105 230 LG 231 (254)
T ss_pred HH
Confidence 43
No 280
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=4.7 Score=36.06 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
+...+++++.... +....+... ......+++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+
T Consensus 120 sqlr~~ld~~~~~---~~e~~~~~~-~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 120 SQLRQFLDKVLPA---EEEEALAEA-KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHHhcCh---HHHHHHHHh-hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3455555555422 333333333 34457788999999998888764 344566777888999999999999999998
Q ss_pred ccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc
Q 009782 153 SNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFD 228 (526)
Q Consensus 153 ~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~ 228 (526)
+....+. .....-|..+.+.....+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+... .-|
T Consensus 195 P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 195 PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 7664321 1122334455555555555555444443 24 444445566666677777777766555544321 223
Q ss_pred hhHHHHHHHHHHhcC
Q 009782 229 GFVLNALVDMYAKCG 243 (526)
Q Consensus 229 ~~~~~~li~~~~~~g 243 (526)
...-..|+..+.-.|
T Consensus 272 ~~~Rk~lle~f~~~g 286 (304)
T COG3118 272 GEARKTLLELFEAFG 286 (304)
T ss_pred cHHHHHHHHHHHhcC
Confidence 334444555544444
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=3.1 Score=33.88 Aligned_cols=130 Identities=13% Similarity=0.072 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChh-HHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHH----
Q 009782 92 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG-ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI---- 166 (526)
Q Consensus 92 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li---- 166 (526)
..|...++. ++.+..++|+.-|..+.+.|...-+. ..-.........|+...|...|+++....+.|....-+.
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 344444432 34555666666666666655332221 111222334456666666666666655544333322111
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 167 -SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 167 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
-.+..+|.+++...-.+.+-..+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12344556666555555554433222222233333344455556666555555544
No 282
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.19 Score=42.90 Aligned_cols=85 Identities=11% Similarity=-0.030 Sum_probs=49.4
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCChHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEH-YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW-GALLYACYLHGNVCM 477 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~ 477 (526)
|.....++.|...+.+.. -+.|+..+ |+.=+..+.+..+++.+..-..+++.+.|+..-- --+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555554 45665533 3444555666677777766666666666666333 333344556666777
Q ss_pred HHHHHHHHHc
Q 009782 478 GETAAQKLFE 487 (526)
Q Consensus 478 a~~~~~~~~~ 487 (526)
|+..++++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777644
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=9.1 Score=39.05 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=77.4
Q ss_pred HHHHHhcCChhHHHHHHhccccCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC
Q 009782 133 LRLYATFGLIDEAHQVFDQMSNRTAF---AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 209 (526)
++.+.+.+.+++|++.-+......+. ...+...|..+.-.|++++|-...-.|... +..-|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 55566777888888877766554432 245777788888888888887777666542 33334444444444443
Q ss_pred hHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------------------CCcccHHHHHH
Q 009782 210 IRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--------------------KDLISYNSMLT 268 (526)
Q Consensus 210 ~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~li~ 268 (526)
......++ -.| ...+...|..++..+.. .+...-.+...+-.. .+...-..|+.
T Consensus 439 l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 32221110 001 01223334444444433 222222222111110 12223344888
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 009782 269 GYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~ 288 (526)
.|...+++.+|..++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 89999999999988876654
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.69 E-value=12 Score=40.28 Aligned_cols=146 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh-------hhhHHHHHHH
Q 009782 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA-------SLLRIGAQVH 315 (526)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------~~~~~a~~~~ 315 (526)
++++.|+..+.++. ...|...++.--++|.+++|+.++ +|+...+..+..++ ..++.|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555544 223344444444555566665554 24444443333333 2333333333
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhH------HHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS------WNSIIHAHSKDHEALIYFEQMERDGVLPD 389 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~~~a~~~~~~m~~~~~~p~ 389 (526)
+..-+. .-.+.+|..+|+|.+|+.+..++..+-... ....+...+++-+|-+++.+-.. |
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-----d 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-----D 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----C
Confidence 322111 234567888888888888888776532211 11122224555555555555433 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVM 416 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 416 (526)
..-.+..+++...+++|..+-...
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223344456666777777665544
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.52 E-value=0.14 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
+|..+...+...|++++|...|++++++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666666555
No 286
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.48 E-value=3.2 Score=33.06 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 207 (526)
...++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455666655566666666666665554 24444555555555543
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.47 E-value=0.15 Score=29.32 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=3.6 Score=34.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=46.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRV----EHYACMVNLYGRAGLIDEAYSMIVEKME-FEASPVVWGALLYACY 470 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~ 470 (526)
+...+...+++++|+..++..... +.|. ..--.|.+.....|.+++|+..+ +... ..-.......-...+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L-~t~~~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTL-DTIKEESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hccccccHHHHHHHHhhhHHH
Confidence 334455666666666666655422 2221 11123344555666666666666 3332 1112222333345566
Q ss_pred hcCChHHHHHHHHHHHccC
Q 009782 471 LHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~ 489 (526)
..|+-++|...|+++++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6666666666666666655
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.38 E-value=2.6 Score=32.59 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
.+..++.+...|+-++-.++++++.+. -++++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 455566677777777777777776643 256666666777777777777777777777777664
No 290
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.33 E-value=20 Score=41.81 Aligned_cols=363 Identities=13% Similarity=0.050 Sum_probs=181.3
Q ss_pred HHHHccCChHHHHHHHHHHhhhcc--CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChH
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLL--RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 176 (526)
.+--+.+.+..|...++.-..... ......+-.+...|+.-+++|...-+... ...++ +...-|......|++.
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc---cHHHHHHHHHhhccHH
Confidence 344456667777777766311100 11223333444478888888877766653 11122 2334455566778888
Q ss_pred HHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCCHHHHHHHHhh
Q 009782 177 DAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN-ALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~ 254 (526)
.|...|+.+.+.+ |+ ..+++-+++.....|.++.+.-..+.....- .+....++ .=+.+-.+.++++.......
T Consensus 1467 da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 8888888888753 44 5677777777667777776666544443321 22222222 22344467777777777666
Q ss_pred cCCCCcccHHHH--HHHHHhCCChHH--HHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC-CchhH
Q 009782 255 IGNKDLISYNSM--LTGYIHHGLLVE--AFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE-WDLCI 329 (526)
Q Consensus 255 ~~~~~~~~~~~l--i~~~~~~g~~~~--a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 329 (526)
..+..+|... .....+...-|. -.+..+-+.+.-+.| +.+| +.. .=...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~----------------s~~~Sy~~~ 1596 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSAC----------------SIEGSYVRS 1596 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHh----------------hccchHHHH
Confidence 4445555443 222222221111 111222222210000 0000 000 00123
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCC-----CChhHHHHHHHh---cCCchH-HHHHHHHHHHC----CCCCC-HHHHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVVSWNSIIHA---HSKDHE-ALIYFEQMERD----GVLPD-HLTFVS 395 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~---~~~~~~-a~~~~~~m~~~----~~~p~-~~~~~~ 395 (526)
|..+++.+.-.. .+.-.+.+..... .+...|..-+.- +.+..+ .+..=+-+... +..-. ..+|..
T Consensus 1597 Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1597 YEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 344444433222 1222222222221 111223222222 222222 11211222221 22222 347888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-CCCC--------HHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-FEAS--------PVVWGALL 466 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~--------~~~~~~l~ 466 (526)
..+...+.|.++.|...+-.+.+. + .|. .+--..+.+...|+...|+.++++.++ ..|+ +..-+.++
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~-r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i 1751 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKES-R-LPE--IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI 1751 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhc-c-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh
Confidence 888888899999999888887764 3 333 445667888999999999999966662 1222 22222222
Q ss_pred HH--------H-HhcCC--hHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 467 YA--------C-YLHGN--VCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 467 ~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
.. | ...|+ .+..++.|.++.++.|.....+..++
T Consensus 1752 ~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1752 FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 21 2 23444 34566788888888886555555555
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.30 E-value=0.38 Score=43.37 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=46.6
Q ss_pred cCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 446 (526)
.|++++|+++|..-.. +.| |..++..-..+|.+...+..|+.-...+... -..-...|..-+.+-...|+..+|.
T Consensus 110 QgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred ccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3566677777766554 445 6666666666777776666666555554432 0001222333333333344555555
Q ss_pred HHHHhhcCCCCCH
Q 009782 447 SMIVEKMEFEASP 459 (526)
Q Consensus 447 ~~~~~~~~~~p~~ 459 (526)
+-++..+...|+.
T Consensus 186 kD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 186 KDCETVLALEPKN 198 (536)
T ss_pred HhHHHHHhhCccc
Confidence 5555555666653
No 292
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.28 E-value=0.79 Score=37.54 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC-----------ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 442 IDEAYSMIVEKMEFEASP-VVWGALLYACYLHG-----------NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 442 ~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
+++|+.-|++++.++|+. .++..+..++...+ .+++|...|+++...+|.|.. |..-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRKSLEMA------ 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHH------
Confidence 345555556666777865 66666666665433 256667777777778888766 55544443
Q ss_pred HHHHHHHHHHHhCCC
Q 009782 510 DDVERVERMLVDRGL 524 (526)
Q Consensus 510 ~~A~~~~~~m~~~g~ 524 (526)
++|-++..++.+.++
T Consensus 124 ~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 AKAPELHMEIHKQGL 138 (186)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HhhHHHHHHHHHHHh
Confidence 346666666665553
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.20 E-value=1.3 Score=35.98 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=17.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCC
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
-.+|.-+-.+.|++.+|...|..+.
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHH
Confidence 3456666667778877777777655
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.15 E-value=6.6 Score=35.73 Aligned_cols=160 Identities=13% Similarity=0.044 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-------ccC-ChHHHHHHHHHHhhh--------ccCCCh----
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCY-------QLK-AVEHGIKLHRLIPTN--------LLRKNK---- 126 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 126 (526)
.+.|+++.|..++.+........++.....+...|. ..+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 466788888888877765432223333333333222 234 666666665554332 111222
Q ss_pred -hHHHHHHHHHHhcCChh---HHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009782 127 -GISSKLLRLYATFGLID---EAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201 (526)
Q Consensus 127 -~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 201 (526)
.++..++.+|...+..+ +|.++++.+....++ +..+-.-+..+.+.++.+.+.+.+.+|... +......+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 34555666666655443 455555555444443 355556666666677777788888777764 222334455555
Q ss_pred HHHhc--cCChHHHHHHHHHHHHhCCCC
Q 009782 202 KACAG--LGLIRVGEKVHLDAVRFGFGF 227 (526)
Q Consensus 202 ~~~~~--~g~~~~a~~~~~~~~~~g~~~ 227 (526)
..+.. ......+...++.+....+.|
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCC
Confidence 44421 122344555555544433333
No 295
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.95 E-value=5.7 Score=34.43 Aligned_cols=219 Identities=18% Similarity=0.147 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHhhh-ccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 69 LQALDSIIQDLESSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555443321 3456666667777777777777777766652 22444555666666666777777888
Q ss_pred HHHhccccCCCCc-ccHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHHhccCChHHHHHHHHHH
Q 009782 147 QVFDQMSNRTAFA-FPWNSLIS-GYAELGEYEDAIALYFQMEEEGVEP----DQFTFPRVLKACAGLGLIRVGEKVHLDA 220 (526)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 220 (526)
+.+.......+.. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 8877776654432 22233333 57777888888888877754 222 2222333333345667777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 221 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
...........+..+...+...++++.|...+........ ..+..+...+...+..+.+...+.+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6653211355566666667777777777777766654332 23333333344555566666666665553
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.81 E-value=0.012 Score=47.54 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 150 (526)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433445555555555555555555555555
No 297
>PRK09687 putative lyase; Provisional
Probab=92.32 E-value=8.6 Score=34.96 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
+..+-...+.++.+.|+ ..|+..+.+.++. ++ .....+.++...|+. +|...+.++.+..|
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444445555444 2333333344432 22 122344444555543 45555555555444
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.26 E-value=1 Score=32.38 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
.-++.+-++.+......|++....+.+++|.|.+++..|.++++-+.... ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34566677777778888899999999999999999999999988777432 224456666654
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.14 E-value=1.3 Score=32.26 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 74 SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 74 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
++.+-++.+....+.|++....+.+++|.|.+++..|.++++-+...- ......|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 556666777777888888888888888888888888888888776542 2333367666643
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.13 E-value=5.4 Score=32.25 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=25.7
Q ss_pred ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 157 (526)
+.++.+++..++..+.-.. +.....-..-...+...|++.+|..+|+++....+
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 4455666666665554421 11111112222334555666666666666655544
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.11 E-value=0.31 Score=27.35 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 494 HNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 358899999999999999999999987643
No 302
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.08 E-value=0.4 Score=39.20 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR----LDDVERVERML 519 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 519 (526)
+++|+.-|++++.++|+...++..++.+|...+. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888888999999999999999987653 33455555544
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.07 E-value=0.19 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
.|..+...|...|++++|+..|.+++.+.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666677777777777777666665554
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.07 E-value=0.1 Score=29.58 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=15.5
Q ss_pred hhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 009782 451 EKMEFEAS-PVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 451 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 479 (526)
+++...|+ ...|..+...+...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44444553 355555555555666555553
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=17 Score=37.62 Aligned_cols=177 Identities=11% Similarity=0.112 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH----HhcCChhHHHHHHhcc-ccCCCCcccHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY----ATFGLIDEAHQVFDQM-SNRTAFAFPWNSL 165 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~-~~~~~~~~~~~~l 165 (526)
......-+..+.+...++-|..+-.. . ..+..+...+...| -+.|++++|...+-+- .-.+| ..+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~V 403 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEV 403 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHH
Confidence 44555666666676677777665432 2 33444444444444 4578899888776544 33344 346
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCC
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~ 244 (526)
|.-|....+...--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|. ..| ....+..+-+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 66777777777888888888888764 44555678888998888887776665543 221 112 2344555566666
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
.++|..+-..... +.. .+--.+-..|++++|++++..+
T Consensus 479 l~~a~~LA~k~~~-he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 6666655544443 222 2222344567788888877765
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.51 E-value=1.2 Score=39.74 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCcchHHH
Q 009782 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEE-----EGVEPDQFTFPR 199 (526)
Q Consensus 126 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~ 199 (526)
..++..++..+..+|+.+.+.+.++++...+|-. ..|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3455667777777788888888888877776633 5677888888888888888888877655 366666655544
Q ss_pred HHHH
Q 009782 200 VLKA 203 (526)
Q Consensus 200 ll~~ 203 (526)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.21 E-value=5.1 Score=33.48 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
.+..+...|++.|+.+.|.+.+.++.+. ...+. ...+-.+++...-.+++..+...+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444444444444444444432 22221 223334444444444444444443
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.19 E-value=1.5 Score=34.67 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=40.7
Q ss_pred hcCChHHHHHHHHhhc-CCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 438 RAGLIDEAYSMIVEKM-EFEASPVVWGA-LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
..++++++..++ +.+ -..|+..-... -...+...|++.+|.++++.+.+-.+..+..-..+..++.-.|+
T Consensus 22 ~~~d~~D~e~lL-dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAML-DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHH-HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 467777777777 444 34554422222 23345677777777777777776666655444445555555554
No 309
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.11 E-value=37 Score=39.85 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+|-...+...+.|+++.|....-.+.+..+ +.++-..++.+...|+...|..++++-.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7788888888999999999988888877663 3467888999999999999999998877544
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.09 E-value=0.35 Score=25.33 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 009782 495 NFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
+...++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888888775
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.96 E-value=6.8 Score=31.14 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=41.2
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEH-YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 469 (526)
...++.+++..+++.+. -+.|+..- -..-...+...|+|++|.+++.+..+..+....-..|+..|
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34788999999999886 45664322 22334557789999999999944444343433333444333
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.87 E-value=0.51 Score=27.98 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+++.|+.+|...|++++|.+++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567777888888888888887777653
No 313
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.53 E-value=0.2 Score=45.15 Aligned_cols=85 Identities=9% Similarity=0.120 Sum_probs=42.1
Q ss_pred cCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 009782 439 AGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
.|.++.|++.|..++...|.. ..|..=.+++.+.++...|++-+..+++++|+...-|-.-..+-...|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 344555555554555544443 3333333444455555555555555555555554444444445455555555555555
Q ss_pred HHHhCC
Q 009782 518 MLVDRG 523 (526)
Q Consensus 518 ~m~~~g 523 (526)
...+.+
T Consensus 207 ~a~kld 212 (377)
T KOG1308|consen 207 LACKLD 212 (377)
T ss_pred HHHhcc
Confidence 544443
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.44 E-value=0.27 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=22.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444444444333333444444445555444444444443
No 315
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.22 E-value=2 Score=41.91 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=76.5
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 477 (526)
...|+...|...+..+. ...|- ......|.+.+.+.|...+|-.++.+.+.+.- .+.++..+.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 45688888888887776 44552 33445667777788888888888877776553 44677888888999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
|++.+++++++.|+++..-+.|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998887777766554
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.01 E-value=0.6 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=10.8
Q ss_pred HHHHhcCChHHHHHHHHHHHccCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++.+.|+.++|.+.++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444444444444444444
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.95 E-value=3.5 Score=34.46 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=32.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ--FTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+++.....|++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3555566666666666666666665554322221 2344455555556666666555554443
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.93 E-value=27 Score=36.28 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
....-+..+.+..-++-|..+-+.-...... ........+-+.+.|++++|...|-+-... +.| ..++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 3445667777777788888776544322111 122333445566789999999888776532 233 235666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc--cHHHHHHHHHhCCChHHHHHHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI--SYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
...+..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.... ... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 66777777788888888865 444457799999999999999998888773 222 24556667777777777766544
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+... .......++...+++++|...+..+
T Consensus 488 k~~~-----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 4322 4455666677777788877766553
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.86 E-value=0.83 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+|..++.+|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999988753
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.68 E-value=5.3 Score=29.12 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
-++|..+-+++...+.. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. .|-.+++..-+.+|..+|
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 45555666665554432 222333345678899999999999999988999999888777 566676777777777665
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.65 E-value=23 Score=35.17 Aligned_cols=123 Identities=14% Similarity=0.037 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCC-CCHHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE-ASPVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~ 467 (526)
+..+|...+.--...|+.+.+.-.++.... .+..-...|-..+.-....|+.+-|..++.....+. |.......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345788888888888888888888887754 233334556666666666688888887774444322 22222222222
Q ss_pred H-HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH
Q 009782 468 A-CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 468 ~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
+ +-..|++..|..+++++.+-.|.....-..-+....+.|+.+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 2 345678899999998888766776665555666777788887776
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.37 E-value=0.61 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998864
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.28 E-value=1.6 Score=38.72 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++.....|..+|.+.+|.++-++++.++|-+...+..|+..|...|+--+|.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455677888888888888888888888888888888888888888777777776664
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.14 E-value=0.85 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.+++.+...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777777665
No 325
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.96 E-value=8.7 Score=34.42 Aligned_cols=100 Identities=8% Similarity=0.096 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHhc-cC-CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC-CC--CHH
Q 009782 386 VLPDHLTFVSLLSACAH-LG-SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF-EA--SPV 460 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p--~~~ 460 (526)
+--|..+...+++.... .+ ....-.++.+-+...++-.++..+....++.++..+++.+-.+++....+. .| |..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 34456666666666554 22 334445666666666677888888889999999999999999999555543 34 668
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKL 485 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~ 485 (526)
.|..++......||..-...+..+-
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 8999999999999987776666553
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.82 E-value=0.89 Score=27.53 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..|..+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788888888888888888887544
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.64 E-value=3.4 Score=29.89 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
++.+-++.+....+-|++....+.+++|.+.+++..|.++|+....+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 45555666666778899999999999999999999999999888754 3324456666554
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=15 Score=36.50 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHH
Q 009782 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 215 (526)
..+.|+++.|.++..+.... .-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....
T Consensus 647 al~lgrl~iA~~la~e~~s~----~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANSE----VKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhhcch----HHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 34567777777666554333 4477777777777777777777766543 4455556666666665555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555542 133334555667777777666543
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.01 E-value=1.2 Score=28.37 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=24.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.+.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567888999999999999999999998763
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.80 E-value=15 Score=30.77 Aligned_cols=129 Identities=9% Similarity=-0.037 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGA 464 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ 464 (526)
..|..++.+.. .+.. +.....+.+...++ ......+ -.+...+..+|++++|...+...++...|. .+-..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~-~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG-KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 34555555443 2333 44444455544311 1111222 234566788999999999887777644343 22234
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|.+.....|.+++|+..++...+-.-. +.....-+++|...|+.++|+.-|++....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 556677888898888877754332211 1224456788999999999999888887764
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.77 E-value=3.2 Score=30.36 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+.+..+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 34455556666778899999999999999999999999999998875 33333377766653
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.54 E-value=22 Score=32.34 Aligned_cols=18 Identities=11% Similarity=-0.140 Sum_probs=11.6
Q ss_pred HHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~ 486 (526)
+.+.++++.|.+.|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445667777777776543
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.34 E-value=9.4 Score=27.89 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554411 22222233455678999999999999999999998877654 466777777777878877
Q ss_pred cCCCCcHHHHHH
Q 009782 289 NGFDPDPVAISS 300 (526)
Q Consensus 289 ~~~~p~~~~~~~ 300 (526)
.| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.09 E-value=16 Score=37.72 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=33.4
Q ss_pred HHHHHhcCChHHHHHHhcc--CCCCChhHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---cCCHH
Q 009782 334 IVVYSKDGKLDQACWLFDH--MPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAH---LGSVK 407 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~---~~~~~ 407 (526)
..++.-.|.+|.|.+.+-. ....+.+.+.+.+..+|-..-....-..+.... -.|...-+..||..|.+ ..+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 4555566777777776665 223455555555555443322111112222210 01111445556665553 34666
Q ss_pred HHHHHHHHHH
Q 009782 408 VGERLFSVMV 417 (526)
Q Consensus 408 ~a~~~~~~~~ 417 (526)
+|.+++--+.
T Consensus 345 ~Al~Y~~li~ 354 (613)
T PF04097_consen 345 EALQYLYLIC 354 (613)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 335
>PRK10941 hypothetical protein; Provisional
Probab=86.86 E-value=3.5 Score=36.96 Aligned_cols=64 Identities=6% Similarity=-0.054 Sum_probs=31.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.+-.+|.+.++++.|+++.+..+...|+. .-+.--+-.|.+.|.+..|..-++..++.-|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 33344455555555555554444445532 33333444455555555555555555555555444
No 336
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.71 E-value=19 Score=30.77 Aligned_cols=178 Identities=13% Similarity=0.010 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH--HHhcCChHHHHHHH
Q 009782 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG--YAELGEYEDAIALY 182 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~ 182 (526)
|-+..|.-=|.+..... +.-+.++|-+.--+...|+++.|.+.|+...+.+|. .-|..+=++ +--.|+++-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHH
Confidence 33344444444444332 334678888888888999999999999999888873 223333322 23468888888877
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHhhcCCCC--
Q 009782 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA-LVDMYAKCGDIVKARTVFDRIGNKD-- 259 (526)
Q Consensus 183 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~-- 259 (526)
...-+.. |+..--...+-.-...-++.+|..-+.+--+ ..|..-|.. ++..|...=..+.+.+-...-.+.+
T Consensus 157 ~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 157 LAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 7766543 3222222222222344466666554332211 223333333 3333333323333333333322222
Q ss_pred -----cccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 260 -----LISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 260 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..||--+...+...|+.++|..+|+-....
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 257778888899999999999999877654
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.69 E-value=1.7 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
..+...+...|+++.|...+++.+++.|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444445555555555555444444
No 338
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.38 E-value=29 Score=32.91 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLIKIYG-NAGRLDDVERVERMLVD 521 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 521 (526)
.+..+.+.|-+..|.++.+-++.++|. |+...-..++.|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345678899999999999999999998 8877777777776 67778777777776543
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.69 E-value=3.9 Score=34.71 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
|.+.-+..+.+.+...+|+....+.++.+|.. ..-..++..++-.|++++|...++-+-++.|.+.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455677788899999999998888888854 6777888899999999999999999888888744
No 340
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.31 E-value=0.79 Score=43.56 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=61.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCC
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGN 474 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 474 (526)
+..+...+.++.|..++.++.+ +.||-..| ..=..++.+.+++..|+.=..+++...|.. ..|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 3444556677777777777764 46654333 223366777777777777666777767654 444444556666677
Q ss_pred hHHHHHHHHHHHccCCCCcc
Q 009782 475 VCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~ 494 (526)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 77777777777777777666
No 341
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.21 E-value=20 Score=29.50 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=81.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHHhh
Q 009782 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG--LIDEAYSMIVEK 452 (526)
Q Consensus 375 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 452 (526)
.++++-+.+.++.|+...+..+++.+.+.|......++++. ++-+|.......+-.+.... -..-|++++ +.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML-kR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDML-KR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHH-HH
Confidence 45666677788999999999999999999987665555432 56666555444333222211 123344444 33
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 453 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++ ..+..++..+...|++-+|.++.+.....+.- .-..+..+-.+.++..--..+++-..+++
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 33 13455667788899999998888776443322 13445566666666665555555554444
No 342
>PRK09687 putative lyase; Provisional
Probab=85.15 E-value=30 Score=31.53 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=8.7
Q ss_pred CChhHHHHHHHHHHhcCC
Q 009782 124 KNKGISSKLLRLYATFGL 141 (526)
Q Consensus 124 ~~~~~~~~ll~~~~~~g~ 141 (526)
+|..+....+..+...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 444444445555555443
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.65 E-value=36 Score=32.09 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=42.7
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCC---------CChh-HHHHHHHhcCCchHHHHHHHHHHHC
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---------KDVV-SWNSIIHAHSKDHEALIYFEQMERD 384 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~li~~~~~~~~a~~~~~~m~~~ 384 (526)
....++..+.+.+.+.|+++.|...+..+.+ |.+. .+.-++-.-|+..+|+..+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677888999999999999988887765 1221 2344555567778888888887763
No 344
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.24 E-value=6.9 Score=38.50 Aligned_cols=135 Identities=14% Similarity=0.050 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--HHH
Q 009782 387 LPDHLTFVSLLSACAHL--GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVW 462 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 462 (526)
-|+..+..+++.-...- ...+-+..++-.|. + .+.|--...+...-.+...|+...|...+..++...|.. ...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 45665555555443322 12233444444443 2 334433333322222345799999999998888888854 666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..|.....+.|-.-.|..++.+.+.+.-..+..+..++++|....+.+.|++.|++..+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 7788888888988899999999999887778889999999999999999999999987764
No 345
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.15 E-value=2.9 Score=30.24 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=46.0
Q ss_pred hhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCChHHH
Q 009782 451 EKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 451 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A 512 (526)
+.+..+|+. ...-.+...+...|++++|++.+-.+++..++ +..+-..|+.++...|.-+..
T Consensus 13 ~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 13 AALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 555567754 77778888999999999999999999987755 577788999999998886543
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=39 Score=35.90 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=23.6
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 241 (526)
+......+.+...++.+....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555666667777776665555566666666666654
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.13 E-value=18 Score=28.28 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=46.4
Q ss_pred CCchhHHHHHHHHHHhcCChH---HHHHHHHhhcC-CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 423 SPRVEHYACMVNLYGRAGLID---EAYSMIVEKME-FEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.++..+--.+..++.+..+.+ +-+.++++..+ -.|+. ....-|.-++.+.++++.++++.+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555556667776665544 34556655553 34433 444556667778888888888888888888887663
No 348
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=14 Score=32.15 Aligned_cols=50 Identities=6% Similarity=-0.045 Sum_probs=25.0
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
...|++-++++.-..++...|.|..+|..-+++-...=+.++|..=|..+
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33445555555555555555555555555555544444444444444443
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.45 E-value=6.7 Score=35.37 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc
Q 009782 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF----AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195 (526)
Q Consensus 120 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 195 (526)
.|.+....+...++..-....+++.+...+-++....-- ..+-.+.+..+. .=+.++++.++..=.+-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344555555555555555566777777777666544210 022223333333 345668888888878888888999
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 196 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
+++.+|..+.+.+++..|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999998888888888888877776554
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.24 E-value=4.4 Score=28.09 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=21.7
Q ss_pred hcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
...+.++|+..|...+...+++ .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444333322 4445555555555555555444
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.02 E-value=5.3 Score=35.97 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=67.1
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------CChhHHHHHHHhc--CCchHHHHHHHHHHHCCCCCCHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------KDVVSWNSIIHAH--SKDHEALIYFEQMERDGVLPDHLT 392 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~--~~~~~a~~~~~~m~~~~~~p~~~~ 392 (526)
|......+...++..-....+++.+...+-++.. ++...+. .+..+ -+.++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 4444455555566666666777777777665553 2222221 22222 233578888888888999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
++.+++.+.+.+++..|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999888777665
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.68 E-value=9.8 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
....++....+.|++++|.+.|.++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445556666666666666666666543
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=82.31 E-value=18 Score=26.87 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
..++|..+.+++...+. -...+--.-+..+.+.|++++|+..=.....||...|-+|-.. .|-.+++...+.++..+|
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 45667777777766654 2333334456678899999999666666666888888887776 566677777777665544
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.99 E-value=54 Score=32.14 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=106.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhc--CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAH--SKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
|....-+++..+....++.-.+.+..+|.. .+-..|-.++.+| ...++-..+|+++.+..+ |......-+..+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en~n~~l~~lWer~ve~df--nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWERLVEYDF--NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCchhhHHHHHHHHHhcc--hhHHHHHHHHHHH
Confidence 344445566666666666666666666553 3444555555553 233566777777777433 3333333333344
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHHhcCChHHHHHHH---HhhcCCCCCHHHHHHHHHHHHhc
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPR------VEHYACMVNLYGRAGLIDEAYSMI---VEKMEFEASPVVWGALLYACYLH 472 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~p~~~~~~~l~~~~~~~ 472 (526)
..++...+..+|.++..+ +-|. ...|..|...- ..+.+....+. ....|..--...+.-+-.-|...
T Consensus 143 Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 143 EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 447788888888888764 3331 23444444322 23455555554 22334444556667677778889
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.++.+|++++..+++.+..|..+...++.-+..
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 999999999999999988888888888777654
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.77 E-value=4.3 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC
Q 009782 265 SMLTGYIHHGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (526)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888887654
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.30 E-value=17 Score=30.78 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=49.6
Q ss_pred HHhcCChHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCCh
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEA--SPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 509 (526)
..+.|+ ++|.+.|.+.-+ .| +.......+..|....|.+++++++-+++++.++ |+..+..|+.+|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 566666634433 33 2233444444555577888888888888885432 567788889999988888
Q ss_pred HHHH
Q 009782 510 DDVE 513 (526)
Q Consensus 510 ~~A~ 513 (526)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8873
No 357
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.62 E-value=44 Score=30.19 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=69.2
Q ss_pred ChhHHHHHHhccccCC---CCcccHHHHHHHHHh-cC-ChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHhccCChHHHH
Q 009782 141 LIDEAHQVFDQMSNRT---AFAFPWNSLISGYAE-LG-EYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVGE 214 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~---~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~ 214 (526)
.+.+|+++|+...... .+..+-..++..... .+ ....-.++.+-+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 4556666666332210 111344445555444 11 222223333333322 45677777778888888888888888
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 215 KVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 215 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
++++..... +..-|...|..+|+.....||..-..++.++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 887776655 55667778888888888888887777777543
No 358
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=80.48 E-value=4.3 Score=36.40 Aligned_cols=80 Identities=6% Similarity=0.043 Sum_probs=54.5
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGA-LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+..|+..|...+....+.|.+.+.-.+|.+.+...|.. ..|-. .-.-+...++++.+..++.+.++++|+++..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 44466666666665566677777777777777777744 55533 33446667888888888888888888888776654
Q ss_pred HH
Q 009782 500 IK 501 (526)
Q Consensus 500 ~~ 501 (526)
.+
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.31 E-value=35 Score=29.74 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCChHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLT-FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDEAYSM 448 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 448 (526)
++.|...|.+.+. +.|+..+ |..-+-++.+..+++.+.+--.... .+.||.. ...-+...+.....+++|+..
T Consensus 26 y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 26 YDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3556665555544 5666643 3444555556666666666555554 3455432 333444555566666666666
Q ss_pred HHhh
Q 009782 449 IVEK 452 (526)
Q Consensus 449 ~~~~ 452 (526)
+.++
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 6444
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.16 E-value=11 Score=32.20 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLY 467 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~ 467 (526)
|.+.-++.+.+.+.+++++...+.-++. -+.|...-..+++.|+-.|+|++|..-++-.-...|+ ..+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677788889999999998887763 3446777788999999999999999888333344553 366776665
Q ss_pred H
Q 009782 468 A 468 (526)
Q Consensus 468 ~ 468 (526)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.09 E-value=2.9 Score=22.19 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
.|..+...+...|++++|...+.+.+...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345566666677777777777766555544
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.77 E-value=4.7 Score=27.95 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=36.8
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHH---HHHHHHHhcCChHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFE---LLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 515 (526)
..++.+.|+..++.+++..++.+.-|. .|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999997776555444 567889999999998775
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.18 E-value=60 Score=31.56 Aligned_cols=203 Identities=16% Similarity=0.046 Sum_probs=97.0
Q ss_pred HHHHHHhhCCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 77 QDLESSVQNGITVQTET--FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 77 ~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
++++.+.+.|..|+... -.+.+..++..|+.+-+ +.+.+.|..++.. ...+-+...+..|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 34455556676665432 33455555667776543 3444455444321 1123345556778888877777643
Q ss_pred ccCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 009782 153 SNRT-AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT--FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229 (526)
Q Consensus 153 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 229 (526)
.... .....-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..+ .+.|..++.
T Consensus 92 ~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~ 163 (413)
T PHA02875 92 KFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDI 163 (413)
T ss_pred CcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCC
Confidence 2211 0000112233334455554 45555566666655432 12344555566776554444 344443322
Q ss_pred h--HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 230 F--VLNALVDMYAKCGDIVKARTVFDRIGNKDLI---SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 230 ~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
. .-.+-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 1 1112334445567776666666554443322 1123444344555543 34444556655553
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.85 E-value=33 Score=33.09 Aligned_cols=132 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGAL 465 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l 465 (526)
.|...-...-|.--...|++..|-+-+..... ..+.++.........+...|+++.+...+...-+.-... .+...+
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr--~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~ 363 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALR--NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCR 363 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHH--hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++.....|++++|....+-++..+-.++.........-...|-++++.-.|+++.
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
No 365
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.79 E-value=4.2 Score=34.82 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=29.4
Q ss_pred hcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
+.++.+.|.+++.+++...|+- ..|-.+...-.+.|+++.|.+.|++.++++|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4455555555555555555532 455555555555555555555555555555543
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.52 E-value=21 Score=30.95 Aligned_cols=85 Identities=7% Similarity=-0.046 Sum_probs=47.4
Q ss_pred hcCChHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhc-CChHHHHHHHHHHHcc---CCCCcchHHHHH---HHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP-------VVWGALLYACYLH-GNVCMGETAAQKLFEL---EPDNEHNFELLI---KIY 503 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~-------~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~p~~~~~~~~l~---~~~ 503 (526)
+.+++++|.+.++.++.+-.+. .....+...|-.. .+++.|+..|+.+-+- +..+..+-.+++ ..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3446666555554443222111 1222344444433 6788888888887652 222333333333 334
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|+|.+|.++|++.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5688999999999987543
No 367
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.08 E-value=18 Score=33.06 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCC---CCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFE---ASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
..|.-=.+-|.+..++..|...|.+.+..+ |+. ..|+.=..+-...|++..++.-...++..+|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344444567888899999999998877433 332 556555556667899999999999999999999999998889
Q ss_pred HHHhcCChHHHHHHHHHH
Q 009782 502 IYGNAGRLDDVERVERML 519 (526)
Q Consensus 502 ~~~~~g~~~~A~~~~~~m 519 (526)
++....++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 998888877776655543
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.67 E-value=98 Score=32.04 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHhcCChHHHHHHHHhhcCCCC
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p 457 (526)
+...|++++|++.+ +.+++-|
T Consensus 515 ~~~~g~~~~AL~~i-~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDII-EKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHH-HHTT-S-
T ss_pred HHHcCCHHHHHHHH-HhCCCCC
Confidence 45678888888888 7777777
No 369
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=97 Score=32.00 Aligned_cols=117 Identities=19% Similarity=0.076 Sum_probs=73.2
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 009782 366 HAHSKDHEALIYFEQMERDGVLPDHL--TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443 (526)
Q Consensus 366 ~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 443 (526)
..+|+.++|..+.++|.... .|-.. -.-++.-+|+..|+.....+++.-... ....|+.-+....-++.-..+++
T Consensus 512 ~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChh
Confidence 34889999999999998743 33222 233455678888888777777776655 34456666666666677778888
Q ss_pred HHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 444 EAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
....+. +.+...-++ .+--+|.-+|+-.|+ .+|+.+++-+..
T Consensus 589 ~~~s~V-~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTV-SLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHH-HHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 887777 666433333 222334444555554 456666666554
No 370
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.65 E-value=1.2e+02 Score=33.16 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=80.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWG 463 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~ 463 (526)
-|..+++.+-..+-.+.+.++-..+.+ .++++ ..+++.+.+.....|.+.+|...+ -..||. ....
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHH
Confidence 477788888888999999998888877 35544 456778888888999999997666 235655 5667
Q ss_pred HHHHHHHhcCChHH------------HHH-HHHHHHccCCCC-cchHHHHHHHHHhcCChHHHHHHH
Q 009782 464 ALLYACYLHGNVCM------------GET-AAQKLFELEPDN-EHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 464 ~l~~~~~~~g~~~~------------a~~-~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
.++..++.+|.++. .+. +++..-+-.|-. ...|+.|-.-+...++|.+|-.+.
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 77777888886543 222 233333333332 233555555566889999987754
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.60 E-value=25 Score=25.42 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=35.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChH
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHGNVC 476 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~ 476 (526)
+.|...-..+...+...|++++|++.+.+.+...++. ..-..++..+...|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3466777788889999999999999887888766543 45555666655555543
No 372
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.35 E-value=1e+02 Score=31.99 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhh-CCCCC--ChhhHHHHHHHHH-ccCChHHHHHHHHHHhhhccCCChh-----HHHHHHHHHHhcCC
Q 009782 71 ALDSIIQDLESSVQ-NGITV--QTETFASLLETCY-QLKAVEHGIKLHRLIPTNLLRKNKG-----ISSKLLRLYATFGL 141 (526)
Q Consensus 71 ~~~~a~~~~~~m~~-~~~~~--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~ 141 (526)
-...|+..++...+ ..+.| +..++-.+...+. ...+++.|+..+++.....-.++.. ....++..+.+.+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 34567777777774 33444 2334444555444 6788999999988775433222221 22345566666665
Q ss_pred hhHHHHHHhccccC----CCCc--ccHHHH-HHHHHhcCChHHHHHHHHHHHHcC---CCCCcchHHHHHHHHh--ccCC
Q 009782 142 IDEAHQVFDQMSNR----TAFA--FPWNSL-ISGYAELGEYEDAIALYFQMEEEG---VEPDQFTFPRVLKACA--GLGL 209 (526)
Q Consensus 142 ~~~a~~~~~~~~~~----~~~~--~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~~ll~~~~--~~g~ 209 (526)
.. |...+++..+. +... ..+..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. ..+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 88887765433 1111 223333 333334478999999998876542 2333344455555543 4566
Q ss_pred hHHHHHHHHHHHHhCC---------CCchhHHHHHHHHH--HhcCCHHHHHHHHhhc
Q 009782 210 IRVGEKVHLDAVRFGF---------GFDGFVLNALVDMY--AKCGDIVKARTVFDRI 255 (526)
Q Consensus 210 ~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 255 (526)
.+.+.+.++.+..... .|-..+|..+++.+ ...|+++.+...++++
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777776644322 23455666666654 4667766766665544
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.10 E-value=21 Score=25.46 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHH
Q 009782 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 179 (526)
+.++++...+.|+- +..-...+-.+-...|+.+.|.+++..+. ++| ..|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC--cHHHHHHHHHHHcCchhhhh
Confidence 34556666665532 22222222222234567777777777777 766 56777777777776655443
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.77 E-value=15 Score=32.95 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.+++.....|..+|.+.+|.++.++.+..+| +...+..|+..+...||--.+.+.++++-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667789999999999999988888888 557788888999999997777777776543
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.44 E-value=29 Score=26.12 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc------CCCCcchHHHHHHHHHhcCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFEL------EPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~ 508 (526)
-|..|+..|...|..++|++++.+...- .|........++..+.+.|.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 3566666777777777777777766551 12223333344555555554
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.21 E-value=6.8 Score=21.19 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 466778888888888888777777666543
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.03 E-value=77 Score=29.58 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh---cCChHHHHHHHHHH
Q 009782 444 EAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN---AGRLDDVERVERML 519 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m 519 (526)
.-+.++++++..+|+. ..+..++..+.+..+.+...+.+++++...|.+...|...+..... .-.+++..++|.+.
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3344555555555533 4445555555555555555555666666666655555555544333 22344444444443
No 378
>PRK10941 hypothetical protein; Provisional
Probab=74.02 E-value=27 Score=31.41 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+.+-.+|.+.++++.|++..+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4444555666666666666666666666666555555666666666666655444443
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.50 E-value=1e+02 Score=30.80 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=25.0
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCC--HHHHHHHHHHH-HhcCChHHHHHHHHHH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEAS--PVVWGALLYAC-YLHGNVCMGETAAQKL 485 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 485 (526)
..+.+.|-+..|.++.+-.+...|+ +.....+|..| .+..++.--+++++..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344555566665555333344553 34444444443 3444555555555444
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.43 E-value=35 Score=25.41 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 208 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|. -.+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 356778888877777653 23333333445667888888885554555567777776554 457788888888887776
Q ss_pred HcCCCCcHHHH
Q 009782 288 LNGFDPDPVAI 298 (526)
Q Consensus 288 ~~~~~p~~~~~ 298 (526)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3444444
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.06 E-value=13 Score=27.08 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHhcCChHHHHHHHHHHHccCCC----C-----cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 469 CYLHGNVCMGETAAQKLFELEPD----N-----EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+.||+..|.+.+.+.+..... . ..+...++......|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567777776666666552211 1 12334466667778888888888777653
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.91 E-value=23 Score=27.25 Aligned_cols=41 Identities=10% Similarity=0.286 Sum_probs=22.7
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHh
Q 009782 78 DLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP 118 (526)
Q Consensus 78 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 118 (526)
-++.+..-.+.|++......+++|.+.+++..|.++|+-++
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444555555555666666666666666666555554
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.57 E-value=27 Score=26.87 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
+..+-++.+...++-|++......+++|.+.+|+..|.++|+-+..+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44555666667778999999999999999999999999999988764 4444445555543
No 384
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.51 E-value=65 Score=28.09 Aligned_cols=25 Identities=0% Similarity=-0.197 Sum_probs=17.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
+..--...+++.+|+.+|+++-...
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334456778888888888876643
No 385
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.35 E-value=1.3e+02 Score=31.31 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+.+.|..++-.++| |.. ..+.+-...+|+.+|.+..+.|++++|+.-.
T Consensus 352 ~LlgrKG~leklq~YW--------dV~---~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYW--------DVA---TYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred HHhhccchHHHHHHHH--------hHH---HhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 3456777777766666 221 2234445567778888888888888877433
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=72.31 E-value=1e+02 Score=30.11 Aligned_cols=113 Identities=16% Similarity=0.026 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHc---CC-CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 009782 175 YEDAIALYFQMEEE---GV-EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250 (526)
Q Consensus 175 ~~~a~~~~~~m~~~---~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 250 (526)
.++...++...... |+ ..+......++..+ .|+...+..+++.+...+...+. +...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHH
Confidence 34555555554332 33 44444555554433 68888888887776543211121 11222
Q ss_pred HHhhc---CCCCcccHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 009782 251 VFDRI---GNKDLISYNSMLTGYIH---HGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305 (526)
Q Consensus 251 ~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 305 (526)
++... ...+......++.++.+ .++.+.|+..+..|.+.|..|....-..+..++
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22211 11222345556666655 589999999999999999888876655555544
No 387
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=72.18 E-value=10 Score=34.10 Aligned_cols=58 Identities=10% Similarity=0.236 Sum_probs=39.1
Q ss_pred hcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
+.|+.++|..+|+.++...|+. ..+..+.......++.-+|-++|-+++.+.|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 5677777777777777777744 555555555555667777777777777777776553
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.66 E-value=9.2 Score=32.52 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 449 IVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 449 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++.+...|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 134 a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 134 AERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344455667777777777777777777777777777777666
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.55 E-value=48 Score=29.41 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHh
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASPVVWGALLYACYL 471 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~l~~~~~~ 471 (526)
.+..++++|+.-|++..+..|-+.+ ......++..+.+.|++++.++.|.+.+ ..+-...+.++++.-...
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q ss_pred cCChHHHHHHHHHHHc--cCCCCcchHHH----HHHHHHhcCChHHHHHHHHHHHhC
Q 009782 472 HGNVCMGETAAQKLFE--LEPDNEHNFEL----LIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~--~~p~~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.+.+.-..+|+..++ .+..+...|.- |+..|...|.+.+-.++++++...
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=79 Score=28.44 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=57.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcch-------HHHHHHHHhccCChHHHHHHHHHHH----HhCCCCchhHHHH
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFT-------FPRVLKACAGLGLIRVGEKVHLDAV----RFGFGFDGFVLNA 234 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~ 234 (526)
.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|+...--+...... ...-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3444556666666666666666665555433 3345555566665544433332221 1111222333344
Q ss_pred HHHHHHhc-CCHHHHHHHHhhcCC----CC-----cccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 235 LVDMYAKC-GDIVKARTVFDRIGN----KD-----LISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 235 li~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
|+..+-.. ..++...++.....+ .+ ...-..++..+.+.|.+.+|+.+...+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44433222 223333333322221 00 012234677777888888877765443
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.20 E-value=74 Score=27.77 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchH---HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
.-+..|.+.-++.-|....+++.+|=-.- .+ +.-|.+..+ ..++.+-....++.-+..-...++ +...|+...
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQSR-CA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQSR-CA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHhh-hH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 45667777777877777777776652211 11 122333322 223333344466666666666555 567788888
Q ss_pred HHHHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCChHHHHHHH
Q 009782 409 GERLFSVMVEKYGI-----------SPRVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 409 a~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
|...++.-...+|. .|.+.....++..+ ..+++++|.+++
T Consensus 211 alNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il 261 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKIL 261 (333)
T ss_pred HHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHH
Confidence 88888776654332 24444444444433 234556666555
No 392
>PRK13342 recombination factor protein RarA; Reviewed
Probab=69.85 E-value=1.1e+02 Score=29.73 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhh---CCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 73 DSIIQDLESSVQ---NGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 73 ~~a~~~~~~m~~---~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
+++..+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 444445544432 243 44555555555443 5777777777776654311111 1122222
Q ss_pred Hhccc-cCCCCcccHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 009782 149 FDQMS-NRTAFAFPWNSLISGYAE---LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207 (526)
Q Consensus 149 ~~~~~-~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 207 (526)
+.... ..+.....+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++-..
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 22111 001111234455555554 478888888888888888766654444444444333
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.85 E-value=1.6e+02 Score=31.20 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=57.1
Q ss_pred HhcCChhHHHHHHhccccCCC--C-------cccHHHHHHHH-HhcCChHHHHHHHHHHHHc----CCCCCcchHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTA--F-------AFPWNSLISGY-AELGEYEDAIALYFQMEEE----GVEPDQFTFPRVLK 202 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~--~-------~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~----~~~p~~~t~~~ll~ 202 (526)
....++++|..++.++...-+ + ...|+.|-... ...|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 446788888888876643211 1 02355554333 3457788888877666543 22334445666667
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhH
Q 009782 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231 (526)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 231 (526)
+..-.|++++|..+..+..+..-.-++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 77778888888888877766533334433
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.68 E-value=6.2 Score=36.04 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=81.2
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~ 479 (526)
...|.++.|.+.|-...+. -++....|..-..++.+.+++..|++=+..++.++||. .-|..=..+-...|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 4568899999998888752 34456666677788889999999999988888888877 44554455667789999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..+..+.+++-+ ..+-..|-.+.-+.++.++-...+++.
T Consensus 203 ~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 203 HDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHH
Confidence 999999887654 222344444444555555544444443
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.68 E-value=54 Score=29.41 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHhcCChhHHHHHHhc----cccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh--
Q 009782 132 LLRLYATFGLIDEAHQVFDQ----MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA-- 205 (526)
Q Consensus 132 ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-- 205 (526)
=|++++..+++.+++...-+ -.+..| .....-|-.|.+.+.+..+.++-..-....-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 35667777777776554322 222223 4455556667777777777777666655322222333555554432
Q ss_pred ---ccCChHHHHHH
Q 009782 206 ---GLGLIRVGEKV 216 (526)
Q Consensus 206 ---~~g~~~~a~~~ 216 (526)
-.|.+++|+++
T Consensus 167 VLlPLG~~~eAeel 180 (309)
T PF07163_consen 167 VLLPLGHFSEAEEL 180 (309)
T ss_pred HHhccccHHHHHHH
Confidence 23444444443
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.89 E-value=48 Score=25.83 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=31.5
Q ss_pred HHHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 477 MGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 477 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+..+|+.+.. +....+..|...+..+...|++++|.++++.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 67777777765 44556666888888888888888888888753
No 397
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.73 E-value=79 Score=31.99 Aligned_cols=82 Identities=7% Similarity=-0.042 Sum_probs=55.5
Q ss_pred hcCChHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChH
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP-------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (526)
+..++..+.+.|...+..-|.. .....+--.|....+.+.|.++++++-+.+|.++..-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 4566777777775555433321 233445555667777888888888888888877777777777777788888
Q ss_pred HHHHHHHHH
Q 009782 511 DVERVERML 519 (526)
Q Consensus 511 ~A~~~~~~m 519 (526)
+|.......
T Consensus 446 ~AL~~~~~~ 454 (872)
T KOG4814|consen 446 EALTCLQKI 454 (872)
T ss_pred HHHHHHHHH
Confidence 877766554
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.64 E-value=55 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHc-cCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 456 EASPVVWGALLYACYLHG---NVCMGETAAQKLFE-LEPD-NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 456 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+...+--.+.+++.++. +..+.+.+++.+++ -.|. .......|.-++.+.|+|+++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555566666777777665 46678889999987 3333 3344667788899999999999999988764
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.58 E-value=27 Score=29.68 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=37.8
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
....+.+......+.+.+.-...|++.+|..++.++...|+.++|.+...+....-|
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555555544444444335578888888888888888888888887766666666
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.22 E-value=63 Score=25.82 Aligned_cols=74 Identities=12% Similarity=0.241 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---------CCcccHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN---------KDLISYNSMLTGYIHHGL-LVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
.|.++......++......+++.+.. .+...|..++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44444444445555555554444421 234466666666654444 22345566666666666666666666
Q ss_pred HHHh
Q 009782 302 LANA 305 (526)
Q Consensus 302 l~~~ 305 (526)
+.++
T Consensus 122 i~~~ 125 (145)
T PF13762_consen 122 IKAA 125 (145)
T ss_pred HHHH
Confidence 6555
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.42 E-value=43 Score=32.11 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=28.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHH--------ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 465 LLYACYLHGNVCMGETAAQKLF--------ELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
|++..+-.||+..|++.++.+- +.-+....++..++-+|...++|.+|.+.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444321 112334555666666666666666666666554
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.93 E-value=46 Score=23.77 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=26.5
Q ss_pred hcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHH
Q 009782 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280 (526)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 280 (526)
..|+.+.|.++++.++ .....|...+.++-..|+-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4467777777777777 66667777777777766655443
No 403
>PRK12798 chemotaxis protein; Reviewed
Probab=65.75 E-value=1.3e+02 Score=28.89 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=102.1
Q ss_pred cCChHHHHHHhccCCC----CChhHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHH
Q 009782 340 DGKLDQACWLFDHMPQ----KDVVSWNSIIHA----HSKDHEALIYFEQMERDGVLPDHL----TFVSLLSACAHLGSVK 407 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~----~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~ 407 (526)
.|+-++|.+.+..+.. +....|-.|+.+ -.+..+|+++|++..- ..|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 3555555555555542 233344444444 1333456666665443 334332 2333344567889999
Q ss_pred HHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCC---hHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGL---IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 483 (526)
++..+-.....+|...|-..-| ..+..++.+.++ .+.-..++ ..|.-.-....|..+.+.-.-.|+.+.|.-..+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~l-s~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEIL-SFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHH-HhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9988888888877777754443 334444444442 33333333 333211123788888899999999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHH-----hcCChHHHHHHHHHHHhCC
Q 009782 484 KLFELEPDNEHNFELLIKIYG-----NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~g 523 (526)
+++.+...+ ..-...+..|. -..++++|.+.+..+-...
T Consensus 282 ~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 282 RALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 998876332 22233333332 2446777777766654433
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.17 E-value=9.1 Score=29.74 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=26.7
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 365 i~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
+.++|...+|..+|+.|++.|-.||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45578888899999999999999875 56666543
No 405
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=64.98 E-value=1.9e+02 Score=30.57 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 009782 164 SLISGYAELGEYEDAIALYFQMEE 187 (526)
Q Consensus 164 ~li~~~~~~~~~~~a~~~~~~m~~ 187 (526)
.++.-+.++|+.+.|.+++++-..
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456667788888888888877654
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.31 E-value=61 Score=25.21 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
.+.++|+.|..+ |+-- -+..|......+...|++++|.++|
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555554 4433 2444455555555555555555555
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.95 E-value=74 Score=25.45 Aligned_cols=79 Identities=8% Similarity=0.151 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCC-------CcccHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCcchHHH
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTA-------FAFPWNSLISGYAELGE-YEDAIALYFQMEEEGVEPDQFTFPR 199 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ 199 (526)
..|.++.-....+.+.....+++.+....+ +..+|++++.+..+... ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345566655666666666666665532211 12446666666644444 3344555566665555566666666
Q ss_pred HHHHHhc
Q 009782 200 VLKACAG 206 (526)
Q Consensus 200 ll~~~~~ 206 (526)
++.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6655544
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.69 E-value=1.9e+02 Score=30.03 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChh----h-HHHHHHHHHccCChHHHHHHHHHHhhhccC--CCh--hHHHHH-HHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTE----T-FASLLETCYQLKAVEHGIKLHRLIPTNLLR--KNK--GISSKL-LRLYA 137 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~----~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~l-l~~~~ 137 (526)
...+++.|...+++.....-+++-. . ...++..+.+.+ +..|...++..++.--. ... ..+..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3466888888888765433222221 1 123344444444 44499988887653212 222 222222 22222
Q ss_pred hcCChhHHHHHHhccccC-----CCCcccHHHHHHHHH--hcCChHHHHHHHHHHHHcCC---------CCCcchHHHHH
Q 009782 138 TFGLIDEAHQVFDQMSNR-----TAFAFPWNSLISGYA--ELGEYEDAIALYFQMEEEGV---------EPDQFTFPRVL 201 (526)
Q Consensus 138 ~~g~~~~a~~~~~~~~~~-----~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~---------~p~~~t~~~ll 201 (526)
..++...|.+.++.+... ++....+-.++.+.. +.+..+++.+.++++..... .|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 337999999999877433 222234444444443 45667788888877744221 33456777777
Q ss_pred HHHh--ccCChHHHHHHHHHHHH
Q 009782 202 KACA--GLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 202 ~~~~--~~g~~~~a~~~~~~~~~ 222 (526)
+.++ ..|+++.+...++++.+
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 7665 67777777777666553
No 409
>PHA03100 ankyrin repeat protein; Provisional
Probab=63.52 E-value=1.6e+02 Score=29.24 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=47.2
Q ss_pred hcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChHHHHH
Q 009782 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT--FPRVLKACAGLGLIRVGEK 215 (526)
Q Consensus 138 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~ 215 (526)
..|..+-+..+++.-...+.....-.+.+...+..|. .-.++++.+.+.|..++... -.+.+..++..|+.+-+.-
T Consensus 117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~ 194 (480)
T PHA03100 117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKF 194 (480)
T ss_pred ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHH
Confidence 5666666555555322221111112233444444552 12234444555565443321 1233444555565544333
Q ss_pred HHHHHHHhCCCCchh--------HHHHHHHHHHhcCC--HHHHHHHHhh
Q 009782 216 VHLDAVRFGFGFDGF--------VLNALVDMYAKCGD--IVKARTVFDR 254 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~--------~~~~li~~~~~~g~--~~~A~~~~~~ 254 (526)
+.+.|..++.. .+.+.+...+..|+ .+-+.-+++.
T Consensus 195 ----Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~ 239 (480)
T PHA03100 195 ----LLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY 239 (480)
T ss_pred ----HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence 33445443321 11334444455555 5555555544
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.35 E-value=16 Score=31.43 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
...+.+|.+.|.+++.+++++-|.....|..++..-.+.|+++.|.+-|++..+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34578899999999999999999999999999999999999999999999887654
No 411
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.54 E-value=38 Score=26.96 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChH
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (526)
+.|.++. +.+| ...............|++..|.++.+.++..+|+|..+-.....+|...|.-.
T Consensus 58 ~~A~~~v-~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYV-ELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHH-HHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHH-HHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4555555 6665 22333444556678899999999999999999999998888888888766443
No 412
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.90 E-value=17 Score=35.02 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTF-VSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 446 (526)
+.++.|..++.+.++ +.||...| ..-..++.+.+++..|..=+..+.+. .|+ ...|..=..++.+.+.+.+|.
T Consensus 18 ~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred chHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHHHHHH
Confidence 455778888888877 67766544 33336778888888888777776653 343 223333334445556666777
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHh
Q 009782 447 SMIVEKMEFEASPVVWGALLYACYL 471 (526)
Q Consensus 447 ~~~~~~~~~~p~~~~~~~l~~~~~~ 471 (526)
..|+......|+..-....+.-|-+
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 7776666778877777666666544
No 413
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.88 E-value=1.9e+02 Score=29.51 Aligned_cols=179 Identities=17% Similarity=0.071 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHH---HHhcCChhHHHHHHhcccc-------CCCCcccHHHHHHHHHhcC---
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRL---YATFGLIDEAHQVFDQMSN-------RTAFAFPWNSLISGYAELG--- 173 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~li~~~~~~~--- 173 (526)
...|.+.++...+.|. ........++.. ++...+.+.|..+|+.... .+ .+.+.+-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCc
Confidence 4568888888877662 222222222222 3456688999999887755 22 2355667777777643
Q ss_pred --ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCCHHHH
Q 009782 174 --EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG-LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA--KCGDIVKA 248 (526)
Q Consensus 174 --~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A 248 (526)
+.+.|+.++...-+.|. |+...+...+.-... -.+...|.++|....+.|. ++...+-.++.... ...+.+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56778888888887763 444444333332222 2457788889988888883 23322222222211 33467788
Q ss_pred HHHHhhcCCCCccc-HHHHHH--HHHhCCChHHHHHHHHHHHHcC
Q 009782 249 RTVFDRIGNKDLIS-YNSMLT--GYIHHGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 249 ~~~~~~~~~~~~~~-~~~li~--~~~~~g~~~~a~~~~~~m~~~~ 290 (526)
..++++..+.+... ...+.. .+.. +.++.+.-.+..+.+.|
T Consensus 384 ~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 384 FAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 88887776655321 222221 2222 56666665555555544
No 414
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.75 E-value=23 Score=31.99 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=45.1
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
..+.|+.++|..+|+.++.+.|+++.+...++......++.-+|-+++-+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 4578999999999999999999999999999888888888888888776543
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.46 E-value=19 Score=32.62 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=28.1
Q ss_pred CCCCcch-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 009782 190 VEPDQFT-FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229 (526)
Q Consensus 190 ~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 229 (526)
+.||..+ |+..|+...+.||+++|++++++.++.|..--.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar 292 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSAR 292 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Confidence 4455554 467778888888888888888888887755433
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.20 E-value=32 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=18.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 236 (526)
.+.|-++++..+++.|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666655555555444
No 417
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.09 E-value=1.2e+02 Score=26.58 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
++.++...|+.+.|..++ +..+-.+.. .....++.. ..++.+.+|..+.+.
T Consensus 114 Il~~L~~~~~~~lAL~y~-~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYL-RAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred HHHHHHHCCChhHHHHHH-HhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 444555555555555555 444322222 222222222 444555555544443
No 418
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=59.66 E-value=2.5e+02 Score=30.21 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=62.6
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 009782 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410 (526)
Q Consensus 331 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 410 (526)
+++++++++.|..-.-.+.++.-.+.|.. .-..+.+.-.+.|.++...=-.-|..++..-...+...|++..+.
T Consensus 1178 ~tli~AL~kKg~a~ak~e~l~g~~e~dae------ee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~l 1251 (1304)
T KOG1114|consen 1178 DTLIDALVKKGEAFAKYEALKGHKEQDAE------EELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRAL 1251 (1304)
T ss_pred HHHHHHHHHhhhHHhhhhhhcccccccch------hhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHH
Confidence 57788888776543333333332222211 011223444555555554222234455555566666778888999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 009782 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
+++.++.+..|-.++...|..++..+...|.-
T Consensus 1252 K~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1252 KALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 98888888767788888887777777666654
No 419
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.55 E-value=2e+02 Score=28.56 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=106.2
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009782 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202 (526)
Q Consensus 123 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 202 (526)
+.|.....+++..++.+-+..-.+.+..+|..-+.+-..|..++..|..+ .-++-..+|+++.+..+ |.....--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 45666677888888888888888888888877766667788889988888 56777888888877543 3344444444
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----cccHHHHHHHHHh
Q 009782 203 ACAGLGLIRVGEKVHLDAVRFGFGFD-----GFVLNALVDMYAKCGDIVKARTVFDRIGNKD-----LISYNSMLTGYIH 272 (526)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~ 272 (526)
.+...++...+...|..+...-++.. ..+|.-+...- ..+.+....+...+...+ ...+..+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 44445788888888877766543211 12344333321 345666666665555432 2444555566777
Q ss_pred CCChHHHHHHHHHHHHc
Q 009782 273 HGLLVEAFDIFRGMILN 289 (526)
Q Consensus 273 ~g~~~~a~~~~~~m~~~ 289 (526)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 88888888888876654
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.71 E-value=93 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=23.7
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 473 (526)
+-.|.+.|.+++|.+++++.++ +|+......-+....+.+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 4457777778888777755555 666544444444444333
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.70 E-value=59 Score=27.10 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=33.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
.+..|.+.|.+++|.+++++..+ +|++...-.-|..+-...+.+....+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 44578999999999999999998 77766644444444444444444433
No 422
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.65 E-value=39 Score=21.48 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=16.5
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCHHH
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVV 461 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 461 (526)
+.-++.+.|++++|.+.....+...|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 444556666666666666555566665533
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.63 E-value=1.6e+02 Score=28.24 Aligned_cols=16 Identities=6% Similarity=0.140 Sum_probs=8.1
Q ss_pred hcCChHHHHHHhccCC
Q 009782 339 KDGKLDQACWLFDHMP 354 (526)
Q Consensus 339 ~~g~~~~A~~~~~~~~ 354 (526)
+.+++..|.++|+.+.
T Consensus 143 n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 143 NRYDYGAAARILEELL 158 (379)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4555555555554443
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.17 E-value=44 Score=20.66 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 009782 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 303 (526)
..+.|-.+++...+++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777777777777766666655554
No 425
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.13 E-value=2.7e+02 Score=29.70 Aligned_cols=304 Identities=12% Similarity=0.048 Sum_probs=143.8
Q ss_pred HHHHHHhcCChhHHHHHHhccccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC
Q 009782 132 LLRLYATFGLIDEAHQVFDQMSNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209 (526)
Q Consensus 132 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 209 (526)
+=+.|.+.|++++|+++-..- |+. .++-.-...+.+.+++..|-+++.++.+ .|..+.--+....+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 345577788888888775543 211 2344445667777888888888888743 24444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHH-HHHHH
Q 009782 210 IRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF-RGMIL 288 (526)
Q Consensus 210 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~ 288 (526)
.+ +++.|-.=+=..++|...+-..++..+.-. --++-+.+|..+|...-...-. ..+...+.| ..+..
T Consensus 432 ~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLle----l~L~~Ln~l~~~de~~~en~~~------~~~~~~re~~~~~~~ 500 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLE----LYLEQLNDLDSTDEEALENWRL------EYDEVQREFSKFLVL 500 (911)
T ss_pred HH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHH----HHHHHHhcccccChhHHHHHHH------HHHHHHHHHHHHHHh
Confidence 44 333222111122344444333333222211 0011111222111111000000 111121112 22233
Q ss_pred cCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc
Q 009782 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368 (526)
Q Consensus 289 ~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 368 (526)
.....|..|...++...|+.+....+-..+.+ |..++..+...|.+++|++++..-..+....--+.+--.
T Consensus 501 ~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~ 571 (911)
T KOG2034|consen 501 HKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELIT 571 (911)
T ss_pred hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHh
Confidence 34456666777777777887777777666554 367888999999999999998776443322111111111
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG---SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 445 (526)
-...+....+..+.. .-.......++..+.+.+ ....+..+++-.... -..-++..++.++..|++..+ +..
T Consensus 572 ~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~-l~~~~~~ihn~ll~lya~~~~-~~l 646 (911)
T KOG2034|consen 572 HSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEV-LGMTNPAIHNSLLHLYAKHER-DDL 646 (911)
T ss_pred cCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHh-ccCcCHHHHHHHHHHhhcCCc-cch
Confidence 122223333322222 222233344455555442 333444444444333 223367778888877766544 333
Q ss_pred HHHHHhhcCCCCCH--HHHHHHHHHHHhcC
Q 009782 446 YSMIVEKMEFEASP--VVWGALLYACYLHG 473 (526)
Q Consensus 446 ~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 473 (526)
.-.+ +..+..++. .-..-.++.|.+.+
T Consensus 647 l~~l-e~~~~~~~~~~YDl~~alRlc~~~~ 675 (911)
T KOG2034|consen 647 LLYL-EIIKFMKSRVHYDLDYALRLCLKFK 675 (911)
T ss_pred HHHH-HHHhhccccceecHHHHHHHHHHhC
Confidence 3333 333333332 22244455555544
No 426
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.11 E-value=2.3e+02 Score=28.94 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHccCChHHHHHHHHHHhh-------hccCCChhHHHHHHHHHHhcC
Q 009782 71 ALDSIIQDLESSVQNGITVQTETFASLLET---CYQLKAVEHGIKLHRLIPT-------NLLRKNKGISSKLLRLYATFG 140 (526)
Q Consensus 71 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g 140 (526)
....+.+.++.....|.. ........+.. ....+|.+.|...++.+.+ .| ......-+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 367889999998888743 22222222222 4467799999999998877 45 3335566777776643
Q ss_pred -----ChhHHHHHHhccccCCCCcccHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh--ccCCh
Q 009782 141 -----LIDEAHQVFDQMSNRTAFAFPWNSLISGYAE---LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA--GLGLI 210 (526)
Q Consensus 141 -----~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~g~~ 210 (526)
+.+.|..++...-..+.....| .+...+.. ..+...|.++|...-+.|.. +..-+..++-... ...+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~-~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQY-LLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHH-HHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 5677999998876664422222 22222222 24678999999999988843 2222222222111 33478
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 211 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+.|..++....+.|........ ..+..+.. ++++.+.-.+..+
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHH
Confidence 8999999999888833223322 23333333 6666555544433
No 427
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.36 E-value=1.7e+02 Score=27.27 Aligned_cols=118 Identities=9% Similarity=0.036 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHh---cCChHHHHHHH
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAE---LGEYEDAIALY 182 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~---~~~~~~a~~~~ 182 (526)
.+.-+.+++..++.. +.+...+..+|..+.+..+.++..+.++++....|+ ...|...|..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 455667888888774 577788888889888888999999999998887664 3567777766554 23466666666
Q ss_pred HHHHHc------CC----CCCcch-------HHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 183 FQMEEE------GV----EPDQFT-------FPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 183 ~~m~~~------~~----~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
.+..+. +. .+-..+ +.-+...+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554432 11 001111 22222233467777777777777777664
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.32 E-value=84 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEE 187 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 187 (526)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3478888888888888888888887766
No 429
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.70 E-value=2.2e+02 Score=28.00 Aligned_cols=146 Identities=13% Similarity=0.153 Sum_probs=85.0
Q ss_pred cCCchHHHHHHHHHHHCC-CCCC--HH-----HHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCchhHH--HHHHHHH
Q 009782 368 HSKDHEALIYFEQMERDG-VLPD--HL-----TFVSLLSA-CAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLY 436 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~-~~p~--~~-----~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~ 436 (526)
-|+..+|++-+.+|.+.- -.|. .. ....++.. |+..+-++.|+.-|..+.+. --.-|...+ ..+.-.|
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHH
Confidence 367777777777776621 2233 11 12233333 44567888888888887765 333344333 3455668
Q ss_pred HhcCChHHHHHHHHhhcCCCCCHHH------HHHH--HHH--HHhcCChHHHHHHHHHHHccCCC------CcchHHHHH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEASPVV------WGAL--LYA--CYLHGNVCMGETAAQKLFELEPD------NEHNFELLI 500 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p~~~~------~~~l--~~~--~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~ 500 (526)
.+.|+.++-.+++ +.++- |+..+ -+.+ +.+ ....+++.+|...+.+.+++... .......|+
T Consensus 415 L~~~~~ed~y~~l-d~i~p-~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 415 LRIGDAEDLYKAL-DLIGP-LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHhccHHHHHHHH-HhcCC-CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 8888888877777 66652 21111 1111 122 24678899999988888875411 122344566
Q ss_pred HHHHhcCChHHHHHHH
Q 009782 501 KIYGNAGRLDDVERVE 516 (526)
Q Consensus 501 ~~~~~~g~~~~A~~~~ 516 (526)
.+....|+..++.+..
T Consensus 493 ~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHhcchHHHHhcc
Confidence 6777777777776543
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.18 E-value=1.8e+02 Score=26.87 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=0.0
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 341 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
++.+....+++.+.+.+..-|-..+..-+..+--..+++.|.+ .+...+++-.+..+.+.+..
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~-----------------~neeki~eld~~iedaeenl 98 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKK-----------------ANEEKIKELDEKIEDAEENL 98 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHhc
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM------EFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD-- 491 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-- 491 (526)
|-.--...+.....-|++.|+-+.|.+.+.+.+ |.+-|. .+.-.+.-.|..+.-+.+-++..+.+.+.+.+
T Consensus 99 GE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 99 GESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHH
Q 009782 492 ---NEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 492 ---~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
...+|..+-..-.+ ++.+|..+|
T Consensus 179 RrNRlKvY~Gly~msvR--~Fk~Aa~Lf 204 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVR--NFKEAADLF 204 (393)
T ss_pred hhhhHHHHHHHHHHHHH--hHHHHHHHH
No 431
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.08 E-value=83 Score=23.08 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW 462 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 462 (526)
..++.++++..+ +....+-....|.-.|.+.|+.+.|.+-|+..-..-|...+|
T Consensus 55 ~le~~~ek~~ak-~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 55 ALEKYLEKIGAK-NGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHhhc-CCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 334455555444 322222333445556677777777777775555556655444
No 432
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=52.73 E-value=96 Score=24.03 Aligned_cols=92 Identities=10% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHhhh-ccCC-ChhHHHHHHHHHHhcCChhHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTN-LLRK-NKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a 145 (526)
..++.+|+..++...+... .+.. ....+|+.+.- -++.+.+++....+. |+.. +..+-..+++...+.|-++..
T Consensus 2 ~~nf~kAl~~L~~a~~~~~-~~~~~~~~g~IqrFE~--t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~ 78 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDL-TNDITIIDGAIQKFEF--TFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDE 78 (123)
T ss_pred HHHHHHHHHHHHHHHhcCc-cchHHHHHHHHHHhhh--HHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCH
Confidence 4577788877777765521 1222 34455544432 356666666665543 5432 244456677777778877766
Q ss_pred HHHHhccccCCCCcccHH
Q 009782 146 HQVFDQMSNRTAFAFPWN 163 (526)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~ 163 (526)
...++.+..++..+.+|+
T Consensus 79 ~~W~~ml~~RN~tsHtYd 96 (123)
T TIGR01987 79 SLWIAMLDDRNITSHTYD 96 (123)
T ss_pred HHHHHHHHHhCcccccCC
Confidence 656665556666556664
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.24 E-value=1.8e+02 Score=26.18 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--
Q 009782 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA-- 305 (526)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-- 305 (526)
|......+...|.+.|++.+|+..|-.-..++...+..++......|...++ |...-..++.-+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~yL~l 154 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQYLCL 154 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHHHHHh
Confidence 5667788889999999999998877654443333332233322222322222 223333334333
Q ss_pred hhhHHHHHHHHHHHHh
Q 009782 306 SLLRIGAQVHGWVLRR 321 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~ 321 (526)
++...|...++...+.
T Consensus 155 ~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 155 GNLRDANELFDTFTSK 170 (260)
T ss_dssp TBHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777777666544
No 434
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.19 E-value=52 Score=29.43 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=37.5
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..|.++++++.|.....+.+...| |+.-+.--+..|.+.|....|++-++...+.-|+++.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 445666666666666656666655 3344555555666666666666666666666666544
No 435
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.00 E-value=2e+02 Score=26.62 Aligned_cols=55 Identities=5% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
.|.-+..+.|+..+|.+.++.+.+.+.+..-......|+.++....-+.+...++
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445677777777777777654221112233445666666655555555544
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.98 E-value=74 Score=28.31 Aligned_cols=56 Identities=9% Similarity=-0.031 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+...|...|++++|.++++.+...... ...+...+..++.+.|+.++...+.=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555556666666666555432111 1223455666666777777766654444
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.85 E-value=1.8e+02 Score=26.14 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=73.5
Q ss_pred hcCChHHHHHHhccCCCCChhHHHHHHHhcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHH
Q 009782 339 KDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK-VGERLF 413 (526)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~ 413 (526)
+++++++|.+++..-. ..+.-+++..- +.-+++-..+.+..+|......++..+...+.-+ +-..+.
T Consensus 2 ~~kky~eAidLL~~Ga--------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi 73 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA--------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFI 73 (260)
T ss_dssp HTT-HHHHHHHHHHHH--------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHH
T ss_pred ccccHHHHHHHHHHHH--------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 4566777776654211 11112333322 3334444455667777766566665554433211 112222
Q ss_pred HHHHH--hcCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 414 SVMVE--KYGISP--RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 414 ~~~~~--~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
+.+.+ +.+-.| ++.....+...|.+.|++.+|..-| ..+.+|+...+..++......|...++
T Consensus 74 ~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf--l~~~~~~~~~~~~ll~~~~~~~~~~e~----------- 140 (260)
T PF04190_consen 74 KAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF--LLGTDPSAFAYVMLLEEWSTKGYPSEA----------- 140 (260)
T ss_dssp HHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH--HTS-HHHHHHHHHHHHHHHHHTSS--H-----------
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH--HhcCChhHHHHHHHHHHHHHhcCCcch-----------
Confidence 22211 113333 6778888889999999999998877 122233333332344433333433322
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.......+--|...|+...|...++...+
T Consensus 141 ---dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ---DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ---HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11122344456666777777777666554
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.80 E-value=1.1e+02 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 009782 478 GETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 478 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
...+|+.+.+ +....+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666654 445556668888888888999999988876
No 439
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.81 E-value=47 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=6.4
Q ss_pred HHHHhcCChHHHHHH
Q 009782 467 YACYLHGNVCMGETA 481 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~ 481 (526)
..+-..|++++|+.+
T Consensus 9 ~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 9 YNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHTT-HHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 334444444444444
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.58 E-value=2.4e+02 Score=27.14 Aligned_cols=56 Identities=4% Similarity=-0.075 Sum_probs=39.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 009782 167 SGYAELGEYEDAIALYFQMEEEGVEPDQF--TFPRVLKACA--GLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 223 (526)
..+...+++..|.++|+.+... ++++.. .|..+..+|. ...++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999886 555554 3445555554 456788888888877654
No 441
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.97 E-value=23 Score=27.62 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 204 (526)
.-..|.-.+|-.+|..|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677889999999999988874 66666544
No 442
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.52 E-value=3.2e+02 Score=28.66 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCc---hhHHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 314 VHGWVLRRGVEWD---LCIANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 314 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
++++|...--.|+ ..+...++-.|....+++...++.+.+++
T Consensus 185 ~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 185 YLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 3444444333333 33444566667777777777777776664
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.38 E-value=1.8e+02 Score=25.45 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=34.7
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchH---HHHHHHHhccCChHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTF---PRVLKACAGLGLIRVGEK 215 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~ 215 (526)
.+++++|.+.+-.- ...+.--.-++.++...|+.+.|+.+++.+. |+..+. ..++.. ...+.+.+|..
T Consensus 91 ~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~-----p~l~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 91 HGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVG-----PPLSSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred hHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcC-----CCCCCHHHHHHHHHH-HHcCCHHHHHH
Confidence 45566666555322 1111222345666666666666666666543 222222 222222 44466666665
Q ss_pred HHHHHH
Q 009782 216 VHLDAV 221 (526)
Q Consensus 216 ~~~~~~ 221 (526)
+-+...
T Consensus 162 ~~R~~~ 167 (226)
T PF13934_consen 162 FQRSYP 167 (226)
T ss_pred HHHhCc
Confidence 554443
No 444
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=49.19 E-value=2.3e+02 Score=26.54 Aligned_cols=130 Identities=12% Similarity=0.110 Sum_probs=74.5
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCC--c--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSK--D--HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 407 (526)
-+.+.+++.++-+.+..+-+.+..-......++..++-. . .-+..+++.+... ||......++++........
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 467888888888777777666666444455566666322 2 2255555555554 89999999999998877766
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHH-HHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHYACMV-NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 466 (526)
.....++...+. .-..+......+. ++.....+.+.+..++ +.+-..++...|+.+.
T Consensus 248 ~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fl-e~LA~~~~~~lF~qlf 305 (340)
T PF12069_consen 248 LVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFL-ERLAQQDDQALFNQLF 305 (340)
T ss_pred HHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHH-HHHHcccHHHHHHHHH
Confidence 666656666654 3333444433332 2222233434444444 5554444444444443
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.07 E-value=42 Score=30.50 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=29.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 009782 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299 (526)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 299 (526)
-|+.-|..-.+.||.++|++++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35678888888888888888888888888766555553
No 446
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=48.99 E-value=1.1e+02 Score=23.03 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=19.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYGISPR 425 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 425 (526)
..+...|+.-+|+++.+++...+|-..+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 3456678888888888888776444433
No 447
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=3.7e+02 Score=28.73 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=38.1
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChH
Q 009782 202 KACAGLGLIRVGEKVHLDAVRFGFGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277 (526)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 277 (526)
+.|...|++++|.++-+. +|+. .++..-.+.|.+.+++..|-+++-++ ...|..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH
Confidence 445566666666655322 2332 23334455667777888888887776 334555555556565555
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.01 E-value=50 Score=21.79 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=15.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVE 418 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 418 (526)
--..++.++...|++++|.++++.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334456666666666666666666544
No 449
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.75 E-value=1.9e+02 Score=25.20 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---chhHH--HHHHHHHHhcCChHHHHHHHHhhc----CCC
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP---RVEHY--ACMVNLYGRAGLIDEAYSMIVEKM----EFE 456 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 456 (526)
+.+...-++.|+--|.-...+.+|.+.|..-. |+.| |..++ ..-|......|+.++|++...+.- ..+
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 66777777787777777777777776665543 6666 33333 455777788999999998883332 222
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHHcc-CCCCcchHHHHHHHH
Q 009782 457 ASPVVWGALLY--ACYLHGNVCMGETAAQKLFEL-EPDNEHNFELLIKIY 503 (526)
Q Consensus 457 p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~ 503 (526)
.+...+-.... -..+.|..++|+++++.=+.. .+.+...+..+=+++
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 22222222222 246788888888888775543 344444454444443
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.73 E-value=58 Score=21.49 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=2.5
Q ss_pred ccCChHHH
Q 009782 206 GLGLIRVG 213 (526)
Q Consensus 206 ~~g~~~~a 213 (526)
..|++++|
T Consensus 35 qlg~~~~a 42 (62)
T PF14689_consen 35 QLGKYEEA 42 (62)
T ss_dssp HTT-HHHH
T ss_pred HCCCHHHH
Confidence 33333333
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.59 E-value=1.2e+02 Score=23.52 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHH
Q 009782 410 ERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
.++|..|..+ |+--. ...|......+-..|++.+|.++|
T Consensus 83 ~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 83 RELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444443 33332 233344444444555555555544
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.24 E-value=99 Score=24.79 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC
Q 009782 77 QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141 (526)
Q Consensus 77 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 141 (526)
++.+.+.+.|.++++. -..+++.+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3455666778775443 445667777777778888888888887755555444444666666663
No 453
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.04 E-value=2.6e+02 Score=27.33 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 174 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.+++-.++++.+.+.| .+| ...+-+..|.+.+++++|...+++-.+.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhc
Confidence 3555666666666654 223 2233456666677777777666665553
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.80 E-value=2.8e+02 Score=26.61 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEE--GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
..+.-+.+.|...|+++.|++.|.+.+.- ..+-....|..+|......|++..+.....+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34677778888888888888888885542 0111223455556666667777766666655554
No 455
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.03 E-value=78 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=22.2
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCCh
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 175 (526)
..+.+.+.++++.++.+|+ .+|..+..++-..|..
T Consensus 43 ~tr~~q~~~LLd~L~~RG~--~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 43 GSRRDQARQLLIDLETRGK--QAFPAFLSALRETGQT 77 (84)
T ss_pred CCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCch
Confidence 3456667777777777766 5666666666655543
No 456
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.49 E-value=3.1e+02 Score=26.71 Aligned_cols=362 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC-
Q 009782 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG- 208 (526)
Q Consensus 130 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g- 208 (526)
|-++.-|...|+..+|-+..+++...- ......-+++...+.-..|..+.-.+...+...+..+-+.+.+++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsf---fhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~ 294 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSF---FHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGG 294 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcc
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHH
Q 009782 209 -------LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 209 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
+...|...|+......+.-+.---+++-..-...|+.+. .+.|++ ....+|+-|...|+..+..+
T Consensus 295 slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~ 366 (645)
T KOG0403|consen 295 SLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIR 366 (645)
T ss_pred ccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHH
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHh--hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChH-------------HH
Q 009782 282 IFRGMILNGFDPDPVAISSILANA--SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD-------------QA 346 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-------------~A 346 (526)
.++++-.....|-..-+..-+.-- +.-.+...++-.-+...+-++..+-+.+...+-...+.. -|
T Consensus 367 ~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlA 446 (645)
T KOG0403|consen 367 SLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLA 446 (645)
T ss_pred HHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHH
Q ss_pred HHHhccCCCC------------------ChhHHHHHHHhcCCchHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHH
Q 009782 347 CWLFDHMPQK------------------DVVSWNSIIHAHSKDHEALIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVK 407 (526)
Q Consensus 347 ~~~~~~~~~~------------------~~~~~~~li~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~ 407 (526)
..+.+.+..| ....-..|+.+-.-.+.-++.|.-= -...+.--..-...|+.-|...|+..
T Consensus 447 RAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~Gdis 526 (645)
T KOG0403|consen 447 RAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDIS 526 (645)
T ss_pred HHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchH
Q ss_pred HHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--------ChHH
Q 009782 408 VGERLFSVMVEKYGISP--RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG--------NVCM 477 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~~~~ 477 (526)
+|.+.++++ |++- ....+.+++.+.-+.|+-..-+.++++.. .-...|-+.+-.+|.+.. ++..
T Consensus 527 EA~~CikeL----gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf--~sglIT~nQMtkGf~RV~dsl~DlsLDvPn 600 (645)
T KOG0403|consen 527 EACHCIKEL----GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF--KSGLITTNQMTKGFERVYDSLPDLSLDVPN 600 (645)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--hcCceeHHHhhhhhhhhhccCcccccCCCc
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
|.+.|+...+....+...+..|-..+-..++
T Consensus 601 a~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 601 AYEKFERYVEECFQNGIISKQLRDLCPSRLR 631 (645)
T ss_pred HHHHHHHHHHHHHHcCchhHHhhhcchhhhc
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.21 E-value=1.3e+02 Score=24.06 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009782 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG 243 (526)
Q Consensus 181 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 243 (526)
+.+.+++.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445555666655443 33456666666666777777777777665555444333444444444
No 458
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.86 E-value=1.5e+02 Score=26.83 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=35.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC--CCCcccHHHHHHHHHh---
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR--TAFAFPWNSLISGYAE--- 171 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~--- 171 (526)
-|++++..+++.+++...-+--+.--+..+.+...=|-.|.+.|++..+.++-..-... +.....|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 34555555555554442222211111111222222333455555555555544332221 1111235554444433
Q ss_pred --cCChHHHHHHH
Q 009782 172 --LGEYEDAIALY 182 (526)
Q Consensus 172 --~~~~~~a~~~~ 182 (526)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 36666666555
No 459
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.51 E-value=3.4e+02 Score=27.05 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=53.1
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 373 EALIYFEQME-RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 373 ~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
+..+.++... ..|+..+......+.. ...|+...|+.+++.+... + ....++..+ . +
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~-~--~~~it~~~V-------------~----~ 241 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVF-T--DSKLTGVKI-------------R----K 241 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHh-C--CCCcCHHHH-------------H----H
Confidence 3444455443 3567666666655553 3447888888888776532 1 111122111 1 2
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 452 KMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 452 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
.++. .+...+..++.+....+....|+.++.++++.+-+
T Consensus 242 ~lg~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d 280 (484)
T PRK14956 242 MIGY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQD 280 (484)
T ss_pred HhCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Confidence 2232 24455566666666666667788888888876544
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.50 E-value=1.2e+02 Score=21.88 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=10.1
Q ss_pred HHHhcCChHHHHHHHHHHHc
Q 009782 468 ACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~ 487 (526)
.....|+.++|...++++++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555544
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.97 E-value=1.1e+02 Score=27.19 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHH
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGI----SPRVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
.+..-|...|++++|.++|+.+...+.- .+...+...+..++.+.|+.++.+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444455556666666665555432211 112333344444444555555544443
No 462
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.75 E-value=80 Score=20.87 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=19.9
Q ss_pred ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH-----HhcCChhHHHHH
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY-----ATFGLIDEAHQV 148 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~g~~~~a~~~ 148 (526)
..|++=+|.++++.+=.....+....+..+|... .+.|+...|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4455555555555553321122333444444332 234555555544
No 463
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.61 E-value=3.5e+02 Score=26.77 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=63.9
Q ss_pred hccCCHHHHHHHHHHHH--HhcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhc---------CCCCCH-----
Q 009782 401 AHLGSVKVGERLFSVMV--EKYGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKM---------EFEASP----- 459 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~--~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~p~~----- 459 (526)
.-.|++.+|.+++...- +..|...+ -..|+.|.-.+.+.|.+.-+..+|.+++ |.+|..
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34577777776654321 00121111 1223444444555566665555554444 223321
Q ss_pred -----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 460 -----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 460 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
.....+.-.|...|+.-.|.+.|.+.....-.+|..|-.|..+|...
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 23344566788899999999999999988877888899999888754
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.55 E-value=2.7e+02 Score=25.56 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
++++.|.+.++.|.-..|.-+.-.+.+.-.+..+..+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555566666666665555555555566666666666553
No 465
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=42.34 E-value=1.6e+02 Score=22.85 Aligned_cols=58 Identities=10% Similarity=0.009 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
..+-.++.-++.=.|..++|.+++ +..+..+.- ..-..++..|.+..+-++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL-~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELL-SKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344556666666677777777766 666555544 2234455666666555555444333
No 466
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.78 E-value=2.2e+02 Score=24.30 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhcCChHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-----EFEASPVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a 478 (526)
+.|.+.|-.+... +.--++.....|...|. ..+.++|..++.+.+ +..+|+..+.+|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 5666666666544 33345666666665555 567777877775655 2256677888888888888887766
No 467
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.69 E-value=1.3e+02 Score=21.51 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccc
Q 009782 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153 (526)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 153 (526)
++|+.....|+..|+.+|..++..+.-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666555555555556655553
No 468
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=40.98 E-value=94 Score=27.86 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..+-.++.+.++++.|....++.+.++|.++.-+.--+-+|.+.|-+.-|.+-+...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 334456777778888888888888888887776777777777777777777665553
No 469
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=3.7e+02 Score=26.58 Aligned_cols=287 Identities=15% Similarity=0.028 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHhhhc--cC-CChhHHHHHHHHHHhcCChhHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNL--LR-KNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~--~~-~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
++.|..+.+.+...- ..--.++..+.+.+.... .+..+..+++..++.. ++ ..-.....|+....-..++..|.+
T Consensus 70 LekA~~i~~~ip~fy-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~e 148 (629)
T KOG2300|consen 70 LEKAWLISKSIPSFY-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALE 148 (629)
T ss_pred HHHHHHHHcccccHH-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHH
Confidence 444444444443221 112345666777777655 7888999998887643 22 122233446666777889999999
Q ss_pred HHhccccC-CCCcccHHHHHHH------HHhcCChHHHHHHH---HHHHHcCCCCCcch------HHHH--HHHHhccCC
Q 009782 148 VFDQMSNR-TAFAFPWNSLISG------YAELGEYEDAIALY---FQMEEEGVEPDQFT------FPRV--LKACAGLGL 209 (526)
Q Consensus 148 ~~~~~~~~-~~~~~~~~~li~~------~~~~~~~~~a~~~~---~~m~~~~~~p~~~t------~~~l--l~~~~~~g~ 209 (526)
++.--... ++....|.-++.. .....+..+..++. .+|.+. ..+|..- |-.. +.-|...|+
T Consensus 149 lLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq 227 (629)
T KOG2300|consen 149 LLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQ 227 (629)
T ss_pred HHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 96543222 3322334333322 22234544555544 444443 4455432 2122 223456788
Q ss_pred hHHHHHHHHHHHHh---CC------------CCchhHHHHHHH----HH---------HhcCCHHH-------HHHHHhh
Q 009782 210 IRVGEKVHLDAVRF---GF------------GFDGFVLNALVD----MY---------AKCGDIVK-------ARTVFDR 254 (526)
Q Consensus 210 ~~~a~~~~~~~~~~---g~------------~~~~~~~~~li~----~~---------~~~g~~~~-------A~~~~~~ 254 (526)
...+...++++++. +- .|....+..+.+ ++ .-.|-+++ |+...++
T Consensus 228 ~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ek 307 (629)
T KOG2300|consen 228 VRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEK 307 (629)
T ss_pred hhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 88888888777643 11 111111111111 00 01233444 4444445
Q ss_pred cCCCC--cc--------cHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCcH--HH-----HHHHHHHh----hhhHHHH
Q 009782 255 IGNKD--LI--------SYNSMLTGYIHHGLLVEAFDIFRGMILNG-FDPDP--VA-----ISSILANA----SLLRIGA 312 (526)
Q Consensus 255 ~~~~~--~~--------~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~--~~-----~~~ll~~~----~~~~~a~ 312 (526)
.++.| .. +...++.+-.-.|++.+|++-+.+|.+.- -.|.. .. ...++.-+ +-.+.|.
T Consensus 308 lkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe 387 (629)
T KOG2300|consen 308 LKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAE 387 (629)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHH
Confidence 55544 22 22233344455799999999998888752 23442 11 11222222 5566666
Q ss_pred HHHHHHHHhCCCCchhHH--hHHHHHHHhcCChHHHHHHhccCCCCChhH
Q 009782 313 QVHGWVLRRGVEWDLCIA--NSLIVVYSKDGKLDQACWLFDHMPQKDVVS 360 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 360 (526)
.-|....+.-...|...+ ..+.-.|.+.|+-+.-.++++.+.-++..+
T Consensus 388 ~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s 437 (629)
T KOG2300|consen 388 FHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNS 437 (629)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc
Confidence 666665554433343332 234566777888777777777776554433
No 470
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.80 E-value=3e+02 Score=25.48 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCCC----CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 69 LQALDSIIQDLESSVQNGI----TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+..+.|.+.++.+...+. ..++.....++....+.|+.+....+++.... ..+......++.+++...+.+.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 143 PECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHH
T ss_pred hhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHH
Q ss_pred HHHHHhccccCC-CCcccHHHHHHHHHhcCCh--HHHHHHHHH
Q 009782 145 AHQVFDQMSNRT-AFAFPWNSLISGYAELGEY--EDAIALYFQ 184 (526)
Q Consensus 145 a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~--~~a~~~~~~ 184 (526)
..++++.....+ ....-...++.++...+.. +.+++.+..
T Consensus 220 ~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 220 LKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 471
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.45 E-value=2.9e+02 Score=25.17 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 009782 377 YFEQMERDG--------VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448 (526)
Q Consensus 377 ~~~~m~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 448 (526)
+++-+-+.| ++-|...++.++ --+...+++-.+-+++..+..|-.--...+..+.+.|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~--kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLL--KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHH--HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHhhc------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 009782 449 IVEKM------EFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 449 ~~~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
..+.+ |.+-|. .+-..+.-.|....-+++.++..+.+.+...+ |.. -..-+-.+....++.+|..++-
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy-K~Y~Gi~~m~~RnFkeAa~Ll~ 216 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY-KVYKGIFKMMRRNFKEAAILLS 216 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH-HHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHH
Q 009782 518 MLV 520 (526)
Q Consensus 518 ~m~ 520 (526)
+..
T Consensus 217 d~l 219 (412)
T COG5187 217 DIL 219 (412)
T ss_pred HHh
No 472
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.92 E-value=73 Score=21.33 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=30.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 138 (526)
.|+...++.++..++.-.-.+.+...+......| ..+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3455566667777776666777777777777666 3455556555555554
No 473
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.83 E-value=4.7e+02 Score=27.42 Aligned_cols=362 Identities=10% Similarity=-0.010 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 127 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
..-...+..+.+.+++......+..- . .+...-.....+....|+.++|......+=..| .........++..+..
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p--~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-P--KPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHH
Confidence 34444555666677777776633222 1 122334555666777777776766666654444 2344566667766665
Q ss_pred cCChHHHH--HHHHHHHHhCC-----------CCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHH--
Q 009782 207 LGLIRVGE--KVHLDAVRFGF-----------GFDGF-VLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY-- 270 (526)
Q Consensus 207 ~g~~~~a~--~~~~~~~~~g~-----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-- 270 (526)
.|.+.... +=++.+...|- .++.. ....++..+ .+...+...+.... ++...-..++-++
T Consensus 176 ~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~R 251 (644)
T PRK11619 176 SGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFAS 251 (644)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHH
Confidence 55433221 11222222221 11111 111222221 22222332222221 1211111111122
Q ss_pred HhCCChHHHHHHHHHHHHc-CCCCcHHHH--HHHH-HHh-hh-hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChH
Q 009782 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAI--SSIL-ANA-SL-LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~--~~ll-~~~-~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (526)
....+.+.|...+...... +..+..... ..+. ... .. ...+...++...... .+.....--+..-.+.++++
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHH
Confidence 2345668888888876444 233322211 1111 111 21 334444443332221 24444455555666888888
Q ss_pred HHHHHhccCCC--CCh---hHHHHHH-HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH---HH--HHHHH
Q 009782 345 QACWLFDHMPQ--KDV---VSWNSII-HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV---KV--GERLF 413 (526)
Q Consensus 345 ~A~~~~~~~~~--~~~---~~~~~li-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~--a~~~~ 413 (526)
.+...+..|.. .+. .-|..-- ...|+.++|...|+.... ..+ -|..|...- .|.. .. ....
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~~--Lg~~~~~~~~~~~~~- 401 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQR--LGEEYPLKIDKAPKP- 401 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHHH--cCCCCCCCCCCCCch-
Confidence 88888888763 111 1122211 236777888888887633 112 233322211 1211 00 0000
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC---C
Q 009782 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE---P 490 (526)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p 490 (526)
.. .+..+. -..-+..+...|+...|...+...+. ..+......+.......|..+.++....+....+ -
T Consensus 402 ~~-----~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~-~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~ 473 (644)
T PRK11619 402 DS-----ALTQGP--EMARVRELMYWNMDNTARSEWANLVA-SRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE 473 (644)
T ss_pred hh-----hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH
Confidence 00 000011 11234556677888888888844444 3555556666666677888777777665432210 0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHH
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
.-+..|...+..+.+.-..+.+.-
T Consensus 474 rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 474 RFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred hCCcchHHHHHHHHHHcCCCHHHH
Confidence 112236666666666555555543
No 474
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.53 E-value=1.3e+02 Score=21.41 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 009782 77 QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119 (526)
Q Consensus 77 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 119 (526)
++|+-....|+..|+..|..+++.+.-.=.++...+++..|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7888888899999999999999998877778888888888865
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.99 E-value=1.6e+02 Score=27.48 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-cchHHHHHHHHH
Q 009782 442 IDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN-EHNFELLIKIYG 504 (526)
Q Consensus 442 ~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~ 504 (526)
.++...++.+.+..-|+. ..|..+.......|.++..+.+|+++...+... ......++.++.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 446666665566666665 456666667777777777777777776644221 223444555544
No 476
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.67 E-value=1.9e+02 Score=22.31 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=25.0
Q ss_pred ccCCHHHHHHHHHHHHHhc-CCCC---------chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKY-GISP---------RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~-~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
..|.+++|..-.+...+.. .++| |...+..|..++...|++++++.--
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3456666665555443321 3333 2344566667777777777766544
No 477
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.54 E-value=3.8e+02 Score=25.78 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGN------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..+.-+.+.|..+|+++.|.+.|.+... .-+..|-.+|..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3456678889999999999999988654 12345667777778888998888888877664
No 478
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.43 E-value=3.6e+02 Score=25.19 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCCHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCChHH
Q 009782 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAH------LGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDE 444 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 444 (526)
+++..++++....+. |..+..-..|.++-. .-++.....+|+.+.. +.|++. +.|- .-+.....-.+.
T Consensus 273 ~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNR-AVAla~~~Gp~a 347 (415)
T COG4941 273 DEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNR-AVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehH-HHHHHHhhhHHh
Confidence 567777777776655 788877777766532 2367777778877764 455433 3332 233444455667
Q ss_pred HHHHHHhhcCCCCCH---HHH-HHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 445 AYSMIVEKMEFEASP---VVW-GALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 445 A~~~~~~~~~~~p~~---~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
++.+. +.++-.|.. ..| ..=...+.+.|+.++|...|++++.+.++...
T Consensus 348 gLa~v-e~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMV-EALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHH-HHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77777 766656533 222 33345578899999999999999988777544
No 479
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.15 E-value=2.1e+02 Score=26.31 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQV 314 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~ 314 (526)
++..+.+.++..+..+.+..+ ..+..-...+..+...|++.+|++++.+..+. --....|+.+=.--.+++.....
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~~l~~~~c~~~L~~~L~e~~~~ 179 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQL--LEELKGYSCVRHLSSQLQETLEL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHhcccchHHHHHhHHHHHHHHH
Q ss_pred HHHHHHhCC-----CCchhHHhHHHHHHHhcCChHHHHHHhc
Q 009782 315 HGWVLRRGV-----EWDLCIANSLIVVYSKDGKLDQACWLFD 351 (526)
Q Consensus 315 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 351 (526)
.+.+.+..+ ..|+..|..+..+|.-.|+...+.+-+.
T Consensus 180 i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 180 IEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
No 480
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.90 E-value=2e+02 Score=23.10 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHcc-CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 80 ESSVQNGITVQTETFASLLETCYQL-KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 80 ~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456678775443 44455555554 46778999999998887666665555567777777654
No 481
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.67 E-value=3.2e+02 Score=24.30 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+..+.+++...|++-++++-..+.+...|+. ..|-.=..+....=+..+|..-+.++++++|.-..+...=++++
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLL 308 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 3444566667788888888887788888865 55555555555556788999999999999988555444433333
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.15 E-value=5.4e+02 Score=27.72 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
++|..+.+.|-.+-|+.+.++=. +--.|---||+.+.|++.-+.+- +..+|..|......+|+.+-|+.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~-----tRF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm 693 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER-----TRFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEM 693 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc-----hheeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHH
Confidence 44555555666665555544221 11111112455555555443321 44566666666666677666666
Q ss_pred HHHHHH
Q 009782 412 LFSVMV 417 (526)
Q Consensus 412 ~~~~~~ 417 (526)
.|+...
T Consensus 694 ~yQ~~k 699 (1202)
T KOG0292|consen 694 CYQRTK 699 (1202)
T ss_pred HHHHhh
Confidence 666553
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.99 E-value=3.7e+02 Score=30.19 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=81.1
Q ss_pred HhccCCHHHHHH------HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhh-------cCCCC-C-HHHHHH
Q 009782 400 CAHLGSVKVGER------LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK-------MEFEA-S-PVVWGA 464 (526)
Q Consensus 400 ~~~~~~~~~a~~------~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~p-~-~~~~~~ 464 (526)
....|.+.++.+ ++...... -.++....|..|...+-+.|+.++|+..-.++ ++..+ + ...|..
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 344556665655 44433221 12345677888889999999999998876332 24443 2 256666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcc--------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 465 LLYACYLHGNVCMGETAAQKLFEL--------EPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+...+...++...|...+.++..+ .|+-..+...+...+...++++.|.++++.+.+
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666667777888888888887662 245455566677777778999999999888765
No 484
>PRK09857 putative transposase; Provisional
Probab=34.86 E-value=2.4e+02 Score=25.95 Aligned_cols=54 Identities=9% Similarity=0.242 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
.++.++-.++++.+.+..|.......+++.-+.+.|.-+++.++.++|...|+.
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 219 TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred ccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333334443333333333333444445555555555566666666666653
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.75 E-value=1.9e+02 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
.++..-+..+.+.+++..|..+.++++++.|..
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 455666666777888888888888888877764
No 486
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.44 E-value=2.9e+02 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHhC--------------CCCchhHHhHHHHHHHhcCChHHHHHHhccC
Q 009782 306 SLLRIGAQVHGWVLRRG--------------VEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 353 (526)
.++.++..+++.+.+.. ..+.-...|.....+.+.|.++.|..++++-
T Consensus 146 ~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 146 LQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 56677777777765532 2344566788889999999999999999853
No 487
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.42 E-value=89 Score=20.92 Aligned_cols=33 Identities=12% Similarity=-0.090 Sum_probs=16.2
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 192 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
|....++.++..++.-.-++.+...+.++.+.|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444555555554444555555555555554
No 488
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=34.34 E-value=2.4e+02 Score=27.98 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=11.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSV 415 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~ 415 (526)
|-.++.-|..+++++.|.++.+.
T Consensus 576 y~~iL~e~~sssKWeqavRLCrf 598 (737)
T KOG1524|consen 576 YPEILHEYLSSSKWEQAVRLCRF 598 (737)
T ss_pred cHHHHHHHhccchHHHHHHHHHh
Confidence 34444444455555555554433
No 489
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=41 Score=35.29 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
...+|+++.|++.- +.++ +..+|..|+....++|+..-|+-.|++...
T Consensus 653 aLe~gnle~ale~a-kkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAA-KKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHH-HhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34677888887766 4443 567788888888888888888877777544
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.87 E-value=2.3e+02 Score=23.45 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=41.1
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 82 SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 82 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
+.+.|++.+..- ..++..+....+.-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 456687755443 3555666666667788999999988876666655555577777777543
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.77 E-value=3.4e+02 Score=24.98 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=53.4
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHh----------cCChHHHHH
Q 009782 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAE----------LGEYEDAIA 180 (526)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~ 180 (526)
.++|+.+.+.++.|.-..+.-+.-.+...=.+...+.+|+.+..... -|..|+..||. .|++..-.+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~---rfd~Ll~iCcsmlil~Re~il~~DF~~nmk 339 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ---RFDFLLYICCSMLILVRERILEGDFTVNMK 339 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 46889999999999888777777777788889999999998865532 25666655553 588888877
Q ss_pred HHHH
Q 009782 181 LYFQ 184 (526)
Q Consensus 181 ~~~~ 184 (526)
+++.
T Consensus 340 LLQ~ 343 (370)
T KOG4567|consen 340 LLQN 343 (370)
T ss_pred HHhc
Confidence 7654
No 492
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=33.23 E-value=2.3e+02 Score=21.96 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCCChhHHHHHHHHHHhcCChhHH
Q 009782 68 KLQALDSIIQDLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+..++.+|+..|++..... ..++......+|+.+-- -++.+.+++....+ .|+. +...-..+++...+.|-++..
T Consensus 2 ~l~~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~--t~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~ 78 (124)
T PF08780_consen 2 RLENFKKALSRLEEALEKYEDPLSELERDGVIQRFEF--TFELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDG 78 (124)
T ss_dssp -HHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCH
Confidence 3456778888888777642 22244455566665544 26667777766554 4553 444447778888888888777
Q ss_pred HHHHhccccCCCCcccHH
Q 009782 146 HQVFDQMSNRTAFAFPWN 163 (526)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~ 163 (526)
...++.+..++..+.+|+
T Consensus 79 e~Wl~m~~~RN~tsHtYd 96 (124)
T PF08780_consen 79 EIWLDMLEDRNLTSHTYD 96 (124)
T ss_dssp HHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHhccccCCCC
Confidence 777776666655445554
No 493
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.07 E-value=3.4e+02 Score=23.92 Aligned_cols=63 Identities=14% Similarity=0.303 Sum_probs=41.6
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHH
Q 009782 249 RTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ 313 (526)
Q Consensus 249 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~ 313 (526)
..+|+-..+|.+.....++..|. .+++++|.+.+.++.+.|..|.+.. +.+.+.+.+.+.+..
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K~~~~~E~ 290 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVVKNMDVAES 290 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhccHHHH
Confidence 34555555666666666666544 5789999999999999998887643 445555555443333
No 494
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.06 E-value=1.2e+02 Score=29.13 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC-----------CCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIG-----------NKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
.-.|++.++-.||+..|+++++.+. .-.+.++..+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888777776654 2345678888889999999999999988765
No 495
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=32.78 E-value=1.4e+02 Score=29.70 Aligned_cols=31 Identities=13% Similarity=-0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
..+-.|..++...+++.+|++....+....|
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 3344444455555555555555444444444
No 496
>PRK02287 hypothetical protein; Provisional
Probab=32.74 E-value=2.9e+02 Score=22.91 Aligned_cols=57 Identities=11% Similarity=-0.008 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
.+..++.-++.=.|..++|.+++ +..+..++- ..-..++..|.+..+-++..++-++
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll-~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~ 165 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKIL-SKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKE 165 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHH-hhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 34455566666666666666666 555444433 2223455555555555554444333
No 497
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=32.50 E-value=2.2e+02 Score=21.55 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 009782 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
.+.+.+.+...+.|+.+..+..|+.-+....-|+++..--+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555666655555555555555555555544433
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.30 E-value=2.7e+02 Score=23.01 Aligned_cols=59 Identities=8% Similarity=-0.143 Sum_probs=29.7
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 185 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3444554443322 3444444444455666666666666655555544444555555553
No 499
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=4.2e+02 Score=24.60 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
...-+++-+..+++-+........++.+.+.+.++-+..++....- .+.. +++. .+..+.+.-++++.+. +.|
T Consensus 18 LifPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~~---ekr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 18 LIFPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NALV---EKRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHHH---HHHHHHHHHHHHHHHH-HHH
Confidence 3445566666667777777777788888888888888888887631 1100 0110 1112233333333331 111
Q ss_pred CHHHH-H-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHH--HhhcCCCCCHHHHH
Q 009782 389 DHLTF-V-SLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMI--VEKMEFEASPVVWG 463 (526)
Q Consensus 389 ~~~~~-~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~--~~~~~~~p~~~~~~ 463 (526)
=.... + -++. ...........++.+.+++++.|+ ..+...+.+....+|++..|-..+ .+.+-..|+....+
T Consensus 92 iv~~le~Pd~~~---~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 92 IVKVLENPDLIA---ALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred HHHHHcCHHHHH---HHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 11100 0 1111 112223346788888888899996 456666777777899999887764 35555566653333
Q ss_pred HHHHHH---HhcCChHHHHHHHHHHHc
Q 009782 464 ALLYAC---YLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 464 ~l~~~~---~~~g~~~~a~~~~~~~~~ 487 (526)
++-.-+ .-..+++.|.+-+.++.+
T Consensus 169 alwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 169 ALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 332222 234578888887777766
No 500
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.10 E-value=2.1e+02 Score=21.15 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcccc
Q 009782 114 HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSN 154 (526)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 154 (526)
++++...+....+..+..|--.|.+.|+.+.|.+-|+.-..
T Consensus 60 ~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 60 LEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 33343333333334444444555555555555555554433
Done!